This repository contains a variety of simple utilities for the BiocPy project, mostly convenient aspects of R that aren't provided by base Python. The aim is to simplify development of higher-level packages like scranpy and singler that would otherwise have to implement these methods individually.
importbiocutilsbiocutils.match(["A", "C", "E"], ["A", "B", "C", "D", "E"]) ## [0, 2, 4]importbiocutilsbiocutils.factorize(["A", "B", "B", "A", "C", "D", "C", "D"]) ## (['A', 'B', 'C', 'D'], [0, 1, 1, 0, 2, 3, 2, 3])importbiocutilsbiocutils.intersect(["A", "B", "C", "D"], ["D", "A", "E"]) ## ['A', 'D']importbiocutilsbiocutils.union(["A", "B", "C", "D"], ["D", "A", "E"]) ## ['A', 'B', 'C', 'D', 'E']importbiocutilsbiocutils.subset(["A", "B", "C", "D", "E"], [0, 2, 4]) ## ['A', 'C', 'E']importnumpyasnpy=np.array([10, 20, 30, 40, 50]) biocutils.subset(y, [0, 2, 4]) ## array([10, 30, 50])Checks if all elements of a list or tuple are of the same type.
importbiocutilsimportnumpyasnpx= [np.random.rand(3), np.random.rand(3, 2)] biocutils.is_list_of_type(x, np.ndarray) ## Trueand many more. Check out the documentation for more information.