diff --git a/.gitignore b/.gitignore deleted file mode 100644 index 140c7ad8..00000000 --- a/.gitignore +++ /dev/null @@ -1,13 +0,0 @@ -_build -*.bak -*~ -.DS_Store -.idea - -#eclipse -.project -.pydevproject -.settings - -# Include zip files present in static_root -!/static_root/**/*.zip diff --git a/LICENSE.txt b/LICENSE.txt new file mode 100644 index 00000000..de749f99 --- /dev/null +++ b/LICENSE.txt @@ -0,0 +1,50 @@ +This program is part of the DiffPy and DANSE open-source projects +and is available subject to the conditions and terms laid out below. + +If you use this program to do productive scientific research that leads +to publication, we ask that you acknowledge use of the program by citing +the following paper in your publication: + + C. L. Farrow, P. Juhas, J. W. Liu, D. Bryndin, E. S. Bozin, + J. Bloch, Th. Proffen and S. J. L. Billinge, PDFfit2 and + PDFgui: computer programs for studying nanostructure in + crystals, J. Phys.: Condens. Matter 19, 335219 (2007) + +Copyright 2006-2007, Board of Trustees of Michigan State University, +Copyright 2008-2009, Board of Trustees of Columbia University in the +city of New York. (Copyright holder indicated in each source file). + +For more information please visit the project web-page: + http://www.diffpy.org/ +or email Prof. Simon Billinge at sb2896@columbia.edu + +Redistribution and use in source and binary forms, with or without +modification, are permitted provided that the following conditions +are met: + + * Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + * Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + * Neither the name of the copyright holder nor the names of its + contributors may be used to endorse or promote products derived from + this software without specific prior written permission. + +THIS SOFTWARE IS PROVIDED BY COPYRIGHT HOLDER "AS IS". COPYRIGHT HOLDER +EXPRESSLY DISCLAIMS ANY AND ALL WARRANTIES AND CONDITIONS, EITHER +EXPRESS OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED +WARRANTIES OF MERCHANTABILITY, TITLE, FITNESS, ADEQUACY OR SUITABILITY +FOR A PARTICULAR PURPOSE, AND ANY WARRANTIES OF FREEDOM FROM +INFRINGEMENT OF ANY DOMESTIC OR FOREIGN PATENT, COPYRIGHTS, TRADE +SECRETS OR OTHER PROPRIETARY RIGHTS OF ANY PARTY. IN NO EVENT SHALL +COPYRIGHT HOLDER BE LIABLE TO ANY PARTY FOR ANY DIRECT, INDIRECT, +INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT +NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF +USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON +ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT +(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF +THIS SOFTWARE OR RELATING TO THIS AGREEMENT, EVEN IF ADVISED OF THE +POSSIBILITY OF SUCH DAMAGE. diff --git a/Makefile b/Makefile deleted file mode 100644 index 0e1ef966..00000000 --- a/Makefile +++ /dev/null @@ -1,267 +0,0 @@ -# Makefile for Sphinx documentation -# - -# You can set these variables from the command line. -SPHINXOPTS = -SPHINXBUILD = sphinx-build -PAPER = -BUILDDIR = _build - -CURRENT_DOC_DIR = ./static_root/doc -TEMP_TEST_DOC_DIR = ./doc - -# User-friendly check for sphinx-build -ifeq ($(shell which $(SPHINXBUILD) >/dev/null 2>&1; echo $$?), 1) -$(error The '$(SPHINXBUILD)' command was not found. Make sure you have Sphinx installed, then set the SPHINXBUILD environment variable to point to the full path of the '$(SPHINXBUILD)' executable. Alternatively you can add the directory with the executable to your PATH. If you don't have Sphinx installed, grab it from http://sphinx-doc.org/) -endif - -# Internal variables. -PAPEROPT_a4 = -D latex_paper_size=a4 -PAPEROPT_letter = -D latex_paper_size=letter -ALLSPHINXOPTS = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) . -# the i18n builder cannot share the environment and doctrees with the others -I18NSPHINXOPTS = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) . - -.PHONY: help clean html dirhtml singlehtml pickle json htmlhelp qthelp devhelp epub latex latexpdf text man changes linkcheck doctest gettext - -help: - @echo "Please use \`make ' where is one of" - @echo " html to make standalone HTML files" - @echo " dirhtml to make HTML files named index.html in directories" - @echo " singlehtml to make a single large HTML file" - @echo " pickle to make pickle files" - @echo " json to make JSON files" - @echo " htmlhelp to make HTML files and a HTML help project" - @echo " qthelp to make HTML files and a qthelp project" - @echo " devhelp to make HTML files and a Devhelp project" - @echo " epub to make an epub" - @echo " latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter" - @echo " latexpdf to make LaTeX files and run them through pdflatex" - @echo " latexpdfja to make LaTeX files and run them through platex/dvipdfmx" - @echo " text to make text files" - @echo " man to make manual pages" - @echo " texinfo to make Texinfo files" - @echo " info to make Texinfo files and run them through makeinfo" - @echo " gettext to make PO message catalogs" - @echo " changes to make an overview of all changed/added/deprecated items" - @echo " xml to make Docutils-native XML files" - @echo " pseudoxml to make pseudoxml-XML files for display purposes" - @echo " linkcheck to check all external links for integrity" - @echo " doctest to run all doctests embedded in the documentation (if enabled)" - -clean: - rm -rf $(BUILDDIR)/* - -html: - $(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html - @echo - @echo "Create hard-linked copy of 'static_root':" - @echo - rsync -aO -F --link-dest=$(CURDIR)/static_root/ \ - static_root/ $(BUILDDIR)/html/ - @echo - @echo "Validate symbolic links:" - @echo - @find $(BUILDDIR)/html -type l \( -exec test -e {} \; -or -print \) | \ - sed 's/^/[broken] /' | ( ! grep . ) && echo "[OK]" - @echo - @echo "Build finished. The HTML pages are in $(BUILDDIR)/html." - -dirhtml: - $(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml - @echo - @echo "Build finished. The HTML pages are in $(BUILDDIR)/dirhtml." - -singlehtml: - $(SPHINXBUILD) -b singlehtml $(ALLSPHINXOPTS) $(BUILDDIR)/singlehtml - @echo - @echo "Build finished. The HTML page is in $(BUILDDIR)/singlehtml." - -pickle: - $(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) $(BUILDDIR)/pickle - @echo - @echo "Build finished; now you can process the pickle files." - -json: - $(SPHINXBUILD) -b json $(ALLSPHINXOPTS) $(BUILDDIR)/json - @echo - @echo "Build finished; now you can process the JSON files." - -htmlhelp: - $(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(BUILDDIR)/htmlhelp - @echo - @echo "Build finished; now you can run HTML Help Workshop with the" \ - ".hhp project file in $(BUILDDIR)/htmlhelp." - -qthelp: - $(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) $(BUILDDIR)/qthelp - @echo - @echo "Build finished; now you can run "qcollectiongenerator" with the" \ - ".qhcp project file in $(BUILDDIR)/qthelp, like this:" - @echo "# qcollectiongenerator $(BUILDDIR)/qthelp/sphinxTestRun.qhcp" - @echo "To view the help file:" - @echo "# assistant -collectionFile $(BUILDDIR)/qthelp/sphinxTestRun.qhc" - -devhelp: - $(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp - @echo - @echo "Build finished." - @echo "To view the help file:" - @echo "# mkdir -p $$HOME/.local/share/devhelp/sphinxTestRun" - @echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/sphinxTestRun" - @echo "# devhelp" - -epub: - $(SPHINXBUILD) -b epub $(ALLSPHINXOPTS) $(BUILDDIR)/epub - @echo - @echo "Build finished. The epub file is in $(BUILDDIR)/epub." - -latex: - $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex - @echo - @echo "Build finished; the LaTeX files are in $(BUILDDIR)/latex." - @echo "Run \`make' in that directory to run these through (pdf)latex" \ - "(use \`make latexpdf' here to do that automatically)." - -latexpdf: - $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex - @echo "Running LaTeX files through pdflatex..." - $(MAKE) -C $(BUILDDIR)/latex all-pdf - @echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex." - -latexpdfja: - $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex - @echo "Running LaTeX files through platex and dvipdfmx..." - $(MAKE) -C $(BUILDDIR)/latex all-pdf-ja - @echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex." - -text: - $(SPHINXBUILD) -b text $(ALLSPHINXOPTS) $(BUILDDIR)/text - @echo - @echo "Build finished. The text files are in $(BUILDDIR)/text." - -man: - $(SPHINXBUILD) -b man $(ALLSPHINXOPTS) $(BUILDDIR)/man - @echo - @echo "Build finished. The manual pages are in $(BUILDDIR)/man." - -texinfo: - $(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo - @echo - @echo "Build finished. The Texinfo files are in $(BUILDDIR)/texinfo." - @echo "Run \`make' in that directory to run these through makeinfo" \ - "(use \`make info' here to do that automatically)." - -info: - $(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo - @echo "Running Texinfo files through makeinfo..." - make -C $(BUILDDIR)/texinfo info - @echo "makeinfo finished; the Info files are in $(BUILDDIR)/texinfo." - -gettext: - $(SPHINXBUILD) -b gettext $(I18NSPHINXOPTS) $(BUILDDIR)/locale - @echo - @echo "Build finished. The message catalogs are in $(BUILDDIR)/locale." - -changes: - $(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) $(BUILDDIR)/changes - @echo - @echo "The overview file is in $(BUILDDIR)/changes." - -linkcheck: - # For some reason, the doc directory for our sources is set to - # ./static_root/doc but Sphinx expects it to be at ./doc and this has yet to - # be addressed. The effect of this discontinuity is that when Sphinx is - # running, it looks in the incorrect location with relative paths for static - # files we are serving up. This ultimately is not an issue for the - # functionality of the website as the links are indeed consistent in the - # static files generated, but it causes tests such as `linkcheck` to fail. - # For this reason, this make command has been modified to accoun for this - # discontinuity to preserve the validity of the test, but this change may - # have impact on future modifications to the website's internal structure - # and/or a fix for this issue, hence the in-line documentation of the problem - # (which gets printed to the console upon `linkcheck`'s failure). - # - # Here's what the make command was prior to this modification (and likely - # should be converted back to after addressing the issue): - # - # $(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) $(BUILDDIR)/linkcheck - # @echo - # @echo "Link check complete; look for any errors in the above output " \ - # "or in $(BUILDDIR)/linkcheck/output.txt." - # - # Here's an overview of the logic for circumventing the issue: - # - # (1) Attempt to create the symlink to the actual doc directory in the - # location that Sphinx expects it to be. - # => Success - # (a) Run linkcheck as we've properly configured our local structure - # to be what Sphinx expects. - # (b) Delete the symlink hack/patch, regardless of `linkcheck`'s - # success as we know we create ./doc as a symlink in (1) (as - # opposed to it being a directory containing its own data - # possibly created at a later time without knowledge of this - # fix). - # => Failure - # (a) Do no proceed and let this message be printed for future - # debugging/maintainance effors. - test -h $(TEMP_TEST_DOC_DIR) \ - || ln -sT $(CURRENT_DOC_DIR) $(TEMP_TEST_DOC_DIR) \ - && $(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) $(BUILDDIR)/linkcheck \ - ; rm $(TEMP_TEST_DOC_DIR) - @echo - @echo "Link check complete; look for any errors in the above output " \ - "or in $(BUILDDIR)/linkcheck/output.txt." - -doctest: - $(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest - @echo "Testing of doctests in the sources finished, look at the " \ - "results in $(BUILDDIR)/doctest/output.txt." - -xml: - $(SPHINXBUILD) -b xml $(ALLSPHINXOPTS) $(BUILDDIR)/xml - @echo - @echo "Build finished. The XML files are in $(BUILDDIR)/xml." - -pseudoxml: - $(SPHINXBUILD) -b pseudoxml $(ALLSPHINXOPTS) $(BUILDDIR)/pseudoxml - @echo - @echo "Build finished. The pseudo-XML files are in $(BUILDDIR)/pseudoxml." - -# Publish to diffpy.github.io - -GITREPOPATH = $(CURDIR)/.git -SOURCEBRANCH = $(shell git symbolic-ref --short HEAD) -PUBLISHBRANCH = master -PUBFIRSTREMOTE = $(shell git branch -r --list "*/$(PUBLISHBRANCH)" | head -1) -GITREMOTE = $(shell git config --get branch.$(PUBLISHBRANCH).remote) -GITREMOTEURL = $(shell git config --get remote.$(GITREMOTE).url) -GITLASTCOMMIT = $(shell git rev-parse --short HEAD) - -.create-publish-branch: - @git rev-parse --verify --quiet $(PUBLISHBRANCH) >/dev/null || \ - echo $(PUBFIRSTREMOTE) | grep -q . || \ - ( echo "No remote found for branch $(PUBLISHBRANCH)" >&2; exit 1 ) - git rev-parse --verify --quiet $(PUBLISHBRANCH) >/dev/null || \ - git branch --track $(PUBLISHBRANCH) $(PUBFIRSTREMOTE) - -publish-prepare: .create-publish-branch - @test -d $(BUILDDIR)/html || \ - ( echo >&2 "Run 'make html' first!"; false ) - test -d $(BUILDDIR)/webpage || \ - git clone -s -b $(PUBLISHBRANCH) $(GITREPOPATH) $(BUILDDIR)/webpage - git -C $(BUILDDIR)/webpage fetch - git -C $(BUILDDIR)/webpage checkout --force $(PUBLISHBRANCH) - git -C $(BUILDDIR)/webpage pull $(GITREMOTEURL) $(PUBLISHBRANCH) - rsync -aOcv --delete --exclude=.git --exclude=.rsync-exclude \ - --exclude-from=$(BUILDDIR)/webpage/.rsync-exclude \ - --link-dest=$(realpath $(BUILDDIR)/html) \ - $(BUILDDIR)/html/ $(BUILDDIR)/webpage/ - git -C $(BUILDDIR)/webpage add --force --all . - git -C $(BUILDDIR)/webpage diff --cached --quiet || \ - git -C $(BUILDDIR)/webpage \ - commit -m "Sync with the source at $(GITLASTCOMMIT)" - git -C $(BUILDDIR)/webpage push $(GITREPOPATH) $(PUBLISHBRANCH) - -publish-push: - git push $(GITREMOTE) $(SOURCEBRANCH) $(PUBLISHBRANCH) diff --git a/NSFnugget.rst b/NSFnugget.rst deleted file mode 100644 index 9f72d93b..00000000 --- a/NSFnugget.rst +++ /dev/null @@ -1,41 +0,0 @@ -Enabling new science in nanoscale structure characterization of complex materials -================================================================================= - -.. include:: abbreviations.txt - -*C. L. Farrow, P. Juhás, J. W. Liu, D. Bryndin, E. S. Božin, J. Bloch, -and S. J. L. Billinge (Michigan State University)* - -To understand and control the properties of materials it is necessary to have -a detailed knowledge of their atomic structure. Increasingly, we are interested -in exploiting materials with complex structures on the nanoscale, which presents -special experimental challenges as crystallography, the standard approach to -structure determination, loses its power on these length-scales. Alternative -methods sensitive to nanoscale order are under development. The diffraction -sub-group of the DANSE project recently released a new software tool that -will have a large impact in nanostructure characterization using x-ray and -neutron diffraction. - - - -.. figure:: images/PDFgui_screenshot_707.png - :align: center - :scale: 50 % - - Screen-shot of PDFgui during a refinement of multiple data-sets - - -The diffraction data are Fourier transformed to obtain the atomic pair distribution -function (PDF) and analyzed by quantitatively fitting nanostructure models to the -data. PDFgui allows rapid setup of individual and multiple -refinements. This program will be implemented at the -POWGEN3 and NOMAD diffractometers at SNS with macros to allow real-time parametric -refinements similar to those shown, allowing researchers to make scientific -discoveries during data collection, at the beam-time, and not a-posteriori after -the beamtime is over. PDFgui has numerous extensions -that are described in more detail in [#]_. The beta version of PDFgui -is now in public release, available for Windows, Linux and Mac OSX platforms, -and in the first month has been downloaded 220 times. More information can be -found at https://www.diffpy.org. - -.. [#] |citeFarrowJpcm07| diff --git a/PublishedRevision b/PublishedRevision new file mode 100644 index 00000000..ffea877c --- /dev/null +++ b/PublishedRevision @@ -0,0 +1 @@ +HEAD diff --git a/README.md b/README.md deleted file mode 100644 index f15d06d4..00000000 --- a/README.md +++ /dev/null @@ -1,200 +0,0 @@ -diffpy.github.io -================ - -Sphinx sources for the [diffpy.org][site] web page. - -### Quick Jump: - -- [GitHub Structure](#github-structure) -- [Where to Make Changes](#where-to-make-changes) - - [Adding Citations](#adding-citations) - - [Adding Publications that Describe a DiffPy Project (the "Reference" Section)](#reference-section-1) - - [Adding Other Publications (the "Publication Using diffpy.cmi" Section)](#reference-section-2) -- [New Version of Existing Project](#new-version) -- [New Project](#publishing-new-project) -- [Publishing Changes](#publishing-changes) - - [Testing Changes](#testing-changes) - - [Maintainers (Publishing Changes)](#publishing-changes) - - -# GitHub Structure - -This repository contains 3 branches: - -1. [`source`][source] sphinx sources for the web page -2. [`master`][master] sources compiled to HTML format that are published via GitHub pages -3. [`archive`][archive] converted subversion repository for the old diffpy.org sources - -The basic logic is we edit on the source branch and follow instructions below to build the -sources. The built sources, in the form of html files, are then copied to the master branch -which is what GitHub pages is configured to render. - - -# Publishing New Version of an Existing Project - -For releasing an updated version of a project, first generate the release for the project and -make sure it is successfully deployed at Pypi and conda-forge. - -If you would like to see Connor's commented out comments about how to link pdf versions of -documentation manuals please see the raw source code of this readme. However, we are moving -away from having separately built manuals. - - -With the [`source` branch][source] checed out, edit the landing page of your project] (e.g., -`products/pdfgetx.rst` for PDFgetx3) to document and provide the updated version of your project. - -Once the preceding steps are complete, see -the instructions of the [Publishing Changes](#submitting-changes) section for publishing these changes. - -# Where to Make Changes - -Here is a brief map of where in the sources to make updates when different things happen - -## A new paper has appeared describing a diffpy product - - -### Adding Publications that Describe a DiffPy Project (the "Reference" Section) - -When adding a new publication to the list of [references used within the website](https://www.diffpy.org/publications.html), add the -citation text of the publication to the documentation *only once* as a named snippet in -[abbreviations.txt](https://github.com/diffpy/diffpy.github.io/blob/source/abbreviations.txt#L286). For example: -``` -.. |citeJuhasJac18| replace:: - P. Juhás, J. N. Louwen, L. van Eijck, E. T. C. Vogt, S. J. L. Billinge, - `PDFgetN3: atomic pair distribution functions from - neutron powder diffraction data using ad hoc corrections - `__, - *J. Appl. Crystallogr.*, **51**, 1492--1497 (2018) - |downloadJuhasJac18| -``` -Here, `|citeJuhasJac18|` is the name that can be used elsewhere in the documentation and -the Sphinx documentation generator will replace all instances of this tag with the indented -text following the `replace::` directive. - -**Important:** After defining the publication's tag as described above, make sure to add the -publication to the list of publications maintained in [publications.rst](https://github.com/diffpy/diffpy.github.io/blob/source/publications.rst). Make sure that -you add the reference to the proper section and do so in descending reverse chronological order -(i.e., the newest citations should appear at the top of their respective sections). - -*Note:* In this example, the citation is for a publication -which describes a product of the diffpy.cmi project (namely, PDFgetN3). For publications which -describe a component of diffpy.cmi, we provide a link to download the publication directly from -the [diffpy.org][site] website. Here, the link is provided via the `|downloadJuhasJac18|` tag -which is the identifier for another snippet within [abbreviations.txt](https://github.com/diffpy/diffpy.github.io/blob/source/abbreviations.txt#L294) following the definition -of `|citeJuhasJac18|`, seen here as: -``` -.. |downloadJuhasJac18| image:: /images/pdficon_small.png - :target: /doc/pdfgetx/Juhas-jac-2018.pdf -``` -Furthermore, note that since the initial use of `|downloadJuhasJac18|` occurs within the indented text -of the definition of `|citeJuhasJac18|`, the link to `|downloadJuhasJac18|` will appear -everywhere `|citeJuhasJac18|` does. - -Lastly, make sure that the linked publication has been included within this project's files, placed in -an appropriate directory (typically, the parent directory of the project that the paper relates to). In -the above example, the publication covers the PDFgetN3 feature of the `pdfgetx` package, thus it is -placed within `pdfgetx`'s documentation directory and referenced accordingly with the line -``` - :target: /doc/pdfgetx/Juhas-jac-2018.pdf -``` - - - -### Adding Other Publications (the "Publication Using diffpy.cmi" Section) - -Adding references to publications that do not describe the release/use of a product within the diffpy.cmi -project (e.g., papers which use some component of diffpy.cmi), we simply provide the usual citation text (with -appropriate DOI link). To add a citation of this type, refer to the information in [Reference Section](#reference-section-1), but -disregard everything starting at, and following, the [Note](#reference-section-note). - - -# Publishing New Project - -For adding a new project to the website, see one of the existing projects (e.g., [pdfgetx](https://www.diffpy.org/products/pdfgetx.html)) as a reference. - -You will need to create a directory for the project to live in within (e.g., [/static_root/doc/pdfgetx](https://github.com/diffpy/diffpy.github.io/tree/source/static_root/doc/pdfgetx)), then -write a landing page for the project (e.g., [/products/pdfgetx.rst](https://github.com/diffpy/diffpy.github.io/blob/source/products/pdfgetx.rst)) which will provide any necessary information -or files needed for a user to use the project. Once this is complete, see -[Publishing New Version of Existing Project](#new-version) for steps on publishing the project. - - -# Publishing Changes - -In order to test and/or publish changes, activate a conda environment that has a working installation of Sphinx - -## Testing Changes - -With your sphinx containing env activated, run the set of Sphinx validation command(s) to check that the static -files that Sphinx will create to be served on the website are written properly: -``` -diffpy.github.io (source)$ make linkcheck SPHINXOPTS="-W" -``` -*NOTE:* the `"-W"` flag forces warnings to be treated as errors. If you believe there is a falsely reported -warning that should be ignored that is preventing the test from passing, rerun the above command with the -`SPHINXOPTS="-W"` portion omitted. Note that on Windows this seemed to generate a number of warnings -not seen on linux and which didn't indicate anything broken. - -Additionally, one can visually/user-experience validate that the changes are what is expected by running: -``` -diffpy.github.io (source)$ make html -``` -Then opening `/_build/html/index.html` which will open a local instance of the website with the proposed changes -in place. - - -## Maintainers (Publishing Changes) - -First, follow the steps outlines in [Testing Changes](#testing-changes). Note that these tests, as they currently exist, are -not extensive and it's quite possible that something indeed may appear incorrectly on the website (hence the manual -review portion). After reviewing the changes, have Sphinx generate the static files to be hosted on the website: -``` -diffpy.github.io (source)$ make html -``` - -Note: this could not be run by successfully by simon on Git Bash. It can presumably be run from WSL? -Prepare the changes to be published: -``` -diffpy.github.io (source)$ make publish-prepare -``` - -Finally, publish the changes: -``` -diffpy.github.io (source)$ make publish-push -``` - - - -[site]: "diffpy.org" -[source]: "source" -[master]: "master" -[archive]: "archive" diff --git a/_includes/substitutions.rst b/_includes/substitutions.rst deleted file mode 100644 index 96287220..00000000 --- a/_includes/substitutions.rst +++ /dev/null @@ -1,2 +0,0 @@ -.. define global names and alias here -.. |diffpycmi| replace:: diffpy.cmi diff --git a/_static/.empty b/_static/.empty deleted file mode 100644 index e69de29b..00000000 diff --git a/_static/diffpy-styles.css b/_static/diffpy-styles.css deleted file mode 100644 index a13987f0..00000000 --- a/_static/diffpy-styles.css +++ /dev/null @@ -1 +0,0 @@ -/* Add CSS style overrides here */ diff --git a/_templates/layout.html b/_templates/layout.html deleted file mode 100644 index 87639d83..00000000 --- a/_templates/layout.html +++ /dev/null @@ -1,5 +0,0 @@ -{# Import the theme's layout. #} -{% extends "!layout.html" %} - -{# Custom CSS overrides #} -{# placeholder, see git log this-file #} diff --git a/_templates/menu01.html b/_templates/menu01.html deleted file mode 100644 index ebcb477b..00000000 --- a/_templates/menu01.html +++ /dev/null @@ -1,20 +0,0 @@ -
  • - Products - -
    • diff --git a/_templates/navbar.html b/_templates/navbar.html deleted file mode 100644 index 3c98d0ea..00000000 --- a/_templates/navbar.html +++ /dev/null @@ -1,10 +0,0 @@ -{% extends "!navbar.html" %} - -{# disable the toc block #} -{% block navbartoc %} -{% endblock %} - -{# add menu to the extra block #} -{% block navbarextra %} - {% include "menu01.html" %} -{% endblock %} diff --git a/abbreviations.txt b/abbreviations.txt deleted file mode 100644 index 0cab1d73..00000000 --- a/abbreviations.txt +++ /dev/null @@ -1,307 +0,0 @@ -.. vim: set ft=rst: - -.. Named web links ----------------------------------------------------- - -.. |anaconda-download| replace:: https://www.anaconda.com/distribution -.. _anaconda-download: https://www.anaconda.com/distribution -.. _diffpy-users: https://groups.google.com/d/forum/diffpy-users -.. _ctv-xpdfsuite: https://columbia.resoluteinnovation.com/technologies/M11-120 - -.. GitHub repositories ------------------------------------------------- - -.. _diffpy.mpdf: https://github.com/benfrandsen/diffpy.magpdf -.. _diffpy.srfit: https://github.com/diffpy/diffpy.srfit -.. _diffpy.srreal: https://github.com/diffpy/diffpy.srreal -.. _diffpy.structure: https://github.com/diffpy/diffpy.structure -.. _diffpy.utils: https://github.com/diffpy/diffpy.utils -.. _libdiffpy: https://github.com/diffpy/libdiffpy -.. _libobjcryst: https://github.com/diffpy/libobjcryst -.. _pyobjcryst: https://github.com/diffpy/pyobjcryst -.. _srfit-sasview: https://github.com/diffpy/srfit-sasview - -.. External online documentation --------------------------------------- - -.. _doc-diffpy.srfit: https://diffpy.github.io/diffpy.srfit -.. _doc-diffpy.srreal: https://diffpy.github.io/diffpy.srreal -.. _doc-diffpy.structure: https://diffpystructure.readthedocs.io -.. _doc-diffpy.utils: https://diffpy.github.io/diffpy.utils -.. _doc-libdiffpy: https://diffpy.github.io/libdiffpy -.. _doc-pyobjcryst: https://diffpy.github.io/pyobjcryst - -.. Citations ----------------------------------------------------------- - -.. |citeJuhasJac13| replace:: - P. Juhás and T. Davis, C. L. Farrow, S. J. L. Billinge, `PDFgetX3: - A rapid and highly automatable program for processing powder - diffraction data into total scattering pair distribution functions - `__, - *J. Appl. Crystallogr.* **46**, 560-566 (2013) - |downloadJuhasJac13| - -.. |downloadJuhasJac13| image:: /images/pdficon_small.png - :target: /doc/pdfgetx/Juhas-jac-2013.pdf - - -.. |citeFarrowJpcm07| replace:: - C. L. Farrow, P. Juhás, J. W. Liu, D. Bryndin, E. S. Božin, J. Bloch, - Th. Proffen and S. J. L. Billinge, `PDFfit2 and PDFgui: computer - programs for studying nanostructure in crystals - `__, - *J. Phys.: Condens. Mat.* **19**, 335219 (2007) - |downloadFarrowJpcm07| - -.. |downloadFarrowJpcm07| image:: /images/pdficon_small.png - :target: /doc/pdfgui/Farrow-jpcm-2007.pdf - - -.. |citeProffenJac99| replace:: - Th. Proffen and S. J. L. Billinge, `PDFFIT a program for full profile - structural refinement of the atomic pair distribution function - `__, - *J. Appl. Crystallogr.* **32**, 572 (1999) - |downloadProffenJac99| - -.. |downloadProffenJac99| image:: /images/pdficon_small.png - :target: /doc/pdffit/Proffen-jac-1999.pdf - - -.. |DiffPyCMI| replace:: - :doc:`diffpy.cmi ` - -.. |citeShiPRL14| replace:: Chenyang Shi, Majid Beidaghi, Michael - Naguib, Olha Mashtalir, Yury Gogotsi, and Simon J. L. Billinge, - |ShiPRL14title|_, - *Phys. Rev. Lett.* **112**, 125501 (2014). - -.. |ShiPRL14title| replace:: - Structure of nanocrystalline Ti\ :sub:`3`\ C\ :sub:`2` MXene using - atomic pair distribution function -.. _ShiPRL14title: http://link.aps.org/doi/10.1103/PhysRevLett.112.125501 - -.. |citeFarrowJac14| replace:: - Christopher L. Farrow, Chenyang Shi, Pavol Juhás, Xiaogang Peng, and - Simon J. L. Billinge, `Robust structure and morphology parameters for - CdS nanoparticles by combining small angle X-ray scattering and atomic - pair distribution function data in a complex modeling framework - `__, - *J. Appl. Crystallogr.* **47**, 561-565 (2014). - -.. |citeAbeykoonArxiv14| replace:: - Milinda Abeykoon, Hefei Hu, Lijun Wu, Yimei Zhu, and Simon J. L. - Billinge, `Calibration and data collection protocols for reliable - lattice parameter values in electron pair distribution function (ePDF) - studies `__, *arXiv*, 1401.1850 (2014). - -.. |citeChoiNanol14| replace:: - Joshua J. Choi, Xiaohao Yang, Zachariah M. Norman, Simon J. L. - Billinge, and Jonathan S. Owen, `Structure of methylammonium lead - iodide on mesoporous titanium dioxide: active material in high - performance metal-organic solar cells - `__, *Nano Lett.* - **14**, 127 (2014). - - -.. |citeJacquesNc13| replace:: - Simon D. M. Jacques, Marco Di Michiel, Simon A. J. Kimber, Xiaohao - Yang, Robert J. Cernik, Andrew M. Beale, and Simon J. L. Billinge, - `Pair distribution function computed tomography - `__, - *Nat. Commun.* **4**, 2536 (2013). - - -.. |citeDavisCgd13| replace:: - Timur Davis, Matthew Johnson, and Simon J. L. Billinge, `Towards - phase quantification at the nanoscale using the total scattering pair - distribution function (TSPDF) method: recrystallization of cryomilled - sulfamerazine `__, - *Cryst. Growth Des.* **13**, 4239–4244 (2013). - -.. |citeYangPccp13| replace:: - Xiaohao Yang, Ahmad S. Masadeh, James R. McBride, Emil S. Bozin, - Sandra J. Rosenthal, and Simon J. L. Billinge, `Confirmation of - disordered structure of ultrasmall CdSe nanoparticles from X-ray - atomic pair distribution function analysis - `__, - *Phys. Chem. Chem. Phys.* **15**, 8480 (2013). - -.. |citeFarrowJacs13| replace:: - Christopher L. Farrow, D. Kwabena Bediako, Yogesh Surendranath, - Daniel G. Nocera, and Simon J. L. Billinge, `Intermediate-range - structure of self-assembled cobalt-based oxygen evolving catalysts - `__, - *J. Am. Chem. Soc.* **135**, 6403-6406 (2013). - -.. |citeTyrstedAcie12| replace:: - Christoffer Tyrsted, Kirsten M. Ø. Jensen, Espen D. Bøjesen, - Nina Lock, Mogens Christensen, Simon J. L. Billinge and Bo - B. Iversen, `Understanding the formation and evolution of ceria - nanoparticles under hydrothermal conditions - `__, - *Angew. Chem. Int. Edit.* **51**, 9030-9033 (2012). - -.. |citeJensenJacs12| replace:: - Kirsten M. Ø. Jensen, Mogens Christensen, Pavol Juhás, Christoffer - Tyrsted, Espen D. Bøjesen, Nina Lock, Simon J. L. Billinge, and Bo B. - Iversen, `Revealing the mechanisms behind SnO2 nanoparticle formation - and growth during hydrothermal synthesis: an in situ total scattering - study `__, - *J. Am. Chem. Soc.* **134**, 6785 (2012). - -.. |citeMengqiangZhuGca12| replace:: - Mengqiang Zhu, Christopher L. Farrow, Jeffrey E. Post, Kenneth J. T. - Livi, Simon J. L. Billinge, Matthew Ginder-Vogel and Donald L. - Sparks, `Structural study of biotic and abiotic poorly-crystalline - manganese oxides using atomic pair distribution function analysis - `__, - *Geochim. Cosmochim. Ac.* **81**, 39-55 (2012). - -.. |citeMengqiangZhuESTL14| replace:: - Mengqiang Zhu, Paul Northrup, Chenyang Shi, Simon J. L. Billinge, - Donald L. Sparks and Glenn A. Waychunas, - `The structure of sulfate adsorption complexes on ferrihydrite - `__, - *Environ. Sci. Technol. Lett.* **1**, 97-101 (2014). - -.. |citeGhidiuCC14| replace:: - Michael Ghidiu, Michael Naguib, Chenyang Shi, Olha Mashtalir, Limei - Pan, Bo Zhang, Jian Yang, Yury Gogotsi, Simon J. L. Billinge and - Michel W. Barsoum, - |GhidiuCC14title|_, - *Chem. Commun.* **50**, 9517-9520 (2014). - -.. |GhidiuCC14title| replace:: - Synthesis and charaterization of two-dimensional - Nb\ :sub:`4`\ C\ :sub:`3` (MXene) -.. _GhidiuCC14title: http://dx.doi.org/10.1039/C4CC03366C - -.. |citeBeecherJacs14| replace:: - Alexander N. Beecher, Xiaohao Yang, Joshua H. Palmer, Alexandra L. - LaGrassa, Pavol Juhás, Simon J. L. Billinge and Jonathan S. Owen, - `Atomic structures and gram scale synthesis of three tetrahedral - quantum dots - `__, - *J. Am. Chem. Soc.* **136**, 10645-10653 (2014). - -.. |citeDoanNguyenAcsn14| replace:: - Vicky V. T. Doan-Nguyen, Simon A. J. Kimber, Diego Pontoni, Danielle - Reifsnyder Hickey, Benjamin T. Diroll, Xiaohao Yang, Marcel - Miglierini, Christopher B. Murray and Simon J. L. Billinge, - `Bulk metallic glass-like scattering signal in small metallic - nanoparticles `__, - *ACS Nano* **8**, 6163–6170 (2014). - -.. |citePrillJac15| replace:: - Dragica Prill, Pavol Juhás, Martin U. Schmidt and Simon J. L. - Billinge, `Modeling pair distribution functions (PDF) of organic - compounds: describing both intra- and intermolecular correlation - functions in calculated PDFs - `__, - *J. Appl. Crystallogr.* **48**, 171-178 (2015). - -.. |citeTerbanNan15| replace:: - Maxwell W. Terban, Matthew Johnson, Marco Di Michiel and Simon J. L. - Billinge, `Detection and characterization of nanoparticles in suspension at - low concentrations using the X-ray total scattering pair distribution - function technique - `__, - *Nanoscale* **7**, 5480 (2015). - -.. |citeGranlundAca15| replace:: - L. Granlund, S. J. L. Billinge and P. M. Duxbury, - `Algorithm for systematic peak extraction from atomic pair distribution - functions - `__, - *Acta Crystallogr. A* **71**, 392-409 (2015). - |downloadGranlundAca15| - -.. |downloadGranlundAca15| image:: /images/pdficon_small.png - :target: /doc/srmise/Granlund-aca-2015.pdf - -.. |citePrillAca16| replace:: - Dragica Prill, Pavol Juhás, Simon J. L. Billinge and Martin U. Schmidt, - `Towards solution and refinement of organic crystal structures by - fitting to the atomic pair distribution function - `__, - *Acta Crystallogr. A* **72**, 62-72 (2016). - -.. |citeJuhasAca15| replace:: - P. Juhás, C. L. Farrow, X. Yang, K. R. Knox and S. J. L. Billinge, - `Complex modeling: a strategy and software program for combining - multiple information sources to solve ill posed structure and - nanostructure inverse problems - `__, - *Acta Crystallogr. A* **71**, 562-568 (2015). - |downloadJuhasJac15| - -.. |downloadJuhasJac15| image:: /images/pdficon_small.png - :target: /doc/diffpy-cmi/Juhas-aca-2015.pdf - -.. |citeTerbanCgd16| replace:: - Maxwell W. Terban, Eugene Y. Cheung, Paul Krolikowski, - Simon J. L. Billinge, - `Recrystallization, phase composition, and local structure of - amorphous lactose from the total scattering pair distribution - function - `__, - *Cryst. Growth Des.* **16**, 210-220 (2016). - - -.. |citeFrandsenPrl16| replace:: - Benjamin A. Frandsen, Michela Brunelli, Katharine Page, - Yasutomo J. Uemura, Julie B. Staunton, Simon J. L. Billinge, - |FrandsenPrl16title|_, - *Phys. Rev. Lett.* **116**, 197204 (2016). - -.. |FrandsenPrl16title| replace:: - Verification of Anderson Superexchange in MnO via magnetic pair - distribution function analysis and *ab initio* theory -.. _FrandsenPrl16title: http://link.aps.org/doi/10.1103/PhysRevLett.116.197204 - - -.. |citeJensenNc16| replace:: - Kirsten M. Ø. Jensen, Pavol Juhás, Marcus A. Tofanelli, - Christine L. Heinecke, Gavin Vaughan, Christopher J. Ackerson, - Simon J. L. Billinge, - |JensenNc16title|_, - *Nat. Commun.* **7**, 11859 (2016) - -.. |JensenNc16title| replace:: - Polymorphism in magic-sized Au\ :sub:`144`\ (SR)\ :sub:`60` clusters -.. _JensenNc16title: http://dx.doi.org/10.1038/ncomms11859 - - -.. |citeShiJac18| replace:: - C. Shi, - `xINTERPDF: a graphical user interface for analyzing - intermolecular pair distribution functions of organic compounds - from X-ray total scattering data - `__, - *J. Appl. Crystallogr.* **51**, 1498-1499 (2018) - |downloadShiJac18| - -.. |downloadShiJac18| image:: /images/pdficon_small.png - :target: /doc/xinterpdf/Shi-jac-2018.pdf - - -.. |citeJuhasJac18| replace:: - P. Juhás, J. N. Louwen, L. van Eijck, E. T. C. Vogt, S. J. L. Billinge, - `PDFgetN3: atomic pair distribution functions from - neutron powder diffraction data using ad hoc corrections - `__, - *J. Appl. Crystallogr.*, **51**, 1492--1497 (2018) - |downloadJuhasJac18| - -.. |downloadJuhasJac18| image:: /images/pdficon_small.png - :target: /doc/pdfgetx/Juhas-jac-2018.pdf - - -.. |citeLiuJac20| replace:: - CH Liu, E. Janke, R. Li, P. Juhás, O. Gang, D. V. Talapin, - S. J. L. Billinge, - `sasPDF: pair distribution function analysis of nanoparticle assemblies - from small-angle-scattering data - `__. - |downloadLiuJac20| - -.. |downloadLiuJac20| image:: /images/pdficon_small.png - :target: /doc/pdfgetx/Liu-jac-2020.pdf diff --git a/acknowledgements.rst b/acknowledgements.rst deleted file mode 100644 index 28b9336e..00000000 --- a/acknowledgements.rst +++ /dev/null @@ -1,37 +0,0 @@ -Acknowledgements -================ - - -Developers ----------- - -The active DiffPy development team is Pavol Juhas, Long Yang, Kevin Knox, -Xiaohao Yang, Michael McKerns, Chris Farrow, and Simon J. L. Billinge. -Former members of the project are Emil Bozin, Wenduo Zhou, Peng Tian, -Timur Davis, Jiwu Liu, and Dmitriy Bryndin. - - -Funding -------- - -The DiffPy project is currently supported by Laboratory Directed -Research and Development (LDRD) Program 12-007 (Complex Modeling) at -Brookhaven National Laboratory (BNL). BNL is funded by the US -Department of Energy Office of Science, Office of Basic Energy Sciences -under contract DE-AC02-98CH10886. Previous funding for DiffPy was -provided by the Distributed Data Analysis of Neutron Scattering -Experiments (DANSE) project funded by the US National Science Foundation -under award DMR-0520547. More information on DANSE can be found -`here `_. The early developments of PDFfit2 were funded by -NSF grant DMR-0304391 in the Billinge-group, and with support from -Michigan State University. Any opinions, findings, and conclusions or -recommendations expressed in this material are those of the author(s) -and do not necessarily reflect the views of the respective funding -bodies. - -Additional Contributions ------------------------- - -The DiffPy team would like to thank multiple users for their help and -comments during the development of this release: Dragica Podgorski, -Valentina Felsen, and Kirsten M. Ø. Jensen. diff --git a/static_root/bugreport/pdfgui/index.html b/bugreport/pdfgui/index.shtml similarity index 91% rename from static_root/bugreport/pdfgui/index.html rename to bugreport/pdfgui/index.shtml index 0ab3b4d5..882fad66 100644 --- a/static_root/bugreport/pdfgui/index.html +++ b/bugreport/pdfgui/index.shtml @@ -16,7 +16,7 @@

    -
    + Reporter: diff --git a/static_root/bugreport/srrietveld/index.html b/bugreport/srrietveld/index.shtml similarity index 91% rename from static_root/bugreport/srrietveld/index.html rename to bugreport/srrietveld/index.shtml index 8afc1e48..71884760 100644 --- a/static_root/bugreport/srrietveld/index.html +++ b/bugreport/srrietveld/index.shtml @@ -16,7 +16,7 @@

    - + Reporter: diff --git a/community.rst b/community.rst deleted file mode 100644 index 40db810d..00000000 --- a/community.rst +++ /dev/null @@ -1,31 +0,0 @@ -Community -========= - -To ensure a bright future for the DiffPy project it is essential to build a strong community -of users and contributing developers. News about updates and new releases will be made at the -`diffpy-users `__ Google group, -as well as it being a place to ask questions -and find answers about using all diffpy programs. -When you sign up, -please leave a short message about why you are requesting to join as we have had spam accounts requesting access -and so we want to know you are a legitimate user. - -.. raw:: html - - - - - - -You can also share your comments, suggestions, praise or complaints by sending email to -`Simon J. L. Billinge `_. - -To report or browse bugs, please visit https://github.com/diffpy -and continue to the relevant project and its Issues. - -Support and Contribute -======================== -We welcome and encourage contributions to the DiffPy project from all members of the community. -If you would like to report a bug, request a feature, or contribute code, please visit the -*Support and Contribute* section found in the README of each DiffPy project repository on GitHub. -All GitHub repositories for DiffPy projects can be found at ``_. \ No newline at end of file diff --git a/community.shtml b/community.shtml new file mode 100644 index 00000000..86ce16d4 --- /dev/null +++ b/community.shtml @@ -0,0 +1,65 @@ + + +

    Community

    + +

    +To ensure a bright future for the DiffPy project it is essential to build a strong +community of users and contributing developers. There are several +Google groups for support and development of DiffPy and related applications. +

    + + + + + + + + + + + + + + + + +
    + diffpy-users + +

    + Help on usage of PDFgui, PDFfit2 and other DiffPy components. + This group should become a knowledge base for PDFgui user tips, + tricks and troubleshooting. Feel free to ask your question here.
    +

    +
    + Subscribe email: + + +
    +
    + diffpy-dev + +

    + For discussions about development and changes of PDFgui, PDFfit2 and + DiffPy library in general. Materials scientists, chemists physicists, + engineers - please contribute by telling us your needs or sharing your + suggestions here. +

    +
    + Subscribe email: + + +
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    + +

    +You can also share your comments, suggestions, praise or complaints by +sending email to +Simon J. Billinge. +

    + +

    +To report or browse bugs, please use the link at the sidebar of this page. +

    + + diff --git a/conf.py b/conf.py deleted file mode 100644 index 8d74899a..00000000 --- a/conf.py +++ /dev/null @@ -1,371 +0,0 @@ -# -*- coding: utf-8 -*- -# -# DiffPy documentation build configuration file, created by -# sphinx-quickstart on Fri Nov 8 15:28:37 2013. -# -# This file is execfile()d with the current directory set to its -# containing dir. -# -# Note that not all possible configuration values are present in this -# autogenerated file. -# -# All configuration values have a default; values that are commented out -# serve to show the default. - -import sys -import os - - -# If extensions (or modules to document with autodoc) are in another directory, -# add these directories to sys.path here. If the directory is relative to the -# documentation root, use os.path.abspath to make it absolute, like shown here. -#sys.path.insert(0, os.path.abspath('.')) - -# -- General configuration ------------------------------------------------ - -# If your documentation needs a minimal Sphinx version, state it here. -#needs_sphinx = '1.2.1' - -# Add any Sphinx extension module names here, as strings. They can be -# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom -# ones. -extensions = [] - -# Add any paths that contain templates here, relative to this directory. -templates_path = ['_templates'] - -# The suffix of source filenames. -source_suffix = '.rst' - -# The encoding of source files. -#source_encoding = 'utf-8-sig' - -# The reST default prolog, included at the beginning of every source file. -rst_prolog = """ -.. include:: _includes/substitutions.rst -""" - -# The master toctree document. -master_doc = 'index' - -# General information about the project. -project = u'DiffPy' -copyright = u'2013, Kevin Knox' - -# The version info for the project you're documenting, acts as replacement for -# |version| and |release|, also used in various other places throughout the -# built documents. -# -# The short X.Y version. -version = '' -# The full version, including alpha/beta/rc tags. -release = '' - -# The language for content autogenerated by Sphinx. Refer to documentation -# for a list of supported languages. -#language = None - -# There are two options for replacing |today|: either, you set today to some -# non-false value, then it is used: -#today = '' -# Else, today_fmt is used as the format for a strftime call. -#today_fmt = '%B %d, %Y' - -# List of patterns, relative to source directory, that match files and -# directories to ignore when looking for source files. -exclude_patterns = ['_build'] - -# The reST default role (used for this markup: `text`) to use for all -# documents. -#default_role = None - -# If true, '()' will be appended to :func: etc. cross-reference text. -#add_function_parentheses = True - -# If true, the current module name will be prepended to all description -# unit titles (such as .. function::). -#add_module_names = True - -# If true, sectionauthor and moduleauthor directives will be shown in the -# output. They are ignored by default. -#show_authors = False - -# The name of the Pygments (syntax highlighting) style to use. -pygments_style = 'sphinx' - -# A list of ignored prefixes for module index sorting. -#modindex_common_prefix = [] - -# If true, keep warnings as "system message" paragraphs in the built documents. -#keep_warnings = False - -# Display all warnings for missing links. -nitpicky = True - -# -- Options for HTML output ---------------------------------------------- - -# The theme to use for HTML and HTML Help pages. See the documentation for -# a list of builtin themes. -html_theme = 'bootstrap' - -# Theme options are theme-specific and customize the look and feel of a theme -# further. For a list of options available for each theme, see the -# documentation. -html_theme_options = { - # Navigation bar title. (Default: ``project`` value) - 'navbar_title': "DiffPy", - - # Tab name for entire site. (Default: "Site") - # 'navbar_site_name': "Products", - - # A list of tuples containing pages or urls to link to. - # Valid tuples should be in the following forms: - # (name, page) # a link to a page - # (name, "/aa/bb", 1) # a link to an arbitrary relative url - # (name, "http://example.com", True) # arbitrary absolute url - # Note the "1" or "True" value above as the third argument to indicate - # an arbitrary url. - 'navbar_links': [ - ("Community", "community"), - ("Publications", "publications") - ], - - # Render the next and previous page links in navbar. (Default: true) - 'navbar_sidebarrel': False, - - # Render the current pages TOC in the navbar. (Default: true) - 'navbar_pagenav': False, - - # Global TOC depth for "site" navbar tab. (Default: 1) - # Switching to -1 shows all levels. - 'globaltoc_depth': 1, - - # Include hidden TOCs in Site navbar? - # - # Note: If this is "false", you cannot have mixed ``:hidden:`` and - # non-hidden ``toctree`` directives in the same page, or else the build - # will break. - # - # Values: "true" (default) or "false" - # 'globaltoc_includehidden': "false", - - # HTML navbar class (Default: "navbar") to attach to
    element. - # For black navbar, do "navbar navbar-inverse" - 'navbar_class': "navbar navbar-inverse", - - # Fix navigation bar to top of page? - # Values: "true" (default) or "false" - 'navbar_fixed_top': "true", - - # Location of link to source. - # Options are "nav" (default), "footer" or anything else to exclude. - 'source_link_position': "", - - # Bootswatch (http://bootswatch.com/) theme. - # - # Options are nothing with "" (default) or the name of a valid theme - # such as "amelia" or "cosmo". - 'bootswatch_theme': "cerulean", - - # Choose Bootstrap version. - # Values: "3" (default) or "2" (in quotes) - 'bootstrap_version': "3", -} - - -# Add any paths that contain custom themes here, relative to this directory. -html_theme_path = ['themes'] - -# The name for this set of Sphinx documents. If None, it defaults to -# " v documentation". -#html_title = None - -# A shorter title for the navigation bar. Default is the same as html_title. -#html_short_title = None - -# The name of an image file (relative to this directory) to place at the top -# of the sidebar. -html_logo = "diffpy_logo_header.png" - -# The name of an image file (within the static path) to use as favicon of the -# docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 -# pixels large. -html_favicon = "diffpy_logo_header.ico" - -# Add any paths that contain custom static files (such as style sheets) here, -# relative to this directory. They are copied after the builtin static files, -# so a file named "default.css" will overwrite the builtin "default.css". -html_static_path = ['_static'] - -# Add any extra paths that contain custom files (such as robots.txt or -# .htaccess) here, relative to this directory. These files are copied -# directly to the root of the documentation. -# NOTE we use rsync in the Makefile to preserve symbolic links. -# html_extra_path = ['static_root'] - -# If not '', a 'Last updated on:' timestamp is inserted at every page bottom, -# using the given strftime format. -#html_last_updated_fmt = '%b %d, %Y' - -# If true, SmartyPants will be used to convert quotes and dashes to -# typographically correct entities. -#html_use_smartypants = True - -# Custom sidebar templates, maps document names to template names. -html_sidebars = { - '**': [], - 'searchresults': [], - } - -# Additional templates that should be rendered to pages, maps page names to -# template names. -#html_additional_pages = {} - -# If false, no module index is generated. -html_domain_indices = False - -# If false, no index is generated. -html_use_index = False - -# If true, the index is split into individual pages for each letter. -#html_split_index = False - -# If true, the reST sources are included in the HTML build as -# _sources/name. The default is True. -html_copy_source = False - -# If true, links to the reST sources are added to the pages. -#html_show_sourcelink = True -html_show_sourcelink = False - -# If true, "Created using Sphinx" is shown in the HTML footer. Default is True. -html_show_sphinx = False - -# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. -html_show_copyright = False - -# If true, an OpenSearch description file will be output, and all pages will -# contain a tag referring to it. The value of this option must be the -# base URL from which the finished HTML is served. -#html_use_opensearch = '' - -# This is the file name suffix for HTML files (e.g. ".xhtml"). -#html_file_suffix = None - -# Output file base name for HTML help builder. -htmlhelp_basename = 'DiffPydoc' - - -# -- Options for LaTeX output --------------------------------------------- - -latex_elements = { -# The paper size ('letterpaper' or 'a4paper'). -#'papersize': 'letterpaper', - -# The font size ('10pt', '11pt' or '12pt'). -#'pointsize': '10pt', - -# Additional stuff for the LaTeX preamble. -#'preamble': '', -} - -# Grouping the document tree into LaTeX files. List of tuples -# (source start file, target name, title, -# author, documentclass [howto, manual, or own class]). -latex_documents = [ - ('index', 'DiffPy.tex', u'DiffPy Documentation', - u'Kevin Knox', 'manual'), -] - -# The name of an image file (relative to this directory) to place at the top of -# the title page. -#latex_logo = None - -# For "manual" documents, if this is true, then toplevel headings are parts, -# not chapters. -#latex_use_parts = False - -# If true, show page references after internal links. -#latex_show_pagerefs = False - -# If true, show URL addresses after external links. -#latex_show_urls = False - -# Documents to append as an appendix to all manuals. -#latex_appendices = [] - -# If false, no module index is generated. -#latex_domain_indices = True - - -# -- Options for manual page output --------------------------------------- - -# One entry per manual page. List of tuples -# (source start file, name, description, authors, manual section). -man_pages = [ - ('index', 'diffpy', u'DiffPy Documentation', - [u'Kevin Knox'], 1) -] - -# If true, show URL addresses after external links. -#man_show_urls = False - - -# -- Options for Texinfo output ------------------------------------------- - -# Grouping the document tree into Texinfo files. List of tuples -# (source start file, target name, title, author, -# dir menu entry, description, category) -texinfo_documents = [ - ('index', 'DiffPy', u'DiffPy Documentation', - u'Kevin Knox', 'DiffPy', 'One line description of project.', - 'Miscellaneous'), -] - -# Documents to append as an appendix to all manuals. -#texinfo_appendices = [] - -# If false, no module index is generated. -#texinfo_domain_indices = True - -# How to display URL addresses: 'footnote', 'no', or 'inline'. -#texinfo_show_urls = 'footnote' - -# If true, do not generate a @detailmenu in the "Top" node's menu. -#texinfo_no_detailmenu = False - -# -- Final customizations ------------------------------------------------- - -from sphinx.transforms import SphinxTransform - -class MakeAbsoluteURIsRelative(SphinxTransform): - - '''Convert local root-anchored references to relative. - - Ensure PDF downloads defined in abbreviations.txt work from any document. - ''' - - default_priority = 750 - - def apply(self): - from sphinx.util.nodes import traverse_parent - from docutils.nodes import reference, document - from docutils.utils import relative_path - srcdir = self.env.srcdir - absolute_reference = lambda o: (isinstance(o, reference) and - o.get('refuri', '')[:1] == '/') - for node in self.document.traverse(absolute_reference): - target = srcdir + node['refuri'] - doc = next(traverse_parent(node, document)) - trel = relative_path(doc['source'], target) - node.replace_attr('refuri', trel) - return - -# end of class MakeAbsoluteURIsRelative - - -def setup(app): - app.add_transform(MakeAbsoluteURIsRelative) - ## uncomment in case we need style overrides - #app.add_css_file('diffpy-styles.css') - return diff --git a/diffpy_logo_header.ico b/diffpy_logo_header.ico deleted file mode 100644 index c5476aef..00000000 Binary files a/diffpy_logo_header.ico and /dev/null differ diff --git a/diffpy_logo_header.png b/diffpy_logo_header.png deleted file mode 100644 index 6cc8bd3b..00000000 Binary files a/diffpy_logo_header.png and /dev/null differ diff --git a/documentation.shtml b/documentation.shtml new file mode 100644 index 00000000..3ff3f5b3 --- /dev/null +++ b/documentation.shtml @@ -0,0 +1,139 @@ + + +

    Documentation

    + +

    User manuals

    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    + PDFgetX3 + + user manual formatted as + HTML, + PDF + and the + tutorial files +
    + PDFgui + + user manual formatted as + HTML, + PDF +
    + tutorial files in a + zip archive +
    + auto-generated + API documentation +
    + PDFfit2 + + user manual not available. + To get started, see + examples + in the source code tree and the help feature in pdffit2. + For a complete reference, consult auto-generated + API, + in particular for the class PdfFit. +

    + Functions and variables are quite similar as + in the old PDFFIT, so its + manual + and + command reference + should help as well. +

    +
    + Structure + + user manual not available. + To get started, see + examples + in the source code tree and the auto-generated + API. + For more information contact the developers or ask at the + diffpy-dev Google group. +
    + +

    Reports

    + +
      +
    • + 2007-08-27 - NSF nugget + describing PDFgui. +
      • +
    + +

    Publications

    + +
      +
    1. +P. Juhás and T. Davis, C. L. Farrow, +S. J. L. Billinge, + +PDFgetX3: A rapid and highly automatable program for +processing powder diffraction data into total scattering pair +distribution functions, +eprint arXiv: 1211.7126, (2012) + + Farrow-jpcm-2007.pdf + +
      2. + +
    2. +C. L. Farrow, P. Juhás, J. W. Liu, +D. Bryndin, E. S. Božin, +J. Bloch, Th. Proffen and +S. J. L. Billinge, + +PDFfit2 and PDFgui: computer programs for studying +nanostructure in crystals, +J. Phys.: Condens. Matter 19, 335219 (2007) + + Farrow-jpcm-2007.pdf + +
      3. + +
    3. +Th. Proffen and S. J. L. Billinge, + +PDFFIT a program for full profile structural refinement of the atomic pair +distribution function, J. Appl. Crystallogr. +32, 572 (1999) + + Proffen-jac-1999.pdf + +
      4. +
    + + diff --git a/download.shtml b/download.shtml new file mode 100644 index 00000000..6b3f0e84 --- /dev/null +++ b/download.shtml @@ -0,0 +1,199 @@ + + +

    Download

    + +

    PDFgetX3

    + +

    +PDFgetX3-academic can be obtained from the + +Columbia flintbox, +provided it will be used for open academic research. +Installation instructions +

    + +

    +If you plan to use PDFgetX3 in any other way, please contact +Beth Kauderer +at Columbia Technology Ventures. +

    + +

    DiffPy Library

    + +Unix, Linux, Mac - +Windows - +Updates - +Subversion - +Releases + +

    License

    + +

    +By downloading and using this software you are agreeing to the following +conditions. +

    + +
    +
+
    + + + +

    Unix, Linux, Mac

    + +

    +The installation of DiffPy requires several external libraries and applications. +Consult the +README.txt +file included with the distribution and make sure these requirements are all +in place. +

    + +

    +The DiffPy components are registered at the Python Package Index (PyPI), +therefore the most straightforward way to install is to execute +easy_install MODULE_NAME. The easy_install command +downloads, unzips and installs the required package together with +its requirements, for example +

    + +
    +    easy_install diffpy.pdfgui
+
    + +

    +would install diffpy.pdfgui together with diffpy.pdffit2 and diffpy.Structure +that are required for its function. The programs can be then started +as pdfgui or pdffit2. +

    + +

    +The easy_install command is a +part of the Python setuptools library. +If it is not available, install the "python-setuptools" +package with the system package manager or use the ".tgz" archive +below, which comes with easy_install included. +

    + +

    +If you prefer to install from local files, download the latest +diffpy-VERSION.tgz archive list below, unpack +and run the enclosed easy_install script +

    + +
    +    tar -xzf diffpy-VERSION.tgz
+    cd diffpy-VERSION
+    ./easy_install diffpy.pdfgui
+
    + +

    +For more detailed installation instructions see +PDFgui manual. +

    + + + +

    Windows

    + +

    +DiffPy is provided as self-installing archive for Windows systems. Download +the latest diffpy-VERSION.exe file below, run it and follow +the prompts. +

    + +

    +The self-installing archive includes a complete installation of Python +that is used to run PDFgui and PDFfit2. Nevertheless, PDFgui (and other +DiffPy components) can be also installed under existing Python tree. +This requires Python 2.5 with several external Python packages, +namely setuptools, numpy, wxPython and matplotlib. +To add PDFgui to an existing Python tree, start Windows command prompt +and run the easy_install script from the Python25/Scripts +directory +

    + +
    +    cd c:\Python25\Scripts
+    ..\python.exe easy_install-script.py diffpy.pdfgui
+
    + +

    +This installs library files under Python25/Lib/site-packages +and executable scripts for pdfgui and pdffit2 under +Python25/Scripts. +

    + + + +

    DiffPy updates

    + +

    +Both Unix and Windows platforms can use the easy_install command +to obtain the latest updates to the code. For example, to upgrade +PDFgui, run +

    + +
    +    easy_install -U diffpy.pdfgui
+
    + +

    +This installs only the changed DiffPy components as they become +available at the DiffPy +package repository. These packages +are smaller and will be updated more frequently than the complete +installation archives. +

    + + + +

    Subversion repository

    + +

    +The latest development sources of DiffPy packages are available in +a public subversion code repository. To install the latest development +version of a DiffPy component called MODULE_NAME, run +

    +
    +    easy_install -U \
+	svn://svn@danse.us/diffraction/diffraction/MODULE_NAME/trunk
+
    + +

    +Another option is to install in a development mode, which is more +convenient for debugging and experimenting with the code. +This can be done as +

    + +
    +    svn checkout \
+	svn://svn@danse.us/diffraction/diffraction/MODULE_NAME
+    cd MODULE_NAME/trunk
+    python setup.py develop
+
    + +

    +The DiffPy subversion repository can be browsed online +here. +

    + + + +

    DiffPy Releases

    + +

    +Please, join in the +community +forum for tips and tricks and feedback. +

    + + + + + Older releases are available in the + downloads archive. + + + + diff --git a/download/.footer.html b/download/.footer.html new file mode 100644 index 00000000..cde7fb57 --- /dev/null +++ b/download/.footer.html @@ -0,0 +1,6 @@ + +Description column shows number of downloads. + + + + diff --git a/download/.header.html b/download/.header.html new file mode 100644 index 00000000..f017f24d --- /dev/null +++ b/download/.header.html @@ -0,0 +1,15 @@ + + + + + + + DiffPy releases + + + + + + +

    DiffPy releases

    + diff --git a/download/archive/.footer.html b/download/archive/.footer.html new file mode 100644 index 00000000..cde7fb57 --- /dev/null +++ b/download/archive/.footer.html @@ -0,0 +1,6 @@ + +Description column shows number of downloads. + + + + diff --git a/download/archive/.header.html b/download/archive/.header.html new file mode 100644 index 00000000..6a62a01f --- /dev/null +++ b/download/archive/.header.html @@ -0,0 +1,15 @@ + + + + + + + DiffPy archived releases + + + + + + +

    DiffPy archived releases

    + diff --git a/favicon.ico b/favicon.ico new file mode 100644 index 00000000..b68814ec Binary files /dev/null and b/favicon.ico differ diff --git a/images/PDFgui_screenshot_707_500x369.png b/images/PDFgui_screenshot_707_500x369.png new file mode 100644 index 00000000..2c0130cd Binary files /dev/null and b/images/PDFgui_screenshot_707_500x369.png differ diff --git a/images/PDFgui_screenshot_small.png b/images/PDFgui_screenshot_small.png deleted file mode 100644 index b9d799ab..00000000 Binary files a/images/PDFgui_screenshot_small.png and /dev/null differ diff --git a/images/blank1x1.png b/images/blank1x1.png deleted file mode 100644 index 1914264c..00000000 Binary files a/images/blank1x1.png and /dev/null differ diff --git a/images/checkerboard.png b/images/checkerboard.png new file mode 100644 index 00000000..ac3f8176 Binary files /dev/null and b/images/checkerboard.png differ diff --git a/images/danse_logo.jpg b/images/danse_logo.jpg new file mode 100644 index 00000000..3db54fba Binary files /dev/null and b/images/danse_logo.jpg differ diff --git a/images/diffpy_icon.ico b/images/diffpy_icon.ico new file mode 100644 index 00000000..b68814ec Binary files /dev/null and b/images/diffpy_icon.ico differ diff --git a/logos/diffpy_logo.png b/images/diffpy_logo.png similarity index 100% rename from logos/diffpy_logo.png rename to images/diffpy_logo.png diff --git a/images/diffpycmi_screenshot.png b/images/diffpycmi_screenshot.png deleted file mode 100644 index 579cf113..00000000 Binary files a/images/diffpycmi_screenshot.png and /dev/null differ diff --git a/images/github_screenshot.png b/images/github_screenshot.png deleted file mode 100644 index b08eb345..00000000 Binary files a/images/github_screenshot.png and /dev/null differ diff --git a/images/labpdfproc.png b/images/labpdfproc.png deleted file mode 100644 index 63619f58..00000000 Binary files a/images/labpdfproc.png and /dev/null differ diff --git a/images/morph.png b/images/morph.png deleted file mode 100644 index 825ac9b4..00000000 Binary files a/images/morph.png and /dev/null differ diff --git a/images/mpdf_screenshot.png b/images/mpdf_screenshot.png deleted file mode 100644 index 3a0127ab..00000000 Binary files a/images/mpdf_screenshot.png and /dev/null differ diff --git a/images/nsf_logo.png b/images/nsf_logo.png new file mode 100644 index 00000000..a97925f2 Binary files /dev/null and b/images/nsf_logo.png differ diff --git a/images/pdficon_small.gif b/images/pdficon_small.gif new file mode 100644 index 00000000..bb5edcac Binary files /dev/null and b/images/pdficon_small.gif differ diff --git a/images/pdficon_small.png b/images/pdficon_small.png deleted file mode 100644 index 2a2fe6fa..00000000 Binary files a/images/pdficon_small.png and /dev/null differ diff --git a/images/pdfmorph.png b/images/pdfmorph.png deleted file mode 100644 index aad99dd4..00000000 Binary files a/images/pdfmorph.png and /dev/null differ diff --git a/images/pdfprimer.png b/images/pdfprimer.png deleted file mode 100644 index 0833dc73..00000000 Binary files a/images/pdfprimer.png and /dev/null differ diff --git a/images/spacer.png b/images/spacer.png new file mode 100644 index 00000000..8a7f9854 Binary files /dev/null and b/images/spacer.png differ diff --git a/images/srmise_screenshot.png b/images/srmise_screenshot.png deleted file mode 100644 index 03c9ab8e..00000000 Binary files a/images/srmise_screenshot.png and /dev/null differ diff --git a/images/xPDFsuite.png b/images/xPDFsuite.png deleted file mode 100644 index 91b52faf..00000000 Binary files a/images/xPDFsuite.png and /dev/null differ diff --git a/images/xinterpdf.png b/images/xinterpdf.png deleted file mode 100644 index f415044d..00000000 Binary files a/images/xinterpdf.png and /dev/null differ diff --git a/inc_footer.html b/inc_footer.html new file mode 100644 index 00000000..364b4c6b --- /dev/null +++ b/inc_footer.html @@ -0,0 +1,28 @@ + + + + + + + + + + + + + + + + + + + + + +
    + If you have questions or remarks about this site, please contact + Simon J. Billinge. +
    + + + diff --git a/inc_header.html b/inc_header.html new file mode 100644 index 00000000..ed5ff7db --- /dev/null +++ b/inc_header.html @@ -0,0 +1,116 @@ + + + + + + + DiffPy - Diffraction in Python + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    + +
    + + + DANSE logo + + diffpy logo + DiffPy + + NSF logo + +
    Python Libraries for Diffraction
    + + + + + + + + + + + + or other required elements. - thead: [ 1, "
    + + + + +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    Home
    Community
    Documentation
    Download
    Report Bugs
    + + + + +
    +
    + +
    +
    		+ + + or other required elements. - thead: [ 1, "
    + + diff --git a/index.rst b/index.rst deleted file mode 100644 index b91e6dbe..00000000 --- a/index.rst +++ /dev/null @@ -1,88 +0,0 @@ -.. sphinxTestRun documentation master file, created by - sphinx-quickstart on Fri Nov 8 15:28:37 2013. - You can adapt this file completely to your liking, but it should at least - contain the root `toctree` directive. - -.. _home: - - -DiffPy - Atomic Structure Analysis in Python -============================================ -A free and open source software project to provide python software for -diffraction analysis and the study of the atomic structure of materials. - - -.. figure:: logos/CMI-logo.png - :align: center - -.. image:: images/blank1x1.png - -.. include:: abbreviations.txt - - -The project is currently maintained by the Billinge Group and DiffPy community members. - -Many parts of the code were developed under the diffraction part of the DANSE_ project, -a software construction project funded by the `National Science Foundation`_ to provide -data analysis software tools for neutron scattering experiments. The DiffPy project has -been a collaborative effort, centered in many institutions, including Brookhaven National -Laboratory, Columbia University, and Michigan State University. - - - - -.. _danse: https://www.its.caltech.edu/~matsci/btf/DANSE_web_page.html - -.. _national science foundation: https://www.nsf.gov/ - -.. _department of energy, office of basic energy sciences: https://science.energy.gov/bes/ - -.. _brookhaven national laboratory: https://www.bnl.gov/ - -About DiffPy ----------------- - -.. image:: images/pdfprimer.png - :align: right - :width: 200 - - -DiffPy is the home of a number of software products for atomic structure -analysis. A large portion of the DiffPy project consists of tools for atomic pair -distribution function (PDF) analysis. For detailed instructions -and in-depth examples of modeling Pair Distribution Function data, we highly recommend the book, - - -*Atomic Pair Distribution Function Analysis: A Primer* by Simon J. L. Billinge and Kirsten M. Ø. Jensen (Oxford University Press, 2023). - - -To purchase this book, please visit `this link `_. - -The DiffPy project is also home to many other software tools for analysis of scientific data. -One of which is diffpy.cmi, a general-purpose -complex modeling infrastructure for analysis of *any* type of data. -For more information about diffpy.cmi, please visit the -`diffpy.cmi documentation `_. - -.. toctree:: - :hidden: - - community - publications - NSFnugget - acknowledgements - products/diffpycmi/index - products/diffpycmi/install - products/diffpycmi/contents - products/diffpycmi/cmi_exchange - products/diffpycmi/license - products/diffpycmi/updatesources - products/diffpycmi/contributecode - products/xPDFsuite - products/pdfgui - products/pdfgetx - products/pythonpackages - products/SrMise - products/mPDF - products/xinterpdf - products/utils \ No newline at end of file diff --git a/index.shtml b/index.shtml new file mode 100644 index 00000000..0dd41720 --- /dev/null +++ b/index.shtml @@ -0,0 +1,157 @@ + + +

    Welcome to the DiffPy project.

    + +

    +This is an open-source project to develop python software modules +for diffraction and the study of atomic structure of materials. +DiffPy is developed as part of +DANSE, +a software construction project funded by the +National Science Foundation +to provide data +analysis software tools for neutron scattering experiments that +will be carried out at the + + Spallation Neutron Source + +at +Oak Ridge National Laboratory. +

    + + +

    News

    + +
      +
    • + 2013-02-05 - initial release of the PDFgetX3 program. +
      • +
    + + +

    Products

    + +

    PDFgetX3

    + +

    +PDFgetX3 is a command-line utility for +converting X-ray powder diffraction data to atomic pair +distribution functions (PDF). PDFgetX3 is easy to use, fast +and convenient for automated batch processing. The +interactive mode provides complete access to all parameters +and intermediate results, as well as live-plotting feature for +parameters tuning and visualization of their effects on the +results. PDFgetX3 can be used either as a standalone +application or as a Python library of PDF-processing +functions. +The software is free for open academic research, but requires +paid license for commercial use. +

    + + +

    DiffPy library

    +

    +A library of Python modules for carrying out structure analysis tasks +from diffraction data. The modules are at different stages of development +and some are not yet ready for usage by non-experts. Nevertheless, the +components listed below should be stable enough and hopefully useful +to a broader non-expert community. +

    + + +

    DiffPy components

    +
      +
    • + PDFgui - a program for full-profile fitting of the atomic + pair distribution function (PDF) derived from x-ray or neutron diffraction data. + This is a graphical front end for the PDFfit2 refinement program, + with built in graphical and structure visualization capabilities. +
      • +
    • + PDFfit2 - the structure refinement engine for fitting + structural models to experimentally derived PDFs. It is used as calculation + engine for PDFgui, but can be used separately in simple Python scripts or + as a command-line program. +
      • + +
    • + Structure - simple storage and manipulation + of crystal structure data. Supports reading and writing in several structure + formats, coordinate transformations, symmetry expansion and generation of + symmetry constraints. +
      • +
    + +

    References

    + +

    +PDFgui and PDFfit2 are intended for scientific research that will be +published in the open literature and are free to use. +Please cite the following paper in your scientific publications +using one of these programs: +

    + +
    + C. L. Farrow, P. Juhás, J. W. Liu, + D. Bryndin, E. S. Božin, J. Bloch, + Th. Proffen and S. J. L. Billinge, + +PDFfit2 and PDFgui: computer programs for studying +nanostructure in crystals, +J. Phys.: Condens. Matter 19, 335219 (2007) + + Farrow-jpcm-2007.pdf +. +

    +
    + +

    +For publications using the PDFgetX3 program please cite +

    + +
    +P. Juhás and T. Davis, C. L. Farrow, +S. J. L. Billinge, + +PDFgetX3: A rapid and highly automatable program for +processing powder diffraction data into total scattering pair +distribution functions, +J. Appl. Cryst. 46, 560-566 (2013) + + Juhas-jac-2013.pdf +. +
    + +

    Acknowledgements

    + +

    Developers

    +

    +The active DiffPy team is Pavol Juhás, Chris Farrow, Emil Božin, Simon Billinge, +Wenduo Zhou, Peng Tian and Timur Davis. The project was started at the Department +of Physics and Astronomy, Michigan State University. The development team +has now mostly relocated to the Department of Applied Physics and Applied +Mathematics at Columbia University in the city of New York. The former members +of the project while at Michigan State were Jiwu Liu and Dmitriy Bryndin. +

    + +

    Funding

    +

    +This software was developed as part of the +Distributed Data Analysis of Neutron Scattering Experiments (DANSE) +project funded by the US National Science Foundation under grant +DMR-0520547. More information on DANSE can be +found at http://danse.us. The early developments of PDFfit2 were funded +by NSF grant DMR-0304391 in the Billinge-group, and with support from +Michigan State University. Any opinions, findings, and conclusions +or recommendations +expressed in this material are those of the author(s) and do not +necessarily reflect the views of the respective funding bodies. +

    + +

    Other

    +

    + www.vim.org + for splendid editor and inspiration for this website. +

    + + diff --git a/logos/BNL_logo.jpg b/logos/BNL_logo.jpg deleted file mode 100644 index 34cf2118..00000000 Binary files a/logos/BNL_logo.jpg and /dev/null differ diff --git a/logos/CMI-logo.png b/logos/CMI-logo.png deleted file mode 100644 index 12a98cb2..00000000 Binary files a/logos/CMI-logo.png and /dev/null differ diff --git a/logos/DOE_logo.png b/logos/DOE_logo.png deleted file mode 100644 index dea2af55..00000000 Binary files a/logos/DOE_logo.png and /dev/null differ diff --git a/logos/diffpy_logo_big.png b/logos/diffpy_logo_big.png deleted file mode 100644 index 6f8a571a..00000000 Binary files a/logos/diffpy_logo_big.png and /dev/null differ diff --git a/logos/diffpy_logo_header.png b/logos/diffpy_logo_header.png deleted file mode 100644 index 6cc8bd3b..00000000 Binary files a/logos/diffpy_logo_header.png and /dev/null differ diff --git a/logos/diffpy_logo_header_new.png b/logos/diffpy_logo_header_new.png deleted file mode 100644 index 86d39ee3..00000000 Binary files a/logos/diffpy_logo_header_new.png and /dev/null differ diff --git a/media/.htaccess b/media/.htaccess new file mode 100644 index 00000000..f480c2f0 --- /dev/null +++ b/media/.htaccess @@ -0,0 +1,2 @@ +IndexOptions FancyIndexing SuppressIcon NameWidth=* +# IndexIgnore .. diff --git a/nuggetDANSE0708.html b/nuggetDANSE0708.html new file mode 100644 index 00000000..af671412 --- /dev/null +++ b/nuggetDANSE0708.html @@ -0,0 +1,108 @@ + + + + + DANSE-diffraction NSF nugget, 2007-08-27 + + + + + + + + + +

    +Enabling new science in nanoscale structure characterization of complex +materials +

    + +

    + C. L. Farrow, P. Juhás, J. W. Liu, D. Bryndin, E. S. Božin, J. Bloch, and + S. J. L. Billinge (Michigan State University) +

    + +

    +

    +To understand and +control the properties of materials it is necessary to have a +detailed knowledge of their atomic structure. Increasingly, we are +interested in exploiting materials with complex structures on the +nanoscale, which presents special experimental challenges as +crystallography, the standard approach to structure determination, +loses its power on these length-scales. Alternative methods +sensitive to nanoscale order are under development. The diffraction +sub-group of the DANSE project recently released a new software tool +that will have a large impact in nanostructure characterization using +x-ray and neutron diffraction. +

    +

    + +
    + +PDFgui screenshot + +

    + Fig 1: Screen-shot of PDFgui during a refinement of multiple data-sets +

    +
    + +

    +The diffraction data are Fourier transformed to obtain the +atomic pair distribution function (PDF) and analyzed by +quantitatively fitting nanostructure models to the data. An example +of the tool, PDFgui [1], +is shown in the accompanying +flash movie. +It is being used to study the evolution of local structural +parameters through a structural phase transition. Neutron-derived +PDFs have been collected over a temperature range from room +temperature to 880 K for the strongly correlated electron material, +LaMnO3. PDFgui allows rapid setup of individual and +multiple refinements. The first refinement is initialized using the +intuitive gui (graphical user interface) tools, and the structure +visualized using the built-in structure visualizing tool. At this +point the temperature-series macro is chosen allowing multiple (in +this case, 10) structure refinements to be selected and refined +automatically. The flexible built-in plotting capabilities allows a +refined parameter to be plotted during this process as shown. The +structural phase transition is clearly visible as a cusp in this +parameter, which happens to be a thermal factor on oxygen ions in the +structure. This program will be implemented at the POWGEN3 and NOMAD +diffractometers at SNS with macros to allow real-time parametric +refinements similar to those shown, allowing researchers to make +scientific discoveries during data collection, at the beam-time, and +not a-posteriori after the beamtime is over. PDFgui has +numerous extensions, beyond those shown in the movie that are +described in more detail in Ref. [1]. +The beta version of PDFgui is +now in public release, available for Windows, Linux and Mac OSX +platforms, and in the first month has been downloaded 220 times. More +information can be found at +http://www.diffpy.org. +

    + +

    +
      +
    1. + C. L. Farrow, P. Juhás, J. W. Liu, + D. Bryndin, E. S. Božin, + J. Bloch, Th. Proffen and + S. J. L. Billinge, + + PDFfit2 and PDFgui: computer programs for studying + nanostructure in crystals, + J. Phys.: Condens. Matter 19, 335219 (2007). +
      2. +
    + + + diff --git a/packages/.footer.html b/packages/.footer.html new file mode 100644 index 00000000..cde7fb57 --- /dev/null +++ b/packages/.footer.html @@ -0,0 +1,6 @@ + +Description column shows number of downloads. + + + + diff --git a/packages/.header.html b/packages/.header.html new file mode 100644 index 00000000..ed3dd58f --- /dev/null +++ b/packages/.header.html @@ -0,0 +1,15 @@ + + + + + + + DiffPy package repository + + + + + + +

    DiffPy package repository

    + diff --git a/packages/.htaccess b/packages/.htaccess new file mode 100644 index 00000000..c71aaac2 --- /dev/null +++ b/packages/.htaccess @@ -0,0 +1,10 @@ +IndexOptions FancyIndexing SuppressIcon NameWidth=* VersionSort +IndexOptions SuppressHTMLPreamble + +HeaderName .header.html +ReadmeName .footer.html + +# IndexIgnore .. + +# DESCRIPTIONS BEGIN +# DESCRIPTIONS END diff --git a/products/PDFgui_LICENSE.txt b/products/PDFgui_LICENSE.txt deleted file mode 100644 index 296489bb..00000000 --- a/products/PDFgui_LICENSE.txt +++ /dev/null @@ -1,74 +0,0 @@ -Copyright Policy - -This software was originally developed by the Billinge group as part -of the Distributed Data Analysis of Neutron Scattering Experiments -(DANSE) project funded by the US National Science Foundation under -grant DMR-0520547. Developments of PDFfit2 were funded by NSF grant -DMR-0304391 in the Billinge group, and with support from Michigan State -University and Columbia University. Any opinions, findings, and conclusions -or recommendations expressed in this material are those of the author(s) -and do not necessarily reflect the views of the respective funding bodies. -Subsequent development was done in the Billinge group at Columbia University -and then in collaboration between the Billinge group at Columbia and Pavol -Juhas at Brookhaven National Laboratory. Moving forward, PDFgui will be -maintained as a community project with contributions welcomed from many people. - -Up to the release 1.1.2 (February 2017) the copyright was held by -the institutions that hosted the work as follows: -Copyright 2006-2007, Board of Trustees of Michigan State University, -Copyright 2008-2012, Board of Trustees of Columbia University in the -city of New York. -Copyright 2013, Brookhaven National Laboratory (Copyright holder -indicated in each source file). - -As of February 2017, and the 1.1.2 release, PDFgui has moved to a shared copyright model. - -PDFgui uses a shared copyright model. Each contributor maintains copyright over their -contributions to PDFgui. But, it is important to note that these contributions are -typically only changes to the repositories. Thus, the PDFgui source code, in its entirety, -is not the copyright of any single person or institution. Instead, it is the collective -copyright of the entire PDFgui Development Team. If individual contributors want to -maintain a record of what changes/contributions they have specific copyright on, they -should indicate their copyright in the commit message of the change, when they commit -the change to one of the PDFgui repositories. - -The PDFgui Development Team is the set of all contributors to the PDFgui project. -A full list can be obtained from the git version control logs. - -For more information please visit the project web-page: - http://www.diffpy.org/ -or email Prof. Simon Billinge at sb2896@columbia.edu - - -License Agreement - -Redistribution and use in source and binary forms, with or without -modification, are permitted provided that the following conditions -are met: - - * Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - * Neither the name of the copyright holder nor the names of its - contributors may be used to endorse or promote products derived from - this software without specific prior written permission. - -THIS SOFTWARE IS PROVIDED BY COPYRIGHT HOLDER "AS IS". COPYRIGHT HOLDER -EXPRESSLY DISCLAIMS ANY AND ALL WARRANTIES AND CONDITIONS, EITHER -EXPRESS OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED -WARRANTIES OF MERCHANTABILITY, TITLE, FITNESS, ADEQUACY OR SUITABILITY -FOR A PARTICULAR PURPOSE, AND ANY WARRANTIES OF FREEDOM FROM -INFRINGEMENT OF ANY DOMESTIC OR FOREIGN PATENT, COPYRIGHTS, TRADE -SECRETS OR OTHER PROPRIETARY RIGHTS OF ANY PARTY. IN NO EVENT SHALL -COPYRIGHT HOLDER BE LIABLE TO ANY PARTY FOR ANY DIRECT, INDIRECT, -INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT -NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF -USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON -ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT -(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF -THIS SOFTWARE OR RELATING TO THIS AGREEMENT, EVEN IF ADVISED OF THE -POSSIBILITY OF SUCH DAMAGE. diff --git a/products/SrMise.rst b/products/SrMise.rst deleted file mode 100644 index d4dc7e75..00000000 --- a/products/SrMise.rst +++ /dev/null @@ -1,188 +0,0 @@ -########## -SrMise -########## - -.. include:: ../abbreviations.txt - -SrMise is the DiffPy tool for peak extraction and peak fitting from atomic -pair distribution functions (PDFs). It implements a powerful -information-theoretic multimodeling approach based on the Akaike information -criterion (AIC) to generate and rank physically plausible sets of peaks even in -the absence of a constraining structural model. This approach to peak -extraction is premised upon PDFs reporting accurate experimentally-determined -uncertainties, and when these are unavailable results are contingent on a -user-specified *ad hoc* uncertainty. PDFs mixing positive and negative -peaks, such as some neutron PDFs, are compatible with the SrMise peak fitting, -but not peak extraction, capability. - -The software aids rapid analysis of crystalline and nanostructured -materials. Reasonable values for nearly all program parameters can be -estimated directly from the data, although the PDF baseline of non-crystalline -materials requires user judgment. Crystalline (linear) and spherical -nanoparticle baselines are included, and SrMise also supports arbitrary -polynomial and interpolated baselines. Other key features include peak -functions incorporating termination effects, standard uncertainty reporting, and -a framework enabling a flexible AIC-driven multimodeling analysis. A -command-line tool exposes basic peak extraction functionality, with full -functionality available through Python scripting. - - -.. figure:: ../images/srmise_screenshot.png - :align: center - -This is an alpha release of SrMise, and the capabilities and documentation of -the project will evolve. In particular, the multimodeling API is expected to -change significantly in a future version. The DiffPy team encourages -investigators to use the software even at this early stage, and invites -feedback and suggestions. - - -Getting Started -================= - -The diffpy.srmise package requires Python 2.6 or 2.7 and the following software: - -* ``setuptools`` - software distribution tools for Python -* ``NumPy`` - numerical mathematics and fast array operations for Python -* ``SciPy`` - scientific libraries for Python -* ``matplotlib`` - python plotting library - -See the :doc:`SrMise license ` for terms and conditions of use. -Detailed installation instructions for the :ref:`Windows `, -:ref:`Mac OS X `, and :ref:`Linux ` -platforms follow. - -.. _windows_install: - -Windows -------- - -Several prebuilt Python distributions for Windows include all the -prerequisite software required to run SrMise, and installing one of these is the -simplest way to get started. These distributions are usually free for -individual and/or academic use, but some also have commercial version. Links to -executables, installation instructions, and licensing information -for some popular options are listed below. - -* `Anaconda`_ -* `Enthought Canopy `_ -* `Python(x,y) `_ -* `WinPython `_ - -.. _Anaconda: anaconda-download_ - -Alternately, individual Windows executables for Python and the required -components can be downloaded and installed. The official Windows releases of -Numpy and SciPy do not currently support 64-bit Python installations, so be -sure to download the 32-bit versions of these packages. - -* `Python 2.6/2.7 `_ -* `NumPy `_ -* `SciPy `_ -* `matplotlib `_ - -After installing Python and the required packages, we can install SrMise. -The simplest way to obtain diffpy.srmise on Windows systems -is using ``pip`` to download and install the latest release from the -`Python Package Index `_ (PyPI). To do so, open a -command window by running ``cmd`` from the Start Menu's application search box -(Windows 7/8/10) or Run command (Windows Vista and earlier). Verify that the -``pip`` program is installed by running :: - - pip --version - -If this command is not found, download and run -`get-pip.py `_, which will install both it -and setuptools. For example, if your Windows user name is ``MyName`` and you -download the file to the desktop, you would run the following from the command -line: :: - - cd C:\Users\MyName\Desktop - python get-pip.py - -Finally, install the latest version of SrMise by running :: - - pip install diffpy.srmise - - -.. _macosx_install: - -Mac OS X --------- - -For Mac OS X systems with the MacPorts package manager, the required -software can be installed with :: - - sudo port install \ - python27 py27-setuptools py27-numpy py27-scipy py27-matplotlib - -When installing for MacPorts, make sure the MacPorts bin directory is the first -in the system PATH and that python27 is selected as the default Python version -in MacPorts:: - - sudo port select --set python python27 - -The simplest way to obtain diffpy.srmise on Mac OS X systems -is using ``pip`` to download and install the latest release from -`PyPI `_. :: - - sudo pip install diffpy.srmise - -If you prefer to install from sources, download them from the -`GitHub `__ or -`PyPI `__ pages for SrMise. -Uncompress them to a directory, and from that directory run :: - - sudo python setup.py install - -This installs diffpy.srmise for all users in the default system location. If -administrator (root) access is not available, see the usage info from -``python setup.py install --help`` for options to install to user-writable -directories. - -.. _linux_install: - -Linux ------ - -On Ubuntu and Debian Linux, the required software can easily be installed using -the system package manager:: - - sudo apt-get install \ - python-setuptools python-numpy python-scipy python-matplotlib - -Similarly, on Fedora:: - - sudo yum install python-setuptools numpy scipy python-matplotlib - -For other Linux distributions consult the appropriate package manager. - -The simplest way to obtain diffpy.srmise on Linux systems -is using ``pip`` to download and install the latest release from -`PyPI `_. :: - - sudo pip install diffpy.srmise - -If you prefer to install from sources, download them from the -`GitHub `__ or -`PyPI `__ pages for SrMise. -Uncompress them to a directory, and from that directory run :: - - sudo python setup.py install - -This installs diffpy.srmise for all users in the default system location. If -administrator (root) access is not available, see the usage info from -``python setup.py install --help`` for options to install to user-writable -directories. - - -What next? -============ - -Explore the SrMise -`tutorial `_! - -.. toctree:: - :hidden: - - SrMiselicense diff --git a/products/SrMise_LICENSE.txt b/products/SrMise_LICENSE.txt deleted file mode 100644 index 23b33313..00000000 --- a/products/SrMise_LICENSE.txt +++ /dev/null @@ -1,46 +0,0 @@ -If you use this program to do productive scientific research that -leads to publication, we ask that you acknowledge use of the -program by citing the following paper in your publication: - - L. Granlund, S.J.L. Billinge, P.M. Duxbury, Algorithm for - systematic peak extraction from atomic pair distribution - functions, Acta Crystallographica A 71(4), 392-409 (2015). - doi:10.1107/S2053273315005276 - -Copyright 2014-2015, Board of Trustees of Michigan State University - -For more information please visit the diffpy web-page at - http://www.diffpy.org -or email Luke Granlund at luke.r.granlund@gmail.com, or Prof. Simon -Billinge at sb2896@columbia.edu. - -Redistribution and use in source and binary forms, with or without -modification, are permitted provided that the following conditions -are met: - - * Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - * Neither the name of the copyright holder nor the names of its - contributors may be used to endorse or promote products derived from - this software without specific prior written permission. - -THIS SOFTWARE IS PROVIDED BY COPYRIGHT HOLDER "AS IS". COPYRIGHT -HOLDER EXPRESSLY DISCLAIMS ANY AND ALL WARRANTIES AND CONDITIONS, -EITHER EXPRESS OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE -IMPLIED WARRANTIES OF MERCHANTABILITY, TITLE, FITNESS, ADEQUACY OR -SUITABILITY FOR A PARTICULAR PURPOSE, AND ANY WARRANTIES OF FREEDOM -FROM INFRINGEMENT OF ANY DOMESTIC OR FOREIGN PATENT, COPYRIGHTS, -TRADE SECRETS OR OTHER PROPRIETARY RIGHTS OF ANY PARTY. IN NO EVENT -SHALL COPYRIGHT HOLDER BE LIABLE TO ANY PARTY FOR ANY DIRECT, -INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES -(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR -SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) -HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, -STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) -ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE OR RELATING TO -THIS AGREEMENT, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. diff --git a/products/SrMiselicense.rst b/products/SrMiselicense.rst deleted file mode 100644 index af833fb7..00000000 --- a/products/SrMiselicense.rst +++ /dev/null @@ -1,6 +0,0 @@ -.. this page only contains the LICENSE text for SrMise - -.. title:: SrMise License - -.. literalinclude:: SrMise_LICENSE.txt - :language: text diff --git a/products/Utils_LICENSE.txt b/products/Utils_LICENSE.txt deleted file mode 100644 index 1a431d59..00000000 --- a/products/Utils_LICENSE.txt +++ /dev/null @@ -1,121 +0,0 @@ -OPEN SOURCE LICENSE AGREEMENT -============================= - -Copyright (c) 1989, 1991 Free Software Foundation, Inc. -Copyright (c) 2006, The Regents of the University of California through Lawrence Berkeley National Laboratory -Copyright (c) 2006-2007, Board of Trustees of Michigan State University -Copyright (c) 2008-2012, The Trustees of Columbia University in the City of New York -Copyright (c) 2009-2011, University of Tennessee -Copyright (c) 2014, Australian Synchrotron Research Program Inc., ("ASRP") -Copyright (c) 2014-2019, Brookhaven Science Associates, Brookhaven National Laboratory -Copyright (c) 2019-2024, The Trustees of Columbia University in the City of New York. -All rights reserved. - -The "DiffPy-CMI" is distributed subject to the following license conditions: - -SOFTWARE LICENSE AGREEMENT - -Software: DiffPy-CMI - -(1) The "Software", below, refers to the aforementioned DiffPy-CMI (in either -source code, or binary form and accompanying documentation). - -Part of the software was derived from the DANSE, ObjCryst++ (with permission), -PyCifRW, Python periodictable, CCTBX, and SasView open source projects, of -which the original Copyrights are contained in each individual file. - -Each licensee is addressed as "you" or "Licensee." - -(2) The copyright holders shown above and their third-party Licensors hereby -grant licensee a royalty-free nonexclusive license, subject to the limitations -stated herein and U.S. Government license rights. - -(3) You may modify and make a copy or copies of the software for use within -your organization, if you meet the following conditions: - - (a) Copies in source code must include the copyright notice and this - software license agreement. - - (b) Copies in binary form must include the copyright notice and this - Software License Agreement in the documentation and/or other materials - provided with the copy. - -(4) You may modify a copy or copies of the Software or any portion of it, thus -forming a work based on the Software, and distribute copies of such work -outside your organization, if you meet all of the following conditions: - - (a) Copies in source code must include the copyright notice and this - Software License Agreement; - - (b) Copies in binary form must include the copyright notice and this - Software License Agreement in the documentation and/or other materials - provided with the copy; - - (c) Modified copies and works based on the Software must carry prominent - notices stating that you changed specified portions of the Software; - - (d) Neither the name of Brookhaven Science Associates or Brookhaven - National Laboratory nor the names of its contributors may be used to - endorse or promote products derived from this software without specific - written permission. - -(5) Portions of the Software resulted from work developed under a U.S. -Government contract and are subject to the following license: -The Government is granted for itself and others acting on its behalf a -paid-up, nonexclusive, irrevocable worldwide license in this computer software -to reproduce, prepare derivative works, and perform publicly and display -publicly. - -(6) WARRANTY DISCLAIMER. THE SOFTWARE IS SUPPLIED "AS IS" WITHOUT -WARRANTY OF ANY KIND. THE COPYRIGHT HOLDERS, THEIR THIRD PARTY -LICENSORS, THE UNITED STATES, THE UNITED STATES DEPARTMENT OF ENERGY, AND -THEIR EMPLOYEES: (1) DISCLAIM ANY WARRANTIES, EXPRESS OR IMPLIED, INCLUDING -BUT NOT LIMITED TO ANY IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A -PARTICULAR PURPOSE, TITLE OR NON-INFRINGEMENT, (2) DO NOT ASSUME ANY LEGAL -LIABILITY OR RESPONSIBILITY FOR THE ACCURACY, COMPLETENESS, OR USEFULNESS OF -THE SOFTWARE, (3) DO NOT REPRESENT THAT USE OF THE SOFTWARE WOULD NOT INFRINGE -PRIVATELY OWNED RIGHTS, (4) DO NOT WARRANT THAT THE SOFTWARE WILL FUNCTION -UNINTERRUPTED, THAT IT IS ERROR-FREE OR THAT ANY ERRORS WILL BE CORRECTED. - -(7) LIMITATION OF LIABILITY. IN NO EVENT WILL THE COPYRIGHT HOLDERS, THEIR -THIRD PARTY LICENSORS, THE UNITED STATES, THE UNITED STATES DEPARTMENT OF -ENERGY, OR THEIR EMPLOYEES: BE LIABLE FOR ANY INDIRECT, INCIDENTAL, -CONSEQUENTIAL, SPECIAL OR PUNITIVE DAMAGES OF ANY KIND OR NATURE, INCLUDING -BUT NOT LIMITED TO LOSS OF PROFITS OR LOSS OF DATA, FOR ANY REASON WHATSOEVER, -WHETHER SUCH LIABILITY IS ASSERTED ON THE BASIS OF CONTRACT, TORT (INCLUDING -NEGLIGENCE OR STRICT LIABILITY), OR OTHERWISE, EVEN IF ANY OF SAID PARTIES HAS -BEEN WARNED OF THE POSSIBILITY OF SUCH LOSS OR DAMAGES. - -Brookhaven National Laboratory Notice -===================================== - -Acknowledgment of sponsorship ------------------------------ - -This software was produced by the Brookhaven National Laboratory, under -Contract DE-AC02-98CH10886 with the Department of Energy. - -Government disclaimer of liability ----------------------------------- - -Neither the United States nor the United States Department of Energy, nor -any of their employees, makes any warranty, express or implied, or assumes -any legal liability or responsibility for the accuracy, completeness, or -usefulness of any data, apparatus, product, or process disclosed, or -represents that its use would not infringe privately owned rights. - -Brookhaven disclaimer of liability ----------------------------------- - -Brookhaven National Laboratory makes no representations or warranties, -express or implied, nor assumes any liability for the use of this software. - -Maintenance of notice ---------------------- - -In the interest of clarity regarding the origin and status of this -software, Brookhaven National Laboratory requests that any recipient of it -maintain this notice affixed to any distribution by the recipient that -contains a copy or derivative of this software. - -END OF LICENSE diff --git a/products/Utilslicense.rst b/products/Utilslicense.rst deleted file mode 100644 index 034894ac..00000000 --- a/products/Utilslicense.rst +++ /dev/null @@ -1,6 +0,0 @@ -.. this page only contains the LICENSE text for Utils - -.. title:: Utils License - -.. literalinclude:: Utils_LICENSE.txt - :language: text diff --git a/products/diffpycmi/LICENSE.txt b/products/diffpycmi/LICENSE.txt deleted file mode 100644 index f761aa49..00000000 --- a/products/diffpycmi/LICENSE.txt +++ /dev/null @@ -1,137 +0,0 @@ -OPEN SOURCE LICENSE AGREEMENT -============================= - -Copyright (c) 2009-2011, University of Tennessee -Copyright (c) 1989, 1991 Free Software Foundation, Inc. -Copyright (c) 2006, The Regents of the University of California through - Lawrence Berkeley National Laboratory -Copyright (c) 2014, Australian Synchrotron Research Program Inc., ("ASRP") -Copyright (c) 2006-2007, Board of Trustees of Michigan State University -Copyright (c) 2008-2012, The Trustees of Columbia University in the City - of New York - -Copyright (c) 2014-2019, Brookhaven Science Associates, Brookhaven National - Laboratory - - -The "diffpy.cmi" is distributed subject to the following license conditions: - - -SOFTWARE LICENSE AGREEMENT - - Software: diffpy.cmi - - -(1) The "Software", below, refers to the aforementioned diffpy.cmi (in either -source code, or binary form and accompanying documentation). - -Part of the software was derived from the DANSE, ObjCryst++ (with permission), -PyCifRW, Python periodictable, CCTBX, and SasView open source projects, of -which the original Copyrights are contained in each individual file. - -Each licensee is addressed as "you" or "Licensee." - - -(2) The copyright holders shown above and their third-party Licensors hereby -grant licensee a royalty-free nonexclusive license, subject to the limitations -stated herein and U.S. Government license rights. - - -(3) You may modify and make a copy or copies of the software for use within -your organization, if you meet the following conditions: - - (a) Copies in source code must include the copyright notice and this - software license agreement. - - (b) Copies in binary form must include the copyright notice and this - Software License Agreement in the documentation and/or other materials - provided with the copy. - - -(4) You may modify a copy or copies of the Software or any portion of it, thus -forming a work based on the Software, and distribute copies of such work -outside your organization, if you meet all of the following conditions: - - (a) Copies in source code must include the copyright notice and this - Software License Agreement; - - (b) Copies in binary form must include the copyright notice and this - Software License Agreement in the documentation and/or other materials - provided with the copy; - - (c) Modified copies and works based on the Software must carry prominent - notices stating that you changed specified portions of the Software. - - (d) Neither the name of Brookhaven Science Associates or Brookhaven - National Laboratory nor the names of its contributors may be used to - endorse or promote products derived from this software without specific - written permission. - - -(5) Portions of the Software resulted from work developed under a U.S. -Government contract and are subject to the following license: -The Government is granted for itself and others acting on its behalf a -paid-up, nonexclusive, irrevocable worldwide license in this computer software -to reproduce, prepare derivative works, and perform publicly and display -publicly. - - -(6) WARRANTY DISCLAIMER. THE SOFTWARE IS SUPPLIED "AS IS" WITHOUT -WARRANTY OF ANY KIND. THE COPYRIGHT HOLDERS, THEIR THIRD PARTY -LICENSORS, THE UNITED STATES, THE UNITED STATES DEPARTMENT OF ENERGY, AND -THEIR EMPLOYEES: (1) DISCLAIM ANY WARRANTIES, EXPRESS OR IMPLIED, INCLUDING -BUT NOT LIMITED TO ANY IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A -PARTICULAR PURPOSE, TITLE OR NON-INFRINGEMENT, (2) DO NOT ASSUME ANY LEGAL -LIABILITY OR RESPONSIBILITY FOR THE ACCURACY, COMPLETENESS, OR USEFULNESS OF -THE SOFTWARE, (3) DO NOT REPRESENT THAT USE OF THE SOFTWARE WOULD NOT INFRINGE -PRIVATELY OWNED RIGHTS, (4) DO NOT WARRANT THAT THE SOFTWARE WILL FUNCTION -UNINTERRUPTED, THAT IT IS ERROR-FREE OR THAT ANY ERRORS WILL BE CORRECTED. - - -(7) LIMITATION OF LIABILITY. IN NO EVENT WILL THE COPYRIGHT HOLDERS, THEIR -THIRD PARTY LICENSORS, THE UNITED STATES, THE UNITED STATES DEPARTMENT OF -ENERGY, OR THEIR EMPLOYEES: BE LIABLE FOR ANY INDIRECT, INCIDENTAL, -CONSEQUENTIAL, SPECIAL OR PUNITIVE DAMAGES OF ANY KIND OR NATURE, INCLUDING -BUT NOT LIMITED TO LOSS OF PROFITS OR LOSS OF DATA, FOR ANY REASON WHATSOEVER, -WHETHER SUCH LIABILITY IS ASSERTED ON THE BASIS OF CONTRACT, TORT (INCLUDING -NEGLIGENCE OR STRICT LIABILITY), OR OTHERWISE, EVEN IF ANY OF SAID PARTIES HAS -BEEN WARNED OF THE POSSIBILITY OF SUCH LOSS OR DAMAGES. - - -Brookhaven National Laboratory Notice -===================================== - -Acknowledgment of sponsorship ------------------------------ - -This software was produced by the Brookhaven National Laboratory, under -Contract DE-AC02-98CH10886 with the Department of Energy. - - -Government disclaimer of liability ----------------------------------- - -Neither the United States nor the United States Department of Energy, nor -any of their employees, makes any warranty, express or implied, or assumes -any legal liability or responsibility for the accuracy, completeness, or -usefulness of any data, apparatus, product, or process disclosed, or -represents that its use would not infringe privately owned rights. - - -Brookhaven disclaimer of liability ----------------------------------- - -Brookhaven National Laboratory makes no representations or warranties, -express or implied, nor assumes any liability for the use of this software. - - -Maintenance of notice ---------------------- - -In the interest of clarity regarding the origin and status of this -software, Brookhaven National Laboratory requests that any recipient of it -maintain this notice affixed to any distribution by the recipient that -contains a copy or derivative of this software. - - -END OF LICENSE diff --git a/products/diffpycmi/index.rst b/products/diffpycmi/index.rst deleted file mode 100644 index 70f49f50..00000000 --- a/products/diffpycmi/index.rst +++ /dev/null @@ -1,85 +0,0 @@ -########## -|diffpycmi| -########## - -Diffpy.cmi is designed as an extensible complex modeling infrastructure. -Users and developers can readily integrate novel data types and constraints -into custom workflows. While widely used for advanced analysis of structural -data, the framework is general and can be applied to any problem where model -parameters are refined to fit calculated quantities to data. - -Diffpy.cmi is a community-driven project that supports Unix, Linux, macOS, -and Windows platforms. It is designed to be used in Python scripts enabling -flexible scripting and automation for advanced and reproducible workflows. -Users are encouraged to leverage the software for their modeling needs and -to contribute feedback, use cases, and extensions through the project -community. - - -.. figure:: ../../images/diffpycmi_screenshot.png - :align: center - - - -Installation -============ -For the most up-to-date installation instructions, please refer to the installation section of the -`diffpy.cmi README page on GitHub `_. - -Pack and Profile Installation -============================= - -Diffpy.cmi is designed to be modular and extensible through the use of optional -dependencies known as `packs`. Additionally, users can define custom workflows -that combine multiple packs with optional post-installation steps, known as `profiles`. - -For more information on packs and profiles please refer to the -`diffpy.cmi overview page `_. - -For information how to install packs and profiles, please refer to the -`diffpy.cmi command-line interface page `_. - - -Tutorials -========= - -Many examples exist for diffpy.cmi. Using the command-line interface (CLI), these -examples can be copied directly to your computer. -For information on how to use the command-line interface to access the examples, -please refer to the -`diffpy.cmi CLI documentation `_. -Additionally, here are some direct links to other tutorials and examples, - -* A step-by-step tutorial on using diffpy.cmi to `fit a nickel PDF `_. - -* Examples and experimental data from the book *Atomic Pair Distribution Function Analysis: A Primer* are freely available at our - `GitHub repository `_. - -* Worked examples from ADD2019 school and conference -- - https://github.com/diffpy/add2019-diffpy-cmi. - -Documentation -============= - -Documentation for diffpy.cmi is available at https://www.diffpy.org/diffpy.cmi. - - -Reference -========= - -If you use this software in a research work which leads to publication, -we ask you to acknowledge the use of diffpy.cmi by citing the following -paper: - -* |citeJuhasAca15| - -.. URL definitions below ----------------------------------------------- - -.. |doc-diffpy.srfit| replace:: diffpy.srfit -.. |doc-diffpy.srreal| replace:: diffpy.srreal -.. |doc-diffpy.structure| replace:: diffpy.structure -.. |doc-diffpy.utils| replace:: diffpy.utils -.. |doc-pyobjcryst| replace:: pyobjcryst -.. |doc-libdiffpy| replace:: libdiffpy - -.. include:: ../../abbreviations.txt diff --git a/products/diffpycmi/license.rst b/products/diffpycmi/license.rst deleted file mode 100644 index 18fed07e..00000000 --- a/products/diffpycmi/license.rst +++ /dev/null @@ -1,6 +0,0 @@ -.. this page only contains the LICENSE text for |diffpycmi| - -.. title:: |diffpycmi| License - -.. literalinclude:: LICENSE.txt - :language: text diff --git a/products/diffpycmi/updatesources.rst b/products/diffpycmi/updatesources.rst deleted file mode 100644 index 635a4a19..00000000 --- a/products/diffpycmi/updatesources.rst +++ /dev/null @@ -1,51 +0,0 @@ -How to Update to the Latest Sources -=================================== - -In order to update and build the source code you must have all the -dependencies installed. In addition to the dependencies listed in the -:doc:`installation instructions `, you will need ``mercurial`` -and ``wget``. On Ubuntu and Fedora, the required software can easily be -installed using the system package manager using the commands shown -below. - - For Ubuntu use ``apt-get``:: - - sudo apt-get install \ - libgsl0-dev libboost-all-dev python-dev \ - python-setuptools python-numpy python-scipy \ - python-matplotlib python-lxml ipython \ - scons git zsh mercurial wget - - For Fedora use ``yum``:: - - sudo yum install \ - gsl-devel boost-devel python-devel - python-setuptools numpy scipy \ - python-matplotlib python-lxml \ - python-ipython-notebook scons git zsh \ - mercurial wget - -The easiest way to update and recompile the latest sources is to use the -installation script that was packaged with the release bundle. - -To update the codes:: - - ./install --update[=steps] - -This will perform all or selected software updates from online source repositories. -Update steps are comma separated integers or ranges such as '1,3,5-6'. - -To rebuild the source code:: - - ./install --build[=steps] - -This will rebuild all or specified packages from sources in the src folder. In both -cases, you could use option -n to display the build steps. - -.. note:: - - If your installed version of Python came from a Python distribution - other than system Python (e.g. the Enthought Python Distribution) it - may be incompatible with the system boost library and the build may - fail. To resolve the problem, you should rebuild the boost library - against Enthought Python and then rebuild all diffpy.cmi modules. diff --git a/products/labpdfproc.rst b/products/labpdfproc.rst deleted file mode 100644 index 93735733..00000000 --- a/products/labpdfproc.rst +++ /dev/null @@ -1,47 +0,0 @@ -###################### -diffpy.labpdfproc -###################### - - -Tools for processing x-ray powder diffraction data from laboratory -sources. - -PDFgetX3 has revolutionized how pair distribution function (PDF) methods -can be applied to solve -nanostructure problems. However, the program was designed for use with -Rapid Acquisition PDF (RAPDF) data from synchrotron sources. A key -approximation inherent in the use of PDFgetX3 for RAPDF data is that -absorption effects are negligible. This is typically not the case for -laboratory x-ray diffractometers, where absorption effects can be -significant. - -This app is designed to preprocess data from laboratory x-ray -diffractometers before using PDFgetX3 to obtain PDFs. The app currently -carries out an absorption correction assuming a parallel beam capillary -geometry which is the most common geometry for lab PDF measurements. - -.. figure:: ../images/labpdfproc.png - :align: center - -Installation -============ - -For the most up-to-date installation instructions, please refer to the installation section of the -`diffpy.labpdfproc README page on GitHub `_. - -Running labpdfproc -====================== - -To run diffpy.labpdfproc after installation, type the command:: - - labpdfproc - -Tutorials -========= -Tutorials on how to use diffpy.labpdfproc can be found -at the `diffpy.labpdfproc documentation `_. - -Documentation -============= - -Documentation for diffpy.labpdfproc is available at https://www.diffpy.org/diffpy.labpdfproc. \ No newline at end of file diff --git a/products/mPDF.rst b/products/mPDF.rst deleted file mode 100644 index 1200206a..00000000 --- a/products/mPDF.rst +++ /dev/null @@ -1,51 +0,0 @@ -############# -diffpy.mpdf -############# - -.. include:: ../abbreviations.txt - -The diffpy.mpdf package provides a convenient method for computing the magnetic PDF -(mPDF) from magnetic structures and performing fits to neutron total scattering -data. The mPDF is calculated by an MPDFcalculator object, which extracts the spin -positions and spin vectors from a MagStructure object that the MPDFcalculator -takes as input. The MagStructure object in turn can contain multiple MagSpecies -objects, which generate magnetic configurations based on a diffpy.structure object -and a set of propagation vectors and basis vectors provided by the user. -Alternatively, the user can manually define a magnetic unit cell that will be used -to generate the magnetic structure, or the magnetic structure can be defined simply -as lists of spin positions and spin vectors provided by the user. - - - -.. figure:: ../images/mpdf_screenshot.png - :align: center - - Example usage of diffpy.mpdf - - -Reference -========= - -If you use diffpy.mpdf in scientific research, please acknowledge it by citing: - - Frandsen et al., "diffpy.mpdf: open-source software for magnetic pair distribution function analysis", - J. Appl. Cryst. (2022) 55, 1377-1382. https://doi.org/10.1107/S1600576722007257 - -Installation -============ - -For the most up-to-date installation instructions, please refer to the -`diffpy.mpdf README on GitHub `_. - -Tutorials -========= - -For tutorials on how to use diffpy.mpdf, please visit: https://github.com/FrandsenGroup/mPDF-tutorial. - -Documentation -============= - -Full documentation for diffpy.mpdf is available at: -`https://frandsengroup.github.io/diffpy.mpdf/index.html `_ - - diff --git a/products/mPDFlicense.rst b/products/mPDFlicense.rst deleted file mode 100644 index 22798bbd..00000000 --- a/products/mPDFlicense.rst +++ /dev/null @@ -1,6 +0,0 @@ -.. this page only contains the LICENSE text for mPDF - -.. title:: mPDF License - -.. literalinclude:: diffpycmi/LICENSE.txt - :language: text diff --git a/products/morph.rst b/products/morph.rst deleted file mode 100644 index 3af42237..00000000 --- a/products/morph.rst +++ /dev/null @@ -1,57 +0,0 @@ -############ -diffpy.morph -############ - -Diffpy.morph is a Python software package designed to allow researchers -the ability to compare experimental datasets to identify structural changes. - -Diffpy.morph makes use of several data manipulation techniques to correct -for benign effects such as thermal expansion (peak shift) and increased -thermal motion (peak broadening) or a change in scale due to differences -in incident flux, for example. diffpy.morph will do its best to correct -for these benign effects before computing and plotting a difference -curve. - -One dataset is designated as the "target", while the second is morphed. -Such morphs include stretching (modifying the x-axis to simulate uniform expansion), -smearing (broadening peaks via uniform convolution), and scaling. In addition -to these operations, diffpy.morph offers other morphing transformations, though -stretching, smearing, and scaling are the most commonly used. The software -automatically varies the amplitudes of the selected transformations to obtain -the best fit between the morphed and target datasets, and then plots both -datasets along with the resulting difference curve shown below. - -Note that diffpy.morph works on other spectra, not just pair distribution functions (PDFs). - -.. diffpy.morph will soon be included in :doc:`xPDFsuite `, a powerful end-to-end software for X-ray PDF analysis. xPDFsuite is designed for flexible, high throughput PDF analyses and contains many features for interrogating, comparing, and modeling data as well as simply doing data reduction. - -.. figure:: ../images/morph.png - :align: center - - diffpy.morph transformation techniques applied to PDFs of IrTe\ :sub:`2` doped with - different atomic species at different temperatures. - The left column (a, b, and c) shows the unmorphed PDFs at 10K (blue) and 300K (red) and - their corresponding difference curves. The right column (d, e, and f) shows the same PDFs - after applying the stretch, smear, and scale transformations to the 10K PDFs. No phase transition - is observed for PDFs in d and e as the difference curves are flat (low R\ :sub:`w`). - However, a large difference curve (high R\ :sub:`w`) is observed in - f, signifying a structural phase transition between 10K and 300K. - - -Installation -============ - -For the most up-to-date installation instructions, please refer to the installation section of the -`diffpy.morph README page on GitHub `_. - -Tutorials -========= - -Tutorials on how to use diffpy.morph can be found -at the `diffpy.morph documentation `_. - - -Documentation -============= - -Documentation for diffpy.morph is available at https://www.diffpy.org/diffpy.morph. diff --git a/products/pdfgetx.rst b/products/pdfgetx.rst deleted file mode 100644 index a831bfb4..00000000 --- a/products/pdfgetx.rst +++ /dev/null @@ -1,220 +0,0 @@ -############################### -PDFgetX3, PDFgetN3 and PDFgetS3 -############################### - -.. include:: ../abbreviations.txt - -PDFgetX3, PDFgetN3 and PDFgetS3 are command-line utilities -for automated batch processing of 1D powder diffraction data to obtain -PDFs. For an affordable GUI that allows for high throughput conversion of -multiple files with interactive graphics, please consider purchasing -:doc:`xPDFsuite `. -A version of PDFgetX3 that processes electron diffraction data is available -by contacting NanoMegas (see `here `_ for more details) - -PDFgetX3, PDFgetN3 and PDFgetS3 are easy to use, fast and convenient for automated batch processing. The interactive mode provides complete access to all -parameters and intermediate results, as well as live-plotting feature -that helps to tune conversion parameters and visualize their effect on the results. -PDFgetX3, PDFgetN3 and PDFgetS3 are distributed together with -Python library diffpy.pdfgetx, which provides the -underlying PDF-processing functions and can be -utilized in custom PDF-conversion scripts. - -User PDFgetX3 for converting x-ray data, PDFgetN3 for neutron data (designed -for reactor data explicitly and not tested on neutron time-of-flight data), and -PDFgetS3 for converting correlation functions from nanoparticle assemblies in -small angle scattering data into superlattice assembly structures. - -*The software is free for open academic research, -but requires paid license for commercial use.* - - -Download -======== - -.. should be easier to use redirected URLs instead of - http://innovation.columbia.edu/technologies/m11-120 - -.. |m11-120| raw:: html - - - https://columbia.resoluteinnovation.com/technologies/M11-120 - -The PDFgetX3, PDFgetN3 and PDFgetS3 software can be obtained for free from -`Columbia Technology Ventures `__, -provided it will be used for open academic research -(please cite the relevant paper below). -If you plan to use the software in any other way, please contact -``_ at Columbia Technology Ventures. - -Use the following steps to obtain the academic license and download -the software: - -1. Open new browser window at the licensing page |m11-120|. - -2. Select "Request License" - -3. Click on the link for the free or paid license that is appropriate - for your needs and situation - -4. Follow the link to sign in (or sign up if you don't already have a login) - -5. Follow the prompts to submit the license request and wait for license confirmation email. - Make a note of the URL so you can easily navigate back to this page. - -6. Once the license is approved, the download link on the product page will become live and - you can download the software to your local computer. - -7. The download will be a zip file that contains versions of the software for all - available Python versions and platforms. Extract the files from the zip file, open - ``INSTRUCTIONS.txt`` in a text editor and follow the instructions for installation. - - -Documentation -============= - -Version 2.4.0 - Latest ----------------------- - -* `installation instructions <../doc/pdfgetx/2.4.0/install.html>`__ -* `user manual <../doc/pdfgetx/2.4.0/index.html>`__ -* `tutorial files <../doc/pdfgetx/2.4.0/pdfgetxn3-examples.zip>`__ - -**Added:** - -* New ``transformterminationfunctions`` infrastructure to allow non-trivial termination functions -* Added ``Lorch`` termination function option -* Description of terminationfunctions to docs - -**Fixed:** - -* Build docs using the correct scikit-package script name -* Reapply the Sphinx dependency `m2r` to `m2r2` fix that seems to have inadvertently been lost - -Previous Versions -================= -Please reach out to ``_ if you need one of these versions - -Version 2.3.0 -------------- - -**Added:** - -* Support for Python 3.11, 3.12, 3.13. -* Added Cython build support. -* Added `.gitattribute` for github release export. -* Use bg-mpl-stylesheets as a style for matplotlib plots. -* test for the Q-array issue -* Added instructions in wheels bundle. -* Added `pdfgetx3 --list-examples` and `pdfgetx3 --example` commands to list available examples and copy example dir into pwd. - -**Changed:** - -* Changed build process. Now build `*.c` sdist and c binary wheels for each platform and python version. -* Updated :code:`tuneconfig.py` to use the latest api from matplotlib. -* Renamed get_atol() to get_atol_from_rtol() in test_pdfgetter.py -* Standardized checking if a variable is an iterable. -* Removed `docs/source` directory and makefiles in installation. -* Changed `twothetazerofit.ipy` to output `.png` files instead of `.pdf`and `.svgz` files. - -**Fixed:** - -* Refactored code for prefer_nodisplay_backend and suppress warnings. -* Support scikit-package Level 5 standard (https://scikit-package.github.io/scikit-package/). -* Replaced :code:`setup.py` with :code:`pyproject.toml` for releases. -* Fixed example import errors `diffpy.structure` because of `Structure` deprecation. -* Fixed tutorial missing image file. - -**Removed:** - -* Removed deprecated support for `loadData`, `pdfgetxApplication.processFiles`, `pdfgetxApplication.clearSession`, `pdfgetxApplication.loadData`. -* Removed unused `.coveragerc`, `.gitarchive.cfg`, `.gitattributes`. -* Support for Python 2.7, and Python <= 3.10 -* :code:`six`, and other Py2 legacy code\ -* Removed pre-commit run in merge-to-main workflow - -Version 2.2.1 - latest ----------------------- - -* `installation instructions <../doc/pdfgetx/2.2.1/install.html>`__ -* `user manual <../doc/pdfgetx/2.2.1/index.html>`__, - `printable manual <../doc/pdfgetx/2.2.1/PDFgetXNS3_manual.pdf>`__ -* `tutorial files <../doc/pdfgetx/2.2.1/pdfgetxn3-examples.zip>`__ -* `release notes <../doc/pdfgetx/2.2.1/release.html>`__ - -Version 2.2.0 ----------------------- - -* `installation instructions <../doc/pdfgetx/2.2.0/install.html>`__ -* `user manual <../doc/pdfgetx/2.2.0/index.html>`__, - `printable manual <../doc/pdfgetx/2.2.0/PDFgetXNS3_manual.pdf>`__ -* `tutorial files <../doc/pdfgetx/2.2.0/pdfgetxn3-examples.zip>`__ -* `release notes <../doc/pdfgetx/2.2.0/release.html>`__ - -Version 2.1.2 ----------------------- - -* `installation instructions <../doc/pdfgetx/2.1.2/install.html>`__ -* `user manual <../doc/pdfgetx/2.1.2/index.html>`__, - `printable manual <../doc/pdfgetx/2.1.2/PDFgetXNS3_manual.pdf>`__ -* `tutorial files <../doc/pdfgetx/2.1.2/pdfgetxn3-examples.zip>`__ -* `release notes <../doc/pdfgetx/2.1.2/release.html>`__ - - -Version 2.1.1 ----------------------- - -* `installation instructions <../doc/pdfgetx/2.1.1/install.html>`__ -* `user manual <../doc/pdfgetx/2.1.1/index.html>`__, - `printable manual <../doc/pdfgetx/2.1.1/PDFgetXNS3_manual.pdf>`__ -* `tutorial files <../doc/pdfgetx/2.1.1/pdfgetxn3-examples.zip>`__ -* `release notes <../doc/pdfgetx/2.1.1/release.html>`__ - - -Version 2.1.0 ----------------------- - -* `installation instructions <../doc/pdfgetx/2.1.0/install.html>`__ -* `user manual <../doc/pdfgetx/2.1.0/index.html>`__, - `printable manual <../doc/pdfgetx/2.1.0/PDFgetXNS3_manual.pdf>`__ -* `tutorial files <../doc/pdfgetx/2.1.0/pdfgetxn3-examples.zip>`__ -* `release notes <../doc/pdfgetx/2.1.0/release.html>`__ - - -Version 2.0.0 -------------- - -* `installation instructions <../doc/pdfgetx/2.0.0/install.html>`__ -* `user manual <../doc/pdfgetx/2.0.0/index.html>`__, - `printable manual <../doc/pdfgetx/2.0.0/PDFgetXN3_manual.pdf>`__ -* `tutorial files <../doc/pdfgetx/2.0.0/pdfgetxn3-examples.zip>`__ -* `release notes <../doc/pdfgetx/2.0.0/release.html>`__ - - -Version 1.2 ------------ - -* `user manual <../doc/pdfgetx/1.2/index.html>`__, - `printable manual <../doc/pdfgetx/1.2/PDFgetX3_manual.pdf>`__ -* `tutorial files <../doc/pdfgetx/1.2/pdfgetx3-examples.zip>`__ -* `release notes <../doc/pdfgetx/1.2/release.html>`__ - - -References -========== - -If you use this software for a scientific research that leads -to publication, we ask that you acknowledge the use of the software -by citing the following paper in your publication: - -* |citeJuhasJac13| - -For publications that use this software to process neutron -diffraction data we ask you to also cite: - -* |citeJuhasJac18| - -For publication that use this software to process small-angle -scattering data we ask you to also cite: - -* |citeLiuJac20| \ No newline at end of file diff --git a/products/pdfgui.rst b/products/pdfgui.rst deleted file mode 100644 index 6e30684a..00000000 --- a/products/pdfgui.rst +++ /dev/null @@ -1,107 +0,0 @@ -.. highlight:: bash -.. include:: ../abbreviations.txt - -############# -diffpy.pdfgui -############# - - -For users who do not have the expertise or necessity for command line analysis, diffpy.pdfgui is -a convenient and easy to use graphical front end for the PDFfit2 refinement program. It is -capable of full-profile fitting of the atomic pair distribution function (PDF) -derived from x-ray or neutron diffraction data -and comes with built in graphical and structure visualization capabilities. - -.. figure:: ../images/PDFgui_screenshot_small.png - :align: center - - Screen-shot of diffpy.pdfgui during a refinement of multiple data-sets - - -Reference -========= - -If you use this program for a scientific research that leads to publication, -we ask that you acknowledge use of the program by citing the following paper -in your publication: - - C L Farrow, P Juhas, J W Liu, D Bryndin, E S Božin, - J Bloch, Th Proffen and S J L Billinge, `PDFfit2 and PDFgui: - computer programs for studying nanostructure in crystals `_, - J. Phys.: Condens. Matter 19 (2007) 335219. - - -Installation -============ -For the most up-to-date installation instructions, please refer to the installation section of the -`diffpy.pdfgui README page on GitHub `_. - -Running pdfgui -=============== - -To run diffpy.pdfgui after installation, type the command:: - - pdfgui - -Tutorials -========= - -Search "PDFgui" on YouTube for some video tutorials on how to use diffpy.pdfgui. - -For in-depth help in using diffpy.pdfgui to solve scientific problems please -see the book "Atomic Pair Distribution Function Analysis: A primer" by -Simon Billinge, Kirsten Jensen, and past and present Billinge group members, -published by Oxford University Press. Data for the worked examples can -be found here: https://github.com/Billingegroup/pdfttp_data. - -Please, join the :doc:`community forum <../community>` for tips, tricks, and feedback. - -Documentation -============= - -Documentation for diffpy.pdfgui is available at https://www.diffpy.org/diffpy.pdfgui. - -Legacy versions -=============== - -v1.1.2 is the last python 2 version of PDFgui. It is no longer supported, -but may be needed to open python 2 generated `.ddp` project files. It can -be installed in a python2 anaconda environment using the commands:: - - conda config --set restore_free_channel true - conda config --add channels diffpy - conda create --name=py27 python=2.7 - conda activate py27 - conda install -c diffpy "diffpy.pdfgui==1.1.2" - -When Anaconda Python is not available, PDFgui can be installed from -sources. The latest source package is at the `Python Package -Index `__ and the -prior versions are at -https://github.com/diffpy/diffpy.pdfgui/releases. See the `README -`__ document -for further details on installation from sources, - -Finally, here are the previous single-file installers. Although -quite outdated, they might be handy if there is some problem with -Anaconda or if one needs to install without Internet connection. - -======================== ================== ============ ===================================== -Name Date Size Description -======================== ================== ============ ===================================== -`diffpy-1.0-r3067.exe`_ 2009-04-10 21.5 M Windows self extracting installer -`diffpy-1.0-r3067.tgz`_ 2009-04-10 6.4 M Linux and Mac tarball -======================== ================== ============ ===================================== - -.. _diffpy-1.0-r3067.exe: - https://github.com/diffpy/diffpy.pdfgui/releases/download/svn3067/diffpy-1.0-r3067.exe -.. _diffpy-1.0-r3067.tgz: - https://github.com/diffpy/diffpy.pdfgui/releases/download/svn3067/diffpy-1.0-r3067.tgz - -MD5 check sums for these installer files are available -`here `__. - -.. toctree:: - :hidden: - - pdfguilicense diff --git a/products/pdfguilicense.rst b/products/pdfguilicense.rst deleted file mode 100644 index a2fae790..00000000 --- a/products/pdfguilicense.rst +++ /dev/null @@ -1,6 +0,0 @@ -.. this page only contains the LICENSE text for PDFgui - -.. title:: PDFgui License - -.. literalinclude:: PDFgui_LICENSE.txt - :language: text diff --git a/products/pythonpackages.rst b/products/pythonpackages.rst deleted file mode 100644 index 4ae79236..00000000 --- a/products/pythonpackages.rst +++ /dev/null @@ -1,32 +0,0 @@ -Python Packages -=============== - -This is a complete list of all Python packages developed by the DiffPy -team. For more information about a specific package, follow the link to -the corresponding documentation page. - -.. list-table:: - :widths: 2 8 - :header-rows: 1 - :class: wrap-text - - * - Module - - Description - * - `diffpy.srfit `_ - - Setup and control of general fitting problems. - * - `diffpy.srmise `_ - - Python tool for peak extraction and peak fitting of atomic pair distribution functions. - * - `diffpy.srreal `_ - - Python library for calculation of pair-based quantities such as the pair distribution function (PDF), bond lengths, and bond valence sums. - * - `diffpy.structure `_ - - Handles storage of crystal structure data. - * - `diffpy.utils `_ - - General purpose shared utilities for the diffpy libraries. - * - `pyobjcryst `_ - - Python bindings to the ObjCryst++ Object-Oriented Crystallographic Library. - * - `diffpy.pdffit2 `_ - - Atomic structure refinement and PDF fitting (this is the computational engine used by PDFgui). - * - `diffpy.mpdf `_ - - Tools for calculating and refining magnetic PDFs. - -.. include:: ../abbreviations.txt diff --git a/products/utils.rst b/products/utils.rst deleted file mode 100644 index 069bb83f..00000000 --- a/products/utils.rst +++ /dev/null @@ -1,121 +0,0 @@ -############ -diffpy.utils -############ - -.. include:: ../abbreviations.txt - -General utilities for analyzing diffraction data - -The diffpy.utils package provides a number of functions and classes designed to help -researchers analyze their diffraction data. It also includes some functionality for -carrying out PDF analysis. Examples are parsers for reading common format diffraction -data files, ``DiffractionObjects`` that allow you to do algebra on diffraction patterns, -tools for better capture and propagation of metadata, -diffraction-friendly interpolation routines, as well as some other tools used across -diffpy libraries. - -Citation --------- - -If you use this program for a scientific research that leads -to publication, we ask that you acknowledge use of the program -by citing the following paper in your publication: - - P. Juhás, C. L. Farrow, X. Yang, K. R. Knox and S. J. L. Billinge, - `Complex modeling: a strategy and software program for combining - multiple information sources to solve ill posed structure and - nanostructure inverse problems - `__, - *Acta Crystallogr. A* **71**, 562-568 (2015). - -Documentation -------------- - -Documentation may be found at, https://diffpy.github.io/diffpy.utils - -Installation ------------- - -The preferred method is to use `Miniconda Python -`_ -and install from the "conda-forge" channel of Conda packages. - -To add "conda-forge" to the conda channels, run the following in a terminal. :: - - conda config --add channels conda-forge - -We want to install our packages in a suitable conda environment. -The following creates and activates a new environment named ``diffpy.utils_env`` :: - - conda create -n diffpy.utils_env diffpy.utils - conda activate diffpy.utils_env - -To confirm that the installation was successful, type :: - - python -c "import diffpy.utils; print(diffpy.utils.__version__)" - -The output should print the latest version displayed on the badges above. - -If the above does not work, you can use ``pip`` to download and install the latest release from -`Python Package Index `_. -To install using ``pip`` into your ``diffpy.utils_env`` environment, type :: - - pip install diffpy.utils - -If you prefer to install from sources, after installing the dependencies, obtain the source archive from -`GitHub `_. Once installed, ``cd`` into your ``diffpy.utils`` directory -and run the following :: - - pip install . - -Getting Started ---------------- - -You may consult our `online documentation `_ for tutorials and API references. - -Support and Contribute ----------------------- - -`Diffpy user group `_ is the discussion forum for general questions and discussions about the use of diffpy.utils. Please join the diffpy.utils users community by joining the Google group. The diffpy.utils project welcomes your expertise and enthusiasm! - -If you see a bug or want to request a feature, please `report it as an issue `_ and/or `submit a fix as a PR `_. You can also post it to the `Diffpy user group `_. - -Feel free to fork the project and contribute. To install diffpy.utils -in a development mode, with its sources being directly used by Python -rather than copied to a package directory, use the following in the root -directory :: - - pip install -e . - -To ensure code quality and to prevent accidental commits into the default branch, please set up the use of our pre-commit -hooks. - -1. Install pre-commit in your working environment by running ``conda install pre-commit``. - -2. Initialize pre-commit (one time only) ``pre-commit install``. - -Thereafter your code will be linted by black and isort and checked against flake8 before you can commit. -If it fails by black or isort, just rerun and it should pass (black and isort will modify the files so should -pass after they are modified). If the flake8 test fails please see the error messages and fix them manually before -trying to commit again. - -Improvements and fixes are always appreciated. - -Before contributing, please read our `Code of Conduct `_. - -Contact -------- - -For more information on diffpy.utils please visit the project `web-page `_ or email Simon Billinge at sb2896@columbia.edu. - - -What next? -============ - -Explore the diffpy.utils -`tutorials `_! - -.. toctree:: - :hidden: - - Utilslicense diff --git a/products/xPDFsuite.rst b/products/xPDFsuite.rst deleted file mode 100644 index 745dc90b..00000000 --- a/products/xPDFsuite.rst +++ /dev/null @@ -1,58 +0,0 @@ -########## -xPDFsuite -########## - -An easy to use end-to-end software solution for atomic pair distribution function analysis with x-rays. - -.. include:: ../abbreviations.txt -.. figure:: ../images/xPDFsuite.png - :align: center - -Overview -======== - -This suite of algorithms and software, named xPDFsuite, is an easy to use graphical user interface (GUI) to a number of Diffpy programs. -It provides a raw-data-to-modelled-PDF solution for X-ray PDFs. It is specially convenient for handling high throughput data with many -(hundreds to thousands) of datatsets, such as come from modern synchrotron experiments with 2D detectors. It is equally useful for data -from laboratory x-rays. The software runs on laptops and workstations running windows, mac OSX and linux. - -Within the same GUI you can: - * visualize the 2D raw data from large numbers of files - * integrate 2D data to 1D diffraction patterns - * plot and manipulate plots of large numbers of patterns - * rapidly and easily process the 1D data to obtain S(Q), F(Q) and G(r) (PDF) functions using the power of the PDFgetX3 engine - * use the powerful interactive plotting capabilities to explore these reduced data functions - * use built in tools for comparing datasets using Pearson correlations etc. - * the widely used PDFgui PDF fitting program is also included in xPDFsuite and is straightforwardly incorporated into your workflow - -Features -======== - -xPDFsuite is exceptionally easy to learn and use and lowers the barrier to using atomic pair distribution function (PDF) methods, -increasing the range of people who can use it, decreasing training costs, and speeding up workflow. xPDFsuite permits users to run -multiple data sets using the same input file, allowing for batch processing of large numbers of datasets in fractions of a second. - -Key features: - * Full featured, easy-to-use GUI - * Real time PDF transformation and plotting - * Flexible plotting and analysis for single and mulitple data sets - * Optimized for high throughput data processing - * 2D powder diffraction image integration - * Static and dynamic mask editing on 2D image - * Pearson correlation analysis on selected data-sets - * Written in Python and on Windows, Linux, and MacOSX - -Explore xPDFsuite -================= -xPDFsuite is available for purchase for either academic or commercial applications. - * To help you explore xPDFsuite on your own data we have made a free evaluation version of the software available at |CTV_link|_. This has all the xPDFsuite functionality, but you will not be able to save your results. - * To purchase xPDFsuite (separate academic and commercial license options), please go to |CTV_link|_. - -.. |CTV_link| replace:: Columbia Technology Ventures -.. _CTV_link: ctv-xpdfsuite_ - -**Thank you for purchasing xPDFsuite. Funds we raise from sales help us to develop user interfaces and useful features on top of our -free for academics and open source Diffpy products, such as diffpy.cmi, diffpy.pdfgui, and PDFgetX3.** - -**We hope you enjoy xPDFsuite and that it supercharges your PDF analyses.** Please contact us with feedback and questions by -emailing `Prof. Simon Billinge `_ diff --git a/products/xinterpdf.rst b/products/xinterpdf.rst deleted file mode 100644 index fc67dea7..00000000 --- a/products/xinterpdf.rst +++ /dev/null @@ -1,99 +0,0 @@ -######### -xINTERPDF -######### - -xINTERPDF is a Python GUI program for analyzing X-ray pair distribution -function (PDF) data of organic compounds collected at synchrotron and/or -laboratory X-ray sources. It uses |diffpycmi| as a backend for simulation -of PDFs. - -Currently it supports: - -* The study of intermolecular interaction (e.g. hydrogen bonds) by - subtracting out the scattering signal(s) of single molecule(s) in real - space. -* The PDF model fit of the crystalline organic compound using the method - proposed by Prill *et al*. (`J. Appl. Crystallogr., 48, 171-178, 2015 - `__). -* The phase quantification of physical mixtures of organics. -* Generate Score/Scree plots based on Principle Component Analysis (PCA). - -A video demo about installation and usage is available at -https://www.youtube.com/watch?v=lAFZ5VYEH1g. The code for xINTERPDF -is hosted on `GitHub `__. - -.. figure:: ../images/xinterpdf.png - :align: center - -This is a first release of the program (v.0.1.0). Comments and -suggestions are welcome. Please send an email to Chenyang Shi at -cs3000@columbia.edu or post your questions to `diffpy-users`_ -Google Group. - -Getting Started -=============== - -The xINTERPDF package requires Python 2.7 and the following dependency packages: - -* ``NumPy`` - Numerical mathematics and fast array operations for Python -* ``SciPy`` - Scientific libraries for Python -* ``matplotlib`` - Python plotting library -* ``Scikit-Learn`` - Python machine learning library; its PCA module is called. -* ``diffpy.cmi`` - Versatile Python packages for simulation of atomic pair distribution functions -* ``Tkinter`` - Python default library for creation of graphical user interface - -See the :doc:`xINTERPDF license ` for terms and conditions of use. - -Installation ------------- - -xINTERPDF can be installed on Linux and Mac OS machines. The recommended -way to install this package is through conda. Please visit -|anaconda-download|, and select Python 2.7 version -to download and install. Once conda is installed, you can follow the -steps below to install xINTERPDF. - -*Step 1: Add the diffpy conda channel to your conda configuration.* :: - - conda config --add channels diffpy - -*Step 2: Create a virtural environment and install the program there.* :: - - conda create –c curieshicy –n xinterpdf xinterpdf - -This command first adds a *curieshicy* channel, then creates a virtual -environment *xinterpdf*, before finally install the *xinterpdf* program. -Note that you can name the environment anything you choose by passing it -a different name after the *-n* flag in the command. - -*Step 3: Activate the virtual environment and start the program.* :: - - source activate xinterpdf - xinterpdf - -The first command starts the virtual environment and the second invokes -the main GUI window of the xINTERPDF program. - -User Guide ----------- - -Please see `user manual <../doc/xinterpdf/xINTERPDF_User_Guide_20180615.pdf>`__ -for more details. - -References ----------- - -If you use this software in a research work which leads to publication, -we ask you to acknowledge the use of xINTERPDF by citing the following -papers: - -* |citeShiJac18| -* |citeJuhasAca15| - - -.. include:: ../abbreviations.txt - -.. toctree:: - :hidden: - - xinterpdflicense diff --git a/products/xinterpdflicense.rst b/products/xinterpdflicense.rst deleted file mode 100644 index a87b07c5..00000000 --- a/products/xinterpdflicense.rst +++ /dev/null @@ -1,6 +0,0 @@ -.. this page only contains the LICENSE text for xINTERPDF - -.. title:: xINTERPDF License - -.. literalinclude:: xinterpdflicense.txt - :language: text diff --git a/products/xinterpdflicense.txt b/products/xinterpdflicense.txt deleted file mode 100644 index ac280b3d..00000000 --- a/products/xinterpdflicense.txt +++ /dev/null @@ -1,60 +0,0 @@ -If you use this program to do productive scientific research that -leads to publication, we ask that you acknowledge use of the -program by citing the following papers in your publication: - - * Chenyang Shi, "xINTERPDF: a graphical use interface for - analyzing intermolecular pair distribution functions of - organic compounds from X-ray total scattering data", - J. Appl. Crystallogr. 51, 1498-1499 (2018). - - * Pavol Juhás, Christopher L. Farrow, Xiaohao Yang, Kevin R. Knox, - and Simon J. L. Billinge, "Complex modeling: a strategy and software - program for combining multiple information sources to solve ill posed - structure and nanostructure inverse problems", - Acta Crystallogr. A, 71, 562-568, 2015. - -Copyright (c) 2009-2011, University of Tennessee -Copyright (c) 1989, 1991 Free Software Foundation, Inc. -Copyright (c) 2014, Australian Synchrotron Research Program Inc., ("ASRP") -Copyright (c) 2006-2007, Board of Trustees of Michigan State University -Copyright (c) 2008-2012, The Trustees of Columbia University in the City - of New York -Copyright (c) 2014-2016, Brookhaven Science Associates, Brookhaven National - Laboratory -Copyright (c) 2014-2018, AbbVie Inc. - -For more information please visit the diffpy web-page at - http://www.diffpy.org -or email Chenyang Shi at cs3000@columbia.edu, or Prof. Simon -Billinge at sb2896@columbia.edu. - -Redistribution and use in source and binary forms, with or without -modification, are permitted provided that the following conditions -are met: - - * Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - * Neither the name of the copyright holder nor the names of its - contributors may be used to endorse or promote products derived from - this software without specific prior written permission. - -THIS SOFTWARE IS PROVIDED BY COPYRIGHT HOLDER "AS IS". COPYRIGHT -HOLDER EXPRESSLY DISCLAIMS ANY AND ALL WARRANTIES AND CONDITIONS, -EITHER EXPRESS OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE -IMPLIED WARRANTIES OF MERCHANTABILITY, TITLE, FITNESS, ADEQUACY OR -SUITABILITY FOR A PARTICULAR PURPOSE, AND ANY WARRANTIES OF FREEDOM -FROM INFRINGEMENT OF ANY DOMESTIC OR FOREIGN PATENT, COPYRIGHTS, -TRADE SECRETS OR OTHER PROPRIETARY RIGHTS OF ANY PARTY. IN NO EVENT -SHALL COPYRIGHT HOLDER BE LIABLE TO ANY PARTY FOR ANY DIRECT, -INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES -(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR -SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) -HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, -STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) -ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE OR RELATING TO -THIS AGREEMENT, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. diff --git a/publications.rst b/publications.rst deleted file mode 100644 index 66895414..00000000 --- a/publications.rst +++ /dev/null @@ -1,39 +0,0 @@ -.. include:: abbreviations.txt - -References -========== - -The following publications describe DiffPy software packages. -Please cite the appropriate papers if you use these tools in your research. -For other DiffPy packages not listed here, please refer to the respective -`GitHub repository `_ for any relevant publications to cite. - -**diffpy.cmi** - -|citeJuhasAca15| - -**diffpy.pdfgui, diffpy.pdffit2** - -|citeFarrowJpcm07| - -**PDFgetX3, PDFgetN3** - -|citeJuhasJac13| - -|citeJuhasJac18| - -**diffpy.srmise** - -|citeGranlundAca15| - -**PDFfit** - -|citeProffenJac99| - -**sasPDF** - -|citeLiuJac20| - -**xINTERPDF** - -|citeShiJac18| diff --git a/pybin/download_index.py b/pybin/download_index.py new file mode 100644 index 00000000..c5133c01 --- /dev/null +++ b/pybin/download_index.py @@ -0,0 +1,96 @@ +import os +import re +import time + +# Constants + +_thisdir = os.path.dirname(os.path.abspath(__file__)) +_diffpydir = os.path.dirname(_thisdir) +_statsfile = os.path.join(_diffpydir, 'stats.txt') + + +def _getDownloadList(drel): + """Obtain data needed for creating download table for a directory. + + drel -- directory path relative to _diffpydir + + Return dictionary with items + ('mtime', 'name', 'dcount', 'fmtsize', 'size', 'fmtmtime') + """ + downloaddir = os.path.join(_diffpydir, drel) + ignore = re.compile(r'^[.]|stats.txt') + lst = [] + for f in os.listdir(downloaddir): + relpath = os.path.join(drel, f) + fullpath = os.path.join(downloaddir, f) + if not os.path.isfile(fullpath) or ignore.match(f): continue + lst.append({ + 'name' : f, + 'relpath' : relpath, + 'fullpath' : fullpath, + 'mtime' : os.path.getmtime(fullpath), + 'size' : os.path.getsize(fullpath), + }) + # reverse sort by mtime then by name + lsort = [(-d['mtime'], d['name'], d) for d in lst] + lsort.sort() + lst = [ tpl[-1] for tpl in lsort ] + # add the dcount field + dcount = {} + if os.path.isfile(_statsfile): + for line in open(_statsfile): + w = line.lstrip('/').split() + if len(w) != 2: continue + dcount[w[0]] = int(w[1]) + for d in lst: + d['dcount'] = dcount.get(d['relpath'], 0) + # add fmtsize and fmtmtime fields + from pathutils import formatbytes + for d in lst: + d['fmtsize'] = formatbytes(d['size'], + bytename='', kiloname='K', meganame='M') + d['fmtmtime'] = time.strftime('%Y-%m-%d %H:%M', + time.localtime(d['mtime']) ) + return lst + + +def _getNameWidth(lst): + width = max([len(d['name']) for d in lst] + [0]) + width = 4 * (width/4 + 1) + return width + + +def _getDownloadHTMLCode(drel): + lst = _getDownloadList(drel) + nw = _getNameWidth(lst) + fmt = "%-@NWs%-20s%-8s%s".replace('@NW', str(nw)) + header = ("
    " + fmt + '
    ') % \
+            ('Name', 'Date', 'Size', 'Downloads')
+    bodylines = []
+    for d in lst:
+        anchor = '%(name)s' % d
+        anchor += (nw - len(d['name'])) * " "
+        bline = fmt % (anchor, d['fmtmtime'], d['fmtsize'], d['dcount'])
+        bodylines.append(bline)
+    footer = '
    ' + code = header + "\n".join(bodylines) + footer + return code + + +# Published items + +def index(req): + return download(req) + +def download(req): + return _getDownloadHTMLCode('download') + +def packages(req): + return _getDownloadHTMLCode('packages') + + +# 
    Name                    Last modified      Size  Description
    diffpy-1.0b.1232.tgz    14-May-2007 21:00  6.9M  
+#   diffpy-1.0b.1232.exe    14-May-2007 21:00   20M  
+#   diffpy-1.0b.1218.tgz    07-May-2007 11:00  7.3M  
+#   diffpy-1.0b.1218.exe    07-May-2007 11:00   20M  
+#
    diff --git a/pybin/pathutils.py b/pybin/pathutils.py new file mode 100644 index 00000000..85a7268d --- /dev/null +++ b/pybin/pathutils.py @@ -0,0 +1,644 @@ +# 2005/12/06 +# Version 0.2.5 +# pathutils.py +# Functions useful for working with files and paths. +# http://www.voidspace.org.uk/python/recipebook.shtml#utils + +# Copyright Michael Foord 2004 +# Released subject to the BSD License +# Please see http://www.voidspace.org.uk/python/license.shtml + +# For information about bugfixes, updates and support, please join the Pythonutils mailing list. +# http://groups.google.com/group/pythonutils/ +# Comments, suggestions and bug reports welcome. +# Scripts maintained at http://www.voidspace.org.uk/python/index.shtml +# E-mail fuzzyman@voidspace.org.uk + +""" +This module contains convenience functions for working with files and paths. +""" + +from __future__ import generators +import os +import sys +import time + +__version__ = '0.2.5' + +__all__ = ( + 'readlines', + 'writelines', + 'readbinary', + 'writebinary', + 'readfile', + 'writefile', + 'tslash', + 'relpath', + 'splitall', + 'walkfiles', + 'walkdirs', + 'walkemptydirs', + 'formatbytes', + 'fullcopy', + 'import_path', + 'onerror', + 'get_main_dir', + 'main_is_frozen', + 'Lock', + 'LockError', + 'LockFile', + '__version__', + ) + +###################################### +# Functions to read and write files in text and binary mode. + +def readlines(filename): + """Passed a filename, it reads it, and returns a list of lines. (Read in text mode)""" + filehandle = open(filename, 'r') + outfile = filehandle.readlines() + filehandle.close() + return outfile + +def writelines(filename, infile, newline=False): + """ + Given a filename and a list of lines it writes the file. (In text mode) + + If ``newline`` is ``True`` (default is ``False``) it adds a newline to each + line. + """ + filehandle = open(filename, 'w') + if newline: + infile = [line + '\n' for line in infile] + filehandle.writelines(infile) + filehandle.close() + +def readbinary(filename): + """Given a filename, read a file in binary mode. It returns a single string.""" + filehandle = open(filename, 'rb') + thisfile = filehandle.read() + filehandle.close() + return thisfile + +def writebinary(filename, infile): + """Given a filename and a string, write the file in binary mode. """ + filehandle = open(filename, 'wb') + filehandle.write(infile) + filehandle.close() + +def readfile(filename): + """Given a filename, read a file in text mode. It returns a single string.""" + filehandle = open(filename, 'r') + outfile = filehandle.read() + filehandle.close() + return outfile + +def writefile(filename, infile): + """Given a filename and a string, write the file in text mode.""" + filehandle = open(filename, 'w') + filehandle.write(infile) + filehandle.close() + +#################################################################### +# Some functions for dealing with paths + +def tslash(apath): + """ + Add a trailing slash (``/``) to a path if it lacks one. + + It doesn't use ``os.sep`` because you end up in trouble on windoze, when you + want separators for URLs. + """ + if apath and apath != '.' and not apath.endswith('/') and not apath.endswith('\\'): + return apath + '/' + else: + return apath + +def relpath(origin, dest): + """ + Return the relative path between origin and dest. + + If it's not possible return dest. + + + If they are identical return ``os.curdir`` + + Adapted from `path.py `_ by Jason Orendorff. + """ + origin = os.path.abspath(origin).replace('\\', '/') + dest = os.path.abspath(dest).replace('\\', '/') + # + orig_list = splitall(os.path.normcase(origin)) + # Don't normcase dest! We want to preserve the case. + dest_list = splitall(dest) + # + if orig_list[0] != os.path.normcase(dest_list[0]): + # Can't get here from there. + return dest + # + # Find the location where the two paths start to differ. + i = 0 + for start_seg, dest_seg in zip(orig_list, dest_list): + if start_seg != os.path.normcase(dest_seg): + break + i += 1 + # + # Now i is the point where the two paths diverge. + # Need a certain number of "os.pardir"s to work up + # from the origin to the point of divergence. + segments = [os.pardir] * (len(orig_list) - i) + # Need to add the diverging part of dest_list. + segments += dest_list[i:] + if len(segments) == 0: + # If they happen to be identical, use os.curdir. + return os.curdir + else: + return os.path.join(*segments).replace('\\', '/') + +def splitall(loc): + """ + Return a list of the path components in loc. (Used by relpath_). + + The first item in the list will be either ``os.curdir``, ``os.pardir``, empty, + or the root directory of loc (for example, ``/`` or ``C:\\). + + The other items in the list will be strings. + + Adapted from *path.py* by Jason Orendorff. + """ + parts = [] + while loc != os.curdir and loc != os.pardir: + prev = loc + loc, child = os.path.split(prev) + if loc == prev: + break + parts.append(child) + parts.append(loc) + parts.reverse() + return parts + +####################################################################### +# a pre 2.3 walkfiles function - adapted from the path module by Jason Orendorff + +join = os.path.join +isdir = os.path.isdir +isfile = os.path.isfile + +def walkfiles(thisdir): + """ + walkfiles(D) -> iterator over files in D, recursively. Yields full file paths. + + Adapted from path.py by Jason Orendorff. + """ + for child in os.listdir(thisdir): + thischild = join(thisdir, child) + if isfile(thischild): + yield thischild + elif isdir(thischild): + for f in walkfiles(thischild): + yield f + +def walkdirs(thisdir): + """ + Walk through all the subdirectories in a tree. Recursively yields directory + names (full paths). + """ + for child in os.listdir(thisdir): + thischild = join(thisdir, child) + if isfile(thischild): + continue + elif isdir(thischild): + for f in walkdirs(thischild): + yield f + yield thischild + +def walkemptydirs(thisdir): + """ + Recursively yield names of *empty* directories. + + These are the only paths omitted when using ``walkfiles``. + """ + if not os.listdir(thisdir): + # if the directory is empty.. then yield it + yield thisdir + for child in os.listdir(thisdir): + thischild = join(thisdir, child) + if isdir(thischild): + for emptydir in walkemptydirs(thischild): + yield emptydir + +############################################################### +# formatbytes takes a filesize (as returned by os.getsize() ) +# and formats it for display in one of two ways !! + +def formatbytes(sizeint, configdict=None, **configs): + """ + Given a file size as an integer, return a nicely formatted string that + represents the size. Has various options to control it's output. + + You can pass in a dictionary of arguments or keyword arguments. Keyword + arguments override the dictionary and there are sensible defaults for options + you don't set. + + Options and defaults are as follows : + + * ``forcekb = False`` - If set this forces the output to be in terms + of kilobytes and bytes only. + + * ``largestonly = True`` - If set, instead of outputting + ``1 Mbytes, 307 Kbytes, 478 bytes`` it outputs using only the largest + denominator - e.g. ``1.3 Mbytes`` or ``17.2 Kbytes`` + + * ``kiloname = 'Kbytes'`` - The string to use for kilobytes + + * ``meganame = 'Mbytes'`` - The string to use for Megabytes + + * ``bytename = 'bytes'`` - The string to use for bytes + + * ``nospace = True`` - If set it outputs ``1Mbytes, 307Kbytes``, + notice there is no space. + + Example outputs : :: + + 19Mbytes, 75Kbytes, 255bytes + 2Kbytes, 0bytes + 23.8Mbytes + + .. note:: + + It currently uses the plural form even for singular. + """ + defaultconfigs = { 'forcekb' : False, + 'largestonly' : True, + 'kiloname' : 'Kbytes', + 'meganame' : 'Mbytes', + 'bytename' : 'bytes', + 'nospace' : True} + if configdict is None: + configdict = {} + for entry in configs: + # keyword parameters override the dictionary passed in + configdict[entry] = configs[entry] + # + for keyword in defaultconfigs: + if not configdict.has_key(keyword): + configdict[keyword] = defaultconfigs[keyword] + # + if configdict['nospace']: + space = '' + else: + space = ' ' + # + mb, kb, rb = bytedivider(sizeint) + if configdict['largestonly']: + if mb and not configdict['forcekb']: + return stringround(mb, kb)+ space + configdict['meganame'] + elif kb or configdict['forcekb']: + if mb and configdict['forcekb']: + kb += 1024*mb + return stringround(kb, rb) + space+ configdict['kiloname'] + else: + return str(rb) + space + configdict['bytename'] + else: + outstr = '' + if mb and not configdict['forcekb']: + outstr = str(mb) + space + configdict['meganame'] +', ' + if kb or configdict['forcekb'] or mb: + if configdict['forcekb']: + kb += 1024*mb + outstr += str(kb) + space + configdict['kiloname'] +', ' + return outstr + str(rb) + space + configdict['bytename'] + +def stringround(main, rest): + """ + Given a file size in either (mb, kb) or (kb, bytes) - round it + appropriately. + """ + # divide an int by a float... get a float + value = main + rest/1024.0 + return str(round(value, 1)) + +def bytedivider(nbytes): + """ + Given an integer (probably a long integer returned by os.getsize() ) + it returns a tuple of (megabytes, kilobytes, bytes). + + This can be more easily converted into a formatted string to display the + size of the file. + """ + mb, remainder = divmod(nbytes, 1048576) + kb, rb = divmod(remainder, 1024) + return (mb, kb, rb) + +######################################## + +def fullcopy(src, dst): + """ + Copy file from src to dst. + + If the dst directory doesn't exist, we will attempt to create it using makedirs. + """ + import shutil + if not os.path.isdir(os.path.dirname(dst)): + os.makedirs(os.path.dirname(dst)) + shutil.copy(src, dst) + +####################################### + +def import_path(fullpath, strict=True): + """ + Import a file from the full path. Allows you to import from anywhere, + something ``__import__`` does not do. + + If strict is ``True`` (the default), raise an ``ImportError`` if the module + is found in the "wrong" directory. + + Taken from firedrop2_ by `Hans Nowak`_ + + .. _firedrop2: http://www.voidspace.org.uk/python/firedrop2/ + .. _Hans Nowak: http://zephyrfalcon.org + """ + path, filename = os.path.split(fullpath) + filename, ext = os.path.splitext(filename) + sys.path.insert(0, path) + try: + module = __import__(filename) + except ImportError: + del sys.path[0] + raise + del sys.path[0] + # + if strict: + path = os.path.split(module.__file__)[0] + # FIXME: doesn't *startswith* allow room for errors ? + if not fullpath.startswith(path): + raise ImportError, "Module '%s' found, but not in '%s'" % ( + filename, fullpath) + # + return module + +############################################################################## +# These functions get us our directory name +# Even if py2exe or another freeze tool has been used + +def main_is_frozen(): + """Return ``True`` if we're running from a frozen program.""" + import imp + return ( + # new py2exe + hasattr(sys, "frozen") or + # tools/freeze + imp.is_frozen("__main__")) + +def get_main_dir(): + """Return the script directory - whether we're frozen or not.""" + if main_is_frozen(): + return os.path.abspath(os.path.dirname(sys.executable)) + return os.path.abspath(os.path.dirname(sys.argv[0])) + +############################## + +def onerror(func, path, exc_info): + """ + Error handler for ``shutil.rmtree``. + + If the error is due to an access error (read only file) + it attempts to add write permission and then retries. + + If the error is for another reason it re-raises the error. + + Usage : ``shutil.rmtree(path, onerror=onerror)`` + """ + import stat + if not os.access(path, os.W_OK): + # Is the error an access error ? + os.chmod(path, stat.S_IWUSR) + func(path) + else: + raise + +########################################################## +# A set of object for providing simple, cross-platform file locking + +class LockError(IOError): + """The generic error for locking - it is a subclass of ``IOError``.""" + +class Lock(object): + """A simple file lock, compatible with windows and Unixes.""" + + def __init__(self, filename, timeout=5, step=0.1): + """ + Create a ``Lock`` object on file ``filename`` + + ``timeout`` is the time in seconds to wait before timing out, when + attempting to acquire the lock. + + ``step`` is the number of seconds to wait in between each attempt to + acquire the lock. + + """ + self.timeout = timeout + self.step = step + self.filename = filename + self.locked = False + + def lock(self, force=True): + """ + Lock the file for access by creating a directory of the same name (plus + a trailing underscore). + + The file is only locked if you use this class to acquire the lock + before accessing. + + If ``force`` is ``True`` (the default), then on timeout we forcibly + acquire the lock. + + If ``force`` is ``False``, then on timeout a ``LockError`` is raised. + """ + if self.locked: + raise LockError('%s is already locked' % self.filename) + t = 0 + name = self._mungedname() + while t < self.timeout: + t += self.step + try: + if os.apth.isdir(name): + raise os.error + else: + os.mkdir() + except os.error, err: + time.sleep(self.step) + else: + self.locked = True + return + if force: + self.locked = True + else: + raise LockError('Failed to acquire lock on %s' % self.filename) + + def unlock(self, ignore=True): + """ + Release the lock. + + If ``ignore`` is ``True`` and removing the lock directory fails, then + the error is surpressed. (This may happen if the lock was acquired + via a timeout.) + """ + if not self.locked: + raise LockError('%s is not locked' % self.filename) + self.locked = False + try: + os.rmdir(self._mungedname()) + except os.error, err: + if not ignore: + raise LockError('unlocking appeared to fail - %s' % + self.filename) + + def _mungedname(self): + """ + Override this in a subclass if you want to change the way ``Lock`` + creates the directory name. + """ + return self.filename + '_' + + def __del__(self): + """Auto unlock when object is deleted.""" + if self.locked: + self.unlock() + +class LockFile(Lock): + """ + A file like object with an exclusive lock, whilst it is open. + + The lock is provided by the ``Lock`` class, which creates a directory + with the same name as the file (plus a trailing underscore), to indicate + that the file is locked. + + This is simple and cross platform, with some limitations : + + * Unusual process termination could result in the directory + being left. + * The process acquiring the lock must have permission to create a + directory in the same location as the file. + * It only locks the file against other processes that attempt to + acquire a lock using ``LockFile`` or ``Lock``. + """ + + def __init__(self, filename, mode='r', bufsize=-1, timeout=5, step=0.1, + force=True): + """ + Create a file like object that is locked (using the ``Lock`` class) + until it is closed. + + The file is only locked against another process that attempts to + acquire a lock using ``Lock`` (or ``LockFile``). + + The lock is released automatically when the file is closed. + + The filename, mode and bufsize arguments have the same meaning as for + the built in function ``open``. + + The timeout and step arguments have the same meaning as for a ``Lock`` + object. + + The force argument has the same meaning as for the ``Lock.lock`` method. + + A ``LockFile`` object has all the normal ``file`` methods and + attributes. + """ + Lock.__init__(self, filename, timeout, step) + # may raise an error if lock is ``False`` + self.lock(force) + # may also raise an error + self._file = open(filename, mode, bufsize) + + def close(self, ignore=True): + """ + close the file and release the lock. + + ignore has the same meaning as for ``Lock.unlock`` + """ + self._file.close() + self.unlock(ignore) + + def __getattr__(self, name): + """delegate appropriate method/attribute calls to the file.""" + if name not in self.__dict__: + return getattr(self._file, name) + else: + return self.__dict__[self, name] + + def __setattr__(self, name, value): + """Only allow attribute setting that don't clash with the file.""" + if not '_file' in self.__dict__: + Lock.__setattr__(self, name, value) + elif hasattr(self._file, name): + return setattr(self._file, name, value) + else: + Lock.__setattr__(self, name, value) + + def __del__(self): + """Auto unlock (and close file) when object is deleted.""" + if self.locked: + self.unlock() + self._file.close() + +""" + +Changelog +========= + +2006/07/22 Version 0.2.5 +----------------------------- + +Bugfix for Python 2.5 compatibility. + +2005/12/06 Version 0.2.4 +----------------------------- + +Fixed bug in ``onerror``. (Missing stat import) + + +2005/11/26 Version 0.2.3 +----------------------------- + +Added ``Lock``, ``LockError``, and ``LockFile`` + +Added ``__version__`` + + +2005/11/13 Version 0.2.2 +----------------------------- + +Added the py2exe support functions. + +Added ``onerror``. + + +2005/08/28 Version 0.2.1 +----------------------------- + +* Added ``import_path`` +* Added ``__all__`` +* Code cleanup + + +2005/06/01 Version 0.2.0 +----------------------------- + +Added ``walkdirs`` generator. + + +2005/03/11 Version 0.1.1 +----------------------------- + +Added rounding to ``formatbytes`` and improved ``bytedivider`` with ``divmod``. + +Now explicit keyword parameters override the ``configdict`` in ``formatbytes``. + + +2005/02/18 Version 0.1.0 +----------------------------- + +The first numbered version. +""" diff --git a/pybin/postbugreport.py b/pybin/postbugreport.py new file mode 100644 index 00000000..f601f74a --- /dev/null +++ b/pybin/postbugreport.py @@ -0,0 +1,67 @@ +#!/usr/bin/python + +_BUGSENDER = "diffpy@diffpy.org" +_BUGEMAIL = "diffpy-dev@googlegroups.com" +_SMTP_SERVER = "localhost" + +_MSG = """\ +From: %(bugsender)s +Subject: [%(component)s bug] %(summary)s +To: %(bugemail)s + +reporter: %(reporter)s + +summary: %(summary)s + +description: %(description)s + +component: %(component)s + +version: %(version)s + +traceback: %(traceback)s +""" + +def email(req, **kwargs): + """Process bugreport form and submit it to _BUGEMAIL address. + """ + # process form arguments + flds = { + # hidden data entries + 'bugemail' : _BUGEMAIL, + 'bugsender' : _BUGSENDER, + # entries from the form + 'reporter' : 'anonymous', + 'summary' : '', + 'description' : '', + 'component' : '', + 'version' : '', + 'traceback' : '' + } + flds.update(kwargs) + # check required fields + required_fields = ('summary', 'description') + missing_fields = [f for f in required_fields if not flds.get(f)] + if missing_fields: + emsg = "\n".join([ + "Required fields(s) missing: %s." % ", ".join(missing_fields), + "Please go back and correct the error" + ]) + "\n" + return emsg + # build email message + msg = _MSG % flds + # send it out + import smtplib + conn = smtplib.SMTP(_SMTP_SERVER) + conn.sendmail(flds['bugsender'], [flds['bugemail']], msg) + conn.quit() + # show message that was sent: + out = "\n".join([ + "", + "

    Bugreport emailed to %s" % flds['bugemail'], + "

    ", + "
    " + msg + "
    " + ]) + "\n" + return out + +# End of file diff --git a/requirements/docs.txt b/requirements/docs.txt deleted file mode 100644 index 871537c0..00000000 --- a/requirements/docs.txt +++ /dev/null @@ -1,5 +0,0 @@ -sphinx -sphinx_rtd_theme -doctr -m2r -make diff --git a/static_root/doc/diffpy-cmi/Juhas-aca-2015.pdf b/static_root/doc/diffpy-cmi/Juhas-aca-2015.pdf deleted file mode 100644 index 4439af32..00000000 Binary files a/static_root/doc/diffpy-cmi/Juhas-aca-2015.pdf and /dev/null differ diff --git a/static_root/doc/libdiffpy/index.html b/static_root/doc/libdiffpy/index.html deleted file mode 100644 index 208cd3b3..00000000 --- a/static_root/doc/libdiffpy/index.html +++ /dev/null @@ -1,13 +0,0 @@ - - - - - - - -Page Redirection - - -If you are not redirected automatically, follow the link diff --git a/static_root/doc/pdffit/Proffen-jac-1999.pdf b/static_root/doc/pdffit/Proffen-jac-1999.pdf deleted file mode 100644 index 3ed34895..00000000 Binary files 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    Package pdffit2

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    -
    -PDFfit2 - real space structure refinement program.
-Classes:
-    PdfFit
-Routines:
-    redirect_stdout
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    Version: - 1.1 -

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    -
    - 1  #!/usr/bin/env python 
- 2  ############################################################################## 
- 3  # 
- 4  # pdffit2           by DANSE Diffraction group 
- 5  #                   Simon J. L. Billinge 
- 6  #                   (c) 2006 trustees of the Michigan State University. 
- 7  #                   All rights reserved. 
- 8  # 
- 9  # File coded by:    Pavol Juhas 
-10  # 
-11  # See AUTHORS.txt for a list of people who contributed. 
-12  # See LICENSE.txt for license information. 
-13  # 
-14  ############################################################################## 
-15   
-16  """PDFfit2 - real space structure refinement program. 
-17  Classes: 
-18      PdfFit 
-19  Routines: 
-20      redirect_stdout 
-21  """ 
-22   
-23   
-24  from diffpy.pdffit2.version import __version__, __date__ 
-25  from diffpy.pdffit2.pdffit import PdfFit 
-26  from diffpy.pdffit2.output import redirect_stdout 
-27  from diffpy.pdffit2.pdffit2 import is_element 
-28   
-29   
-30  # unit tests 
-
    31 -def test(): 
-
    32      '''Execute all unit tests for the diffpy.pdffit2 package. 
-33      Return a unittest TestResult object. 
-34      ''' 
-35      from diffpy.pdffit2.tests import test 
-36      return test() 
-
    37   
-38  # End of file 
-39   
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    Module ipy_ext

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    -
    -This module defines functions within IPython session to simulate
-the old pdffit2 interactive session.
-
-Usage: %load_ext diffpy.pdffit2.ipy_ext
-
-
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    -   - - EasyPDFPlotting
    - Convenience functions for accessing and plotting PDFfit2 data. -
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    - 1  #!/usr/bin/env python 
- 2   
- 3  """This module defines functions within IPython session to simulate 
- 4  the old pdffit2 interactive session. 
- 5   
- 6  Usage: %load_ext diffpy.pdffit2.ipy_ext 
- 7  """ 
-
     8   
- 9   
-10 -def load_ipython_extension(ipython): 
-
    11      from diffpy.pdffit2 import PdfFit 
-12      pf = PdfFit() 
-13      pdf = EasyPDFPlotting(pf) 
-14      print('        Type  help(pdffit)  or  help(topic)  for information.') 
-15      print 
-16      ns = dict(pdffit=PdfFit, pdf=pdf) 
-17      pf._exportAll(ns) 
-18      ipython.user_ns.update(ns) 
-19      return 
-
    20   
-
    21   
-22 -class EasyPDFPlotting(object): 
-
    23      """Convenience functions for accessing and plotting PDFfit2 data. 
-24      """ 
-25   
-
    26 -    def __init__(self, pdffit_instance): 
-
    27          self._pdffit = pdffit_instance 
-28          return 
-
    29   
-30      @property 
-
    31 -    def r(self): 
-
    32          "R-grid for PDF simulation." 
-33          return self._asarray(self._pdffit.getR(), dtype=float) 
-
    34   
-35      @property 
-
    36 -    def Gobs(self): 
-
    37          "Observed PDF data." 
-38          return self._asarray(self._pdffit.getpdf_obs(), dtype=float) 
-
    39   
-40      @property 
-
    41 -    def Gcalc(self): 
-
    42          "Calculated PDF data." 
-43          return self._asarray(self._pdffit.getpdf_fit()) 
-
    44   
-45      @property 
-
    46 -    def Gdiff(self): 
-
    47          "Difference between the observed and simulated PDF." 
-48          return self.Gobs - self.Gcalc 
-
    49   
-
    50 -    def showfit(self, offset=None): 
-
    51          """Plot observed and simulated PDFs and the difference curve. 
-52   
-53          offset   -- offset for the difference curve. 
-54   
-55          No return value. 
-56          """ 
-57          from matplotlib.pyplot import gca 
-58          from math import floor 
-59          cr = self.r 
-60          cGobs = self.Gobs 
-61          cGcalc = self.Gcalc 
-62          cGdiff = self.Gdiff 
-63          if offset is None: 
-64              offset = floor(min([min(cGobs), min(cGcalc)]) - max(cGdiff)) 
-65          ax = gca() 
-66          ax.plot(cr, cGobs, 'r.', cr, cGcalc, 'b-', cr, cGdiff + offset, 'g-') 
-67          xl = ax.xaxis.get_label().get_text() 
-68          yl = ax.yaxis.get_label().get_text() 
-69          if xl == "": 
-70              ax.set_xlabel('r (A)') 
-71          if yl == "": 
-72              ax.set_ylabel('G (A**-2)') 
-73          return 
-
    74   
-
    75 -    def showRw(self): 
-
    76          "Plot cumulative Rw." 
-77          from matplotlib.pyplot import gca 
-78          cRw = self._asarray(self._pdffit.getcrw()) 
-79          ax = gca() 
-80          ax.plot(self.r, cRw) 
-81          ax.set_title('Cumulative Rw = %.4f' % cRw[-1]) 
-82          ax.set_xlabel('r') 
-83          ax.set_ylabel('Rw') 
-84          return 
-
    85   
-86      @staticmethod 
-
    87 -    def _asarray(x, dtype=None): 
-
    88          import numpy 
-89          return numpy.asarray(x, dtype=dtype) 
-
    90   
-91  # End of class EasyPDFPlotting 
-92   
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    Class EasyPDFPlotting

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    -object --+
-         |
-        EasyPDFPlotting
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    -
    -Convenience functions for accessing and plotting PDFfit2 data.
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    showfit(self, - offset=None)
    - Plot observed and simulated PDFs and the difference curve.    		 - source code - -
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    - Plot cumulative Rw.    		 - source code - -
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    -   - - r
    - R-grid for PDF simulation. -
    -   - - Gobs
    - Observed PDF data. -
    -   - - Gcalc
    - Calculated PDF data. -
    -   - - Gdiff
    - Difference between the observed and simulated PDF. -
    -

    Inherited from object: - __class__ -

    -
    - - - - - - -
    - - - - - -
    Method Details[hide private]
    -
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    - -
    - - -
    -

    __init__(self, - pdffit_instance) -
    (Constructor) -

    -     		source code  -
    - - 
    -x.__init__(...) initializes x; see help(type(x)) for signature
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    Overrides: - object.__init__ -
    (inherited documentation)
    - -
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    showfit(self, - offset=None) -

    -     		source code  -
    - - 
    -Plot observed and simulated PDFs and the difference curve.
-
-offset   -- offset for the difference curve.
-
-No return value.
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    r

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    -R-grid for PDF simulation.
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    unreachable.r(self) - - R-grid for PDF simulation. -
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    Gobs

    - 
    -Observed PDF data.
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    unreachable.Gobs(self) - - Observed PDF data. -
    -
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    - -
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    Gcalc

    - 
    -Calculated PDF data.
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    unreachable.Gcalc(self) - - Calculated PDF data. -
    -
    -
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    Gdiff

    - 
    -Difference between the observed and simulated PDF.
-
-
    -
    -
    Get Method:
    -
    unreachable.Gdiff(self) - - Difference between the observed and simulated PDF. -
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    Module output

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    -
    -Take care of sending engine output to given file-like object.
-The output file is stored in local module variable stdout.
-
-
    - - - - - - - - - - -
    - - - - - -
    Functions[hide private]
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    redirect_stdout(dst)
    - Redirect PDFfit2 standard output to a file-like object dst.    		 - source code - -
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    -   - - __package__ = 'diffpy.pdffit2' -
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    redirect_stdout(dst) -

    -     		source code  -
    - - 
    -Redirect PDFfit2 standard output to a file-like object dst.
-The dst value is stored in module variable stdout.
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    Source Code for Module diffpy.pdffit2.output

    -
    - 1  #!/usr/bin/env python 
- 2  ############################################################################## 
- 3  # 
- 4  # pdffit2           by DANSE Diffraction group 
- 5  #                   Simon J. L. Billinge 
- 6  #                   (c) 2007 trustees of the Michigan State University. 
- 7  #                   All rights reserved. 
- 8  # 
- 9  # File coded by:    Pavol Juhas 
-10  # 
-11  # See AUTHORS.txt for a list of people who contributed. 
-12  # See LICENSE.txt for license information. 
-13  # 
-14  ############################################################################## 
-15   
-16  """Take care of sending engine output to given file-like object. 
-17  The output file is stored in local module variable stdout. 
-18  """ 
-19   
-20   
-21  # create module variable stdout 
-22   
-23  from sys import stdout as stdout 
-24   
-
    25 -def redirect_stdout(dst): 
-
    26      """Redirect PDFfit2 standard output to a file-like object dst. 
-27      The dst value is stored in module variable stdout. 
-28      """ 
-29      from pdffit2 import redirect_stdout 
-30      redirect_stdout(dst) 
-31      global stdout 
-32      stdout = dst 
-33      return 
-
    34   
-35  #  End of file 
-36   
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    Module pdffit

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    -
    -PdfFit class for fitting pdf data to a model.
-
-
    - - - - - - - - - - -
    - - - - - -
    Classes[hide private]
    -
    -   - - PdfFit
    - Create PdfFit object. -
    - - - - - - - - - - - - - - - -
    - - - - - -
    Functions[hide private]
    -
    -   - - - - - - -
    _format_value_std(value, - stdev)
    - Convert value to a string with standard deviation in brackets.    		 - source code - -
    - -
    -   - - - - - - -
    _format_bond_length(dij, - ddij, - ij1, - symij)
    - Return string with formatted bond length info for a pair of atoms.    		 - source code - -
    - -
    -   - - - - - - -
    _convertCallable(var)
    - Convert an object to the result of its call when callable.    		 - source code - -
    - -
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    - - - - - -
    Variables[hide private]
    -
    -   - - __intro_message__ = '\n***************************************... -
    -   - - __package__ = 'diffpy.pdffit2' -
    -

    Imports: - types, - pdffit2, - output -


    - - - - - - -
    - - - - - -
    Function Details[hide private]
    -
    - -
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    - - -
    -

    _format_value_std(value, - stdev) -

    -     		source code  -
    - - 
    -Convert value to a string with standard deviation in brackets.
-
-value -- a number
-stdev -- standard deviation.  Ignored when small compared to value.
-
-Return string.
-
-
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    -
    -
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    - -
    - -
    - - -
    -

    _format_bond_length(dij, - ddij, - ij1, - symij) -

    -     		source code  -
    - - 
    -Return string with formatted bond length info for a pair of atoms.
-
-dij     -- distance between atoms i and j
-ddij    -- standard deviation of dij.  Ignored when small relative to dij.
-ij1     -- tuple of atom indices starting at 1
-symij   -- tuple of atom symbols
-
-Return formatted string.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    _convertCallable(var) -

    -     		source code  -
    - - 
    -Convert an object to the result of its call when callable.
-
-var -- string or callable object that returns string
-
-Return var or var().
-
-
    -
    -
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    -
    -
    - - - - - - -
    - - - - - -
    Variables Details[hide private]
    -
    - -
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    __intro_message__

    - -
    -
    -
    -
    Value:
    - 
    -'''
-**********************************************************************\
-********
-*                      P D F F I T   Version   %(version)s            \
-       *
-*                                              %(date)s               \
-       *
-* --------------------------------------------------------------------\
-...
-
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    Source Code for Module diffpy.pdffit2.pdffit

    -
    -   1  #!/usr/bin/env python 
-   2  ############################################################################## 
-   3  # 
-   4  # pdffit2           by DANSE Diffraction group 
-   5  #                   Simon J. L. Billinge 
-   6  #                   (c) 2006 trustees of the Michigan State University. 
-   7  #                   All rights reserved. 
-   8  # 
-   9  # File coded by:    Chris Farros, Pavol Juhas 
-  10  # 
-  11  # See AUTHORS.txt for a list of people who contributed. 
-  12  # See LICENSE.txt for license information. 
-  13  # 
-  14  ############################################################################## 
-  15   
-  16  """PdfFit class for fitting pdf data to a model.""" 
-  17   
-  18   
-  19  import types 
-  20   
-  21  # Load pdffit2 and output modules to the current namespace. 
-  22  # Note that "import diffpy.pdffit2.output as output" would 
-  23  # crash with AttributeError when executed during imports of 
-  24  # parent packages. 
-  25  from diffpy.pdffit2 import pdffit2 
-  26  from diffpy.pdffit2 import output 
-  27   
-  28  # helper routines 
-  29   
-
      30 -def _format_value_std(value, stdev): 
-
      31      """Convert value to a string with standard deviation in brackets. 
-  32   
-  33      value -- a number 
-  34      stdev -- standard deviation.  Ignored when small compared to value. 
-  35   
-  36      Return string. 
-  37      """ 
-  38      if stdev > abs(value)*1e-8: 
-  39          s = "%g (%g)" % (value, stdev) 
-  40      elif str(stdev) == 'nan': 
-  41          s = "%g (NaN)" % value 
-  42      else: 
-  43          s = "%g" % value 
-  44      return s 
-
      45   
-  46   
-
      47 -def _format_bond_length(dij, ddij, ij1, symij): 
-
      48      """Return string with formatted bond length info for a pair of atoms. 
-  49   
-  50      dij     -- distance between atoms i and j 
-  51      ddij    -- standard deviation of dij.  Ignored when small relative to dij. 
-  52      ij1     -- tuple of atom indices starting at 1 
-  53      symij   -- tuple of atom symbols 
-  54   
-  55      Return formatted string. 
-  56      """ 
-  57      w_smbidx = 10 
-  58      w_equals = 30 
-  59      s0 = "%s (#%i)" % (symij[0], ij1[0]) 
-  60      s1 = "%s (#%i)" % (symij[1], ij1[1]) 
-  61      leader0 = "   " + s0.ljust(w_smbidx) + " -   " + s1 + " " 
-  62      leader1 = leader0.ljust(w_equals) + '=   ' 
-  63      s = leader1 + _format_value_std(dij, ddij) + " A" 
-  64      return s 
-
      65   
-  66   
-
      67 -def _convertCallable(var): 
-
      68      """Convert an object to the result of its call when callable. 
-  69   
-  70      var -- string or callable object that returns string 
-  71   
-  72      Return var or var(). 
-  73      """ 
-  74      if callable(var): 
-  75          rv = var() 
-  76      else: 
-  77          rv = var 
-  78      return rv 
-
      79   
-  80   
-  81  # constants 
-  82   
-  83  __intro_message__ = """ 
-  84  ****************************************************************************** 
-  85  *                      P D F F I T   Version   %(version)s                   * 
-  86  *                                              %(date)s                      * 
-  87  * -------------------------------------------------------------------------- * 
-  88  * (c) 1998-2007 Trustees of the Michigan State University.                   * 
-  89  * (c) 2008-2016 Trustees of the Columbia University                          * 
-  90  *               in the city of New York.                                     * 
-  91  *                                                                            * 
-  92  * Authors:                                                                   * 
-  93  *     Thomas Proffen        -   Email: tproffen@lanl.gov                     * 
-  94  *     Jacques Bloch         -   Email: bloch@pa.msu.edu                      * 
-  95  *     Christopher Farrow    -   Email: clf2121@columbia.edu                  * 
-  96  *     Pavol Juhas           -   Email: pjuhas@bnl.gov 
-  97  *     Simon Billinge        -   Email: sb2896@columbia.edu                   * 
-  98  ****************************************************************************** 
-  99  """ 
- 100   
- 101   
- 102  ############################################################################## 
- 103   
- 104   
-
     105 -class PdfFit(object): 
-
     106      """Create PdfFit object.""" 
- 107   
- 108      # constants and enumerators from pdffit.h: 
- 109      # selection of all atoms 
- 110      selalias = { 'ALL' : -1 } 
- 111      # constraint type identifiers 
- 112      FCON = { 'USER' : 0, 'IDENT' : 1, 'FCOMP' : 2, 'FSQR' : 3 } 
- 113      # scattering type identifiers 
- 114      Sctp = { 'X' : 0, 'N' : 1 } 
- 115   
-
     116 -    def _exportAll(self, namespace): 
-
     117          """ _exportAll(self, namespace) --> Export all 'public' class methods 
- 118              into namespace. 
- 119   
- 120          This function allows for a module-level PdfFit object which doesn't have 
- 121          to be referenced when calling a method. This function makes old (python) 
- 122          scripts compatible with this class. At the top of the script, create a 
- 123          pdffit object, and then call this method. Usually, namespace = locals(). 
- 124          """ 
- 125          # string aliases (var = "var") 
- 126          for a in self.selalias.keys() + self.FCON.keys() + self.Sctp.keys(): 
- 127              exec("%s = %r" % (a, a), namespace) 
- 128          public = [ a for a in dir(self) if "__" not in a and a not in 
- 129                  ["_handle", "_exportAll", "selalias", "FCON", "Sctp" ] ] 
- 130          for funcname in public: 
- 131              namespace[funcname] = getattr(self, funcname) 
- 132          return 
-
     133   
-
     134 -    def intro(): 
-
     135          """Show introductory message. 
- 136          """ 
- 137          import re 
- 138          from diffpy.pdffit2 import __version__, __date__ 
- 139          date = __date__[:10] 
- 140          d = {'version' : __version__,  'date' : date} 
- 141          msg = __intro_message__ % d 
- 142          filler = lambda mx : (mx.group(0).rstrip(' *').ljust(77) + '*') 
- 143          msg_ljust = re.sub('(?m)^(.{1,77}|.{79}.*)$', filler, msg) 
- 144          print >> output.stdout, msg_ljust 
- 145          return 
-
     146      intro = staticmethod(intro) 
- 147   
- 148   
-
     149 -    def add_structure(self, stru): 
-
     150          """add_structure(stru) --> Add new structure to PdfFit instance. 
- 151   
- 152          stru -- instance of Structure class from diffpy.Structure. 
- 153   
- 154          No return value. 
- 155          Raises pdffit2.structureError when stru contains unknown 
- 156          atom species. 
- 157          """ 
- 158          s = stru.writeStr('pdffit') 
- 159          self.read_struct_string(s) 
- 160          return 
-
     161   
- 162   
-
     163 -    def read_struct(self, struct): 
-
     164          """read_struct(struct) --> Read structure from file into memory. 
- 165   
- 166          struct  -- name of file from which to read structure 
- 167   
- 168          Raises: 
- 169              pdffit2.calculationError when a lattice cannot be created from the 
- 170              given structure 
- 171              pdffit2.structureError when a structure file is malformed 
- 172              IOError when the file cannot be read from the disk 
- 173          """ 
- 174          pdffit2.read_struct(self._handle, struct) 
- 175          self.stru_files.append(struct) 
- 176          return 
-
     177   
- 178   
-
     179 -    def read_struct_string(self, struct, name=""): 
-
     180          """read_struct_string(struct, name = "") --> Read structure from 
- 181          a string into memory. 
- 182   
- 183          struct  -- string containing the contents of the structure file 
- 184          name    -- tag with which to label structure 
- 185   
- 186          Raises: 
- 187              pdffit2.calculationError when a lattice cannot be created from the 
- 188              given structure 
- 189              pdffit2.structureError when a structure file is malformed 
- 190          """ 
- 191          pdffit2.read_struct_string(self._handle, struct) 
- 192          self.stru_files.append(name) 
- 193          return 
-
     194   
- 195   
-
     196 -    def read_data(self, data, stype, qmax, qdamp): 
-
     197          """read_data(data, stype, qmax, qdamp) --> Read pdf data from file into 
- 198          memory. 
- 199   
- 200          data    -- name of file from which to read data 
- 201          stype   -- 'X' (xray) or 'N' (neutron) 
- 202          qmax    -- Q-value cutoff used in PDF calculation. 
- 203                     Use qmax=0 to neglect termination ripples. 
- 204          qdamp   -- instrumental Q-resolution factor 
- 205   
- 206          Raises: IOError when the file cannot be read from disk 
- 207          """ 
- 208          pdffit2.read_data(self._handle, data, stype, qmax, qdamp) 
- 209          self.data_files.append(data) 
- 210          return 
-
     211   
- 212   
-
     213 -    def read_data_string(self, data, stype, qmax, qdamp, name=""): 
-
     214          """read_data_string(data, stype, qmax, qdamp, name = "") --> Read 
- 215          pdf data from a string into memory. 
- 216   
- 217          data    -- string containing the contents of the data file 
- 218          stype   -- 'X' (xray) or 'N' (neutron) 
- 219          qmax    -- Q-value cutoff used in PDF calculation. 
- 220                     Use qmax=0 to neglect termination ripples. 
- 221          qdamp   -- instrumental Q-resolution factor 
- 222          name    -- tag with which to label data 
- 223          """ 
- 224          pdffit2.read_data_string(self._handle, data, stype, qmax, 
- 225                  qdamp, name) 
- 226          name = data 
- 227          self.data_files.append(name) 
- 228          return 
-
     229   
- 230   
-
     231 -    def read_data_lists(self, stype, qmax, qdamp, r_data, Gr_data, 
- 232              dGr_data = None, name = "list"): 
-
     233          """read_data_lists(stype, qmax, qdamp, r_data, Gr_data, dGr_data = 
- 234          None, name = "list") --> Read pdf data into memory from lists. 
- 235   
- 236          All lists must be of the same length. 
- 237          stype       -- 'X' (xray) or 'N' (neutron) 
- 238          qmax        -- Q-value cutoff used in PDF calculation. 
- 239                         Use qmax=0 to neglect termination ripples. 
- 240          qdamp       -- instrumental Q-resolution factor 
- 241          r_data      -- list of r-values 
- 242          Gr_data     -- list of G(r) values 
- 243          dGr_data    -- list of G(r) uncertainty values 
- 244          name        -- tag with which to label data 
- 245   
- 246          Raises: ValueError when the data lists are of different length 
- 247          """ 
- 248          pdffit2.read_data_arrays(self._handle, stype, qmax, qdamp, 
- 249                  r_data, Gr_data, dGr_data, name) 
- 250          self.data_files.append(name) 
- 251          return 
-
     252   
- 253   
-
     254 -    def pdfrange(self, iset, rmin, rmax): 
-
     255          """pdfrange(iset, rmin, rmax) --> Set the range of the fit. 
- 256   
- 257          iset    -- data set to consider 
- 258          rmin    -- minimum r-value of fit 
- 259          rmax    -- maximum r-value of fit 
- 260   
- 261          Raises: ValueError for bad input values 
- 262          """ 
- 263          pdffit2.pdfrange(self._handle, iset, rmin, rmax) 
- 264          return 
-
     265   
- 266   
-
     267 -    def reset(self): 
-
     268          """reset() --> Clear all stored fit, structure, and parameter data.""" 
- 269          self.stru_files = [] 
- 270          self.data_files = [] 
- 271          pdffit2.reset(self._handle); 
- 272          return 
-
     273   
- 274   
-
     275 -    def alloc(self, stype, qmax, qdamp, rmin, rmax, bin): 
-
     276          """alloc(stype, qmax, qdamp, rmin, rmax, bin) --> Allocate space 
- 277          for a PDF calculation. 
- 278   
- 279          The structure from which to calculate the PDF must first be imported 
- 280          with the read_struct() or read_struct_string() method. 
- 281          stype   -- 'X' (xray) or 'N' (neutron) 
- 282          qmax    -- Q-value cutoff used in PDF calculation. 
- 283                     Use qmax=0 to neglect termination ripples. 
- 284          qdamp   -- instrumental Q-resolution factor 
- 285          rmin    -- minimum r-value of calculation 
- 286          rmax    -- maximum r-value of calculation 
- 287          bin     -- number of data points in calculation 
- 288   
- 289          Raises: 
- 290              ValueError for bad input values 
- 291              pdffit.unassignedError when no structure has been loaded 
- 292          """ 
- 293          pdffit2.alloc(self._handle, stype, qmax, qdamp, rmin, 
- 294                  rmax, bin) 
- 295          return 
-
     296   
- 297   
-
     298 -    def calc(self): 
-
     299          """calc() --> Calculate the PDF of the imported structure. 
- 300   
- 301          Space for the calculation must first be allocated with the alloc() 
- 302          method. 
- 303   
- 304          Raises: 
- 305              pdffit2.calculationError when allocated space cannot 
- 306              accomodate calculation 
- 307              pdffit.unassignedError when space for calculation has not been 
- 308              allocated 
- 309          """ 
- 310          pdffit2.calc(self._handle) 
- 311          return 
-
     312   
- 313   
-
     314 -    def refine(self, toler=0.00000001): 
-
     315          """refine(toler = 0.00000001) --> Fit the theory to the imported data. 
- 316   
- 317          toler   --  tolerance of the fit 
- 318   
- 319          Raises: 
- 320              pdffit2.calculationError when the model pdf cannot be calculated 
- 321              pdffit2.constraintError when refinement fails due to bad 
- 322              constraint 
- 323              pdffit2.unassigedError when a constraint used but never initialized 
- 324              using setpar() 
- 325          """ 
- 326          step = 0 
- 327          finished = 0 
- 328          while not finished: 
- 329              finished = pdffit2.refine_step(self._handle, toler) 
- 330              step += 1 
- 331          return 
-
     332   
- 333   
-
     334 -    def refine_step(self, toler=0.00000001): 
-
     335          """refine_step(toler = 0.00000001) --> Run a single step of the fit. 
- 336   
- 337          toler   --  tolerance of the fit 
- 338   
- 339          Raises: 
- 340              pdffit2.calculationError when the model pdf cannot be calculated 
- 341              pdffit2.constraintError when refinement fails due to bad 
- 342              constraint 
- 343              pdffit2.unassigedError when a constraint used but never initialized 
- 344              using setpar() 
- 345   
- 346          Returns: 1 (0) if refinement is (is not) finished 
- 347          """ 
- 348          self.finished = pdffit2.refine_step(self._handle, toler) 
- 349          return self.finished 
-
     350   
- 351   
-
     352 -    def save_pdf(self, iset, fname): 
-
     353          """save_pdf(iset, fname) --> Save calculated or fitted PDF to file. 
- 354   
- 355          iset    -- data set to save 
- 356   
- 357          Raises: 
- 358              IOError if file cannot be saved 
- 359              pdffit2.unassignedError if the data set is undefined 
- 360          """ 
- 361          pdffit2.save_pdf(self._handle, iset, fname) 
- 362          return 
-
     363   
- 364   
-
     365 -    def save_pdf_string(self, iset): 
-
     366          """save_pdf_string(iset) --> Save calculated or fitted PDF to string. 
- 367   
- 368          iset    -- data set to save 
- 369   
- 370          Raises: 
- 371              pdffit2.unassignedError if the data set is undefined 
- 372   
- 373          Returns: string containing contents of save file 
- 374          """ 
- 375          pdffilestring = pdffit2.save_pdf(self._handle, iset, "") 
- 376          return pdffilestring 
-
     377   
- 378   
-
     379 -    def save_dif(self, iset, fname): 
-
     380          """save_dif(iset, fname) --> Save data and fitted PDF difference to 
- 381          file. 
- 382   
- 383          iset    -- data set to save 
- 384   
- 385          Raises: 
- 386              IOError if file cannot be saved 
- 387              pdffit2.unassignedError if the data set is undefined 
- 388          """ 
- 389          pdffit2.save_dif(self._handle, iset, fname) 
- 390          return 
-
     391   
- 392   
-
     393 -    def save_dif_string(self, iset): 
-
     394          """save_dif_string(iset) --> Save data and fitted PDF difference to 
- 395          string. 
- 396   
- 397          iset    -- data set to save 
- 398   
- 399          Raises: 
- 400              pdffit2.unassignedError if the data set is undefined 
- 401   
- 402          Returns: string containing contents of save file 
- 403          """ 
- 404          diffilestring = pdffit2.save_dif(self._handle, iset, "") 
- 405          return diffilestring 
-
     406   
- 407   
-
     408 -    def save_res(self, fname): 
-
     409          """save_res(fname) --> Save fit-specific data to file. 
- 410   
- 411          Raises: 
- 412              IOError if file cannot be saved 
- 413              pdffit2.unassignedError if there is no refinement data to save 
- 414          """ 
- 415          pdffit2.save_res(self._handle, fname) 
- 416          return 
-
     417   
- 418   
-
     419 -    def save_res_string(self): 
-
     420          """save_res_string() --> Save fit-specific data to a string. 
- 421   
- 422          Raises: 
- 423              pdffit2.unassignedError if there is no refinement data to save 
- 424   
- 425          Returns: string containing contents of save file 
- 426          """ 
- 427          resfilestring = pdffit2.save_res(self._handle, "") 
- 428          return resfilestring 
-
     429   
- 430   
-
     431 -    def get_structure(self, ip): 
-
     432          """get_structure(ip) --> Get a copy of specified phase data. 
- 433   
- 434          ip -- index of existing PdfFit phase starting from 1 
- 435   
- 436          Return Structure object from diffpy.Structure. 
- 437          Raise pdffit2.unassignedError if phase ip is undefined. 
- 438          """ 
- 439          from diffpy.Structure import PDFFitStructure 
- 440          s = self.save_struct_string(ip) 
- 441          stru = PDFFitStructure() 
- 442          stru.readStr(s, 'pdffit') 
- 443          return stru 
-
     444   
- 445   
-
     446 -    def save_struct(self, ip, fname): 
-
     447          """save_struct(ip, fname) --> Save structure resulting from fit 
- 448          to file. 
- 449   
- 450          ip    -- phase to save 
- 451   
- 452          Raises: 
- 453              IOError if file cannot be saved 
- 454              pdffit2.unassignedError if the data set is undefined 
- 455          """ 
- 456          pdffit2.save_struct(self._handle, ip, fname) 
- 457          return 
-
     458   
- 459   
-
     460 -    def save_struct_string(self, ip): 
-
     461          """save_struct(ip) --> Save structure resulting from fit to string. 
- 462   
- 463          ip    -- phase to save 
- 464   
- 465          Raises: 
- 466              pdffit2.unassignedError if phase ip is undefined. 
- 467   
- 468          Returns: string containing contents of save file 
- 469          """ 
- 470          structfilestring = pdffit2.save_struct(self._handle, ip, "") 
- 471          return structfilestring 
-
     472   
- 473   
-
     474 -    def show_struct(self, ip): 
-
     475          """show_struct(ip) --> Print structure resulting from fit. 
- 476   
- 477          ip    -- phase to display 
- 478   
- 479          Raises: pdffit2.unassignedError if the phase is undefined 
- 480          """ 
- 481          pdffit2.show_struct(self._handle, ip) 
- 482          return 
-
     483   
- 484   
-
     485 -    def constrain(self, var, par, fcon=None): 
-
     486          """constrain(var, par[, fcon]) --> Constrain a variable to a parameter. 
- 487   
- 488          A variable can be constrained to a number or equation string. 
- 489          var     -- variable to constrain, such as x(1) 
- 490          par     -- parameter which to constrain the variable. This can be 
- 491                     an integer or an equation string containing a reference 
- 492                     to another parameter. Equation strings use standard c++ 
- 493                     syntax. The value of a constrained parameter is accessed 
- 494                     as @p in an equation string, where p is the parameter. 
- 495                     e.g. 
- 496                     >>>  constrain(x(1), 1) 
- 497                     >>>  constrain(x(2), "0.5+@1") 
- 498          fcon    -- 'USER', 'IDENT', 'FCOMP', or 'FSQR' 
- 499                     this is an optional parameter, and I don't know how it is 
- 500                     used! 
- 501   
- 502          Raises: 
- 503              pdffit2.constraintError if a constraint is bad 
- 504              pdffit2.unassignedError if variable does not yet exist 
- 505              ValueError if variable index does not exist (e.g. lat(7)) 
- 506          """ 
- 507          var_ref = self.__getRef(var) 
- 508          varnc = _convertCallable(var) 
- 509          if fcon: 
- 510              fc = self.FCON[fcon] 
- 511              pdffit2.constrain_int(self._handle, var_ref, varnc, par, fc) 
- 512          elif type(par) == types.StringType: 
- 513              pdffit2.constrain_str(self._handle, var_ref, varnc, par) 
- 514          else: 
- 515              pdffit2.constrain_int(self._handle, var_ref, varnc, par) 
- 516          return 
-
     517   
- 518   
-
     519 -    def setpar(self, par, val): 
-
     520          """setpar(par, val) --> Set value of constrained parameter. 
- 521   
- 522          val     --  Either a numerical value or a reference to a variable 
- 523   
- 524          Raises: 
- 525              pdffit2.unassignedError when variable is yet to be assigned 
- 526          """ 
- 527          # people do not use parenthesis, e.g., "setpar(3, qdamp)" 
- 528          # in such case val is a reference to PdfFit method 
- 529          val = _convertCallable(val) 
- 530          try: 
- 531              val = float(val) 
- 532              pdffit2.setpar_dbl(self._handle, par, val) 
- 533          except ValueError: 
- 534              var_ref = self.__getRef(val) 
- 535              pdffit2.setpar_RV(self._handle, par, var_ref) 
- 536          return 
-
     537   
- 538   
-
     539 -    def setvar(self, var, val): 
-
     540          """setvar(var, val) --> Set the value of a variable. 
- 541   
- 542          Raises: 
- 543              pdffit2.unassignedError if variable does not yet exist 
- 544              ValueError if variable index does not exist (e.g. lat(7)) 
- 545          """ 
- 546          var_ref = self.__getRef(var) 
- 547          pdffit2.setvar(self._handle, var_ref, val) 
- 548          return 
-
     549   
- 550   
-
     551 -    def getvar(self, var): 
-
     552          """getvar(var) --> Get stored value of a variable. 
- 553   
- 554          Raises: 
- 555              pdffit2.unassignedError if variable does not yet exist 
- 556              ValueError if variable index does not exist (e.g. lat(7)) 
- 557          """ 
- 558          var_ref = self.__getRef(var) 
- 559          retval = pdffit2.getvar(self._handle, var_ref) 
- 560          return retval 
-
     561   
- 562   
-
     563 -    def getrw(self): 
-
     564          """getrw() --> Get normalized total error of the fit rw. 
- 565   
- 566          getrw calculates total fit error summed for all datasets in the fit. 
- 567   
- 568          Return float. 
- 569          """ 
- 570          rw = pdffit2.getrw(self._handle) 
- 571          return rw 
-
     572   
- 573   
-
     574 -    def getcrw(self): 
-
     575          """getcrw() --> Get cumulative Rw for the current dataset. 
- 576   
- 577          Cumulative Rw is a list of Rw partial sums cost values evaluated against 
- 578          observed PDF data in the error sums evaluated against 
- 579          the r-points in the fit. 
- 580   
- 581          Raises: pdffit2.unassignedError if no data exists 
- 582   
- 583          Returns: List of crw points, equidistant in r or empty list 
- 584          if the refine function has not been called yet. 
- 585          """ 
- 586          crw = pdffit2.getcrw(self._handle) 
- 587          return crw 
-
     588   
- 589   
-
     590 -    def getR(self): 
-
     591          """getR() --> Get r-points used in the fit. 
- 592   
- 593          This function should only be called after data has been loaded or 
- 594          calculated. Before a refinement, the list of r-points will reflect the 
- 595          data. Afterwords, they will reflect the fit range. 
- 596   
- 597          Raises: pdffit2.unassignedError if no data exists 
- 598   
- 599          Returns: List of equidistance r-points used in fit. 
- 600          """ 
- 601          R = pdffit2.getR(self._handle) 
- 602          return R 
-
     603   
- 604   
-
     605 -    def getpdf_fit(self): 
-
     606          """getpdf_fit() --> Get fitted PDF. 
- 607   
- 608          This function should only be called after a refinement or refinement 
- 609          step has been done. 
- 610   
- 611          Raises: pdffit2.unassignedError if no data exists 
- 612   
- 613          Returns: List of fitted points, equidistant in r. 
- 614          """ 
- 615          pdfdata = pdffit2.getpdf_fit(self._handle) 
- 616          return pdfdata 
-
     617   
- 618   
-
     619 -    def getpdf_obs(self): 
-
     620          """getpdf_obs() --> Get observed PDF. 
- 621   
- 622          This function should only be called after data has been loaded or 
- 623          calculated. Before a refinement, the list of r-points will reflect the 
- 624          data. Afterwords, they will reflect the fit range. 
- 625   
- 626          Raises: pdffit2.unassignedError if no data exists 
- 627   
- 628          Returns: List of data points, equidistant in r. 
- 629          """ 
- 630          pdfdata = pdffit2.getpdf_obs(self._handle) 
- 631          return pdfdata 
-
     632   
- 633   
-
     634 -    def getpdf_diff(self): 
-
     635          """Obtain difference between observed and fitted PDF. 
- 636   
- 637          This function should only be called after data has been loaded or 
- 638          calculated. Before a refinement, the list of r-points will reflect the 
- 639          data. Afterwords, they will reflect the fit range. 
- 640   
- 641          Raises: pdffit2.unassignedError if no data exists 
- 642   
- 643          Returns: List of data points, equidistant in r. 
- 644          """ 
- 645          Gdiff = pdffit2.getpdf_diff(self._handle) 
- 646          return Gdiff 
-
     647   
- 648   
-
     649 -    def get_atoms(self, ip=None): 
-
     650          """get_atoms() --> Get element symbols of all atoms in the structure. 
- 651   
- 652          ip -- index of phase to get the elements from (starting from 1) 
- 653                when ip is not given, use current phase 
- 654   
- 655          This function should only be called after a structure has been loaded. 
- 656   
- 657          Raises: pdffit2.unassignedError if no structure exists 
- 658   
- 659          Returns: List of atom names in structure. 
- 660          """ 
- 661          if ip is None:  rv = pdffit2.get_atoms(self._handle) 
- 662          else:           rv = pdffit2.get_atoms(self._handle, ip) 
- 663          return rv 
-
     664   
- 665   
-
     666 -    def get_atom_types(self, ip=None): 
-
     667          """get_atom_types() --> Ordered unique element symbols in the structure. 
- 668   
- 669          ip -- index of phase to get the elements from (starting from 1) 
- 670                when ip is not given, use current phase 
- 671   
- 672          This function should only be called after a structure has been loaded. 
- 673   
- 674          Raises: 
- 675              pdffit2.unassignedError if no structure exists 
- 676   
- 677          Returns: List of unique atom symbols as they occur in structure. 
- 678          """ 
- 679          if ip is None:  rv = pdffit2.get_atom_types(self._handle) 
- 680          else:           rv = pdffit2.get_atom_types(self._handle, ip) 
- 681          return rv 
-
     682   
- 683   
-
     684 -    def getpar(self, par): 
-
     685          """getpar(par) --> Get value of parameter. 
- 686   
- 687          Raises: ValueError if parameter does not exists 
- 688          """ 
- 689          return pdffit2.getpar(self._handle, par) 
-
     690   
- 691   
-
     692 -    def fixpar(self, par): 
-
     693          """fixpar(par) --> Fix a parameter. 
- 694   
- 695          Fixed parameters are not fitted in a refinement. Passed parameter 
- 696          can be 'ALL', in which case all parameters are fixed. 
- 697   
- 698          Raises: pdffit.unassignedError when parameter has not been assigned 
- 699          """ 
- 700          if type(par) in types.StringTypes and par.upper() in self.selalias: 
- 701              par = self.selalias[par.upper()] 
- 702          pdffit2.fixpar(self._handle, par) 
- 703          return 
-
     704   
- 705   
-
     706 -    def freepar(self, par): 
-
     707          """freepar(par) --> Free a parameter. 
- 708   
- 709          Freed parameters are fitted in a refinement. Passed parameter 
- 710          can be 'ALL', in which case all parameters are freed. 
- 711   
- 712          Raises: pdffit.unassignedError when parameter has not been assigned 
- 713          """ 
- 714          if type(par) in types.StringTypes and par.upper() in self.selalias: 
- 715              par = self.selalias[par.upper()] 
- 716          pdffit2.freepar(self._handle, par) 
- 717          return 
-
     718   
- 719   
-
     720 -    def setphase(self, ip): 
-
     721          """setphase(ip) --> Switch to phase ip. 
- 722   
- 723          ip  -- index of the phase starting at 1. 
- 724   
- 725          All parameters assigned after this method is called refer only to the 
- 726          current phase. 
- 727   
- 728          Raises: pdffit.unassignedError when phase does not exist 
- 729          """ 
- 730          pdffit2.setphase(self._handle, ip) 
- 731          return 
-
     732   
- 733   
-
     734 -    def setdata(self, iset): 
-
     735          """setdata(iset) --> Set the data set in focus. 
- 736   
- 737          iset -- integer index of data set starting at 1. 
- 738   
- 739          Raises: pdffit.unassignedError when data set does not exist 
- 740          """ 
- 741          pdffit2.setdata(self._handle, iset) 
- 742          return 
-
     743   
- 744   
-
     745 -    def psel(self, ip): 
-
     746          """psel(ip) --> Include phase ip in calculation of total PDF 
- 747   
- 748          psel('ALL')     selects all phases for PDF calculation. 
- 749   
- 750          Raises: pdffit2.unassignedError if selected phase does not exist 
- 751          """ 
- 752          if type(ip) in types.StringTypes and ip.upper() in self.selalias: 
- 753              ip = self.selalias[ip.upper()] 
- 754          pdffit2.psel(self._handle, ip) 
- 755          return 
-
     756   
- 757   
-
     758 -    def pdesel(self, ip): 
-
     759          """pdesel(ip) --> Exclude phase ip from calculation of total PDF. 
- 760   
- 761          pdesel('ALL')   excludes all phases from PDF calculation. 
- 762   
- 763          Raises: pdffit2.unassignedError if selected phase does not exist 
- 764          """ 
- 765          if type(ip) in types.StringTypes and ip.upper() in self.selalias: 
- 766              ip = self.selalias[ip.upper()] 
- 767          pdffit2.pdesel(self._handle, ip) 
- 768          return 
-
     769   
- 770   
-
     771 -    def selectAtomType(self, ip, ijchar, symbol, flag): 
-
     772          """Configure partial PDF - mark the specified atom type in phase ip 
- 773          as included or excluded as a first or second in pair for distance 
- 774          evaluation. 
- 775   
- 776          ip      -- phase index starting at 1 
- 777          ijchar  -- 'i' or 'j' for first or second in pair 
- 778          symbol  -- element symbol 
- 779          flag    -- bool flag, True for selection, False for exclusion 
- 780   
- 781          Raises: 
- 782              pdffit2.unassignedError if selected phase does not exist 
- 783              ValueError for invalid value of ijchar 
- 784          """ 
- 785          pdffit2.selectAtomType(self._handle, ip, ijchar, symbol, flag) 
- 786          return 
-
     787   
- 788   
-
     789 -    def selectAtomIndex(self, ip, ijchar, aidx, flag): 
-
     790          """Configure partial PDF - mark the atom of given index in phase ip 
- 791          as included or excluded as a first or second in pair for distance 
- 792          evaluation. 
- 793   
- 794          ip      -- phase index starting at 1 
- 795          ijchar  -- 'i' or 'j' for first or second in pair 
- 796          aidx    -- integer index of atom starting at 1 
- 797          flag    -- bool flag, True for selection, False for exclusion 
- 798   
- 799          Raises: 
- 800              pdffit2.unassignedError if selected phase does not exist 
- 801              ValueError if atom index or ijchar are invalid 
- 802          """ 
- 803          pdffit2.selectAtomIndex(self._handle, ip, ijchar, aidx, flag) 
- 804          return 
-
     805   
- 806   
-
     807 -    def selectAll(self, ip, ijchar): 
-
     808          """Configure partial PDF - include all atoms of phase ip as first or 
- 809          second element in pair for distance evaluation. 
- 810   
- 811          ip      -- phase index starting at 1 
- 812          ijchar  -- 'i' or 'j' for first or second in pair 
- 813   
- 814          Raises: 
- 815              pdffit2.unassignedError if selected phase does not exist 
- 816              ValueError if ijchar is invalid 
- 817          """ 
- 818          pdffit2.selectAll(self._handle, ip, ijchar) 
- 819          return 
-
     820   
- 821   
-
     822 -    def selectNone(self, ip, ijchar): 
-
     823          """Configure partial PDF - exclude all atoms of phase ip from first 
- 824          or second element of pair distance evaluation. 
- 825   
- 826          ip      -- phase index starting at 1 
- 827          ijchar  -- 'i' or 'j' for first or second in pair 
- 828   
- 829          Raises: 
- 830              pdffit2.unassignedError if selected phase does not exist 
- 831              ValueError if ijchar is invalid 
- 832          """ 
- 833          pdffit2.selectNone(self._handle, ip, ijchar) 
- 834          return 
-
     835   
- 836   
-
     837 -    def bang(self, i, j, k): 
-
     838          """bang(i, j, k) --> Show bond angle defined by atoms i, j, k. 
- 839   
- 840          No return value.  Use bond_angle() to get the result. 
- 841   
- 842          Raises: ValueError if selected atom(s) does not exist 
- 843                  pdffit.unassignedError when no structure has been loaded 
- 844          """ 
- 845          angle, stdev = pdffit2.bond_angle(self._handle, i, j, k) 
- 846          # indices should be already checked here by bond_angle 
- 847          atom_symbols = self.get_atoms() 
- 848          leader = "   %s (#%i) - %s (#%i) - %s (#%i)   =   " % \ 
- 849                  (atom_symbols[i-1], i, atom_symbols[j-1], j, 
- 850                   atom_symbols[k-1], k) 
- 851          s = leader + _format_value_std(angle, stdev) + " degrees" 
- 852          print >> output.stdout, s 
- 853          return 
-
     854   
- 855   
-
     856 -    def bond_angle(self, i, j, k): 
-
     857          """bond_angle(i, j, k) --> bond angle defined by atoms i, j, k. 
- 858          Angle is calculated using the shortest ji and jk lengths with 
- 859          respect to periodic boundary conditions. 
- 860   
- 861          i, j, k  -- atom indices starting at 1 
- 862   
- 863          Return a tuple of (angle, angle_error), both values are in degrees. 
- 864   
- 865          Raises: ValueError if selected atom(s) does not exist 
- 866                  pdffit.unassignedError when no structure has been loaded 
- 867          """ 
- 868          rv = pdffit2.bond_angle(self._handle, i, j, k) 
- 869          return rv 
-
     870   
- 871   
-
     872 -    def blen(self, *args): 
-
     873          """blen(i, j) --> Show bond length defined by atoms i and j. 
- 874   
- 875          i      -- index of the first atom starting at 1 
- 876          j      -- index of the second atom starting at 1 
- 877   
- 878          No return value.  Use bond_length_atoms() to retrieve result. 
- 879   
- 880          Second form: 
- 881   
- 882          blen(a1, a2, lb, ub) --> Show sorted lengths of all a1-a2 bonds. 
- 883   
- 884          a1     -- symbol of the first element in pair or "ALL" 
- 885          a2     -- symbol of the second element in pair or "ALL" 
- 886          lb     -- lower bond length boundary 
- 887          ub     -- upper bond length boundary 
- 888   
- 889          No return value.  Use bond_length_types() to retrieve results. 
- 890   
- 891          Raises: ValueError if selected atom(s) does not exist 
- 892                  pdffit.unassignedError when no structure has been loaded 
- 893          """ 
- 894          # first form 
- 895          if len(args)==2: 
- 896              dij, ddij = self.bond_length_atoms(*args[0:2]) 
- 897              atom_symbols = self.get_atoms() 
- 898              ij = (args[0], args[1]) 
- 899              # check ij 
- 900              if min(ij) - 1 < 0 or max(ij) - 1 >= len(atom_symbols): 
- 901                  emsg = "Incorrect atom number(s): %i, %j" % ij 
- 902                  raise ValueError, emsg 
- 903              symij = ( atom_symbols[ij[0] - 1].upper(), 
- 904                        atom_symbols[ij[1] - 1].upper() ) 
- 905              print >> output.stdout, _format_bond_length(dij, ddij, ij, symij) 
- 906          # second form 
- 907          elif len(args)==4: 
- 908              a1, a2, lb, ub = args 
- 909              try: 
- 910                  atom_types = self.get_atom_types() 
- 911                  if type(a1) is types.IntType:   a1 = atom_types[a1 - 1] 
- 912                  if type(a2) is types.IntType:   a2 = atom_types[a2 - 1] 
- 913              except IndexError: 
- 914                  # index of non-existant atom type 
- 915                  return 
- 916              # arguments are OK here, get bond length dictionary 
- 917              bld = pdffit2.bond_length_types(self._handle, a1, a2, lb, ub) 
- 918              s = "(%s,%s) bond lengths in [%gA,%gA] for current phase :" % \ 
- 919                      (a1, a2, lb, ub) 
- 920              print >> output.stdout, s 
- 921              atom_symbols = self.get_atoms() 
- 922              npts = len(bld['dij']) 
- 923              for idx in range(npts): 
- 924                  dij = bld['dij'][idx] 
- 925                  ddij = bld['ddij'][idx] 
- 926                  ij0 = bld['ij0'][idx] 
- 927                  ij1 = bld['ij1'][idx] 
- 928                  symij = (atom_symbols[ij0[0]], atom_symbols[ij0[1]]) 
- 929                  s = _format_bond_length(dij, ddij, ij1, symij) 
- 930                  print >> output.stdout, s 
- 931              print >> output.stdout 
- 932              if not bld['dij']: 
- 933                  print >> output.stdout, "   *** No pairs found ***" 
- 934          else: 
- 935              emsg = "blen() takes 2 or 4 arguments (%i given)" % len(args) 
- 936              raise TypeError, emsg 
- 937          # done 
- 938          return 
-
     939   
- 940   
-
     941 -    def bond_length_atoms(self, i, j): 
-
     942          """bond_length_atoms(i, j) --> shortest distance between atoms i, j. 
- 943          Periodic boundary conditions are applied to find the shortest bond. 
- 944   
- 945          i   -- index of the first atom starting at 1 
- 946          j   -- index of the second atom starting at 1 
- 947   
- 948          Return a tuple of (distance, distance_error). 
- 949   
- 950          Raises: ValueError if selected atom(s) does not exist 
- 951                  pdffit.unassignedError when no structure has been loaded. 
- 952          """ 
- 953          rv = pdffit2.bond_length_atoms(self._handle, i, j) 
- 954          return rv 
-
     955   
- 956   
-
     957 -    def bond_length_types(self, a1, a2, lb, ub): 
-
     958          """bond_length_types(a1, a2, lb, ub) --> get all a1-a2 distances. 
- 959   
- 960          a1     -- symbol of the first element in pair or "ALL" 
- 961          a2     -- symbol of the second element in pair or "ALL" 
- 962          lb     -- lower bond length boundary 
- 963          ub     -- upper bond length boundary 
- 964   
- 965          Return a dictionary of distance data containing 
- 966   
- 967          dij  : list of bond lenghts within given bounds 
- 968          ddij : list of bond legnth standard deviations 
- 969          ij0  : pairs of atom indices starting from 0 
- 970          ij1  : pairs of atom indices starting from 1 
- 971   
- 972          Raises: ValueError if selected atom(s) does not exist 
- 973                  pdffit.unassignedError when no structure has been loaded. 
- 974          """ 
- 975          rv = pdffit2.bond_length_types(self._handle, a1, a2, lb, ub) 
- 976          return rv 
-
     977   
- 978   
-
     979 -    def show_scat(self, stype): 
-
     980          """show_scat(stype) --> Print scattering length for all atoms in 
- 981          the current phase. 
- 982   
- 983          stype -- 'X' (xray) or 'N' (neutron). 
- 984   
- 985          Raises: pdffit2.unassignedError if no phase exists 
- 986          """ 
- 987          print >> output.stdout, self.get_scat_string(stype) 
- 988          return 
-
     989   
- 990   
-
     991 -    def get_scat_string(self, stype): 
-
     992          """get_scat_string(stype) --> Get string with scattering factors 
- 993          of all atoms in the current phase. 
- 994   
- 995          stype -- 'X' (xray) or 'N' (neutron). 
- 996   
- 997          Raises: 
- 998              pdffit2.unassignedError if no phase exists 
- 999   
-1000          Returns: string with all scattering factors. 
-1001          """ 
-1002          return pdffit2.get_scat_string(self._handle, stype) 
-
    1003   
-1004   
-
    1005 -    def get_scat(self, stype, element): 
-
    1006          """get_scat(stype, element) --> Get active scattering factor for 
-1007          given element.  If scattering factor has been changed using 
-1008          set_scat the result may depend on the active phase.  When no 
-1009          phase has been loaded, return the standard value. 
-1010   
-1011          stype   -- 'X' (xray) or 'N' (neutron). 
-1012          element -- case-insensitive element symbol such as "Na" or "CL" 
-1013   
-1014          Return float. 
-1015   
-1016          Raises: 
-1017              ValueError if element is not known. 
-1018          """ 
-1019          rv = pdffit2.get_scat(self._handle, stype, element) 
-1020          return rv 
-
    1021   
-1022   
-
    1023 -    def set_scat(self, stype, element, value): 
-
    1024          """set_scat(stype, element, value) --> Set custom scattering factor 
-1025          for given element.  The new scattering factor applies only for the 
-1026          current phase, in other phases it keeps its default value. 
-1027   
-1028          stype   -- 'X' (xray) or 'N' (neutron). 
-1029          element -- case-insensitive element symbol such as "Na" or "CL" 
-1030          value   -- new value of scattering factor 
-1031   
-1032          No return value. 
-1033   
-1034          Raises: 
-1035              pdffit2.unassignedError if no phase exists. 
-1036              ValueError if element is not known. 
-1037   
-1038          See also reset_scat, get_scat. 
-1039          """ 
-1040          pdffit2.set_scat(self._handle, stype, element, value) 
-1041          return 
-
    1042   
-1043   
-
    1044 -    def reset_scat(self, element): 
-
    1045          """reset_scat(stype, element) --> Reset scattering factors for 
-1046          given element to their standard values.  The reset_scat applies 
-1047          only for the current phase. 
-1048   
-1049          element -- case-insensitive element symbol such as "Na" or "CL" 
-1050          Raises: 
-1051              pdffit2.unassignedError if no phase exists 
-1052              ValueError if element is not known. 
-1053          """ 
-1054          pdffit2.reset_scat(self._handle, element) 
-1055          return 
-
    1056   
-1057   
-
    1058 -    def num_atoms(self): 
-
    1059          """num_atoms() --> Get number of atoms in current phase. 
-1060   
-1061          Raises: pdffit2.unassignedError if no atoms exist 
-1062          """ 
-1063          return pdffit2.num_atoms(self._handle) 
-
    1064   
-1065   
-
    1066 -    def num_phases(self): 
-
    1067          """num_phases() --> Number of phases loaded in PdfFit instance. 
-1068   
-1069          Use setphase to bring a specific phase in focus. 
-1070   
-1071          Return integer. 
-1072          """ 
-1073          n = pdffit2.num_phases(self._handle) 
-1074          return n 
-
    1075   
-1076   
-
    1077 -    def num_datasets(self): 
-
    1078          """num_datasets() --> Number of datasets loaded in PdfFit instance. 
-1079   
-1080          Use setdata to bring a specific dataset in focus. 
-1081   
-1082          Return integer. 
-1083          """ 
-1084          n = pdffit2.num_datasets(self._handle) 
-1085          return n 
-
    1086   
-1087   
-
    1088 -    def phase_fractions(self): 
-
    1089          """phase_fractions() --> relative phase fractions for current dataset. 
-1090          Convert phase scale factors to relative phase fractions given the 
-1091          scattering type of current dataset. 
-1092   
-1093          Return a dictionary of phase fractions with following keys: 
-1094   
-1095          "atom"    -- list of fractions normalized to atom count 
-1096          "stdatom" -- errors of atom count fractions 
-1097          "cell"    -- list of fractions normalized to unit cell count 
-1098          "stdcell" -- errors of unit cell count fractions 
-1099          "mass"    -- list of relative weight fractions 
-1100          "stdmass" -- errors of relative weight fractions 
-1101   
-1102          Raises: pdffit2.unassignedError if no dataset exists. 
-1103          """ 
-1104          return pdffit2.phase_fractions(self._handle) 
-
    1105   
-1106      # Begin refinable variables. 
-1107   
-
    1108 -    def lat(n): 
-
    1109          """lat(n) --> Get reference to lattice variable n. 
-1110   
-1111          n can be an integer or a string representing the lattice variable. 
-1112          1 <==> 'a' 
-1113          2 <==> 'b' 
-1114          3 <==> 'c' 
-1115          4 <==> 'alpha' 
-1116          5 <==> 'beta' 
-1117          6 <==> 'gamma' 
-1118          """ 
-1119          LatParams = { 'a':1, 'b':2, 'c':3, 'alpha':4, 'beta':5, 'gamma':6 } 
-1120          if type(n) is types.StringType: 
-1121              n = LatParams[n] 
-1122          return "lat(%i)" % n 
-
    1123      lat = staticmethod(lat) 
-1124   
-1125   
-
    1126 -    def x(i): 
-
    1127          """x(i) --> Get reference to x-value of atom i.""" 
-1128          return "x(%i)" % i 
-
    1129      x = staticmethod(x) 
-1130   
-1131   
-
    1132 -    def y(i): 
-
    1133          """y(i) --> Get reference to y-value of atom i.""" 
-1134          return "y(%i)" % i 
-
    1135      y = staticmethod(y) 
-1136   
-1137   
-
    1138 -    def z(i): 
-
    1139          """z(i) --> Get reference to z-value of atom i.""" 
-1140          return "z(%i)" % i 
-
    1141      z = staticmethod(z) 
-1142   
-1143   
-
    1144 -    def u11(i): 
-
    1145          """u11(i) --> Get reference to U(1,1) for atom i. 
-1146   
-1147          U is the anisotropic thermal factor tensor. 
-1148          """ 
-1149          return "u11(%i)" % i 
-
    1150      u11 = staticmethod(u11) 
-1151   
-1152   
-
    1153 -    def u22(i): 
-
    1154          """u22(i) --> Get reference to U(2,2) for atom i. 
-1155   
-1156          U is the anisotropic thermal factor tensor. 
-1157          """ 
-1158          return "u22(%i)" % i 
-
    1159      u22 = staticmethod(u22) 
-1160   
-1161   
-
    1162 -    def u33(i): 
-
    1163          """u33(i) --> Get reference to U(3,3) for atom i. 
-1164   
-1165          U is the anisotropic thermal factor tensor. 
-1166          """ 
-1167          return "u33(%i)" % i 
-
    1168      u33 = staticmethod(u33) 
-1169   
-1170   
-
    1171 -    def u12(i): 
-
    1172          """u12(i) --> Get reference to U(1,2) for atom i. 
-1173   
-1174          U is the anisotropic thermal factor tensor. 
-1175          """ 
-1176          return "u12(%i)" % i 
-
    1177      u12 = staticmethod(u12) 
-1178   
-1179   
-
    1180 -    def u13(i): 
-
    1181          """u13(i) --> Get reference to U(1,3) for atom i. 
-1182   
-1183          U is the anisotropic thermal factor tensor. 
-1184          """ 
-1185          return "u13(%i)" % i 
-
    1186      u13 = staticmethod(u13) 
-1187   
-1188   
-
    1189 -    def u23(i): 
-
    1190          """u23(i) --> Get reference to U(2,3) for atom i. 
-1191   
-1192          U is the anisotropic thermal factor tensor. 
-1193          """ 
-1194          return "u23(%i)" % i 
-
    1195      u23 = staticmethod(u23) 
-1196   
-1197   
-
    1198 -    def occ(i): 
-
    1199          """occ(i) --> Get reference to occupancy of atom i.""" 
-1200          return "occ(%i)" % i 
-
    1201      occ = staticmethod(occ) 
-1202   
-1203   
-
    1204 -    def pscale(): 
-
    1205          """pscale() --> Get reference to pscale. 
-1206   
-1207          pscale is the fraction of the total structure that the current phase 
-1208          represents. 
-1209          """ 
-1210          return "pscale" 
-
    1211      pscale = staticmethod(pscale) 
-1212   
-1213   
-
    1214 -    def sratio(): 
-
    1215          """sratio() --> Get reference to sigma ratio. 
-1216   
-1217          The sigma ratio determines the reduction in the Debye-Waller factor for 
-1218          distances below rcut. 
-1219          """ 
-1220          return "sratio" 
-
    1221      sratio = staticmethod(sratio) 
-1222   
-1223   
-
    1224 -    def delta1(): 
-
    1225          """delta1() --> Get reference to 1/R peak sharpening factor. 
-1226          """ 
-1227          return "delta1" 
-
    1228      delta1 = staticmethod(delta1) 
-1229   
-1230   
-
    1231 -    def delta2(): 
-
    1232          """delta2() --> Reference to (1/R^2) sharpening factor. 
-1233          The phenomenological correlation constant in the Debye-Waller factor. 
-1234          The (1/R^2) peak sharpening factor. 
-1235          """ 
-1236          return "delta2" 
-
    1237      delta2 = staticmethod(delta2) 
-1238   
-1239   
-
    1240 -    def dscale(): 
-
    1241          """dscale() --> Get reference to dscale. 
-1242   
-1243          The data scale factor. 
-1244          """ 
-1245          return "dscale" 
-
    1246      dscale = staticmethod(dscale) 
-1247   
-1248   
-
    1249 -    def qdamp(): 
-
    1250          """qdamp() --> Get reference to qdamp. 
-1251   
-1252          Qdamp controls PDF damping due to instrument Q-resolution. 
-1253          """ 
-1254          return "qdamp" 
-
    1255      qdamp = staticmethod(qdamp) 
-1256   
-1257   
-
    1258 -    def qbroad(): 
-
    1259          """qbroad() --> Get reference to qbroad. 
-1260   
-1261          Quadratic peak broadening factor. 
-1262          """ 
-1263          return "qbroad" 
-
    1264      qbroad = staticmethod(qbroad) 
-1265   
-1266   
-
    1267 -    def spdiameter(): 
-
    1268          """spdiameter() --> Get reference to spdiameter (phase property). 
-1269   
-1270          Diameter value for the spherical particle PDF correction. 
-1271          Spherical envelope is not applied when spdiameter equals 0. 
-1272          """ 
-1273          return "spdiameter" 
-
    1274      spdiameter = staticmethod(spdiameter) 
-1275   
-1276   
-
    1277 -    def stepcut(): 
-
    1278          """stepcut() --> Get reference to stepcut (phase property). 
-1279   
-1280          stepcut is cutoff radius for empirical step-function PDF envelope. 
-1281          stepcut can be used to approximate loss of pair correlations 
-1282          in amorphous phase.  stepcut cannot be refined. 
-1283   
-1284          Step cutoff is not applied when stepcut equals 0. 
-1285          """ 
-1286          return "stepcut" 
-
    1287      stepcut = staticmethod(stepcut) 
-1288   
-1289   
-
    1290 -    def rcut(): 
-
    1291          """rcut() --> Get reference to rcut. 
-1292   
-1293          rcut is the value of r below which peak sharpening, defined by 
-1294          the sigma ratio (sratio), applies.  rcut cannot be refined. 
-1295          """ 
-1296          return "rcut" 
-
    1297      rcut = staticmethod(rcut) 
-1298   
-1299   
-1300      # End refinable variables. 
-1301   
-
    1302 -    def __init__(self): 
-
    1303   
-1304          self.stru_files = [] 
-1305          self.data_files = [] 
-1306   
-1307          self._handle = pdffit2.create() 
-1308          self.intro() 
-1309          return 
-
    1310   
-1311   
-
    1312 -    def __getRef(self, var_string): 
-
    1313          """Return the actual reference to the variable in the var_string. 
-1314   
-1315          This function must be called before trying to actually reference an 
-1316          internal variable. See the constrain method for an example. 
-1317   
-1318          Raises: 
-1319              pdffit2.unassignedError if variable is not yet assigned 
-1320              ValueError if variable index does not exist (e.g. lat(7)) 
-1321          """ 
-1322          var_string = _convertCallable(var_string) 
-1323          arg_int = None 
-1324          try: 
-1325              method_string, arg_string = var_string.split("(") 
-1326              method_string = method_string.strip() 
-1327              arg_int = int(arg_string.strip(")").strip()) 
-1328          except ValueError: #There is no arg_string 
-1329              method_string = var_string.strip() 
-1330   
-1331          f = getattr(pdffit2, method_string) 
-1332          if arg_int is None: 
-1333              retval = f(self._handle) 
-1334          else: 
-1335              retval = f(self._handle, arg_int) 
-1336          return retval 
-
    1337   
-1338   
-1339  # End of class PdfFit 
-1340   
-1341   
-1342  # End of file 
-1343   
-
    -
    - - - - - - - - - - - - - - - - - - -
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    diffpy.pdffit2
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    diffpy.pdffit2
    - - - - - -
    - - Package diffpy :: - Package pdffit2 :: - Module pdffit :: - Class PdfFit - - - - - - -
    [hide private]
    [frames] | no frames]
    -
    - -

    Class PdfFit

    source code

    -
    -object --+
-         |
-        PdfFit
-
    - -
    -
    -Create PdfFit object.
-
-
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    - - - - - -
    Instance Methods[hide private]
    -
    -   - - - - - - -
    _exportAll(self, - namespace)
    - _exportAll(self, namespace) --> Export all 'public' class methods - into namespace.    		 - source code - -
    - -
    -   - - - - - - -
    add_structure(self, - stru)
    - add_structure(stru) --> Add new structure to PdfFit instance.    		 - source code - -
    - -
    -   - - - - - - -
    read_struct(self, - struct)
    - read_struct(struct) --> Read structure from file into memory.    		 - source code - -
    - -
    -   - - - - - - -
    read_struct_string(self, - struct, - name='')
    - read_struct_string(struct, name = "") --> Read structure from -a string into memory.    		 - source code - -
    - -
    -   - - - - - - -
    read_data(self, - data, - stype, - qmax, - qdamp)
    - read_data(data, stype, qmax, qdamp) --> Read pdf data from file into -memory.    		 - source code - -
    - -
    -   - - - - - - -
    read_data_string(self, - data, - stype, - qmax, - qdamp, - name='')
    - read_data_string(data, stype, qmax, qdamp, name = "") --> Read -pdf data from a string into memory.    		 - source code - -
    - -
    -   - - - - - - -
    read_data_lists(self, - stype, - qmax, - qdamp, - r_data, - Gr_data, - dGr_data=None, - name='list')
    - read_data_lists(stype, qmax, qdamp, r_data, Gr_data, dGr_data = -None, name = "list") --> Read pdf data into memory from lists.    		 - source code - -
    - -
    -   - - - - - - -
    pdfrange(self, - iset, - rmin, - rmax)
    - pdfrange(iset, rmin, rmax) --> Set the range of the fit.    		 - source code - -
    - -
    -   - - - - - - -
    reset(self)
    - reset() --> Clear all stored fit, structure, and parameter data.    		 - source code - -
    - -
    -   - - - - - - -
    alloc(self, - stype, - qmax, - qdamp, - rmin, - rmax, - bin)
    - alloc(stype, qmax, qdamp, rmin, rmax, bin) --> Allocate space -for a PDF calculation.    		 - source code - -
    - -
    -   - - - - - - -
    calc(self)
    - calc() --> Calculate the PDF of the imported structure.    		 - source code - -
    - -
    -   - - - - - - -
    refine(self, - toler=1e-08)
    - refine(toler = 0.00000001) --> Fit the theory to the imported data.    		 - source code - -
    - -
    -   - - - - - - -
    refine_step(self, - toler=1e-08)
    - refine_step(toler = 0.00000001) --> Run a single step of the fit.    		 - source code - -
    - -
    -   - - - - - - -
    save_pdf(self, - iset, - fname)
    - save_pdf(iset, fname) --> Save calculated or fitted PDF to file.    		 - source code - -
    - -
    -   - - - - - - -
    save_pdf_string(self, - iset)
    - save_pdf_string(iset) --> Save calculated or fitted PDF to string.    		 - source code - -
    - -
    -   - - - - - - -
    save_dif(self, - iset, - fname)
    - save_dif(iset, fname) --> Save data and fitted PDF difference to -file.    		 - source code - -
    - -
    -   - - - - - - -
    save_dif_string(self, - iset)
    - save_dif_string(iset) --> Save data and fitted PDF difference to -string.    		 - source code - -
    - -
    -   - - - - - - -
    save_res(self, - fname)
    - save_res(fname) --> Save fit-specific data to file.    		 - source code - -
    - -
    -   - - - - - - -
    save_res_string(self)
    - save_res_string() --> Save fit-specific data to a string.    		 - source code - -
    - -
    -   - - - - - - -
    get_structure(self, - ip)
    - get_structure(ip) --> Get a copy of specified phase data.    		 - source code - -
    - -
    -   - - - - - - -
    save_struct(self, - ip, - fname)
    - save_struct(ip, fname) --> Save structure resulting from fit -to file.    		 - source code - -
    - -
    -   - - - - - - -
    save_struct_string(self, - ip)
    - save_struct(ip) --> Save structure resulting from fit to string.    		 - source code - -
    - -
    -   - - - - - - -
    show_struct(self, - ip)
    - show_struct(ip) --> Print structure resulting from fit.    		 - source code - -
    - -
    -   - - - - - - -
    constrain(self, - var, - par, - fcon=None)
    - constrain(var, par[, fcon]) --> Constrain a variable to a parameter.    		 - source code - -
    - -
    -   - - - - - - -
    setpar(self, - par, - val)
    - setpar(par, val) --> Set value of constrained parameter.    		 - source code - -
    - -
    -   - - - - - - -
    setvar(self, - var, - val)
    - setvar(var, val) --> Set the value of a variable.    		 - source code - -
    - -
    -   - - - - - - -
    getvar(self, - var)
    - getvar(var) --> Get stored value of a variable.    		 - source code - -
    - -
    -   - - - - - - -
    getrw(self)
    - getrw() --> Get normalized total error of the fit rw.    		 - source code - -
    - -
    -   - - - - - - -
    getcrw(self)
    - getcrw() --> Get cumulative Rw for the current dataset.    		 - source code - -
    - -
    -   - - - - - - -
    getR(self)
    - getR() --> Get r-points used in the fit.    		 - source code - -
    - -
    -   - - - - - - -
    getpdf_fit(self)
    - getpdf_fit() --> Get fitted PDF.    		 - source code - -
    - -
    -   - - - - - - -
    getpdf_obs(self)
    - getpdf_obs() --> Get observed PDF.    		 - source code - -
    - -
    -   - - - - - - -
    getpdf_diff(self)
    - Obtain difference between observed and fitted PDF.    		 - source code - -
    - -
    -   - - - - - - -
    get_atoms(self, - ip=None)
    - get_atoms() --> Get element symbols of all atoms in the structure.    		 - source code - -
    - -
    -   - - - - - - -
    get_atom_types(self, - ip=None)
    - get_atom_types() --> Ordered unique element symbols in the structure.    		 - source code - -
    - -
    -   - - - - - - -
    getpar(self, - par)
    - getpar(par) --> Get value of parameter.    		 - source code - -
    - -
    -   - - - - - - -
    fixpar(self, - par)
    - fixpar(par) --> Fix a parameter.    		 - source code - -
    - -
    -   - - - - - - -
    freepar(self, - par)
    - freepar(par) --> Free a parameter.    		 - source code - -
    - -
    -   - - - - - - -
    setphase(self, - ip)
    - setphase(ip) --> Switch to phase ip.    		 - source code - -
    - -
    -   - - - - - - -
    setdata(self, - iset)
    - setdata(iset) --> Set the data set in focus.    		 - source code - -
    - -
    -   - - - - - - -
    psel(self, - ip)
    - psel(ip) --> Include phase ip in calculation of total PDF    		 - source code - -
    - -
    -   - - - - - - -
    pdesel(self, - ip)
    - pdesel(ip) --> Exclude phase ip from calculation of total PDF.    		 - source code - -
    - -
    -   - - - - - - -
    selectAtomType(self, - ip, - ijchar, - symbol, - flag)
    - Configure partial PDF - mark the specified atom type in phase ip -as included or excluded as a first or second in pair for distance -evaluation.    		 - source code - -
    - -
    -   - - - - - - -
    selectAtomIndex(self, - ip, - ijchar, - aidx, - flag)
    - Configure partial PDF - mark the atom of given index in phase ip -as included or excluded as a first or second in pair for distance -evaluation.    		 - source code - -
    - -
    -   - - - - - - -
    selectAll(self, - ip, - ijchar)
    - Configure partial PDF - include all atoms of phase ip as first or -second element in pair for distance evaluation.    		 - source code - -
    - -
    -   - - - - - - -
    selectNone(self, - ip, - ijchar)
    - Configure partial PDF - exclude all atoms of phase ip from first -or second element of pair distance evaluation.    		 - source code - -
    - -
    -   - - - - - - -
    bang(self, - i, - j, - k)
    - bang(i, j, k) --> Show bond angle defined by atoms i, j, k.    		 - source code - -
    - -
    -   - - - - - - -
    bond_angle(self, - i, - j, - k)
    - bond_angle(i, j, k) --> bond angle defined by atoms i, j, k.    		 - source code - -
    - -
    -   - - - - - - -
    blen(self, - *args)
    - blen(i, j) --> Show bond length defined by atoms i and j.    		 - source code - -
    - -
    -   - - - - - - -
    bond_length_atoms(self, - i, - j)
    - bond_length_atoms(i, j) --> shortest distance between atoms i, j.    		 - source code - -
    - -
    -   - - - - - - -
    bond_length_types(self, - a1, - a2, - lb, - ub)
    - bond_length_types(a1, a2, lb, ub) --> get all a1-a2 distances.    		 - source code - -
    - -
    -   - - - - - - -
    show_scat(self, - stype)
    - show_scat(stype) --> Print scattering length for all atoms in -the current phase.    		 - source code - -
    - -
    -   - - - - - - -
    get_scat_string(self, - stype)
    - get_scat_string(stype) --> Get string with scattering factors -of all atoms in the current phase.    		 - source code - -
    - -
    -   - - - - - - -
    get_scat(self, - stype, - element)
    - get_scat(stype, element) --> Get active scattering factor for -given element.    		 - source code - -
    - -
    -   - - - - - - -
    set_scat(self, - stype, - element, - value)
    - set_scat(stype, element, value) --> Set custom scattering factor -for given element.    		 - source code - -
    - -
    -   - - - - - - -
    reset_scat(self, - element)
    - reset_scat(stype, element) --> Reset scattering factors for -given element to their standard values.    		 - source code - -
    - -
    -   - - - - - - -
    num_atoms(self)
    - num_atoms() --> Get number of atoms in current phase.    		 - source code - -
    - -
    -   - - - - - - -
    num_phases(self)
    - num_phases() --> Number of phases loaded in PdfFit instance.    		 - source code - -
    - -
    -   - - - - - - -
    num_datasets(self)
    - num_datasets() --> Number of datasets loaded in PdfFit instance.    		 - source code - -
    - -
    -   - - - - - - -
    phase_fractions(self)
    - phase_fractions() --> relative phase fractions for current dataset.    		 - source code - -
    - -
    -   - - - - - - -
    __init__(self)
    - x.__init__(...) initializes x; see help(type(x)) for signature    		 - source code - -
    - -
    -   - - - - - - -
    __getRef(self, - var_string)
    - Return the actual reference to the variable in the var_string.    		 - source code - -
    - -
    -

    Inherited from object: - __delattr__, - __format__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__, - __sizeof__, - __str__, - __subclasshook__ -

    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    - - - - - -
    Static Methods[hide private]
    -
    -   - - - - - - -
    intro()
    - Show introductory message.    		 - source code - -
    - -
    -   - - - - - - -
    lat(n)
    - lat(n) --> Get reference to lattice variable n.    		 - source code - -
    - -
    -   - - - - - - -
    x(i)
    - x(i) --> Get reference to x-value of atom i.    		 - source code - -
    - -
    -   - - - - - - -
    y(i)
    - y(i) --> Get reference to y-value of atom i.    		 - source code - -
    - -
    -   - - - - - - -
    z(i)
    - z(i) --> Get reference to z-value of atom i.    		 - source code - -
    - -
    -   - - - - - - -
    u11(i)
    - u11(i) --> Get reference to U(1,1) for atom i.    		 - source code - -
    - -
    -   - - - - - - -
    u22(i)
    - u22(i) --> Get reference to U(2,2) for atom i.    		 - source code - -
    - -
    -   - - - - - - -
    u33(i)
    - u33(i) --> Get reference to U(3,3) for atom i.    		 - source code - -
    - -
    -   - - - - - - -
    u12(i)
    - u12(i) --> Get reference to U(1,2) for atom i.    		 - source code - -
    - -
    -   - - - - - - -
    u13(i)
    - u13(i) --> Get reference to U(1,3) for atom i.    		 - source code - -
    - -
    -   - - - - - - -
    u23(i)
    - u23(i) --> Get reference to U(2,3) for atom i.    		 - source code - -
    - -
    -   - - - - - - -
    occ(i)
    - occ(i) --> Get reference to occupancy of atom i.    		 - source code - -
    - -
    -   - - - - - - -
    pscale()
    - pscale() --> Get reference to pscale.    		 - source code - -
    - -
    -   - - - - - - -
    sratio()
    - sratio() --> Get reference to sigma ratio.    		 - source code - -
    - -
    -   - - - - - - -
    delta1()
    - delta1() --> Get reference to 1/R peak sharpening factor.    		 - source code - -
    - -
    -   - - - - - - -
    delta2()
    - delta2() --> Reference to (1/R^2) sharpening factor.    		 - source code - -
    - -
    -   - - - - - - -
    dscale()
    - dscale() --> Get reference to dscale.    		 - source code - -
    - -
    -   - - - - - - -
    qdamp()
    - qdamp() --> Get reference to qdamp.    		 - source code - -
    - -
    -   - - - - - - -
    qbroad()
    - qbroad() --> Get reference to qbroad.    		 - source code - -
    - -
    -   - - - - - - -
    spdiameter()
    - spdiameter() --> Get reference to spdiameter (phase property).    		 - source code - -
    - -
    -   - - - - - - -
    stepcut()
    - stepcut() --> Get reference to stepcut (phase property).    		 - source code - -
    - -
    -   - - - - - - -
    rcut()
    - rcut() --> Get reference to rcut.    		 - source code - -
    - -
    - - - - - - - - - - - - - - - -
    - - - - - -
    Class Variables[hide private]
    -
    -   - - selalias = {'ALL': -1} -
    -   - - FCON = {'FCOMP': 2, 'FSQR': 3, 'IDENT': 1, 'USER': 0} -
    -   - - Sctp = {'N': 1, 'X': 0} -
    - - - - - - - - - -
    - - - - - -
    Properties[hide private]
    -
    -

    Inherited from object: - __class__ -

    -
    - - - - - - -
    - - - - - -
    Method Details[hide private]
    -
    - -
    - -
    - - -
    -

    _exportAll(self, - namespace) -

    -     		source code  -
    - - 
    -_exportAll(self, namespace) --> Export all 'public' class methods
-    into namespace.
-
-This function allows for a module-level PdfFit object which doesn't have
-to be referenced when calling a method. This function makes old (python)
-scripts compatible with this class. At the top of the script, create a
-pdffit object, and then call this method. Usually, namespace = locals().
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    add_structure(self, - stru) -

    -     		source code  -
    - - 
    -add_structure(stru) --> Add new structure to PdfFit instance.
-
-stru -- instance of Structure class from diffpy.Structure.
-
-No return value.
-Raises pdffit2.structureError when stru contains unknown
-atom species.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    read_struct(self, - struct) -

    -     		source code  -
    - - 
    -read_struct(struct) --> Read structure from file into memory.
-
-struct  -- name of file from which to read structure
-
-Raises:
-    pdffit2.calculationError when a lattice cannot be created from the
-    given structure
-    pdffit2.structureError when a structure file is malformed
-    IOError when the file cannot be read from the disk
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    read_struct_string(self, - struct, - name='') -

    -     		source code  -
    - - 
    -read_struct_string(struct, name = "") --> Read structure from
-a string into memory.
-
-struct  -- string containing the contents of the structure file
-name    -- tag with which to label structure
-
-Raises:
-    pdffit2.calculationError when a lattice cannot be created from the
-    given structure
-    pdffit2.structureError when a structure file is malformed
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    read_data(self, - data, - stype, - qmax, - qdamp) -

    -     		source code  -
    - - 
    -read_data(data, stype, qmax, qdamp) --> Read pdf data from file into
-memory.
-
-data    -- name of file from which to read data
-stype   -- 'X' (xray) or 'N' (neutron)
-qmax    -- Q-value cutoff used in PDF calculation.
-           Use qmax=0 to neglect termination ripples.
-qdamp   -- instrumental Q-resolution factor
-
-Raises: IOError when the file cannot be read from disk
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    read_data_string(self, - data, - stype, - qmax, - qdamp, - name='') -

    -     		source code  -
    - - 
    -read_data_string(data, stype, qmax, qdamp, name = "") --> Read
-pdf data from a string into memory.
-
-data    -- string containing the contents of the data file
-stype   -- 'X' (xray) or 'N' (neutron)
-qmax    -- Q-value cutoff used in PDF calculation.
-           Use qmax=0 to neglect termination ripples.
-qdamp   -- instrumental Q-resolution factor
-name    -- tag with which to label data
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    read_data_lists(self, - stype, - qmax, - qdamp, - r_data, - Gr_data, - dGr_data=None, - name='list') -

    -     		source code  -
    - - 
    -read_data_lists(stype, qmax, qdamp, r_data, Gr_data, dGr_data =
-None, name = "list") --> Read pdf data into memory from lists.
-
-All lists must be of the same length.
-stype       -- 'X' (xray) or 'N' (neutron)
-qmax        -- Q-value cutoff used in PDF calculation.
-               Use qmax=0 to neglect termination ripples.
-qdamp       -- instrumental Q-resolution factor
-r_data      -- list of r-values
-Gr_data     -- list of G(r) values
-dGr_data    -- list of G(r) uncertainty values
-name        -- tag with which to label data
-
-Raises: ValueError when the data lists are of different length
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    pdfrange(self, - iset, - rmin, - rmax) -

    -     		source code  -
    - - 
    -pdfrange(iset, rmin, rmax) --> Set the range of the fit.
-
-iset    -- data set to consider
-rmin    -- minimum r-value of fit
-rmax    -- maximum r-value of fit
-
-Raises: ValueError for bad input values
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    alloc(self, - stype, - qmax, - qdamp, - rmin, - rmax, - bin) -

    -     		source code  -
    - - 
    -alloc(stype, qmax, qdamp, rmin, rmax, bin) --> Allocate space
-for a PDF calculation.
-
-The structure from which to calculate the PDF must first be imported
-with the read_struct() or read_struct_string() method.
-stype   -- 'X' (xray) or 'N' (neutron)
-qmax    -- Q-value cutoff used in PDF calculation.
-           Use qmax=0 to neglect termination ripples.
-qdamp   -- instrumental Q-resolution factor
-rmin    -- minimum r-value of calculation
-rmax    -- maximum r-value of calculation
-bin     -- number of data points in calculation
-
-Raises:
-    ValueError for bad input values
-    pdffit.unassignedError when no structure has been loaded
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    calc(self) -

    -     		source code  -
    - - 
    -calc() --> Calculate the PDF of the imported structure.
-
-Space for the calculation must first be allocated with the alloc()
-method.
-
-Raises:
-    pdffit2.calculationError when allocated space cannot
-    accomodate calculation
-    pdffit.unassignedError when space for calculation has not been
-    allocated
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    refine(self, - toler=1e-08) -

    -     		source code  -
    - - 
    -refine(toler = 0.00000001) --> Fit the theory to the imported data.
-
-toler   --  tolerance of the fit
-
-Raises:
-    pdffit2.calculationError when the model pdf cannot be calculated
-    pdffit2.constraintError when refinement fails due to bad
-    constraint
-    pdffit2.unassigedError when a constraint used but never initialized
-    using setpar()
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    refine_step(self, - toler=1e-08) -

    -     		source code  -
    - - 
    -refine_step(toler = 0.00000001) --> Run a single step of the fit.
-
-toler   --  tolerance of the fit
-
-Raises:
-    pdffit2.calculationError when the model pdf cannot be calculated
-    pdffit2.constraintError when refinement fails due to bad
-    constraint
-    pdffit2.unassigedError when a constraint used but never initialized
-    using setpar()
-
-Returns: 1 (0) if refinement is (is not) finished
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    save_pdf(self, - iset, - fname) -

    -     		source code  -
    - - 
    -save_pdf(iset, fname) --> Save calculated or fitted PDF to file.
-
-iset    -- data set to save
-
-Raises:
-    IOError if file cannot be saved
-    pdffit2.unassignedError if the data set is undefined
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    save_pdf_string(self, - iset) -

    -     		source code  -
    - - 
    -save_pdf_string(iset) --> Save calculated or fitted PDF to string.
-
-iset    -- data set to save
-
-Raises:
-    pdffit2.unassignedError if the data set is undefined
-
-Returns: string containing contents of save file
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    save_dif(self, - iset, - fname) -

    -     		source code  -
    - - 
    -save_dif(iset, fname) --> Save data and fitted PDF difference to
-file.
-
-iset    -- data set to save
-
-Raises:
-    IOError if file cannot be saved
-    pdffit2.unassignedError if the data set is undefined
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    save_dif_string(self, - iset) -

    -     		source code  -
    - - 
    -save_dif_string(iset) --> Save data and fitted PDF difference to
-string.
-
-iset    -- data set to save
-
-Raises:
-    pdffit2.unassignedError if the data set is undefined
-
-Returns: string containing contents of save file
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    save_res(self, - fname) -

    -     		source code  -
    - - 
    -save_res(fname) --> Save fit-specific data to file.
-
-Raises:
-    IOError if file cannot be saved
-    pdffit2.unassignedError if there is no refinement data to save
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    save_res_string(self) -

    -     		source code  -
    - - 
    -save_res_string() --> Save fit-specific data to a string.
-
-Raises:
-    pdffit2.unassignedError if there is no refinement data to save
-
-Returns: string containing contents of save file
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    get_structure(self, - ip) -

    -     		source code  -
    - - 
    -get_structure(ip) --> Get a copy of specified phase data.
-
-ip -- index of existing PdfFit phase starting from 1
-
-Return Structure object from diffpy.Structure.
-Raise pdffit2.unassignedError if phase ip is undefined.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    save_struct(self, - ip, - fname) -

    -     		source code  -
    - - 
    -save_struct(ip, fname) --> Save structure resulting from fit
-to file.
-
-ip    -- phase to save
-
-Raises:
-    IOError if file cannot be saved
-    pdffit2.unassignedError if the data set is undefined
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    save_struct_string(self, - ip) -

    -     		source code  -
    - - 
    -save_struct(ip) --> Save structure resulting from fit to string.
-
-ip    -- phase to save
-
-Raises:
-    pdffit2.unassignedError if phase ip is undefined.
-
-Returns: string containing contents of save file
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    show_struct(self, - ip) -

    -     		source code  -
    - - 
    -show_struct(ip) --> Print structure resulting from fit.
-
-ip    -- phase to display
-
-Raises: pdffit2.unassignedError if the phase is undefined
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    constrain(self, - var, - par, - fcon=None) -

    -     		source code  -
    - - 
    -constrain(var, par[, fcon]) --> Constrain a variable to a parameter.
-
-A variable can be constrained to a number or equation string.
-var     -- variable to constrain, such as x(1)
-par     -- parameter which to constrain the variable. This can be
-           an integer or an equation string containing a reference
-           to another parameter. Equation strings use standard c++
-           syntax. The value of a constrained parameter is accessed
-           as @p in an equation string, where p is the parameter.
-           e.g.
-           >>>  constrain(x(1), 1)
-           >>>  constrain(x(2), "0.5+@1")
-fcon    -- 'USER', 'IDENT', 'FCOMP', or 'FSQR'
-           this is an optional parameter, and I don't know how it is
-           used!
-
-Raises:
-    pdffit2.constraintError if a constraint is bad
-    pdffit2.unassignedError if variable does not yet exist
-    ValueError if variable index does not exist (e.g. lat(7))
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    setpar(self, - par, - val) -

    -     		source code  -
    - - 
    -setpar(par, val) --> Set value of constrained parameter.
-
-val     --  Either a numerical value or a reference to a variable
-
-Raises:
-    pdffit2.unassignedError when variable is yet to be assigned
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    setvar(self, - var, - val) -

    -     		source code  -
    - - 
    -setvar(var, val) --> Set the value of a variable.
-
-Raises:
-    pdffit2.unassignedError if variable does not yet exist
-    ValueError if variable index does not exist (e.g. lat(7))
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    getvar(self, - var) -

    -     		source code  -
    - - 
    -getvar(var) --> Get stored value of a variable.
-
-Raises:
-    pdffit2.unassignedError if variable does not yet exist
-    ValueError if variable index does not exist (e.g. lat(7))
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    getrw(self) -

    -     		source code  -
    - - 
    -getrw() --> Get normalized total error of the fit rw.
-
-getrw calculates total fit error summed for all datasets in the fit.
-
-Return float.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    getcrw(self) -

    -     		source code  -
    - - 
    -getcrw() --> Get cumulative Rw for the current dataset.
-
-Cumulative Rw is a list of Rw partial sums cost values evaluated against
-observed PDF data in the error sums evaluated against
-the r-points in the fit.
-
-Raises: pdffit2.unassignedError if no data exists
-
-Returns: List of crw points, equidistant in r or empty list
-if the refine function has not been called yet.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    getR(self) -

    -     		source code  -
    - - 
    -getR() --> Get r-points used in the fit.
-
-This function should only be called after data has been loaded or
-calculated. Before a refinement, the list of r-points will reflect the
-data. Afterwords, they will reflect the fit range.
-
-Raises: pdffit2.unassignedError if no data exists
-
-Returns: List of equidistance r-points used in fit.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    getpdf_fit(self) -

    -     		source code  -
    - - 
    -getpdf_fit() --> Get fitted PDF.
-
-This function should only be called after a refinement or refinement
-step has been done.
-
-Raises: pdffit2.unassignedError if no data exists
-
-Returns: List of fitted points, equidistant in r.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    getpdf_obs(self) -

    -     		source code  -
    - - 
    -getpdf_obs() --> Get observed PDF.
-
-This function should only be called after data has been loaded or
-calculated. Before a refinement, the list of r-points will reflect the
-data. Afterwords, they will reflect the fit range.
-
-Raises: pdffit2.unassignedError if no data exists
-
-Returns: List of data points, equidistant in r.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    getpdf_diff(self) -

    -     		source code  -
    - - 
    -Obtain difference between observed and fitted PDF.
-
-This function should only be called after data has been loaded or
-calculated. Before a refinement, the list of r-points will reflect the
-data. Afterwords, they will reflect the fit range.
-
-Raises: pdffit2.unassignedError if no data exists
-
-Returns: List of data points, equidistant in r.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    get_atoms(self, - ip=None) -

    -     		source code  -
    - - 
    -get_atoms() --> Get element symbols of all atoms in the structure.
-
-ip -- index of phase to get the elements from (starting from 1)
-      when ip is not given, use current phase
-
-This function should only be called after a structure has been loaded.
-
-Raises: pdffit2.unassignedError if no structure exists
-
-Returns: List of atom names in structure.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    get_atom_types(self, - ip=None) -

    -     		source code  -
    - - 
    -get_atom_types() --> Ordered unique element symbols in the structure.
-
-ip -- index of phase to get the elements from (starting from 1)
-      when ip is not given, use current phase
-
-This function should only be called after a structure has been loaded.
-
-Raises:
-    pdffit2.unassignedError if no structure exists
-
-Returns: List of unique atom symbols as they occur in structure.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    getpar(self, - par) -

    -     		source code  -
    - - 
    -getpar(par) --> Get value of parameter.
-
-Raises: ValueError if parameter does not exists
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    fixpar(self, - par) -

    -     		source code  -
    - - 
    -fixpar(par) --> Fix a parameter.
-
-Fixed parameters are not fitted in a refinement. Passed parameter
-can be 'ALL', in which case all parameters are fixed.
-
-Raises: pdffit.unassignedError when parameter has not been assigned
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    freepar(self, - par) -

    -     		source code  -
    - - 
    -freepar(par) --> Free a parameter.
-
-Freed parameters are fitted in a refinement. Passed parameter
-can be 'ALL', in which case all parameters are freed.
-
-Raises: pdffit.unassignedError when parameter has not been assigned
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    setphase(self, - ip) -

    -     		source code  -
    - - 
    -setphase(ip) --> Switch to phase ip.
-
-ip  -- index of the phase starting at 1.
-
-All parameters assigned after this method is called refer only to the
-current phase.
-
-Raises: pdffit.unassignedError when phase does not exist
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    setdata(self, - iset) -

    -     		source code  -
    - - 
    -setdata(iset) --> Set the data set in focus.
-
-iset -- integer index of data set starting at 1.
-
-Raises: pdffit.unassignedError when data set does not exist
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    psel(self, - ip) -

    -     		source code  -
    - - 
    -psel(ip) --> Include phase ip in calculation of total PDF
-
-psel('ALL')     selects all phases for PDF calculation.
-
-Raises: pdffit2.unassignedError if selected phase does not exist
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    pdesel(self, - ip) -

    -     		source code  -
    - - 
    -pdesel(ip) --> Exclude phase ip from calculation of total PDF.
-
-pdesel('ALL')   excludes all phases from PDF calculation.
-
-Raises: pdffit2.unassignedError if selected phase does not exist
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    selectAtomType(self, - ip, - ijchar, - symbol, - flag) -

    -     		source code  -
    - - 
    -Configure partial PDF - mark the specified atom type in phase ip
-as included or excluded as a first or second in pair for distance
-evaluation.
-
-ip      -- phase index starting at 1
-ijchar  -- 'i' or 'j' for first or second in pair
-symbol  -- element symbol
-flag    -- bool flag, True for selection, False for exclusion
-
-Raises:
-    pdffit2.unassignedError if selected phase does not exist
-    ValueError for invalid value of ijchar
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    selectAtomIndex(self, - ip, - ijchar, - aidx, - flag) -

    -     		source code  -
    - - 
    -Configure partial PDF - mark the atom of given index in phase ip
-as included or excluded as a first or second in pair for distance
-evaluation.
-
-ip      -- phase index starting at 1
-ijchar  -- 'i' or 'j' for first or second in pair
-aidx    -- integer index of atom starting at 1
-flag    -- bool flag, True for selection, False for exclusion
-
-Raises:
-    pdffit2.unassignedError if selected phase does not exist
-    ValueError if atom index or ijchar are invalid
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    selectAll(self, - ip, - ijchar) -

    -     		source code  -
    - - 
    -Configure partial PDF - include all atoms of phase ip as first or
-second element in pair for distance evaluation.
-
-ip      -- phase index starting at 1
-ijchar  -- 'i' or 'j' for first or second in pair
-
-Raises:
-    pdffit2.unassignedError if selected phase does not exist
-    ValueError if ijchar is invalid
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    selectNone(self, - ip, - ijchar) -

    -     		source code  -
    - - 
    -Configure partial PDF - exclude all atoms of phase ip from first
-or second element of pair distance evaluation.
-
-ip      -- phase index starting at 1
-ijchar  -- 'i' or 'j' for first or second in pair
-
-Raises:
-    pdffit2.unassignedError if selected phase does not exist
-    ValueError if ijchar is invalid
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    bang(self, - i, - j, - k) -

    -     		source code  -
    - - 
    -bang(i, j, k) --> Show bond angle defined by atoms i, j, k.
-
-No return value.  Use bond_angle() to get the result.
-
-Raises: ValueError if selected atom(s) does not exist
-        pdffit.unassignedError when no structure has been loaded
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    bond_angle(self, - i, - j, - k) -

    -     		source code  -
    - - 
    -bond_angle(i, j, k) --> bond angle defined by atoms i, j, k.
-Angle is calculated using the shortest ji and jk lengths with
-respect to periodic boundary conditions.
-
-i, j, k  -- atom indices starting at 1
-
-Return a tuple of (angle, angle_error), both values are in degrees.
-
-Raises: ValueError if selected atom(s) does not exist
-        pdffit.unassignedError when no structure has been loaded
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    blen(self, - *args) -

    -     		source code  -
    - - 
    -blen(i, j) --> Show bond length defined by atoms i and j.
-
-i      -- index of the first atom starting at 1
-j      -- index of the second atom starting at 1
-
-No return value.  Use bond_length_atoms() to retrieve result.
-
-Second form:
-
-blen(a1, a2, lb, ub) --> Show sorted lengths of all a1-a2 bonds.
-
-a1     -- symbol of the first element in pair or "ALL"
-a2     -- symbol of the second element in pair or "ALL"
-lb     -- lower bond length boundary
-ub     -- upper bond length boundary
-
-No return value.  Use bond_length_types() to retrieve results.
-
-Raises: ValueError if selected atom(s) does not exist
-        pdffit.unassignedError when no structure has been loaded
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    bond_length_atoms(self, - i, - j) -

    -     		source code  -
    - - 
    -bond_length_atoms(i, j) --> shortest distance between atoms i, j.
-Periodic boundary conditions are applied to find the shortest bond.
-
-i   -- index of the first atom starting at 1
-j   -- index of the second atom starting at 1
-
-Return a tuple of (distance, distance_error).
-
-Raises: ValueError if selected atom(s) does not exist
-        pdffit.unassignedError when no structure has been loaded.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    bond_length_types(self, - a1, - a2, - lb, - ub) -

    -     		source code  -
    - - 
    -bond_length_types(a1, a2, lb, ub) --> get all a1-a2 distances.
-
-a1     -- symbol of the first element in pair or "ALL"
-a2     -- symbol of the second element in pair or "ALL"
-lb     -- lower bond length boundary
-ub     -- upper bond length boundary
-
-Return a dictionary of distance data containing
-
-dij  : list of bond lenghts within given bounds
-ddij : list of bond legnth standard deviations
-ij0  : pairs of atom indices starting from 0
-ij1  : pairs of atom indices starting from 1
-
-Raises: ValueError if selected atom(s) does not exist
-        pdffit.unassignedError when no structure has been loaded.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    show_scat(self, - stype) -

    -     		source code  -
    - - 
    -show_scat(stype) --> Print scattering length for all atoms in
-the current phase.
-
-stype -- 'X' (xray) or 'N' (neutron).
-
-Raises: pdffit2.unassignedError if no phase exists
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    get_scat_string(self, - stype) -

    -     		source code  -
    - - 
    -get_scat_string(stype) --> Get string with scattering factors
-of all atoms in the current phase.
-
-stype -- 'X' (xray) or 'N' (neutron).
-
-Raises:
-    pdffit2.unassignedError if no phase exists
-
-Returns: string with all scattering factors.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    get_scat(self, - stype, - element) -

    -     		source code  -
    - - 
    -get_scat(stype, element) --> Get active scattering factor for
-given element.  If scattering factor has been changed using
-set_scat the result may depend on the active phase.  When no
-phase has been loaded, return the standard value.
-
-stype   -- 'X' (xray) or 'N' (neutron).
-element -- case-insensitive element symbol such as "Na" or "CL"
-
-Return float.
-
-Raises:
-    ValueError if element is not known.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    set_scat(self, - stype, - element, - value) -

    -     		source code  -
    - - 
    -set_scat(stype, element, value) --> Set custom scattering factor
-for given element.  The new scattering factor applies only for the
-current phase, in other phases it keeps its default value.
-
-stype   -- 'X' (xray) or 'N' (neutron).
-element -- case-insensitive element symbol such as "Na" or "CL"
-value   -- new value of scattering factor
-
-No return value.
-
-Raises:
-    pdffit2.unassignedError if no phase exists.
-    ValueError if element is not known.
-
-See also reset_scat, get_scat.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    reset_scat(self, - element) -

    -     		source code  -
    - - 
    -reset_scat(stype, element) --> Reset scattering factors for
-given element to their standard values.  The reset_scat applies
-only for the current phase.
-
-element -- case-insensitive element symbol such as "Na" or "CL"
-Raises:
-    pdffit2.unassignedError if no phase exists
-    ValueError if element is not known.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    num_atoms(self) -

    -     		source code  -
    - - 
    -num_atoms() --> Get number of atoms in current phase.
-
-Raises: pdffit2.unassignedError if no atoms exist
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    num_phases(self) -

    -     		source code  -
    - - 
    -num_phases() --> Number of phases loaded in PdfFit instance.
-
-Use setphase to bring a specific phase in focus.
-
-Return integer.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    num_datasets(self) -

    -     		source code  -
    - - 
    -num_datasets() --> Number of datasets loaded in PdfFit instance.
-
-Use setdata to bring a specific dataset in focus.
-
-Return integer.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    phase_fractions(self) -

    -     		source code  -
    - - 
    -phase_fractions() --> relative phase fractions for current dataset.
-Convert phase scale factors to relative phase fractions given the
-scattering type of current dataset.
-
-Return a dictionary of phase fractions with following keys:
-
-"atom"    -- list of fractions normalized to atom count
-"stdatom" -- errors of atom count fractions
-"cell"    -- list of fractions normalized to unit cell count
-"stdcell" -- errors of unit cell count fractions
-"mass"    -- list of relative weight fractions
-"stdmass" -- errors of relative weight fractions
-
-Raises: pdffit2.unassignedError if no dataset exists.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    lat(n) -
    Static Method -

    -     		source code  -
    - - 
    -lat(n) --> Get reference to lattice variable n.
-
-n can be an integer or a string representing the lattice variable.
-1 <==> 'a'
-2 <==> 'b'
-3 <==> 'c'
-4 <==> 'alpha'
-5 <==> 'beta'
-6 <==> 'gamma'
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    u11(i) -
    Static Method -

    -     		source code  -
    - - 
    -u11(i) --> Get reference to U(1,1) for atom i.
-
-U is the anisotropic thermal factor tensor.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    u22(i) -
    Static Method -

    -     		source code  -
    - - 
    -u22(i) --> Get reference to U(2,2) for atom i.
-
-U is the anisotropic thermal factor tensor.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    u33(i) -
    Static Method -

    -     		source code  -
    - - 
    -u33(i) --> Get reference to U(3,3) for atom i.
-
-U is the anisotropic thermal factor tensor.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    u12(i) -
    Static Method -

    -     		source code  -
    - - 
    -u12(i) --> Get reference to U(1,2) for atom i.
-
-U is the anisotropic thermal factor tensor.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    u13(i) -
    Static Method -

    -     		source code  -
    - - 
    -u13(i) --> Get reference to U(1,3) for atom i.
-
-U is the anisotropic thermal factor tensor.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    u23(i) -
    Static Method -

    -     		source code  -
    - - 
    -u23(i) --> Get reference to U(2,3) for atom i.
-
-U is the anisotropic thermal factor tensor.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    pscale() -
    Static Method -

    -     		source code  -
    - - 
    -pscale() --> Get reference to pscale.
-
-pscale is the fraction of the total structure that the current phase
-represents.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    sratio() -
    Static Method -

    -     		source code  -
    - - 
    -sratio() --> Get reference to sigma ratio.
-
-The sigma ratio determines the reduction in the Debye-Waller factor for
-distances below rcut.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    delta2() -
    Static Method -

    -     		source code  -
    - - 
    -delta2() --> Reference to (1/R^2) sharpening factor.
-The phenomenological correlation constant in the Debye-Waller factor.
-The (1/R^2) peak sharpening factor.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    dscale() -
    Static Method -

    -     		source code  -
    - - 
    -dscale() --> Get reference to dscale.
-
-The data scale factor.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    qdamp() -
    Static Method -

    -     		source code  -
    - - 
    -qdamp() --> Get reference to qdamp.
-
-Qdamp controls PDF damping due to instrument Q-resolution.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    qbroad() -
    Static Method -

    -     		source code  -
    - - 
    -qbroad() --> Get reference to qbroad.
-
-Quadratic peak broadening factor.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    spdiameter() -
    Static Method -

    -     		source code  -
    - - 
    -spdiameter() --> Get reference to spdiameter (phase property).
-
-Diameter value for the spherical particle PDF correction.
-Spherical envelope is not applied when spdiameter equals 0.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    stepcut() -
    Static Method -

    -     		source code  -
    - - 
    -stepcut() --> Get reference to stepcut (phase property).
-
-stepcut is cutoff radius for empirical step-function PDF envelope.
-stepcut can be used to approximate loss of pair correlations
-in amorphous phase.  stepcut cannot be refined.
-
-Step cutoff is not applied when stepcut equals 0.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    rcut() -
    Static Method -

    -     		source code  -
    - - 
    -rcut() --> Get reference to rcut.
-
-rcut is the value of r below which peak sharpening, defined by
-the sigma ratio (sratio), applies.  rcut cannot be refined.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    __init__(self) -
    (Constructor) -

    -     		source code  -
    - - 
    -x.__init__(...) initializes x; see help(type(x)) for signature
-
-
    -
    -
    Overrides: - object.__init__ -
    (inherited documentation)
    - -
    -
    -
    - -
    - -
    - - -
    -

    __getRef(self, - var_string) -

    -     		source code  -
    - - 
    -Return the actual reference to the variable in the var_string.
-
-This function must be called before trying to actually reference an
-internal variable. See the constrain method for an example.
-
-Raises:
-    pdffit2.unassignedError if variable is not yet assigned
-    ValueError if variable index does not exist (e.g. lat(7))
-
-
    -
    -
    -
    -
    -
    - - - - - - - - - - - - - - - - - - -
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    - - - - - -
    - - Package diffpy :: - Package pdffit2 :: - Module pdffit2 - - - - - - -
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    -
    - -

    Module pdffit2

    -
    -pdffit2 - interface to the core calculation routines in C++
-
-
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    - - - - - -
    Functions[hide private]
    -
    -   - - - - - - -
    alloc(...)
    - Allocate space for pdf data    		 - - -
    - -
    -   - - - - - - -
    bond_angle(...)
    - Return bond angle between three atoms.    		 - - -
    - -
    -   - - - - - - -
    bond_length_atoms(...)
    - Return a tuple of (dij, ddij) for distance between two atoms -and its standard deviation.    		 - - -
    - -
    -   - - - - - - -
    bond_length_types(...)
    - Return bond lengths between two elements within given bounds    		 - - -
    - -
    -   - - - - - - -
    calc(...)
    - calculate pdf from data    		 - - -
    - -
    -   - - - - - - -
    constrain_int(...)
    - Constrain refined variable to integer.    		 - - -
    - -
    -   - - - - - - -
    constrain_str(...)
    - Constrain refined variable to string.    		 - - -
    - -
    -   - - - - - - -
    copyright(...) - - -
    - -
    -   - - - - - - -
    create(...) - - -
    - -
    -   - - - - - - -
    delta1(...)
    - Pointer to variable delta1.    		 - - -
    - -
    -   - - - - - - -
    delta2(...)
    - Pointer to variable delta2.    		 - - -
    - -
    -   - - - - - - -
    dscale(...)
    - Pointer to variable dscale.    		 - - -
    - -
    -   - - - - - - -
    fixpar(...)
    - Fix value of parameter.    		 - - -
    - -
    -   - - - - - - -
    freepar(...)
    - Free parameter.    		 - - -
    - -
    -   - - - - - - -
    getR(...)
    - Get list of r-values for plotting.    		 - - -
    - -
    -   - - - - - - -
    get_atom_types(...)
    - Get ordered unique symbols of atoms in the phase.    		 - - -
    - -
    -   - - - - - - -
    get_atoms(...)
    - Get element symbols of atoms in the phase.    		 - - -
    - -
    -   - - - - - - -
    get_scat(...)
    - Return scattering factor for given element.    		 - - -
    - -
    -   - - - - - - -
    get_scat_string(...)
    - Return string with scatter details.    		 - - -
    - -
    -   - - - - - - -
    getcrw(...)
    - Get cumulative Rw for the current dataset.    		 - - -
    - -
    -   - - - - - - -
    getpar(...)
    - Get value of parameter    		 - - -
    - -
    -   - - - - - - -
    getpdf_diff(...)
    - Get list of differences between observed and fitted PDF points.    		 - - -
    - -
    -   - - - - - - -
    getpdf_fit(...)
    - Get list of calculated pdf points.    		 - - -
    - -
    -   - - - - - - -
    getpdf_obs(...)
    - Get list of observed (theory) pdf points.    		 - - -
    - -
    -   - - - - - - -
    getrw(...)
    - Get rw of fit.    		 - - -
    - -
    -   - - - - - - -
    getvar(...)
    - Get variable value.    		 - - -
    - -
    -   - - - - - - -
    is_element(...)
    - Check if element or isotope is defined in the built-in periodic table.    		 - - -
    - -
    -   - - - - - - -
    lat(...)
    - Pointer to refinable variable lat.    		 - - -
    - -
    -   - - - - - - -
    num_atoms(...)
    - Get the number of atoms in the current phase.    		 - - -
    - -
    -   - - - - - - -
    num_datasets(...)
    - Get the number of loaded datasets.    		 - - -
    - -
    -   - - - - - - -
    num_phases(...)
    - Get the number of loaded phases.    		 - - -
    - -
    -   - - - - - - -
    occ(...)
    - Pointer to refinable variable occ.    		 - - -
    - -
    -   - - - - - - -
    pdesel(...)
    - Deselect phase in focus.    		 - - -
    - -
    -   - - - - - - -
    pdfrange(...)
    - Set r-range of pdf.    		 - - -
    - -
    -   - - - - - - -
    phase_fractions(...)
    - Return relative phase fractions for current dataset scattering type    		 - - -
    - -
    -   - - - - - - -
    pscale(...)
    - Pointer to variable pscale.    		 - - -
    - -
    -   - - - - - - -
    psel(...)
    - Select phase in focus.    		 - - -
    - -
    -   - - - - - - -
    qbroad(...)
    - Pointer to variable qbroad.    		 - - -
    - -
    -   - - - - - - -
    qdamp(...)
    - Pointer to variable qdamp.    		 - - -
    - -
    -   - - - - - - -
    rcut(...)
    - Pointer to nonvariable rcut.    		 - - -
    - -
    -   - - - - - - -
    read_data(...)
    - Read data file into memory.    		 - - -
    - -
    -   - - - - - - -
    read_data_arrays(...)
    - Read data from arrays into memory.    		 - - -
    - -
    -   - - - - - - -
    read_data_string(...)
    - Read data from string into memory.    		 - - -
    - -
    -   - - - - - - -
    read_struct(...)
    - Read structure file into memory.    		 - - -
    - -
    -   - - - - - - -
    read_struct_string(...)
    - Read structure file into memory from a c-string.    		 - - -
    - -
    -   - - - - - - -
    redirect_stdout(...)
    - Redirect engine output to a file-like object.    		 - - -
    - -
    -   - - - - - - -
    refine(...)
    - refine model to pdf data    		 - - -
    - -
    -   - - - - - - -
    refine_step(...)
    - Make one step in the refinement process.    		 - - -
    - -
    -   - - - - - - -
    reset(...)
    - reset pdf data    		 - - -
    - -
    -   - - - - - - -
    reset_scat(...)
    - Reset scattering factor for given element.    		 - - -
    - -
    -   - - - - - - -
    save_dif(...)
    - Save pdf difference to file    		 - - -
    - -
    -   - - - - - - -
    save_pdf(...)
    - Save calculated pdf to file    		 - - -
    - -
    -   - - - - - - -
    save_res(...)
    - Save residual to file    		 - - -
    - -
    -   - - - - - - -
    save_struct(...)
    - Save refined structure to file    		 - - -
    - -
    -   - - - - - - -
    selectAll(...)
    - Include all atoms in 'i' or 'j' pair of PDF calculation.    		 - - -
    - -
    -   - - - - - - -
    selectAtomIndex(...)
    - Include atom of given index in 'i' or 'j' pair of PDF calculation.    		 - - -
    - -
    -   - - - - - - -
    selectAtomType(...)
    - Include element in 'i' or 'j' pair of PDF calculation.    		 - - -
    - -
    -   - - - - - - -
    selectNone(...)
    - Include all atoms in 'i' or 'j' pair of PDF calculation.    		 - - -
    - -
    -   - - - - - - -
    set_scat(...)
    - Set custom scattering factor for given element.    		 - - -
    - -
    -   - - - - - - -
    setdata(...)
    - Set data in focus.    		 - - -
    - -
    -   - - - - - - -
    setpar_RV(...)
    - Set parameter value via refined variable.    		 - - -
    - -
    -   - - - - - - -
    setpar_dbl(...)
    - Set parameter value.    		 - - -
    - -
    -   - - - - - - -
    setphase(...)
    - Set phase in focus.    		 - - -
    - -
    -   - - - - - - -
    setvar(...)
    - Set variable to value.    		 - - -
    - -
    -   - - - - - - -
    show_struct(...)
    - Show structure.    		 - - -
    - -
    -   - - - - - - -
    spdiameter(...)
    - Pointer to variable spdiameter.    		 - - -
    - -
    -   - - - - - - -
    sratio(...)
    - Pointer to variable sratio.    		 - - -
    - -
    -   - - - - - - -
    stepcut(...)
    - Pointer to nonvariable stepcut.    		 - - -
    - -
    -   - - - - - - -
    u11(...)
    - Pointer to refinable variable u11.    		 - - -
    - -
    -   - - - - - - -
    u12(...)
    - Pointer to refinable variable u12.    		 - - -
    - -
    -   - - - - - - -
    u13(...)
    - Pointer to refinable variable u13.    		 - - -
    - -
    -   - - - - - - -
    u22(...)
    - Pointer to refinable variable u22.    		 - - -
    - -
    -   - - - - - - -
    u23(...)
    - Pointer to refinable variable u23.    		 - - -
    - -
    -   - - - - - - -
    u33(...)
    - Pointer to refinable variable u33.    		 - - -
    - -
    -   - - - - - - -
    x(...)
    - Pointer to refinable variable x.    		 - - -
    - -
    -   - - - - - - -
    y(...)
    - Pointer to refinable variable y.    		 - - -
    - -
    -   - - - - - - -
    z(...)
    - Pointer to refinable variable z.    		 - - -
    - -
    - - - - - - - - - -
    - - - - - -
    Variables[hide private]
    -
    -   - - __package__ = None -
    -

    Imports: - RuntimeException, - calculationError, - constraintError, - dataError, - structureError, - unassignedError -


    - - - - - - -
    - - - - - -
    Function Details[hide private]
    -
    - -
    - -
    - - -
    -

    bond_length_types(...) -

    -     		  -
    - - 
    -Return bond lengths between two elements within given bounds
-
-a1    -- symbol of the first element in pair or 'ALL'
-a2    -- symbol of the second element in pair or 'ALL'
-lb    -- lower bound for bond lengths
-ub    -- upper bound for bond lengths
-
-Return a dictionary of distance data containing:
-
-dij  : list of bond lenghts within given bounds
-ddij : list of bond legnth standard deviations
-ij0  : list of tupled pairs of indices starting at 0
-ij1  : list of tupled pairs of indices starting at 1
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    phase_fractions(...) -

    -     		  -
    - - 
    -Return relative phase fractions for current dataset scattering type
-
-Return a dictionary of relative phase fractions:
-
-atom    -- list of fractions normalized to atom count
-stdatom -- errors of atom count fractions
-cell    -- list of fractions normalized to unit cell count
-stdcell -- errors of unit cell count fractions
-mass    -- list of relative weight fractions
-stdmass -- errors of relative weight fractions
-
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    Package tests

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    -
    -Unit tests for the diffpy.pdffit2 package.
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    - - - - - -
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    Functions[hide private]
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    -   - - - - - - -
    testsuite()
    - Build a unit tests suite for the diffpy.pdffit2 package.    		 - source code - -
    - -
    -   - - - - - - -
    test()
    - Execute all unit tests for the diffpy.pdffit2 package.    		 - source code - -
    - -
    -   - - - - - - -
    testdeps()
    - Execute all unit tests for diffpy.pdffit2 and its dependencies.    		 - source code - -
    - -
    - - - - - - - - - -
    - - - - - -
    Variables[hide private]
    -
    -   - - __package__ = None -
    - - - - - - -
    - - - - - -
    Function Details[hide private]
    -
    - -
    - -
    - - -
    -

    testsuite() -

    -     		source code  -
    - - 
    -Build a unit tests suite for the diffpy.pdffit2 package.
-
-Return a unittest.TestSuite object.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    test() -

    -     		source code  -
    - - 
    -Execute all unit tests for the diffpy.pdffit2 package.
-Return a unittest TestResult object.
-
-
    -
    -
    -
    -
    - -
    - -
    - - -
    -

    testdeps() -

    -     		source code  -
    - - 
    -Execute all unit tests for diffpy.pdffit2 and its dependencies.
-
-Return a unittest TestResult object.
-
-
    -
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    - - - - diff --git a/static_root/doc/pdffit2/diffpy.pdffit2.tests-pysrc.html b/static_root/doc/pdffit2/diffpy.pdffit2.tests-pysrc.html deleted file mode 100644 index e8f6ca78..00000000 --- a/static_root/doc/pdffit2/diffpy.pdffit2.tests-pysrc.html +++ /dev/null @@ -1,194 +0,0 @@ - - - - - diffpy.pdffit2.tests - - - - - - - - - - - - - - - - - - - - - - - -
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    Source Code for Package diffpy.pdffit2.tests

    -
    - 1  #!/usr/bin/env python 
- 2  ############################################################################## 
- 3  # 
- 4  # diffpy.pdffit2    by DANSE Diffraction group 
- 5  #                   Simon J. L. Billinge 
- 6  #                   (c) 2012 Trustees of the Columbia University 
- 7  #                   in the City of New York.  All rights reserved. 
- 8  # 
- 9  # File coded by:    Pavol Juhas 
-10  # 
-11  # See AUTHORS.txt for a list of people who contributed. 
-12  # See LICENSE.txt for license information. 
-13  # 
-14  ############################################################################## 
-15   
-16  """Unit tests for the diffpy.pdffit2 package. 
-17  """ 
-18   
-19   
-
    20 -def testsuite(): 
-
    21      '''Build a unit tests suite for the diffpy.pdffit2 package. 
-22   
-23      Return a unittest.TestSuite object. 
-24      ''' 
-25      import unittest 
-26      modulenames = ''' 
-27          diffpy.pdffit2.tests.ExceptionsTest 
-28          diffpy.pdffit2.tests.TestPdfFit 
-29          diffpy.pdffit2.tests.TestPhaseFractions 
-30          diffpy.pdffit2.tests.TestShapeFactors 
-31      '''.split() 
-32      suite = unittest.TestSuite() 
-33      loader = unittest.defaultTestLoader 
-34      mobj = None 
-35      for mname in modulenames: 
-36          exec ('import %s as mobj' % mname) 
-37          suite.addTests(loader.loadTestsFromModule(mobj)) 
-38      return suite 
-
    39   
-40   
-
    41 -def test(): 
-
    42      '''Execute all unit tests for the diffpy.pdffit2 package. 
-43      Return a unittest TestResult object. 
-44      ''' 
-45      import unittest 
-46      suite = testsuite() 
-47      runner = unittest.TextTestRunner() 
-48      result = runner.run(suite) 
-49      return result 
-
    50   
-51   
-
    52 -def testdeps(): 
-
    53      '''Execute all unit tests for diffpy.pdffit2 and its dependencies. 
-54   
-55      Return a unittest TestResult object. 
-56      ''' 
-57      import unittest 
-58      modulenames = ''' 
-59          diffpy.pdffit2.tests 
-60          diffpy.Structure.tests 
-61      '''.split() 
-62      suite = unittest.TestSuite() 
-63      t = None 
-64      for mname in modulenames: 
-65          exec ('from %s import testsuite as t' % mname) 
-66          suite.addTests(t()) 
-67      runner = unittest.TextTestRunner() 
-68      result = runner.run(suite) 
-69      return result 
-
    70   
-71   
-72  # End of file 
-73   
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    - -

    Module ExceptionsTest

    source code

    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    - - - - - -
    Classes[hide private]
    -
    -   - - read_structExceptions -
    -   - - read_dataExceptions -
    -   - - read_data_listsExceptions -
    -   - - pdfrangeExceptions -
    -   - - allocExceptions -
    -   - - calcExceptions -
    -   - - save_pdfExceptions -
    -   - - save_difExceptions -
    -   - - save_resExceptions -
    -   - - save_structExceptions -
    -   - - constrainExceptions -
    -   - - setvarExceptions -
    -   - - getvarExceptions -
    -   - - getRExceptions -
    -   - - getpdf_fitExceptions -
    -   - - getpdf_obsExceptions -
    -   - - getpdf_diffExceptions -
    -   - - get_atomsExceptions -
    -   - - getparExceptions -
    -   - - pselExceptions -
    -   - - pdeselExceptions -
    -   - - selectAtomTypeExceptions -
    -   - - selectAtomIndexExceptions -
    -   - - selectAllExceptions -
    -   - - selectNoneExceptions -
    -   - - bangExceptions -
    -   - - blenExceptions -
    -   - - show_scatExceptions -
    -   - - num_atomsExceptions -
    -   - - fixparExceptions -
    -   - - freeparExceptions -
    -   - - setphaseExceptions -
    -   - - setdataExceptions -
    -   - - getcrwExceptions -
    - - - - - - - - - -
    - - - - - -
    Variables[hide private]
    -
    -   - - __package__ = 'diffpy.pdffit2.tests' -
    -

    Imports: - unittest, - PdfFit, - pdffit2, - datafile -


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    Source Code for Module diffpy.pdffit2.tests.ExceptionsTest

    -
    -  1  #!/usr/bin/env python 
-  2  ############################################################################## 
-  3  # 
-  4  # pdffit2           by DANSE Diffraction group 
-  5  #                   Simon J. L. Billinge 
-  6  #                   (c) 2006 trustees of the Michigan State University. 
-  7  #                   All rights reserved. 
-  8  # 
-  9  # File coded by:    Chris Farrow 
- 10  # 
- 11  # See AUTHORS.txt for a list of people who contributed. 
- 12  # See LICENSE.txt for license information. 
- 13  # 
- 14  ############################################################################## 
- 15   
- 16   
- 17  import unittest 
- 18   
- 19  from diffpy.pdffit2 import PdfFit 
- 20  from diffpy.pdffit2 import pdffit2 
- 21  from pdffit2testutils import datafile 
- 22   
- 23   
-
     24 -class read_structExceptions(unittest.TestCase): 
-
     25   
-
     26 -    def setUp(self): 
-
     27          self.P = PdfFit() 
-
     28   
-
     29 -    def tearDown(self): 
-
     30          del self.P 
-
     31   
-
     32 -    def test_IOError(self): 
-
     33          """raise IOError when structure file does not exist""" 
- 34          self.assertRaises(IOError, self.P.read_struct, "Nofile.stru") 
-
     35   
-
     36 -    def test_structureError(self): 
-
     37          """raise pdffit2.structureError when structure is malformed""" 
- 38          self.assertRaises(pdffit2.structureError, self.P.read_struct, 
- 39                  datafile("badNi.stru")) 
-
     40   
-
     42          """raise pdffit2.structureError when unit cell volume is negative""" 
- 43          #I don't know how to test for this, but it's in the library code 
- 44          self.assertRaises(pdffit2.structureError, 
- 45                  self.P.read_struct, datafile("badNiZeroVolume.stru")) 
-
     46   
-
     47 -class read_dataExceptions(unittest.TestCase): 
-
     48   
-
     49 -    def setUp(self): 
-
     50          self.P = PdfFit() 
-
     51   
-
     52 -    def tearDown(self): 
-
     53          del self.P 
-
     54   
-
     55 -    def test_IOError(self): 
-
     56          """raise IOError when data file does not exist""" 
- 57          self.assertRaises(IOError, self.P.read_data, "Nofile.dat", 
- 58                 'X', 25.0, 0.5) 
-
     59   
-
     60 -    def test_dataError(self): 
-
     61          """raise pdffit2.dataError when data has improper spacing""" 
- 62          self.assertRaises(pdffit2.dataError, self.P.read_data, 
- 63                  datafile("badNi.dat"), 'X', 25.0, 0.5) 
-
     64   
-
     65 -class read_data_listsExceptions(unittest.TestCase): 
-
     66   
-
     67 -    def setUp(self): 
-
     68          self.P = PdfFit() 
- 69          self.r_data = [0.1, 0.2] 
- 70          self.Gr_data = [1, 2, 3] 
- 71          self.qmax = 10 
- 72          self.qdamp = 0.5 
-
     73   
-
     74 -    def tearDown(self): 
-
     75          del self.P 
-
     76   
-
     77 -    def test_ValueError1(self): 
-
     78          """raise ValueError when lists are of different length""" 
- 79          self.assertRaises(ValueError, self.P.read_data_lists, 'X', self.qmax, 
- 80                  self.qdamp, self.r_data, self.Gr_data) 
-
     81   
-
     82 -    def test_ValueError2(self): 
-
     83          """raise ValueError when qmax < 0""" 
- 84          self.assertRaises(ValueError, self.P.read_data_lists, 'X', -self.qmax, 
- 85                  self.qdamp, self.r_data, self.Gr_data) 
-
     86   
-
     87 -    def test_ValueError3(self): 
-
     88          """raise ValueError when qdamp < 0""" 
- 89          self.assertRaises(ValueError, self.P.read_data_lists, 'X', self.qmax, 
- 90                  -self.qdamp, self.r_data, self.Gr_data) 
-
     91   
-
     92 -    def test_dataError(self): 
-
     93          """raise pdffit2.dataError when data has improper spacing""" 
- 94          r_data = [0.1, 0.52, 0.2] 
- 95          self.assertRaises(pdffit2.dataError, self.P.read_data_lists, 'X', self.qmax, 
- 96                  self.qdamp, r_data, self.Gr_data) 
-
     97   
- 98   
-
     99 -class pdfrangeExceptions(unittest.TestCase): 
-
    100   
-
    101 -    def setUp(self): 
-
    102          self.P = PdfFit() 
-103          self.iset = 1 
-104          self.rmin = 4.0 
-105          self.rmax = 10.0 
-
    106   
-
    107 -    def tearDown(self): 
-
    108          del self.P 
-
    109   
-
    110 -    def test_ValueError1(self): 
-
    111          """raise ValueError when iset does not exist""" 
-112          self.assertRaises(ValueError, self.P.pdfrange, self.iset, self.rmin, 
-113                  self.rmax) 
-
    114   
-
    115 -    def test_ValueError2(self): 
-
    116          """raise ValueError when rmax < rmin""" 
-117          self.P.read_data(datafile("Ni.dat"), 'X', 25.0, 0.5) 
-118          self.assertRaises(ValueError, self.P.pdfrange, self.iset, self.rmax, 
-119                  self.rmin) 
-
    120   
-
    121 -    def test_ValueError3(self): 
-
    122          """raise ValueError when range outside of data""" 
-123          self.P.read_data(datafile("Ni.dat"), 'X', 25.0, 0.5) 
-124          self.assertRaises(ValueError, self.P.pdfrange, self.iset, -self.rmin, 
-125                  self.rmax) 
-
    126   
-127   
-
    128 -class allocExceptions(unittest.TestCase): 
-
    129   
-
    130 -    def setUp(self): 
-
    131          self.P = PdfFit() 
-132          self.qmax = 25 
-133          self.qdamp = 0.5 
-134          self.rmin = 4.0 
-135          self.rmax = 10.0 
-136          self.bin = 100 
-
    137   
-
    138 -    def tearDown(self): 
-
    139          del self.P 
-
    140   
-
    141 -    def test_ValueError1(self): 
-
    142          """raise ValueError when qmax < 0""" 
-143          self.P.read_struct(datafile("Ni.stru")) 
-144          self.assertRaises(ValueError, self.P.alloc, 'X', -self.qmax, self.qdamp, 
-145                  self.rmin, self.rmax, self.bin) 
-
    146   
-
    147 -    def test_ValueError2(self): 
-
    148          """raise ValueError when qdamp < 0""" 
-149          self.P.read_struct(datafile("Ni.stru")) 
-150          self.assertRaises(ValueError, self.P.alloc, 'X', self.qmax, -self.qdamp, 
-151                  self.rmin, self.rmax, self.bin) 
-
    152   
-
    153 -    def test_ValueError3(self): 
-
    154          """raise ValueError when rmin < 0""" 
-155          self.P.read_struct(datafile("Ni.stru")) 
-156          self.assertRaises(ValueError, self.P.alloc, 'X', self.qmax, self.qdamp, 
-157                  -self.rmin, self.rmax, self.bin) 
-
    158   
-
    159 -    def test_ValueError4(self): 
-
    160          """raise ValueError when rmax < 0""" 
-161          self.P.read_struct(datafile("Ni.stru")) 
-162          self.assertRaises(ValueError, self.P.alloc, 'X', self.qmax, self.qdamp, 
-163                  self.rmin, -self.rmax, self.bin) 
-
    164   
-
    165 -    def test_ValueError5(self): 
-
    166          """raise ValueError when bin < 0""" 
-167          self.P.read_struct(datafile("Ni.stru")) 
-168          self.assertRaises(ValueError, self.P.alloc, 'X', self.qmax, self.qdamp, 
-169                  self.rmin, self.rmax, -self.bin) 
-
    170   
-
    171 -    def test_ValueError6(self): 
-
    172          """raise ValueError when rmax < rmin""" 
-173          self.P.read_struct(datafile("Ni.stru")) 
-174          self.assertRaises(ValueError, self.P.alloc, 'X', self.qmax, self.qdamp, 
-175                  self.rmax, self.rmin, self.bin) 
-
    176   
-
    177 -    def test_ValueError7(self): 
-
    178          """raise ValueError when qdamp < 0""" 
-179          self.P.read_struct(datafile("Ni.stru")) 
-180          self.assertRaises(ValueError, self.P.alloc, 'X', self.qmax, self.qdamp, 
-181                  self.rmin, self.rmax, -self.bin) 
-
    182   
-183   
-
    184 -class calcExceptions(unittest.TestCase): 
-
    185   
-
    186 -    def setUp(self): 
-
    187          self.P = PdfFit() 
-188          self.P.read_struct(datafile("Ni.stru")) 
-
    189   
-
    190 -    def tearDown(self): 
-
    191          del self.P 
-
    192   
-
    193 -    def test_unassignedError(self): 
-
    194          """raise pdffit2.unassignedError when no space has been allocated""" 
-195          self.assertRaises(pdffit2.unassignedError, self.P.calc) 
-
    196   
-197  # PJ 2006-03-06 
-198  # 
-199  # test_calculationError raised exception, because for Qmax=0.5, rmax would 
-200  # increase to 4010A and this would throw exception when the size of bnd array 
-201  # would exceed MAXBND limit.  However, bnd vector can now grow, thus rmax 
-202  # is not limited and the following test would hang indefinitely. 
-203   
-204  #   def test_calculationError(self): 
-205  #       """raise pdffit2.calculationError when calculation cannot be done""" 
-206  #       self.P.alloc('X', 0.01, 0.5, 2, 10, 100) 
-207  #       self.assertRaises(pdffit2.calculationError, self.P.calc) 
-208   
-209   
-210  #class refineExceptions(unittest.TestCase): 
-211      #I'm not sure how to test these 
-212   
-213  #    def setUp(self): 
-214  #        self.P = PdfFit() 
-215  # 
-216  #    def test_calculationError(self): 
-217  #        """raise pdffit2.calculationError when model pdf can't be calculated""" 
-218  #        #self.assertRaises(pdffit2.calculationError, self.P.calc) 
-219  # 
-220  #    def test_constraintError(self): 
-221  #        """raise pdffit2.constraintError for bad constraint(s)""" 
-222  #        #self.assertRaises(pdffit2.constraintError, self.P.calc) 
-223   
-224   
-225  #class refine_stepExceptions(unittest.TestCase): 
-226      #I'm not sure how to test these 
-227   
-228  #    def setUp(self): 
-229  #        self.P = PdfFit() 
-230  # 
-231  #    def test_calculationError(self): 
-232  #        """raise pdffit2.calculationError when model pdf can't be calculated""" 
-233  #        #self.assertRaises(pdffit2.calculationError, self.P.calc) 
-234  # 
-235  #    def test_constraintError(self): 
-236  #        """raise pdffit2.constraintError for bad constraint(s)""" 
-237  #        #self.assertRaises(pdffit2.constraintError, self.P.calc) 
-238   
-239   
-
    240 -class save_pdfExceptions(unittest.TestCase): 
-
    241   
-
    242 -    def setUp(self): 
-
    243          self.P = PdfFit() 
-244          self.strufile = "temp.pdf" 
-
    245   
-
    246 -    def tearDown(self): 
-
    247          del self.P 
-
    248   
-
    249 -    def test_IOError(self): 
-
    250          """raise IOError when structure cannot be saved""" 
-251          self.P.read_struct(datafile("Ni.stru")) 
-252          self.P.alloc('X', 30.0, 0.05, 2, 10, 100) 
-253          self.P.calc() 
-254          self.assertRaises(IOError, self.P.save_pdf, 1, 
-255                  "nodir183160/"+self.strufile) 
-
    256   
-
    257 -    def test_unassignedError(self): 
-
    258          """raise pdffit2.unassignedError when structure is undefined""" 
-259          self.assertRaises(pdffit2.unassignedError, self.P.save_pdf, 1, 
-260          self.strufile) 
-
    261   
-262   
-
    263 -class save_difExceptions(unittest.TestCase): 
-
    264   
-
    265 -    def setUp(self): 
-
    266          self.P = PdfFit() 
-267          self.strufile = "temp.dif" 
-
    268   
-
    269 -    def tearDown(self): 
-
    270          del self.P 
-
    271   
-
    272 -    def test_IOError(self): 
-
    273          """raise IOError when dif cannot be saved""" 
-274          self.P.read_struct(datafile("Ni.stru")) 
-275          self.P.alloc('X', 30.0, 0.05, 2, 10, 100) 
-276          self.P.calc() 
-277          self.P.read_data(datafile("Ni.dat"), 'X', 25.0, 0.5) 
-278          self.assertRaises(IOError, self.P.save_dif, 1, 
-279                  "nodir183160/"+self.strufile) 
-
    280   
-
    281 -    def test_unassignedError(self): 
-
    282          """raise pdffit2.unassignedError when structure is undefined""" 
-283          self.assertRaises(pdffit2.unassignedError, self.P.save_dif, 1, 
-284          self.strufile) 
-
    285   
-286   
-
    287 -class save_resExceptions(unittest.TestCase): 
-
    288   
-
    289 -    def setUp(self): 
-
    290          self.P = PdfFit() 
-291          self.resfile = "temp.res" 
-
    292   
-
    293 -    def tearDown(self): 
-
    294          del self.P 
-
    295   
-
    296 -    def test_IOError(self): 
-
    297          """raise IOError when residual file cannot be saved""" 
-298          self.P.read_struct(datafile("Ni.stru")) 
-299          self.P.read_data(datafile("Ni.dat"), 'X', 30.0, 0.0) 
-300          self.P.constrain(self.P.lat(1), 1) 
-301          self.P.setpar(1, 3.0) 
-302          self.P.pdfrange(1,2.0,10.0) 
-303          self.P.refine_step() 
-304          self.assertRaises(IOError, self.P.save_res, 
-305                  "nodir183160/"+self.resfile) 
-
    306   
-
    307 -    def test_unassignedError(self): 
-
    308          """raise pdffit2.unassignedError when structure is undefined""" 
-309          self.assertRaises(pdffit2.unassignedError, self.P.save_res, 
-310          self.resfile) 
-
    311   
-312   
-
    313 -class save_structExceptions(unittest.TestCase): 
-
    314      #Same code as show_struct 
-315   
-
    316 -    def setUp(self): 
-
    317          self.P = PdfFit() 
-318          self.strufile = "temp.stru" 
-
    319   
-
    320 -    def tearDown(self): 
-
    321          del self.P 
-
    322   
-
    323 -    def test_IOError(self): 
-
    324          """raise IOError when structure cannot be saved""" 
-325          self.P.read_struct(datafile("Ni.stru")) 
-326          self.assertRaises(IOError, self.P.save_struct, 1, 
-327                  "nodir183160/"+self.strufile) 
-
    328   
-
    329 -    def test_unassignedError(self): 
-
    330          """raise pdffit2.unassignedError when structure is undefined""" 
-331          self.assertRaises(pdffit2.unassignedError, self.P.save_struct, 1, 
-332          self.strufile) 
-
    333   
-334   
-
    335 -class constrainExceptions(unittest.TestCase): 
-
    336   
-
    337 -    def setUp(self): 
-
    338          self.P = PdfFit() 
-339          self.par = 1 
-340          return 
-
    341   
-
    342 -    def tearDown(self): 
-
    343          self.P = None 
-344          return 
-
    345   
-
    346 -    def test_constraintError(self): 
-
    347          """raise constraintError when constraint is bad""" 
-348          self.P.read_struct(datafile("Ni.stru")) 
-349          self.P.read_data(datafile("Ni.dat"), 'X', 25.0, 0.0) 
-350          self.P.constrain('x(1)', 'junk+@1') 
-351          self.P.setpar(1, 0.01) 
-352          self.assertRaises(pdffit2.constraintError, self.P.calc) 
-353          self.assertRaises(pdffit2.constraintError, self.P.refine) 
-354          return 
-
    355   
-
    356 -    def test_unassignedError(self): 
-
    357          """raise pdffit2.unassignedError when variable is undefined""" 
-358          self.assertRaises(pdffit2.unassignedError, self.P.constrain, self.P.x(1), 
-359                  self.par) 
-360          return 
-
    361   
-
    362 -    def test_ValueError(self): 
-
    363          """raise ValueError when a variable index does not exist""" 
-364          self.P.read_struct(datafile("Ni.stru")) 
-365          self.assertRaises(ValueError, self.P.constrain, self.P.x(6), 
-366                  self.par) 
-367          return 
-
    368   
-
    369 -    def test_constrainNonRefVar(self): 
-
    370          "raise constraintError when attempting to constrain non-refinables" 
-371          self.P.read_struct(datafile("Ni.stru")) 
-372          self.P.read_data(datafile("Ni.dat"), 'X', 25.0, 0.0) 
-373          self.assertRaises(pdffit2.constraintError, 
-374                  self.P.constrain, 'rcut', '@7') 
-375          self.assertRaises(pdffit2.constraintError, 
-376                  self.P.constrain, 'rcut', 13) 
-377          self.assertRaises(pdffit2.constraintError, 
-378                  self.P.constrain, 'stepcut', '@17') 
-379          return 
-
    380   
-381   
-382   
-
    383 -class setvarExceptions(unittest.TestCase): 
-
    384   
-
    385 -    def setUp(self): 
-
    386          self.P = PdfFit() 
-387          self.val = 3.0 
-
    388   
-
    389 -    def tearDown(self): 
-
    390          del self.P 
-
    391   
-
    392 -    def test_unassignedError(self): 
-
    393          """raise pdffit2.unassignedError when variable is undefined""" 
-394          self.assertRaises(pdffit2.unassignedError, self.P.setvar, self.P.lat(1), 
-395                  self.val) 
-
    396   
-
    397 -    def test_ValueError(self): 
-
    398          """raise ValueError when a variable index does not exist""" 
-399          self.P.read_struct(datafile("Ni.stru")) 
-400          self.assertRaises(ValueError, self.P.setvar, self.P.lat(7), 
-401                  self.val) 
-
    402   
-403   
-
    404 -class getvarExceptions(unittest.TestCase): 
-
    405   
-
    406 -    def setUp(self): 
-
    407          self.P = PdfFit() 
-
    408   
-
    409 -    def tearDown(self): 
-
    410          del self.P 
-
    411   
-
    412 -    def test_unassignedError(self): 
-
    413          """raise pdffit2.unassignedError when variable is undefined""" 
-414          self.assertRaises(pdffit2.unassignedError, self.P.getvar, 
-415                  self.P.pscale()) 
-
    416   
-
    417 -    def test_ValueError(self): 
-
    418          """raise ValueError when a variable index does not exist""" 
-419          self.P.read_struct(datafile("Ni.stru")) 
-420          self.assertRaises(ValueError, self.P.getvar, self.P.lat(7)) 
-
    421   
-422   
-
    423 -class getRExceptions(unittest.TestCase): 
-
    424   
-
    425 -    def setUp(self): 
-
    426          self.P = PdfFit() 
-
    427   
-
    428 -    def tearDown(self): 
-
    429          del self.P 
-
    430   
-
    431 -    def test_unassignedError(self): 
-
    432          """raise pdffit2.unassignedError when data does not exist""" 
-433          self.assertRaises(pdffit2.unassignedError, self.P.getR) 
-
    434   
-435   
-
    436 -class getpdf_fitExceptions(unittest.TestCase): 
-
    437   
-
    438 -    def setUp(self): 
-
    439          self.P = PdfFit() 
-
    440   
-
    441 -    def tearDown(self): 
-
    442          del self.P 
-
    443   
-
    444 -    def test_unassignedError(self): 
-
    445          """raise pdffit2.unassignedError when data does not exist""" 
-446          self.assertRaises(pdffit2.unassignedError, self.P.getpdf_fit) 
-
    447   
-448   
-
    449 -class getpdf_obsExceptions(unittest.TestCase): 
-
    450   
-
    451 -    def setUp(self): 
-
    452          self.P = PdfFit() 
-
    453   
-
    454 -    def tearDown(self): 
-
    455          del self.P 
-
    456   
-
    457 -    def test_unassignedError(self): 
-
    458          """raise pdffit2.unassignedError when data does not exist""" 
-459          self.assertRaises(pdffit2.unassignedError, self.P.getpdf_obs) 
-
    460   
-461   
-
    462 -class getpdf_diffExceptions(unittest.TestCase): 
-
    463   
-
    464 -    def setUp(self): 
-
    465          self.P = PdfFit() 
-
    466   
-
    467 -    def tearDown(self): 
-
    468          del self.P 
-
    469   
-
    470 -    def test_unassignedError(self): 
-
    471          """raise pdffit2.unassignedError when data does not exist""" 
-472          self.assertRaises(pdffit2.unassignedError, self.P.getpdf_diff) 
-
    473   
-474   
-
    475 -class get_atomsExceptions(unittest.TestCase): 
-
    476   
-
    477 -    def setUp(self): 
-
    478          self.P = PdfFit() 
-
    479   
-
    480 -    def tearDown(self): 
-
    481          del self.P 
-
    482   
-
    483 -    def test_unassignedError(self): 
-
    484          """raise pdffit2.unassignedError when data does not exist""" 
-485          self.assertRaises(pdffit2.unassignedError, self.P.get_atoms) 
-
    486   
-487   
-
    488 -class getparExceptions(unittest.TestCase): 
-
    489   
-
    490 -    def setUp(self): 
-
    491          self.P = PdfFit() 
-
    492   
-
    493 -    def tearDown(self): 
-
    494          del self.P 
-
    495   
-
    496 -    def test_unassignedError1(self): 
-
    497          """raise pdffit2.unassignedError when parameter does not exist""" 
-498          self.assertRaises(pdffit2.unassignedError, self.P.getpar, 1) 
-
    499   
-
    500 -    def test_unassignedError2(self): 
-
    501          """raise pdffit2.unassignedError when parameter does not exist""" 
-502          self.P.read_struct(datafile("Ni.stru")) 
-503          self.P.constrain(self.P.lat(1), 2) 
-504          self.assertRaises(pdffit2.unassignedError, self.P.getpar, 1) 
-
    505   
-506   
-
    507 -class pselExceptions(unittest.TestCase): 
-
    508   
-
    509 -    def setUp(self): 
-
    510          self.P = PdfFit() 
-511          self.ip = 1 
-
    512   
-
    513 -    def tearDown(self): 
-
    514          del self.P 
-
    515   
-
    516 -    def test_unassignedError(self): 
-
    517          """raise pdffit2.unassignedError when phase does not exist""" 
-518          self.assertRaises(pdffit2.unassignedError, self.P.pdesel, self.ip) 
-
    519   
-
    520 -    def test_unassignedError2(self): 
-
    521          """raise pdffit2.unassignedError when phase does not exist""" 
-522          self.assertRaises(pdffit2.unassignedError, self.P.pdesel, self.ip) 
-
    523   
-524   
-
    525 -class pdeselExceptions(unittest.TestCase): 
-
    526   
-
    527 -    def setUp(self): 
-
    528          self.P = PdfFit() 
-529          self.ip = 1 
-
    530   
-
    531 -    def tearDown(self): 
-
    532          del self.P 
-
    533   
-
    534 -    def test_unassignedError1(self): 
-
    535          """raise pdffit2.unassignedError when phase does not exist""" 
-536          self.assertRaises(pdffit2.unassignedError, self.P.pdesel, self.ip) 
-
    537   
-
    538 -    def test_unassignedError2(self): 
-
    539          """raise pdffit2.unassignedError when phase does not exist""" 
-540          self.P.read_struct(datafile("Ni.stru")) 
-541          self.assertRaises(pdffit2.unassignedError, self.P.pdesel, self.ip) 
-
    542   
-543   
-
    544 -class selectAtomTypeExceptions(unittest.TestCase): 
-
    545   
-
    546 -    def setUp(self): 
-
    547          self.P = PdfFit() 
-548          self.iset = 1 
-549          self.i = 1 
-
    550   
-
    551 -    def tearDown(self): 
-
    552          del self.P 
-
    553   
-
    554 -    def test_unassignedError1(self): 
-
    555          """raise pdffit2.unassignedError when set does not exist""" 
-556          self.assertRaises(pdffit2.unassignedError, self.P.selectAtomType, 
-557                  self.iset, 'i', 'Ni', True) 
-
    558   
-
    559 -    def test_unassignedError2(self): 
-
    560          """raise pdffit2.unassignedError when set does not exist""" 
-561          self.P.read_struct(datafile("Ni.stru")) 
-562          # selectAtomType should pass with one phase defined 
-563          self.P.read_data(datafile("Ni.dat"), 'X', 25.0, 0.0) 
-564          self.P.selectAtomType(self.iset, 'i', 'Ni', True) 
-565          self.P.selectAtomType(self.iset, 'j', 'Ni', False) 
-566          # but fail for phase 2 which is not present 
-567          self.assertRaises(pdffit2.unassignedError, self.P.selectAtomType, 
-568                  2, 'i', 'Ca', True) 
-
    569   
-
    570 -    def test_ijcharValueError(self): 
-
    571          """raise ValueError when ijchar is neither 'i' nor 'j'""" 
-572          self.P.read_struct(datafile("Ni.stru")) 
-573          self.P.read_data(datafile("Ni.dat"), 'X', 25.0, 0.0) 
-574          self.P.selectAtomType(self.iset, 'i', 'Ni', True) 
-575          self.P.selectAtomType(self.iset, 'j', 'Ni', True) 
-576          self.assertRaises(ValueError, self.P.selectAtomType, 
-577                  self.iset, 'k', 'Ni', True) 
-
    578   
-579   
-
    580 -class selectAtomIndexExceptions(unittest.TestCase): 
-
    581   
-
    582 -    def setUp(self): 
-
    583          self.P = PdfFit() 
-584          self.iset = 1 
-585          self.i = 1 
-
    586   
-
    587 -    def tearDown(self): 
-
    588          del self.P 
-
    589   
-
    590 -    def test_unassignedError1(self): 
-
    591          """raise pdffit2.unassignedError when set does not exist""" 
-592          self.assertRaises(pdffit2.unassignedError, self.P.selectAtomIndex, 
-593                  self.iset, 'i', self.i, True) 
-
    594   
-
    595 -    def test_unassignedError2(self): 
-
    596          """raise pdffit2.unassignedError when set does not exist""" 
-597          self.P.read_struct(datafile("Ni.stru")) 
-598          # pass for phase 1 
-599          self.P.read_data(datafile("Ni.dat"), 'X', 25.0, 0.0) 
-600          self.P.selectAtomIndex(self.iset, 'i', 1, True) 
-601          self.P.selectAtomIndex(self.iset, 'i', 2, False) 
-602          # fail for phase 2 
-603          self.assertRaises(pdffit2.unassignedError, self.P.selectAtomIndex, 
-604                  2, 'i', 1, True) 
-
    605   
-
    606 -    def test_ValueError(self): 
-
    607          """raise ValueError when selected atom does not exist""" 
-608          self.P.read_struct(datafile("Ni.stru")) 
-609          self.P.read_data(datafile("Ni.dat"), 'X', 25.0, 0.0) 
-610          self.assertRaises(ValueError, self.P.selectAtomIndex, 
-611                  self.iset, 'i', 6, True) 
-
    612   
-613   
-
    614 -class selectAllExceptions(unittest.TestCase): 
-
    615   
-
    616 -    def setUp(self): 
-
    617          self.P = PdfFit() 
-618          self.iset = 1 
-619          self.i = 1 
-
    620   
-
    621 -    def tearDown(self): 
-
    622          del self.P 
-
    623   
-
    624 -    def test_unassignedError1(self): 
-
    625          """raise pdffit2.unassignedError when set does not exist""" 
-626          self.assertRaises(pdffit2.unassignedError, self.P.selectAll, 
-627                  self.iset, 'i') 
-
    628   
-
    629 -    def test_unassignedError2(self): 
-
    630          """raise pdffit2.unassignedError when set does not exist""" 
-631          self.P.read_struct(datafile("Ni.stru")) 
-632          # fail when there is no dataset 
-633          self.assertRaises(pdffit2.unassignedError, self.P.selectAll, 
-634                  self.iset, 'i') 
-635          # pass with dataset 
-636          self.P.read_data(datafile("Ni.dat"), 'X', 25.0, 0.0) 
-637          self.P.selectAll(self.iset, 'i') 
-638          self.P.selectAll(self.iset, 'j') 
-639          # fail for phase 2 
-640          self.assertRaises(pdffit2.unassignedError, self.P.selectAll, 2, 'i') 
-641          self.assertRaises(pdffit2.unassignedError, self.P.selectAll, 2, 'j') 
-
    642   
-643   
-
    644 -class selectNoneExceptions(unittest.TestCase): 
-
    645   
-
    646 -    def setUp(self): 
-
    647          self.P = PdfFit() 
-648          self.iset = 1 
-649          self.i = 1 
-
    650   
-
    651 -    def tearDown(self): 
-
    652          del self.P 
-
    653   
-
    654 -    def test_unassignedError1(self): 
-
    655          """raise pdffit2.unassignedError when set does not exist""" 
-656          self.assertRaises(pdffit2.unassignedError, self.P.selectNone, 
-657                  self.iset, 'i') 
-
    658   
-
    659 -    def test_unassignedError2(self): 
-
    660          """raise pdffit2.unassignedError when set does not exist""" 
-661          self.P.read_struct(datafile("Ni.stru")) 
-662          # fail when there is no dataset 
-663          self.assertRaises(pdffit2.unassignedError, self.P.selectNone, 
-664                  self.iset, 'i') 
-665          # pass with dataset 
-666          self.P.read_data(datafile("Ni.dat"), 'X', 25.0, 0.0) 
-667          self.P.selectNone(self.iset, 'i') 
-668          self.P.selectNone(self.iset, 'j') 
-669          # fail for phase 2 
-670          self.assertRaises(pdffit2.unassignedError, self.P.selectNone, 2, 'i') 
-671          self.assertRaises(pdffit2.unassignedError, self.P.selectNone, 2, 'j') 
-
    672   
-673   
-
    674 -class bangExceptions(unittest.TestCase): 
-
    675   
-
    676 -    def setUp(self): 
-
    677          self.P = PdfFit() 
-678          self.a1 = 1 
-679          self.a2 = 2 
-680          self.a3 = 3 
-
    681   
-
    682 -    def tearDown(self): 
-
    683          del self.P 
-
    684   
-
    685 -    def test_unassignedError(self): 
-
    686          """raise pdffit2.unassignedError when phase does not exist""" 
-687          self.assertRaises(pdffit2.unassignedError, self.P.bang, self.a1, 
-688                  self.a2, self.a3) 
-
    689   
-
    690 -    def test_ValueError1(self): 
-
    691          """raise ValueError when selected atom(s) does not exist""" 
-692          self.P.read_struct(datafile('Ni.stru')) 
-693          self.P.read_data(datafile("Ni.dat"), 'X', 25.0, 0.0) 
-694          self.assertRaises(ValueError, self.P.bang, 0, 
-695                  self.a2, self.a3) 
-
    696   
-
    697 -    def test_ValueError2(self): 
-
    698          """raise ValueError when selected atom(s) does not exist""" 
-699          self.P.read_struct(datafile('Ni.stru')) 
-700          self.assertRaises(ValueError, self.P.bang, self.a1, 
-701                  -1, self.a3) 
-
    702   
-
    703 -    def test_ValueError3(self): 
-
    704          """raise ValueError when selected atom(s) does not exist""" 
-705          self.P.read_struct(datafile('Ni.stru')) 
-706          self.assertRaises(ValueError, self.P.bang, self.a1, 
-707                  self.a2, 6) 
-
    708   
-709   
-
    710 -class blenExceptions(unittest.TestCase): 
-
    711   
-
    712 -    def setUp(self): 
-
    713          self.P = PdfFit() 
-714          self.a1 = 1 
-715          self.a2 = 2 
-
    716   
-
    717 -    def tearDown(self): 
-
    718          del self.P 
-
    719   
-
    720 -    def test_unassignedError(self): 
-
    721          """raise pdffit2.unassignedError when no data exists""" 
-722          self.assertRaises(pdffit2.unassignedError, self.P.blen, self.a1, 
-723                  self.a2) 
-
    724   
-
    725 -    def test_ValueError1(self): 
-
    726          """raise ValueError when selected atom(s) does not exist""" 
-727          self.P.read_struct(datafile('Ni.stru')) 
-728          self.assertRaises(ValueError, self.P.blen, 0, self.a2) 
-
    729   
-
    730 -    def test_ValueError2(self): 
-
    731          """raise ValueError when selected atom(s) does not exist""" 
-732          self.P.read_struct(datafile('Ni.stru')) 
-733          self.assertRaises(ValueError, self.P.blen, self.a1, 6) 
-
    734   
-
    735 -    def test_ValueError3(self): 
-
    736          """raise ValueError when selected atom(s) does not exist""" 
-737          self.P.read_struct(datafile('Ni.stru')) 
-738          self.assertRaises(ValueError, self.P.blen, 0, 6) 
-
    739   
-740   
-
    741 -class show_scatExceptions(unittest.TestCase): 
-
    742   
-
    743 -    def setUp(self): 
-
    744          self.P = PdfFit() 
-
    745   
-
    746 -    def tearDown(self): 
-
    747          del self.P 
-
    748   
-
    749 -    def test_unassignedError(self): 
-
    750          """raise pdffit2.unassignedError when phase does not exist""" 
-751          self.assertRaises(pdffit2.unassignedError, self.P.show_scat, 'X') 
-
    752   
-753   
-754  #class set_scatExceptions(unittest.TestCase): 
-755      #I'm not sure how to use this function 
-756   
-757  #    def setUp(self): 
-758  #        self.P = PdfFit() 
-759  # 
-760  #    def test_unassignedError1(self): 
-761  #        """raise pdffit2.unassignedError when phase does not exist""" 
-762  #        #self.assertRaises(pdffit2.constraintError, self.P.calc) 
-763  # 
-764  #    def test_unassignedError2(self): 
-765  #        """raise pdffit2.unassignedError when phase does not exist""" 
-766  #        #self.assertRaises(pdffit2.constraintError, self.P.calc) 
-767  # 
-768  #    def test_ValueError(self): 
-769  #        """raise pdffit2.unassignedError when selected atom does not exist""" 
-770  #        #self.assertRaises(pdffit2.constraintError, self.P.calc) 
-771   
-772   
-
    773 -class num_atomsExceptions(unittest.TestCase): 
-
    774   
-
    775 -    def setUp(self): 
-
    776          self.P = PdfFit() 
-
    777   
-
    778 -    def tearDown(self): 
-
    779          del self.P 
-
    780   
-
    781 -    def test_unassignedError(self): 
-
    782          """raise pdffit2.unassignedError when no atoms exist""" 
-783          self.assertRaises(pdffit2.unassignedError, self.P.num_atoms) 
-
    784   
-
    785 -class fixparExceptions(unittest.TestCase): 
-
    786   
-
    787 -    def setUp(self): 
-
    788          self.P = PdfFit() 
-
    789   
-
    790 -    def tearDown(self): 
-
    791          del self.P 
-
    792   
-
    793 -    def test_unassignedError(self): 
-
    794          """raise pdffit2.unassignedError when parameter does not exist""" 
-795          self.P.read_struct(datafile("Ni.stru")) 
-796          self.P.read_data(datafile("Ni.dat"), 'X', 25.0, 0.0) 
-797          self.assertRaises(pdffit2.unassignedError, self.P.fixpar, 1) 
-
    798   
-799   
-
    800 -class freeparExceptions(unittest.TestCase): 
-
    801   
-
    802 -    def setUp(self): 
-
    803          self.P = PdfFit() 
-
    804   
-
    805 -    def tearDown(self): 
-
    806          del self.P 
-
    807   
-
    808 -    def test_unassignedError(self): 
-
    809          """raise pdffit2.unassignedError when parameter does not exist""" 
-810          self.P.read_struct(datafile("Ni.stru")) 
-811          self.P.read_data(datafile("Ni.dat"), 'X', 25.0, 0.0) 
-812          self.assertRaises(pdffit2.unassignedError, self.P.freepar, 1) 
-
    813   
-814   
-
    815 -class setphaseExceptions(unittest.TestCase): 
-
    816   
-
    817 -    def setUp(self): 
-
    818          self.P = PdfFit() 
-
    819   
-
    820 -    def tearDown(self): 
-
    821          del self.P 
-
    822   
-
    823 -    def test_unassignedError(self): 
-
    824          """raise pdffit2.unassignedError when phase does not exist""" 
-825          self.P.read_struct(datafile("Ni.stru")) 
-826          self.P.read_data(datafile("Ni.dat"), 'X', 25.0, 0.0) 
-827          self.assertRaises(pdffit2.unassignedError, self.P.setphase, 2) 
-
    828   
-829   
-
    830 -class setdataExceptions(unittest.TestCase): 
-
    831   
-
    832 -    def setUp(self): 
-
    833          self.P = PdfFit() 
-
    834   
-
    835 -    def tearDown(self): 
-
    836          del self.P 
-
    837   
-
    838 -    def test_unassignedError(self): 
-
    839          """raise pdffit2.unassignedError when data set does not exist""" 
-840          self.P.read_struct(datafile("Ni.stru")) 
-841          self.P.read_data(datafile("Ni.dat"), 'X', 25.0, 0.0) 
-842          self.assertRaises(pdffit2.unassignedError, self.P.setdata, 2) 
-
    843   
-
    844 -class getcrwExceptions(unittest.TestCase): 
-
    845   
-
    846 -    def setUp(self): 
-
    847          self.P = PdfFit() 
-
    848   
-
    849 -    def tearDown(self): 
-
    850          del self.P 
-
    851   
-
    852 -    def test_unassignedError(self): 
-
    853          """raise pdffit2.unassignedError when data does not exist""" 
-854          self.assertRaises(pdffit2.unassignedError, self.P.getcrw) 
-
    855   
-856   
-857   
-858  #main 
-859  if __name__ == '__main__': 
-860      #suite = unittest.makeSuite(num_atomsExceptions) 
-861      #unittest.TextTestRunner(verbosity=3).run(suite) 
-862      #testcase = calcExceptions('test_unassignedError') 
-863      #unittest.TextTestRunner(verbosity=3).run(testcase) 
-864      unittest.main() 
-865   
-866  # End of file 
-867   
-
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    diffpy.pdffit2
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    - - Package diffpy :: - Package pdffit2 :: - Package tests :: - Module ExceptionsTest :: - Class allocExceptions - - - - - - -
    [hide private]
    [frames] | no frames]
    -
    - -

    Class allocExceptions

    source code

    -
    -            object --+    
-                     |    
-unittest.case.TestCase --+
-                         |
-                        allocExceptions
-
    - -
    - - - - - - - - - -
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    Nested Classes[hide private]
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    -

    Inherited from unittest.case.TestCase: - failureException -

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    - - - - - -
    Instance Methods[hide private]
    -
    -   - - - - - - -
    setUp(self)
    - Hook method for setting up the test fixture before exercising it.    		 - source code - -
    - -
    -   - - - - - - -
    tearDown(self)
    - Hook method for deconstructing the test fixture after testing it.    		 - source code - -
    - -
    -   - - - - - - -
    test_ValueError1(self)
    - raise ValueError when qmax < 0    		 - source code - -
    - -
    -   - - - - - - -
    test_ValueError2(self)
    - raise ValueError when qdamp < 0    		 - source code - -
    - -
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    test_ValueError3(self)
    - raise ValueError when rmin < 0    		 - source code - -
    - -
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    test_ValueError4(self)
    - raise ValueError when rmax < 0    		 - source code - -
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    test_ValueError5(self)
    - raise ValueError when bin < 0    		 - source code - -
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    test_ValueError6(self)
    - raise ValueError when rmax < rmin    		 - source code - -
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    test_ValueError7(self)
    - raise ValueError when qdamp < 0    		 - source code - -
    - -
    -

    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

    -

    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

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    Inherited from unittest.case.TestCase: - longMessage, - maxDiff -

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    Inherited from unittest.case.TestCase (private): - _classSetupFailed, - _diffThreshold -

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    - - 
    -Hook method for setting up the test fixture before exercising it.
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    -
    Overrides: - unittest.case.TestCase.setUp -
    (inherited documentation)
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    -
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    - - 
    -Hook method for deconstructing the test fixture after testing it.
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    Overrides: - unittest.case.TestCase.tearDown -
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    Class bangExceptions

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    - Hook method for deconstructing the test fixture after testing it.    		 - source code - -
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    test_unassignedError(self)
    - raise pdffit2.unassignedError when phase does not exist    		 - source code - -
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    test_ValueError1(self)
    - raise ValueError when selected atom(s) does not exist    		 - source code - -
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    test_ValueError2(self)
    - raise ValueError when selected atom(s) does not exist    		 - source code - -
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    - raise ValueError when selected atom(s) does not exist    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

    -

    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

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    Inherited from object: - __delattr__, - __format__, - __getattribute__, - __new__, - __reduce__, - __reduce_ex__, - __setattr__, - __sizeof__, - __subclasshook__ -

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    source code

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    - Hook method for deconstructing the test fixture after testing it.    		 - source code - -
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    test_unassignedError(self)
    - raise pdffit2.unassignedError when no data exists    		 - source code - -
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    test_ValueError1(self)
    - raise ValueError when selected atom(s) does not exist    		 - source code - -
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    test_ValueError2(self)
    - raise ValueError when selected atom(s) does not exist    		 - source code - -
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    - raise ValueError when selected atom(s) does not exist    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

    -

    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

    -

    Inherited from object: - __delattr__, - __format__, - __getattribute__, - __new__, - __reduce__, - __reduce_ex__, - __setattr__, - __sizeof__, - __subclasshook__ -

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    - - - - diff --git a/static_root/doc/pdffit2/diffpy.pdffit2.tests.ExceptionsTest.calcExceptions-class.html b/static_root/doc/pdffit2/diffpy.pdffit2.tests.ExceptionsTest.calcExceptions-class.html deleted file mode 100644 index 47f37db6..00000000 --- a/static_root/doc/pdffit2/diffpy.pdffit2.tests.ExceptionsTest.calcExceptions-class.html +++ /dev/null @@ -1,457 +0,0 @@ - - - - - diffpy.pdffit2.tests.ExceptionsTest.calcExceptions - - - - - - - - - - - - - - - - - - - - - - - -
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    Class calcExceptions

    source code

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    - Hook method for deconstructing the test fixture after testing it.    		 - source code - -
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    test_unassignedError(self)
    - raise pdffit2.unassignedError when no space has been allocated    		 - source code - -
    - -
    -

    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

    -

    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

    -

    Inherited from object: - __delattr__, - __format__, - __getattribute__, - __new__, - __reduce__, - __reduce_ex__, - __setattr__, - __sizeof__, - __subclasshook__ -

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    - - - - diff --git a/static_root/doc/pdffit2/diffpy.pdffit2.tests.ExceptionsTest.constrainExceptions-class.html b/static_root/doc/pdffit2/diffpy.pdffit2.tests.ExceptionsTest.constrainExceptions-class.html deleted file mode 100644 index c9ff49c3..00000000 --- a/static_root/doc/pdffit2/diffpy.pdffit2.tests.ExceptionsTest.constrainExceptions-class.html +++ /dev/null @@ -1,508 +0,0 @@ - - - - - diffpy.pdffit2.tests.ExceptionsTest.constrainExceptions - - - - - - - - - - - - - - - - - - - - - - - -
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    - raise constraintError when constraint is bad    		 - source code - -
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    - raise pdffit2.unassignedError when variable is undefined    		 - source code - -
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    - raise ValueError when a variable index does not exist    		 - source code - -
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    - raise constraintError when attempting to constrain non-refinables    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

    -

    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

    -

    Inherited from object: - __delattr__, - __format__, - __getattribute__, - __new__, - __reduce__, - __reduce_ex__, - __setattr__, - __sizeof__, - __subclasshook__ -

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    - - - - diff --git a/static_root/doc/pdffit2/diffpy.pdffit2.tests.ExceptionsTest.fixparExceptions-class.html b/static_root/doc/pdffit2/diffpy.pdffit2.tests.ExceptionsTest.fixparExceptions-class.html deleted file mode 100644 index e5301de1..00000000 --- a/static_root/doc/pdffit2/diffpy.pdffit2.tests.ExceptionsTest.fixparExceptions-class.html +++ /dev/null @@ -1,457 +0,0 @@ - - - - - diffpy.pdffit2.tests.ExceptionsTest.fixparExceptions - - - - - - - - - - - - - - - - - - - - - - - -
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    - Hook method for deconstructing the test fixture after testing it.    		 - source code - -
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    - raise pdffit2.unassignedError when parameter does not exist    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

    -

    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

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    - raise pdffit2.unassignedError when parameter does not exist    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

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    - raise pdffit2.unassignedError when data does not exist    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

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    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

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    - raise pdffit2.unassignedError when data does not exist    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

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    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

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    - raise pdffit2.unassignedError when data does not exist    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

    -

    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

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    - raise pdffit2.unassignedError when data does not exist    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

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    - raise pdffit2.unassignedError when data does not exist    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

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    - raise ValueError when a variable index does not exist    		 - source code - -
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    - raise pdffit2.unassignedError when no atoms exist    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

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    - Hook method for deconstructing the test fixture after testing it.    		 - source code - -
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    - raise pdffit2.unassignedError when phase does not exist    		 - source code - -
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    - raise pdffit2.unassignedError when phase does not exist    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

    -

    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

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    Class pdfrangeExceptions

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    test_ValueError1(self)
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    - raise ValueError when range outside of data    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

    -

    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

    -

    Inherited from object: - __delattr__, - __format__, - __getattribute__, - __new__, - __reduce__, - __reduce_ex__, - __setattr__, - __sizeof__, - __subclasshook__ -

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    - - - - diff --git a/static_root/doc/pdffit2/diffpy.pdffit2.tests.ExceptionsTest.pselExceptions-class.html b/static_root/doc/pdffit2/diffpy.pdffit2.tests.ExceptionsTest.pselExceptions-class.html deleted file mode 100644 index eb9881e6..00000000 --- a/static_root/doc/pdffit2/diffpy.pdffit2.tests.ExceptionsTest.pselExceptions-class.html +++ /dev/null @@ -1,474 +0,0 @@ - - - - - diffpy.pdffit2.tests.ExceptionsTest.pselExceptions - - - - - - - - - - - - - - - - - - - - - - - -
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    - Hook method for deconstructing the test fixture after testing it.    		 - source code - -
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    - raise pdffit2.unassignedError when phase does not exist    		 - source code - -
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    test_unassignedError2(self)
    - raise pdffit2.unassignedError when phase does not exist    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

    -

    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

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    - raise IOError when data file does not exist    		 - source code - -
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    - raise pdffit2.dataError when data has improper spacing    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

    -

    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

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    Inherited from object: - __delattr__, - __format__, - __getattribute__, - __new__, - __reduce__, - __reduce_ex__, - __setattr__, - __sizeof__, - __subclasshook__ -

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    Class read_data_listsExceptions

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    - Hook method for deconstructing the test fixture after testing it.    		 - source code - -
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    test_ValueError1(self)
    - raise ValueError when lists are of different length    		 - source code - -
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    test_ValueError2(self)
    - raise ValueError when qmax < 0    		 - source code - -
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    test_ValueError3(self)
    - raise ValueError when qdamp < 0    		 - source code - -
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    - raise pdffit2.dataError when data has improper spacing    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

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    Class read_structExceptions

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    test_IOError(self)
    - raise IOError when structure file does not exist    		 - source code - -
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    test_structureError(self)
    - raise pdffit2.structureError when structure is malformed    		 - source code - -
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    - raise pdffit2.structureError when unit cell volume is negative    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

    -

    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

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    - Hook method for deconstructing the test fixture after testing it.    		 - source code - -
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    test_IOError(self)
    - raise IOError when dif cannot be saved    		 - source code - -
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    test_unassignedError(self)
    - raise pdffit2.unassignedError when structure is undefined    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

    -

    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

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    Inherited from object: - __delattr__, - __format__, - __getattribute__, - __new__, - __reduce__, - __reduce_ex__, - __setattr__, - __sizeof__, - __subclasshook__ -

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    - raise IOError when structure cannot be saved    		 - source code - -
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    - raise pdffit2.unassignedError when structure is undefined    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

    -

    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

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    - raise IOError when residual file cannot be saved    		 - source code - -
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    - raise pdffit2.unassignedError when structure is undefined    		 - source code - -
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    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

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    - raise pdffit2.unassignedError when structure is undefined    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

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    - raise pdffit2.unassignedError when set does not exist    		 - source code - -
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    - raise pdffit2.unassignedError when set does not exist    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

    -

    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

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    - raise pdffit2.unassignedError when set does not exist    		 - source code - -
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    - raise pdffit2.unassignedError when set does not exist    		 - source code - -
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    - raise ValueError when selected atom does not exist    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

    -

    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

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    - raise pdffit2.unassignedError when set does not exist    		 - source code - -
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    - raise pdffit2.unassignedError when set does not exist    		 - source code - -
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    - raise ValueError when ijchar is neither 'i' nor 'j'    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

    -

    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

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    - raise pdffit2.unassignedError when set does not exist    		 - source code - -
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    - raise pdffit2.unassignedError when set does not exist    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

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    - raise pdffit2.unassignedError when data set does not exist    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

    -

    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

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    - raise pdffit2.unassignedError when phase does not exist    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

    -

    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

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    - raise ValueError when a variable index does not exist    		 - source code - -
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    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

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    - raise pdffit2.unassignedError when phase does not exist    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

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    -Unit tests for PdfFit.py
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    -   - - TestPdfFit -
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    -   - - __package__ = 'diffpy.pdffit2.tests' -
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    Imports: - unittest, - PdfFit, - pdffit2, - datafile -


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    - - Package diffpy :: - Package pdffit2 :: - Package tests :: - Module TestPdfFit - - - - - - -
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    Source Code for Module diffpy.pdffit2.tests.TestPdfFit

    -
    -  1  #!/usr/bin/env python 
-  2   
-  3  """Unit tests for PdfFit.py 
-  4  """ 
-  5   
-  6   
-  7  import unittest 
-  8   
-  9  from diffpy.pdffit2 import PdfFit 
- 10  from diffpy.pdffit2 import pdffit2 
- 11  from pdffit2testutils import datafile 
- 12   
- 13  ############################################################################## 
-
     14 -class TestPdfFit(unittest.TestCase): 
-
     15   
- 16      places = 6 
- 17   
-
     18 -    def setUp(self): 
-
     19          self.P = PdfFit() 
- 20          return 
-
     21   
-
     22 -    def tearDown(self): 
-
     23          del self.P 
- 24          return 
-
     25   
- 26  #   def test_intro(self): 
- 27  #       """check PdfFit.intro() 
- 28  #       """ 
- 29  #       return 
- 30   
-
     31 -    def test_add_structure(self): 
-
     32          """check PdfFit.add_structure() 
- 33          """ 
- 34          # skip test when diffpy.Structure is not installed 
- 35          try: 
- 36              from diffpy.Structure import Structure 
- 37          except ImportError: 
- 38              return 
- 39          ni = Structure(filename=datafile('Ni.stru')) 
- 40          self.P.add_structure(ni) 
- 41          self.assertEqual(4, self.P.num_atoms()) 
- 42          return 
-
     43   
- 44  #   def test_read_struct(self): 
- 45  #       """check PdfFit.read_struct() 
- 46  #       """ 
- 47  #       return 
- 48  # 
- 49  #   def test_read_struct_string(self): 
- 50  #       """check PdfFit.read_struct_string() 
- 51  #       """ 
- 52  #       return 
- 53  # 
- 54  #   def test_read_data(self): 
- 55  #       """check PdfFit.read_data() 
- 56  #       """ 
- 57  #       return 
- 58  # 
- 59  #   def test_read_data_string(self): 
- 60  #       """check PdfFit.read_data_string() 
- 61  #       """ 
- 62  #       return 
- 63  # 
- 64  #   def test_read_data_lists(self): 
- 65  #       """check PdfFit.read_data_lists() 
- 66  #       """ 
- 67  #       return 
- 68  # 
- 69  #   def test_pdfrange(self): 
- 70  #       """check PdfFit.pdfrange() 
- 71  #       """ 
- 72  #       return 
- 73  # 
- 74  #   def test_reset(self): 
- 75  #       """check PdfFit.reset() 
- 76  #       """ 
- 77  #       return 
- 78   
-
     79 -    def test_alloc(self): 
-
     80          """check PdfFit.alloc() 
- 81          """ 
- 82          # alloc and read_struct can be called in any order. 
- 83          self.P.alloc('X', 25, 0.0, 0.01, 10, 1000) 
- 84          # without a structure calculated PDF is all zero 
- 85          self.P.calc() 
- 86          Gzero = self.P.getpdf_fit() 
- 87          self.assertEqual(1000*[0.0], Gzero) 
- 88          self.P.read_struct(datafile('Ni.stru')) 
- 89          self.P.calc() 
- 90          # check r-values 
- 91          r = self.P.getR() 
- 92          self.assertEqual(1000, len(r)) 
- 93          for i in range(1000): 
- 94              self.assertAlmostEqual(0.01*(i + 1), r[i], self.places) 
- 95          Gfit_alloc_read = self.P.getpdf_fit() 
- 96          # now try the other order 
- 97          self.P.reset() 
- 98          self.P.read_struct(datafile('Ni.stru')) 
- 99          self.P.alloc('X', 25, 0.0, 0.01, 10, 1000) 
-100          self.P.calc() 
-101          Gfit_read_alloc = self.P.getpdf_fit() 
-102          # and they should be the same 
-103          self.assertEqual(Gfit_read_alloc, Gfit_alloc_read) 
-104          return 
-
    105   
-106  #   def test_calc(self): 
-107  #       """check PdfFit.calc() 
-108  #       """ 
-109  #       return 
-110  # 
-111  #   def test_refine(self): 
-112  #       """check PdfFit.refine() 
-113  #       """ 
-114  #       return 
-115  # 
-116  #   def test_refine_step(self): 
-117  #       """check PdfFit.refine_step() 
-118  #       """ 
-119  #       return 
-120  # 
-121  #   def test_save_pdf(self): 
-122  #       """check PdfFit.save_pdf() 
-123  #       """ 
-124  #       return 
-125  # 
-126  #   def test_save_pdf_string(self): 
-127  #       """check PdfFit.save_pdf_string() 
-128  #       """ 
-129  #       return 
-130  # 
-131  #   def test_save_dif(self): 
-132  #       """check PdfFit.save_dif() 
-133  #       """ 
-134  #       return 
-135  # 
-136  #   def test_save_dif_string(self): 
-137  #       """check PdfFit.save_dif_string() 
-138  #       """ 
-139  #       return 
-140  # 
-141  #   def test_save_res(self): 
-142  #       """check PdfFit.save_res() 
-143  #       """ 
-144  #       return 
-145  # 
-146  #   def test_save_res_string(self): 
-147  #       """check PdfFit.save_res_string() 
-148  #       """ 
-149  #       return 
-150   
-
    151 -    def test_get_structure(self): 
-
    152          """check PdfFit.get_structure() 
-153          """ 
-154          self.P.read_struct(datafile('Ni.stru')) 
-155          self.P.read_struct(datafile('PbScW25TiO3.stru')) 
-156          stru1 = self.P.get_structure(1) 
-157          self.assertEqual(4, len(stru1)) 
-158          self.assertEqual('Ni', stru1[0].element) 
-159          stru2 = self.P.get_structure(2) 
-160          self.assertEqual(56, len(stru2)) 
-161          self.assertEqual('Ti', stru2[-1].element) 
-162          return 
-
    163   
-164  #   def test_save_struct(self): 
-165  #       """check PdfFit.save_struct() 
-166  #       """ 
-167  #       return 
-168  # 
-169  #   def test_save_struct_string(self): 
-170  #       """check PdfFit.save_struct_string() 
-171  #       """ 
-172  #       return 
-173  # 
-174  #   def test_show_struct(self): 
-175  #       """check PdfFit.show_struct() 
-176  #       """ 
-177  #       return 
-178  # 
-179  #   def test_constrain(self): 
-180  #       """check PdfFit.constrain() 
-181  #       """ 
-182  #       return 
-183  # 
-184  #   def test_setpar(self): 
-185  #       """check PdfFit.setpar() 
-186  #       """ 
-187  #       return 
-188  # 
-189  #   def test_setvar(self): 
-190  #       """check PdfFit.setvar() 
-191  #       """ 
-192  #       return 
-193  # 
-194  #   def test_getvar(self): 
-195  #       """check PdfFit.getvar() 
-196  #       """ 
-197  #       return 
-198  # 
-199  #   def test_getrw(self): 
-200  #       """check PdfFit.getrw() 
-201  #       """ 
-202  #       return 
-203  # 
-204  #   def test_getR(self): 
-205  #       """check PdfFit.getR() 
-206  #       """ 
-207  #       return 
-208  # 
-209  #   def test_getpdf_fit(self): 
-210  #       """check PdfFit.getpdf_fit() 
-211  #       """ 
-212  #       return 
-213  # 
-214  #   def test_getpdf_obs(self): 
-215  #       """check PdfFit.getpdf_obs() 
-216  #       """ 
-217  #       return 
-218  # 
-219  #   def test_getpdf_diff(self): 
-220  #       """check PdfFit.getpdf_diff() 
-221  #       """ 
-222  #       return 
-223   
-
    224 -    def test_get_atoms(self): 
-
    225          """check PdfFit.get_atoms() 
-226          """ 
-227          self.P.read_struct(datafile('Ni.stru')) 
-228          self.P.read_struct(datafile('PbScW25TiO3.stru')) 
-229          self.P.setphase(1) 
-230          a1 = self.P.get_atoms() 
-231          a2 = self.P.get_atoms(2) 
-232          self.assertEqual(4*['NI'], a1) 
-233          self.assertEqual(8*['PB']+24*['O']+8*['SC']+8*['W']+8*['TI'], a2) 
-234          return 
-
    235   
-
    236 -    def test_get_atom_types(self): 
-
    237          """check PdfFit.get_atom_types() 
-238          """ 
-239          self.P.read_struct(datafile('Ni.stru')) 
-240          self.P.read_struct(datafile('PbScW25TiO3.stru')) 
-241          self.P.setphase(1) 
-242          atp1 = self.P.get_atom_types() 
-243          atp2 = self.P.get_atom_types(2) 
-244          self.assertEqual(['NI'], atp1) 
-245          self.assertEqual(['PB', 'O', 'SC', 'W', 'TI'], atp2) 
-246          return 
-
    247   
-
    248 -    def test_num_phases(self): 
-
    249          """check PdfFit.num_phases() 
-250          """ 
-251          self.assertEqual(0, self.P.num_phases()) 
-252          self.P.read_struct(datafile('Ni.stru')) 
-253          self.assertEqual(1, self.P.num_phases()) 
-254          self.P.read_struct(datafile('PbScW25TiO3.stru')) 
-255          self.assertEqual(2, self.P.num_phases()) 
-256          self.P.reset() 
-257          self.assertEqual(0, self.P.num_phases()) 
-258          return 
-
    259   
-
    260 -    def test_num_datasets(self): 
-
    261          """check PdfFit.num_datasets() 
-262          """ 
-263          self.assertEqual(0, self.P.num_datasets()) 
-264          self.P.read_data(datafile('Ni.dat'), 'X', 25.0, 0.5) 
-265          self.assertEqual(1, self.P.num_datasets()) 
-266          # failed data should not increase num_datasets 
-267          try: 
-268              self.P.read_data(datafile('badNi.dat')) 
-269          except: 
-270              pass 
-271          self.assertEqual(1, self.P.num_datasets()) 
-272          # alloc should increase number of datasets 
-273          # alloc requires a loaded structure 
-274          self.P.read_struct(datafile('Ni.stru')) 
-275          self.P.alloc('X', 30.0, 0.05, 2, 10, 100) 
-276          self.assertEqual(2, self.P.num_datasets()) 
-277          self.P.reset() 
-278          self.assertEqual(0, self.P.num_datasets()) 
-279          return 
-
    280   
-
    281 -    def test_getcrw(self): 
-
    282          """check PdfFit.getcrw() 
-283          """ 
-284          import numpy 
-285          self.assertEqual(0, self.P.num_datasets()) 
-286          # Setting qmax=0 so that partial crw are not disturbed by 
-287          # termination ripples. 
-288          self.P.read_data(datafile('Ni.dat'), 'X', 0.0, 0.0) 
-289          # crw is empty before data refinement 
-290          self.assertEqual([], self.P.getcrw()) 
-291          self.P.read_struct(datafile('Ni.stru')) 
-292          self.P.pdfrange(1, 2, 19) 
-293          self.P.refine() 
-294          crw19 = numpy.array(self.P.getcrw()) 
-295          self.failUnless(numpy.all(crw19 >= 0.0)) 
-296          # check that crw19 is non decreasing 
-297          self.failUnless(numpy.all(numpy.diff(crw19) >= 0.0)) 
-298          # check that crw19 and getrw give the same value 
-299          rw19 = crw19[-1] 
-300          self.assertAlmostEqual(self.P.getrw(), rw19, self.places) 
-301          # renormalize cumulative Rw and compare with Rw at r=15 
-302          Gobs19 = numpy.array(self.P.getpdf_obs()) 
-303          Gnorm19 = numpy.sqrt(numpy.sum(Gobs19**2)) 
-304          r = numpy.array(self.P.getR()) 
-305          idx = numpy.nonzero(r <= 15)[0] 
-306          Gnorm15 = numpy.sqrt(numpy.sum(Gobs19[idx]**2)) 
-307          i15 = idx[-1] 
-308          rw15 = crw19[i15] * Gnorm19 / Gnorm15 
-309          self.P.pdfrange(1, 2, r[i15] + 1e-5) 
-310          self.P.refine() 
-311          self.assertAlmostEqual(self.P.getrw(), rw15, self.places) 
-312          return 
-
    313   
-
    314 -    def test_getcrw_two_datasets(self): 
-
    315          """check that getcrw() and getrw() are consistent for two datasets. 
-316          """ 
-317          self.P.read_data(datafile('Ni.dat'), 'X', 25.0, 0.0) 
-318          self.P.pdfrange(1, 2, 8) 
-319          self.P.read_data(datafile('300K.gr'), 'N', 32.0, 0.0) 
-320          self.P.pdfrange(2, 1, 11) 
-321          self.P.read_struct(datafile('Ni.stru')) 
-322          # mess lattice parameters to have comparable Rw contributions 
-323          self.P.setvar('lat(1)', 3) 
-324          self.P.setvar('lat(2)', 3) 
-325          self.P.setvar('lat(3)', 3) 
-326          self.P.refine() 
-327          rwtot = self.P.getrw() 
-328          self.failUnless(rwtot > 0.0) 
-329          self.P.setdata(1) 
-330          rw1 = self.P.getcrw()[-1] 
-331          self.P.setdata(2) 
-332          rw2 = self.P.getcrw()[-1] 
-333          self.assertAlmostEqual(rwtot**2, rw1**2 + rw2**2, self.places) 
-334          return 
-
    335   
-336  #   def test_getpar(self): 
-337  #       """check PdfFit.getpar() 
-338  #       """ 
-339  #       return 
-340  # 
-341  #   def test_fixpar(self): 
-342  #       """check PdfFit.fixpar() 
-343  #       """ 
-344  #       return 
-345  # 
-346  #   def test_freepar(self): 
-347  #       """check PdfFit.freepar() 
-348  #       """ 
-349  #       return 
-350  # 
-351  #   def test_setphase(self): 
-352  #       """check PdfFit.setphase() 
-353  #       """ 
-354  #       return 
-355  # 
-356  #   def test_setdata(self): 
-357  #       """check PdfFit.setdata() 
-358  #       """ 
-359  #       return 
-360  # 
-
    361 -    def test_psel(self): 
-
    362          """check PdfFit.psel() 
-363          """ 
-364          def doalloc(): 
-365              self.P.alloc('X', 30.0, 0.05, 2, 10, 100) 
-366              return 
-
    367          self.assertRaises(pdffit2.unassignedError, self.P.psel, 0) 
-368          self.assertRaises(pdffit2.unassignedError, self.P.psel, 1) 
-369          self.P.read_struct(datafile('Ni.stru')) 
-370          doalloc() 
-371          self.P.calc() 
-372          G1 = self.P.getpdf_fit() 
-373          self.P.reset() 
-374          self.P.read_struct(datafile('PbScW25TiO3.stru')) 
-375          doalloc() 
-376          self.P.calc() 
-377          G2 = self.P.getpdf_fit() 
-378          self.P.reset() 
-379          self.P.read_struct(datafile('Ni.stru')) 
-380          self.P.read_struct(datafile('PbScW25TiO3.stru')) 
-381          doalloc() 
-382          self.P.pdesel('ALL') 
-383          self.P.psel(1) 
-384          self.P.calc() 
-385          self.assertEqual(G1, self.P.getpdf_fit()) 
-386          self.P.pdesel('ALL') 
-387          self.P.psel(2) 
-388          self.P.calc() 
-389          self.assertEqual(G2, self.P.getpdf_fit()) 
-390          self.P.psel('ALL') 
-391          self.P.calc() 
-392          Gall = self.P.getpdf_fit() 
-393          dGmax = max([abs(g1 + g2 - gall) 
-394              for g1, g2, gall in zip(G1, G2, Gall)]) 
-395          self.assertAlmostEqual(0, dGmax, self.places) 
-396          self.assertRaises(pdffit2.unassignedError, self.P.psel, 10) 
-397          self.assertRaises(pdffit2.unassignedError, self.P.psel, 0) 
-398          self.assertRaises(pdffit2.unassignedError, self.P.psel, -100) 
-399          return 
-
    400   
-
    401 -    def test_pdesel(self): 
-
    402          """check PdfFit.pdesel() 
-403          """ 
-404          def doalloc(): 
-405              self.P.alloc('X', 30.0, 0.05, 2, 10, 100) 
-406              return 
-
    407          self.assertRaises(pdffit2.unassignedError, self.P.pdesel, 0) 
-408          self.assertRaises(pdffit2.unassignedError, self.P.pdesel, 1) 
-409          self.P.read_struct(datafile('Ni.stru')) 
-410          doalloc() 
-411          self.P.calc() 
-412          G1 = self.P.getpdf_fit() 
-413          self.P.reset() 
-414          self.P.read_struct(datafile('PbScW25TiO3.stru')) 
-415          doalloc() 
-416          self.P.calc() 
-417          G2 = self.P.getpdf_fit() 
-418          self.P.reset() 
-419          self.P.read_struct(datafile('Ni.stru')) 
-420          self.P.read_struct(datafile('PbScW25TiO3.stru')) 
-421          doalloc() 
-422          self.P.psel('ALL') 
-423          self.P.pdesel(2) 
-424          self.P.calc() 
-425          self.assertEqual(G1, self.P.getpdf_fit()) 
-426          self.P.psel('ALL') 
-427          self.P.pdesel(1) 
-428          self.P.calc() 
-429          self.assertEqual(G2, self.P.getpdf_fit()) 
-430          self.P.pdesel('ALL') 
-431          self.P.calc() 
-432          G0 = self.P.getpdf_fit() 
-433          self.assertEqual([0.0]*len(G0), G0) 
-434          self.assertRaises(pdffit2.unassignedError, self.P.pdesel, 10) 
-435          self.assertRaises(pdffit2.unassignedError, self.P.pdesel, 0) 
-436          self.assertRaises(pdffit2.unassignedError, self.P.pdesel, -100) 
-437          return 
-438  # 
-439  #   def test_selectAtomType(self): 
-440  #       """check PdfFit.selectAtomType() 
-441  #       """ 
-442  #       return 
-443  # 
-444  #   def test_selectAtomIndex(self): 
-445  #       """check PdfFit.selectAtomIndex() 
-446  #       """ 
-447  #       return 
-448  # 
-449  #   def test_selectAll(self): 
-450  #       """check PdfFit.selectAll() 
-451  #       """ 
-452  #       return 
-453  # 
-454  #   def test_selectNone(self): 
-455  #       """check PdfFit.selectNone() 
-456  #       """ 
-457  #       return 
-458   
-
    459 -    def test_bond_angle(self): 
-
    460          """check PdfFit.bond_angle() 
-461          """ 
-462          self.P.read_struct(datafile('Ni.stru')) 
-463          a, e = self.P.bond_angle(1, 2, 3) 
-464          self.assertAlmostEqual(60.0, a, self.places) 
-465          self.assertRaises(ValueError, self.P.bond_angle, 0, 1, 2) 
-466          self.assertRaises(ValueError, self.P.bond_angle, 1, 2, 7) 
-467          return 
-
    468   
-
    469 -    def test_bond_length_atoms(self): 
-
    470          """check PdfFit.bond_length_atoms() 
-471          """ 
-472          self.P.read_struct(datafile('Ni.stru')) 
-473          self.P.read_struct(datafile('PbScW25TiO3.stru')) 
-474          dij, ddij = self.P.bond_length_atoms(1, 5) 
-475          self.assertAlmostEqual(4.03635, dij, self.places) 
-476          self.P.setphase(1) 
-477          self.assertRaises(ValueError, self.P.bond_length_atoms, 1, 5) 
-478          return 
-
    479   
-
    480 -    def test_bond_length_types(self): 
-
    481          """check PdfFit.bond_length_types() 
-482          """ 
-483          self.P.read_struct(datafile('Ni.stru')) 
-484          self.P.read_struct(datafile('PbScW25TiO3.stru')) 
-485          dPbO = self.P.bond_length_types('Pb', 'O', 0.1, 3.0) 
-486          # check if keys are present 
-487          self.failUnless('dij' in dPbO) 
-488          self.failUnless('ddij' in dPbO) 
-489          self.failUnless('ij0' in dPbO) 
-490          self.failUnless('ij1' in dPbO) 
-491          # check if they have the same length 
-492          npts = len(dPbO['dij']) 
-493          self.assertEqual(npts, len(dPbO['ddij'])) 
-494          self.assertEqual(npts, len(dPbO['ij0'])) 
-495          self.assertEqual(npts, len(dPbO['ij1'])) 
-496          # 8 Pb atoms have coordination 12 in perovskite structure 
-497          self.assertEqual(8*12, len(dPbO['dij'])) 
-498          self.P.setphase(1) 
-499          dfcc = self.P.bond_length_types('ALL', 'ALL', 0.1, 2.6) 
-500          # 4 Ni atoms with coordination 12 
-501          self.assertEqual(4*12, len(dfcc['dij'])) 
-502          # invalid element 
-503          self.assertRaises(ValueError, self.P.bond_length_types, 'Ni', 'Nix', 0.1, 5.0) 
-504          # check indices ij0 
-505          allij0 = sum(dfcc['ij0'], tuple()) 
-506          self.assertEqual(0, min(allij0)) 
-507          self.assertEqual(3, max(allij0)) 
-508          # check indices ij1 
-509          allij1 = sum(dfcc['ij1'], tuple()) 
-510          self.assertEqual(1, min(allij1)) 
-511          self.assertEqual(4, max(allij1)) 
-512          # check index values 
-513          ij0check = [(i1 - 1, j1 - 1) for i1, j1 in dfcc['ij1']] 
-514          self.assertEqual(ij0check, dfcc['ij0']) 
-515          # test valid element which is not present in the structure 
-516          dnone = self.P.bond_length_types('Ni', 'Au', 0.1, 5.0) 
-517          self.assertEqual(0, len(dnone['dij'])) 
-518          self.assertEqual(0, len(dnone['ddij'])) 
-519          self.assertEqual(0, len(dnone['ij0'])) 
-520          self.assertEqual(0, len(dnone['ij1'])) 
-521          return 
-
    522   
-523  #   def test_show_scat(self): 
-524  #       """check PdfFit.show_scat() 
-525  #       """ 
-526  #       return 
-527  # 
-528  #   def test_get_scat_string(self): 
-529  #       """check PdfFit.get_scat_string() 
-530  #       """ 
-531  #       return 
-532   
-
    533 -    def test_get_scat(self): 
-
    534          """check PdfFit.get_scat() 
-535          """ 
-536          # x-ray scattering factors 
-537          fPb = self.P.get_scat('X', 'Pb') 
-538          self.assertEqual(82.0, fPb) 
-539          fTi = self.P.get_scat('X', 'tI') 
-540          self.assertEqual(22.0, fTi) 
-541          # neutron scattering lengths 
-542          bPb = self.P.get_scat('N', 'PB') 
-543          self.assertAlmostEqual(9.401, bPb, 3) 
-544          bTi = self.P.get_scat('N', 'ti') 
-545          self.assertAlmostEqual(-3.370, bTi, 3) 
-546          # exceptions 
-547          self.assertRaises(ValueError, self.P.get_scat, 'N', 'zz') 
-548          self.assertRaises(ValueError, self.P.get_scat, 'Z', 'Ti') 
-549          return 
-
    550   
-
    551 -    def test_set_scat(self): 
-
    552          """check PdfFit.set_scat() 
-553          """ 
-554          # raises exception when no phase exists 
-555          self.assertRaises(pdffit2.unassignedError, 
-556                  self.P.set_scat, 'N', 'Ti', -11) 
-557          # check if it is local to phase 
-558          fPb = self.P.get_scat('X', 'Pb') 
-559          bPb = self.P.get_scat('N', 'Pb') 
-560          self.P.read_struct(datafile('PbScW25TiO3.stru')) 
-561          self.P.set_scat('X', 'Pb', 142) 
-562          self.assertEqual(142, self.P.get_scat('X', 'Pb')) 
-563          self.assertEqual(bPb, self.P.get_scat('N', 'Pb')) 
-564          self.P.read_struct(datafile('PbScW25TiO3.stru')) 
-565          self.assertEqual(fPb, self.P.get_scat('X', 'Pb')) 
-566          self.P.setphase(1) 
-567          self.assertEqual(142, self.P.get_scat('X', 'Pb')) 
-568          self.P.setphase(2) 
-569          self.assertEqual(fPb, self.P.get_scat('X', 'Pb')) 
-570          # check exception for invalid inputs 
-571          self.assertRaises(ValueError, self.P.set_scat, 'Z', 'C', 123) 
-572          self.assertRaises(ValueError, self.P.set_scat, 'X', 'ZZ', 123) 
-573          return 
-
    574   
-
    575 -    def test_reset_scat(self): 
-
    576          """check PdfFit.reset_scat() 
-577          """ 
-578          # raises exception when no phase exists 
-579          self.assertRaises(pdffit2.unassignedError, self.P.reset_scat, 'Ti') 
-580          # check if it is local to phase 
-581          fPb = self.P.get_scat('X', 'Pb') 
-582          bPb = self.P.get_scat('N', 'Pb') 
-583          self.P.read_struct(datafile('PbScW25TiO3.stru')) 
-584          self.P.set_scat('X', 'Pb', 142) 
-585          self.P.read_struct(datafile('PbScW25TiO3.stru')) 
-586          self.P.set_scat('N', 'Pb', -17) 
-587          self.P.setphase(1) 
-588          self.assertNotEqual(fPb, self.P.get_scat('X', 'Pb')) 
-589          self.P.reset_scat('Pb') 
-590          self.assertEqual(fPb, self.P.get_scat('X', 'Pb')) 
-591          self.P.setphase(2) 
-592          self.assertNotEqual(bPb, self.P.get_scat('N', 'Pb')) 
-593          self.P.reset_scat('Pb') 
-594          self.assertEqual(bPb, self.P.get_scat('N', 'Pb')) 
-595          # check exception for invalid inputs 
-596          self.assertRaises(ValueError, self.P.reset_scat, 'Zz') 
-597          return 
-
    598   
-
    599 -    def test_num_atoms(self): 
-
    600          """check PdfFit.num_atoms() 
-601          """ 
-602          self.P.read_struct(datafile('Ni.stru')) 
-603          self.assertEqual(4, self.P.num_atoms()) 
-604          self.P.read_struct(datafile('PbScW25TiO3.stru')) 
-605          self.assertEqual(56, self.P.num_atoms()) 
-606          self.P.setphase(1) 
-607          self.assertEqual(4, self.P.num_atoms()) 
-608          self.P.setphase(2) 
-609          self.assertEqual(56, self.P.num_atoms()) 
-610          return 
-
    611   
-612  #   def test_lat(self): 
-613  #       """check PdfFit.lat() 
-614  #       """ 
-615  #       return 
-616  # 
-617  #   def test_x(self): 
-618  #       """check PdfFit.x() 
-619  #       """ 
-620  #       return 
-621  # 
-622  #   def test_y(self): 
-623  #       """check PdfFit.y() 
-624  #       """ 
-625  #       return 
-626  # 
-627  #   def test_z(self): 
-628  #       """check PdfFit.z() 
-629  #       """ 
-630  #       return 
-631  # 
-632  #   def test_u11(self): 
-633  #       """check PdfFit.u11() 
-634  #       """ 
-635  #       return 
-636  # 
-637  #   def test_u22(self): 
-638  #       """check PdfFit.u22() 
-639  #       """ 
-640  #       return 
-641  # 
-642  #   def test_u33(self): 
-643  #       """check PdfFit.u33() 
-644  #       """ 
-645  #       return 
-646  # 
-647  #   def test_u12(self): 
-648  #       """check PdfFit.u12() 
-649  #       """ 
-650  #       return 
-651  # 
-652  #   def test_u13(self): 
-653  #       """check PdfFit.u13() 
-654  #       """ 
-655  #       return 
-656  # 
-657  #   def test_u23(self): 
-658  #       """check PdfFit.u23() 
-659  #       """ 
-660  #       return 
-661  # 
-662  #   def test_occ(self): 
-663  #       """check PdfFit.occ() 
-664  #       """ 
-665  #       return 
-666  # 
-667  #   def test_pscale(self): 
-668  #       """check PdfFit.pscale() 
-669  #       """ 
-670  #       return 
-671  # 
-672  #   def test_pscale(self): 
-673  #       """check PdfFit.pscale() 
-674  #       """ 
-675  #       return 
-676  # 
-677  #   def test_sratio(self): 
-678  #       """check PdfFit.sratio() 
-679  #       """ 
-680  #       return 
-681  # 
-682  #   def test_delta1(self): 
-683  #       """check PdfFit.delta1() 
-684  #       """ 
-685  #       return 
-686  # 
-687  #   def test_delta2(self): 
-688  #       """check PdfFit.delta2() 
-689  #       """ 
-690  #       return 
-691  # 
-692  #   def test_dscale(self): 
-693  #       """check PdfFit.dscale() 
-694  #       """ 
-695  #       return 
-696  # 
-697  #   def test_qdamp(self): 
-698  #       """check PdfFit.qdamp() 
-699  #       """ 
-700  #       return 
-701  # 
-702  #   def test_qbroad(self): 
-703  #       """check PdfFit.qbroad() 
-704  #       """ 
-705  #       return 
-706  # 
-707  #   def test_rcut(self): 
-708  #       """check PdfFit.rcut() 
-709  #       """ 
-710  #       return 
-711  # 
-712  #   def test___init__(self): 
-713  #       """check PdfFit.__init__() 
-714  #       """ 
-715  #       return 
-716  # 
-717  #   def test__PdfFit__getRef(self): 
-718  #       """check PdfFit._PdfFit__getRef() 
-719  #       """ 
-720  #       return 
-721   
-722  # End of class TestPdfFit 
-723   
-724  if __name__ == '__main__': 
-725      unittest.main() 
-726   
-727  # End of file 
-728   
-
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    diffpy.pdffit2
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    - - - - diff --git a/static_root/doc/pdffit2/diffpy.pdffit2.tests.TestPdfFit.TestPdfFit-class.html b/static_root/doc/pdffit2/diffpy.pdffit2.tests.TestPdfFit.TestPdfFit-class.html deleted file mode 100644 index 8cd26a54..00000000 --- a/static_root/doc/pdffit2/diffpy.pdffit2.tests.TestPdfFit.TestPdfFit-class.html +++ /dev/null @@ -1,1144 +0,0 @@ - - - - - diffpy.pdffit2.tests.TestPdfFit.TestPdfFit - - - - - - - - - - - - - - - - - - - - - - - -
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    - - - - - -
    - - Package diffpy :: - Package pdffit2 :: - Package tests :: - Module TestPdfFit :: - Class TestPdfFit - - - - - - -
    [hide private]
    [frames] | no frames]
    -
    - -

    Class TestPdfFit

    source code

    -
    -            object --+    
-                     |    
-unittest.case.TestCase --+
-                         |
-                        TestPdfFit
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    - - - - - - - - - -
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    Inherited from unittest.case.TestCase: - failureException -

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    setUp(self)
    - Hook method for setting up the test fixture before exercising it.    		 - source code - -
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    tearDown(self)
    - Hook method for deconstructing the test fixture after testing it.    		 - source code - -
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    test_add_structure(self)
    - check PdfFit.add_structure()...    		 - source code - -
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    test_alloc(self)
    - check PdfFit.alloc()...    		 - source code - -
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    test_get_structure(self)
    - check PdfFit.get_structure()...    		 - source code - -
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    test_get_atoms(self)
    - check PdfFit.get_atoms()...    		 - source code - -
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    test_get_atom_types(self)
    - check PdfFit.get_atom_types()...    		 - source code - -
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    test_num_phases(self)
    - check PdfFit.num_phases()...    		 - source code - -
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    test_num_datasets(self)
    - check PdfFit.num_datasets()...    		 - source code - -
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    test_getcrw(self)
    - check PdfFit.getcrw()...    		 - source code - -
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    test_getcrw_two_datasets(self)
    - check that getcrw() and getrw() are consistent for two datasets.    		 - source code - -
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    test_psel(self)
    - check PdfFit.psel()...    		 - source code - -
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    test_pdesel(self)
    - check PdfFit.pdesel()...    		 - source code - -
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    test_bond_angle(self)
    - check PdfFit.bond_angle()...    		 - source code - -
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    test_bond_length_atoms(self)
    - check PdfFit.bond_length_atoms()...    		 - source code - -
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    test_bond_length_types(self)
    - check PdfFit.bond_length_types()...    		 - source code - -
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    test_get_scat(self)
    - check PdfFit.get_scat()...    		 - source code - -
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    test_set_scat(self)
    - check PdfFit.set_scat()...    		 - source code - -
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    test_reset_scat(self)
    - check PdfFit.reset_scat()...    		 - source code - -
    - -
    -   - - - - - - -
    test_num_atoms(self)
    - check PdfFit.num_atoms()...    		 - source code - -
    - -
    -

    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

    -

    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

    -

    Inherited from object: - __delattr__, - __format__, - __getattribute__, - __new__, - __reduce__, - __reduce_ex__, - __setattr__, - __sizeof__, - __subclasshook__ -

    -
    - - - - - - - - - -
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    Class Methods[hide private]
    -
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    Inherited from unittest.case.TestCase: - setUpClass, - tearDownClass -

    -
    - - - - - - - - - - - - -
    - - - - - -
    Class Variables[hide private]
    -
    -   - - places = 6 -
    -

    Inherited from unittest.case.TestCase: - longMessage, - maxDiff -

    -

    Inherited from unittest.case.TestCase (private): - _classSetupFailed, - _diffThreshold -

    -
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    Inherited from object: - __class__ -

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    Method Details[hide private]
    -
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    setUp(self) -

    -     		source code  -
    - - 
    -Hook method for setting up the test fixture before exercising it.
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-
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    -
    Overrides: - unittest.case.TestCase.setUp -
    (inherited documentation)
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    tearDown(self) -

    -     		source code  -
    - - 
    -Hook method for deconstructing the test fixture after testing it.
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    Overrides: - unittest.case.TestCase.tearDown -
    (inherited documentation)
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    test_add_structure(self) -

    -     		source code  -
    - - 
    -check PdfFit.add_structure()
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    test_alloc(self) -

    -     		source code  -
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    test_get_structure(self) -

    -     		source code  -
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    -check PdfFit.get_structure()
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    test_get_atoms(self) -

    -     		source code  -
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    -check PdfFit.get_atoms()
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    test_get_atom_types(self) -

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    -     		source code  -
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    -     		source code  -
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    test_reset_scat(self) -

    -     		source code  -
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    test_num_atoms(self) -

    -     		source code  -
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    -check PdfFit.num_atoms()
-        
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    -
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    - - - - diff --git a/static_root/doc/pdffit2/diffpy.pdffit2.tests.TestPhaseFractions-module.html b/static_root/doc/pdffit2/diffpy.pdffit2.tests.TestPhaseFractions-module.html deleted file mode 100644 index 2141e249..00000000 --- a/static_root/doc/pdffit2/diffpy.pdffit2.tests.TestPhaseFractions-module.html +++ /dev/null @@ -1,176 +0,0 @@ - - - - - diffpy.pdffit2.tests.TestPhaseFractions - - - - - - - - - - - - - - - - - - - - - - - -
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    Module TestPhaseFractions

    source code

    -
    -Unit tests for phase fraction calculations.
-
-
    - - - - - - - - - - -
    - - - - - -
    Classes[hide private]
    -
    -   - - TestPhaseFractions -
    - - - - - - - - - -
    - - - - - -
    Variables[hide private]
    -
    -   - - __package__ = 'diffpy.pdffit2.tests' -
    -

    Imports: - unittest, - PdfFit, - datafile -


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    Source Code for Module diffpy.pdffit2.tests.TestPhaseFractions

    -
    -  1  #!/usr/bin/env python 
-  2   
-  3  """Unit tests for phase fraction calculations. 
-  4  """ 
-  5   
-  6   
-  7  import unittest 
-  8   
-  9  from diffpy.pdffit2 import PdfFit 
- 10  from pdffit2testutils import datafile 
- 11   
- 12  ############################################################################## 
-
     13 -class TestPhaseFractions(unittest.TestCase): 
-
     14   
- 15      places = 4 
- 16   
-
     17 -    def setUp(self): 
-
     18          self.P = PdfFit() 
- 19          self.P.read_struct(datafile('Ni.stru')) 
- 20          self.P.read_struct(datafile('PbScW25TiO3.stru')) 
- 21          self.P.alloc('X', 0.0, 0.05, 0.1, 10, 200) 
- 22          self.P.alloc('N', 0.0, 0.05, 0.1, 10, 200) 
- 23          return 
-
     24   
-
     25 -    def tearDown(self): 
-
     26          del self.P 
- 27          return 
-
     28   
-
     29 -    def test_xray_fractions(self): 
-
     30          """test_xray_fractions -- check phase fractions in x-ray dataset. 
- 31          """ 
- 32          self.P.setdata(1) 
- 33          ph = self.P.phase_fractions() 
- 34          bb1 = 28**2 
- 35          bb2 = ((8*82 + 24*8 + 4*21 + 2*74 + 2*22) / 40.0)**2 
- 36          self.assertAlmostEqual(1.0, sum(ph['atom']), self.places) 
- 37          self.assertAlmostEqual(1.0, sum(ph['cell']), self.places) 
- 38          self.assertAlmostEqual(1.0, sum(ph['mass']), self.places) 
- 39          self.assertAlmostEqual(bb2/bb1, 
- 40                  ph['atom'][0]/ph['atom'][1], self.places) 
- 41          self.assertAlmostEqual(bb2/bb1 * 40.0/4.0, 
- 42                  ph['cell'][0]/ph['cell'][1], self.places) 
- 43          mavg1 = 58.69 
- 44          mavg2 = (8*207.19 + 24*15.994 + 4*44.956 + 2*183.85 + 2*47.90)/40.0 
- 45          self.assertAlmostEqual(bb2/bb1 * mavg1/mavg2, 
- 46                  ph['mass'][0]/ph['mass'][1], self.places) 
- 47          self.assertEqual(0.0, sum(ph['stdatom'])) 
- 48          self.assertEqual(0.0, sum(ph['stdcell'])) 
- 49          self.assertEqual(0.0, sum(ph['stdmass'])) 
- 50          self.P.setphase(1) 
- 51          self.P.setvar('pscale', 2.0) 
- 52          ph2 = self.P.phase_fractions() 
- 53          self.assertAlmostEqual(1.0, sum(ph2['atom']), self.places) 
- 54          self.assertAlmostEqual(1.0, sum(ph2['cell']), self.places) 
- 55          self.assertAlmostEqual(1.0, sum(ph2['mass']), self.places) 
- 56          self.assertAlmostEqual(2.0, ph2['atom'][0]/ph2['atom'][1] / 
- 57                  (ph['atom'][0]/ph['atom'][1]), self.places) 
- 58          self.assertAlmostEqual(2.0, ph2['cell'][0]/ph2['cell'][1] / 
- 59                  (ph['cell'][0]/ph['cell'][1]), self.places) 
- 60          self.assertAlmostEqual(2.0, ph2['mass'][0]/ph2['mass'][1] / 
- 61                  (ph['mass'][0]/ph['mass'][1]), self.places) 
- 62          return 
-
     63   
-
     64 -    def test_neutron_fractions(self): 
-
     65          """test_neutron_fractions -- check phase fractions in neutron dataset. 
- 66          """ 
- 67          self.P.setdata(2) 
- 68          ph = self.P.phase_fractions() 
- 69          bb1 = 10.31**2 
- 70          bPb = 9.4012 
- 71          bO = 5.8054 
- 72          bSc = 12.11 
- 73          bW = 4.75518 
- 74          bTi = -3.37013 
- 75          bb2 = ((8*bPb + 24*bO + 4*bSc + 2*bW + 2*bTi) / 40.0)**2 
- 76          self.assertAlmostEqual(1.0, sum(ph['atom']), self.places) 
- 77          self.assertAlmostEqual(1.0, sum(ph['cell']), self.places) 
- 78          self.assertAlmostEqual(1.0, sum(ph['mass']), self.places) 
- 79          self.assertAlmostEqual(bb2/bb1, 
- 80                  ph['atom'][0]/ph['atom'][1], self.places) 
- 81          self.assertAlmostEqual(bb2/bb1 * 40.0/4.0, 
- 82                  ph['cell'][0]/ph['cell'][1], self.places) 
- 83          mavg1 = 58.69 
- 84          mavg2 = (8*207.19 + 24*15.994 + 4*44.956 + 2*183.85 + 2*47.90)/40.0 
- 85          self.assertAlmostEqual(bb2/bb1 * mavg1/mavg2, 
- 86                  ph['mass'][0]/ph['mass'][1], self.places) 
- 87          self.assertEqual(0.0, sum(ph['stdatom'])) 
- 88          self.assertEqual(0.0, sum(ph['stdcell'])) 
- 89          self.assertEqual(0.0, sum(ph['stdmass'])) 
- 90          self.P.setphase(1) 
- 91          self.P.setvar('pscale', 2.0) 
- 92          ph2 = self.P.phase_fractions() 
- 93          self.assertAlmostEqual(1.0, sum(ph2['atom']), self.places) 
- 94          self.assertAlmostEqual(1.0, sum(ph2['cell']), self.places) 
- 95          self.assertAlmostEqual(1.0, sum(ph2['mass']), self.places) 
- 96          self.assertAlmostEqual(2.0, ph2['atom'][0]/ph2['atom'][1] / 
- 97                  (ph['atom'][0]/ph['atom'][1]), self.places) 
- 98          self.assertAlmostEqual(2.0, ph2['cell'][0]/ph2['cell'][1] / 
- 99                  (ph['cell'][0]/ph['cell'][1]), self.places) 
-100          self.assertAlmostEqual(2.0, ph2['mass'][0]/ph2['mass'][1] / 
-101                  (ph['mass'][0]/ph['mass'][1]), self.places) 
-102          return 
-
    103   
-104  # End of class TestSphereEnvelope 
-105   
-106  if __name__ == '__main__': 
-107      unittest.main() 
-108   
-109  # End of file 
-110   
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    Class TestPhaseFractions

    source code

    -
    -            object --+    
-                     |    
-unittest.case.TestCase --+
-                         |
-                        TestPhaseFractions
-
    - -
    - - - - - - - - - -
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    test_xray_fractions(self)
    - test_xray_fractions -- check phase fractions in x-ray dataset.    		 - source code - -
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    test_neutron_fractions(self)
    - test_neutron_fractions -- check phase fractions in neutron dataset.    		 - source code - -
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    -   - - places = 4 -
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    Module TestShapeFactors

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    -
    -Unit tests for particle shape envelope factors.
-
-
    - - - - - - - - - - - - - -
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    Classes[hide private]
    -
    -   - - TestSphereEnvelope -
    -   - - TestStepCutEnvelope -
    - - - - - - - - - -
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    Functions[hide private]
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    -   - - - - - - -
    spherefactor(r, - d)
    - Calculate spherical envelope correction    		 - source code - -
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    -   - - __package__ = 'diffpy.pdffit2.tests' -
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    Imports: - unittest, - numpy, - PdfFit, - pdffit2, - datafile -


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    spherefactor(r, - d) -

    -     		source code  -
    - - 
    -Calculate spherical envelope correction
-
-r -- PDF radius
-d -- diameter of spherical particle
-
-Return numpy array of shape correction envelope.
-
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    Source Code for Module diffpy.pdffit2.tests.TestShapeFactors

    -
    -  1  #!/usr/bin/env python 
-  2   
-  3  """Unit tests for particle shape envelope factors. 
-  4  """ 
-  5   
-  6   
-  7  import unittest 
-  8  import numpy 
-  9   
- 10  from diffpy.pdffit2 import PdfFit 
- 11  from diffpy.pdffit2 import pdffit2 
- 12  from pdffit2testutils import datafile 
- 13   
- 14   
-
     15 -def spherefactor(r, d): 
-
     16      """Calculate spherical envelope correction 
- 17   
- 18      r -- PDF radius 
- 19      d -- diameter of spherical particle 
- 20   
- 21      Return numpy array of shape correction envelope. 
- 22      """ 
- 23      r1 = numpy.array(r) 
- 24      fsph = 1.0 - 1.5*r1/d + 0.5*(r1/d)**3 
- 25      fsph[r1 > d] = 0.0 
- 26      return fsph 
-
     27   
- 28   
- 29  ############################################################################## 
-
     30 -class TestSphereEnvelope(unittest.TestCase): 
-
     31   
- 32      places = 6 
- 33   
-
     34 -    def setUp(self): 
-
     35          self.P = PdfFit() 
- 36          return 
-
     37   
-
     38 -    def tearDown(self): 
-
     39          self.P = None 
- 40          return 
-
     41   
- 42   
-
     43 -    def test_calculation(self): 
-
     44          """check calculation of sphere envelope factor 
- 45          """ 
- 46          self.P.read_struct(datafile('Ni.stru')) 
- 47          self.P.alloc('X', 0.0, 0.05, 0.1, 10, 200) 
- 48          self.P.calc() 
- 49          d = 8.0 
- 50          r = numpy.array(self.P.getR()) 
- 51          G0 = numpy.array(self.P.getpdf_fit()) 
- 52          self.P.setvar('spdiameter', d) 
- 53          self.P.calc() 
- 54          G1 = numpy.array(self.P.getpdf_fit()) 
- 55          dG = (G0*spherefactor(r, d) - G1) 
- 56          msd = numpy.dot(dG, dG)/len(r) 
- 57          self.assertAlmostEqual(0.0, numpy.sqrt(msd), self.places) 
- 58          return 
-
     59   
- 60   
-
     61 -    def test_refinement(self): 
-
     62          """check refinement of sphere envelope factor 
- 63          """ 
- 64          dcheck = 8.0 
- 65          dstart = 12.0 
- 66          self.P.read_struct(datafile('Ni.stru')) 
- 67          self.P.alloc('X', 0.0, 0.05, 0.1, 10, 200) 
- 68          self.P.setvar('spdiameter', dcheck) 
- 69          self.P.calc() 
- 70          r = numpy.array(self.P.getR()) 
- 71          Gd8 = numpy.array(self.P.getpdf_fit()) 
- 72          Gd8noise = Gd8 
- 73          Gd8noise[::2] += 0.01 
- 74          Gd8noise[1::2] -= 0.01 
- 75          self.P.reset() 
- 76          self.P.read_struct(datafile('Ni.stru')) 
- 77          self.P.read_data_lists('X', 0.0, 0.05, list(r), list(Gd8noise)) 
- 78          self.P.constrain('spdiameter', '@8') 
- 79          self.P.setpar(8, dstart) 
- 80          self.P.refine() 
- 81          dfinal = self.P.getvar('spdiameter') 
- 82          self.assertAlmostEqual(dcheck, dfinal, 3) 
- 83          return 
-
     84   
- 85   
-
     86 -    def test_twophase_calculation(self): 
-
     87          """check PDF calculation for 2 phases with different spdiameters 
- 88          """ 
- 89          d1 = 6 
- 90          d2 = 9 
- 91          self.P.read_struct(datafile('Ni.stru')) 
- 92          self.P.alloc('X', 0.0, 0.05, 0.1, 10, 200) 
- 93          self.P.setvar('spdiameter', d1) 
- 94          self.P.calc() 
- 95          G1 = numpy.array(self.P.getpdf_fit()) 
- 96          self.P.reset() 
- 97          self.P.read_struct(datafile('PbScW25TiO3.stru')) 
- 98          self.P.alloc('X', 0.0, 0.05, 0.1, 10, 200) 
- 99          self.P.setvar('spdiameter', d2) 
-100          self.P.calc() 
-101          G2 = numpy.array(self.P.getpdf_fit()) 
-102          self.P.reset() 
-103          self.P.read_struct(datafile('Ni.stru')) 
-104          self.P.read_struct(datafile('PbScW25TiO3.stru')) 
-105          self.P.alloc('X', 0.0, 0.05, 0.1, 10, 200) 
-106          self.P.setphase(1) 
-107          self.P.setvar('spdiameter', d1) 
-108          self.P.setphase(2) 
-109          self.P.setvar('spdiameter', d2) 
-110          self.P.calc() 
-111          Gtot = numpy.array(self.P.getpdf_fit()) 
-112          dG = (G1 + G2 - Gtot) 
-113          r = numpy.array(self.P.getR()) 
-114          msd = numpy.dot(dG, dG)/len(r) 
-115          self.assertAlmostEqual(0.0, numpy.sqrt(msd), self.places) 
-116          return 
-
    117   
-118   
-
    119 -    def test_twophase_refinement(self): 
-
    120          """check PDF refinement of 2 phases that have different spdiameter. 
-121          """ 
-122          dcheck1 = 8.0 
-123          dstart1 = 8.2 
-124          dcheck2 = 6.0 
-125          dstart2 = 5.5 
-126          self.P.read_struct(datafile('Ni.stru')) 
-127          self.P.alloc('X', 0.0, 0.05, 0.1, 10, 200) 
-128          self.P.setvar('spdiameter', dcheck1) 
-129          self.P.calc() 
-130          G1 = numpy.array(self.P.getpdf_fit()) 
-131          self.P.reset() 
-132          self.P.read_struct(datafile('PbScW25TiO3.stru')) 
-133          self.P.alloc('X', 0.0, 0.05, 0.1, 10, 200) 
-134          self.P.setvar('spdiameter', dcheck2) 
-135          self.P.calc() 
-136          G2 = numpy.array(self.P.getpdf_fit()) 
-137          r = numpy.array(self.P.getR()) 
-138          Gnoise = G1 + G2 
-139          Gnoise[::2] += 0.01 
-140          Gnoise[1::2] -= 0.01 
-141          self.P.reset() 
-142          self.P.read_struct(datafile('Ni.stru')) 
-143          self.P.read_struct(datafile('PbScW25TiO3.stru')) 
-144          self.P.read_data_lists('X', 0.0, 0.05, list(r), list(Gnoise)) 
-145          self.P.setphase(1) 
-146          self.P.constrain('spdiameter', '@11') 
-147          self.P.setphase(2) 
-148          self.P.constrain('spdiameter', '@12') 
-149          self.P.setpar(11, dstart1) 
-150          self.P.setpar(12, dstart2) 
-151          self.P.refine() 
-152          dfinal2 = self.P.getvar('spdiameter') 
-153          self.P.setphase(1) 
-154          dfinal1 = self.P.getvar('spdiameter') 
-155          self.assertAlmostEqual(dcheck1, dfinal1, 3) 
-156          self.assertAlmostEqual(dcheck2, dfinal2, 3) 
-157          return 
-
    158   
-159   
-
    160 -    def test_spdiameter_io(self): 
-
    161          """Check reading and writing of spdiameter from structure file. 
-162          """ 
-163          import re 
-164          self.P.read_struct(datafile('Ni.stru')) 
-165          self.assertEqual(0.0, self.P.getvar('spdiameter')) 
-166          # engine should not write shape factor when not defined 
-167          spdnone = self.P.save_struct_string(1) 
-168          self.failUnless(not re.search('(?m)^shape +sphere,', spdnone)) 
-169          self.P.setvar('spdiameter', 7) 
-170          spd7 = self.P.save_struct_string(1) 
-171          # spd7 should contain shape factor data 
-172          self.failUnless(re.search('(?m)^shape +sphere,', spd7)) 
-173          self.P.reset() 
-174          self.P.read_struct_string(spd7) 
-175          self.assertEqual(7.0, self.P.getvar('spdiameter')) 
-176          # try to read without comma 
-177          spd14 = re.sub('(?m)^shape +sphere.*$', 'shape sphere 14.00', spd7) 
-178          self.P.read_struct_string(spd14) 
-179          self.assertEqual(14.0, self.P.getvar('spdiameter')) 
-180          # try to read invalid shape data 
-181          sinvalid = re.sub('(?m)^shape .*', 'shape invalid, 1', spd7) 
-182          self.assertRaises(pdffit2.structureError, 
-183                  self.P.read_struct_string, sinvalid) 
-184          return 
-
    185   
-186   
-187  # End of class TestSphereEnvelope 
-188   
-189   
-190  ############################################################################## 
-
    191 -class TestStepCutEnvelope(unittest.TestCase): 
-
    192   
-193      places = 6 
-194   
-
    195 -    def setUp(self): 
-
    196          self.P = PdfFit() 
-197          return 
-
    198   
-
    199 -    def tearDown(self): 
-
    200          self.P = None 
-201          return 
-
    202   
-203   
-
    204 -    def test_stepcut_calculation(self): 
-
    205          """check calculation of sphere envelope factor 
-206          """ 
-207          self.P.read_struct(datafile('Ni.stru')) 
-208          self.P.alloc('X', 0.0, 0.05, 0.1, 10, 200) 
-209          self.P.calc() 
-210          stepcut = 8.0 
-211          r = numpy.array(self.P.getR()) 
-212          G0 = numpy.array(self.P.getpdf_fit()) 
-213          G0[r > stepcut] = 0.0 
-214          self.P.setvar('stepcut', stepcut) 
-215          self.P.calc() 
-216          G1 = numpy.array(self.P.getpdf_fit()) 
-217          dG = (G0 - G1) 
-218          msd = numpy.dot(dG, dG)/len(r) 
-219          self.assertAlmostEqual(0.0, numpy.sqrt(msd), self.places) 
-220          return 
-
    221   
-222   
-
    224          """check PDF calculation for 2 phases with different spdiameters 
-225          """ 
-226          d1 = 6 
-227          d2 = 9 
-228          self.P.read_struct(datafile('Ni.stru')) 
-229          self.P.alloc('X', 0.0, 0.05, 0.1, 10, 200) 
-230          self.P.setvar('stepcut', d1) 
-231          self.P.calc() 
-232          G1 = numpy.array(self.P.getpdf_fit()) 
-233          self.P.reset() 
-234          self.P.read_struct(datafile('PbScW25TiO3.stru')) 
-235          self.P.alloc('X', 0.0, 0.05, 0.1, 10, 200) 
-236          self.P.setvar('stepcut', d2) 
-237          self.P.calc() 
-238          G2 = numpy.array(self.P.getpdf_fit()) 
-239          self.P.reset() 
-240          self.P.read_struct(datafile('Ni.stru')) 
-241          self.P.read_struct(datafile('PbScW25TiO3.stru')) 
-242          self.P.alloc('X', 0.0, 0.05, 0.1, 10, 200) 
-243          self.P.setphase(1) 
-244          self.P.setvar('stepcut', d1) 
-245          self.P.setphase(2) 
-246          self.P.setvar('stepcut', d2) 
-247          self.P.calc() 
-248          Gtot = numpy.array(self.P.getpdf_fit()) 
-249          dG = (G1 + G2 - Gtot) 
-250          r = numpy.array(self.P.getR()) 
-251          msd = numpy.dot(dG, dG)/len(r) 
-252          self.assertAlmostEqual(0.0, numpy.sqrt(msd), self.places) 
-253          # G after step should be zero 
-254          self.failUnless(numpy.all(0 == Gtot[r > max(d1, d2)])) 
-255          return 
-
    256   
-257   
-
    258 -    def test_stepcut_io(self): 
-
    259          """Check reading and writing of stepcut from structure file. 
-260          """ 
-261          import re 
-262          self.P.read_struct(datafile('Ni.stru')) 
-263          self.assertEqual(0.0, self.P.getvar('stepcut')) 
-264          # engine should not write shape factor when not defined 
-265          sscnone = self.P.save_struct_string(1) 
-266          self.failUnless(not re.search('(?m)^shape +stepcut,', sscnone)) 
-267          self.P.setvar('stepcut', 7) 
-268          ssc7 = self.P.save_struct_string(1) 
-269          # ssc7 should contain shape factor data 
-270          self.failUnless(re.search('(?m)^shape +stepcut,', ssc7)) 
-271          self.P.reset() 
-272          self.P.read_struct_string(ssc7) 
-273          self.assertEqual(7.0, self.P.getvar('stepcut')) 
-274          # try to read without comma 
-275          ssc14 = re.sub('(?m)^shape +stepcut.*$', 'shape stepcut 14.00', ssc7) 
-276          self.P.read_struct_string(ssc14) 
-277          self.assertEqual(14.0, self.P.getvar('stepcut')) 
-278          # try to read invalid shape data 
-279          sinvalid = re.sub('(?m)^shape .*', 'shape invalid, 1', ssc7) 
-280          self.assertRaises(pdffit2.structureError, 
-281                  self.P.read_struct_string, sinvalid) 
-282          return 
-
    283   
-284   
-285  # End of class TestStepCutEnvelope 
-286   
-287  if __name__ == '__main__': 
-288      unittest.main() 
-289   
-290  # End of file 
-291   
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    Class TestSphereEnvelope

    source code

    -
    -            object --+    
-                     |    
-unittest.case.TestCase --+
-                         |
-                        TestSphereEnvelope
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    Inherited from unittest.case.TestCase: - failureException -

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    - Hook method for deconstructing the test fixture after testing it.    		 - source code - -
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    test_calculation(self)
    - check calculation of sphere envelope factor...    		 - source code - -
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    test_refinement(self)
    - check refinement of sphere envelope factor...    		 - source code - -
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    test_twophase_calculation(self)
    - check PDF calculation for 2 phases with different spdiameters...    		 - source code - -
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    test_twophase_refinement(self)
    - check PDF refinement of 2 phases that have different spdiameter.    		 - source code - -
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    - Check reading and writing of spdiameter from structure file.    		 - source code - -
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    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

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    -check calculation of sphere envelope factor
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    -check refinement of sphere envelope factor
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    test_twophase_calculation(self) -

    -     		source code  -
    - - 
    -check PDF calculation for 2 phases with different spdiameters
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    Class TestStepCutEnvelope

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    -
    -            object --+    
-                     |    
-unittest.case.TestCase --+
-                         |
-                        TestStepCutEnvelope
-
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    test_stepcut_calculation(self)
    - check calculation of sphere envelope factor...    		 - source code - -
    - -
    -   - - - - - - -
    test_twophase_stepcut_calculation(self)
    - check PDF calculation for 2 phases with different spdiameters...    		 - source code - -
    - -
    -   - - - - - - -
    test_stepcut_io(self)
    - Check reading and writing of stepcut from structure file.    		 - source code - -
    - -
    -

    Inherited from unittest.case.TestCase: - __call__, - __eq__, - __hash__, - __init__, - __ne__, - __repr__, - __str__, - addCleanup, - addTypeEqualityFunc, - assertAlmostEqual, - assertAlmostEquals, - assertDictContainsSubset, - assertDictEqual, - assertEqual, - assertEquals, - assertFalse, - assertGreater, - assertGreaterEqual, - assertIn, - assertIs, - assertIsInstance, - assertIsNone, - assertIsNot, - assertIsNotNone, - assertItemsEqual, - assertLess, - assertLessEqual, - assertListEqual, - assertMultiLineEqual, - assertNotAlmostEqual, - assertNotAlmostEquals, - assertNotEqual, - assertNotEquals, - assertNotIn, - assertNotIsInstance, - assertNotRegexpMatches, - assertRaises, - assertRaisesRegexp, - assertRegexpMatches, - assertSequenceEqual, - assertSetEqual, - assertTrue, - assertTupleEqual, - assert_, - countTestCases, - debug, - defaultTestResult, - doCleanups, - fail, - failIf, - failIfAlmostEqual, - failIfEqual, - failUnless, - failUnlessAlmostEqual, - failUnlessEqual, - failUnlessRaises, - id, - run, - shortDescription, - skipTest -

    -

    Inherited from unittest.case.TestCase (private): - _addSkip, - _baseAssertEqual, - _deprecate, - _formatMessage, - _getAssertEqualityFunc, - _truncateMessage -

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    Overrides: - unittest.case.TestCase.setUp -
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    -     		source code  -
    - - 
    -check calculation of sphere envelope factor
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    -     		source code  -
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    -check PDF calculation for 2 phases with different spdiameters
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    - 1  #!/usr/bin/env python 
- 2  ############################################################################## 
- 3  # 
- 4  # diffpy.srreal     by DANSE Diffraction group 
- 5  #                   Simon J. L. Billinge 
- 6  #                   (c) 2010 Trustees of the Columbia University 
- 7  #                   in the City of New York.  All rights reserved. 
- 8  # 
- 9  # File coded by:    Pavol Juhas 
-10  # 
-11  # See AUTHORS.txt for a list of people who contributed. 
-12  # See LICENSE.txt for license information. 
-13  # 
-14  ############################################################################## 
-15   
-16  """Helper routines for running other unit tests. 
-17  Import of this module suppresses the chatty output from the C++ extension. 
-18  """ 
-19   
-20   
-21  import os.path 
-22  import diffpy.pdffit2 
-23   
-24  # silence the C++ engine output 
-25  diffpy.pdffit2.redirect_stdout(open(os.path.devnull, 'w')) 
-26   
-27  # path variables 
-28  thisfile = locals().get('__file__', 'file.py') 
-29  tests_dir = os.path.dirname(os.path.abspath(thisfile)) 
-30  testdata_dir = os.path.join(tests_dir, 'testdata') 
-31   
-
    32 -def datafile(filename): 
-
    33      """prepend testdata_dir to filename. 
-34      """ 
-35      return os.path.join(testdata_dir, filename) 
-
    36   
-37  # End of file 
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    - 1  #!/usr/bin/env python 
- 2  ############################################################################## 
- 3  # 
- 4  # diffpy.pdffit2    by DANSE Diffraction group 
- 5  #                   Simon J. L. Billinge 
- 6  #                   (c) 2012 Trustees of the Columbia University 
- 7  #                   in the City of New York.  All rights reserved. 
- 8  # 
- 9  # File coded by:    Pavol Juhas 
-10  # 
-11  # See AUTHORS.txt for a list of people who contributed. 
-12  # See LICENSE.txt for license information. 
-13  # 
-14  ############################################################################## 
-15   
-16  """Convenience module for executing all unit tests with 
-17   
-18  python -m diffpy.pdffit2.tests.run 
-19  """ 
-20   
-21   
-22  if __name__ == '__main__': 
-23      import sys 
-24      from diffpy.pdffit2.tests import test 
-25      # produce zero exit code for a successful test 
-26      sys.exit(not test().wasSuccessful()) 
-27   
-28  # End of file 
-29   
-
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    Module rundeps

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    -
    -Convenience module for executing unit tests for all pdffit2 dependencies
-
-python -m diffpy.pdffit2.tests.rundeps
-
-
    - - - - - - - - - - -
    - - - - - -
    Variables[hide private]
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    -   - - __package__ = None -
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    -
    - 1  #!/usr/bin/env python 
- 2  ############################################################################## 
- 3  # 
- 4  # diffpy.pdffit2    by DANSE Diffraction group 
- 5  #                   Simon J. L. Billinge 
- 6  #                   (c) 2012 Trustees of the Columbia University 
- 7  #                   in the City of New York.  All rights reserved. 
- 8  # 
- 9  # File coded by:    Pavol Juhas 
-10  # 
-11  # See AUTHORS.txt for a list of people who contributed. 
-12  # See LICENSE.txt for license information. 
-13  # 
-14  ############################################################################## 
-15   
-16  """Convenience module for executing unit tests for all pdffit2 dependencies 
-17   
-18  python -m diffpy.pdffit2.tests.rundeps 
-19  """ 
-20   
-21   
-22  if __name__ == '__main__': 
-23      import sys 
-24      from diffpy.pdffit2.tests import testdeps 
-25      # produce zero exit code for a successful test 
-26      sys.exit(not testdeps().wasSuccessful()) 
-27   
-28  # End of file 
-29   
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    Module version

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    -Definition of __version__, __date__, __gitsha__.
-
-
    - -
    -

    Version: - 1.1 -

    -

    Date: - 2016-02-23 15:21:36 -0500 -

    -
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    Variables[hide private]
    -
    -   - - __gitsha__ = '6e6f443adc884c6f8debde963d10829f5c5c325e' -
    -   - - __timestamp__ = 1456258896 -
    -   - - __package__ = 'diffpy.pdffit2' -
    -

    Imports: - resource_filename, - RawConfigParser, - warn -


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    Source Code for Module diffpy.pdffit2.version

    -
    - 1  #!/usr/bin/env python 
- 2  ############################################################################## 
- 3  # 
- 4  # pdffit2           by DANSE Diffraction group 
- 5  #                   Simon J. L. Billinge 
- 6  #                   (c) 2008 trustees of the Michigan State University. 
- 7  #                   All rights reserved. 
- 8  # 
- 9  # File coded by:    Pavol Juhas 
-10  # 
-11  # See AUTHORS.txt for a list of people who contributed. 
-12  # See LICENSE.txt for license information. 
-13  # 
-14  ############################################################################## 
-15   
-16   
-17  """Definition of __version__, __date__, __gitsha__. 
-18  """ 
-19   
-20  from pkg_resources import resource_filename 
-21  from ConfigParser import RawConfigParser 
-22   
-23  # obtain version information from the version.cfg file 
-24  cp = RawConfigParser(dict(version='', date='', commit='', timestamp=0)) 
-25  if not cp.read(resource_filename(__name__, 'version.cfg')): 
-26      from warnings import warn 
-27      warn('Package metadata not found, execute "./setup.py egg_info".') 
-28   
-29  __version__ = cp.get('DEFAULT', 'version') 
-30  __date__ = cp.get('DEFAULT', 'date') 
-31  __gitsha__ = cp.get('DEFAULT', 'commit') 
-32  __timestamp__ = cp.getint('DEFAULT', 'timestamp') 
-33   
-34  del cp 
-35   
-36  # End of file 
-37   
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The 'nomargin' class is used to remove both the - * top and bottom margin (but not the left or right margin -- - * for lists, that would cause the bullets to disappear.) - */ -p.indent-wrapped-lines { padding: 0 0 0 7em; text-indent: -7em; - margin: 0; } -.nomargin-top { margin-top: 0; } -.nomargin { margin-top: 0; margin-bottom: 0; } - -/* HTML Log */ -div.log-block { padding: 0; margin: .5em 0 .5em 0; - background: #e8f0f8; color: #000000; - border: 1px solid #000000; } -div.log-error { padding: .1em .3em .1em .3em; margin: 4px; - background: #ffb0b0; color: #000000; - border: 1px solid #000000; } -div.log-warning { padding: .1em .3em .1em .3em; margin: 4px; - background: #ffffb0; color: #000000; - border: 1px solid #000000; } -div.log-info { padding: .1em .3em .1em .3em; margin: 4px; - background: #b0ffb0; color: #000000; - border: 1px solid #000000; } -h2.log-hdr { background: #70b0ff; color: #000000; - margin: 0; padding: 0em 0.5em 0em 0.5em; - border-bottom: 1px solid #000000; font-size: 110%; } -p.log { font-weight: bold; margin: .5em 0 .5em 0; } -tr.opt-changed { color: #000000; font-weight: bold; } -tr.opt-default { color: #606060; } -pre.log { margin: 0; padding: 0; padding-left: 1em; } diff --git a/static_root/doc/pdffit2/epydoc.js b/static_root/doc/pdffit2/epydoc.js deleted file mode 100644 index e787dbcf..00000000 --- a/static_root/doc/pdffit2/epydoc.js +++ /dev/null @@ -1,293 +0,0 @@ -function toggle_private() { - // Search for any private/public links on this page. 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    - - - - - -
    - - exceptions :: - AssertionError :: - Class AssertionError - - - - - - -
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    -
    - -

    Class AssertionError

    -
    -   object --+            
-            |            
-BaseException --+        
-                |        
-        Exception --+    
-                    |    
-        StandardError --+
-                        |
-                       AssertionError
-
    - -
    -
    -Assertion failed.
-
-
    - - - - - - - - - - - - - - - - -
    - - - - - -
    Instance Methods[hide private]
    -
    -   - - - - - - -
    __init__(...)
    - x.__init__(...) initializes x; see help(type(x)) for signature    		 - - -
    - -
    - 
    -a new object with type S, a subtype of T
-
-
     -     		- - - - - -
    __new__(T, - S, - ...) - - -
    - -
    -

    Inherited from BaseException: - __delattr__, - __getattribute__, - __getitem__, - __getslice__, - __reduce__, - __repr__, - __setattr__, - __setstate__, - __str__, - __unicode__ -

    -

    Inherited from object: - __format__, - __hash__, - __reduce_ex__, - __sizeof__, - __subclasshook__ -

    -
    - - - - - - - - - -
    - - - - - -
    Properties[hide private]
    -
    -

    Inherited from BaseException: - args, - message -

    -

    Inherited from object: - __class__ -

    -
    - - - - - - -
    - - - - - -
    Method Details[hide private]
    -
    - -
    - -
    - - -
    -

    __init__(...) -
    (Constructor) -

    -     		  -
    - - 
    -x.__init__(...) initializes x; see help(type(x)) for signature
-
-
    -
    -
    Overrides: - object.__init__ -
    -
    -
    -
    - -
    - -
    - - -
    -

    __new__(T, - S, - ...) -

    -     		  -
    - - 
    -
-
-
    -
    -
    Returns: 
    -a new object with type S, a subtype of T
-
-
    -
    Overrides: - object.__new__ -
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    - - - - - -
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    - - - - diff --git a/static_root/doc/pdffit2/frames.html b/static_root/doc/pdffit2/frames.html deleted file mode 100644 index 825795c7..00000000 --- a/static_root/doc/pdffit2/frames.html +++ /dev/null @@ -1,17 +0,0 @@ - - - - - diffpy.pdffit2 - - - - - - - - - diff --git a/static_root/doc/pdffit2/help.html b/static_root/doc/pdffit2/help.html deleted file mode 100644 index 5fa90559..00000000 --- a/static_root/doc/pdffit2/help.html +++ /dev/null @@ -1,278 +0,0 @@ - - - - - Help - - - - - - - - - - - - - - - - - - - - - - - -
       Home      Trees      Indices      Help    - - -
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    - - - - - -
      - - - - -
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    -
    - -

    API Documentation

    - -

    This document contains the API (Application Programming Interface) -documentation for diffpy.pdffit2. Documentation for the Python -objects defined by the project is divided into separate pages for each -package, module, and class. The API documentation also includes two -pages containing information about the project as a whole: a trees -page, and an index page.

    - -

    Object Documentation

    - -

    Each Package Documentation page contains:

    -
      -
    • A description of the package.
      • -
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      • -
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      • -
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      • -
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      • -
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      • -
    • A detailed description of each instance variable defined by the - class.
      • -
    • A detailed description of each class (static) variable defined - by the class.
      • -
    - -

    Project Documentation

    - -

    The Trees page contains the module and class hierarchies:

    -
      -
    • The module hierarchy lists every package and module, with - modules grouped into packages. At the top level, and within each - package, modules and sub-packages are listed alphabetically.
      • -
    • The class hierarchy lists every class, grouped by base - class. If a class has more than one base class, then it will be - listed under each base class. At the top level, and under each base - class, classes are listed alphabetically.
      • -
    - -

    The Index page contains indices of terms and - identifiers:

    -
      -
    • The term index lists every term indexed by any object's - documentation. For each term, the index provides links to each - place where the term is indexed.
      • -
    • The identifier index lists the (short) name of every package, - module, class, method, function, variable, and parameter. For each - identifier, the index provides a short description, and a link to - its documentation.
      • -
    - -

    The Table of Contents

    - -

    The table of contents occupies the two frames on the left side of -the window. The upper-left frame displays the project -contents, and the lower-left frame displays the module -contents:

    - - - - - - - - - -
    - Project
    Contents
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    Documentation
    Frame


    -
    - Module
    Contents
     
    ...
      -

    - -

    The project contents frame contains a list of all packages -and modules that are defined by the project. Clicking on an entry -will display its contents in the module contents frame. Clicking on a -special entry, labeled "Everything," will display the contents of -the entire project.

    - -

    The module contents frame contains a list of every -submodule, class, type, exception, function, and variable defined by a -module or package. Clicking on an entry will display its -documentation in the API documentation frame. Clicking on the name of -the module, at the top of the frame, will display the documentation -for the module itself.

    - -

    The "frames" and "no frames" buttons below the top -navigation bar can be used to control whether the table of contents is -displayed or not.

    - -

    The Navigation Bar

    - -

    A navigation bar is located at the top and bottom of every page. -It indicates what type of page you are currently viewing, and allows -you to go to related pages. The following table describes the labels -on the navigation bar. Note that not some labels (such as -[Parent]) are not displayed on all pages.

    - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    LabelHighlighted when...Links to...
    [Parent](never highlighted) the parent of the current package
    [Package]viewing a packagethe package containing the current object -
    [Module]viewing a modulethe module containing the current object -
    [Class]viewing a class the class containing the current object
    [Trees]viewing the trees page the trees page
    [Index]viewing the index page the index page
    [Help]viewing the help page the help page
    - -

    The "show private" and "hide private" buttons below -the top navigation bar can be used to control whether documentation -for private objects is displayed. Private objects are usually defined -as objects whose (short) names begin with a single underscore, but do -not end with an underscore. For example, "_x", -"__pprint", and "epydoc.epytext._tokenize" -are private objects; but "re.sub", -"__init__", and "type_" are not. However, -if a module defines the "__all__" variable, then its -contents are used to decide which objects are private.

    - -

    A timestamp below the bottom navigation bar indicates when each -page was last updated.

    - - - - - - - - - - - - - - - - - - -
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    - - - - - -
    - Generated by Epydoc 3.0.1 on Tue Feb 23 16:46:55 2016 - - http://epydoc.sourceforge.net -
    - - - - diff --git a/static_root/doc/pdffit2/identifier-index.html b/static_root/doc/pdffit2/identifier-index.html deleted file mode 100644 index e0d9ef32..00000000 --- a/static_root/doc/pdffit2/identifier-index.html +++ /dev/null @@ -1,1468 +0,0 @@ - - - - - Identifier Index - - - - - - - - - - - - - - - - - - - - - - - -
       Home      Trees      Indices      Help    - - -
    diffpy.pdffit2
    - - - - - -
      - - - - -
    [hide private]
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    -
    - -
    -

    Identifier Index

    -    		 -[ - A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - Q - R - S - T - U - V - W - X - Y - Z - _ -] -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

    A

    		 - - - - - - - - - - - -
    add_structure()
    -(in PdfFit)    		alloc()
    -(in diffpy.pdffit2.pdffit2)    		AssertionError
    alloc()
    -(in PdfFit)    		allocExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		 
    -

    B

    		 - - - - - - - - - - - - - - - - - - - - - -
    bang()
    -(in PdfFit)    		bond_angle()
    -(in PdfFit)    		bond_length_types()
    -(in PdfFit)
    bangExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		bond_angle()
    -(in diffpy.pdffit2.pdffit2)    		bond_length_types()
    -(in diffpy.pdffit2.pdffit2)
    blen()
    -(in PdfFit)    		bond_length_atoms()
    -(in PdfFit)    		 
    blenExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		bond_length_atoms()
    -(in diffpy.pdffit2.pdffit2)    		 
    -

    C

    		 - - - - - - - - - - - - - - - - -
    calc()
    -(in PdfFit)    		constrain()
    -(in PdfFit)    		constrainExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)
    calc()
    -(in diffpy.pdffit2.pdffit2)    		constrain_int()
    -(in diffpy.pdffit2.pdffit2)    		copyright()
    -(in diffpy.pdffit2.pdffit2)
    calcExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		constrain_str()
    -(in diffpy.pdffit2.pdffit2)    		create()
    -(in diffpy.pdffit2.pdffit2)
    -

    D

    		 - - - - - - - - - - - - - - - - -
    datafile()
    -(in diffpy.pdffit2.tests.pdffit2testutils)    		delta2()
    -(in PdfFit)    		dscale()
    -(in diffpy.pdffit2.pdffit2)
    delta1()
    -(in PdfFit)    		delta2()
    -(in diffpy.pdffit2.pdffit2)    		 
    delta1()
    -(in diffpy.pdffit2.pdffit2)    		dscale()
    -(in PdfFit)    		 
    -

    E

    		 - - - - - - - -
    EasyPDFPlotting
    -(in diffpy.pdffit2.ipy_ext)    		ExceptionsTest
    -(in diffpy.pdffit2.tests)    		 
       
    -

    F

    		 - - - - - - - - - - - - - - - - -
    FCON
    -(in PdfFit)    		fixparExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		freeparExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)
    fixpar()
    -(in PdfFit)    		freepar()
    -(in PdfFit)    		 
    fixpar()
    -(in diffpy.pdffit2.pdffit2)    		freepar()
    -(in diffpy.pdffit2.pdffit2)    		 
    -

    G

    		 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    Gcalc
    -(in EasyPDFPlotting)    		getcrw()
    -(in PdfFit)    		getpdf_obs()
    -(in PdfFit)
    Gdiff
    -(in EasyPDFPlotting)    		getcrw()
    -(in diffpy.pdffit2.pdffit2)    		getpdf_obs()
    -(in diffpy.pdffit2.pdffit2)
    get_atom_types()
    -(in PdfFit)    		getcrwExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		getpdf_obsExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)
    get_atom_types()
    -(in diffpy.pdffit2.pdffit2)    		getpar()
    -(in PdfFit)    		getR()
    -(in PdfFit)
    get_atoms()
    -(in PdfFit)    		getpar()
    -(in diffpy.pdffit2.pdffit2)    		getR()
    -(in diffpy.pdffit2.pdffit2)
    get_atoms()
    -(in diffpy.pdffit2.pdffit2)    		getparExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		getRExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)
    get_atomsExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		getpdf_diff()
    -(in PdfFit)    		getrw()
    -(in PdfFit)
    get_scat()
    -(in PdfFit)    		getpdf_diff()
    -(in diffpy.pdffit2.pdffit2)    		getrw()
    -(in diffpy.pdffit2.pdffit2)
    get_scat()
    -(in diffpy.pdffit2.pdffit2)    		getpdf_diffExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		getvar()
    -(in PdfFit)
    get_scat_string()
    -(in PdfFit)    		getpdf_fit()
    -(in PdfFit)    		getvar()
    -(in diffpy.pdffit2.pdffit2)
    get_scat_string()
    -(in diffpy.pdffit2.pdffit2)    		getpdf_fit()
    -(in diffpy.pdffit2.pdffit2)    		getvarExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)
    get_structure()
    -(in PdfFit)    		getpdf_fitExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		Gobs
    -(in EasyPDFPlotting)
    -

    I

    		 - - - - - - - -
    intro()
    -(in PdfFit)    		ipy_ext
    -(in diffpy.pdffit2)    		is_element()
    -(in diffpy.pdffit2.pdffit2)
       
    -

    L

    		 - - - - - - - -
    lat()
    -(in PdfFit)    		lat()
    -(in diffpy.pdffit2.pdffit2)    		load_ipython_extension()
    -(in diffpy.pdffit2.ipy_ext)
       
    -

    N

    		 - - - - - - - - - - - - - - - - -
    num_atoms()
    -(in PdfFit)    		num_datasets()
    -(in PdfFit)    		num_phases()
    -(in diffpy.pdffit2.pdffit2)
    num_atoms()
    -(in diffpy.pdffit2.pdffit2)    		num_datasets()
    -(in diffpy.pdffit2.pdffit2)    		 
    num_atomsExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		num_phases()
    -(in PdfFit)    		 
    -

    O

    		 - - - - - - - -
    occ()
    -(in PdfFit)    		occ()
    -(in diffpy.pdffit2.pdffit2)    		output
    -(in diffpy.pdffit2)
       
    -

    P

    		 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    pdesel()
    -(in PdfFit)    		pdfrange()
    -(in PdfFit)    		places
    -(in TestStepCutEnvelope)
    pdesel()
    -(in diffpy.pdffit2.pdffit2)    		pdfrange()
    -(in diffpy.pdffit2.pdffit2)    		pscale()
    -(in PdfFit)
    pdeselExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		pdfrangeExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		pscale()
    -(in diffpy.pdffit2.pdffit2)
    pdffit
    -(in diffpy.pdffit2)    		phase_fractions()
    -(in PdfFit)    		psel()
    -(in PdfFit)
    PdfFit
    -(in diffpy.pdffit2.pdffit)    		phase_fractions()
    -(in diffpy.pdffit2.pdffit2)    		psel()
    -(in diffpy.pdffit2.pdffit2)
    pdffit2
    -(in diffpy)    		places
    -(in TestPdfFit)    		pselExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)
    pdffit2
    -(in diffpy.pdffit2)    		places
    -(in TestPhaseFractions)    		 
    pdffit2testutils
    -(in diffpy.pdffit2.tests)    		places
    -(in TestSphereEnvelope)    		 
    -

    Q

    		 - - - - - - - - - - - -
    qbroad()
    -(in PdfFit)    		qdamp()
    -(in PdfFit)    		 
    qbroad()
    -(in diffpy.pdffit2.pdffit2)    		qdamp()
    -(in diffpy.pdffit2.pdffit2)    		 
    -

    R

    		 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    r
    -(in EasyPDFPlotting)    		read_dataExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		refine_step()
    -(in PdfFit)
    rcut()
    -(in PdfFit)    		read_struct()
    -(in PdfFit)    		refine_step()
    -(in diffpy.pdffit2.pdffit2)
    rcut()
    -(in diffpy.pdffit2.pdffit2)    		read_struct()
    -(in diffpy.pdffit2.pdffit2)    		reset()
    -(in PdfFit)
    read_data()
    -(in PdfFit)    		read_struct_string()
    -(in PdfFit)    		reset()
    -(in diffpy.pdffit2.pdffit2)
    read_data()
    -(in diffpy.pdffit2.pdffit2)    		read_struct_string()
    -(in diffpy.pdffit2.pdffit2)    		reset_scat()
    -(in PdfFit)
    read_data_arrays()
    -(in diffpy.pdffit2.pdffit2)    		read_structExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		reset_scat()
    -(in diffpy.pdffit2.pdffit2)
    read_data_lists()
    -(in PdfFit)    		redirect_stdout()
    -(in diffpy.pdffit2.output)    		run
    -(in diffpy.pdffit2.tests)
    read_data_listsExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		redirect_stdout()
    -(in diffpy.pdffit2.pdffit2)    		rundeps
    -(in diffpy.pdffit2.tests)
    read_data_string()
    -(in PdfFit)    		refine()
    -(in PdfFit)    		 
    read_data_string()
    -(in diffpy.pdffit2.pdffit2)    		refine()
    -(in diffpy.pdffit2.pdffit2)    		 
    -

    S

    		 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    save_dif()
    -(in PdfFit)    		setdata()
    -(in PdfFit)    		setUp()
    -(in save_pdfExceptions)
    save_dif()
    -(in diffpy.pdffit2.pdffit2)    		setdata()
    -(in diffpy.pdffit2.pdffit2)    		setUp()
    -(in save_resExceptions)
    save_dif_string()
    -(in PdfFit)    		setdataExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		setUp()
    -(in save_structExceptions)
    save_difExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		setpar()
    -(in PdfFit)    		setUp()
    -(in selectAllExceptions)
    save_pdf()
    -(in PdfFit)    		setpar_dbl()
    -(in diffpy.pdffit2.pdffit2)    		setUp()
    -(in selectAtomIndexExceptions)
    save_pdf()
    -(in diffpy.pdffit2.pdffit2)    		setpar_RV()
    -(in diffpy.pdffit2.pdffit2)    		setUp()
    -(in selectAtomTypeExceptions)
    save_pdf_string()
    -(in PdfFit)    		setphase()
    -(in PdfFit)    		setUp()
    -(in selectNoneExceptions)
    save_pdfExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		setphase()
    -(in diffpy.pdffit2.pdffit2)    		setUp()
    -(in setdataExceptions)
    save_res()
    -(in PdfFit)    		setphaseExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		setUp()
    -(in setphaseExceptions)
    save_res()
    -(in diffpy.pdffit2.pdffit2)    		setUp()
    -(in allocExceptions)    		setUp()
    -(in setvarExceptions)
    save_res_string()
    -(in PdfFit)    		setUp()
    -(in bangExceptions)    		setUp()
    -(in show_scatExceptions)
    save_resExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		setUp()
    -(in blenExceptions)    		setUp()
    -(in TestPdfFit)
    save_struct()
    -(in PdfFit)    		setUp()
    -(in calcExceptions)    		setUp()
    -(in TestPhaseFractions)
    save_struct()
    -(in diffpy.pdffit2.pdffit2)    		setUp()
    -(in constrainExceptions)    		setUp()
    -(in TestSphereEnvelope)
    save_struct_string()
    -(in PdfFit)    		setUp()
    -(in fixparExceptions)    		setUp()
    -(in TestStepCutEnvelope)
    save_structExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		setUp()
    -(in freeparExceptions)    		setvar()
    -(in PdfFit)
    Sctp
    -(in PdfFit)    		setUp()
    -(in getRExceptions)    		setvar()
    -(in diffpy.pdffit2.pdffit2)
    selalias
    -(in PdfFit)    		setUp()
    -(in get_atomsExceptions)    		setvarExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)
    selectAll()
    -(in PdfFit)    		setUp()
    -(in getcrwExceptions)    		show_scat()
    -(in PdfFit)
    selectAll()
    -(in diffpy.pdffit2.pdffit2)    		setUp()
    -(in getparExceptions)    		show_scatExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)
    selectAllExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		setUp()
    -(in getpdf_diffExceptions)    		show_struct()
    -(in PdfFit)
    selectAtomIndex()
    -(in PdfFit)    		setUp()
    -(in getpdf_fitExceptions)    		show_struct()
    -(in diffpy.pdffit2.pdffit2)
    selectAtomIndex()
    -(in diffpy.pdffit2.pdffit2)    		setUp()
    -(in getpdf_obsExceptions)    		showfit()
    -(in EasyPDFPlotting)
    selectAtomIndexExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		setUp()
    -(in getvarExceptions)    		showRw()
    -(in EasyPDFPlotting)
    selectAtomType()
    -(in PdfFit)    		setUp()
    -(in num_atomsExceptions)    		spdiameter()
    -(in PdfFit)
    selectAtomType()
    -(in diffpy.pdffit2.pdffit2)    		setUp()
    -(in pdeselExceptions)    		spdiameter()
    -(in diffpy.pdffit2.pdffit2)
    selectAtomTypeExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		setUp()
    -(in pdfrangeExceptions)    		spherefactor()
    -(in diffpy.pdffit2.tests.TestShapeFactors)
    selectNone()
    -(in PdfFit)    		setUp()
    -(in pselExceptions)    		sratio()
    -(in PdfFit)
    selectNone()
    -(in diffpy.pdffit2.pdffit2)    		setUp()
    -(in read_dataExceptions)    		sratio()
    -(in diffpy.pdffit2.pdffit2)
    selectNoneExceptions
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		setUp()
    -(in read_data_listsExceptions)    		stepcut()
    -(in PdfFit)
    set_scat()
    -(in PdfFit)    		setUp()
    -(in read_structExceptions)    		stepcut()
    -(in diffpy.pdffit2.pdffit2)
    set_scat()
    -(in diffpy.pdffit2.pdffit2)    		setUp()
    -(in save_difExceptions)    		 
    -

    T

    		 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    tearDown()
    -(in allocExceptions)    		test_get_atoms()
    -(in TestPdfFit)    		test_unassignedError()
    -(in show_scatExceptions)
    tearDown()
    -(in bangExceptions)    		test_get_scat()
    -(in TestPdfFit)    		test_unassignedError1()
    -(in getparExceptions)
    tearDown()
    -(in blenExceptions)    		test_get_structure()
    -(in TestPdfFit)    		test_unassignedError1()
    -(in pdeselExceptions)
    tearDown()
    -(in calcExceptions)    		test_getcrw()
    -(in TestPdfFit)    		test_unassignedError1()
    -(in selectAllExceptions)
    tearDown()
    -(in constrainExceptions)    		test_getcrw_two_datasets()
    -(in TestPdfFit)    		test_unassignedError1()
    -(in selectAtomIndexExceptions)
    tearDown()
    -(in fixparExceptions)    		test_ijcharValueError()
    -(in selectAtomTypeExceptions)    		test_unassignedError1()
    -(in selectAtomTypeExceptions)
    tearDown()
    -(in freeparExceptions)    		test_IOError()
    -(in read_dataExceptions)    		test_unassignedError1()
    -(in selectNoneExceptions)
    tearDown()
    -(in getRExceptions)    		test_IOError()
    -(in read_structExceptions)    		test_unassignedError2()
    -(in getparExceptions)
    tearDown()
    -(in get_atomsExceptions)    		test_IOError()
    -(in save_difExceptions)    		test_unassignedError2()
    -(in pdeselExceptions)
    tearDown()
    -(in getcrwExceptions)    		test_IOError()
    -(in save_pdfExceptions)    		test_unassignedError2()
    -(in pselExceptions)
    tearDown()
    -(in getparExceptions)    		test_IOError()
    -(in save_resExceptions)    		test_unassignedError2()
    -(in selectAllExceptions)
    tearDown()
    -(in getpdf_diffExceptions)    		test_IOError()
    -(in save_structExceptions)    		test_unassignedError2()
    -(in selectAtomIndexExceptions)
    tearDown()
    -(in getpdf_fitExceptions)    		test_neutron_fractions()
    -(in TestPhaseFractions)    		test_unassignedError2()
    -(in selectAtomTypeExceptions)
    tearDown()
    -(in getpdf_obsExceptions)    		test_num_atoms()
    -(in TestPdfFit)    		test_unassignedError2()
    -(in selectNoneExceptions)
    tearDown()
    -(in getvarExceptions)    		test_num_datasets()
    -(in TestPdfFit)    		test_ValueError()
    -(in constrainExceptions)
    tearDown()
    -(in num_atomsExceptions)    		test_num_phases()
    -(in TestPdfFit)    		test_ValueError()
    -(in getvarExceptions)
    tearDown()
    -(in pdeselExceptions)    		test_pdesel()
    -(in TestPdfFit)    		test_ValueError()
    -(in selectAtomIndexExceptions)
    tearDown()
    -(in pdfrangeExceptions)    		test_psel()
    -(in TestPdfFit)    		test_ValueError()
    -(in setvarExceptions)
    tearDown()
    -(in pselExceptions)    		test_refinement()
    -(in TestSphereEnvelope)    		test_ValueError1()
    -(in allocExceptions)
    tearDown()
    -(in read_dataExceptions)    		test_reset_scat()
    -(in TestPdfFit)    		test_ValueError1()
    -(in bangExceptions)
    tearDown()
    -(in read_data_listsExceptions)    		test_set_scat()
    -(in TestPdfFit)    		test_ValueError1()
    -(in blenExceptions)
    tearDown()
    -(in read_structExceptions)    		test_spdiameter_io()
    -(in TestSphereEnvelope)    		test_ValueError1()
    -(in pdfrangeExceptions)
    tearDown()
    -(in save_difExceptions)    		test_stepcut_calculation()
    -(in TestStepCutEnvelope)    		test_ValueError1()
    -(in read_data_listsExceptions)
    tearDown()
    -(in save_pdfExceptions)    		test_stepcut_io()
    -(in TestStepCutEnvelope)    		test_ValueError2()
    -(in allocExceptions)
    tearDown()
    -(in save_resExceptions)    		test_structureError()
    -(in read_structExceptions)    		test_ValueError2()
    -(in bangExceptions)
    tearDown()
    -(in save_structExceptions)    		test_structureErrorZeroVolume()
    -(in read_structExceptions)    		test_ValueError2()
    -(in blenExceptions)
    tearDown()
    -(in selectAllExceptions)    		test_twophase_calculation()
    -(in TestSphereEnvelope)    		test_ValueError2()
    -(in pdfrangeExceptions)
    tearDown()
    -(in selectAtomIndexExceptions)    		test_twophase_refinement()
    -(in TestSphereEnvelope)    		test_ValueError2()
    -(in read_data_listsExceptions)
    tearDown()
    -(in selectAtomTypeExceptions)    		test_twophase_stepcut_calculation()
    -(in TestStepCutEnvelope)    		test_ValueError3()
    -(in allocExceptions)
    tearDown()
    -(in selectNoneExceptions)    		test_unassignedError()
    -(in bangExceptions)    		test_ValueError3()
    -(in bangExceptions)
    tearDown()
    -(in setdataExceptions)    		test_unassignedError()
    -(in blenExceptions)    		test_ValueError3()
    -(in blenExceptions)
    tearDown()
    -(in setphaseExceptions)    		test_unassignedError()
    -(in calcExceptions)    		test_ValueError3()
    -(in pdfrangeExceptions)
    tearDown()
    -(in setvarExceptions)    		test_unassignedError()
    -(in constrainExceptions)    		test_ValueError3()
    -(in read_data_listsExceptions)
    tearDown()
    -(in show_scatExceptions)    		test_unassignedError()
    -(in fixparExceptions)    		test_ValueError4()
    -(in allocExceptions)
    tearDown()
    -(in TestPdfFit)    		test_unassignedError()
    -(in freeparExceptions)    		test_ValueError5()
    -(in allocExceptions)
    tearDown()
    -(in TestPhaseFractions)    		test_unassignedError()
    -(in getRExceptions)    		test_ValueError6()
    -(in allocExceptions)
    tearDown()
    -(in TestSphereEnvelope)    		test_unassignedError()
    -(in get_atomsExceptions)    		test_ValueError7()
    -(in allocExceptions)
    tearDown()
    -(in TestStepCutEnvelope)    		test_unassignedError()
    -(in getcrwExceptions)    		test_xray_fractions()
    -(in TestPhaseFractions)
    test()
    -(in diffpy.pdffit2)    		test_unassignedError()
    -(in getpdf_diffExceptions)    		testdata_dir
    -(in diffpy.pdffit2.tests.pdffit2testutils)
    test()
    -(in diffpy.pdffit2.tests)    		test_unassignedError()
    -(in getpdf_fitExceptions)    		testdeps()
    -(in diffpy.pdffit2.tests)
    test_add_structure()
    -(in TestPdfFit)    		test_unassignedError()
    -(in getpdf_obsExceptions)    		TestPdfFit
    -(in diffpy.pdffit2.tests)
    test_alloc()
    -(in TestPdfFit)    		test_unassignedError()
    -(in getvarExceptions)    		TestPdfFit
    -(in diffpy.pdffit2.tests.TestPdfFit)
    test_bond_angle()
    -(in TestPdfFit)    		test_unassignedError()
    -(in num_atomsExceptions)    		TestPhaseFractions
    -(in diffpy.pdffit2.tests)
    test_bond_length_atoms()
    -(in TestPdfFit)    		test_unassignedError()
    -(in pselExceptions)    		TestPhaseFractions
    -(in diffpy.pdffit2.tests.TestPhaseFractions)
    test_bond_length_types()
    -(in TestPdfFit)    		test_unassignedError()
    -(in save_difExceptions)    		tests
    -(in diffpy.pdffit2)
    test_calculation()
    -(in TestSphereEnvelope)    		test_unassignedError()
    -(in save_pdfExceptions)    		tests_dir
    -(in diffpy.pdffit2.tests.pdffit2testutils)
    test_constrainNonRefVar()
    -(in constrainExceptions)    		test_unassignedError()
    -(in save_resExceptions)    		TestShapeFactors
    -(in diffpy.pdffit2.tests)
    test_constraintError()
    -(in constrainExceptions)    		test_unassignedError()
    -(in save_structExceptions)    		TestSphereEnvelope
    -(in diffpy.pdffit2.tests.TestShapeFactors)
    test_dataError()
    -(in read_dataExceptions)    		test_unassignedError()
    -(in setdataExceptions)    		TestStepCutEnvelope
    -(in diffpy.pdffit2.tests.TestShapeFactors)
    test_dataError()
    -(in read_data_listsExceptions)    		test_unassignedError()
    -(in setphaseExceptions)    		testsuite()
    -(in diffpy.pdffit2.tests)
    test_get_atom_types()
    -(in TestPdfFit)    		test_unassignedError()
    -(in setvarExceptions)    		thisfile
    -(in diffpy.pdffit2.tests.pdffit2testutils)
    -

    U

    		 - - - - - - - - - - - - - - - - - - - - - -
    u11()
    -(in PdfFit)    		u13()
    -(in PdfFit)    		u23()
    -(in PdfFit)
    u11()
    -(in diffpy.pdffit2.pdffit2)    		u13()
    -(in diffpy.pdffit2.pdffit2)    		u23()
    -(in diffpy.pdffit2.pdffit2)
    u12()
    -(in PdfFit)    		u22()
    -(in PdfFit)    		u33()
    -(in PdfFit)
    u12()
    -(in diffpy.pdffit2.pdffit2)    		u22()
    -(in diffpy.pdffit2.pdffit2)    		u33()
    -(in diffpy.pdffit2.pdffit2)
    -

    V

    		 - - - - - - - -
    version
    -(in diffpy.pdffit2)    		  
       
    -

    X

    		 - - - - - - - -
    x()
    -(in PdfFit)    		x()
    -(in diffpy.pdffit2.pdffit2)    		 
       
    -

    Y

    		 - - - - - - - -
    y()
    -(in PdfFit)    		y()
    -(in diffpy.pdffit2.pdffit2)    		 
       
    -

    Z

    		 - - - - - - - -
    z()
    -(in PdfFit)    		z()
    -(in diffpy.pdffit2.pdffit2)    		 
       
    -

    _

    		 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    __getRef()
    -(in PdfFit)    		__package__
    -(in diffpy.pdffit2.pdffit2)    		__package__
    -(in diffpy.pdffit2.version)
    __gitsha__
    -(in diffpy.pdffit2.version)    		__package__
    -(in diffpy.pdffit2.tests.ExceptionsTest)    		__timestamp__
    -(in diffpy.pdffit2.version)
    __init__()
    -(in EasyPDFPlotting)    		__package__
    -(in diffpy.pdffit2.tests.TestPdfFit)    		_asarray()
    -(in EasyPDFPlotting)
    __init__()
    -(in PdfFit)    		__package__
    -(in diffpy.pdffit2.tests.TestPhaseFractions)    		_convertCallable()
    -(in diffpy.pdffit2.pdffit)
    __intro_message__
    -(in diffpy.pdffit2.pdffit)    		__package__
    -(in diffpy.pdffit2.tests.TestShapeFactors)    		_exportAll()
    -(in PdfFit)
    __package__
    -(in diffpy.pdffit2)    		__package__
    -(in diffpy.pdffit2.tests)    		_format_bond_length()
    -(in diffpy.pdffit2.pdffit)
    __package__
    -(in diffpy.pdffit2.ipy_ext)    		__package__
    -(in diffpy.pdffit2.tests.pdffit2testutils)    		_format_value_std()
    -(in diffpy.pdffit2.pdffit)
    __package__
    -(in diffpy.pdffit2.output)    		__package__
    -(in diffpy.pdffit2.tests.run)    		 
    __package__
    -(in diffpy.pdffit2.pdffit)    		__package__
    -(in diffpy.pdffit2.tests.rundeps)    		 
    -
    -

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    Module Hierarchy

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    diffpy.pdffit2
    - - - - - -
    - Generated by Epydoc 3.0.1 on Tue Feb 23 16:46:55 2016 - - http://epydoc.sourceforge.net -
    - - - - diff --git a/static_root/doc/pdffit2/redirect.html b/static_root/doc/pdffit2/redirect.html deleted file mode 100644 index f3828106..00000000 --- a/static_root/doc/pdffit2/redirect.html +++ /dev/null @@ -1,38 +0,0 @@ -Epydoc Redirect Page - - - - - - - - -

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    - - - - - diff --git a/static_root/doc/pdffit2/toc-diffpy.pdffit2-module.html b/static_root/doc/pdffit2/toc-diffpy.pdffit2-module.html deleted file mode 100644 index 81113fda..00000000 --- a/static_root/doc/pdffit2/toc-diffpy.pdffit2-module.html +++ /dev/null @@ -1,33 +0,0 @@ - - - - - pdffit2 - - - - - -

    Module pdffit2

    -
    -

    Functions

    - test

    Variables

    - __package__
    -[hide private] - - - - diff --git a/static_root/doc/pdffit2/toc-diffpy.pdffit2.ipy_ext-module.html b/static_root/doc/pdffit2/toc-diffpy.pdffit2.ipy_ext-module.html deleted file mode 100644 index a2c0e891..00000000 --- a/static_root/doc/pdffit2/toc-diffpy.pdffit2.ipy_ext-module.html +++ /dev/null @@ -1,35 +0,0 @@ - - - - - ipy_ext - - - - - -

    Module ipy_ext

    -
    -

    Classes

    - EasyPDFPlotting

    Functions

    - load_ipython_extension

    Variables

    - __package__
    -[hide private] - - - - diff --git a/static_root/doc/pdffit2/toc-diffpy.pdffit2.output-module.html b/static_root/doc/pdffit2/toc-diffpy.pdffit2.output-module.html deleted file mode 100644 index c9487c93..00000000 --- a/static_root/doc/pdffit2/toc-diffpy.pdffit2.output-module.html +++ /dev/null @@ -1,33 +0,0 @@ - - - - - output - - - - - -

    Module output

    -
    -

    Functions

    - redirect_stdout

    Variables

    - __package__
    -[hide private] - - - - diff --git a/static_root/doc/pdffit2/toc-diffpy.pdffit2.pdffit-module.html b/static_root/doc/pdffit2/toc-diffpy.pdffit2.pdffit-module.html deleted file mode 100644 index 6431648a..00000000 --- a/static_root/doc/pdffit2/toc-diffpy.pdffit2.pdffit-module.html +++ /dev/null @@ -1,44 +0,0 @@ - - - - - pdffit - - - - - -

    Module pdffit

    -
    -

    Classes

    - PdfFit

    Functions

    -
    - _convertCallable
    -
    - _format_bond_length
    -
    - _format_value_std
    -

    Variables

    - __intro_message__
    __package__
    -[hide private] - - - - diff --git a/static_root/doc/pdffit2/toc-diffpy.pdffit2.pdffit2-module.html b/static_root/doc/pdffit2/toc-diffpy.pdffit2.pdffit2-module.html deleted file mode 100644 index 61896946..00000000 --- a/static_root/doc/pdffit2/toc-diffpy.pdffit2.pdffit2-module.html +++ /dev/null @@ -1,109 +0,0 @@ - - - - - pdffit2 - - - - - -

    Module pdffit2

    -
    -

    Functions

    - alloc
    bond_angle
    bond_length_atoms
    bond_length_types
    calc
    constrain_int
    constrain_str
    copyright
    create
    delta1
    delta2
    dscale
    fixpar
    freepar
    getR
    get_atom_types
    get_atoms
    get_scat
    get_scat_string
    getcrw
    getpar
    getpdf_diff
    getpdf_fit
    getpdf_obs
    getrw
    getvar
    is_element
    lat
    num_atoms
    num_datasets
    num_phases
    occ
    pdesel
    pdfrange
    phase_fractions
    pscale
    psel
    qbroad
    qdamp
    rcut
    read_data
    read_data_arrays
    read_data_string
    read_struct
    read_struct_string
    redirect_stdout
    refine
    refine_step
    reset
    reset_scat
    save_dif
    save_pdf
    save_res
    save_struct
    selectAll
    selectAtomIndex
    selectAtomType
    selectNone
    set_scat
    setdata
    setpar_RV
    setpar_dbl
    setphase
    setvar
    show_struct
    spdiameter
    sratio
    stepcut
    u11
    u12
    u13
    u22
    u23
    u33
    x
    y
    z

    Variables

    - __package__
    -[hide private] - - - - diff --git a/static_root/doc/pdffit2/toc-diffpy.pdffit2.tests-module.html b/static_root/doc/pdffit2/toc-diffpy.pdffit2.tests-module.html deleted file mode 100644 index 18328086..00000000 --- a/static_root/doc/pdffit2/toc-diffpy.pdffit2.tests-module.html +++ /dev/null @@ -1,35 +0,0 @@ - - - - - tests - - - - - -

    Module tests

    -
    -

    Functions

    - test
    testdeps
    testsuite

    Variables

    - __package__
    -[hide private] - - - - diff --git a/static_root/doc/pdffit2/toc-diffpy.pdffit2.tests.ExceptionsTest-module.html b/static_root/doc/pdffit2/toc-diffpy.pdffit2.tests.ExceptionsTest-module.html deleted file mode 100644 index 5fb97e4f..00000000 --- a/static_root/doc/pdffit2/toc-diffpy.pdffit2.tests.ExceptionsTest-module.html +++ /dev/null @@ -1,66 +0,0 @@ - - - - - ExceptionsTest - - - - - -

    Module ExceptionsTest

    -
    -

    Classes

    - allocExceptions
    bangExceptions
    blenExceptions
    calcExceptions
    constrainExceptions
    fixparExceptions
    freeparExceptions
    getRExceptions
    get_atomsExceptions
    getcrwExceptions
    getparExceptions
    getpdf_diffExceptions
    getpdf_fitExceptions
    getpdf_obsExceptions
    getvarExceptions
    num_atomsExceptions
    pdeselExceptions
    pdfrangeExceptions
    pselExceptions
    read_dataExceptions
    read_data_listsExceptions
    read_structExceptions
    save_difExceptions
    save_pdfExceptions
    save_resExceptions
    save_structExceptions
    selectAllExceptions
    selectAtomIndexExceptions
    selectAtomTypeExceptions
    selectNoneExceptions
    setdataExceptions
    setphaseExceptions
    setvarExceptions
    show_scatExceptions

    Variables

    - __package__
    -[hide private] - - - - diff --git a/static_root/doc/pdffit2/toc-diffpy.pdffit2.tests.TestPdfFit-module.html b/static_root/doc/pdffit2/toc-diffpy.pdffit2.tests.TestPdfFit-module.html deleted file mode 100644 index bac52d03..00000000 --- a/static_root/doc/pdffit2/toc-diffpy.pdffit2.tests.TestPdfFit-module.html +++ /dev/null @@ -1,33 +0,0 @@ - - - - - TestPdfFit - - - - - -

    Module TestPdfFit

    -
    -

    Classes

    - TestPdfFit

    Variables

    - __package__
    -[hide private] - - - - diff --git a/static_root/doc/pdffit2/toc-diffpy.pdffit2.tests.TestPhaseFractions-module.html b/static_root/doc/pdffit2/toc-diffpy.pdffit2.tests.TestPhaseFractions-module.html deleted file mode 100644 index 5429f5cc..00000000 --- a/static_root/doc/pdffit2/toc-diffpy.pdffit2.tests.TestPhaseFractions-module.html +++ /dev/null @@ -1,33 +0,0 @@ - - - - - TestPhaseFractions - - - - - -

    Module TestPhaseFractions

    -
    -

    Classes

    - TestPhaseFractions

    Variables

    - __package__
    -[hide private] - - - - diff --git a/static_root/doc/pdffit2/toc-diffpy.pdffit2.tests.TestShapeFactors-module.html b/static_root/doc/pdffit2/toc-diffpy.pdffit2.tests.TestShapeFactors-module.html deleted file mode 100644 index d4f9398e..00000000 --- a/static_root/doc/pdffit2/toc-diffpy.pdffit2.tests.TestShapeFactors-module.html +++ /dev/null @@ -1,36 +0,0 @@ - - - - - TestShapeFactors - - - - - -

    Module TestShapeFactors

    -
    -

    Classes

    - TestSphereEnvelope
    TestStepCutEnvelope

    Functions

    - spherefactor

    Variables

    - __package__
    -[hide private] - - - - diff --git a/static_root/doc/pdffit2/toc-diffpy.pdffit2.tests.pdffit2testutils-module.html b/static_root/doc/pdffit2/toc-diffpy.pdffit2.tests.pdffit2testutils-module.html deleted file mode 100644 index ee4ca90d..00000000 --- a/static_root/doc/pdffit2/toc-diffpy.pdffit2.tests.pdffit2testutils-module.html +++ /dev/null @@ -1,36 +0,0 @@ - - - - - pdffit2testutils - - - - - -

    Module pdffit2testutils

    -
    -

    Functions

    - datafile

    Variables

    - __package__
    testdata_dir
    tests_dir
    thisfile
    -[hide private] - - - - diff --git a/static_root/doc/pdffit2/toc-diffpy.pdffit2.tests.run-module.html b/static_root/doc/pdffit2/toc-diffpy.pdffit2.tests.run-module.html deleted file mode 100644 index 00a8839c..00000000 --- a/static_root/doc/pdffit2/toc-diffpy.pdffit2.tests.run-module.html +++ /dev/null @@ -1,31 +0,0 @@ - - - - - run - - - - - -

    Module run

    -
    -

    Variables

    - __package__
    -[hide private] - - - - diff --git a/static_root/doc/pdffit2/toc-diffpy.pdffit2.tests.rundeps-module.html b/static_root/doc/pdffit2/toc-diffpy.pdffit2.tests.rundeps-module.html deleted file mode 100644 index 8c5cc395..00000000 --- a/static_root/doc/pdffit2/toc-diffpy.pdffit2.tests.rundeps-module.html +++ /dev/null @@ -1,31 +0,0 @@ - - - - - rundeps - - - - - -

    Module rundeps

    -
    -

    Variables

    - __package__
    -[hide private] - - - - diff --git a/static_root/doc/pdffit2/toc-diffpy.pdffit2.version-module.html b/static_root/doc/pdffit2/toc-diffpy.pdffit2.version-module.html deleted file mode 100644 index 41955b8f..00000000 --- a/static_root/doc/pdffit2/toc-diffpy.pdffit2.version-module.html +++ /dev/null @@ -1,33 +0,0 @@ - - - - - version - - - - - -

    Module version

    -
    -

    Variables

    - __gitsha__
    __package__
    __timestamp__
    -[hide private] - - - - diff --git a/static_root/doc/pdffit2/toc-everything.html b/static_root/doc/pdffit2/toc-everything.html deleted file mode 100644 index 9f62f410..00000000 --- a/static_root/doc/pdffit2/toc-everything.html +++ /dev/null @@ -1,187 +0,0 @@ - - - - - Everything - - - - - -

    Everything

    -
    -

    All Classes

    - diffpy.pdffit2.ipy_ext.EasyPDFPlotting
    diffpy.pdffit2.pdffit.PdfFit
    diffpy.pdffit2.tests.ExceptionsTest.allocExceptions
    diffpy.pdffit2.tests.ExceptionsTest.bangExceptions
    diffpy.pdffit2.tests.ExceptionsTest.blenExceptions
    diffpy.pdffit2.tests.ExceptionsTest.calcExceptions
    diffpy.pdffit2.tests.ExceptionsTest.constrainExceptions
    diffpy.pdffit2.tests.ExceptionsTest.fixparExceptions
    diffpy.pdffit2.tests.ExceptionsTest.freeparExceptions
    diffpy.pdffit2.tests.ExceptionsTest.getRExceptions
    diffpy.pdffit2.tests.ExceptionsTest.get_atomsExceptions
    diffpy.pdffit2.tests.ExceptionsTest.getcrwExceptions
    diffpy.pdffit2.tests.ExceptionsTest.getparExceptions
    diffpy.pdffit2.tests.ExceptionsTest.getpdf_diffExceptions
    diffpy.pdffit2.tests.ExceptionsTest.getpdf_fitExceptions
    diffpy.pdffit2.tests.ExceptionsTest.getpdf_obsExceptions
    diffpy.pdffit2.tests.ExceptionsTest.getvarExceptions
    diffpy.pdffit2.tests.ExceptionsTest.num_atomsExceptions
    diffpy.pdffit2.tests.ExceptionsTest.pdeselExceptions
    diffpy.pdffit2.tests.ExceptionsTest.pdfrangeExceptions
    diffpy.pdffit2.tests.ExceptionsTest.pselExceptions
    diffpy.pdffit2.tests.ExceptionsTest.read_dataExceptions
    diffpy.pdffit2.tests.ExceptionsTest.read_data_listsExceptions
    diffpy.pdffit2.tests.ExceptionsTest.read_structExceptions
    diffpy.pdffit2.tests.ExceptionsTest.save_difExceptions
    diffpy.pdffit2.tests.ExceptionsTest.save_pdfExceptions
    diffpy.pdffit2.tests.ExceptionsTest.save_resExceptions
    diffpy.pdffit2.tests.ExceptionsTest.save_structExceptions
    diffpy.pdffit2.tests.ExceptionsTest.selectAllExceptions
    diffpy.pdffit2.tests.ExceptionsTest.selectAtomIndexExceptions
    diffpy.pdffit2.tests.ExceptionsTest.selectAtomTypeExceptions
    diffpy.pdffit2.tests.ExceptionsTest.selectNoneExceptions
    diffpy.pdffit2.tests.ExceptionsTest.setdataExceptions
    diffpy.pdffit2.tests.ExceptionsTest.setphaseExceptions
    diffpy.pdffit2.tests.ExceptionsTest.setvarExceptions
    diffpy.pdffit2.tests.ExceptionsTest.show_scatExceptions
    diffpy.pdffit2.tests.TestPdfFit.TestPdfFit
    diffpy.pdffit2.tests.TestPhaseFractions.TestPhaseFractions
    diffpy.pdffit2.tests.TestShapeFactors.TestSphereEnvelope
    diffpy.pdffit2.tests.TestShapeFactors.TestStepCutEnvelope
    exceptions.AssertionError

    All Functions

    - diffpy.pdffit2.ipy_ext.load_ipython_extension
    diffpy.pdffit2.output.redirect_stdout
    - diffpy.pdffit2.pdffit._convertCallable
    -
    - diffpy.pdffit2.pdffit._format_bond_length
    -
    - diffpy.pdffit2.pdffit._format_value_std
    - diffpy.pdffit2.pdffit2.alloc
    diffpy.pdffit2.pdffit2.bond_angle
    diffpy.pdffit2.pdffit2.bond_length_atoms
    diffpy.pdffit2.pdffit2.bond_length_types
    diffpy.pdffit2.pdffit2.calc
    diffpy.pdffit2.pdffit2.constrain_int
    diffpy.pdffit2.pdffit2.constrain_str
    diffpy.pdffit2.pdffit2.copyright
    diffpy.pdffit2.pdffit2.create
    diffpy.pdffit2.pdffit2.delta1
    diffpy.pdffit2.pdffit2.delta2
    diffpy.pdffit2.pdffit2.dscale
    diffpy.pdffit2.pdffit2.fixpar
    diffpy.pdffit2.pdffit2.freepar
    diffpy.pdffit2.pdffit2.getR
    diffpy.pdffit2.pdffit2.get_atom_types
    diffpy.pdffit2.pdffit2.get_atoms
    diffpy.pdffit2.pdffit2.get_scat
    diffpy.pdffit2.pdffit2.get_scat_string
    diffpy.pdffit2.pdffit2.getcrw
    diffpy.pdffit2.pdffit2.getpar
    diffpy.pdffit2.pdffit2.getpdf_diff
    diffpy.pdffit2.pdffit2.getpdf_fit
    diffpy.pdffit2.pdffit2.getpdf_obs
    diffpy.pdffit2.pdffit2.getrw
    diffpy.pdffit2.pdffit2.getvar
    diffpy.pdffit2.pdffit2.is_element
    diffpy.pdffit2.pdffit2.lat
    diffpy.pdffit2.pdffit2.num_atoms
    diffpy.pdffit2.pdffit2.num_datasets
    diffpy.pdffit2.pdffit2.num_phases
    diffpy.pdffit2.pdffit2.occ
    diffpy.pdffit2.pdffit2.pdesel
    diffpy.pdffit2.pdffit2.pdfrange
    diffpy.pdffit2.pdffit2.phase_fractions
    diffpy.pdffit2.pdffit2.pscale
    diffpy.pdffit2.pdffit2.psel
    diffpy.pdffit2.pdffit2.qbroad
    diffpy.pdffit2.pdffit2.qdamp
    diffpy.pdffit2.pdffit2.rcut
    diffpy.pdffit2.pdffit2.read_data
    diffpy.pdffit2.pdffit2.read_data_arrays
    diffpy.pdffit2.pdffit2.read_data_string
    diffpy.pdffit2.pdffit2.read_struct
    diffpy.pdffit2.pdffit2.read_struct_string
    diffpy.pdffit2.pdffit2.redirect_stdout
    diffpy.pdffit2.pdffit2.refine
    diffpy.pdffit2.pdffit2.refine_step
    diffpy.pdffit2.pdffit2.reset
    diffpy.pdffit2.pdffit2.reset_scat
    diffpy.pdffit2.pdffit2.save_dif
    diffpy.pdffit2.pdffit2.save_pdf
    diffpy.pdffit2.pdffit2.save_res
    diffpy.pdffit2.pdffit2.save_struct
    diffpy.pdffit2.pdffit2.selectAll
    diffpy.pdffit2.pdffit2.selectAtomIndex
    diffpy.pdffit2.pdffit2.selectAtomType
    diffpy.pdffit2.pdffit2.selectNone
    diffpy.pdffit2.pdffit2.set_scat
    diffpy.pdffit2.pdffit2.setdata
    diffpy.pdffit2.pdffit2.setpar_RV
    diffpy.pdffit2.pdffit2.setpar_dbl
    diffpy.pdffit2.pdffit2.setphase
    diffpy.pdffit2.pdffit2.setvar
    diffpy.pdffit2.pdffit2.show_struct
    diffpy.pdffit2.pdffit2.spdiameter
    diffpy.pdffit2.pdffit2.sratio
    diffpy.pdffit2.pdffit2.stepcut
    diffpy.pdffit2.pdffit2.u11
    diffpy.pdffit2.pdffit2.u12
    diffpy.pdffit2.pdffit2.u13
    diffpy.pdffit2.pdffit2.u22
    diffpy.pdffit2.pdffit2.u23
    diffpy.pdffit2.pdffit2.u33
    diffpy.pdffit2.pdffit2.x
    diffpy.pdffit2.pdffit2.y
    diffpy.pdffit2.pdffit2.z
    diffpy.pdffit2.test
    diffpy.pdffit2.tests.TestShapeFactors.spherefactor
    diffpy.pdffit2.tests.pdffit2testutils.datafile
    diffpy.pdffit2.tests.test
    diffpy.pdffit2.tests.testdeps
    diffpy.pdffit2.tests.testsuite

    All Variables

    - diffpy.pdffit2.__package__
    diffpy.pdffit2.ipy_ext.__package__
    diffpy.pdffit2.output.__package__
    diffpy.pdffit2.pdffit.__intro_message__
    diffpy.pdffit2.pdffit.__package__
    diffpy.pdffit2.pdffit2.__package__
    diffpy.pdffit2.tests.ExceptionsTest.__package__
    diffpy.pdffit2.tests.TestPdfFit.__package__
    diffpy.pdffit2.tests.TestPhaseFractions.__package__
    diffpy.pdffit2.tests.TestShapeFactors.__package__
    diffpy.pdffit2.tests.__package__
    diffpy.pdffit2.tests.pdffit2testutils.__package__
    diffpy.pdffit2.tests.pdffit2testutils.testdata_dir
    diffpy.pdffit2.tests.pdffit2testutils.tests_dir
    diffpy.pdffit2.tests.pdffit2testutils.thisfile
    diffpy.pdffit2.tests.run.__package__
    diffpy.pdffit2.tests.rundeps.__package__
    diffpy.pdffit2.version.__gitsha__
    diffpy.pdffit2.version.__package__
    diffpy.pdffit2.version.__timestamp__
    -[hide private] - - - - diff --git a/static_root/doc/pdffit2/toc.html b/static_root/doc/pdffit2/toc.html deleted file mode 100644 index 4a029f15..00000000 --- a/static_root/doc/pdffit2/toc.html +++ /dev/null @@ -1,46 +0,0 @@ - - - - - Table of Contents - - - - - -

    Table of Contents

    -
    - Everything -
    -

    Modules

    - diffpy.pdffit2
    diffpy.pdffit2.ipy_ext
    diffpy.pdffit2.output
    diffpy.pdffit2.pdffit
    diffpy.pdffit2.pdffit2
    diffpy.pdffit2.tests
    diffpy.pdffit2.tests.ExceptionsTest
    diffpy.pdffit2.tests.TestPdfFit
    diffpy.pdffit2.tests.TestPhaseFractions
    diffpy.pdffit2.tests.TestShapeFactors
    diffpy.pdffit2.tests.pdffit2testutils
    diffpy.pdffit2.tests.run
    diffpy.pdffit2.tests.rundeps
    diffpy.pdffit2.version
    - [hide private] - - - - diff --git a/static_root/doc/pdfgetx/1.2 b/static_root/doc/pdfgetx/1.2 deleted file mode 120000 index 335438a7..00000000 --- a/static_root/doc/pdfgetx/1.2 +++ /dev/null @@ -1 +0,0 @@ -../pdfgetx3 \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.0.0/.buildinfo b/static_root/doc/pdfgetx/2.0.0/.buildinfo deleted file mode 100644 index 19702a35..00000000 --- a/static_root/doc/pdfgetx/2.0.0/.buildinfo +++ /dev/null @@ -1,4 +0,0 @@ -# Sphinx build info version 1 -# This file hashes the configuration used when building these files. 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-.. include:: abbreviations.txt -.. _my-configfile: -.. program:: pdfgetx3 - -Configuration file ------------------------------------------------------------------------- - -Configuration files may define the PDF processing parameters. -By default, the :program:`pdfgetx3` program attempts to read -:file:`.pdfgetx3.cfg` file from the user HOME directory, -then :file:`.pdfgetx3.cfg` and :file:`pdfgetx3.cfg` files -from the current working directory. -If configuration file has a different name, it needs to be specified -with the :option:`-c, --config <-c>` option. -The :program:`pdfgetn3` program works in the same way, -except it checks for configuration files -:file:`~/.pdfgetn3.cfg`, :file:`.pdfgetn3.cfg` and :file:`pdfgetn3.cfg`. - -The easiest way of creating a configuration file is to generate -a template content using the :option:`--createconfig` option as :: - - pdfgetx3 --createconfig=test.cfg - -and then change the generated test.cfg file in your favorite text -editor. The configuration file follows a simple "varname=value" syntax, -any lines starting with "#" are ignored as comments. - -The configuration file has several sections marked as ``[SECTIONNAME]``. -The ``[DEFAULT]`` section is mandatory and it contains the default -global settings. Any other sections are optional and they are applied -only when selected with the :option:`-s, --section <-s>` option on the -command line. Thus :: - - pdfgetx3 --config=test.cfg --section=nacl - -would read the parameters from the ``[nacl]`` section after reading the -defaults. Having several sections in the configuration -file is useful when there are multiple measurements that share most of -the parameters, but differ in a few of them, for example in chemical -composition. The configuration file can then contain sections per each -sample that define only the composition, while all other parameters are -specified just once in the global DEFAULT section. - - -Input files ------------------------------------------------------------------------- - -PDFgetX3 and PDFgetN3 accept input powder diffraction data -in the form of two-column text file, -where the first column x is either the scattering angle -|twotheta| in degrees, momentum transfer *Q* in inverse nanometers or *Q* -in inverse ångströms. The second column y contains the corresponding -scattered intensities normalized per unit solid angle. The actual type -of the x-values is identified by the :confval:`dataformat` parameter. -The input files may contain header with comments or metadata, and the -actual data are read from the first long section of numerical values. - -The input files are usually passed as command-line arguments to -:program:`pdfgetx3` or :program:`pdfgetn3` programs and must be paths -accessible from the current working directory. - -Input files can be also defined by setting the :confval:`inputfile` -value in the configuration file. The :option:`-d, --datapath <-d>` -option can be then used to provide additional data directories to -search for these inputs and for the :confval:`backgroundfile`. -This is to support configuration files located in a different -directory than the data. - -When the :option:`--find <-f>` option is active, the pdfgetx3 arguments -are understood as filename patterns and the input files are found -in the current or specified directory. - - -Output files ------------------------------------------------------------------------- - -PDFgetX3 and PDFgetN3 can produce up to four different output data files: - -* .iq -- |IQ|, the background-corrected - intensities sampled on a regular *Q*-space grid in inverse ångströms, - -* .sq -- |SQ|, the total scattering structure function, - with intensities normalized by average scattering factors and - corrected by a polynomial fit, - -* .fq -- |FQ|, the reduced structure function equal to *Q*\ (|SQ| - 1), - -* .gr -- |Gr|, the resultant PDF, where the first column is the - separation *r* in ångströms and the second is the function *G* in - Å\ :sup:`-2`. - -You can specify what output files should be produced by setting the -:confval:`outputtypes` parameter in the configuration file or by -passing the :option:`-t, --outputtypes <-t>` on the command line. - -The header of all output files contains the parameter values that were -used in the calculation and thus it is by itself a valid configuration -file. When passed as an argument to the :option:`--config <-c>` option, -the PDFgetX3 will reproduce the previous calculation. diff --git a/static_root/doc/pdfgetx/2.0.0/_sources/index.rst.txt b/static_root/doc/pdfgetx/2.0.0/_sources/index.rst.txt deleted file mode 100644 index 068bb525..00000000 --- a/static_root/doc/pdfgetx/2.0.0/_sources/index.rst.txt +++ /dev/null @@ -1,38 +0,0 @@ -.. PDFgetX3 documentation master file, created by - sphinx-quickstart on Tue Sep 21 18:35:11 2010. - You can adapt this file completely to your liking, - but it should at least contain the root `toctree` directive. - -######################################################################## -diffpy.pdfgetx -######################################################################## - -User manual for PDFgetX3, PDFgetN3, and Python package diffpy.pdfgetx. - -| Release |release| -| |today| - -======================================================================== -Table of contents -======================================================================== - - -.. toctree:: - :maxdepth: 2 - - intro - install - quick-start - tutorial - files - interact - options - plotdata - release - -======================================================================== -Indices -======================================================================== - -* :ref:`genindex` -* :ref:`search` diff --git a/static_root/doc/pdfgetx/2.0.0/_sources/install.rst.txt b/static_root/doc/pdfgetx/2.0.0/_sources/install.rst.txt deleted file mode 100644 index 03db4763..00000000 --- a/static_root/doc/pdfgetx/2.0.0/_sources/install.rst.txt +++ /dev/null @@ -1,136 +0,0 @@ -Installation -======================================================================== - -.. include:: abbreviations.txt - -Software requirements ------------------------------------------------------------------------- - -This software is written in Python programming language, therefore -you must have Python 3.7, 3.6, 3.5, 3.4 or 2.7 installed. In addition, -the following third-party Python libraries are also required: - -* setuptools - tools for installing Python packages -* six - Python 2 and 3 compatibility library -* NumPy - library for scientific computing with Python -* matplotlib - Python plotting library -* IPython - enhanced interactive Python shell - -Standard Python releases can be obtained from -https://www.python.org/downloads. -The third-party libraries can be found at the -`Python Package Index `__ -or using any Internet search engine. - -Another more convenient option is to obtain one of the science-oriented -Python distributions such as -`Anaconda Python`_, -`Enthought Canopy `_ or -`PythonXY `_, -These distributions already include all the necessary libraries, so the -required Python software can be all installed in one step. - -On Linux operating systems the third-party libraries are usually -included in a system software repository. For example on an -Ubuntu Linux computer the software dependencies can be all installed -with a single shell command :: - - sudo apt-get install \ - python3-six python3-setuptools python3-numpy python3-matplotlib ipython3 - -This may be, of course, as well accomplished using the GUI -driven Synaptic package manager. Other Linux -distributions may use different software management tools, -but the names of the necessary packages should be very similar -to those above. - -On Windows operating system, it may be necessary to add the -``C:\Python37`` directory and the scripts directory -``C:\Python37\Scripts`` to the system :envvar:`!PATH`. -Some Python distributions already do so as a part of their -installation process. The easiest way to check is to start the -:program:`Command Prompt`, type there ``python`` and see if this -starts the Python interpreter. - - -Installation ------------------------------------------------------------------------- - -The diffpy.pdfgetx software is distributed as a Python egg package, -which can be obtained from the -`Columbia Technology Ventures -`__. -Once all the required software is in -place, start the command prompt on Windows or a Unix terminal on Linux -or Mac, navigate to the directory that contains the egg file and -execute the following command:: - - python -m easy_install ./diffpy.pdfgetx-VERSION.egg - -Here VERSION needs to be replaced to match the actual filename. -It is critical to use one of the supported Python versions otherwise -the program would not work. On Linux and Mac operating systems the -installation may need to run with root user privileges, for example, -by prepending ``sudo`` to the command line above. -If root access is not available, use the -easy_install options :option:`!--user`, :option:`!--prefix` or -:option:`!--install-dir` to install the software to a user-writable -directory. - -This software provides two programs for PDF conversion, -:program:`pdfgetx3` and :program:`pdfgetn3`. -To check if they are correctly installed run :: - - pdfgetx3 --version - pdfgetn3 --version - -This should display the software version, which should equal -the VERSION string in the egg package name. -The installation also includes a :program:`plotdata` -command for an easy plotting of text data files. To verify -if plotdata works, run the ``plotdata --version`` command. -Finally, a comprehensive test of the installed software can -be executed using :: - - python -m diffpy.pdfgetx.tests.run - - -.. index:: %pdfgetx3 IPython magic -.. index:: %pdfgetn3 IPython magic - -IPython magic command ------------------------------------------------------------------------- - -These instructions are intended for `IPython`_ users who would like to -integrate PDFgetX3 and PDFgetN3 into their IPython environment. If -you don't plan to customize IPython in such way you can safely skip -this paragraph. - -When pdfgetx3 or pdfgetn3 are run in interactive mode, they start -IPython interactive shell and define an extra ``%pdfgetx3`` and -``%pdfgetn3`` magic commands within the IPython session. The IPython -magic commands are not valid Python code, but work in a similar -fashion as standard shell commands. The ``%pdfgetx3`` and ``%pdfgetn3`` -magics can be thus used with the same options and arguments as if run -from the shell. This is useful for processing more files, while -preserving all plots or variables that were already created -in an IPython session. - -The ``%pdfgetx3`` and ``%pdfgetn3`` magic commands can be defined -permanently so they are available in all IPython sessions. To set -this up - -#. find the ``profile_default/ipython_config.py`` file and open it - in a text editor. If that file does not exists, - create it first by executing :: - - ipython profile create - -#. navigate to the paragraph that contains the - :py:data:`!c.InteractiveShellApp.extensions` and add there - the following line:: - - c.InteractiveShellApp.extensions = ['diffpy.pdfgetx.ipy_magics'] - - There must be no leading indent, i.e., the text must start at the - very first column. diff --git a/static_root/doc/pdfgetx/2.0.0/_sources/interact.rst.txt b/static_root/doc/pdfgetx/2.0.0/_sources/interact.rst.txt deleted file mode 100644 index 0d4fb746..00000000 --- a/static_root/doc/pdfgetx/2.0.0/_sources/interact.rst.txt +++ /dev/null @@ -1,154 +0,0 @@ -Interactive mode -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 -.. py:currentmodule:: _interactive_ - -The interactive mode is activated by using either the -:option:`-i, --interact <-i>` option or a non-empty -:option:`--plot <-p>` option. In the interactive mode -the program starts an `IPython`_ interactive shell and pre-loads several -functions and variables related to the PDF calculation. It also defines -IPython commands ``%pdfgetx3`` and ``%pdfgetn3``, which can be used with -the same syntax as the :program:`pdfgetx3` and :program:`pdfgetn3` in -system shell. -The interactive session is also initialized with all functions from the -:py:mod:`matplotlib.pyplot` module for convenient plotting. -The functions and variables related to PDF processing are: - -.. py:function:: pdfgetter(x=None, y=None, filename='', **kwargs) - - Instance of the :py:class:`!PDFGetter` class which serves as a - low-level function that calculates the PDF. This is a callable - object, which takes as an argument a pair of input arrays for - (*Q*, intensity) or (|twotheta|, intensity) depending on - :confval:`dataformat`. It can be also called with a keyword - argument ``filename=FILE``, which would read the input arrays - from the specified file. When called with no arguments, - it calculates PDF from the last input data. - - :parameters: - * **x** (*numpy.ndarray, optional*) -- - The *Q* or |twotheta| values in powder diffraction pattern. - - * **y** (*numpy.ndarray, optional*) -- - The scattered intensities in powder diffraction pattern - - * **filename** (*str, optional*) -- - The text data file for loading the `x`, `y` values when - they are not specified. - - * **kwargs** (*misc, optional*) -- - Extra keyword arguments that are applied to - the :data:`!config` object, for example ``qmax=20``. - - :return: - A pair of output arrays *(r, G)*. - -.. interactvar:: config - - Instance of the :py:class:`!PDFConfig` class that stores the - :ref:`parameters and input files ` for the program. - Use ``print(config)`` to display the current configuration values. - This is the same object as :data:`!pdfgetter.config`. Configuration - may be changed by setting a respective attribute of the - :interactvar:`!config` object, for example:: - - In [1]: config.qmax = 21 - - The :py:data:`!config` values may be also changed by calling the - :py:func:`pdfgetter` or :py:func:`processfiles` function with a - corresponding keyword argument, for example - ``processfiles(qmax=20, force="once")``. - -.. interactvar:: iraw - iq - sq - fq - gr - - These variables are assigned the input raw intensities and the - intermediate results, stored as matrix rows. The matrix rows - correspond to twotheta1, intensity1, twotheta2, intensity2, etc. - Because matrices are iterated row first, the raw intensities - from all input files can be plotted with the matplotlib plot - function as ``plot(*iraw)``. - - These variables should be considered read-only and are reset - with subsequent PDF calculations. - -.. py:function:: tuneconfig(plotids=None, pdfgetter=None, axeslist=None) - - Show a GUI dialog for interactive tuning of configuration variables. - - :arg plotids: - The string or iterable that specify what interactive plots should be - tuned. By default the same as ``config.plot``. It can be also an - integer index or name of a transformation in :py:func:`pdfgetter` or - a reference to a :py:class:`!Transformation` object. - - :arg pdfgetter: - The optional :py:class:`!PDFGetter` object to be tuned. - This is by default the interactive :py:func:`!pdfgetter` object. - - :arg axeslist: - An optional list of matplotlib Axes for showing interactive plots. - When None, use ``subplot(N, 1, i)`` to create any necessary axes. - - .. note:: - - Changes from :py:func:`!tuneconfig` apply only to the configuration - and results in memory. Use the :py:func:`processfiles` function - to save them to disk. - - .. seealso:: :ref:`my-tuneconfig` tutorial - -.. py:function:: processfiles(filename=None, **kwargs) - - Process all input files again with the current configuration values. - This is a higher-level function than :py:func:`pdfgetter`, as - it also saves output files and produces plots as specified by the - :interactvar:`config` object. - - :arg filename: - One or more input files to be converted to PDFs and saved or - plotted according to the :py:data:`!config` settings. Use the - previous list of input files when not specified. - - :arg kwargs: - An optional keyword arguments to set for the :py:data:`!config` - object, for example ``(force="once", qmax=18)``. - - This function updates the :interactvar:`config.inputfiles ` - list and the :interactvar:`iraw`, :interactvar:`iq`, - :interactvar:`sq`, :interactvar:`fq` and :interactvar:`gr` - interactive variables. - -.. py:function:: clearsession() - - Clear all elements from the :interactvar:`config.inputfiles ` - and also the - :interactvar:`iraw`, :interactvar:`iq`, :interactvar:`sq`, - :interactvar:`fq` and :interactvar:`gr` variables. - - :return: - No return value. - -.. py:currentmodule:: diffpy.pdfgetx -.. autofunction:: loaddata - - This function can be imported from the - :py:mod:`!diffpy.pdfgetx` module. - -.. py:currentmodule:: diffpy.pdfgetx.plotdata -.. autofunction:: plotdata - - This function can be imported from the - :py:mod:`!diffpy.pdfgetx.plotdata` module. - -.. py:currentmodule:: diffpy.pdfgetx -.. autofunction:: findfiles - - This function can be imported from the - :py:mod:`!diffpy.pdfgetx` module. diff --git a/static_root/doc/pdfgetx/2.0.0/_sources/intro.rst.txt b/static_root/doc/pdfgetx/2.0.0/_sources/intro.rst.txt deleted file mode 100644 index ac240db4..00000000 --- a/static_root/doc/pdfgetx/2.0.0/_sources/intro.rst.txt +++ /dev/null @@ -1,64 +0,0 @@ -Introduction -======================================================================== - -diffpy.pdfgetx is a simple yet powerful software for converting X-ray -or neutron powder diffraction data to atomic Pair Distribution Functions -(PDFs). The software includes command line programs PDFgetX3 and -PDFgetN3 for processing X-ray and constant-wavelength neutron -diffraction data respectively. PDFgetX3 and PDFgetN3 can be used in -a batch mode to convert a series of data files without user -intervention. The programs can be also run in an interactive -mode that allows to control process parameters and plot the PDFs -and any intermediate results. Users can interactively tune the -PDF processing parameters, visualize their effect on the results and -adjust them to their optimum values. The programs are bundled with -Python library diffpy.pdfgetx for PDF processing functions, which -can be used in custom Python scripts. - - -.. index:: license - -License notice ------------------------------------------------------------------------- - -.. include:: ../../LICENSENOTICE.txt - - -.. index:: authors - -Authors ------------------------------------------------------------------------- - -This code was written by members of the Billinge Group at -Columbia University and Brookhaven National Laboratory including -Pavol Juhás, -Timur Davis, -Christopher Wright, -Christopher Farrow, -Simon Billinge. - - -.. index:: citations, references - -References ------------------------------------------------------------------------- - -If you use this program for a scientific research that leads -to publication, we ask that you acknowledge use of the program -by citing the following paper in your publication: - - P. Juhás and T. Davis, C. L. Farrow, S. J. L. Billinge - `PDFgetX3: A rapid and highly automatable program for processing - powder diffraction data into total scattering pair distribution - functions `__, - *J. Appl. Crystallogr.* **46**, 560-566 (2013) - -For research publications that use this software to process neutron -diffraction data we ask you to also cite: - - P. Juhás, J. N. Louwen, L. van Eijck, E. T. C. Vogt, - S. J. L. Billinge - `PDFgetN3: atomic pair distribution functions from neutron - powder diffraction data using ad hoc corrections - `__, - *J. Appl. Crystallogr.* **51** (2018) diff --git a/static_root/doc/pdfgetx/2.0.0/_sources/options.rst.txt b/static_root/doc/pdfgetx/2.0.0/_sources/options.rst.txt deleted file mode 100644 index c3d4a387..00000000 --- a/static_root/doc/pdfgetx/2.0.0/_sources/options.rst.txt +++ /dev/null @@ -1,361 +0,0 @@ -Options and parameters -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 - -PDFgetX3 and PDFgetN3 are very flexible in allowing users to customize -the actions of the program. They have a number of parameters that can -be specified either in configuration file or as command line options. -Here is a complete description of the parameters and options used by -either program. - - -.. Note :: - - The command line options start with a leading "-" and can - be only used as command line arguments when starting the - :program:`pdfgetx3` program. Within configuration file the parameter - names are plain words without any leading dashes. Finally, - parameters can be also set in the interactive mode as attributes of - the :interactvar:`config` object, but the assignments must be valid - Python statements. Here are examples of setting composition of - a processed specimen using each of these forms: - - #. assigned in configuration file:: - - ... - composition = CaTiO3 - ... - - #. set as a command-line option when starting :program:`pdfgetx3` or - :program:`pdfgetn3`:: - - pdfgetx3 --composition=CaTiO3 - - #. set in the IPython interactive mode:: - - pdfgetx3 -i - ... - In [1]: config.composition = "CaTiO3" - - -Program operation ------------------------------------------------------------------------- - -.. option:: -h, --help - - Display a brief usage information with a list of command line options - and exit. - -.. option:: -V, --version - - Display the program version and exit. - -.. option:: --manual - - Open this manual in a Web browser and exit. - -.. option:: -f, --find -.. _my-findpatterns: - - Select input files that match all patterns. The command - line arguments are by default taken as input files. However, - with the :option:`!--find` option they are processed as - file patterns and the matching files are then used as inputs. - The input files are by default searched in the current directory - unless there is a path entry (e.g., :file:`data/`) that - selects a different search path. The search patterns are - interpreted as fixed strings, all of which must be present - in the file name. A single argument ``+`` starts - a new group of patterns to match more files that are not - covered by one set of patterns. Additional pattern - groups reuse the current search path unless they provide - their own path value. Pattern groups containing only - a path entry reuse file patterns from the last group. - When pattern groups overlap the repeated matches are ignored - to make the resulting list of files unique. Files starting - with ``.`` are ignored unless there is ``^.`` pattern - that explicitly matches them. The search - syntax provides the following special patterns: - - .. tabularcolumns:: |l|p{0.75\textwidth}| - - +---------+------------------------------------------------------------+ - | ^ | match at the beginning of the string, i.e., ``^start`` | - | | matches only filenames that start with "start". | - +---------+------------------------------------------------------------+ - | $ | match at the end of string, for example, ``.chi$`` selects | - | | file names ending with ".chi". A ``$`` on its own | - | | matches every string and can be used to select all files. | - +---------+------------------------------------------------------------+ - | | match number *N* preceded by any number of leading zeros, | - | | e.g., ``<7>`` would match in "f7.chi", "f007.chi", but not | - | | in "f77.chi". | - +---------+------------------------------------------------------------+ - | | match an integer range from *N* to *M* inclusive. | - | | The matched number may have one or more leading zeros. | - +---------+------------------------------------------------------------+ - | <7-> | match number 7 or larger. | - +---------+------------------------------------------------------------+ - | <-7> | match number 7 or smaller. | - +---------+------------------------------------------------------------+ - | <-> | match any integer number. | - +---------+------------------------------------------------------------+ - | \+ | start a new pattern group, for example, ``.chi$ + .dat$`` | - +---------+------------------------------------------------------------+ - | / | set search path. An argument containing the ``/`` symbol | - | | is taken as the search path, for example, ``data/`` or | - | | ``./``. Each pattern group may provide its own search | - | | path effective for that and any subsequent pattern group. | - +---------+------------------------------------------------------------+ - - The ``^$<>`` characters are often special to Unix or Windows - command shells, therefore they need to be enclosed in double - quotes (\\") when used on command line. - - .. seealso:: tutorial on :ref:`my-findexamples` - -.. option:: -l, --list - - List all input files and exit. This is useful with the - :option:`!--find` option to verify if input files - are matched as intended. - - -Configuration file options ------------------------------------------------------------------------- - -.. option:: -c CONFIG, --config=CONFIG - - Read custom configuration file after loading the default ones. - Do not load any configuration file when "NONE". - -.. option:: -s NAME, --section=NAME - - Load the custom configuration file section ``[SectionName]`` after - loading the ``[DEFAULT]`` section. This is useful for creating - several configuration variants in a single configuration file. - -.. option:: --createconfig=FILE - - Write template configuration to a new FILE and exit. Write - to the standard output when FILE is "-". - -See also the :ref:`configuration file ` section -for further details. - -.. _my-ioparameters: - -Input and output options ------------------------------------------------------------------------- - -.. confval:: inputfile - - This parameter allows to specify one or more input files in the - configuration file, one file per line. The :confval:`!inputfile` - is only used if no input files were provided on the - :program:`pdfgetx3` or :program:`pdfgetn3` command line. - -.. confval:: dataformat -.. option:: --format=FORMAT - - Format of input files. Available formats are: ``twotheta``, ``QA``, - ``Qnm`` corresponding to a two-column text data where the first - column is either the scattering angle |twotheta| in degrees, *Q* in - inverse ångströms or *Q* in inverse nanometers. - -.. confval:: backgroundfile -.. option:: -b FILE, --background=FILE - - Optional datafile with background intensities from an empty sample - holder. It must be in the same dataformat as other input files. - -.. _my-datapath: -.. confval:: datapath -.. option:: -d DATAPATH, --datapath=DATAPATH - - One or more extra directories to be searched for input or - background data files. The :option:`!-d` option can be specified - several times to add more directories, these are prepended in front - of any default value. Within configuration file the datapath - directories have to be listed each on a separate line. - - A special value "NONE" (or "none") clears any previously defined - paths and only the further paths, if any, would be searched for - inputs. - -.. confval:: output -.. option:: -o OUTPUT, --output=OUTPUT - - Output file name, write to the standard output when "-". The - :option:`-t, --outputtypes <-t>` option controls what results are - being saved. Normally the OUTPUT is used as a custom basename for - the output files. The OUTPUT may contain @f, @h, @r, @e, @t, @b, @o - tokens, which are expanded as follows: - - ===== ================== ======================================= - token example definition - ===== ================== ======================================= - @h dir1/dir2 the input file directory or "." - @r dir1/dir2/filename the input path with extension removed - @e dat the input file extension without "." - @t filename.dat the tail component of the input file - @b filename the tail component with extension removed - @o gr the output extension iq, sq, fq or gr - ===== ================== ======================================= - - An empty value works the same as "@b.@o" and saves the data - in the current directory with a proper extension for the - saved results. When "@o" is not present in the OUTPUT, it is - appended as a default filename extension. - -.. confval:: outputtypes -.. option:: -t TYPES, --outputtypes=TYPES - - Result types to be saved, one or more comma separated values. - Supported values are "iq", "sq", "fq", "gr", corresponding to the - |IQ|, |SQ|, |FQ| and |Gr| curves; these are also used as output - file extensions. - - Result files are not written when empty, "none" or "NONE". - -.. confval:: force -.. option:: --force=FORCE - - Overwrite existing output files. By default the output - files are not written if they already exist. Possible values - in a configuration file are "true", "yes", "on", "1" or - "false", "no", "off", "0" or "once". The special value "once" - permits one overwrite and then resets ``config.force`` to - ``False``. Note that in interactive mode the values assigned - to ``config.force`` are converted to Python :py:class:`bool` - unless equal to "once". - - -.. _my-pdfparameters: - -PDF parameters ------------------------------------------------------------------------- - - -.. confval:: mode -.. option:: --mode=STRING - - The PDF conversion mode, i.e., the name of the - :py:func:`.pdfgetter` setup. The available modes correspond - to the radiation type used in powder diffraction experiment and can - be "xray" or "neutron". - -.. confval:: wavelength -.. option:: -w FLOAT, --wavelength=FLOAT - - X-ray wavelength in ångströms. This value is required - for the "twotheta" dataformat in order to convert the scattering - angles |twotheta| to a momentum transfer *Q*. For other data formats - the wavelength is not necessary and may be left undefined. - -.. confval:: twothetazero -.. option:: --twothetazero=FLOAT - - Position of the zero scattering angle in diffractometer degrees. - This parameter corrects for a constant offset in the - measured |twotheta| values. When loading configuration file - it is assumed 0 unless specified otherwise. This parameter - is only effective for the "twotheta" dataformat. - -.. confval:: composition -.. option:: --composition=STRING - - Chemical composition of the sample. Supported formats are - "PbTi0.5Zr0.5O3", "Pb 1 Ti 1/2 Zr 1/2 O 3" or "CH3 (CH2)3 OH". - Space characters are ignored, unit counts can be omitted, but it is - important to use a proper upper and lower case in atom symbols. - Elements can appear several times in the formula, e.g., "CH3 CH3", - and the formula may contain parentheses or fractional - stoichiometries. - -.. confval:: bgscale -.. option:: --bgscale=FLOAT - - Scaling of the background intensities loaded from the - :confval:`backgroundfile`, by default 1. - -.. confval:: rpoly -.. option:: --rpoly=FLOAT - - *r*-limit for the maximum frequency in the |FQ| correction polynomial. - The PDF is unreliable at shorter *r*, however a - very small :confval:`!rpoly` would disable polynomial correction and - give noisy PDF. - Larger values produce closer fits with a higher degree polynomial, - but when too large, they might smooth-out a useful signal in the - data. The default is 0.9. - -.. confval:: qmaxinst -.. option:: --qmaxinst - - The *Q* cutoff for the meaningful input intensities in inverse - ångströms. Some data files may contain trailing zeros - or unreliable intensities at the upper bound of the detector range. - The :confval:`!qmaxinst` defines a threshold for unreliable data. - The parameter is also used as an upper boundary for the polynomial - fit correction of the |SQ| data. - -.. confval:: qmin -.. option:: --qmin - - The lower *Q*-limit for the Fourier transformation of the |FQ| curve - in inverse ångströms. - -.. confval:: qmax -.. option:: --qmax - - The upper *Q*-limit for the Fourier transformation of the |FQ| curve - in inverse ångströms. This is essentially a limit, where sample - signal decays to the level of data noise. - -.. confval:: rmin -.. option:: --rmin=FLOAT - - Lower bound of the *r*-grid for the calculated PDF in ångströms. - -.. confval:: rmax -.. option:: --rmax=FLOAT - - Upper bound of the *r*-grid for the calculated PDF in ångströms. - -.. confval:: rstep -.. option:: --rstep=FLOAT - - Spacing of the *r*-grid for the calculated PDF in ångströms. - - -Other parameters ------------------------------------------------------------------------- - -.. confval:: plot -.. option:: -p TYPES, --plot=TYPES - - Plot the specified results. A comma separated list with one or - more items from "iq", "sq", "fq", "gr". No plot is produced when - empty, "none" or "NONE". Setting this option turns on the - interactive mode. - -.. confval:: interact -.. option:: -i, --interact - - Start an IPython interactive session after processing all files. - Useful for tuning the configuration parameters or interactive - plotting. This is always on when plot option has been set. - See also :doc:`interact` for further details. - -.. confval:: verbose -.. option:: --verbose=VALUE - - Level of detail for the program to report about its actions. - Possible values are "error", "warning", "info", "debug", "all" or an - integer number from 0 to 5. Messages are completely suppressed when - 0, all messages are printed when verbose is 5 ("all") or higher. - This option is useful for diagnostics of any unexpected behavior - in the program. diff --git a/static_root/doc/pdfgetx/2.0.0/_sources/plotdata.rst.txt b/static_root/doc/pdfgetx/2.0.0/_sources/plotdata.rst.txt deleted file mode 100644 index d1c02156..00000000 --- a/static_root/doc/pdfgetx/2.0.0/_sources/plotdata.rst.txt +++ /dev/null @@ -1,161 +0,0 @@ -.. index:: plotdata (program) -.. _cmd-plotdata: - -The plotdata program -======================================================================== - -.. include:: abbreviations.txt -.. program:: plotdata - -The PDFgetX3 software includes a simple stand-alone utility -:program:`plotdata` for plotting text data files. In most cases -this program can be invoked from a command-shell as :: - - plotdata file1.dat file2.dat - -which plots the numerical data from the text files :file:`file1.dat`, -:file:`file2.dat` together in a single graph. By default the first -column is used as an *x* variable and the second column is used for the -*y* values. After displaying the plot the program starts an `IPython`_ -interactive session allowing the user to modify or save plots. The -IPython session is initialized with the :data:`!filenames` variable -containing a list of plotted files. It also pre-loads the -|plotdata| and |findfiles| functions just as in PDFgetX3 -interactive session. The :py:func:`!plotdata` -function works in a similar way as the :program:`plotdata` program, -just its arguments need to be passed as Python function arguments -instead of command-line options. Thus an equivalent call of the -:py:func:`!plotdata` function would be:: - - In [1]: plotdata(['file1.dat', 'file2.dat']) - - -Selecting files ------------------------------------------------------------------------- - -The :program:`plotdata` program includes a file searching feature -that is useful for selecting a set of files in large -directories. It is also convenient for Windows operating systems, -where the command prompt cannot do filename expansion for patterns -such as ``*.dat``. The file search feature is controlled by the -following options: - -.. option:: -f, --find - - Use command line arguments as filename patterns and plot all matching - files. This option works in the same way as for - :program:`pdfgetx3`, for full details see the - :option:`pdfgetx3 --find ` documentation. Note that - within command line the special patterns ``^$<>`` need to be quoted - in double quotes (\\") so they are not processed by command shell. - -.. option:: -l, --list - - List the input files and exit. This is useful in conjunction - with the :option:`!-f, --find` option to check if data files - are selected as intended. - -Assuming the current directory contains 20 files named -:file:`file1.dat`, :file:`file2.dat`, ..., :file:`file20.dat`, -the plotting of files 9 to 13 could be done (with a check listing) -as follows :: - - $ plotdata -fl "<9-13>.dat" - file9.dat - file10.dat - file11.dat - file12.dat - file13.dat - $ plotdata -f "<9-13>.dat" - -Within an interactive IPython session the equivalent plot could be -produced by combining the |plotdata| and |findfiles| functions as :: - - In [1]: plotdata(findfiles("<9-13>.dat")) - - -Selecting x and y data ------------------------------------------------------------------------- - -The :program:`plotdata` program provides several ways of selecting -columns for *x* or *y* data and for specifying plot markers or line -formats. The columns can be specified using their integer index, -but one needs to keep in mind the index of the first column is "0" -as per Python indexing conventions. Here is a list of options -supported by the plotdata program (and function): - - -.. option:: -x X - - index or name of the *x*-column to plot. See the :option:`-y` option - for the supported syntax, but note that ``X`` may select only one - column. When set to "." use the data-row index for *x*. - -.. option:: -y Y - - index or name of the *y*-column or columns to plot. The ``Y`` column - specification can be a comma separated list of indices, column names - or Python-like ranges, for example "1,2", "G", "1:4" (START:STOP, - same as "1,2,3"), "1:4:2" (START:STOP:STEP, same as "1,3"), or - "-2:" (same as "-2,-1", i.e, the last 2 columns). Because column - indexing starts at "0" the second column must be specified as "1". - - The column names work if the data section in the file is preceded by - a headline of unique column names, for example:: - - x square cube - 1 1 1 - 2 4 8 - 3 9 27 - 4 16 64 - - For such data file the plotdata program will recognize column names - "x", "square" and "cube" and an implicit "." for row index. - -.. option:: -s STYLE, --style=STYLE - - optional plot format specification. See the - :func:`matplotlib.pyplot.plot` function - for a list of available formats. - -.. option:: -L LOG, --log=LOG - - axes to be plotted with logarithmic scaling, for example, "x", "y" or - "xy". Axes not listed in ``LOG`` will use linear scaling. - -.. option:: -h, --help - - display a brief usage info and exit. - -.. option:: -V, --version - - show program version and exit. - -.. option:: --manual - - Open this manual page in a Web browser and exit. - - -Examples ------------------------------------------------------------------------- - -The examples directory :file:`plotdata` contains a :file:`sincos.dat` -file that has 3-columns of values labeled as "x", "sin" and "cos". -Here are several examples of the :program:`plotdata` capabilities -when used from command line - the user is encouraged to try them out:: - - plotdata sincos.dat - plotdata -y 1,2 sincos.dat - plotdata -x . -y 0:3 sincos.dat - plotdata -y cos sincos.dat - plotdata -x sin -y cos -sr-- sincos.dat - -An equivalent usage from a general IPython session would be:: - - ipython --matplotlib=auto - In [1]: from diffpy.pdfgetx.plotdata import plotdata - In [2]: plotdata('sincos.dat') - In [3]: plotdata('sincos.dat', y=[1,2]) - In [4]: plotdata('sincos.dat', x='.', y=':3') - In [5]: plotdata('sincos.dat', y='cos') - In [6]: plotdata('sincos.dat', x='sin', y='cos', style='r--') diff --git a/static_root/doc/pdfgetx/2.0.0/_sources/quick-start.rst.txt b/static_root/doc/pdfgetx/2.0.0/_sources/quick-start.rst.txt deleted file mode 100644 index dc27fca1..00000000 --- a/static_root/doc/pdfgetx/2.0.0/_sources/quick-start.rst.txt +++ /dev/null @@ -1,151 +0,0 @@ -Quick-start guide -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 - -This guide assumes that the software has been correctly installed and -its command line programs PDFgetX3 and PDFgetN3 can be executed by -typing :program:`pdfgetx3` or :program:`pdfgetn3` in a shell -window. Please, refer to the :doc:`installation ` section -if this is not working yet. - -.. index:: pdfgetx3 (program) -.. _cmd-pdfgetx3: - -pdfgetx3 command ------------------------------------------------------------------------- - -The pdfgetx3 program is a command-line application, therefore all -the input files and run-parameters are supplied either as command-line -arguments or through a configuration file. In general, the pdfgetx3 is -executed from a command shell as :: - - pdfgetx3 [options] input1 input2 ... inputN - -The :file:`inputN` stands for an input powder diffraction data. The -:file:`inputN` file is a simple two-column text file, where the first -column corresponds to either the |twotheta| diffraction angle, or a -momentum transfer, *Q*, in inverse nanometer or inverse ångström units. -The second column contains the corresponding X-ray intensities. The -input file may start with a header containing comments or metadata -related to the measurement. PDFgetX3 will ignore any text leading to a -long two-column section. The example input files in this manual were -created with the -`FIT2D program `_ using -its "chi" output format, thus we will also refer to them as "chi-files". -A typical content of a "chi" file looks as folows: - -.. code-block:: none - - Pt_bulk-00055.tif: 2-theta Scan - 2-Theta Angle (Degrees) - - 1465 - 2.0003892E-02 0.0000000E+00 - 6.0011677E-02 0.0000000E+00 - 1.0001946E-01 0.0000000E+00 - 1.4002724E-01 0.0000000E+00 - 1.8003502E-01 0.0000000E+00 - ... - -The command-line options are arguments that start with a dash "-" and -are used to specify run-parameters or modify the program behavior. The -options can be specified in a short form that consists of a dash and -a single character, or in a long, more descriptive format starting with -a doubled dash ``--``. Options may require values. For short options, -the value may be joined to the option string, for example -:option:`!-w0.142774`, while for the long options it has to be separated -with an equal sign, e.g., :option:`!--wavelength=0.142774`. Although -all the PDF calculation parameters can be passed as command line -options, it is often more convenient to set them in a configuration -file. When run parameter is present both in a configuration file and -as command-line option, the command-line value takes precedence. The -command-line options are all described in the :doc:`options` section of -this manual. A brief summary of options can be also displayed by -executing :: - - pdfgetx3 --help - -The best way of getting familiar with PDFgetX3 is to process -the example diffraction data described in the :doc:`tutorial`. -In general, the first step is to create a commented configuration file -``pdfgetx3.cfg`` using:: - - pdfgetx3 --createconfig=pdfgetx3.cfg - -The configuration file can have any name, but it is preferable -to use either :file:`pdfgetx3.cfg` or :file:`.pdfgetx3.cfg`, -for these files are automatically loaded by PDFgetX3. All -other configuration files must be passed explicitly to the program -using the :option:`-c, --config <-c>` option. - -Open the pdfgetx3.cfg file in a **text** editor. The lines that -start with a hash mark ``#`` are comments and are not used. The lines -starting with a right brace ``[`` denote sections in the configuration -file. The active lines are all formatted as -"NAME=VALUE". Although PDFgetX3 has many options, in general only a few -of them are critical for the PDF calculation: - -* :confval:`dataformat` -- specifies the input data format - -* :confval:`wavelength` -- radiation wavelength in Å required for the - "twotheta" format. - -* :confval:`composition` -- chemical composition of the sample - -* :confval:`qmaxinst` -- upper *Q* boundary for a meaningful measurement - intensities. - -* :confval:`qmax` -- *Q*-cutoff for the Fourier transformation that - yields the PDF. - -Save the updated configuration file and run pdfgetx3 on the input data -:file:`FILENAME.chi` as :: - - pdfgetx3 --verbose=info -t gr FILENAME.chi - -Here the :option:`--verbose=info <--verbose>` option makes pdfgetx3 -print -more information about its operation. This helps to verify -if the configuration file is indeed loaded and if the parameter -values are assigned as intended. The PDFgetX3 will not write -any output files unless told so. The :option:`-t gr <-t>` option -tells the program to save the final |Gr| curve as a -:file:`FILENAME.gr` file in the working directory. - -The saved .gr file contains a header with all the calculation -parameters and the input file name. The .gr file can be therefore -also used as a configuration file in order to redo the same -calculation :: - - pdfgetx3 -c FILENAME.gr --plot=fq,gr - -Note this command does not include any .chi file and this will as -a result process the previously used input :file:`FILENAME.chi`. -The :option:`--plot=fq,gr <-p>` option tells PDFgetX3 to -display 2 plots for the reduced structure function |FQ| and the -final PDF |Gr|. The :option:`!--plot` option also implies an -:doc:`interactive mode ` -therefore the program does not exit, but starts an -interactive `IPython`_ session. To exit the interactive mode, -type ``exit()`` and press Enter. - -.. index:: pdfgetn3 (program) -.. _cmd-pdfgetn3: - -pdfgetn3 command ------------------------------------------------------------------------- - -The pdfgetx3 and pdfgetn3 programs operate in a very similar fashion -apart from being set to assume X-ray and neutron data respectively. -The type of the scattering data can be also specified using the -:option:`--mode` option. Running ``pdfgetn3`` is nearly identical -to executing ``pdfgetx3 --mode=neutron``. The only difference between -these commands is that pdfgetx3 checks for configuration files -:file:`pdfgetx3.cfg` and :file:`.pdfgetx3.cfg`, whereas -pdfgetn3 looks for :file:`pdfgetn3.cfg` and :file:`.pdfgetn3.cfg`. - -Please refer to the :doc:`tutorial section ` for -a step-by step processing of the example data files and for -demonstration of capabilities in PDFgetX3 and PDFgetN3. diff --git a/static_root/doc/pdfgetx/2.0.0/_sources/release.rst.txt b/static_root/doc/pdfgetx/2.0.0/_sources/release.rst.txt deleted file mode 100644 index 7ede93fa..00000000 --- a/static_root/doc/pdfgetx/2.0.0/_sources/release.rst.txt +++ /dev/null @@ -1,3 +0,0 @@ -.. index:: release notes - -.. mdinclude:: ../../CHANGELOG.md diff --git a/static_root/doc/pdfgetx/2.0.0/_sources/tutorial.rst.txt b/static_root/doc/pdfgetx/2.0.0/_sources/tutorial.rst.txt deleted file mode 100644 index 0d5c6f09..00000000 --- a/static_root/doc/pdfgetx/2.0.0/_sources/tutorial.rst.txt +++ /dev/null @@ -1,683 +0,0 @@ -Tutorial -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 -.. index:: example files -.. py:currentmodule:: diffpy.pdfgetx - -In this tutorial we will convert several X-ray powder diffraction -patterns to corresponding PDFs. Open a terminal on a Unix-based system -or a Command Prompt on Windows and navigate to the :file:`examples` -folder included with the PDFgetX3 distribution. The :file:`examples` -folder can be found in the parent "doc" directory relative to this -document or another option is to just search your file system for -one of the input files mentioned below. -The example files are also available at -|zipped-examples|. - - -.. index:: examples - -Nickel X-ray PDF ------------------------------------------------------------------------- - -predefined configuration file -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - - -Change to the :file:`Ni` directory. The file named -:file:`ni300mesh_300k_nor_1-5.chi` contains powder X-ray data -measured from nickel at the Advanced Photon Source beamline -6ID-D. The file contains two columns for the |twotheta| scattering -angles and X-ray intensities. The second file -:file:`kapton_bgrd_300k_nor_2-3.chi` contains the background -measurement, i.e., the intensities from an empty capillary. -Finally, the :file:`pdfgetx3.cfg` contains a complete configuration -parameters for converting the powder pattern to a PDF. Since all -processing parameters are already defined in the configuration file, -the first PDF calculation is very simple and involves running the -:ref:`pdfgetx3 ` program -with the powder data file as an argument:: - - $ pdfgetx3 ni300mesh_300k_nor_1-5.chi - -For the first run there should be no output on the screen, -however a new file, :file:`ni300mesh_300k_nor_1-5.gr` should appear -in the work directory. -We can use the :ref:`plotdata ` program, -included with this software, to plot the output data:: - - $ plotdata ni300mesh_300k_nor_1-5.gr - -This will open a graph window and start an `IPython`_ interactive session. -To exit and close the figure, type ``exit()`` on the IPython prompt. -Let's run the program again, but now with a -:option:`--verbose=info <--verbose>` -option, to show more details about the program actions. :: - - $ pdfgetx3 --verbose=info ni300mesh_300k_nor_1-5.chi - - INFO:applying pdfgetx3 defaults - INFO:set config.mode = xray - INFO:searching for default config file /home/user/.pdfgetx3.cfg - INFO:searching for default config file .pdfgetx3.cfg - INFO:searching for default config file pdfgetx3.cfg - INFO:loaded default config file pdfgetx3.cfg - INFO:reset config.twothetazero = 0.0 - INFO:parsing config file section [DEFAULT] - INFO:set config.dataformat = twotheta - INFO:set config.backgroundfile = kapton_bgrd_300k_nor_2-3.chi - INFO:set config.outputtypes = gr - INFO:set config.wavelength = 0.142774 - INFO:set config.composition = Ni - INFO:set config.qmaxinst = 26.5 - INFO:set config.qmax = 26.0 - INFO:set config.rmin = 0.0 - INFO:set config.rmax = 30.0 - INFO:set config.rstep = 0.01 - INFO:finished parsing config file - INFO:processing command line options - INFO:set config.verbose = info - INFO:finished with command line options - INFO:using 1 input files from the command line. - INFO:configuring PDFGetter mode 'xray' - INFO:calling config_xray - INFO:started PDF processing. - INFO:processing 'ni300mesh_300k_nor_1-5.chi' - INFO:resolved output file '' as 'ni300mesh_300k_nor_1-5.gr' - WARNING:ni300mesh_300k_nor_1-5.gr already exists. - WARNING:Use "--force=yes" or "--force=once" to overwrite. - INFO:elapsed time: 0.095 - -Here we can see what configuration files are searched, which of them -get loaded and what are the effective values of the processing -parameters. Unless the :option:`!--verbose` option is in effect, the -program will show only messages that have either WARNING or ERROR -importance. The warning line above indicates no output has been -written, because that file already exists. This safety check can be -overruled with the :option:`--force=yes <--force>` option, upon -which pdfgetx3 would overwrite any existing files. - -PDFgetX3 output files start with a header that lists all the processing -parameters and can be used as a valid configuration file with the -:option:`-c` option. Another option, :option:`--plot=[iq,sq,fq,gr] -<-p>` turns on plotting of the final PDF or of some other result. A -side effect of the :option:`!--plot` option is that pdfgetx3 starts in -an interactive mode, so the user can manipulate or save the plots. To -put it all together, we are now going to redo the original PDF and plot -its reduced total scattering function |FQ| and the PDF curve |Gr|. This -time the chi file is not necessary, because the input file is already -listed in the gr file that is now used as a custom configuration:: - - $ pdfgetx3 -c ni300mesh_300k_nor_1-5.gr --plot=fq,gr - - WARNING:ni300mesh_300k_nor_1-5.gr already exists. - WARNING:Use "--force=yes" or "--force=once" to overwrite. - - Variables related to PDF processing: - - pdfgetter -- PDFGetter used for calculation. - config -- configuration data used by PDFGetter. - See config.inputfiles for a list of inputs. - iraw -- matrix of input raw intensities with 2 rows per file. - iq sq fq gr -- intermediate results per each input file stored - as matrix rows. - - Functions: - - tuneconfig -- dynamically tune configuration variables. - processfiles -- process specified data files. - clearsession -- clear all elements from the inputfiles, iraw, - iq, sq, fq and gr variables. - plotdata -- plot all or selected columns from a text data file. - loaddata -- load all or selected columns from a text data file. - findfiles -- search for files matching the specified patterns. - - Use "%pdfgetx3" for a fresh run without exiting IPython. - In [1]: - -This will open a plot figure similar to - -.. image:: images/nickelfqgr.png - -Because of the :doc:`interactive mode ` implied by plotting, -the program enters an IPython session. -The IPython environment is preloaded with several extra functions -and variables related to the PDF processing. For example, the -:interactvar:`config` variable stores all the configuration parameters, -and its content can be displayed with the :py:func:`print` -function as :: - - In [1]: print(config) - - configfile = ni300mesh_300k_nor_1-5.gr - configsection = DEFAULT - dataformat = twotheta - ... - qmax = 26.0 - ... - -The :py:func:`.processfiles` function allows to redo the -whole calculation and plotting process for additional input files or -for new parameter values. To plot the |FQ| and |Gr| -curves calculated at |Qmax| = 22 |Ainv|, we can call -:py:func:`!processfiles` and pass it a keyword argument for -the new qmax as follows:: - - In [2]: processfiles(qmax=22) - - # the qmax parameter was updated to a new value, thus - In [3]: config.qmax - Out[3]: 22 - -There should be now two lines in each plot axis corresponding to -the results at |Qmax| equal 26 and 22 |Ainv|. To exit the program, -type ``exit()``. - - -processing from scratch -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -We have already encountered the command-line :option:`option -c <-c>` -for specifying a custom configuration file. A special argument "NONE", -will make pdfgetx3 ignore any configuration files and start up in a -default state. We can use this feature to process the nickel PDF as if -we did not have any configuration file:: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi - - WARNING:Nothing to do, use "-t" or "--plot" options. - ERROR:Configuration error: wavelength not specified. - ERROR:See "--help" for more hints. - -There is an error, for the wavelength is necessary to convert -the scattering angle |twotheta| to momentum transfer *Q*. The -X-ray wavelength was 0.142774 Å, which can be passed with the -:option:`-w, --wavelength <-w>` option:: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 - - ... - ERROR:Configuration error: Chemical composition not known. - ERROR:See "--help" for more hints. - -There is still an error. The PDF calculation needs an average -X-ray scattering factor of the material, which is obtained from -sample chemical composition. The composition can be specified -with the :option:`--composition` option. The example -below uses a "\\\\" character to indicate the command continues -on the next line. Such syntax works in Unix terminals, but -on Windows the command has to be typed all on a single line:: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \ - --composition=Ni - - WARNING:Nothing to do, use "-t" or "--plot" options. - ... - -There was no error message this time, but the program complains -about a lack of action. The pdfgetx3 program does not write any results -unless instructed by the :option:`-t, --outputtypes <-t>` option. -The outputtypes option recognizes the following result types: -"iq", "sq", "fq", "gr". One or more of these type strings, -separated by a comma, can be included with the -:option:`!-t` option, which will produce the corresponding -output files. An empty string, such as ``-t ""``, or ``-t NONE`` -may be used to clear any outputtypes defined in the configuration file, -and avoid the unseemly file-exists warnings. - -At this point, we will not write any output files, but will use the -:option:`--plot <-p>` option to display the calculated curves. The -:option:`!--plot` accepts the same arguments as outputtypes, so to -display the |FQ| and |Gr| curves we shall run :: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \ - --composition=Ni --plot=fq,gr - - WARNING:qmaxinst reset to last nonzero point qmaxinst=28.0865680161 - WARNING:qmax reset to the data boundary qmaxinst=28.0865680161 - -which should open the following plot window: - -.. image:: images/nickelfqgrnoisy.png - -The graphs look terrible. The PDF is very noisy and the |FQ| curve -shows a sudden break at about 27 |Ainv|. What happened? The powder -intensities are inaccurate at a very top of the detector angular range. -The interactive session is setup with -:interactvar:`iraw`, :interactvar:`iq`, :interactvar:`sq`, -:interactvar:`fq`, :interactvar:`gr` -variables for the original raw data and intermediate results. We -are going to plot the "iq" variable that has the input intensities -resampled on the *Q* grid. The matplotlib function -:py:func:`~matplotlib.pyplot.clf` clears the figure, -the iq variable is a two-row matrix with *Q* and *I* rows, and the -:py:func:`~matplotlib.pyplot.axis` -function lets us zoom to a given range:: - - In [1]: clf() - In [2]: plot(iq[0], iq[1]) - Out[2]: [] - In [3]: axis([20, 29, 0, 3000]) - Out[3]: [20, 29, 0, 3000] - -The graph shows a sudden drop in the raw intensities at 27 |Ainv|. -The :confval:`qmaxinst` variable defines a *Q* cutoff for a meaningful -instrument intensities and, to be on a safe side, we are going to set -it to 26.5 |Ainv| :: - - In [4]: processfiles(qmaxinst=26.5) - WARNING:qmax reset to the data boundary qmaxinst=26.5 - -The updated curves looks reasonable without any oscillations and -breakpoints. The :py:func:`.tuneconfig` function provides a -GUI-driven way for visualizing the processing parameters and their -effect on the results. Type ``tuneconfig()`` to execute the function, -which should open a new window with several sliders. Try to move -different sliders and see how do the |FQ| and |Gr| curves change. -The :confval:`rpoly` parameter controls the degree of data-correction -polynomial and is an approximate low-*r* bound of reliable *G* -values. Once the parameters are tuned, they may be set to -exact values. We will also turn on the writing of the |Gr| -curve and save it to an output file :file:`nicmd.gr`:: - - In [14]: config.qmax = 26 - In [15]: config.outputtypes = 'gr' - In [16]: config.output = 'nicmd' - In [17]: processfiles() - - -Platinum X-ray series ------------------------------------------------------------------------- - -PDFgetX3 has been designed to handle large series of data files. -With the fast area-detectors it is easy to measure hundreds of X-ray -patterns in a time or temperature series. Normally, these input -files need to be entered as command line arguments to the pdfgetx3 -program. This is usually no problem with Unix-like shells, which -expand filename patterns to a list of matching files. -However, such file generation is in general not available on Windows. -The input file names tend to include scan numbers which are useful -for selecting desired data, yet even with Unix shells it is -difficult to match a range of scan numbers -(`z-shell `_ being a notable exception). - -.. _my-findexamples: - -matching input files -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -The :program:`pdfgetx3` program includes a built-in function for finding -a set of input files. The command line arguments are normally taken as -input file names. However, if the :option:`-f, --find <-f>` option is -present, the arguments are understood as patterns and the program looks -for files that match ALL of them. Another option -:option:`-l, --list <-l>` makes pdfgetx3 print out the matching files -without any other action, which can be used to verify if the patterns -match intended files. - -We will try out this file search on platinum example files. Open a -terminal and navigate to the :file:`Pt` directory. There should be a -:file:`series` subdirectory with 6 chi files indexed from 903 to 908. -At first, let's stay in the :file:`Pt` directory and run the following -command :: - - $ pdfgetx3 --list --find - - Pt_bulk-00055-pdfgetx2.gr - Pt_bulk-00055-pdfgetx3.gr - Pt_bulk-00055.chi - empty_capillary-00032.chi - pdfgetx3.cfg - plotpdfcomparison.py - -Without any patterns the file search matches all files in the current -directory. Now let's try to add name patterns. There are few special -patterns, for example ``^`` matches at the beginning of the filename, -``$`` at the end and ```` matches a range of integer values from -*N* to *M*. The patterns containing ``^$<>`` need to be quoted as -these characters have special meaning in the shell. Here are some -examples how it works. - -Filenames containing "y":: - - $ pdfgetx3 --list --find y - empty_capillary-00032.chi - plotpdfcomparison.py - -Filenames that containing both "y" and "chi", here we use the -options :option:`!--list` and :option:`!--find` in an abbreviated -form :option:`!-l` and :option:`!-f`:: - - $ pdfgetx3 -lf y chi - empty_capillary-00032.chi - -Filenames that start with "e":: - - $ pdfgetx3 --list --find "^e" - empty_capillary-00032.chi - -Filenames that contain *character* "2":: - - $ pdfgetx3 --list --find 2 - Pt_bulk-00055-pdfgetx2.gr - empty_capillary-00032.chi - -Filenames that contain *numeric value* "2":: - - $ pdfgetx3 -lf "<2>" - Pt_bulk-00055-pdfgetx2.gr - -The special argument ``+`` starts a new group of patterns to -generate extra files when they cannot be all covered by -a single set of patterns. For example, to match files that -contain contain both "bulk" and "chi" substrings and then -also those that have "empty" and "chi" in their names, use:: - - $ pdfgetx3 -lf bulk chi + empty chi - Pt_bulk-00055.chi - empty_capillary-00032.chi - -When pattern groups overlap the resulting matches are -made unique and each file is listed only once :: - - $ pdfgetx3 -lf bulk chi + chi - Pt_bulk-00055.chi - empty_capillary-00032.chi - - -data search path -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -Each group of PDFgetX3 patterns can have one entry containing -forward slash "/" to specify a non-current path that is searched -for input files. The path specification affects the current and -the following pattern groups unless they provide their own path. -The chi files numbered "903" to "905" and "908" from the -:file:`series` subdirectory can be therefore matched using :: - - $ pdfgetx3 -lf series/ "<903-905>" + 908 - series/Pt_bulk_ramp03-00903.chi - series/Pt_bulk_ramp03-00904.chi - series/Pt_bulk_ramp03-00905.chi - series/Pt_bulk_ramp03-00908.chi - -The current directory can be selected using `./` :: - - $ pdfgetx3 -lf series/ 903 + ./ bulk chi - series/Pt_bulk_ramp03-00903.chi - Pt_bulk-00055.chi - -When additional pattern groups contain only the path -argument, they reuse the existing set of patterns. The -".chi"-ending files in the current and :file:`series` -directories can be thus found using :: - - $ pdfgetx3 -lf ".chi$" + series/ - Pt_bulk-00055.chi - empty_capillary-00032.chi - series/Pt_bulk_ramp03-00903.chi - series/Pt_bulk_ramp03-00904.chi - series/Pt_bulk_ramp03-00905.chi - series/Pt_bulk_ramp03-00906.chi - series/Pt_bulk_ramp03-00907.chi - series/Pt_bulk_ramp03-00908.chi - - -output file names -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -By default the output files are saved in the current directory. The -output path, can be changed with the :option:`-o, --output <-o>` option. -The :option:`!-o` recognizes several tokens that are replaced with -parts of the input file name, for example, "@b" expands to an -extension-stripped base name. In similar faction, "@o" is replaced -with the output type extension. Thus to generate PDFs for all files -in the :file:`series` directory and save them in the -:file:`series-gr` subfolder do :: - - $ pdfgetx3 --find series/ "<900-910>.chi" --output=series-gr/@b.@o - -The extension ".@o" is automatic when not included anywhere in the -output file name. Thus to process the Pt series at |Qmax| = 18 |Ainv| -while saving the results in the same folder, but with a "_qmax18" suffix -in their filenames do :: - - $ pdfgetx3 --find series/ "<900-910>.chi" --qmax=18 -o series-gr/@b_qmax18 - -For input file :file:`Pt_bulk_ramp03-00903.chi` the :option:`!-o` option -above expands to output path :file:`series-gr/Pt_bulk_ramp03-00903_qmax18.gr`. -The :file:`series-gr` directory should now contain 12 "gr" files, -6 of them processed at |Qmax| = 27 |Ainv| as given by configuration -file and 6 others processed at |Qmax| = 18 |Ainv|. - -.. seealso:: :option:`-o, --output <-o>` for a list of output tokens - -.. index:: tuneconfig (example) -.. _my-tuneconfig: - -Interactive tuning of parameters ------------------------------------------------------------------------- - -One of the most powerful features of PDFgetX3 is the ability to tune -PDF processing parameters in an interactive mode and immediately -visualize their effect on the results. To demonstrate this feature, -navigate to the :file:`Ni` directory in the shell and process -the nickel PDF while plotting the |FQ| and |Gr| curves. -Because of plotting the program will open an interactive IPython -session. The tuning mode can be then entered by calling the -:py:func:`.tuneconfig` -function from the IPython environment :: - - $ pdfgetx3 --plot=fq,gr ni300mesh_300k_nor_1-5.chi - ... - In [1]: tuneconfig() - -The -:py:func:`!tuneconfig` -function will by default add a second set of live lines -for the plotted curves and open a GUI dialog with sliders for the -tunable process parameters. Changing any slider would immediately -recalculate the PDF and update live lines in the plot. - -.. image:: images/tunenickelfqgr.png - -The *constant data scale* check-box rescales the result curves to a -constant maximum value. This is useful for assessing if a parameter -change produces different curve shape or if it just rescales the -results. The tunable parameters are described in the -:ref:`PDF parameters section `. -Only the active parameters are displayed in the tuneconfig GUI, -thus there would be no slider for the :confval:`bgscale` parameter -if PDF has been processed without any background data. - -By default the -:py:func:`!tuneconfig` -function displays the same curves as -specified by the :option:`--plot <-p>` option, however it can be -configured to show arbitrary intermediate results or even visualize -selected steps in the PDF processing. We shall demonstrate this by -showing a live-plot of the polynomial correction together with the final -PDF. At first, we shall use the :py:meth:`!describe` method of the -:py:func:`.pdfgetter` object to print out the chain of -transformations involved in the PDF processing and obtain a reference to -the transformation object *t4* that applies the polynomial correction. -The transformation object can be then included in a list of plot -identifiers that are passed to the :py:func:`!tuneconfig` function :: - - $ pdfgetx3 -i ni300mesh_300k_nor_1-5.chi - ... - Use "%pdfgetx3" for a fresh run without exiting IPython. - - In [1]: fig, ax = subplots(2) - In [2]: pdfgetter.describe() - 0 TransformTwoThetaToQA - convert x data from twotheta to Q in 1/A - 1 TransformQGridRegular - Remove the data outside the (qmin, qmaxinst) range - 2 TransformBackground - subtract background intensity - 3 TransformXrayASFnormChris - scale and normalize intensities by x-ray scattering factors - 4 TransformSQnormRPoly - Normalize S(Q) by fitting a polynomial - 5 TransformSQToFQ - Convert S(Q) to F(Q). - 6 TransformFQgrid - Resample F(Q) to a regular grid suitable for FFT - 7 TransformFQToGr - Convert F(Q) to G(r). - In [3]: t4 = pdfgetter.getTransformation(4) - In [4]: tuneconfig([t4, 'gr'], axeslist=ax) - In [5]: ax[0].legend(loc=2) - -The :py:func:`~matplotlib.pyplot.subplots` function above -is to create a new figure with 2 axes on top of each other. -Overall, the code above should display the following plot -and a GUI window: - -.. image:: images/tunenickelt4gr.png - -The tuning can be finished by clicking the ``Done`` button or closing the -tuneconfig GUI window. The parameter values can be thereafter adjusted -to a rounded values by setting an attribute of the :interactvar:`config` -object, for example:: - - In [5]: config.bgscale = 1.5 - -Finally, to save the new results, we shall first confirm -:confval:`outputtypes` have been correctly set and then use the -:py:func:`.processfiles` function to redo the calculations, plots and -data output for the updated configuration. Note that the -:py:func:`!processfiles` function accepts keyword arguments for -configuration parameters. This is used at line ``In [8]`` to -turn on the :confval:`force` flag and is in effect a shortcut -for an extra ``config.force = True`` statement. :: - - In [6]: config.outputtypes - Out[6]: ['gr'] - In [7]: processfiles() - WARNING:ni300mesh_300k_nor_1-5.gr already exists. - WARNING:Use "--force=yes" or "--force=once" to overwrite. - In [8]: processfiles(force=True) - -:file:`ni300mesh_300k_nor_1-5.gr` was successfully saved at an -updated configuration for there were no warnings after the last call. - - -Neutron PDF ------------------------------------------------------------------------- - -This example illustrates PDF extraction from -neutron powder data using :ref:`pdfgetn3 `. -Navigate to the :file:`n-Sapphire` directory in the shell. -The :file:`sapphire755.dat` file contains powder diffraction data from -sapphire (α-Al\ :sub:`2`\ O\ :sub:`3`) -measured at the constant-wavelength PEARL instrument -at the Delft University of Technology. -The :file:`pdfgetn3.cfg` configuration file specifies -processing parameters such as :confval:`wavelength`, -:confval:`twothetazero`, :confval:`composition`, and :confval:`mode`. - -To extract the sapphire neutron PDF run :: - - $ pdfgetn3 --verbose=info sapphire755.dat - - INFO:applying pdfgetn3 defaults - INFO:set config.mode = neutron - INFO:searching for default config file /home/user/.pdfgetn3.cfg - INFO:searching for default config file .pdfgetn3.cfg - INFO:searching for default config file pdfgetn3.cfg - INFO:loaded default config file pdfgetn3.cfg - INFO:reset config.twothetazero = 0.0 - INFO:parsing config file section [DEFAULT] - INFO:set config.dataformat = twotheta - INFO:set config.backgroundfile = - INFO:set config.outputtypes = fq, gr - INFO:set config.mode = neutron - INFO:set config.wavelength = 1.0989 - INFO:set config.twothetazero = -0.38 - INFO:set config.composition = Al2O3 - INFO:set config.qmaxinst = 11.2 - INFO:set config.qmax = 11.2 - INFO:set config.rmin = 0.0 - INFO:set config.rmax = 20.0 - INFO:set config.rstep = 0.01 - INFO:finished parsing config file - INFO:processing command line options - INFO:set config.verbose = info - INFO:finished with command line options - INFO:using 1 input files from the command line. - INFO:configuring PDFGetter mode 'neutron' - INFO:calling config_neutron - INFO:started PDF processing. - INFO:processing 'sapphire755.dat' - INFO:resolved output file '' as 'sapphire755.fq' - INFO:written outpufile sapphire755.fq - INFO:resolved output file '' as 'sapphire755.gr' - INFO:written outpufile sapphire755.gr - INFO:elapsed time: 0.097 - -This will produce two files :file:`sapphire755.fq`, :file:`sapphire755.gr` -for the |FQ| and |Gr| functions. -To compare them with expected results use :: - - $ plotdata sapphire755-expected.fq sapphire755.fq - $ plotdata sapphire755-expected.gr sapphire755.gr - - -Fit twothetazero ------------------------------------------------------------------------- - -For a good quality PDF it is essential to use powder patterns with -accurate values of *Q*. Some instruments may produce spectra with -a slightly offset scattering angle |twotheta| which -causes inaccurate *Q* and a noticeably worse PDF. -In this example we fit a constant-wavelength neutron PDF from nickel -together with the :confval:`twothetazero` correction parameter for -diffractometer offset. -The procedure can be used to calibrate the zero correction from -a standard sample and then use it for subsequent PDF extractions. -The protocol can be also applied to fit zero correction in -a full-fledged PDF refinement in case -the zero offset may change for different samples. - -This tutorial requires either Linux or Mac OS X platforms, -because the PDF fitting is conducted with -`diffpy.cmi `__, -which is not yet available for Windows. -If diffpy.cmi is not yet installed, -we recommend to use `Anaconda Python`_ and set up a dedicated -Anaconda environment *nbcmi* for this tutorial. -This can be accomplished using the following steps:: - - $ conda create -n nbcmi -c diffpy python=2 diffpy.cmi - $ conda activate nbcmi - $ python -m easy_install path/to/diffpy.pdfgetx-VERSION.egg - -When these prerequisites are in place, -change to the :file:`n-twothetazero-fit` directory -and open the self documented Jupyter notebook as follows :: - - $ jupyter notebook fit-twothetazero.ipynb - -.. |tthzero| replace:: :confval:`!twothetazero` - -The notebook sets up and executes several PDF refinements and -compares the results from fits on uncorrected data and with -a fitted |tthzero|. -After running all cells the notebook should produce similar graphs -as in the figure below. - -.. figure:: images/twothetazerofit.* - - Refinement of nickel neutron PDF for **(a)** uncorrected data - and **(b)** with a refined zero correction. - The extracted PDFs are plotted as blue circles, - simulated PDFs as red lines and - the difference is plotted offset in green below. - -The final refined zero offset in the notebook should be approximately -0.36°. -The correction produces experimental PDF with a remarkably better fit -residual R\ :sub:`w` which is lowered from (a) 0.18 to (b) 0.05. diff --git a/static_root/doc/pdfgetx/2.0.0/_static/ajax-loader.gif b/static_root/doc/pdfgetx/2.0.0/_static/ajax-loader.gif deleted file mode 100644 index 61faf8ca..00000000 Binary files a/static_root/doc/pdfgetx/2.0.0/_static/ajax-loader.gif and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.0.0/_static/basic.css b/static_root/doc/pdfgetx/2.0.0/_static/basic.css deleted file mode 100644 index 19ced105..00000000 --- a/static_root/doc/pdfgetx/2.0.0/_static/basic.css +++ /dev/null @@ -1,665 +0,0 @@ -/* - * basic.css - * ~~~~~~~~~ - * - * Sphinx stylesheet -- basic theme. - * - * :copyright: Copyright 2007-2018 by the Sphinx team, see AUTHORS. - * :license: BSD, see LICENSE for details. - * - */ - -/* -- main layout ----------------------------------------------------------- */ - -div.clearer { - clear: both; 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-} - -p.admonition-title:after { - content: ":"; -} - -pre { - padding: 5px; - background-color: #eeffcc; - color: #333333; - line-height: 120%; - border: 1px solid #ac9; - border-left: none; - border-right: none; -} - -code { - background-color: #ecf0f3; - padding: 0 1px 0 1px; - font-size: 0.95em; -} - -th { - background-color: #ede; -} - -.warning code { - background: #efc2c2; -} - -.note code { - background: #d6d6d6; -} - -.viewcode-back { - font-family: 'Palatino', 'Palatino Linotype', 'URW Palladio L', 'Century Schoolbook L', 'Georgia', serif; -} - -div.viewcode-block:target { - background-color: #f4debf; - border-top: 1px solid #ac9; - border-bottom: 1px solid #ac9; -} - -div.code-block-caption { - color: #efefef; - background-color: #1c4e63; -} \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.0.0/_static/comment-bright.png b/static_root/doc/pdfgetx/2.0.0/_static/comment-bright.png deleted file mode 100644 index 15e27edb..00000000 Binary files a/static_root/doc/pdfgetx/2.0.0/_static/comment-bright.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.0.0/_static/comment-close.png b/static_root/doc/pdfgetx/2.0.0/_static/comment-close.png deleted file mode 100644 index 4d91bcf5..00000000 Binary files a/static_root/doc/pdfgetx/2.0.0/_static/comment-close.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.0.0/_static/comment.png b/static_root/doc/pdfgetx/2.0.0/_static/comment.png deleted file mode 100644 index dfbc0cbd..00000000 Binary files a/static_root/doc/pdfgetx/2.0.0/_static/comment.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.0.0/_static/copybutton.js b/static_root/doc/pdfgetx/2.0.0/_static/copybutton.js deleted file mode 100644 index ca9f489f..00000000 --- a/static_root/doc/pdfgetx/2.0.0/_static/copybutton.js +++ /dev/null @@ -1,57 +0,0 @@ -$(document).ready(function() { - /* Add a [>>>] button on the top-right corner of code samples to hide - * the >>> and ... prompts and the output and thus make the code - * copyable. */ - var div = $('.highlight-python .highlight,' + - '.highlight-pycon .highlight,' + - '.highlight-python3 .highlight') - var pre = div.find('pre'); - - // get the styles from the current theme - pre.parent().parent().css('position', 'relative'); - var hide_text = 'Hide the prompts and output'; - var show_text = 'Show the prompts and output'; - var border_width = pre.css('border-top-width'); - var border_style = pre.css('border-top-style'); - var border_color = pre.css('border-top-color'); - var button_styles = { - 'cursor':'pointer', 'position': 'absolute', 'top': '0', 'right': '0', - 'border-color': border_color, 'border-style': border_style, - 'border-width': border_width, 'color': border_color, 'text-size': '75%', - 'font-family': 'monospace', 'padding-left': '0.2em', 'padding-right': '0.2em', - 'border-radius': '0 3px 0 0' - } - - // create and add the button to all the code blocks that contain >>> - div.each(function(index) { - var jthis = $(this); - if (jthis.find('.gp').length > 0) { - var button = $('>>>'); - button.css(button_styles) - button.attr('title', hide_text); - jthis.prepend(button); - } - // tracebacks (.gt) contain bare text elements that need to be - // wrapped in a span to work with .nextUntil() (see later) - jthis.find('pre:has(.gt)').contents().filter(function() { - return ((this.nodeType == 3) && (this.data.trim().length > 0)); - }).wrap(''); - }); - - // define the behavior of the button when it's clicked - $('.copybutton').toggle( - function() { - var button = $(this); - button.parent().find('.go, .gp, .gt').hide(); - button.next('pre').find('.gt').nextUntil('.gp, .go').css('visibility', 'hidden'); - button.css('text-decoration', 'line-through'); - button.attr('title', show_text); - }, - function() { - var button = $(this); - button.parent().find('.go, .gp, .gt').show(); - button.next('pre').find('.gt').nextUntil('.gp, .go').css('visibility', 'visible'); - button.css('text-decoration', 'none'); - button.attr('title', hide_text); - }); -}); diff --git a/static_root/doc/pdfgetx/2.0.0/_static/doctools.js b/static_root/doc/pdfgetx/2.0.0/_static/doctools.js deleted file mode 100644 index 4a6e2368..00000000 --- a/static_root/doc/pdfgetx/2.0.0/_static/doctools.js +++ /dev/null @@ -1,315 +0,0 @@ -/* - * doctools.js - * ~~~~~~~~~~~ - * - * Sphinx JavaScript utilities for all documentation. - * - * :copyright: Copyright 2007-2018 by the Sphinx team, see AUTHORS. - * :license: BSD, see LICENSE for details. - * - */ - -/** - * select a different prefix for underscore - */ -$u = _.noConflict(); - -/** - * make the code below compatible with browsers without - * an installed firebug like debugger -if (!window.console || !console.firebug) { - var names = ["log", "debug", "info", "warn", "error", "assert", "dir", - "dirxml", "group", "groupEnd", "time", "timeEnd", "count", "trace", - "profile", "profileEnd"]; - window.console = {}; - for (var i = 0; i < names.length; ++i) - window.console[names[i]] = function() {}; -} - */ - -/** - * small helper function to urldecode strings - */ -jQuery.urldecode = function(x) { - return decodeURIComponent(x).replace(/\+/g, ' '); -}; - -/** - * small helper function to urlencode strings - */ -jQuery.urlencode = encodeURIComponent; - -/** - * This function returns the parsed url parameters of the - * current request. Multiple values per key are supported, - * it will always return arrays of strings for the value parts. - */ -jQuery.getQueryParameters = function(s) { - if (typeof s === 'undefined') - s = document.location.search; - var parts = s.substr(s.indexOf('?') + 1).split('&'); - var result = {}; - for (var i = 0; i < parts.length; i++) { - var tmp = parts[i].split('=', 2); - var key = jQuery.urldecode(tmp[0]); - var value = jQuery.urldecode(tmp[1]); - if (key in result) - result[key].push(value); - else - result[key] = [value]; - } - return result; -}; - -/** - * highlight a given string on a jquery object by wrapping it in - * span elements with the given class name. - */ -jQuery.fn.highlightText = function(text, className) { - function highlight(node, addItems) { - if (node.nodeType === 3) { - var val = node.nodeValue; - var pos = val.toLowerCase().indexOf(text); - if (pos >= 0 && - !jQuery(node.parentNode).hasClass(className) && - !jQuery(node.parentNode).hasClass("nohighlight")) { - var span; - var isInSVG = jQuery(node).closest("body, svg, foreignObject").is("svg"); - if (isInSVG) { - span = document.createElementNS("http://www.w3.org/2000/svg", "tspan"); - } else { - span = document.createElement("span"); - span.className = className; - } - span.appendChild(document.createTextNode(val.substr(pos, text.length))); - node.parentNode.insertBefore(span, node.parentNode.insertBefore( - document.createTextNode(val.substr(pos + text.length)), - node.nextSibling)); - node.nodeValue = val.substr(0, pos); - if (isInSVG) { - var bbox = span.getBBox(); - var rect = document.createElementNS("http://www.w3.org/2000/svg", "rect"); - rect.x.baseVal.value = bbox.x; - rect.y.baseVal.value = bbox.y; - rect.width.baseVal.value = bbox.width; - rect.height.baseVal.value = bbox.height; - rect.setAttribute('class', className); - var parentOfText = node.parentNode.parentNode; - addItems.push({ - "parent": node.parentNode, - "target": rect}); - } - } - } - else if (!jQuery(node).is("button, select, textarea")) { - jQuery.each(node.childNodes, function() { - highlight(this, addItems); - }); - } - } - var addItems = []; - var result = this.each(function() { - highlight(this, addItems); - }); - for (var i = 0; i < addItems.length; ++i) { - jQuery(addItems[i].parent).before(addItems[i].target); - } - return result; -}; - -/* - * backward compatibility for jQuery.browser - * This will be supported until firefox bug is fixed. - */ -if (!jQuery.browser) { - jQuery.uaMatch = function(ua) { - ua = ua.toLowerCase(); - - var match = /(chrome)[ \/]([\w.]+)/.exec(ua) || - /(webkit)[ \/]([\w.]+)/.exec(ua) || - /(opera)(?:.*version|)[ \/]([\w.]+)/.exec(ua) || - /(msie) ([\w.]+)/.exec(ua) || - ua.indexOf("compatible") < 0 && /(mozilla)(?:.*? rv:([\w.]+)|)/.exec(ua) || - []; - - return { - browser: match[ 1 ] || "", - version: match[ 2 ] || "0" - }; - }; - jQuery.browser = {}; - jQuery.browser[jQuery.uaMatch(navigator.userAgent).browser] = true; -} - -/** - * Small JavaScript module for the documentation. - */ -var Documentation = { - - init : function() { - this.fixFirefoxAnchorBug(); - this.highlightSearchWords(); - this.initIndexTable(); - - this.initOnKeyListeners(); - - }, - - /** - * i18n support - */ - TRANSLATIONS : {}, - PLURAL_EXPR : function(n) { return n === 1 ? 0 : 1; }, - LOCALE : 'unknown', - - // gettext and ngettext don't access this so that the functions - // can safely bound to a different name (_ = Documentation.gettext) - gettext : function(string) { - var translated = Documentation.TRANSLATIONS[string]; - if (typeof translated === 'undefined') - return string; - return (typeof translated === 'string') ? translated : translated[0]; - }, - - ngettext : function(singular, plural, n) { - var translated = Documentation.TRANSLATIONS[singular]; - if (typeof translated === 'undefined') - return (n == 1) ? singular : plural; - return translated[Documentation.PLURALEXPR(n)]; - }, - - addTranslations : function(catalog) { - for (var key in catalog.messages) - this.TRANSLATIONS[key] = catalog.messages[key]; - this.PLURAL_EXPR = new Function('n', 'return +(' + catalog.plural_expr + ')'); - this.LOCALE = catalog.locale; - }, - - /** - * add context elements like header anchor links - */ - addContextElements : function() { - $('div[id] > :header:first').each(function() { - $('\u00B6'). - attr('href', '#' + this.id). - attr('title', _('Permalink to this headline')). - appendTo(this); - }); - $('dt[id]').each(function() { - $('\u00B6'). - attr('href', '#' + this.id). - attr('title', _('Permalink to this definition')). - appendTo(this); - }); - }, - - /** - * workaround a firefox stupidity - * see: https://bugzilla.mozilla.org/show_bug.cgi?id=645075 - */ - fixFirefoxAnchorBug : function() { - if (document.location.hash && $.browser.mozilla) - window.setTimeout(function() { - document.location.href += ''; - }, 10); - }, - - /** - * highlight the search words provided in the url in the text - */ - highlightSearchWords : function() { - var params = $.getQueryParameters(); - var terms = (params.highlight) ? params.highlight[0].split(/\s+/) : []; - if (terms.length) { - var body = $('div.body'); - if (!body.length) { - body = $('body'); - } - window.setTimeout(function() { - $.each(terms, function() { - body.highlightText(this.toLowerCase(), 'highlighted'); - }); - }, 10); - $('

    ' + _('Hide Search Matches') + '

    ') - .appendTo($('#searchbox')); - } - }, - - /** - * init the domain index toggle buttons - */ - initIndexTable : function() { - var togglers = $('img.toggler').click(function() { - var src = $(this).attr('src'); - var idnum = $(this).attr('id').substr(7); - $('tr.cg-' + idnum).toggle(); - if (src.substr(-9) === 'minus.png') - $(this).attr('src', src.substr(0, src.length-9) + 'plus.png'); - else - $(this).attr('src', src.substr(0, src.length-8) + 'minus.png'); - }).css('display', ''); - if (DOCUMENTATION_OPTIONS.COLLAPSE_INDEX) { - togglers.click(); - } - }, - - /** - * helper function to hide the search marks again - */ - hideSearchWords : function() { - $('#searchbox .highlight-link').fadeOut(300); - $('span.highlighted').removeClass('highlighted'); - }, - - /** - * make the url absolute - */ - makeURL : function(relativeURL) { - return DOCUMENTATION_OPTIONS.URL_ROOT + '/' + relativeURL; - }, - - /** - * get the current relative url - */ - getCurrentURL : function() { - var path = document.location.pathname; - var parts = path.split(/\//); - $.each(DOCUMENTATION_OPTIONS.URL_ROOT.split(/\//), function() { - if (this === '..') - parts.pop(); - }); - var url = parts.join('/'); - return path.substring(url.lastIndexOf('/') + 1, path.length - 1); - }, - - initOnKeyListeners: function() { - $(document).keyup(function(event) { - var activeElementType = document.activeElement.tagName; - // don't navigate when in search box or textarea - if (activeElementType !== 'TEXTAREA' && activeElementType !== 'INPUT' && activeElementType !== 'SELECT') { - switch (event.keyCode) { - case 37: // left - var prevHref = $('link[rel="prev"]').prop('href'); - if (prevHref) { - window.location.href = prevHref; - return false; - } - case 39: // right - var nextHref = $('link[rel="next"]').prop('href'); - if (nextHref) { - window.location.href = nextHref; - return false; - } - } - } - }); - } -}; - -// quick alias for translations -_ = Documentation.gettext; - -$(document).ready(function() { - Documentation.init(); -}); \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.0.0/_static/documentation_options.js b/static_root/doc/pdfgetx/2.0.0/_static/documentation_options.js deleted file mode 100644 index c18483d9..00000000 --- a/static_root/doc/pdfgetx/2.0.0/_static/documentation_options.js +++ /dev/null @@ -1,9 +0,0 @@ -var DOCUMENTATION_OPTIONS = { - URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'), - VERSION: '2.0.0', - LANGUAGE: 'None', - COLLAPSE_INDEX: false, - FILE_SUFFIX: '.html', - HAS_SOURCE: true, - SOURCELINK_SUFFIX: '.txt' -}; \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.0.0/_static/down-pressed.png b/static_root/doc/pdfgetx/2.0.0/_static/down-pressed.png deleted file mode 100644 index 5756c8ca..00000000 Binary files a/static_root/doc/pdfgetx/2.0.0/_static/down-pressed.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.0.0/_static/down.png b/static_root/doc/pdfgetx/2.0.0/_static/down.png deleted file mode 100644 index 1b3bdad2..00000000 Binary files a/static_root/doc/pdfgetx/2.0.0/_static/down.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.0.0/_static/favicon.png b/static_root/doc/pdfgetx/2.0.0/_static/favicon.png deleted file mode 100644 index 93e4a02c..00000000 Binary files a/static_root/doc/pdfgetx/2.0.0/_static/favicon.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.0.0/_static/file.png b/static_root/doc/pdfgetx/2.0.0/_static/file.png deleted file mode 100644 index a858a410..00000000 Binary files a/static_root/doc/pdfgetx/2.0.0/_static/file.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.0.0/_static/jquery-3.2.1.js b/static_root/doc/pdfgetx/2.0.0/_static/jquery-3.2.1.js deleted file mode 100644 index d2d8ca47..00000000 --- a/static_root/doc/pdfgetx/2.0.0/_static/jquery-3.2.1.js +++ /dev/null @@ -1,10253 +0,0 @@ -/*! - * jQuery JavaScript Library v3.2.1 - * https://jquery.com/ - * - * Includes Sizzle.js - * https://sizzlejs.com/ - * - * Copyright JS Foundation and other contributors - * Released under the MIT license - * https://jquery.org/license - * - * Date: 2017-03-20T18:59Z - */ -( function( global, factory ) { - - "use strict"; - - if ( typeof module === "object" && typeof module.exports === "object" ) { - - // For CommonJS and CommonJS-like environments where a proper `window` - // is present, execute the factory and get jQuery. - // For environments that do not have a `window` with a `document` - // (such as Node.js), expose a factory as module.exports. - // This accentuates the need for the creation of a real `window`. - // e.g. var jQuery = require("jquery")(window); - // See ticket #14549 for more info. - module.exports = global.document ? - factory( global, true ) : - function( w ) { - if ( !w.document ) { - throw new Error( "jQuery requires a window with a document" ); - } - return factory( w ); - }; - } else { - factory( global ); - } - -// Pass this if window is not defined yet -} )( typeof window !== "undefined" ? window : this, function( window, noGlobal ) { - -// Edge <= 12 - 13+, Firefox <=18 - 45+, IE 10 - 11, Safari 5.1 - 9+, iOS 6 - 9.1 -// throw exceptions when non-strict code (e.g., ASP.NET 4.5) accesses strict mode -// arguments.callee.caller (trac-13335). But as of jQuery 3.0 (2016), strict mode should be common -// enough that all such attempts are guarded in a try block. -"use strict"; - -var arr = []; - -var document = window.document; - -var getProto = Object.getPrototypeOf; - -var slice = arr.slice; - -var concat = arr.concat; - -var push = arr.push; - -var indexOf = arr.indexOf; - -var class2type = {}; - -var toString = class2type.toString; - -var hasOwn = class2type.hasOwnProperty; - -var fnToString = hasOwn.toString; - -var ObjectFunctionString = fnToString.call( Object ); - -var support = {}; - - - - function DOMEval( code, doc ) { - doc = doc || document; - - var script = doc.createElement( "script" ); - - script.text = code; - doc.head.appendChild( script ).parentNode.removeChild( script ); - } -/* global Symbol */ -// Defining this global in .eslintrc.json would create a danger of using the global -// unguarded in another place, it seems safer to define global only for this module - - - -var - version = "3.2.1", - - // Define a local copy of jQuery - jQuery = function( selector, context ) { - - // The jQuery object is actually just the init constructor 'enhanced' - // Need init if jQuery is called (just allow error to be thrown if not included) - return new jQuery.fn.init( selector, context ); - }, - - // Support: Android <=4.0 only - // Make sure we trim BOM and NBSP - rtrim = /^[\s\uFEFF\xA0]+|[\s\uFEFF\xA0]+$/g, - - // Matches dashed string for camelizing - rmsPrefix = /^-ms-/, - rdashAlpha = /-([a-z])/g, - - // Used by jQuery.camelCase as callback to replace() - fcamelCase = function( all, letter ) { - return letter.toUpperCase(); - }; - -jQuery.fn = jQuery.prototype = { - - // The current version of jQuery being used - jquery: version, - - constructor: jQuery, - - // The default length of a jQuery object is 0 - length: 0, - - toArray: function() { - return slice.call( this ); - }, - - // Get the Nth element in the matched element set OR - // Get the whole matched element set as a clean array - get: function( num ) { - - // Return all the elements in a clean array - if ( num == null ) { - return slice.call( this ); - } - - // Return just the one element from the set - return num < 0 ? this[ num + this.length ] : this[ num ]; - }, - - // Take an array of elements and push it onto the stack - // (returning the new matched element set) - pushStack: function( elems ) { - - // Build a new jQuery matched element set - var ret = jQuery.merge( this.constructor(), elems ); - - // Add the old object onto the stack (as a reference) - ret.prevObject = this; - - // Return the newly-formed element set - return ret; - }, - - // Execute a callback for every element in the matched set. - each: function( callback ) { - return jQuery.each( this, callback ); - }, - - map: function( callback ) { - return this.pushStack( jQuery.map( this, function( elem, i ) { - return callback.call( elem, i, elem ); - } ) ); - }, - - slice: function() { - return this.pushStack( slice.apply( this, arguments ) ); - }, - - first: function() { - return this.eq( 0 ); - }, - - last: function() { - return this.eq( -1 ); - }, - - eq: function( i ) { - var len = this.length, - j = +i + ( i < 0 ? len : 0 ); - return this.pushStack( j >= 0 && j < len ? [ this[ j ] ] : [] ); - }, - - end: function() { - return this.prevObject || this.constructor(); - }, - - // For internal use only. - // Behaves like an Array's method, not like a jQuery method. - push: push, - sort: arr.sort, - splice: arr.splice -}; - -jQuery.extend = jQuery.fn.extend = function() { - var options, name, src, copy, copyIsArray, clone, - target = arguments[ 0 ] || {}, - i = 1, - length = arguments.length, - deep = false; - - // Handle a deep copy situation - if ( typeof target === "boolean" ) { - deep = target; - - // Skip the boolean and the target - target = arguments[ i ] || {}; - i++; - } - - // Handle case when target is a string or something (possible in deep copy) - if ( typeof target !== "object" && !jQuery.isFunction( target ) ) { - target = {}; - } - - // Extend jQuery itself if only one argument is passed - if ( i === length ) { - target = this; - i--; - } - - for ( ; i < length; i++ ) { - - // Only deal with non-null/undefined values - if ( ( options = arguments[ i ] ) != null ) { - - // Extend the base object - for ( name in options ) { - src = target[ name ]; - copy = options[ name ]; - - // Prevent never-ending loop - if ( target === copy ) { - continue; - } - - // Recurse if we're merging plain objects or arrays - if ( deep && copy && ( jQuery.isPlainObject( copy ) || - ( copyIsArray = Array.isArray( copy ) ) ) ) { - - if ( copyIsArray ) { - copyIsArray = false; - clone = src && Array.isArray( src ) ? src : []; - - } else { - clone = src && jQuery.isPlainObject( src ) ? src : {}; - } - - // Never move original objects, clone them - target[ name ] = jQuery.extend( deep, clone, copy ); - - // Don't bring in undefined values - } else if ( copy !== undefined ) { - target[ name ] = copy; - } - } - } - } - - // Return the modified object - return target; -}; - -jQuery.extend( { - - // Unique for each copy of jQuery on the page - expando: "jQuery" + ( version + Math.random() ).replace( /\D/g, "" ), - - // Assume jQuery is ready without the ready module - isReady: true, - - error: function( msg ) { - throw new Error( msg ); - }, - - noop: function() {}, - - isFunction: function( obj ) { - return jQuery.type( obj ) === "function"; - }, - - isWindow: function( obj ) { - return obj != null && obj === obj.window; - }, - - isNumeric: function( obj ) { - - // As of jQuery 3.0, isNumeric is limited to - // strings and numbers (primitives or objects) - // that can be coerced to finite numbers (gh-2662) - var type = jQuery.type( obj ); - return ( type === "number" || type === "string" ) && - - // parseFloat NaNs numeric-cast false positives ("") - // ...but misinterprets leading-number strings, particularly hex literals ("0x...") - // subtraction forces infinities to NaN - !isNaN( obj - parseFloat( obj ) ); - }, - - isPlainObject: function( obj ) { - var proto, Ctor; - - // Detect obvious negatives - // Use toString instead of jQuery.type to catch host objects - if ( !obj || toString.call( obj ) !== "[object Object]" ) { - return false; - } - - proto = getProto( obj ); - - // Objects with no prototype (e.g., `Object.create( null )`) are plain - if ( !proto ) { - return true; - } - - // Objects with prototype are plain iff they were constructed by a global Object function - Ctor = hasOwn.call( proto, "constructor" ) && proto.constructor; - return typeof Ctor === "function" && fnToString.call( Ctor ) === ObjectFunctionString; - }, - - isEmptyObject: function( obj ) { - - /* eslint-disable no-unused-vars */ - // See https://github.com/eslint/eslint/issues/6125 - var name; - - for ( name in obj ) { - return false; - } - return true; - }, - - type: function( obj ) { - if ( obj == null ) { - return obj + ""; - } - - // Support: Android <=2.3 only (functionish RegExp) - return typeof obj === "object" || typeof obj === "function" ? - class2type[ toString.call( obj ) ] || "object" : - typeof obj; - }, - - // Evaluates a script in a global context - globalEval: function( code ) { - DOMEval( code ); - }, - - // Convert dashed to camelCase; used by the css and data modules - // Support: IE <=9 - 11, Edge 12 - 13 - // Microsoft forgot to hump their vendor prefix (#9572) - camelCase: function( string ) { - return string.replace( rmsPrefix, "ms-" ).replace( rdashAlpha, fcamelCase ); - }, - - each: function( obj, callback ) { - var length, i = 0; - - if ( isArrayLike( obj ) ) { - length = obj.length; - for ( ; i < length; i++ ) { - if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) { - break; - } - } - } else { - for ( i in obj ) { - if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) { - break; - } - } - } - - return obj; - }, - - // Support: Android <=4.0 only - trim: function( text ) { - return text == null ? - "" : - ( text + "" ).replace( rtrim, "" ); - }, - - // results is for internal usage only - makeArray: function( arr, results ) { - var ret = results || []; - - if ( arr != null ) { - if ( isArrayLike( Object( arr ) ) ) { - jQuery.merge( ret, - typeof arr === "string" ? - [ arr ] : arr - ); - } else { - push.call( ret, arr ); - } - } - - return ret; - }, - - inArray: function( elem, arr, i ) { - return arr == null ? -1 : indexOf.call( arr, elem, i ); - }, - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - merge: function( first, second ) { - var len = +second.length, - j = 0, - i = first.length; - - for ( ; j < len; j++ ) { - first[ i++ ] = second[ j ]; - } - - first.length = i; - - return first; - }, - - grep: function( elems, callback, invert ) { - var callbackInverse, - matches = [], - i = 0, - length = elems.length, - callbackExpect = !invert; - - // Go through the array, only saving the items - // that pass the validator function - for ( ; i < length; i++ ) { - callbackInverse = !callback( elems[ i ], i ); - if ( callbackInverse !== callbackExpect ) { - matches.push( elems[ i ] ); - } - } - - return matches; - }, - - // arg is for internal usage only - map: function( elems, callback, arg ) { - var length, value, - i = 0, - ret = []; - - // Go through the array, translating each of the items to their new values - if ( isArrayLike( elems ) ) { - length = elems.length; - for ( ; i < length; i++ ) { - value = callback( elems[ i ], i, arg ); - - if ( value != null ) { - ret.push( value ); - } - } - - // Go through every key on the object, - } else { - for ( i in elems ) { - value = callback( elems[ i ], i, arg ); - - if ( value != null ) { - ret.push( value ); - } - } - } - - // Flatten any nested arrays - return concat.apply( [], ret ); - }, - - // A global GUID counter for objects - guid: 1, - - // Bind a function to a context, optionally partially applying any - // arguments. - proxy: function( fn, context ) { - var tmp, args, proxy; - - if ( typeof context === "string" ) { - tmp = fn[ context ]; - context = fn; - fn = tmp; - } - - // Quick check to determine if target is callable, in the spec - // this throws a TypeError, but we will just return undefined. - if ( !jQuery.isFunction( fn ) ) { - return undefined; - } - - // Simulated bind - args = slice.call( arguments, 2 ); - proxy = function() { - return fn.apply( context || this, args.concat( slice.call( arguments ) ) ); - }; - - // Set the guid of unique handler to the same of original handler, so it can be removed - proxy.guid = fn.guid = fn.guid || jQuery.guid++; - - return proxy; - }, - - now: Date.now, - - // jQuery.support is not used in Core but other projects attach their - // properties to it so it needs to exist. - support: support -} ); - -if ( typeof Symbol === "function" ) { - jQuery.fn[ Symbol.iterator ] = arr[ Symbol.iterator ]; -} - -// Populate the class2type map -jQuery.each( "Boolean Number String Function Array Date RegExp Object Error Symbol".split( " " ), -function( i, name ) { - class2type[ "[object " + name + "]" ] = name.toLowerCase(); -} ); - -function isArrayLike( obj ) { - - // Support: real iOS 8.2 only (not reproducible in simulator) - // `in` check used to prevent JIT error (gh-2145) - // hasOwn isn't used here due to false negatives - // regarding Nodelist length in IE - var length = !!obj && "length" in obj && obj.length, - type = jQuery.type( obj ); - - if ( type === "function" || jQuery.isWindow( obj ) ) { - return false; - } - - return type === "array" || length === 0 || - typeof length === "number" && length > 0 && ( length - 1 ) in obj; -} -var Sizzle = -/*! - * Sizzle CSS Selector Engine v2.3.3 - * https://sizzlejs.com/ - * - * Copyright jQuery Foundation and other contributors - * Released under the MIT license - * http://jquery.org/license - * - * Date: 2016-08-08 - */ -(function( window ) { - -var i, - support, - Expr, - getText, - isXML, - tokenize, - compile, - select, - outermostContext, - sortInput, - hasDuplicate, - - // Local document vars - setDocument, - document, - docElem, - documentIsHTML, - rbuggyQSA, - rbuggyMatches, - matches, - contains, - - // Instance-specific data - expando = "sizzle" + 1 * new Date(), - preferredDoc = window.document, - dirruns = 0, - done = 0, - classCache = createCache(), - tokenCache = createCache(), - compilerCache = createCache(), - sortOrder = function( a, b ) { - if ( a === b ) { - hasDuplicate = true; - } - return 0; - }, - - // Instance methods - hasOwn = ({}).hasOwnProperty, - arr = [], - pop = arr.pop, - push_native = arr.push, - push = arr.push, - slice = arr.slice, - // Use a stripped-down indexOf as it's faster than native - // https://jsperf.com/thor-indexof-vs-for/5 - indexOf = function( list, elem ) { - var i = 0, - len = list.length; - for ( ; i < len; i++ ) { - if ( list[i] === elem ) { - return i; - } - } - return -1; - }, - - booleans = "checked|selected|async|autofocus|autoplay|controls|defer|disabled|hidden|ismap|loop|multiple|open|readonly|required|scoped", - - // Regular expressions - - // http://www.w3.org/TR/css3-selectors/#whitespace - whitespace = "[\\x20\\t\\r\\n\\f]", - - // http://www.w3.org/TR/CSS21/syndata.html#value-def-identifier - identifier = "(?:\\\\.|[\\w-]|[^\0-\\xa0])+", - - // Attribute selectors: http://www.w3.org/TR/selectors/#attribute-selectors - attributes = "\\[" + whitespace + "*(" + identifier + ")(?:" + whitespace + - // Operator (capture 2) - "*([*^$|!~]?=)" + whitespace + - // "Attribute values must be CSS identifiers [capture 5] or strings [capture 3 or capture 4]" - "*(?:'((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\"|(" + identifier + "))|)" + whitespace + - "*\\]", - - pseudos = ":(" + identifier + ")(?:\\((" + - // To reduce the number of selectors needing tokenize in the preFilter, prefer arguments: - // 1. quoted (capture 3; capture 4 or capture 5) - "('((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\")|" + - // 2. simple (capture 6) - "((?:\\\\.|[^\\\\()[\\]]|" + attributes + ")*)|" + - // 3. anything else (capture 2) - ".*" + - ")\\)|)", - - // Leading and non-escaped trailing whitespace, capturing some non-whitespace characters preceding the latter - rwhitespace = new RegExp( whitespace + "+", "g" ), - rtrim = new RegExp( "^" + whitespace + "+|((?:^|[^\\\\])(?:\\\\.)*)" + whitespace + "+$", "g" ), - - rcomma = new RegExp( "^" + whitespace + "*," + whitespace + "*" ), - rcombinators = new RegExp( "^" + whitespace + "*([>+~]|" + whitespace + ")" + whitespace + "*" ), - - rattributeQuotes = new RegExp( "=" + whitespace + "*([^\\]'\"]*?)" + whitespace + "*\\]", "g" ), - - rpseudo = new RegExp( pseudos ), - ridentifier = new RegExp( "^" + identifier + "$" ), - - matchExpr = { - "ID": new RegExp( "^#(" + identifier + ")" ), - "CLASS": new RegExp( "^\\.(" + identifier + ")" ), - "TAG": new RegExp( "^(" + identifier + "|[*])" ), - "ATTR": new RegExp( "^" + attributes ), - "PSEUDO": new RegExp( "^" + pseudos ), - "CHILD": new RegExp( "^:(only|first|last|nth|nth-last)-(child|of-type)(?:\\(" + whitespace + - "*(even|odd|(([+-]|)(\\d*)n|)" + whitespace + "*(?:([+-]|)" + whitespace + - "*(\\d+)|))" + whitespace + "*\\)|)", "i" ), - "bool": new RegExp( "^(?:" + booleans + ")$", "i" ), - // For use in libraries implementing .is() - // We use this for POS matching in `select` - "needsContext": new RegExp( "^" + whitespace + "*[>+~]|:(even|odd|eq|gt|lt|nth|first|last)(?:\\(" + - whitespace + "*((?:-\\d)?\\d*)" + whitespace + "*\\)|)(?=[^-]|$)", "i" ) - }, - - rinputs = /^(?:input|select|textarea|button)$/i, - rheader = /^h\d$/i, - - rnative = /^[^{]+\{\s*\[native \w/, - - // Easily-parseable/retrievable ID or TAG or CLASS selectors - rquickExpr = /^(?:#([\w-]+)|(\w+)|\.([\w-]+))$/, - - rsibling = /[+~]/, - - // CSS escapes - // http://www.w3.org/TR/CSS21/syndata.html#escaped-characters - runescape = new RegExp( "\\\\([\\da-f]{1,6}" + whitespace + "?|(" + whitespace + ")|.)", "ig" ), - funescape = function( _, escaped, escapedWhitespace ) { - var high = "0x" + escaped - 0x10000; - // NaN means non-codepoint - // Support: Firefox<24 - // Workaround erroneous numeric interpretation of +"0x" - return high !== high || escapedWhitespace ? - escaped : - high < 0 ? - // BMP codepoint - String.fromCharCode( high + 0x10000 ) : - // Supplemental Plane codepoint (surrogate pair) - String.fromCharCode( high >> 10 | 0xD800, high & 0x3FF | 0xDC00 ); - }, - - // CSS string/identifier serialization - // https://drafts.csswg.org/cssom/#common-serializing-idioms - rcssescape = /([\0-\x1f\x7f]|^-?\d)|^-$|[^\0-\x1f\x7f-\uFFFF\w-]/g, - fcssescape = function( ch, asCodePoint ) { - if ( asCodePoint ) { - - // U+0000 NULL becomes U+FFFD REPLACEMENT CHARACTER - if ( ch === "\0" ) { - return "\uFFFD"; - } - - // Control characters and (dependent upon position) numbers get escaped as code points - return ch.slice( 0, -1 ) + "\\" + ch.charCodeAt( ch.length - 1 ).toString( 16 ) + " "; - } - - // Other potentially-special ASCII characters get backslash-escaped - return "\\" + ch; - }, - - // Used for iframes - // See setDocument() - // Removing the function wrapper causes a "Permission Denied" - // error in IE - unloadHandler = function() { - setDocument(); - }, - - disabledAncestor = addCombinator( - function( elem ) { - return elem.disabled === true && ("form" in elem || "label" in elem); - }, - { dir: "parentNode", next: "legend" } - ); - -// Optimize for push.apply( _, NodeList ) -try { - push.apply( - (arr = slice.call( preferredDoc.childNodes )), - preferredDoc.childNodes - ); - // Support: Android<4.0 - // Detect silently failing push.apply - arr[ preferredDoc.childNodes.length ].nodeType; -} catch ( e ) { - push = { apply: arr.length ? - - // Leverage slice if possible - function( target, els ) { - push_native.apply( target, slice.call(els) ); - } : - - // Support: IE<9 - // Otherwise append directly - function( target, els ) { - var j = target.length, - i = 0; - // Can't trust NodeList.length - while ( (target[j++] = els[i++]) ) {} - target.length = j - 1; - } - }; -} - -function Sizzle( selector, context, results, seed ) { - var m, i, elem, nid, match, groups, newSelector, - newContext = context && context.ownerDocument, - - // nodeType defaults to 9, since context defaults to document - nodeType = context ? context.nodeType : 9; - - results = results || []; - - // Return early from calls with invalid selector or context - if ( typeof selector !== "string" || !selector || - nodeType !== 1 && nodeType !== 9 && nodeType !== 11 ) { - - return results; - } - - // Try to shortcut find operations (as opposed to filters) in HTML documents - if ( !seed ) { - - if ( ( context ? context.ownerDocument || context : preferredDoc ) !== document ) { - setDocument( context ); - } - context = context || document; - - if ( documentIsHTML ) { - - // If the selector is sufficiently simple, try using a "get*By*" DOM method - // (excepting DocumentFragment context, where the methods don't exist) - if ( nodeType !== 11 && (match = rquickExpr.exec( selector )) ) { - - // ID selector - if ( (m = match[1]) ) { - - // Document context - if ( nodeType === 9 ) { - if ( (elem = context.getElementById( m )) ) { - - // Support: IE, Opera, Webkit - // TODO: identify versions - // getElementById can match elements by name instead of ID - if ( elem.id === m ) { - results.push( elem ); - return results; - } - } else { - return results; - } - - // Element context - } else { - - // Support: IE, Opera, Webkit - // TODO: identify versions - // getElementById can match elements by name instead of ID - if ( newContext && (elem = newContext.getElementById( m )) && - contains( context, elem ) && - elem.id === m ) { - - results.push( elem ); - return results; - } - } - - // Type selector - } else if ( match[2] ) { - push.apply( results, context.getElementsByTagName( selector ) ); - return results; - - // Class selector - } else if ( (m = match[3]) && support.getElementsByClassName && - context.getElementsByClassName ) { - - push.apply( results, context.getElementsByClassName( m ) ); - return results; - } - } - - // Take advantage of querySelectorAll - if ( support.qsa && - !compilerCache[ selector + " " ] && - (!rbuggyQSA || !rbuggyQSA.test( selector )) ) { - - if ( nodeType !== 1 ) { - newContext = context; - newSelector = selector; - - // qSA looks outside Element context, which is not what we want - // Thanks to Andrew Dupont for this workaround technique - // Support: IE <=8 - // Exclude object elements - } else if ( context.nodeName.toLowerCase() !== "object" ) { - - // Capture the context ID, setting it first if necessary - if ( (nid = context.getAttribute( "id" )) ) { - nid = nid.replace( rcssescape, fcssescape ); - } else { - context.setAttribute( "id", (nid = expando) ); - } - - // Prefix every selector in the list - groups = tokenize( selector ); - i = groups.length; - while ( i-- ) { - groups[i] = "#" + nid + " " + toSelector( groups[i] ); - } - newSelector = groups.join( "," ); - - // Expand context for sibling selectors - newContext = rsibling.test( selector ) && testContext( context.parentNode ) || - context; - } - - if ( newSelector ) { - try { - push.apply( results, - newContext.querySelectorAll( newSelector ) - ); - return results; - } catch ( qsaError ) { - } finally { - if ( nid === expando ) { - context.removeAttribute( "id" ); - } - } - } - } - } - } - - // All others - return select( selector.replace( rtrim, "$1" ), context, results, seed ); -} - -/** - * Create key-value caches of limited size - * @returns {function(string, object)} Returns the Object data after storing it on itself with - * property name the (space-suffixed) string and (if the cache is larger than Expr.cacheLength) - * deleting the oldest entry - */ -function createCache() { - var keys = []; - - function cache( key, value ) { - // Use (key + " ") to avoid collision with native prototype properties (see Issue #157) - if ( keys.push( key + " " ) > Expr.cacheLength ) { - // Only keep the most recent entries - delete cache[ keys.shift() ]; - } - return (cache[ key + " " ] = value); - } - return cache; -} - -/** - * Mark a function for special use by Sizzle - * @param {Function} fn The function to mark - */ -function markFunction( fn ) { - fn[ expando ] = true; - return fn; -} - -/** - * Support testing using an element - * @param {Function} fn Passed the created element and returns a boolean result - */ -function assert( fn ) { - var el = document.createElement("fieldset"); - - try { - return !!fn( el ); - } catch (e) { - return false; - } finally { - // Remove from its parent by default - if ( el.parentNode ) { - el.parentNode.removeChild( el ); - } - // release memory in IE - el = null; - } -} - -/** - * Adds the same handler for all of the specified attrs - * @param {String} attrs Pipe-separated list of attributes - * @param {Function} handler The method that will be applied - */ -function addHandle( attrs, handler ) { - var arr = attrs.split("|"), - i = arr.length; - - while ( i-- ) { - Expr.attrHandle[ arr[i] ] = handler; - } -} - -/** - * Checks document order of two siblings - * @param {Element} a - * @param {Element} b - * @returns {Number} Returns less than 0 if a precedes b, greater than 0 if a follows b - */ -function siblingCheck( a, b ) { - var cur = b && a, - diff = cur && a.nodeType === 1 && b.nodeType === 1 && - a.sourceIndex - b.sourceIndex; - - // Use IE sourceIndex if available on both nodes - if ( diff ) { - return diff; - } - - // Check if b follows a - if ( cur ) { - while ( (cur = cur.nextSibling) ) { - if ( cur === b ) { - return -1; - } - } - } - - return a ? 1 : -1; -} - -/** - * Returns a function to use in pseudos for input types - * @param {String} type - */ -function createInputPseudo( type ) { - return function( elem ) { - var name = elem.nodeName.toLowerCase(); - return name === "input" && elem.type === type; - }; -} - -/** - * Returns a function to use in pseudos for buttons - * @param {String} type - */ -function createButtonPseudo( type ) { - return function( elem ) { - var name = elem.nodeName.toLowerCase(); - return (name === "input" || name === "button") && elem.type === type; - }; -} - -/** - * Returns a function to use in pseudos for :enabled/:disabled - * @param {Boolean} disabled true for :disabled; false for :enabled - */ -function createDisabledPseudo( disabled ) { - - // Known :disabled false positives: fieldset[disabled] > legend:nth-of-type(n+2) :can-disable - return function( elem ) { - - // Only certain elements can match :enabled or :disabled - // https://html.spec.whatwg.org/multipage/scripting.html#selector-enabled - // https://html.spec.whatwg.org/multipage/scripting.html#selector-disabled - if ( "form" in elem ) { - - // Check for inherited disabledness on relevant non-disabled elements: - // * listed form-associated elements in a disabled fieldset - // https://html.spec.whatwg.org/multipage/forms.html#category-listed - // https://html.spec.whatwg.org/multipage/forms.html#concept-fe-disabled - // * option elements in a disabled optgroup - // https://html.spec.whatwg.org/multipage/forms.html#concept-option-disabled - // All such elements have a "form" property. - if ( elem.parentNode && elem.disabled === false ) { - - // Option elements defer to a parent optgroup if present - if ( "label" in elem ) { - if ( "label" in elem.parentNode ) { - return elem.parentNode.disabled === disabled; - } else { - return elem.disabled === disabled; - } - } - - // Support: IE 6 - 11 - // Use the isDisabled shortcut property to check for disabled fieldset ancestors - return elem.isDisabled === disabled || - - // Where there is no isDisabled, check manually - /* jshint -W018 */ - elem.isDisabled !== !disabled && - disabledAncestor( elem ) === disabled; - } - - return elem.disabled === disabled; - - // Try to winnow out elements that can't be disabled before trusting the disabled property. - // Some victims get caught in our net (label, legend, menu, track), but it shouldn't - // even exist on them, let alone have a boolean value. - } else if ( "label" in elem ) { - return elem.disabled === disabled; - } - - // Remaining elements are neither :enabled nor :disabled - return false; - }; -} - -/** - * Returns a function to use in pseudos for positionals - * @param {Function} fn - */ -function createPositionalPseudo( fn ) { - return markFunction(function( argument ) { - argument = +argument; - return markFunction(function( seed, matches ) { - var j, - matchIndexes = fn( [], seed.length, argument ), - i = matchIndexes.length; - - // Match elements found at the specified indexes - while ( i-- ) { - if ( seed[ (j = matchIndexes[i]) ] ) { - seed[j] = !(matches[j] = seed[j]); - } - } - }); - }); -} - -/** - * Checks a node for validity as a Sizzle context - * @param {Element|Object=} context - * @returns {Element|Object|Boolean} The input node if acceptable, otherwise a falsy value - */ -function testContext( context ) { - return context && typeof context.getElementsByTagName !== "undefined" && context; -} - -// Expose support vars for convenience -support = Sizzle.support = {}; - -/** - * Detects XML nodes - * @param {Element|Object} elem An element or a document - * @returns {Boolean} True iff elem is a non-HTML XML node - */ -isXML = Sizzle.isXML = function( elem ) { - // documentElement is verified for cases where it doesn't yet exist - // (such as loading iframes in IE - #4833) - var documentElement = elem && (elem.ownerDocument || elem).documentElement; - return documentElement ? documentElement.nodeName !== "HTML" : false; -}; - -/** - * Sets document-related variables once based on the current document - * @param {Element|Object} [doc] An element or document object to use to set the document - * @returns {Object} Returns the current document - */ -setDocument = Sizzle.setDocument = function( node ) { - var hasCompare, subWindow, - doc = node ? node.ownerDocument || node : preferredDoc; - - // Return early if doc is invalid or already selected - if ( doc === document || doc.nodeType !== 9 || !doc.documentElement ) { - return document; - } - - // Update global variables - document = doc; - docElem = document.documentElement; - documentIsHTML = !isXML( document ); - - // Support: IE 9-11, Edge - // Accessing iframe documents after unload throws "permission denied" errors (jQuery #13936) - if ( preferredDoc !== document && - (subWindow = document.defaultView) && subWindow.top !== subWindow ) { - - // Support: IE 11, Edge - if ( subWindow.addEventListener ) { - subWindow.addEventListener( "unload", unloadHandler, false ); - - // Support: IE 9 - 10 only - } else if ( subWindow.attachEvent ) { - subWindow.attachEvent( "onunload", unloadHandler ); - } - } - - /* Attributes - ---------------------------------------------------------------------- */ - - // Support: IE<8 - // Verify that getAttribute really returns attributes and not properties - // (excepting IE8 booleans) - support.attributes = assert(function( el ) { - el.className = "i"; - return !el.getAttribute("className"); - }); - - /* getElement(s)By* - ---------------------------------------------------------------------- */ - - // Check if getElementsByTagName("*") returns only elements - support.getElementsByTagName = assert(function( el ) { - el.appendChild( document.createComment("") ); - return !el.getElementsByTagName("*").length; - }); - - // Support: IE<9 - support.getElementsByClassName = rnative.test( document.getElementsByClassName ); - - // Support: IE<10 - // Check if getElementById returns elements by name - // The broken getElementById methods don't pick up programmatically-set names, - // so use a roundabout getElementsByName test - support.getById = assert(function( el ) { - docElem.appendChild( el ).id = expando; - return !document.getElementsByName || !document.getElementsByName( expando ).length; - }); - - // ID filter and find - if ( support.getById ) { - Expr.filter["ID"] = function( id ) { - var attrId = id.replace( runescape, funescape ); - return function( elem ) { - return elem.getAttribute("id") === attrId; - }; - }; - Expr.find["ID"] = function( id, context ) { - if ( typeof context.getElementById !== "undefined" && documentIsHTML ) { - var elem = context.getElementById( id ); - return elem ? [ elem ] : []; - } - }; - } else { - Expr.filter["ID"] = function( id ) { - var attrId = id.replace( runescape, funescape ); - return function( elem ) { - var node = typeof elem.getAttributeNode !== "undefined" && - elem.getAttributeNode("id"); - return node && node.value === attrId; - }; - }; - - // Support: IE 6 - 7 only - // getElementById is not reliable as a find shortcut - Expr.find["ID"] = function( id, context ) { - if ( typeof context.getElementById !== "undefined" && documentIsHTML ) { - var node, i, elems, - elem = context.getElementById( id ); - - if ( elem ) { - - // Verify the id attribute - node = elem.getAttributeNode("id"); - if ( node && node.value === id ) { - return [ elem ]; - } - - // Fall back on getElementsByName - elems = context.getElementsByName( id ); - i = 0; - while ( (elem = elems[i++]) ) { - node = elem.getAttributeNode("id"); - if ( node && node.value === id ) { - return [ elem ]; - } - } - } - - return []; - } - }; - } - - // Tag - Expr.find["TAG"] = support.getElementsByTagName ? - function( tag, context ) { - if ( typeof context.getElementsByTagName !== "undefined" ) { - return context.getElementsByTagName( tag ); - - // DocumentFragment nodes don't have gEBTN - } else if ( support.qsa ) { - return context.querySelectorAll( tag ); - } - } : - - function( tag, context ) { - var elem, - tmp = [], - i = 0, - // By happy coincidence, a (broken) gEBTN appears on DocumentFragment nodes too - results = context.getElementsByTagName( tag ); - - // Filter out possible comments - if ( tag === "*" ) { - while ( (elem = results[i++]) ) { - if ( elem.nodeType === 1 ) { - tmp.push( elem ); - } - } - - return tmp; - } - return results; - }; - - // Class - Expr.find["CLASS"] = support.getElementsByClassName && function( className, context ) { - if ( typeof context.getElementsByClassName !== "undefined" && documentIsHTML ) { - return context.getElementsByClassName( className ); - } - }; - - /* QSA/matchesSelector - ---------------------------------------------------------------------- */ - - // QSA and matchesSelector support - - // matchesSelector(:active) reports false when true (IE9/Opera 11.5) - rbuggyMatches = []; - - // qSa(:focus) reports false when true (Chrome 21) - // We allow this because of a bug in IE8/9 that throws an error - // whenever `document.activeElement` is accessed on an iframe - // So, we allow :focus to pass through QSA all the time to avoid the IE error - // See https://bugs.jquery.com/ticket/13378 - rbuggyQSA = []; - - if ( (support.qsa = rnative.test( document.querySelectorAll )) ) { - // Build QSA regex - // Regex strategy adopted from Diego Perini - assert(function( el ) { - // Select is set to empty string on purpose - // This is to test IE's treatment of not explicitly - // setting a boolean content attribute, - // since its presence should be enough - // https://bugs.jquery.com/ticket/12359 - docElem.appendChild( el ).innerHTML = "" + - ""; - - // Support: IE8, Opera 11-12.16 - // Nothing should be selected when empty strings follow ^= or $= or *= - // The test attribute must be unknown in Opera but "safe" for WinRT - // https://msdn.microsoft.com/en-us/library/ie/hh465388.aspx#attribute_section - if ( el.querySelectorAll("[msallowcapture^='']").length ) { - rbuggyQSA.push( "[*^$]=" + whitespace + "*(?:''|\"\")" ); - } - - // Support: IE8 - // Boolean attributes and "value" are not treated correctly - if ( !el.querySelectorAll("[selected]").length ) { - rbuggyQSA.push( "\\[" + whitespace + "*(?:value|" + booleans + ")" ); - } - - // Support: Chrome<29, Android<4.4, Safari<7.0+, iOS<7.0+, PhantomJS<1.9.8+ - if ( !el.querySelectorAll( "[id~=" + expando + "-]" ).length ) { - rbuggyQSA.push("~="); - } - - // Webkit/Opera - :checked should return selected option elements - // http://www.w3.org/TR/2011/REC-css3-selectors-20110929/#checked - // IE8 throws error here and will not see later tests - if ( !el.querySelectorAll(":checked").length ) { - rbuggyQSA.push(":checked"); - } - - // Support: Safari 8+, iOS 8+ - // https://bugs.webkit.org/show_bug.cgi?id=136851 - // In-page `selector#id sibling-combinator selector` fails - if ( !el.querySelectorAll( "a#" + expando + "+*" ).length ) { - rbuggyQSA.push(".#.+[+~]"); - } - }); - - assert(function( el ) { - el.innerHTML = "" + - ""; - - // Support: Windows 8 Native Apps - // The type and name attributes are restricted during .innerHTML assignment - var input = document.createElement("input"); - input.setAttribute( "type", "hidden" ); - el.appendChild( input ).setAttribute( "name", "D" ); - - // Support: IE8 - // Enforce case-sensitivity of name attribute - if ( el.querySelectorAll("[name=d]").length ) { - rbuggyQSA.push( "name" + whitespace + "*[*^$|!~]?=" ); - } - - // FF 3.5 - :enabled/:disabled and hidden elements (hidden elements are still enabled) - // IE8 throws error here and will not see later tests - if ( el.querySelectorAll(":enabled").length !== 2 ) { - rbuggyQSA.push( ":enabled", ":disabled" ); - } - - // Support: IE9-11+ - // IE's :disabled selector does not pick up the children of disabled fieldsets - docElem.appendChild( el ).disabled = true; - if ( el.querySelectorAll(":disabled").length !== 2 ) { - rbuggyQSA.push( ":enabled", ":disabled" ); - } - - // Opera 10-11 does not throw on post-comma invalid pseudos - el.querySelectorAll("*,:x"); - rbuggyQSA.push(",.*:"); - }); - } - - if ( (support.matchesSelector = rnative.test( (matches = docElem.matches || - docElem.webkitMatchesSelector || - docElem.mozMatchesSelector || - docElem.oMatchesSelector || - docElem.msMatchesSelector) )) ) { - - assert(function( el ) { - // Check to see if it's possible to do matchesSelector - // on a disconnected node (IE 9) - support.disconnectedMatch = matches.call( el, "*" ); - - // This should fail with an exception - // Gecko does not error, returns false instead - matches.call( el, "[s!='']:x" ); - rbuggyMatches.push( "!=", pseudos ); - }); - } - - rbuggyQSA = rbuggyQSA.length && new RegExp( rbuggyQSA.join("|") ); - rbuggyMatches = rbuggyMatches.length && new RegExp( rbuggyMatches.join("|") ); - - /* Contains - ---------------------------------------------------------------------- */ - hasCompare = rnative.test( docElem.compareDocumentPosition ); - - // Element contains another - // Purposefully self-exclusive - // As in, an element does not contain itself - contains = hasCompare || rnative.test( docElem.contains ) ? - function( a, b ) { - var adown = a.nodeType === 9 ? a.documentElement : a, - bup = b && b.parentNode; - return a === bup || !!( bup && bup.nodeType === 1 && ( - adown.contains ? - adown.contains( bup ) : - a.compareDocumentPosition && a.compareDocumentPosition( bup ) & 16 - )); - } : - function( a, b ) { - if ( b ) { - while ( (b = b.parentNode) ) { - if ( b === a ) { - return true; - } - } - } - return false; - }; - - /* Sorting - ---------------------------------------------------------------------- */ - - // Document order sorting - sortOrder = hasCompare ? - function( a, b ) { - - // Flag for duplicate removal - if ( a === b ) { - hasDuplicate = true; - return 0; - } - - // Sort on method existence if only one input has compareDocumentPosition - var compare = !a.compareDocumentPosition - !b.compareDocumentPosition; - if ( compare ) { - return compare; - } - - // Calculate position if both inputs belong to the same document - compare = ( a.ownerDocument || a ) === ( b.ownerDocument || b ) ? - a.compareDocumentPosition( b ) : - - // Otherwise we know they are disconnected - 1; - - // Disconnected nodes - if ( compare & 1 || - (!support.sortDetached && b.compareDocumentPosition( a ) === compare) ) { - - // Choose the first element that is related to our preferred document - if ( a === document || a.ownerDocument === preferredDoc && contains(preferredDoc, a) ) { - return -1; - } - if ( b === document || b.ownerDocument === preferredDoc && contains(preferredDoc, b) ) { - return 1; - } - - // Maintain original order - return sortInput ? - ( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) : - 0; - } - - return compare & 4 ? -1 : 1; - } : - function( a, b ) { - // Exit early if the nodes are identical - if ( a === b ) { - hasDuplicate = true; - return 0; - } - - var cur, - i = 0, - aup = a.parentNode, - bup = b.parentNode, - ap = [ a ], - bp = [ b ]; - - // Parentless nodes are either documents or disconnected - if ( !aup || !bup ) { - return a === document ? -1 : - b === document ? 1 : - aup ? -1 : - bup ? 1 : - sortInput ? - ( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) : - 0; - - // If the nodes are siblings, we can do a quick check - } else if ( aup === bup ) { - return siblingCheck( a, b ); - } - - // Otherwise we need full lists of their ancestors for comparison - cur = a; - while ( (cur = cur.parentNode) ) { - ap.unshift( cur ); - } - cur = b; - while ( (cur = cur.parentNode) ) { - bp.unshift( cur ); - } - - // Walk down the tree looking for a discrepancy - while ( ap[i] === bp[i] ) { - i++; - } - - return i ? - // Do a sibling check if the nodes have a common ancestor - siblingCheck( ap[i], bp[i] ) : - - // Otherwise nodes in our document sort first - ap[i] === preferredDoc ? -1 : - bp[i] === preferredDoc ? 1 : - 0; - }; - - return document; -}; - -Sizzle.matches = function( expr, elements ) { - return Sizzle( expr, null, null, elements ); -}; - -Sizzle.matchesSelector = function( elem, expr ) { - // Set document vars if needed - if ( ( elem.ownerDocument || elem ) !== document ) { - setDocument( elem ); - } - - // Make sure that attribute selectors are quoted - expr = expr.replace( rattributeQuotes, "='$1']" ); - - if ( support.matchesSelector && documentIsHTML && - !compilerCache[ expr + " " ] && - ( !rbuggyMatches || !rbuggyMatches.test( expr ) ) && - ( !rbuggyQSA || !rbuggyQSA.test( expr ) ) ) { - - try { - var ret = matches.call( elem, expr ); - - // IE 9's matchesSelector returns false on disconnected nodes - if ( ret || support.disconnectedMatch || - // As well, disconnected nodes are said to be in a document - // fragment in IE 9 - elem.document && elem.document.nodeType !== 11 ) { - return ret; - } - } catch (e) {} - } - - return Sizzle( expr, document, null, [ elem ] ).length > 0; -}; - -Sizzle.contains = function( context, elem ) { - // Set document vars if needed - if ( ( context.ownerDocument || context ) !== document ) { - setDocument( context ); - } - return contains( context, elem ); -}; - -Sizzle.attr = function( elem, name ) { - // Set document vars if needed - if ( ( elem.ownerDocument || elem ) !== document ) { - setDocument( elem ); - } - - var fn = Expr.attrHandle[ name.toLowerCase() ], - // Don't get fooled by Object.prototype properties (jQuery #13807) - val = fn && hasOwn.call( Expr.attrHandle, name.toLowerCase() ) ? - fn( elem, name, !documentIsHTML ) : - undefined; - - return val !== undefined ? - val : - support.attributes || !documentIsHTML ? - elem.getAttribute( name ) : - (val = elem.getAttributeNode(name)) && val.specified ? - val.value : - null; -}; - -Sizzle.escape = function( sel ) { - return (sel + "").replace( rcssescape, fcssescape ); -}; - -Sizzle.error = function( msg ) { - throw new Error( "Syntax error, unrecognized expression: " + msg ); -}; - -/** - * Document sorting and removing duplicates - * @param {ArrayLike} results - */ -Sizzle.uniqueSort = function( results ) { - var elem, - duplicates = [], - j = 0, - i = 0; - - // Unless we *know* we can detect duplicates, assume their presence - hasDuplicate = !support.detectDuplicates; - sortInput = !support.sortStable && results.slice( 0 ); - results.sort( sortOrder ); - - if ( hasDuplicate ) { - while ( (elem = results[i++]) ) { - if ( elem === results[ i ] ) { - j = duplicates.push( i ); - } - } - while ( j-- ) { - results.splice( duplicates[ j ], 1 ); - } - } - - // Clear input after sorting to release objects - // See https://github.com/jquery/sizzle/pull/225 - sortInput = null; - - return results; -}; - -/** - * Utility function for retrieving the text value of an array of DOM nodes - * @param {Array|Element} elem - */ -getText = Sizzle.getText = function( elem ) { - var node, - ret = "", - i = 0, - nodeType = elem.nodeType; - - if ( !nodeType ) { - // If no nodeType, this is expected to be an array - while ( (node = elem[i++]) ) { - // Do not traverse comment nodes - ret += getText( node ); - } - } else if ( nodeType === 1 || nodeType === 9 || nodeType === 11 ) { - // Use textContent for elements - // innerText usage removed for consistency of new lines (jQuery #11153) - if ( typeof elem.textContent === "string" ) { - return elem.textContent; - } else { - // Traverse its children - for ( elem = elem.firstChild; elem; elem = elem.nextSibling ) { - ret += getText( elem ); - } - } - } else if ( nodeType === 3 || nodeType === 4 ) { - return elem.nodeValue; - } - // Do not include comment or processing instruction nodes - - return ret; -}; - -Expr = Sizzle.selectors = { - - // Can be adjusted by the user - cacheLength: 50, - - createPseudo: markFunction, - - match: matchExpr, - - attrHandle: {}, - - find: {}, - - relative: { - ">": { dir: "parentNode", first: true }, - " ": { dir: "parentNode" }, - "+": { dir: "previousSibling", first: true }, - "~": { dir: "previousSibling" } - }, - - preFilter: { - "ATTR": function( match ) { - match[1] = match[1].replace( runescape, funescape ); - - // Move the given value to match[3] whether quoted or unquoted - match[3] = ( match[3] || match[4] || match[5] || "" ).replace( runescape, funescape ); - - if ( match[2] === "~=" ) { - match[3] = " " + match[3] + " "; - } - - return match.slice( 0, 4 ); - }, - - "CHILD": function( match ) { - /* matches from matchExpr["CHILD"] - 1 type (only|nth|...) - 2 what (child|of-type) - 3 argument (even|odd|\d*|\d*n([+-]\d+)?|...) - 4 xn-component of xn+y argument ([+-]?\d*n|) - 5 sign of xn-component - 6 x of xn-component - 7 sign of y-component - 8 y of y-component - */ - match[1] = match[1].toLowerCase(); - - if ( match[1].slice( 0, 3 ) === "nth" ) { - // nth-* requires argument - if ( !match[3] ) { - Sizzle.error( match[0] ); - } - - // numeric x and y parameters for Expr.filter.CHILD - // remember that false/true cast respectively to 0/1 - match[4] = +( match[4] ? match[5] + (match[6] || 1) : 2 * ( match[3] === "even" || match[3] === "odd" ) ); - match[5] = +( ( match[7] + match[8] ) || match[3] === "odd" ); - - // other types prohibit arguments - } else if ( match[3] ) { - Sizzle.error( match[0] ); - } - - return match; - }, - - "PSEUDO": function( match ) { - var excess, - unquoted = !match[6] && match[2]; - - if ( matchExpr["CHILD"].test( match[0] ) ) { - return null; - } - - // Accept quoted arguments as-is - if ( match[3] ) { - match[2] = match[4] || match[5] || ""; - - // Strip excess characters from unquoted arguments - } else if ( unquoted && rpseudo.test( unquoted ) && - // Get excess from tokenize (recursively) - (excess = tokenize( unquoted, true )) && - // advance to the next closing parenthesis - (excess = unquoted.indexOf( ")", unquoted.length - excess ) - unquoted.length) ) { - - // excess is a negative index - match[0] = match[0].slice( 0, excess ); - match[2] = unquoted.slice( 0, excess ); - } - - // Return only captures needed by the pseudo filter method (type and argument) - return match.slice( 0, 3 ); - } - }, - - filter: { - - "TAG": function( nodeNameSelector ) { - var nodeName = nodeNameSelector.replace( runescape, funescape ).toLowerCase(); - return nodeNameSelector === "*" ? - function() { return true; } : - function( elem ) { - return elem.nodeName && elem.nodeName.toLowerCase() === nodeName; - }; - }, - - "CLASS": function( className ) { - var pattern = classCache[ className + " " ]; - - return pattern || - (pattern = new RegExp( "(^|" + whitespace + ")" + className + "(" + whitespace + "|$)" )) && - classCache( className, function( elem ) { - return pattern.test( typeof elem.className === "string" && elem.className || typeof elem.getAttribute !== "undefined" && elem.getAttribute("class") || "" ); - }); - }, - - "ATTR": function( name, operator, check ) { - return function( elem ) { - var result = Sizzle.attr( elem, name ); - - if ( result == null ) { - return operator === "!="; - } - if ( !operator ) { - return true; - } - - result += ""; - - return operator === "=" ? result === check : - operator === "!=" ? result !== check : - operator === "^=" ? check && result.indexOf( check ) === 0 : - operator === "*=" ? check && result.indexOf( check ) > -1 : - operator === "$=" ? check && result.slice( -check.length ) === check : - operator === "~=" ? ( " " + result.replace( rwhitespace, " " ) + " " ).indexOf( check ) > -1 : - operator === "|=" ? result === check || result.slice( 0, check.length + 1 ) === check + "-" : - false; - }; - }, - - "CHILD": function( type, what, argument, first, last ) { - var simple = type.slice( 0, 3 ) !== "nth", - forward = type.slice( -4 ) !== "last", - ofType = what === "of-type"; - - return first === 1 && last === 0 ? - - // Shortcut for :nth-*(n) - function( elem ) { - return !!elem.parentNode; - } : - - function( elem, context, xml ) { - var cache, uniqueCache, outerCache, node, nodeIndex, start, - dir = simple !== forward ? "nextSibling" : "previousSibling", - parent = elem.parentNode, - name = ofType && elem.nodeName.toLowerCase(), - useCache = !xml && !ofType, - diff = false; - - if ( parent ) { - - // :(first|last|only)-(child|of-type) - if ( simple ) { - while ( dir ) { - node = elem; - while ( (node = node[ dir ]) ) { - if ( ofType ? - node.nodeName.toLowerCase() === name : - node.nodeType === 1 ) { - - return false; - } - } - // Reverse direction for :only-* (if we haven't yet done so) - start = dir = type === "only" && !start && "nextSibling"; - } - return true; - } - - start = [ forward ? parent.firstChild : parent.lastChild ]; - - // non-xml :nth-child(...) stores cache data on `parent` - if ( forward && useCache ) { - - // Seek `elem` from a previously-cached index - - // ...in a gzip-friendly way - node = parent; - outerCache = node[ expando ] || (node[ expando ] = {}); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ node.uniqueID ] || - (outerCache[ node.uniqueID ] = {}); - - cache = uniqueCache[ type ] || []; - nodeIndex = cache[ 0 ] === dirruns && cache[ 1 ]; - diff = nodeIndex && cache[ 2 ]; - node = nodeIndex && parent.childNodes[ nodeIndex ]; - - while ( (node = ++nodeIndex && node && node[ dir ] || - - // Fallback to seeking `elem` from the start - (diff = nodeIndex = 0) || start.pop()) ) { - - // When found, cache indexes on `parent` and break - if ( node.nodeType === 1 && ++diff && node === elem ) { - uniqueCache[ type ] = [ dirruns, nodeIndex, diff ]; - break; - } - } - - } else { - // Use previously-cached element index if available - if ( useCache ) { - // ...in a gzip-friendly way - node = elem; - outerCache = node[ expando ] || (node[ expando ] = {}); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ node.uniqueID ] || - (outerCache[ node.uniqueID ] = {}); - - cache = uniqueCache[ type ] || []; - nodeIndex = cache[ 0 ] === dirruns && cache[ 1 ]; - diff = nodeIndex; - } - - // xml :nth-child(...) - // or :nth-last-child(...) or :nth(-last)?-of-type(...) - if ( diff === false ) { - // Use the same loop as above to seek `elem` from the start - while ( (node = ++nodeIndex && node && node[ dir ] || - (diff = nodeIndex = 0) || start.pop()) ) { - - if ( ( ofType ? - node.nodeName.toLowerCase() === name : - node.nodeType === 1 ) && - ++diff ) { - - // Cache the index of each encountered element - if ( useCache ) { - outerCache = node[ expando ] || (node[ expando ] = {}); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ node.uniqueID ] || - (outerCache[ node.uniqueID ] = {}); - - uniqueCache[ type ] = [ dirruns, diff ]; - } - - if ( node === elem ) { - break; - } - } - } - } - } - - // Incorporate the offset, then check against cycle size - diff -= last; - return diff === first || ( diff % first === 0 && diff / first >= 0 ); - } - }; - }, - - "PSEUDO": function( pseudo, argument ) { - // pseudo-class names are case-insensitive - // http://www.w3.org/TR/selectors/#pseudo-classes - // Prioritize by case sensitivity in case custom pseudos are added with uppercase letters - // Remember that setFilters inherits from pseudos - var args, - fn = Expr.pseudos[ pseudo ] || Expr.setFilters[ pseudo.toLowerCase() ] || - Sizzle.error( "unsupported pseudo: " + pseudo ); - - // The user may use createPseudo to indicate that - // arguments are needed to create the filter function - // just as Sizzle does - if ( fn[ expando ] ) { - return fn( argument ); - } - - // But maintain support for old signatures - if ( fn.length > 1 ) { - args = [ pseudo, pseudo, "", argument ]; - return Expr.setFilters.hasOwnProperty( pseudo.toLowerCase() ) ? - markFunction(function( seed, matches ) { - var idx, - matched = fn( seed, argument ), - i = matched.length; - while ( i-- ) { - idx = indexOf( seed, matched[i] ); - seed[ idx ] = !( matches[ idx ] = matched[i] ); - } - }) : - function( elem ) { - return fn( elem, 0, args ); - }; - } - - return fn; - } - }, - - pseudos: { - // Potentially complex pseudos - "not": markFunction(function( selector ) { - // Trim the selector passed to compile - // to avoid treating leading and trailing - // spaces as combinators - var input = [], - results = [], - matcher = compile( selector.replace( rtrim, "$1" ) ); - - return matcher[ expando ] ? - markFunction(function( seed, matches, context, xml ) { - var elem, - unmatched = matcher( seed, null, xml, [] ), - i = seed.length; - - // Match elements unmatched by `matcher` - while ( i-- ) { - if ( (elem = unmatched[i]) ) { - seed[i] = !(matches[i] = elem); - } - } - }) : - function( elem, context, xml ) { - input[0] = elem; - matcher( input, null, xml, results ); - // Don't keep the element (issue #299) - input[0] = null; - return !results.pop(); - }; - }), - - "has": markFunction(function( selector ) { - return function( elem ) { - return Sizzle( selector, elem ).length > 0; - }; - }), - - "contains": markFunction(function( text ) { - text = text.replace( runescape, funescape ); - return function( elem ) { - return ( elem.textContent || elem.innerText || getText( elem ) ).indexOf( text ) > -1; - }; - }), - - // "Whether an element is represented by a :lang() selector - // is based solely on the element's language value - // being equal to the identifier C, - // or beginning with the identifier C immediately followed by "-". - // The matching of C against the element's language value is performed case-insensitively. - // The identifier C does not have to be a valid language name." - // http://www.w3.org/TR/selectors/#lang-pseudo - "lang": markFunction( function( lang ) { - // lang value must be a valid identifier - if ( !ridentifier.test(lang || "") ) { - Sizzle.error( "unsupported lang: " + lang ); - } - lang = lang.replace( runescape, funescape ).toLowerCase(); - return function( elem ) { - var elemLang; - do { - if ( (elemLang = documentIsHTML ? - elem.lang : - elem.getAttribute("xml:lang") || elem.getAttribute("lang")) ) { - - elemLang = elemLang.toLowerCase(); - return elemLang === lang || elemLang.indexOf( lang + "-" ) === 0; - } - } while ( (elem = elem.parentNode) && elem.nodeType === 1 ); - return false; - }; - }), - - // Miscellaneous - "target": function( elem ) { - var hash = window.location && window.location.hash; - return hash && hash.slice( 1 ) === elem.id; - }, - - "root": function( elem ) { - return elem === docElem; - }, - - "focus": function( elem ) { - return elem === document.activeElement && (!document.hasFocus || document.hasFocus()) && !!(elem.type || elem.href || ~elem.tabIndex); - }, - - // Boolean properties - "enabled": createDisabledPseudo( false ), - "disabled": createDisabledPseudo( true ), - - "checked": function( elem ) { - // In CSS3, :checked should return both checked and selected elements - // http://www.w3.org/TR/2011/REC-css3-selectors-20110929/#checked - var nodeName = elem.nodeName.toLowerCase(); - return (nodeName === "input" && !!elem.checked) || (nodeName === "option" && !!elem.selected); - }, - - "selected": function( elem ) { - // Accessing this property makes selected-by-default - // options in Safari work properly - if ( elem.parentNode ) { - elem.parentNode.selectedIndex; - } - - return elem.selected === true; - }, - - // Contents - "empty": function( elem ) { - // http://www.w3.org/TR/selectors/#empty-pseudo - // :empty is negated by element (1) or content nodes (text: 3; cdata: 4; entity ref: 5), - // but not by others (comment: 8; processing instruction: 7; etc.) - // nodeType < 6 works because attributes (2) do not appear as children - for ( elem = elem.firstChild; elem; elem = elem.nextSibling ) { - if ( elem.nodeType < 6 ) { - return false; - } - } - return true; - }, - - "parent": function( elem ) { - return !Expr.pseudos["empty"]( elem ); - }, - - // Element/input types - "header": function( elem ) { - return rheader.test( elem.nodeName ); - }, - - "input": function( elem ) { - return rinputs.test( elem.nodeName ); - }, - - "button": function( elem ) { - var name = elem.nodeName.toLowerCase(); - return name === "input" && elem.type === "button" || name === "button"; - }, - - "text": function( elem ) { - var attr; - return elem.nodeName.toLowerCase() === "input" && - elem.type === "text" && - - // Support: IE<8 - // New HTML5 attribute values (e.g., "search") appear with elem.type === "text" - ( (attr = elem.getAttribute("type")) == null || attr.toLowerCase() === "text" ); - }, - - // Position-in-collection - "first": createPositionalPseudo(function() { - return [ 0 ]; - }), - - "last": createPositionalPseudo(function( matchIndexes, length ) { - return [ length - 1 ]; - }), - - "eq": createPositionalPseudo(function( matchIndexes, length, argument ) { - return [ argument < 0 ? argument + length : argument ]; - }), - - "even": createPositionalPseudo(function( matchIndexes, length ) { - var i = 0; - for ( ; i < length; i += 2 ) { - matchIndexes.push( i ); - } - return matchIndexes; - }), - - "odd": createPositionalPseudo(function( matchIndexes, length ) { - var i = 1; - for ( ; i < length; i += 2 ) { - matchIndexes.push( i ); - } - return matchIndexes; - }), - - "lt": createPositionalPseudo(function( matchIndexes, length, argument ) { - var i = argument < 0 ? argument + length : argument; - for ( ; --i >= 0; ) { - matchIndexes.push( i ); - } - return matchIndexes; - }), - - "gt": createPositionalPseudo(function( matchIndexes, length, argument ) { - var i = argument < 0 ? argument + length : argument; - for ( ; ++i < length; ) { - matchIndexes.push( i ); - } - return matchIndexes; - }) - } -}; - -Expr.pseudos["nth"] = Expr.pseudos["eq"]; - -// Add button/input type pseudos -for ( i in { radio: true, checkbox: true, file: true, password: true, image: true } ) { - Expr.pseudos[ i ] = createInputPseudo( i ); -} -for ( i in { submit: true, reset: true } ) { - Expr.pseudos[ i ] = createButtonPseudo( i ); -} - -// Easy API for creating new setFilters -function setFilters() {} -setFilters.prototype = Expr.filters = Expr.pseudos; -Expr.setFilters = new setFilters(); - -tokenize = Sizzle.tokenize = function( selector, parseOnly ) { - var matched, match, tokens, type, - soFar, groups, preFilters, - cached = tokenCache[ selector + " " ]; - - if ( cached ) { - return parseOnly ? 0 : cached.slice( 0 ); - } - - soFar = selector; - groups = []; - preFilters = Expr.preFilter; - - while ( soFar ) { - - // Comma and first run - if ( !matched || (match = rcomma.exec( soFar )) ) { - if ( match ) { - // Don't consume trailing commas as valid - soFar = soFar.slice( match[0].length ) || soFar; - } - groups.push( (tokens = []) ); - } - - matched = false; - - // Combinators - if ( (match = rcombinators.exec( soFar )) ) { - matched = match.shift(); - tokens.push({ - value: matched, - // Cast descendant combinators to space - type: match[0].replace( rtrim, " " ) - }); - soFar = soFar.slice( matched.length ); - } - - // Filters - for ( type in Expr.filter ) { - if ( (match = matchExpr[ type ].exec( soFar )) && (!preFilters[ type ] || - (match = preFilters[ type ]( match ))) ) { - matched = match.shift(); - tokens.push({ - value: matched, - type: type, - matches: match - }); - soFar = soFar.slice( matched.length ); - } - } - - if ( !matched ) { - break; - } - } - - // Return the length of the invalid excess - // if we're just parsing - // Otherwise, throw an error or return tokens - return parseOnly ? - soFar.length : - soFar ? - Sizzle.error( selector ) : - // Cache the tokens - tokenCache( selector, groups ).slice( 0 ); -}; - -function toSelector( tokens ) { - var i = 0, - len = tokens.length, - selector = ""; - for ( ; i < len; i++ ) { - selector += tokens[i].value; - } - return selector; -} - -function addCombinator( matcher, combinator, base ) { - var dir = combinator.dir, - skip = combinator.next, - key = skip || dir, - checkNonElements = base && key === "parentNode", - doneName = done++; - - return combinator.first ? - // Check against closest ancestor/preceding element - function( elem, context, xml ) { - while ( (elem = elem[ dir ]) ) { - if ( elem.nodeType === 1 || checkNonElements ) { - return matcher( elem, context, xml ); - } - } - return false; - } : - - // Check against all ancestor/preceding elements - function( elem, context, xml ) { - var oldCache, uniqueCache, outerCache, - newCache = [ dirruns, doneName ]; - - // We can't set arbitrary data on XML nodes, so they don't benefit from combinator caching - if ( xml ) { - while ( (elem = elem[ dir ]) ) { - if ( elem.nodeType === 1 || checkNonElements ) { - if ( matcher( elem, context, xml ) ) { - return true; - } - } - } - } else { - while ( (elem = elem[ dir ]) ) { - if ( elem.nodeType === 1 || checkNonElements ) { - outerCache = elem[ expando ] || (elem[ expando ] = {}); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ elem.uniqueID ] || (outerCache[ elem.uniqueID ] = {}); - - if ( skip && skip === elem.nodeName.toLowerCase() ) { - elem = elem[ dir ] || elem; - } else if ( (oldCache = uniqueCache[ key ]) && - oldCache[ 0 ] === dirruns && oldCache[ 1 ] === doneName ) { - - // Assign to newCache so results back-propagate to previous elements - return (newCache[ 2 ] = oldCache[ 2 ]); - } else { - // Reuse newcache so results back-propagate to previous elements - uniqueCache[ key ] = newCache; - - // A match means we're done; a fail means we have to keep checking - if ( (newCache[ 2 ] = matcher( elem, context, xml )) ) { - return true; - } - } - } - } - } - return false; - }; -} - -function elementMatcher( matchers ) { - return matchers.length > 1 ? - function( elem, context, xml ) { - var i = matchers.length; - while ( i-- ) { - if ( !matchers[i]( elem, context, xml ) ) { - return false; - } - } - return true; - } : - matchers[0]; -} - -function multipleContexts( selector, contexts, results ) { - var i = 0, - len = contexts.length; - for ( ; i < len; i++ ) { - Sizzle( selector, contexts[i], results ); - } - return results; -} - -function condense( unmatched, map, filter, context, xml ) { - var elem, - newUnmatched = [], - i = 0, - len = unmatched.length, - mapped = map != null; - - for ( ; i < len; i++ ) { - if ( (elem = unmatched[i]) ) { - if ( !filter || filter( elem, context, xml ) ) { - newUnmatched.push( elem ); - if ( mapped ) { - map.push( i ); - } - } - } - } - - return newUnmatched; -} - -function setMatcher( preFilter, selector, matcher, postFilter, postFinder, postSelector ) { - if ( postFilter && !postFilter[ expando ] ) { - postFilter = setMatcher( postFilter ); - } - if ( postFinder && !postFinder[ expando ] ) { - postFinder = setMatcher( postFinder, postSelector ); - } - return markFunction(function( seed, results, context, xml ) { - var temp, i, elem, - preMap = [], - postMap = [], - preexisting = results.length, - - // Get initial elements from seed or context - elems = seed || multipleContexts( selector || "*", context.nodeType ? [ context ] : context, [] ), - - // Prefilter to get matcher input, preserving a map for seed-results synchronization - matcherIn = preFilter && ( seed || !selector ) ? - condense( elems, preMap, preFilter, context, xml ) : - elems, - - matcherOut = matcher ? - // If we have a postFinder, or filtered seed, or non-seed postFilter or preexisting results, - postFinder || ( seed ? preFilter : preexisting || postFilter ) ? - - // ...intermediate processing is necessary - [] : - - // ...otherwise use results directly - results : - matcherIn; - - // Find primary matches - if ( matcher ) { - matcher( matcherIn, matcherOut, context, xml ); - } - - // Apply postFilter - if ( postFilter ) { - temp = condense( matcherOut, postMap ); - postFilter( temp, [], context, xml ); - - // Un-match failing elements by moving them back to matcherIn - i = temp.length; - while ( i-- ) { - if ( (elem = temp[i]) ) { - matcherOut[ postMap[i] ] = !(matcherIn[ postMap[i] ] = elem); - } - } - } - - if ( seed ) { - if ( postFinder || preFilter ) { - if ( postFinder ) { - // Get the final matcherOut by condensing this intermediate into postFinder contexts - temp = []; - i = matcherOut.length; - while ( i-- ) { - if ( (elem = matcherOut[i]) ) { - // Restore matcherIn since elem is not yet a final match - temp.push( (matcherIn[i] = elem) ); - } - } - postFinder( null, (matcherOut = []), temp, xml ); - } - - // Move matched elements from seed to results to keep them synchronized - i = matcherOut.length; - while ( i-- ) { - if ( (elem = matcherOut[i]) && - (temp = postFinder ? indexOf( seed, elem ) : preMap[i]) > -1 ) { - - seed[temp] = !(results[temp] = elem); - } - } - } - - // Add elements to results, through postFinder if defined - } else { - matcherOut = condense( - matcherOut === results ? - matcherOut.splice( preexisting, matcherOut.length ) : - matcherOut - ); - if ( postFinder ) { - postFinder( null, results, matcherOut, xml ); - } else { - push.apply( results, matcherOut ); - } - } - }); -} - -function matcherFromTokens( tokens ) { - var checkContext, matcher, j, - len = tokens.length, - leadingRelative = Expr.relative[ tokens[0].type ], - implicitRelative = leadingRelative || Expr.relative[" "], - i = leadingRelative ? 1 : 0, - - // The foundational matcher ensures that elements are reachable from top-level context(s) - matchContext = addCombinator( function( elem ) { - return elem === checkContext; - }, implicitRelative, true ), - matchAnyContext = addCombinator( function( elem ) { - return indexOf( checkContext, elem ) > -1; - }, implicitRelative, true ), - matchers = [ function( elem, context, xml ) { - var ret = ( !leadingRelative && ( xml || context !== outermostContext ) ) || ( - (checkContext = context).nodeType ? - matchContext( elem, context, xml ) : - matchAnyContext( elem, context, xml ) ); - // Avoid hanging onto element (issue #299) - checkContext = null; - return ret; - } ]; - - for ( ; i < len; i++ ) { - if ( (matcher = Expr.relative[ tokens[i].type ]) ) { - matchers = [ addCombinator(elementMatcher( matchers ), matcher) ]; - } else { - matcher = Expr.filter[ tokens[i].type ].apply( null, tokens[i].matches ); - - // Return special upon seeing a positional matcher - if ( matcher[ expando ] ) { - // Find the next relative operator (if any) for proper handling - j = ++i; - for ( ; j < len; j++ ) { - if ( Expr.relative[ tokens[j].type ] ) { - break; - } - } - return setMatcher( - i > 1 && elementMatcher( matchers ), - i > 1 && toSelector( - // If the preceding token was a descendant combinator, insert an implicit any-element `*` - tokens.slice( 0, i - 1 ).concat({ value: tokens[ i - 2 ].type === " " ? "*" : "" }) - ).replace( rtrim, "$1" ), - matcher, - i < j && matcherFromTokens( tokens.slice( i, j ) ), - j < len && matcherFromTokens( (tokens = tokens.slice( j )) ), - j < len && toSelector( tokens ) - ); - } - matchers.push( matcher ); - } - } - - return elementMatcher( matchers ); -} - -function matcherFromGroupMatchers( elementMatchers, setMatchers ) { - var bySet = setMatchers.length > 0, - byElement = elementMatchers.length > 0, - superMatcher = function( seed, context, xml, results, outermost ) { - var elem, j, matcher, - matchedCount = 0, - i = "0", - unmatched = seed && [], - setMatched = [], - contextBackup = outermostContext, - // We must always have either seed elements or outermost context - elems = seed || byElement && Expr.find["TAG"]( "*", outermost ), - // Use integer dirruns iff this is the outermost matcher - dirrunsUnique = (dirruns += contextBackup == null ? 1 : Math.random() || 0.1), - len = elems.length; - - if ( outermost ) { - outermostContext = context === document || context || outermost; - } - - // Add elements passing elementMatchers directly to results - // Support: IE<9, Safari - // Tolerate NodeList properties (IE: "length"; Safari: ) matching elements by id - for ( ; i !== len && (elem = elems[i]) != null; i++ ) { - if ( byElement && elem ) { - j = 0; - if ( !context && elem.ownerDocument !== document ) { - setDocument( elem ); - xml = !documentIsHTML; - } - while ( (matcher = elementMatchers[j++]) ) { - if ( matcher( elem, context || document, xml) ) { - results.push( elem ); - break; - } - } - if ( outermost ) { - dirruns = dirrunsUnique; - } - } - - // Track unmatched elements for set filters - if ( bySet ) { - // They will have gone through all possible matchers - if ( (elem = !matcher && elem) ) { - matchedCount--; - } - - // Lengthen the array for every element, matched or not - if ( seed ) { - unmatched.push( elem ); - } - } - } - - // `i` is now the count of elements visited above, and adding it to `matchedCount` - // makes the latter nonnegative. - matchedCount += i; - - // Apply set filters to unmatched elements - // NOTE: This can be skipped if there are no unmatched elements (i.e., `matchedCount` - // equals `i`), unless we didn't visit _any_ elements in the above loop because we have - // no element matchers and no seed. - // Incrementing an initially-string "0" `i` allows `i` to remain a string only in that - // case, which will result in a "00" `matchedCount` that differs from `i` but is also - // numerically zero. - if ( bySet && i !== matchedCount ) { - j = 0; - while ( (matcher = setMatchers[j++]) ) { - matcher( unmatched, setMatched, context, xml ); - } - - if ( seed ) { - // Reintegrate element matches to eliminate the need for sorting - if ( matchedCount > 0 ) { - while ( i-- ) { - if ( !(unmatched[i] || setMatched[i]) ) { - setMatched[i] = pop.call( results ); - } - } - } - - // Discard index placeholder values to get only actual matches - setMatched = condense( setMatched ); - } - - // Add matches to results - push.apply( results, setMatched ); - - // Seedless set matches succeeding multiple successful matchers stipulate sorting - if ( outermost && !seed && setMatched.length > 0 && - ( matchedCount + setMatchers.length ) > 1 ) { - - Sizzle.uniqueSort( results ); - } - } - - // Override manipulation of globals by nested matchers - if ( outermost ) { - dirruns = dirrunsUnique; - outermostContext = contextBackup; - } - - return unmatched; - }; - - return bySet ? - markFunction( superMatcher ) : - superMatcher; -} - -compile = Sizzle.compile = function( selector, match /* Internal Use Only */ ) { - var i, - setMatchers = [], - elementMatchers = [], - cached = compilerCache[ selector + " " ]; - - if ( !cached ) { - // Generate a function of recursive functions that can be used to check each element - if ( !match ) { - match = tokenize( selector ); - } - i = match.length; - while ( i-- ) { - cached = matcherFromTokens( match[i] ); - if ( cached[ expando ] ) { - setMatchers.push( cached ); - } else { - elementMatchers.push( cached ); - } - } - - // Cache the compiled function - cached = compilerCache( selector, matcherFromGroupMatchers( elementMatchers, setMatchers ) ); - - // Save selector and tokenization - cached.selector = selector; - } - return cached; -}; - -/** - * A low-level selection function that works with Sizzle's compiled - * selector functions - * @param {String|Function} selector A selector or a pre-compiled - * selector function built with Sizzle.compile - * @param {Element} context - * @param {Array} [results] - * @param {Array} [seed] A set of elements to match against - */ -select = Sizzle.select = function( selector, context, results, seed ) { - var i, tokens, token, type, find, - compiled = typeof selector === "function" && selector, - match = !seed && tokenize( (selector = compiled.selector || selector) ); - - results = results || []; - - // Try to minimize operations if there is only one selector in the list and no seed - // (the latter of which guarantees us context) - if ( match.length === 1 ) { - - // Reduce context if the leading compound selector is an ID - tokens = match[0] = match[0].slice( 0 ); - if ( tokens.length > 2 && (token = tokens[0]).type === "ID" && - context.nodeType === 9 && documentIsHTML && Expr.relative[ tokens[1].type ] ) { - - context = ( Expr.find["ID"]( token.matches[0].replace(runescape, funescape), context ) || [] )[0]; - if ( !context ) { - return results; - - // Precompiled matchers will still verify ancestry, so step up a level - } else if ( compiled ) { - context = context.parentNode; - } - - selector = selector.slice( tokens.shift().value.length ); - } - - // Fetch a seed set for right-to-left matching - i = matchExpr["needsContext"].test( selector ) ? 0 : tokens.length; - while ( i-- ) { - token = tokens[i]; - - // Abort if we hit a combinator - if ( Expr.relative[ (type = token.type) ] ) { - break; - } - if ( (find = Expr.find[ type ]) ) { - // Search, expanding context for leading sibling combinators - if ( (seed = find( - token.matches[0].replace( runescape, funescape ), - rsibling.test( tokens[0].type ) && testContext( context.parentNode ) || context - )) ) { - - // If seed is empty or no tokens remain, we can return early - tokens.splice( i, 1 ); - selector = seed.length && toSelector( tokens ); - if ( !selector ) { - push.apply( results, seed ); - return results; - } - - break; - } - } - } - } - - // Compile and execute a filtering function if one is not provided - // Provide `match` to avoid retokenization if we modified the selector above - ( compiled || compile( selector, match ) )( - seed, - context, - !documentIsHTML, - results, - !context || rsibling.test( selector ) && testContext( context.parentNode ) || context - ); - return results; -}; - -// One-time assignments - -// Sort stability -support.sortStable = expando.split("").sort( sortOrder ).join("") === expando; - -// Support: Chrome 14-35+ -// Always assume duplicates if they aren't passed to the comparison function -support.detectDuplicates = !!hasDuplicate; - -// Initialize against the default document -setDocument(); - -// Support: Webkit<537.32 - Safari 6.0.3/Chrome 25 (fixed in Chrome 27) -// Detached nodes confoundingly follow *each other* -support.sortDetached = assert(function( el ) { - // Should return 1, but returns 4 (following) - return el.compareDocumentPosition( document.createElement("fieldset") ) & 1; -}); - -// Support: IE<8 -// Prevent attribute/property "interpolation" -// https://msdn.microsoft.com/en-us/library/ms536429%28VS.85%29.aspx -if ( !assert(function( el ) { - el.innerHTML = ""; - return el.firstChild.getAttribute("href") === "#" ; -}) ) { - addHandle( "type|href|height|width", function( elem, name, isXML ) { - if ( !isXML ) { - return elem.getAttribute( name, name.toLowerCase() === "type" ? 1 : 2 ); - } - }); -} - -// Support: IE<9 -// Use defaultValue in place of getAttribute("value") -if ( !support.attributes || !assert(function( el ) { - el.innerHTML = ""; - el.firstChild.setAttribute( "value", "" ); - return el.firstChild.getAttribute( "value" ) === ""; -}) ) { - addHandle( "value", function( elem, name, isXML ) { - if ( !isXML && elem.nodeName.toLowerCase() === "input" ) { - return elem.defaultValue; - } - }); -} - -// Support: IE<9 -// Use getAttributeNode to fetch booleans when getAttribute lies -if ( !assert(function( el ) { - return el.getAttribute("disabled") == null; -}) ) { - addHandle( booleans, function( elem, name, isXML ) { - var val; - if ( !isXML ) { - return elem[ name ] === true ? name.toLowerCase() : - (val = elem.getAttributeNode( name )) && val.specified ? - val.value : - null; - } - }); -} - -return Sizzle; - -})( window ); - - - -jQuery.find = Sizzle; -jQuery.expr = Sizzle.selectors; - -// Deprecated -jQuery.expr[ ":" ] = jQuery.expr.pseudos; -jQuery.uniqueSort = jQuery.unique = Sizzle.uniqueSort; -jQuery.text = Sizzle.getText; -jQuery.isXMLDoc = Sizzle.isXML; -jQuery.contains = Sizzle.contains; -jQuery.escapeSelector = Sizzle.escape; - - - - -var dir = function( elem, dir, until ) { - var matched = [], - truncate = until !== undefined; - - while ( ( elem = elem[ dir ] ) && elem.nodeType !== 9 ) { - if ( elem.nodeType === 1 ) { - if ( truncate && jQuery( elem ).is( until ) ) { - break; - } - matched.push( elem ); - } - } - return matched; -}; - - -var siblings = function( n, elem ) { - var matched = []; - - for ( ; n; n = n.nextSibling ) { - if ( n.nodeType === 1 && n !== elem ) { - matched.push( n ); - } - } - - return matched; -}; - - -var rneedsContext = jQuery.expr.match.needsContext; - - - -function nodeName( elem, name ) { - - return elem.nodeName && elem.nodeName.toLowerCase() === name.toLowerCase(); - -}; -var rsingleTag = ( /^<([a-z][^\/\0>:\x20\t\r\n\f]*)[\x20\t\r\n\f]*\/?>(?:<\/\1>|)$/i ); - - - -var risSimple = /^.[^:#\[\.,]*$/; - -// Implement the identical functionality for filter and not -function winnow( elements, qualifier, not ) { - if ( jQuery.isFunction( qualifier ) ) { - return jQuery.grep( elements, function( elem, i ) { - return !!qualifier.call( elem, i, elem ) !== not; - } ); - } - - // Single element - if ( qualifier.nodeType ) { - return jQuery.grep( elements, function( elem ) { - return ( elem === qualifier ) !== not; - } ); - } - - // Arraylike of elements (jQuery, arguments, Array) - if ( typeof qualifier !== "string" ) { - return jQuery.grep( elements, function( elem ) { - return ( indexOf.call( qualifier, elem ) > -1 ) !== not; - } ); - } - - // Simple selector that can be filtered directly, removing non-Elements - if ( risSimple.test( qualifier ) ) { - return jQuery.filter( qualifier, elements, not ); - } - - // Complex selector, compare the two sets, removing non-Elements - qualifier = jQuery.filter( qualifier, elements ); - return jQuery.grep( elements, function( elem ) { - return ( indexOf.call( qualifier, elem ) > -1 ) !== not && elem.nodeType === 1; - } ); -} - -jQuery.filter = function( expr, elems, not ) { - var elem = elems[ 0 ]; - - if ( not ) { - expr = ":not(" + expr + ")"; - } - - if ( elems.length === 1 && elem.nodeType === 1 ) { - return jQuery.find.matchesSelector( elem, expr ) ? [ elem ] : []; - } - - return jQuery.find.matches( expr, jQuery.grep( elems, function( elem ) { - return elem.nodeType === 1; - } ) ); -}; - -jQuery.fn.extend( { - find: function( selector ) { - var i, ret, - len = this.length, - self = this; - - if ( typeof selector !== "string" ) { - return this.pushStack( jQuery( selector ).filter( function() { - for ( i = 0; i < len; i++ ) { - if ( jQuery.contains( self[ i ], this ) ) { - return true; - } - } - } ) ); - } - - ret = this.pushStack( [] ); - - for ( i = 0; i < len; i++ ) { - jQuery.find( selector, self[ i ], ret ); - } - - return len > 1 ? jQuery.uniqueSort( ret ) : ret; - }, - filter: function( selector ) { - return this.pushStack( winnow( this, selector || [], false ) ); - }, - not: function( selector ) { - return this.pushStack( winnow( this, selector || [], true ) ); - }, - is: function( selector ) { - return !!winnow( - this, - - // If this is a positional/relative selector, check membership in the returned set - // so $("p:first").is("p:last") won't return true for a doc with two "p". - typeof selector === "string" && rneedsContext.test( selector ) ? - jQuery( selector ) : - selector || [], - false - ).length; - } -} ); - - -// Initialize a jQuery object - - -// A central reference to the root jQuery(document) -var rootjQuery, - - // A simple way to check for HTML strings - // Prioritize #id over to avoid XSS via location.hash (#9521) - // Strict HTML recognition (#11290: must start with <) - // Shortcut simple #id case for speed - rquickExpr = /^(?:\s*(<[\w\W]+>)[^>]*|#([\w-]+))$/, - - init = jQuery.fn.init = function( selector, context, root ) { - var match, elem; - - // HANDLE: $(""), $(null), $(undefined), $(false) - if ( !selector ) { - return this; - } - - // Method init() accepts an alternate rootjQuery - // so migrate can support jQuery.sub (gh-2101) - root = root || rootjQuery; - - // Handle HTML strings - if ( typeof selector === "string" ) { - if ( selector[ 0 ] === "<" && - selector[ selector.length - 1 ] === ">" && - selector.length >= 3 ) { - - // Assume that strings that start and end with <> are HTML and skip the regex check - match = [ null, selector, null ]; - - } else { - match = rquickExpr.exec( selector ); - } - - // Match html or make sure no context is specified for #id - if ( match && ( match[ 1 ] || !context ) ) { - - // HANDLE: $(html) -> $(array) - if ( match[ 1 ] ) { - context = context instanceof jQuery ? context[ 0 ] : context; - - // Option to run scripts is true for back-compat - // Intentionally let the error be thrown if parseHTML is not present - jQuery.merge( this, jQuery.parseHTML( - match[ 1 ], - context && context.nodeType ? context.ownerDocument || context : document, - true - ) ); - - // HANDLE: $(html, props) - if ( rsingleTag.test( match[ 1 ] ) && jQuery.isPlainObject( context ) ) { - for ( match in context ) { - - // Properties of context are called as methods if possible - if ( jQuery.isFunction( this[ match ] ) ) { - this[ match ]( context[ match ] ); - - // ...and otherwise set as attributes - } else { - this.attr( match, context[ match ] ); - } - } - } - - return this; - - // HANDLE: $(#id) - } else { - elem = document.getElementById( match[ 2 ] ); - - if ( elem ) { - - // Inject the element directly into the jQuery object - this[ 0 ] = elem; - this.length = 1; - } - return this; - } - - // HANDLE: $(expr, $(...)) - } else if ( !context || context.jquery ) { - return ( context || root ).find( selector ); - - // HANDLE: $(expr, context) - // (which is just equivalent to: $(context).find(expr) - } else { - return this.constructor( context ).find( selector ); - } - - // HANDLE: $(DOMElement) - } else if ( selector.nodeType ) { - this[ 0 ] = selector; - this.length = 1; - return this; - - // HANDLE: $(function) - // Shortcut for document ready - } else if ( jQuery.isFunction( selector ) ) { - return root.ready !== undefined ? - root.ready( selector ) : - - // Execute immediately if ready is not present - selector( jQuery ); - } - - return jQuery.makeArray( selector, this ); - }; - -// Give the init function the jQuery prototype for later instantiation -init.prototype = jQuery.fn; - -// Initialize central reference -rootjQuery = jQuery( document ); - - -var rparentsprev = /^(?:parents|prev(?:Until|All))/, - - // Methods guaranteed to produce a unique set when starting from a unique set - guaranteedUnique = { - children: true, - contents: true, - next: true, - prev: true - }; - -jQuery.fn.extend( { - has: function( target ) { - var targets = jQuery( target, this ), - l = targets.length; - - return this.filter( function() { - var i = 0; - for ( ; i < l; i++ ) { - if ( jQuery.contains( this, targets[ i ] ) ) { - return true; - } - } - } ); - }, - - closest: function( selectors, context ) { - var cur, - i = 0, - l = this.length, - matched = [], - targets = typeof selectors !== "string" && jQuery( selectors ); - - // Positional selectors never match, since there's no _selection_ context - if ( !rneedsContext.test( selectors ) ) { - for ( ; i < l; i++ ) { - for ( cur = this[ i ]; cur && cur !== context; cur = cur.parentNode ) { - - // Always skip document fragments - if ( cur.nodeType < 11 && ( targets ? - targets.index( cur ) > -1 : - - // Don't pass non-elements to Sizzle - cur.nodeType === 1 && - jQuery.find.matchesSelector( cur, selectors ) ) ) { - - matched.push( cur ); - break; - } - } - } - } - - return this.pushStack( matched.length > 1 ? jQuery.uniqueSort( matched ) : matched ); - }, - - // Determine the position of an element within the set - index: function( elem ) { - - // No argument, return index in parent - if ( !elem ) { - return ( this[ 0 ] && this[ 0 ].parentNode ) ? this.first().prevAll().length : -1; - } - - // Index in selector - if ( typeof elem === "string" ) { - return indexOf.call( jQuery( elem ), this[ 0 ] ); - } - - // Locate the position of the desired element - return indexOf.call( this, - - // If it receives a jQuery object, the first element is used - elem.jquery ? elem[ 0 ] : elem - ); - }, - - add: function( selector, context ) { - return this.pushStack( - jQuery.uniqueSort( - jQuery.merge( this.get(), jQuery( selector, context ) ) - ) - ); - }, - - addBack: function( selector ) { - return this.add( selector == null ? - this.prevObject : this.prevObject.filter( selector ) - ); - } -} ); - -function sibling( cur, dir ) { - while ( ( cur = cur[ dir ] ) && cur.nodeType !== 1 ) {} - return cur; -} - -jQuery.each( { - parent: function( elem ) { - var parent = elem.parentNode; - return parent && parent.nodeType !== 11 ? parent : null; - }, - parents: function( elem ) { - return dir( elem, "parentNode" ); - }, - parentsUntil: function( elem, i, until ) { - return dir( elem, "parentNode", until ); - }, - next: function( elem ) { - return sibling( elem, "nextSibling" ); - }, - prev: function( elem ) { - return sibling( elem, "previousSibling" ); - }, - nextAll: function( elem ) { - return dir( elem, "nextSibling" ); - }, - prevAll: function( elem ) { - return dir( elem, "previousSibling" ); - }, - nextUntil: function( elem, i, until ) { - return dir( elem, "nextSibling", until ); - }, - prevUntil: function( elem, i, until ) { - return dir( elem, "previousSibling", until ); - }, - siblings: function( elem ) { - return siblings( ( elem.parentNode || {} ).firstChild, elem ); - }, - children: function( elem ) { - return siblings( elem.firstChild ); - }, - contents: function( elem ) { - if ( nodeName( elem, "iframe" ) ) { - return elem.contentDocument; - } - - // Support: IE 9 - 11 only, iOS 7 only, Android Browser <=4.3 only - // Treat the template element as a regular one in browsers that - // don't support it. - if ( nodeName( elem, "template" ) ) { - elem = elem.content || elem; - } - - return jQuery.merge( [], elem.childNodes ); - } -}, function( name, fn ) { - jQuery.fn[ name ] = function( until, selector ) { - var matched = jQuery.map( this, fn, until ); - - if ( name.slice( -5 ) !== "Until" ) { - selector = until; - } - - if ( selector && typeof selector === "string" ) { - matched = jQuery.filter( selector, matched ); - } - - if ( this.length > 1 ) { - - // Remove duplicates - if ( !guaranteedUnique[ name ] ) { - jQuery.uniqueSort( matched ); - } - - // Reverse order for parents* and prev-derivatives - if ( rparentsprev.test( name ) ) { - matched.reverse(); - } - } - - return this.pushStack( matched ); - }; -} ); -var rnothtmlwhite = ( /[^\x20\t\r\n\f]+/g ); - - - -// Convert String-formatted options into Object-formatted ones -function createOptions( options ) { - var object = {}; - jQuery.each( options.match( rnothtmlwhite ) || [], function( _, flag ) { - object[ flag ] = true; - } ); - return object; -} - -/* - * Create a callback list using the following parameters: - * - * options: an optional list of space-separated options that will change how - * the callback list behaves or a more traditional option object - * - * By default a callback list will act like an event callback list and can be - * "fired" multiple times. - * - * Possible options: - * - * once: will ensure the callback list can only be fired once (like a Deferred) - * - * memory: will keep track of previous values and will call any callback added - * after the list has been fired right away with the latest "memorized" - * values (like a Deferred) - * - * unique: will ensure a callback can only be added once (no duplicate in the list) - * - * stopOnFalse: interrupt callings when a callback returns false - * - */ -jQuery.Callbacks = function( options ) { - - // Convert options from String-formatted to Object-formatted if needed - // (we check in cache first) - options = typeof options === "string" ? - createOptions( options ) : - jQuery.extend( {}, options ); - - var // Flag to know if list is currently firing - firing, - - // Last fire value for non-forgettable lists - memory, - - // Flag to know if list was already fired - fired, - - // Flag to prevent firing - locked, - - // Actual callback list - list = [], - - // Queue of execution data for repeatable lists - queue = [], - - // Index of currently firing callback (modified by add/remove as needed) - firingIndex = -1, - - // Fire callbacks - fire = function() { - - // Enforce single-firing - locked = locked || options.once; - - // Execute callbacks for all pending executions, - // respecting firingIndex overrides and runtime changes - fired = firing = true; - for ( ; queue.length; firingIndex = -1 ) { - memory = queue.shift(); - while ( ++firingIndex < list.length ) { - - // Run callback and check for early termination - if ( list[ firingIndex ].apply( memory[ 0 ], memory[ 1 ] ) === false && - options.stopOnFalse ) { - - // Jump to end and forget the data so .add doesn't re-fire - firingIndex = list.length; - memory = false; - } - } - } - - // Forget the data if we're done with it - if ( !options.memory ) { - memory = false; - } - - firing = false; - - // Clean up if we're done firing for good - if ( locked ) { - - // Keep an empty list if we have data for future add calls - if ( memory ) { - list = []; - - // Otherwise, this object is spent - } else { - list = ""; - } - } - }, - - // Actual Callbacks object - self = { - - // Add a callback or a collection of callbacks to the list - add: function() { - if ( list ) { - - // If we have memory from a past run, we should fire after adding - if ( memory && !firing ) { - firingIndex = list.length - 1; - queue.push( memory ); - } - - ( function add( args ) { - jQuery.each( args, function( _, arg ) { - if ( jQuery.isFunction( arg ) ) { - if ( !options.unique || !self.has( arg ) ) { - list.push( arg ); - } - } else if ( arg && arg.length && jQuery.type( arg ) !== "string" ) { - - // Inspect recursively - add( arg ); - } - } ); - } )( arguments ); - - if ( memory && !firing ) { - fire(); - } - } - return this; - }, - - // Remove a callback from the list - remove: function() { - jQuery.each( arguments, function( _, arg ) { - var index; - while ( ( index = jQuery.inArray( arg, list, index ) ) > -1 ) { - list.splice( index, 1 ); - - // Handle firing indexes - if ( index <= firingIndex ) { - firingIndex--; - } - } - } ); - return this; - }, - - // Check if a given callback is in the list. - // If no argument is given, return whether or not list has callbacks attached. - has: function( fn ) { - return fn ? - jQuery.inArray( fn, list ) > -1 : - list.length > 0; - }, - - // Remove all callbacks from the list - empty: function() { - if ( list ) { - list = []; - } - return this; - }, - - // Disable .fire and .add - // Abort any current/pending executions - // Clear all callbacks and values - disable: function() { - locked = queue = []; - list = memory = ""; - return this; - }, - disabled: function() { - return !list; - }, - - // Disable .fire - // Also disable .add unless we have memory (since it would have no effect) - // Abort any pending executions - lock: function() { - locked = queue = []; - if ( !memory && !firing ) { - list = memory = ""; - } - return this; - }, - locked: function() { - return !!locked; - }, - - // Call all callbacks with the given context and arguments - fireWith: function( context, args ) { - if ( !locked ) { - args = args || []; - args = [ context, args.slice ? args.slice() : args ]; - queue.push( args ); - if ( !firing ) { - fire(); - } - } - return this; - }, - - // Call all the callbacks with the given arguments - fire: function() { - self.fireWith( this, arguments ); - return this; - }, - - // To know if the callbacks have already been called at least once - fired: function() { - return !!fired; - } - }; - - return self; -}; - - -function Identity( v ) { - return v; -} -function Thrower( ex ) { - throw ex; -} - -function adoptValue( value, resolve, reject, noValue ) { - var method; - - try { - - // Check for promise aspect first to privilege synchronous behavior - if ( value && jQuery.isFunction( ( method = value.promise ) ) ) { - method.call( value ).done( resolve ).fail( reject ); - - // Other thenables - } else if ( value && jQuery.isFunction( ( method = value.then ) ) ) { - method.call( value, resolve, reject ); - - // Other non-thenables - } else { - - // Control `resolve` arguments by letting Array#slice cast boolean `noValue` to integer: - // * false: [ value ].slice( 0 ) => resolve( value ) - // * true: [ value ].slice( 1 ) => resolve() - resolve.apply( undefined, [ value ].slice( noValue ) ); - } - - // For Promises/A+, convert exceptions into rejections - // Since jQuery.when doesn't unwrap thenables, we can skip the extra checks appearing in - // Deferred#then to conditionally suppress rejection. - } catch ( value ) { - - // Support: Android 4.0 only - // Strict mode functions invoked without .call/.apply get global-object context - reject.apply( undefined, [ value ] ); - } -} - -jQuery.extend( { - - Deferred: function( func ) { - var tuples = [ - - // action, add listener, callbacks, - // ... .then handlers, argument index, [final state] - [ "notify", "progress", jQuery.Callbacks( "memory" ), - jQuery.Callbacks( "memory" ), 2 ], - [ "resolve", "done", jQuery.Callbacks( "once memory" ), - jQuery.Callbacks( "once memory" ), 0, "resolved" ], - [ "reject", "fail", jQuery.Callbacks( "once memory" ), - jQuery.Callbacks( "once memory" ), 1, "rejected" ] - ], - state = "pending", - promise = { - state: function() { - return state; - }, - always: function() { - deferred.done( arguments ).fail( arguments ); - return this; - }, - "catch": function( fn ) { - return promise.then( null, fn ); - }, - - // Keep pipe for back-compat - pipe: function( /* fnDone, fnFail, fnProgress */ ) { - var fns = arguments; - - return jQuery.Deferred( function( newDefer ) { - jQuery.each( tuples, function( i, tuple ) { - - // Map tuples (progress, done, fail) to arguments (done, fail, progress) - var fn = jQuery.isFunction( fns[ tuple[ 4 ] ] ) && fns[ tuple[ 4 ] ]; - - // deferred.progress(function() { bind to newDefer or newDefer.notify }) - // deferred.done(function() { bind to newDefer or newDefer.resolve }) - // deferred.fail(function() { bind to newDefer or newDefer.reject }) - deferred[ tuple[ 1 ] ]( function() { - var returned = fn && fn.apply( this, arguments ); - if ( returned && jQuery.isFunction( returned.promise ) ) { - returned.promise() - .progress( newDefer.notify ) - .done( newDefer.resolve ) - .fail( newDefer.reject ); - } else { - newDefer[ tuple[ 0 ] + "With" ]( - this, - fn ? [ returned ] : arguments - ); - } - } ); - } ); - fns = null; - } ).promise(); - }, - then: function( onFulfilled, onRejected, onProgress ) { - var maxDepth = 0; - function resolve( depth, deferred, handler, special ) { - return function() { - var that = this, - args = arguments, - mightThrow = function() { - var returned, then; - - // Support: Promises/A+ section 2.3.3.3.3 - // https://promisesaplus.com/#point-59 - // Ignore double-resolution attempts - if ( depth < maxDepth ) { - return; - } - - returned = handler.apply( that, args ); - - // Support: Promises/A+ section 2.3.1 - // https://promisesaplus.com/#point-48 - if ( returned === deferred.promise() ) { - throw new TypeError( "Thenable self-resolution" ); - } - - // Support: Promises/A+ sections 2.3.3.1, 3.5 - // https://promisesaplus.com/#point-54 - // https://promisesaplus.com/#point-75 - // Retrieve `then` only once - then = returned && - - // Support: Promises/A+ section 2.3.4 - // https://promisesaplus.com/#point-64 - // Only check objects and functions for thenability - ( typeof returned === "object" || - typeof returned === "function" ) && - returned.then; - - // Handle a returned thenable - if ( jQuery.isFunction( then ) ) { - - // Special processors (notify) just wait for resolution - if ( special ) { - then.call( - returned, - resolve( maxDepth, deferred, Identity, special ), - resolve( maxDepth, deferred, Thrower, special ) - ); - - // Normal processors (resolve) also hook into progress - } else { - - // ...and disregard older resolution values - maxDepth++; - - then.call( - returned, - resolve( maxDepth, deferred, Identity, special ), - resolve( maxDepth, deferred, Thrower, special ), - resolve( maxDepth, deferred, Identity, - deferred.notifyWith ) - ); - } - - // Handle all other returned values - } else { - - // Only substitute handlers pass on context - // and multiple values (non-spec behavior) - if ( handler !== Identity ) { - that = undefined; - args = [ returned ]; - } - - // Process the value(s) - // Default process is resolve - ( special || deferred.resolveWith )( that, args ); - } - }, - - // Only normal processors (resolve) catch and reject exceptions - process = special ? - mightThrow : - function() { - try { - mightThrow(); - } catch ( e ) { - - if ( jQuery.Deferred.exceptionHook ) { - jQuery.Deferred.exceptionHook( e, - process.stackTrace ); - } - - // Support: Promises/A+ section 2.3.3.3.4.1 - // https://promisesaplus.com/#point-61 - // Ignore post-resolution exceptions - if ( depth + 1 >= maxDepth ) { - - // Only substitute handlers pass on context - // and multiple values (non-spec behavior) - if ( handler !== Thrower ) { - that = undefined; - args = [ e ]; - } - - deferred.rejectWith( that, args ); - } - } - }; - - // Support: Promises/A+ section 2.3.3.3.1 - // https://promisesaplus.com/#point-57 - // Re-resolve promises immediately to dodge false rejection from - // subsequent errors - if ( depth ) { - process(); - } else { - - // Call an optional hook to record the stack, in case of exception - // since it's otherwise lost when execution goes async - if ( jQuery.Deferred.getStackHook ) { - process.stackTrace = jQuery.Deferred.getStackHook(); - } - window.setTimeout( process ); - } - }; - } - - return jQuery.Deferred( function( newDefer ) { - - // progress_handlers.add( ... ) - tuples[ 0 ][ 3 ].add( - resolve( - 0, - newDefer, - jQuery.isFunction( onProgress ) ? - onProgress : - Identity, - newDefer.notifyWith - ) - ); - - // fulfilled_handlers.add( ... ) - tuples[ 1 ][ 3 ].add( - resolve( - 0, - newDefer, - jQuery.isFunction( onFulfilled ) ? - onFulfilled : - Identity - ) - ); - - // rejected_handlers.add( ... ) - tuples[ 2 ][ 3 ].add( - resolve( - 0, - newDefer, - jQuery.isFunction( onRejected ) ? - onRejected : - Thrower - ) - ); - } ).promise(); - }, - - // Get a promise for this deferred - // If obj is provided, the promise aspect is added to the object - promise: function( obj ) { - return obj != null ? jQuery.extend( obj, promise ) : promise; - } - }, - deferred = {}; - - // Add list-specific methods - jQuery.each( tuples, function( i, tuple ) { - var list = tuple[ 2 ], - stateString = tuple[ 5 ]; - - // promise.progress = list.add - // promise.done = list.add - // promise.fail = list.add - promise[ tuple[ 1 ] ] = list.add; - - // Handle state - if ( stateString ) { - list.add( - function() { - - // state = "resolved" (i.e., fulfilled) - // state = "rejected" - state = stateString; - }, - - // rejected_callbacks.disable - // fulfilled_callbacks.disable - tuples[ 3 - i ][ 2 ].disable, - - // progress_callbacks.lock - tuples[ 0 ][ 2 ].lock - ); - } - - // progress_handlers.fire - // fulfilled_handlers.fire - // rejected_handlers.fire - list.add( tuple[ 3 ].fire ); - - // deferred.notify = function() { deferred.notifyWith(...) } - // deferred.resolve = function() { deferred.resolveWith(...) } - // deferred.reject = function() { deferred.rejectWith(...) } - deferred[ tuple[ 0 ] ] = function() { - deferred[ tuple[ 0 ] + "With" ]( this === deferred ? undefined : this, arguments ); - return this; - }; - - // deferred.notifyWith = list.fireWith - // deferred.resolveWith = list.fireWith - // deferred.rejectWith = list.fireWith - deferred[ tuple[ 0 ] + "With" ] = list.fireWith; - } ); - - // Make the deferred a promise - promise.promise( deferred ); - - // Call given func if any - if ( func ) { - func.call( deferred, deferred ); - } - - // All done! - return deferred; - }, - - // Deferred helper - when: function( singleValue ) { - var - - // count of uncompleted subordinates - remaining = arguments.length, - - // count of unprocessed arguments - i = remaining, - - // subordinate fulfillment data - resolveContexts = Array( i ), - resolveValues = slice.call( arguments ), - - // the master Deferred - master = jQuery.Deferred(), - - // subordinate callback factory - updateFunc = function( i ) { - return function( value ) { - resolveContexts[ i ] = this; - resolveValues[ i ] = arguments.length > 1 ? slice.call( arguments ) : value; - if ( !( --remaining ) ) { - master.resolveWith( resolveContexts, resolveValues ); - } - }; - }; - - // Single- and empty arguments are adopted like Promise.resolve - if ( remaining <= 1 ) { - adoptValue( singleValue, master.done( updateFunc( i ) ).resolve, master.reject, - !remaining ); - - // Use .then() to unwrap secondary thenables (cf. gh-3000) - if ( master.state() === "pending" || - jQuery.isFunction( resolveValues[ i ] && resolveValues[ i ].then ) ) { - - return master.then(); - } - } - - // Multiple arguments are aggregated like Promise.all array elements - while ( i-- ) { - adoptValue( resolveValues[ i ], updateFunc( i ), master.reject ); - } - - return master.promise(); - } -} ); - - -// These usually indicate a programmer mistake during development, -// warn about them ASAP rather than swallowing them by default. -var rerrorNames = /^(Eval|Internal|Range|Reference|Syntax|Type|URI)Error$/; - -jQuery.Deferred.exceptionHook = function( error, stack ) { - - // Support: IE 8 - 9 only - // Console exists when dev tools are open, which can happen at any time - if ( window.console && window.console.warn && error && rerrorNames.test( error.name ) ) { - window.console.warn( "jQuery.Deferred exception: " + error.message, error.stack, stack ); - } -}; - - - - -jQuery.readyException = function( error ) { - window.setTimeout( function() { - throw error; - } ); -}; - - - - -// The deferred used on DOM ready -var readyList = jQuery.Deferred(); - -jQuery.fn.ready = function( fn ) { - - readyList - .then( fn ) - - // Wrap jQuery.readyException in a function so that the lookup - // happens at the time of error handling instead of callback - // registration. - .catch( function( error ) { - jQuery.readyException( error ); - } ); - - return this; -}; - -jQuery.extend( { - - // Is the DOM ready to be used? Set to true once it occurs. - isReady: false, - - // A counter to track how many items to wait for before - // the ready event fires. See #6781 - readyWait: 1, - - // Handle when the DOM is ready - ready: function( wait ) { - - // Abort if there are pending holds or we're already ready - if ( wait === true ? --jQuery.readyWait : jQuery.isReady ) { - return; - } - - // Remember that the DOM is ready - jQuery.isReady = true; - - // If a normal DOM Ready event fired, decrement, and wait if need be - if ( wait !== true && --jQuery.readyWait > 0 ) { - return; - } - - // If there are functions bound, to execute - readyList.resolveWith( document, [ jQuery ] ); - } -} ); - -jQuery.ready.then = readyList.then; - -// The ready event handler and self cleanup method -function completed() { - document.removeEventListener( "DOMContentLoaded", completed ); - window.removeEventListener( "load", completed ); - jQuery.ready(); -} - -// Catch cases where $(document).ready() is called -// after the browser event has already occurred. -// Support: IE <=9 - 10 only -// Older IE sometimes signals "interactive" too soon -if ( document.readyState === "complete" || - ( document.readyState !== "loading" && !document.documentElement.doScroll ) ) { - - // Handle it asynchronously to allow scripts the opportunity to delay ready - window.setTimeout( jQuery.ready ); - -} else { - - // Use the handy event callback - document.addEventListener( "DOMContentLoaded", completed ); - - // A fallback to window.onload, that will always work - window.addEventListener( "load", completed ); -} - - - - -// Multifunctional method to get and set values of a collection -// The value/s can optionally be executed if it's a function -var access = function( elems, fn, key, value, chainable, emptyGet, raw ) { - var i = 0, - len = elems.length, - bulk = key == null; - - // Sets many values - if ( jQuery.type( key ) === "object" ) { - chainable = true; - for ( i in key ) { - access( elems, fn, i, key[ i ], true, emptyGet, raw ); - } - - // Sets one value - } else if ( value !== undefined ) { - chainable = true; - - if ( !jQuery.isFunction( value ) ) { - raw = true; - } - - if ( bulk ) { - - // Bulk operations run against the entire set - if ( raw ) { - fn.call( elems, value ); - fn = null; - - // ...except when executing function values - } else { - bulk = fn; - fn = function( elem, key, value ) { - return bulk.call( jQuery( elem ), value ); - }; - } - } - - if ( fn ) { - for ( ; i < len; i++ ) { - fn( - elems[ i ], key, raw ? - value : - value.call( elems[ i ], i, fn( elems[ i ], key ) ) - ); - } - } - } - - if ( chainable ) { - return elems; - } - - // Gets - if ( bulk ) { - return fn.call( elems ); - } - - return len ? fn( elems[ 0 ], key ) : emptyGet; -}; -var acceptData = function( owner ) { - - // Accepts only: - // - Node - // - Node.ELEMENT_NODE - // - Node.DOCUMENT_NODE - // - Object - // - Any - return owner.nodeType === 1 || owner.nodeType === 9 || !( +owner.nodeType ); -}; - - - - -function Data() { - this.expando = jQuery.expando + Data.uid++; -} - -Data.uid = 1; - -Data.prototype = { - - cache: function( owner ) { - - // Check if the owner object already has a cache - var value = owner[ this.expando ]; - - // If not, create one - if ( !value ) { - value = {}; - - // We can accept data for non-element nodes in modern browsers, - // but we should not, see #8335. - // Always return an empty object. - if ( acceptData( owner ) ) { - - // If it is a node unlikely to be stringify-ed or looped over - // use plain assignment - if ( owner.nodeType ) { - owner[ this.expando ] = value; - - // Otherwise secure it in a non-enumerable property - // configurable must be true to allow the property to be - // deleted when data is removed - } else { - Object.defineProperty( owner, this.expando, { - value: value, - configurable: true - } ); - } - } - } - - return value; - }, - set: function( owner, data, value ) { - var prop, - cache = this.cache( owner ); - - // Handle: [ owner, key, value ] args - // Always use camelCase key (gh-2257) - if ( typeof data === "string" ) { - cache[ jQuery.camelCase( data ) ] = value; - - // Handle: [ owner, { properties } ] args - } else { - - // Copy the properties one-by-one to the cache object - for ( prop in data ) { - cache[ jQuery.camelCase( prop ) ] = data[ prop ]; - } - } - return cache; - }, - get: function( owner, key ) { - return key === undefined ? - this.cache( owner ) : - - // Always use camelCase key (gh-2257) - owner[ this.expando ] && owner[ this.expando ][ jQuery.camelCase( key ) ]; - }, - access: function( owner, key, value ) { - - // In cases where either: - // - // 1. No key was specified - // 2. A string key was specified, but no value provided - // - // Take the "read" path and allow the get method to determine - // which value to return, respectively either: - // - // 1. The entire cache object - // 2. The data stored at the key - // - if ( key === undefined || - ( ( key && typeof key === "string" ) && value === undefined ) ) { - - return this.get( owner, key ); - } - - // When the key is not a string, or both a key and value - // are specified, set or extend (existing objects) with either: - // - // 1. An object of properties - // 2. A key and value - // - this.set( owner, key, value ); - - // Since the "set" path can have two possible entry points - // return the expected data based on which path was taken[*] - return value !== undefined ? value : key; - }, - remove: function( owner, key ) { - var i, - cache = owner[ this.expando ]; - - if ( cache === undefined ) { - return; - } - - if ( key !== undefined ) { - - // Support array or space separated string of keys - if ( Array.isArray( key ) ) { - - // If key is an array of keys... - // We always set camelCase keys, so remove that. - key = key.map( jQuery.camelCase ); - } else { - key = jQuery.camelCase( key ); - - // If a key with the spaces exists, use it. - // Otherwise, create an array by matching non-whitespace - key = key in cache ? - [ key ] : - ( key.match( rnothtmlwhite ) || [] ); - } - - i = key.length; - - while ( i-- ) { - delete cache[ key[ i ] ]; - } - } - - // Remove the expando if there's no more data - if ( key === undefined || jQuery.isEmptyObject( cache ) ) { - - // Support: Chrome <=35 - 45 - // Webkit & Blink performance suffers when deleting properties - // from DOM nodes, so set to undefined instead - // https://bugs.chromium.org/p/chromium/issues/detail?id=378607 (bug restricted) - if ( owner.nodeType ) { - owner[ this.expando ] = undefined; - } else { - delete owner[ this.expando ]; - } - } - }, - hasData: function( owner ) { - var cache = owner[ this.expando ]; - return cache !== undefined && !jQuery.isEmptyObject( cache ); - } -}; -var dataPriv = new Data(); - -var dataUser = new Data(); - - - -// Implementation Summary -// -// 1. Enforce API surface and semantic compatibility with 1.9.x branch -// 2. Improve the module's maintainability by reducing the storage -// paths to a single mechanism. -// 3. Use the same single mechanism to support "private" and "user" data. -// 4. _Never_ expose "private" data to user code (TODO: Drop _data, _removeData) -// 5. Avoid exposing implementation details on user objects (eg. expando properties) -// 6. Provide a clear path for implementation upgrade to WeakMap in 2014 - -var rbrace = /^(?:\{[\w\W]*\}|\[[\w\W]*\])$/, - rmultiDash = /[A-Z]/g; - -function getData( data ) { - if ( data === "true" ) { - return true; - } - - if ( data === "false" ) { - return false; - } - - if ( data === "null" ) { - return null; - } - - // Only convert to a number if it doesn't change the string - if ( data === +data + "" ) { - return +data; - } - - if ( rbrace.test( data ) ) { - return JSON.parse( data ); - } - - return data; -} - -function dataAttr( elem, key, data ) { - var name; - - // If nothing was found internally, try to fetch any - // data from the HTML5 data-* attribute - if ( data === undefined && elem.nodeType === 1 ) { - name = "data-" + key.replace( rmultiDash, "-$&" ).toLowerCase(); - data = elem.getAttribute( name ); - - if ( typeof data === "string" ) { - try { - data = getData( data ); - } catch ( e ) {} - - // Make sure we set the data so it isn't changed later - dataUser.set( elem, key, data ); - } else { - data = undefined; - } - } - return data; -} - -jQuery.extend( { - hasData: function( elem ) { - return dataUser.hasData( elem ) || dataPriv.hasData( elem ); - }, - - data: function( elem, name, data ) { - return dataUser.access( elem, name, data ); - }, - - removeData: function( elem, name ) { - dataUser.remove( elem, name ); - }, - - // TODO: Now that all calls to _data and _removeData have been replaced - // with direct calls to dataPriv methods, these can be deprecated. - _data: function( elem, name, data ) { - return dataPriv.access( elem, name, data ); - }, - - _removeData: function( elem, name ) { - dataPriv.remove( elem, name ); - } -} ); - -jQuery.fn.extend( { - data: function( key, value ) { - var i, name, data, - elem = this[ 0 ], - attrs = elem && elem.attributes; - - // Gets all values - if ( key === undefined ) { - if ( this.length ) { - data = dataUser.get( elem ); - - if ( elem.nodeType === 1 && !dataPriv.get( elem, "hasDataAttrs" ) ) { - i = attrs.length; - while ( i-- ) { - - // Support: IE 11 only - // The attrs elements can be null (#14894) - if ( attrs[ i ] ) { - name = attrs[ i ].name; - if ( name.indexOf( "data-" ) === 0 ) { - name = jQuery.camelCase( name.slice( 5 ) ); - dataAttr( elem, name, data[ name ] ); - } - } - } - dataPriv.set( elem, "hasDataAttrs", true ); - } - } - - return data; - } - - // Sets multiple values - if ( typeof key === "object" ) { - return this.each( function() { - dataUser.set( this, key ); - } ); - } - - return access( this, function( value ) { - var data; - - // The calling jQuery object (element matches) is not empty - // (and therefore has an element appears at this[ 0 ]) and the - // `value` parameter was not undefined. An empty jQuery object - // will result in `undefined` for elem = this[ 0 ] which will - // throw an exception if an attempt to read a data cache is made. - if ( elem && value === undefined ) { - - // Attempt to get data from the cache - // The key will always be camelCased in Data - data = dataUser.get( elem, key ); - if ( data !== undefined ) { - return data; - } - - // Attempt to "discover" the data in - // HTML5 custom data-* attrs - data = dataAttr( elem, key ); - if ( data !== undefined ) { - return data; - } - - // We tried really hard, but the data doesn't exist. - return; - } - - // Set the data... - this.each( function() { - - // We always store the camelCased key - dataUser.set( this, key, value ); - } ); - }, null, value, arguments.length > 1, null, true ); - }, - - removeData: function( key ) { - return this.each( function() { - dataUser.remove( this, key ); - } ); - } -} ); - - -jQuery.extend( { - queue: function( elem, type, data ) { - var queue; - - if ( elem ) { - type = ( type || "fx" ) + "queue"; - queue = dataPriv.get( elem, type ); - - // Speed up dequeue by getting out quickly if this is just a lookup - if ( data ) { - if ( !queue || Array.isArray( data ) ) { - queue = dataPriv.access( elem, type, jQuery.makeArray( data ) ); - } else { - queue.push( data ); - } - } - return queue || []; - } - }, - - dequeue: function( elem, type ) { - type = type || "fx"; - - var queue = jQuery.queue( elem, type ), - startLength = queue.length, - fn = queue.shift(), - hooks = jQuery._queueHooks( elem, type ), - next = function() { - jQuery.dequeue( elem, type ); - }; - - // If the fx queue is dequeued, always remove the progress sentinel - if ( fn === "inprogress" ) { - fn = queue.shift(); - startLength--; - } - - if ( fn ) { - - // Add a progress sentinel to prevent the fx queue from being - // automatically dequeued - if ( type === "fx" ) { - queue.unshift( "inprogress" ); - } - - // Clear up the last queue stop function - delete hooks.stop; - fn.call( elem, next, hooks ); - } - - if ( !startLength && hooks ) { - hooks.empty.fire(); - } - }, - - // Not public - generate a queueHooks object, or return the current one - _queueHooks: function( elem, type ) { - var key = type + "queueHooks"; - return dataPriv.get( elem, key ) || dataPriv.access( elem, key, { - empty: jQuery.Callbacks( "once memory" ).add( function() { - dataPriv.remove( elem, [ type + "queue", key ] ); - } ) - } ); - } -} ); - -jQuery.fn.extend( { - queue: function( type, data ) { - var setter = 2; - - if ( typeof type !== "string" ) { - data = type; - type = "fx"; - setter--; - } - - if ( arguments.length < setter ) { - return jQuery.queue( this[ 0 ], type ); - } - - return data === undefined ? - this : - this.each( function() { - var queue = jQuery.queue( this, type, data ); - - // Ensure a hooks for this queue - jQuery._queueHooks( this, type ); - - if ( type === "fx" && queue[ 0 ] !== "inprogress" ) { - jQuery.dequeue( this, type ); - } - } ); - }, - dequeue: function( type ) { - return this.each( function() { - jQuery.dequeue( this, type ); - } ); - }, - clearQueue: function( type ) { - return this.queue( type || "fx", [] ); - }, - - // Get a promise resolved when queues of a certain type - // are emptied (fx is the type by default) - promise: function( type, obj ) { - var tmp, - count = 1, - defer = jQuery.Deferred(), - elements = this, - i = this.length, - resolve = function() { - if ( !( --count ) ) { - defer.resolveWith( elements, [ elements ] ); - } - }; - - if ( typeof type !== "string" ) { - obj = type; - type = undefined; - } - type = type || "fx"; - - while ( i-- ) { - tmp = dataPriv.get( elements[ i ], type + "queueHooks" ); - if ( tmp && tmp.empty ) { - count++; - tmp.empty.add( resolve ); - } - } - resolve(); - return defer.promise( obj ); - } -} ); -var pnum = ( /[+-]?(?:\d*\.|)\d+(?:[eE][+-]?\d+|)/ ).source; - -var rcssNum = new RegExp( "^(?:([+-])=|)(" + pnum + ")([a-z%]*)$", "i" ); - - -var cssExpand = [ "Top", "Right", "Bottom", "Left" ]; - -var isHiddenWithinTree = function( elem, el ) { - - // isHiddenWithinTree might be called from jQuery#filter function; - // in that case, element will be second argument - elem = el || elem; - - // Inline style trumps all - return elem.style.display === "none" || - elem.style.display === "" && - - // Otherwise, check computed style - // Support: Firefox <=43 - 45 - // Disconnected elements can have computed display: none, so first confirm that elem is - // in the document. - jQuery.contains( elem.ownerDocument, elem ) && - - jQuery.css( elem, "display" ) === "none"; - }; - -var swap = function( elem, options, callback, args ) { - var ret, name, - old = {}; - - // Remember the old values, and insert the new ones - for ( name in options ) { - old[ name ] = elem.style[ name ]; - elem.style[ name ] = options[ name ]; - } - - ret = callback.apply( elem, args || [] ); - - // Revert the old values - for ( name in options ) { - elem.style[ name ] = old[ name ]; - } - - return ret; -}; - - - - -function adjustCSS( elem, prop, valueParts, tween ) { - var adjusted, - scale = 1, - maxIterations = 20, - currentValue = tween ? - function() { - return tween.cur(); - } : - function() { - return jQuery.css( elem, prop, "" ); - }, - initial = currentValue(), - unit = valueParts && valueParts[ 3 ] || ( jQuery.cssNumber[ prop ] ? "" : "px" ), - - // Starting value computation is required for potential unit mismatches - initialInUnit = ( jQuery.cssNumber[ prop ] || unit !== "px" && +initial ) && - rcssNum.exec( jQuery.css( elem, prop ) ); - - if ( initialInUnit && initialInUnit[ 3 ] !== unit ) { - - // Trust units reported by jQuery.css - unit = unit || initialInUnit[ 3 ]; - - // Make sure we update the tween properties later on - valueParts = valueParts || []; - - // Iteratively approximate from a nonzero starting point - initialInUnit = +initial || 1; - - do { - - // If previous iteration zeroed out, double until we get *something*. - // Use string for doubling so we don't accidentally see scale as unchanged below - scale = scale || ".5"; - - // Adjust and apply - initialInUnit = initialInUnit / scale; - jQuery.style( elem, prop, initialInUnit + unit ); - - // Update scale, tolerating zero or NaN from tween.cur() - // Break the loop if scale is unchanged or perfect, or if we've just had enough. - } while ( - scale !== ( scale = currentValue() / initial ) && scale !== 1 && --maxIterations - ); - } - - if ( valueParts ) { - initialInUnit = +initialInUnit || +initial || 0; - - // Apply relative offset (+=/-=) if specified - adjusted = valueParts[ 1 ] ? - initialInUnit + ( valueParts[ 1 ] + 1 ) * valueParts[ 2 ] : - +valueParts[ 2 ]; - if ( tween ) { - tween.unit = unit; - tween.start = initialInUnit; - tween.end = adjusted; - } - } - return adjusted; -} - - -var defaultDisplayMap = {}; - -function getDefaultDisplay( elem ) { - var temp, - doc = elem.ownerDocument, - nodeName = elem.nodeName, - display = defaultDisplayMap[ nodeName ]; - - if ( display ) { - return display; - } - - temp = doc.body.appendChild( doc.createElement( nodeName ) ); - display = jQuery.css( temp, "display" ); - - temp.parentNode.removeChild( temp ); - - if ( display === "none" ) { - display = "block"; - } - defaultDisplayMap[ nodeName ] = display; - - return display; -} - -function showHide( elements, show ) { - var display, elem, - values = [], - index = 0, - length = elements.length; - - // Determine new display value for elements that need to change - for ( ; index < length; index++ ) { - elem = elements[ index ]; - if ( !elem.style ) { - continue; - } - - display = elem.style.display; - if ( show ) { - - // Since we force visibility upon cascade-hidden elements, an immediate (and slow) - // check is required in this first loop unless we have a nonempty display value (either - // inline or about-to-be-restored) - if ( display === "none" ) { - values[ index ] = dataPriv.get( elem, "display" ) || null; - if ( !values[ index ] ) { - elem.style.display = ""; - } - } - if ( elem.style.display === "" && isHiddenWithinTree( elem ) ) { - values[ index ] = getDefaultDisplay( elem ); - } - } else { - if ( display !== "none" ) { - values[ index ] = "none"; - - // Remember what we're overwriting - dataPriv.set( elem, "display", display ); - } - } - } - - // Set the display of the elements in a second loop to avoid constant reflow - for ( index = 0; index < length; index++ ) { - if ( values[ index ] != null ) { - elements[ index ].style.display = values[ index ]; - } - } - - return elements; -} - -jQuery.fn.extend( { - show: function() { - return showHide( this, true ); - }, - hide: function() { - return showHide( this ); - }, - toggle: function( state ) { - if ( typeof state === "boolean" ) { - return state ? this.show() : this.hide(); - } - - return this.each( function() { - if ( isHiddenWithinTree( this ) ) { - jQuery( this ).show(); - } else { - jQuery( this ).hide(); - } - } ); - } -} ); -var rcheckableType = ( /^(?:checkbox|radio)$/i ); - -var rtagName = ( /<([a-z][^\/\0>\x20\t\r\n\f]+)/i ); - -var rscriptType = ( /^$|\/(?:java|ecma)script/i ); - - - -// We have to close these tags to support XHTML (#13200) -var wrapMap = { - - // Support: IE <=9 only - option: [ 1, "" ], - - // XHTML parsers do not magically insert elements in the - // same way that tag soup parsers do. So we cannot shorten - // this by omitting

    ", "
    " ], - col: [ 2, "", "
    " ], - tr: [ 2, "", "
    " ], - td: [ 3, "", "
    " ], - - _default: [ 0, "", "" ] -}; - -// Support: IE <=9 only -wrapMap.optgroup = wrapMap.option; - -wrapMap.tbody = wrapMap.tfoot = wrapMap.colgroup = wrapMap.caption = wrapMap.thead; -wrapMap.th = wrapMap.td; - - -function getAll( context, tag ) { - - // Support: IE <=9 - 11 only - // Use typeof to avoid zero-argument method invocation on host objects (#15151) - var ret; - - if ( typeof context.getElementsByTagName !== "undefined" ) { - ret = context.getElementsByTagName( tag || "*" ); - - } else if ( typeof context.querySelectorAll !== "undefined" ) { - ret = context.querySelectorAll( tag || "*" ); - - } else { - ret = []; - } - - if ( tag === undefined || tag && nodeName( context, tag ) ) { - return jQuery.merge( [ context ], ret ); - } - - return ret; -} - - -// Mark scripts as having already been evaluated -function setGlobalEval( elems, refElements ) { - var i = 0, - l = elems.length; - - for ( ; i < l; i++ ) { - dataPriv.set( - elems[ i ], - "globalEval", - !refElements || dataPriv.get( refElements[ i ], "globalEval" ) - ); - } -} - - -var rhtml = /<|&#?\w+;/; - -function buildFragment( elems, context, scripts, selection, ignored ) { - var elem, tmp, tag, wrap, contains, j, - fragment = context.createDocumentFragment(), - nodes = [], - i = 0, - l = elems.length; - - for ( ; i < l; i++ ) { - elem = elems[ i ]; - - if ( elem || elem === 0 ) { - - // Add nodes directly - if ( jQuery.type( elem ) === "object" ) { - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - jQuery.merge( nodes, elem.nodeType ? [ elem ] : elem ); - - // Convert non-html into a text node - } else if ( !rhtml.test( elem ) ) { - nodes.push( context.createTextNode( elem ) ); - - // Convert html into DOM nodes - } else { - tmp = tmp || fragment.appendChild( context.createElement( "div" ) ); - - // Deserialize a standard representation - tag = ( rtagName.exec( elem ) || [ "", "" ] )[ 1 ].toLowerCase(); - wrap = wrapMap[ tag ] || wrapMap._default; - tmp.innerHTML = wrap[ 1 ] + jQuery.htmlPrefilter( elem ) + wrap[ 2 ]; - - // Descend through wrappers to the right content - j = wrap[ 0 ]; - while ( j-- ) { - tmp = tmp.lastChild; - } - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - jQuery.merge( nodes, tmp.childNodes ); - - // Remember the top-level container - tmp = fragment.firstChild; - - // Ensure the created nodes are orphaned (#12392) - tmp.textContent = ""; - } - } - } - - // Remove wrapper from fragment - fragment.textContent = ""; - - i = 0; - while ( ( elem = nodes[ i++ ] ) ) { - - // Skip elements already in the context collection (trac-4087) - if ( selection && jQuery.inArray( elem, selection ) > -1 ) { - if ( ignored ) { - ignored.push( elem ); - } - continue; - } - - contains = jQuery.contains( elem.ownerDocument, elem ); - - // Append to fragment - tmp = getAll( fragment.appendChild( elem ), "script" ); - - // Preserve script evaluation history - if ( contains ) { - setGlobalEval( tmp ); - } - - // Capture executables - if ( scripts ) { - j = 0; - while ( ( elem = tmp[ j++ ] ) ) { - if ( rscriptType.test( elem.type || "" ) ) { - scripts.push( elem ); - } - } - } - } - - return fragment; -} - - -( function() { - var fragment = document.createDocumentFragment(), - div = fragment.appendChild( document.createElement( "div" ) ), - input = document.createElement( "input" ); - - // Support: Android 4.0 - 4.3 only - // Check state lost if the name is set (#11217) - // Support: Windows Web Apps (WWA) - // `name` and `type` must use .setAttribute for WWA (#14901) - input.setAttribute( "type", "radio" ); - input.setAttribute( "checked", "checked" ); - input.setAttribute( "name", "t" ); - - div.appendChild( input ); - - // Support: Android <=4.1 only - // Older WebKit doesn't clone checked state correctly in fragments - support.checkClone = div.cloneNode( true ).cloneNode( true ).lastChild.checked; - - // Support: IE <=11 only - // Make sure textarea (and checkbox) defaultValue is properly cloned - div.innerHTML = ""; - support.noCloneChecked = !!div.cloneNode( true ).lastChild.defaultValue; -} )(); -var documentElement = document.documentElement; - - - -var - rkeyEvent = /^key/, - rmouseEvent = /^(?:mouse|pointer|contextmenu|drag|drop)|click/, - rtypenamespace = /^([^.]*)(?:\.(.+)|)/; - -function returnTrue() { - return true; -} - -function returnFalse() { - return false; -} - -// Support: IE <=9 only -// See #13393 for more info -function safeActiveElement() { - try { - return document.activeElement; - } catch ( err ) { } -} - -function on( elem, types, selector, data, fn, one ) { - var origFn, type; - - // Types can be a map of types/handlers - if ( typeof types === "object" ) { - - // ( types-Object, selector, data ) - if ( typeof selector !== "string" ) { - - // ( types-Object, data ) - data = data || selector; - selector = undefined; - } - for ( type in types ) { - on( elem, type, selector, data, types[ type ], one ); - } - return elem; - } - - if ( data == null && fn == null ) { - - // ( types, fn ) - fn = selector; - data = selector = undefined; - } else if ( fn == null ) { - if ( typeof selector === "string" ) { - - // ( types, selector, fn ) - fn = data; - data = undefined; - } else { - - // ( types, data, fn ) - fn = data; - data = selector; - selector = undefined; - } - } - if ( fn === false ) { - fn = returnFalse; - } else if ( !fn ) { - return elem; - } - - if ( one === 1 ) { - origFn = fn; - fn = function( event ) { - - // Can use an empty set, since event contains the info - jQuery().off( event ); - return origFn.apply( this, arguments ); - }; - - // Use same guid so caller can remove using origFn - fn.guid = origFn.guid || ( origFn.guid = jQuery.guid++ ); - } - return elem.each( function() { - jQuery.event.add( this, types, fn, data, selector ); - } ); -} - -/* - * Helper functions for managing events -- not part of the public interface. - * Props to Dean Edwards' addEvent library for many of the ideas. - */ -jQuery.event = { - - global: {}, - - add: function( elem, types, handler, data, selector ) { - - var handleObjIn, eventHandle, tmp, - events, t, handleObj, - special, handlers, type, namespaces, origType, - elemData = dataPriv.get( elem ); - - // Don't attach events to noData or text/comment nodes (but allow plain objects) - if ( !elemData ) { - return; - } - - // Caller can pass in an object of custom data in lieu of the handler - if ( handler.handler ) { - handleObjIn = handler; - handler = handleObjIn.handler; - selector = handleObjIn.selector; - } - - // Ensure that invalid selectors throw exceptions at attach time - // Evaluate against documentElement in case elem is a non-element node (e.g., document) - if ( selector ) { - jQuery.find.matchesSelector( documentElement, selector ); - } - - // Make sure that the handler has a unique ID, used to find/remove it later - if ( !handler.guid ) { - handler.guid = jQuery.guid++; - } - - // Init the element's event structure and main handler, if this is the first - if ( !( events = elemData.events ) ) { - events = elemData.events = {}; - } - if ( !( eventHandle = elemData.handle ) ) { - eventHandle = elemData.handle = function( e ) { - - // Discard the second event of a jQuery.event.trigger() and - // when an event is called after a page has unloaded - return typeof jQuery !== "undefined" && jQuery.event.triggered !== e.type ? - jQuery.event.dispatch.apply( elem, arguments ) : undefined; - }; - } - - // Handle multiple events separated by a space - types = ( types || "" ).match( rnothtmlwhite ) || [ "" ]; - t = types.length; - while ( t-- ) { - tmp = rtypenamespace.exec( types[ t ] ) || []; - type = origType = tmp[ 1 ]; - namespaces = ( tmp[ 2 ] || "" ).split( "." ).sort(); - - // There *must* be a type, no attaching namespace-only handlers - if ( !type ) { - continue; - } - - // If event changes its type, use the special event handlers for the changed type - special = jQuery.event.special[ type ] || {}; - - // If selector defined, determine special event api type, otherwise given type - type = ( selector ? special.delegateType : special.bindType ) || type; - - // Update special based on newly reset type - special = jQuery.event.special[ type ] || {}; - - // handleObj is passed to all event handlers - handleObj = jQuery.extend( { - type: type, - origType: origType, - data: data, - handler: handler, - guid: handler.guid, - selector: selector, - needsContext: selector && jQuery.expr.match.needsContext.test( selector ), - namespace: namespaces.join( "." ) - }, handleObjIn ); - - // Init the event handler queue if we're the first - if ( !( handlers = events[ type ] ) ) { - handlers = events[ type ] = []; - handlers.delegateCount = 0; - - // Only use addEventListener if the special events handler returns false - if ( !special.setup || - special.setup.call( elem, data, namespaces, eventHandle ) === false ) { - - if ( elem.addEventListener ) { - elem.addEventListener( type, eventHandle ); - } - } - } - - if ( special.add ) { - special.add.call( elem, handleObj ); - - if ( !handleObj.handler.guid ) { - handleObj.handler.guid = handler.guid; - } - } - - // Add to the element's handler list, delegates in front - if ( selector ) { - handlers.splice( handlers.delegateCount++, 0, handleObj ); - } else { - handlers.push( handleObj ); - } - - // Keep track of which events have ever been used, for event optimization - jQuery.event.global[ type ] = true; - } - - }, - - // Detach an event or set of events from an element - remove: function( elem, types, handler, selector, mappedTypes ) { - - var j, origCount, tmp, - events, t, handleObj, - special, handlers, type, namespaces, origType, - elemData = dataPriv.hasData( elem ) && dataPriv.get( elem ); - - if ( !elemData || !( events = elemData.events ) ) { - return; - } - - // Once for each type.namespace in types; type may be omitted - types = ( types || "" ).match( rnothtmlwhite ) || [ "" ]; - t = types.length; - while ( t-- ) { - tmp = rtypenamespace.exec( types[ t ] ) || []; - type = origType = tmp[ 1 ]; - namespaces = ( tmp[ 2 ] || "" ).split( "." ).sort(); - - // Unbind all events (on this namespace, if provided) for the element - if ( !type ) { - for ( type in events ) { - jQuery.event.remove( elem, type + types[ t ], handler, selector, true ); - } - continue; - } - - special = jQuery.event.special[ type ] || {}; - type = ( selector ? special.delegateType : special.bindType ) || type; - handlers = events[ type ] || []; - tmp = tmp[ 2 ] && - new RegExp( "(^|\\.)" + namespaces.join( "\\.(?:.*\\.|)" ) + "(\\.|$)" ); - - // Remove matching events - origCount = j = handlers.length; - while ( j-- ) { - handleObj = handlers[ j ]; - - if ( ( mappedTypes || origType === handleObj.origType ) && - ( !handler || handler.guid === handleObj.guid ) && - ( !tmp || tmp.test( handleObj.namespace ) ) && - ( !selector || selector === handleObj.selector || - selector === "**" && handleObj.selector ) ) { - handlers.splice( j, 1 ); - - if ( handleObj.selector ) { - handlers.delegateCount--; - } - if ( special.remove ) { - special.remove.call( elem, handleObj ); - } - } - } - - // Remove generic event handler if we removed something and no more handlers exist - // (avoids potential for endless recursion during removal of special event handlers) - if ( origCount && !handlers.length ) { - if ( !special.teardown || - special.teardown.call( elem, namespaces, elemData.handle ) === false ) { - - jQuery.removeEvent( elem, type, elemData.handle ); - } - - delete events[ type ]; - } - } - - // Remove data and the expando if it's no longer used - if ( jQuery.isEmptyObject( events ) ) { - dataPriv.remove( elem, "handle events" ); - } - }, - - dispatch: function( nativeEvent ) { - - // Make a writable jQuery.Event from the native event object - var event = jQuery.event.fix( nativeEvent ); - - var i, j, ret, matched, handleObj, handlerQueue, - args = new Array( arguments.length ), - handlers = ( dataPriv.get( this, "events" ) || {} )[ event.type ] || [], - special = jQuery.event.special[ event.type ] || {}; - - // Use the fix-ed jQuery.Event rather than the (read-only) native event - args[ 0 ] = event; - - for ( i = 1; i < arguments.length; i++ ) { - args[ i ] = arguments[ i ]; - } - - event.delegateTarget = this; - - // Call the preDispatch hook for the mapped type, and let it bail if desired - if ( special.preDispatch && special.preDispatch.call( this, event ) === false ) { - return; - } - - // Determine handlers - handlerQueue = jQuery.event.handlers.call( this, event, handlers ); - - // Run delegates first; they may want to stop propagation beneath us - i = 0; - while ( ( matched = handlerQueue[ i++ ] ) && !event.isPropagationStopped() ) { - event.currentTarget = matched.elem; - - j = 0; - while ( ( handleObj = matched.handlers[ j++ ] ) && - !event.isImmediatePropagationStopped() ) { - - // Triggered event must either 1) have no namespace, or 2) have namespace(s) - // a subset or equal to those in the bound event (both can have no namespace). - if ( !event.rnamespace || event.rnamespace.test( handleObj.namespace ) ) { - - event.handleObj = handleObj; - event.data = handleObj.data; - - ret = ( ( jQuery.event.special[ handleObj.origType ] || {} ).handle || - handleObj.handler ).apply( matched.elem, args ); - - if ( ret !== undefined ) { - if ( ( event.result = ret ) === false ) { - event.preventDefault(); - event.stopPropagation(); - } - } - } - } - } - - // Call the postDispatch hook for the mapped type - if ( special.postDispatch ) { - special.postDispatch.call( this, event ); - } - - return event.result; - }, - - handlers: function( event, handlers ) { - var i, handleObj, sel, matchedHandlers, matchedSelectors, - handlerQueue = [], - delegateCount = handlers.delegateCount, - cur = event.target; - - // Find delegate handlers - if ( delegateCount && - - // Support: IE <=9 - // Black-hole SVG instance trees (trac-13180) - cur.nodeType && - - // Support: Firefox <=42 - // Suppress spec-violating clicks indicating a non-primary pointer button (trac-3861) - // https://www.w3.org/TR/DOM-Level-3-Events/#event-type-click - // Support: IE 11 only - // ...but not arrow key "clicks" of radio inputs, which can have `button` -1 (gh-2343) - !( event.type === "click" && event.button >= 1 ) ) { - - for ( ; cur !== this; cur = cur.parentNode || this ) { - - // Don't check non-elements (#13208) - // Don't process clicks on disabled elements (#6911, #8165, #11382, #11764) - if ( cur.nodeType === 1 && !( event.type === "click" && cur.disabled === true ) ) { - matchedHandlers = []; - matchedSelectors = {}; - for ( i = 0; i < delegateCount; i++ ) { - handleObj = handlers[ i ]; - - // Don't conflict with Object.prototype properties (#13203) - sel = handleObj.selector + " "; - - if ( matchedSelectors[ sel ] === undefined ) { - matchedSelectors[ sel ] = handleObj.needsContext ? - jQuery( sel, this ).index( cur ) > -1 : - jQuery.find( sel, this, null, [ cur ] ).length; - } - if ( matchedSelectors[ sel ] ) { - matchedHandlers.push( handleObj ); - } - } - if ( matchedHandlers.length ) { - handlerQueue.push( { elem: cur, handlers: matchedHandlers } ); - } - } - } - } - - // Add the remaining (directly-bound) handlers - cur = this; - if ( delegateCount < handlers.length ) { - handlerQueue.push( { elem: cur, handlers: handlers.slice( delegateCount ) } ); - } - - return handlerQueue; - }, - - addProp: function( name, hook ) { - Object.defineProperty( jQuery.Event.prototype, name, { - enumerable: true, - configurable: true, - - get: jQuery.isFunction( hook ) ? - function() { - if ( this.originalEvent ) { - return hook( this.originalEvent ); - } - } : - function() { - if ( this.originalEvent ) { - return this.originalEvent[ name ]; - } - }, - - set: function( value ) { - Object.defineProperty( this, name, { - enumerable: true, - configurable: true, - writable: true, - value: value - } ); - } - } ); - }, - - fix: function( originalEvent ) { - return originalEvent[ jQuery.expando ] ? - originalEvent : - new jQuery.Event( originalEvent ); - }, - - special: { - load: { - - // Prevent triggered image.load events from bubbling to window.load - noBubble: true - }, - focus: { - - // Fire native event if possible so blur/focus sequence is correct - trigger: function() { - if ( this !== safeActiveElement() && this.focus ) { - this.focus(); - return false; - } - }, - delegateType: "focusin" - }, - blur: { - trigger: function() { - if ( this === safeActiveElement() && this.blur ) { - this.blur(); - return false; - } - }, - delegateType: "focusout" - }, - click: { - - // For checkbox, fire native event so checked state will be right - trigger: function() { - if ( this.type === "checkbox" && this.click && nodeName( this, "input" ) ) { - this.click(); - return false; - } - }, - - // For cross-browser consistency, don't fire native .click() on links - _default: function( event ) { - return nodeName( event.target, "a" ); - } - }, - - beforeunload: { - postDispatch: function( event ) { - - // Support: Firefox 20+ - // Firefox doesn't alert if the returnValue field is not set. - if ( event.result !== undefined && event.originalEvent ) { - event.originalEvent.returnValue = event.result; - } - } - } - } -}; - -jQuery.removeEvent = function( elem, type, handle ) { - - // This "if" is needed for plain objects - if ( elem.removeEventListener ) { - elem.removeEventListener( type, handle ); - } -}; - -jQuery.Event = function( src, props ) { - - // Allow instantiation without the 'new' keyword - if ( !( this instanceof jQuery.Event ) ) { - return new jQuery.Event( src, props ); - } - - // Event object - if ( src && src.type ) { - this.originalEvent = src; - this.type = src.type; - - // Events bubbling up the document may have been marked as prevented - // by a handler lower down the tree; reflect the correct value. - this.isDefaultPrevented = src.defaultPrevented || - src.defaultPrevented === undefined && - - // Support: Android <=2.3 only - src.returnValue === false ? - returnTrue : - returnFalse; - - // Create target properties - // Support: Safari <=6 - 7 only - // Target should not be a text node (#504, #13143) - this.target = ( src.target && src.target.nodeType === 3 ) ? - src.target.parentNode : - src.target; - - this.currentTarget = src.currentTarget; - this.relatedTarget = src.relatedTarget; - - // Event type - } else { - this.type = src; - } - - // Put explicitly provided properties onto the event object - if ( props ) { - jQuery.extend( this, props ); - } - - // Create a timestamp if incoming event doesn't have one - this.timeStamp = src && src.timeStamp || jQuery.now(); - - // Mark it as fixed - this[ jQuery.expando ] = true; -}; - -// jQuery.Event is based on DOM3 Events as specified by the ECMAScript Language Binding -// https://www.w3.org/TR/2003/WD-DOM-Level-3-Events-20030331/ecma-script-binding.html -jQuery.Event.prototype = { - constructor: jQuery.Event, - isDefaultPrevented: returnFalse, - isPropagationStopped: returnFalse, - isImmediatePropagationStopped: returnFalse, - isSimulated: false, - - preventDefault: function() { - var e = this.originalEvent; - - this.isDefaultPrevented = returnTrue; - - if ( e && !this.isSimulated ) { - e.preventDefault(); - } - }, - stopPropagation: function() { - var e = this.originalEvent; - - this.isPropagationStopped = returnTrue; - - if ( e && !this.isSimulated ) { - e.stopPropagation(); - } - }, - stopImmediatePropagation: function() { - var e = this.originalEvent; - - this.isImmediatePropagationStopped = returnTrue; - - if ( e && !this.isSimulated ) { - e.stopImmediatePropagation(); - } - - this.stopPropagation(); - } -}; - -// Includes all common event props including KeyEvent and MouseEvent specific props -jQuery.each( { - altKey: true, - bubbles: true, - cancelable: true, - changedTouches: true, - ctrlKey: true, - detail: true, - eventPhase: true, - metaKey: true, - pageX: true, - pageY: true, - shiftKey: true, - view: true, - "char": true, - charCode: true, - key: true, - keyCode: true, - button: true, - buttons: true, - clientX: true, - clientY: true, - offsetX: true, - offsetY: true, - pointerId: true, - pointerType: true, - screenX: true, - screenY: true, - targetTouches: true, - toElement: true, - touches: true, - - which: function( event ) { - var button = event.button; - - // Add which for key events - if ( event.which == null && rkeyEvent.test( event.type ) ) { - return event.charCode != null ? event.charCode : event.keyCode; - } - - // Add which for click: 1 === left; 2 === middle; 3 === right - if ( !event.which && button !== undefined && rmouseEvent.test( event.type ) ) { - if ( button & 1 ) { - return 1; - } - - if ( button & 2 ) { - return 3; - } - - if ( button & 4 ) { - return 2; - } - - return 0; - } - - return event.which; - } -}, jQuery.event.addProp ); - -// Create mouseenter/leave events using mouseover/out and event-time checks -// so that event delegation works in jQuery. -// Do the same for pointerenter/pointerleave and pointerover/pointerout -// -// Support: Safari 7 only -// Safari sends mouseenter too often; see: -// https://bugs.chromium.org/p/chromium/issues/detail?id=470258 -// for the description of the bug (it existed in older Chrome versions as well). -jQuery.each( { - mouseenter: "mouseover", - mouseleave: "mouseout", - pointerenter: "pointerover", - pointerleave: "pointerout" -}, function( orig, fix ) { - jQuery.event.special[ orig ] = { - delegateType: fix, - bindType: fix, - - handle: function( event ) { - var ret, - target = this, - related = event.relatedTarget, - handleObj = event.handleObj; - - // For mouseenter/leave call the handler if related is outside the target. - // NB: No relatedTarget if the mouse left/entered the browser window - if ( !related || ( related !== target && !jQuery.contains( target, related ) ) ) { - event.type = handleObj.origType; - ret = handleObj.handler.apply( this, arguments ); - event.type = fix; - } - return ret; - } - }; -} ); - -jQuery.fn.extend( { - - on: function( types, selector, data, fn ) { - return on( this, types, selector, data, fn ); - }, - one: function( types, selector, data, fn ) { - return on( this, types, selector, data, fn, 1 ); - }, - off: function( types, selector, fn ) { - var handleObj, type; - if ( types && types.preventDefault && types.handleObj ) { - - // ( event ) dispatched jQuery.Event - handleObj = types.handleObj; - jQuery( types.delegateTarget ).off( - handleObj.namespace ? - handleObj.origType + "." + handleObj.namespace : - handleObj.origType, - handleObj.selector, - handleObj.handler - ); - return this; - } - if ( typeof types === "object" ) { - - // ( types-object [, selector] ) - for ( type in types ) { - this.off( type, selector, types[ type ] ); - } - return this; - } - if ( selector === false || typeof selector === "function" ) { - - // ( types [, fn] ) - fn = selector; - selector = undefined; - } - if ( fn === false ) { - fn = returnFalse; - } - return this.each( function() { - jQuery.event.remove( this, types, fn, selector ); - } ); - } -} ); - - -var - - /* eslint-disable max-len */ - - // See https://github.com/eslint/eslint/issues/3229 - rxhtmlTag = /<(?!area|br|col|embed|hr|img|input|link|meta|param)(([a-z][^\/\0>\x20\t\r\n\f]*)[^>]*)\/>/gi, - - /* eslint-enable */ - - // Support: IE <=10 - 11, Edge 12 - 13 - // In IE/Edge using regex groups here causes severe slowdowns. - // See https://connect.microsoft.com/IE/feedback/details/1736512/ - rnoInnerhtml = /\s*$/g; - -// Prefer a tbody over its parent table for containing new rows -function manipulationTarget( elem, content ) { - if ( nodeName( elem, "table" ) && - nodeName( content.nodeType !== 11 ? content : content.firstChild, "tr" ) ) { - - return jQuery( ">tbody", elem )[ 0 ] || elem; - } - - return elem; -} - -// Replace/restore the type attribute of script elements for safe DOM manipulation -function disableScript( elem ) { - elem.type = ( elem.getAttribute( "type" ) !== null ) + "/" + elem.type; - return elem; -} -function restoreScript( elem ) { - var match = rscriptTypeMasked.exec( elem.type ); - - if ( match ) { - elem.type = match[ 1 ]; - } else { - elem.removeAttribute( "type" ); - } - - return elem; -} - -function cloneCopyEvent( src, dest ) { - var i, l, type, pdataOld, pdataCur, udataOld, udataCur, events; - - if ( dest.nodeType !== 1 ) { - return; - } - - // 1. Copy private data: events, handlers, etc. - if ( dataPriv.hasData( src ) ) { - pdataOld = dataPriv.access( src ); - pdataCur = dataPriv.set( dest, pdataOld ); - events = pdataOld.events; - - if ( events ) { - delete pdataCur.handle; - pdataCur.events = {}; - - for ( type in events ) { - for ( i = 0, l = events[ type ].length; i < l; i++ ) { - jQuery.event.add( dest, type, events[ type ][ i ] ); - } - } - } - } - - // 2. Copy user data - if ( dataUser.hasData( src ) ) { - udataOld = dataUser.access( src ); - udataCur = jQuery.extend( {}, udataOld ); - - dataUser.set( dest, udataCur ); - } -} - -// Fix IE bugs, see support tests -function fixInput( src, dest ) { - var nodeName = dest.nodeName.toLowerCase(); - - // Fails to persist the checked state of a cloned checkbox or radio button. - if ( nodeName === "input" && rcheckableType.test( src.type ) ) { - dest.checked = src.checked; - - // Fails to return the selected option to the default selected state when cloning options - } else if ( nodeName === "input" || nodeName === "textarea" ) { - dest.defaultValue = src.defaultValue; - } -} - -function domManip( collection, args, callback, ignored ) { - - // Flatten any nested arrays - args = concat.apply( [], args ); - - var fragment, first, scripts, hasScripts, node, doc, - i = 0, - l = collection.length, - iNoClone = l - 1, - value = args[ 0 ], - isFunction = jQuery.isFunction( value ); - - // We can't cloneNode fragments that contain checked, in WebKit - if ( isFunction || - ( l > 1 && typeof value === "string" && - !support.checkClone && rchecked.test( value ) ) ) { - return collection.each( function( index ) { - var self = collection.eq( index ); - if ( isFunction ) { - args[ 0 ] = value.call( this, index, self.html() ); - } - domManip( self, args, callback, ignored ); - } ); - } - - if ( l ) { - fragment = buildFragment( args, collection[ 0 ].ownerDocument, false, collection, ignored ); - first = fragment.firstChild; - - if ( fragment.childNodes.length === 1 ) { - fragment = first; - } - - // Require either new content or an interest in ignored elements to invoke the callback - if ( first || ignored ) { - scripts = jQuery.map( getAll( fragment, "script" ), disableScript ); - hasScripts = scripts.length; - - // Use the original fragment for the last item - // instead of the first because it can end up - // being emptied incorrectly in certain situations (#8070). - for ( ; i < l; i++ ) { - node = fragment; - - if ( i !== iNoClone ) { - node = jQuery.clone( node, true, true ); - - // Keep references to cloned scripts for later restoration - if ( hasScripts ) { - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - jQuery.merge( scripts, getAll( node, "script" ) ); - } - } - - callback.call( collection[ i ], node, i ); - } - - if ( hasScripts ) { - doc = scripts[ scripts.length - 1 ].ownerDocument; - - // Reenable scripts - jQuery.map( scripts, restoreScript ); - - // Evaluate executable scripts on first document insertion - for ( i = 0; i < hasScripts; i++ ) { - node = scripts[ i ]; - if ( rscriptType.test( node.type || "" ) && - !dataPriv.access( node, "globalEval" ) && - jQuery.contains( doc, node ) ) { - - if ( node.src ) { - - // Optional AJAX dependency, but won't run scripts if not present - if ( jQuery._evalUrl ) { - jQuery._evalUrl( node.src ); - } - } else { - DOMEval( node.textContent.replace( rcleanScript, "" ), doc ); - } - } - } - } - } - } - - return collection; -} - -function remove( elem, selector, keepData ) { - var node, - nodes = selector ? jQuery.filter( selector, elem ) : elem, - i = 0; - - for ( ; ( node = nodes[ i ] ) != null; i++ ) { - if ( !keepData && node.nodeType === 1 ) { - jQuery.cleanData( getAll( node ) ); - } - - if ( node.parentNode ) { - if ( keepData && jQuery.contains( node.ownerDocument, node ) ) { - setGlobalEval( getAll( node, "script" ) ); - } - node.parentNode.removeChild( node ); - } - } - - return elem; -} - -jQuery.extend( { - htmlPrefilter: function( html ) { - return html.replace( rxhtmlTag, "<$1>" ); - }, - - clone: function( elem, dataAndEvents, deepDataAndEvents ) { - var i, l, srcElements, destElements, - clone = elem.cloneNode( true ), - inPage = jQuery.contains( elem.ownerDocument, elem ); - - // Fix IE cloning issues - if ( !support.noCloneChecked && ( elem.nodeType === 1 || elem.nodeType === 11 ) && - !jQuery.isXMLDoc( elem ) ) { - - // We eschew Sizzle here for performance reasons: https://jsperf.com/getall-vs-sizzle/2 - destElements = getAll( clone ); - srcElements = getAll( elem ); - - for ( i = 0, l = srcElements.length; i < l; i++ ) { - fixInput( srcElements[ i ], destElements[ i ] ); - } - } - - // Copy the events from the original to the clone - if ( dataAndEvents ) { - if ( deepDataAndEvents ) { - srcElements = srcElements || getAll( elem ); - destElements = destElements || getAll( clone ); - - for ( i = 0, l = srcElements.length; i < l; i++ ) { - cloneCopyEvent( srcElements[ i ], destElements[ i ] ); - } - } else { - cloneCopyEvent( elem, clone ); - } - } - - // Preserve script evaluation history - destElements = getAll( clone, "script" ); - if ( destElements.length > 0 ) { - setGlobalEval( destElements, !inPage && getAll( elem, "script" ) ); - } - - // Return the cloned set - return clone; - }, - - cleanData: function( elems ) { - var data, elem, type, - special = jQuery.event.special, - i = 0; - - for ( ; ( elem = elems[ i ] ) !== undefined; i++ ) { - if ( acceptData( elem ) ) { - if ( ( data = elem[ dataPriv.expando ] ) ) { - if ( data.events ) { - for ( type in data.events ) { - if ( special[ type ] ) { - jQuery.event.remove( elem, type ); - - // This is a shortcut to avoid jQuery.event.remove's overhead - } else { - jQuery.removeEvent( elem, type, data.handle ); - } - } - } - - // Support: Chrome <=35 - 45+ - // Assign undefined instead of using delete, see Data#remove - elem[ dataPriv.expando ] = undefined; - } - if ( elem[ dataUser.expando ] ) { - - // Support: Chrome <=35 - 45+ - // Assign undefined instead of using delete, see Data#remove - elem[ dataUser.expando ] = undefined; - } - } - } - } -} ); - -jQuery.fn.extend( { - detach: function( selector ) { - return remove( this, selector, true ); - }, - - remove: function( selector ) { - return remove( this, selector ); - }, - - text: function( value ) { - return access( this, function( value ) { - return value === undefined ? - jQuery.text( this ) : - this.empty().each( function() { - if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) { - this.textContent = value; - } - } ); - }, null, value, arguments.length ); - }, - - append: function() { - return domManip( this, arguments, function( elem ) { - if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) { - var target = manipulationTarget( this, elem ); - target.appendChild( elem ); - } - } ); - }, - - prepend: function() { - return domManip( this, arguments, function( elem ) { - if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) { - var target = manipulationTarget( this, elem ); - target.insertBefore( elem, target.firstChild ); - } - } ); - }, - - before: function() { - return domManip( this, arguments, function( elem ) { - if ( this.parentNode ) { - this.parentNode.insertBefore( elem, this ); - } - } ); - }, - - after: function() { - return domManip( this, arguments, function( elem ) { - if ( this.parentNode ) { - this.parentNode.insertBefore( elem, this.nextSibling ); - } - } ); - }, - - empty: function() { - var elem, - i = 0; - - for ( ; ( elem = this[ i ] ) != null; i++ ) { - if ( elem.nodeType === 1 ) { - - // Prevent memory leaks - jQuery.cleanData( getAll( elem, false ) ); - - // Remove any remaining nodes - elem.textContent = ""; - } - } - - return this; - }, - - clone: function( dataAndEvents, deepDataAndEvents ) { - dataAndEvents = dataAndEvents == null ? false : dataAndEvents; - deepDataAndEvents = deepDataAndEvents == null ? dataAndEvents : deepDataAndEvents; - - return this.map( function() { - return jQuery.clone( this, dataAndEvents, deepDataAndEvents ); - } ); - }, - - html: function( value ) { - return access( this, function( value ) { - var elem = this[ 0 ] || {}, - i = 0, - l = this.length; - - if ( value === undefined && elem.nodeType === 1 ) { - return elem.innerHTML; - } - - // See if we can take a shortcut and just use innerHTML - if ( typeof value === "string" && !rnoInnerhtml.test( value ) && - !wrapMap[ ( rtagName.exec( value ) || [ "", "" ] )[ 1 ].toLowerCase() ] ) { - - value = jQuery.htmlPrefilter( value ); - - try { - for ( ; i < l; i++ ) { - elem = this[ i ] || {}; - - // Remove element nodes and prevent memory leaks - if ( elem.nodeType === 1 ) { - jQuery.cleanData( getAll( elem, false ) ); - elem.innerHTML = value; - } - } - - elem = 0; - - // If using innerHTML throws an exception, use the fallback method - } catch ( e ) {} - } - - if ( elem ) { - this.empty().append( value ); - } - }, null, value, arguments.length ); - }, - - replaceWith: function() { - var ignored = []; - - // Make the changes, replacing each non-ignored context element with the new content - return domManip( this, arguments, function( elem ) { - var parent = this.parentNode; - - if ( jQuery.inArray( this, ignored ) < 0 ) { - jQuery.cleanData( getAll( this ) ); - if ( parent ) { - parent.replaceChild( elem, this ); - } - } - - // Force callback invocation - }, ignored ); - } -} ); - -jQuery.each( { - appendTo: "append", - prependTo: "prepend", - insertBefore: "before", - insertAfter: "after", - replaceAll: "replaceWith" -}, function( name, original ) { - jQuery.fn[ name ] = function( selector ) { - var elems, - ret = [], - insert = jQuery( selector ), - last = insert.length - 1, - i = 0; - - for ( ; i <= last; i++ ) { - elems = i === last ? this : this.clone( true ); - jQuery( insert[ i ] )[ original ]( elems ); - - // Support: Android <=4.0 only, PhantomJS 1 only - // .get() because push.apply(_, arraylike) throws on ancient WebKit - push.apply( ret, elems.get() ); - } - - return this.pushStack( ret ); - }; -} ); -var rmargin = ( /^margin/ ); - -var rnumnonpx = new RegExp( "^(" + pnum + ")(?!px)[a-z%]+$", "i" ); - -var getStyles = function( elem ) { - - // Support: IE <=11 only, Firefox <=30 (#15098, #14150) - // IE throws on elements created in popups - // FF meanwhile throws on frame elements through "defaultView.getComputedStyle" - var view = elem.ownerDocument.defaultView; - - if ( !view || !view.opener ) { - view = window; - } - - return view.getComputedStyle( elem ); - }; - - - -( function() { - - // Executing both pixelPosition & boxSizingReliable tests require only one layout - // so they're executed at the same time to save the second computation. - function computeStyleTests() { - - // This is a singleton, we need to execute it only once - if ( !div ) { - return; - } - - div.style.cssText = - "box-sizing:border-box;" + - "position:relative;display:block;" + - "margin:auto;border:1px;padding:1px;" + - "top:1%;width:50%"; - div.innerHTML = ""; - documentElement.appendChild( container ); - - var divStyle = window.getComputedStyle( div ); - pixelPositionVal = divStyle.top !== "1%"; - - // Support: Android 4.0 - 4.3 only, Firefox <=3 - 44 - reliableMarginLeftVal = divStyle.marginLeft === "2px"; - boxSizingReliableVal = divStyle.width === "4px"; - - // Support: Android 4.0 - 4.3 only - // Some styles come back with percentage values, even though they shouldn't - div.style.marginRight = "50%"; - pixelMarginRightVal = divStyle.marginRight === "4px"; - - documentElement.removeChild( container ); - - // Nullify the div so it wouldn't be stored in the memory and - // it will also be a sign that checks already performed - div = null; - } - - var pixelPositionVal, boxSizingReliableVal, pixelMarginRightVal, reliableMarginLeftVal, - container = document.createElement( "div" ), - div = document.createElement( "div" ); - - // Finish early in limited (non-browser) environments - if ( !div.style ) { - return; - } - - // Support: IE <=9 - 11 only - // Style of cloned element affects source element cloned (#8908) - div.style.backgroundClip = "content-box"; - div.cloneNode( true ).style.backgroundClip = ""; - support.clearCloneStyle = div.style.backgroundClip === "content-box"; - - container.style.cssText = "border:0;width:8px;height:0;top:0;left:-9999px;" + - "padding:0;margin-top:1px;position:absolute"; - container.appendChild( div ); - - jQuery.extend( support, { - pixelPosition: function() { - computeStyleTests(); - return pixelPositionVal; - }, - boxSizingReliable: function() { - computeStyleTests(); - return boxSizingReliableVal; - }, - pixelMarginRight: function() { - computeStyleTests(); - return pixelMarginRightVal; - }, - reliableMarginLeft: function() { - computeStyleTests(); - return reliableMarginLeftVal; - } - } ); -} )(); - - -function curCSS( elem, name, computed ) { - var width, minWidth, maxWidth, ret, - - // Support: Firefox 51+ - // Retrieving style before computed somehow - // fixes an issue with getting wrong values - // on detached elements - style = elem.style; - - computed = computed || getStyles( elem ); - - // getPropertyValue is needed for: - // .css('filter') (IE 9 only, #12537) - // .css('--customProperty) (#3144) - if ( computed ) { - ret = computed.getPropertyValue( name ) || computed[ name ]; - - if ( ret === "" && !jQuery.contains( elem.ownerDocument, elem ) ) { - ret = jQuery.style( elem, name ); - } - - // A tribute to the "awesome hack by Dean Edwards" - // Android Browser returns percentage for some values, - // but width seems to be reliably pixels. - // This is against the CSSOM draft spec: - // https://drafts.csswg.org/cssom/#resolved-values - if ( !support.pixelMarginRight() && rnumnonpx.test( ret ) && rmargin.test( name ) ) { - - // Remember the original values - width = style.width; - minWidth = style.minWidth; - maxWidth = style.maxWidth; - - // Put in the new values to get a computed value out - style.minWidth = style.maxWidth = style.width = ret; - ret = computed.width; - - // Revert the changed values - style.width = width; - style.minWidth = minWidth; - style.maxWidth = maxWidth; - } - } - - return ret !== undefined ? - - // Support: IE <=9 - 11 only - // IE returns zIndex value as an integer. - ret + "" : - ret; -} - - -function addGetHookIf( conditionFn, hookFn ) { - - // Define the hook, we'll check on the first run if it's really needed. - return { - get: function() { - if ( conditionFn() ) { - - // Hook not needed (or it's not possible to use it due - // to missing dependency), remove it. - delete this.get; - return; - } - - // Hook needed; redefine it so that the support test is not executed again. - return ( this.get = hookFn ).apply( this, arguments ); - } - }; -} - - -var - - // Swappable if display is none or starts with table - // except "table", "table-cell", or "table-caption" - // See here for display values: https://developer.mozilla.org/en-US/docs/CSS/display - rdisplayswap = /^(none|table(?!-c[ea]).+)/, - rcustomProp = /^--/, - cssShow = { position: "absolute", visibility: "hidden", display: "block" }, - cssNormalTransform = { - letterSpacing: "0", - fontWeight: "400" - }, - - cssPrefixes = [ "Webkit", "Moz", "ms" ], - emptyStyle = document.createElement( "div" ).style; - -// Return a css property mapped to a potentially vendor prefixed property -function vendorPropName( name ) { - - // Shortcut for names that are not vendor prefixed - if ( name in emptyStyle ) { - return name; - } - - // Check for vendor prefixed names - var capName = name[ 0 ].toUpperCase() + name.slice( 1 ), - i = cssPrefixes.length; - - while ( i-- ) { - name = cssPrefixes[ i ] + capName; - if ( name in emptyStyle ) { - return name; - } - } -} - -// Return a property mapped along what jQuery.cssProps suggests or to -// a vendor prefixed property. -function finalPropName( name ) { - var ret = jQuery.cssProps[ name ]; - if ( !ret ) { - ret = jQuery.cssProps[ name ] = vendorPropName( name ) || name; - } - return ret; -} - -function setPositiveNumber( elem, value, subtract ) { - - // Any relative (+/-) values have already been - // normalized at this point - var matches = rcssNum.exec( value ); - return matches ? - - // Guard against undefined "subtract", e.g., when used as in cssHooks - Math.max( 0, matches[ 2 ] - ( subtract || 0 ) ) + ( matches[ 3 ] || "px" ) : - value; -} - -function augmentWidthOrHeight( elem, name, extra, isBorderBox, styles ) { - var i, - val = 0; - - // If we already have the right measurement, avoid augmentation - if ( extra === ( isBorderBox ? "border" : "content" ) ) { - i = 4; - - // Otherwise initialize for horizontal or vertical properties - } else { - i = name === "width" ? 1 : 0; - } - - for ( ; i < 4; i += 2 ) { - - // Both box models exclude margin, so add it if we want it - if ( extra === "margin" ) { - val += jQuery.css( elem, extra + cssExpand[ i ], true, styles ); - } - - if ( isBorderBox ) { - - // border-box includes padding, so remove it if we want content - if ( extra === "content" ) { - val -= jQuery.css( elem, "padding" + cssExpand[ i ], true, styles ); - } - - // At this point, extra isn't border nor margin, so remove border - if ( extra !== "margin" ) { - val -= jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles ); - } - } else { - - // At this point, extra isn't content, so add padding - val += jQuery.css( elem, "padding" + cssExpand[ i ], true, styles ); - - // At this point, extra isn't content nor padding, so add border - if ( extra !== "padding" ) { - val += jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles ); - } - } - } - - return val; -} - -function getWidthOrHeight( elem, name, extra ) { - - // Start with computed style - var valueIsBorderBox, - styles = getStyles( elem ), - val = curCSS( elem, name, styles ), - isBorderBox = jQuery.css( elem, "boxSizing", false, styles ) === "border-box"; - - // Computed unit is not pixels. Stop here and return. - if ( rnumnonpx.test( val ) ) { - return val; - } - - // Check for style in case a browser which returns unreliable values - // for getComputedStyle silently falls back to the reliable elem.style - valueIsBorderBox = isBorderBox && - ( support.boxSizingReliable() || val === elem.style[ name ] ); - - // Fall back to offsetWidth/Height when value is "auto" - // This happens for inline elements with no explicit setting (gh-3571) - if ( val === "auto" ) { - val = elem[ "offset" + name[ 0 ].toUpperCase() + name.slice( 1 ) ]; - } - - // Normalize "", auto, and prepare for extra - val = parseFloat( val ) || 0; - - // Use the active box-sizing model to add/subtract irrelevant styles - return ( val + - augmentWidthOrHeight( - elem, - name, - extra || ( isBorderBox ? "border" : "content" ), - valueIsBorderBox, - styles - ) - ) + "px"; -} - -jQuery.extend( { - - // Add in style property hooks for overriding the default - // behavior of getting and setting a style property - cssHooks: { - opacity: { - get: function( elem, computed ) { - if ( computed ) { - - // We should always get a number back from opacity - var ret = curCSS( elem, "opacity" ); - return ret === "" ? "1" : ret; - } - } - } - }, - - // Don't automatically add "px" to these possibly-unitless properties - cssNumber: { - "animationIterationCount": true, - "columnCount": true, - "fillOpacity": true, - "flexGrow": true, - "flexShrink": true, - "fontWeight": true, - "lineHeight": true, - "opacity": true, - "order": true, - "orphans": true, - "widows": true, - "zIndex": true, - "zoom": true - }, - - // Add in properties whose names you wish to fix before - // setting or getting the value - cssProps: { - "float": "cssFloat" - }, - - // Get and set the style property on a DOM Node - style: function( elem, name, value, extra ) { - - // Don't set styles on text and comment nodes - if ( !elem || elem.nodeType === 3 || elem.nodeType === 8 || !elem.style ) { - return; - } - - // Make sure that we're working with the right name - var ret, type, hooks, - origName = jQuery.camelCase( name ), - isCustomProp = rcustomProp.test( name ), - style = elem.style; - - // Make sure that we're working with the right name. We don't - // want to query the value if it is a CSS custom property - // since they are user-defined. - if ( !isCustomProp ) { - name = finalPropName( origName ); - } - - // Gets hook for the prefixed version, then unprefixed version - hooks = jQuery.cssHooks[ name ] || jQuery.cssHooks[ origName ]; - - // Check if we're setting a value - if ( value !== undefined ) { - type = typeof value; - - // Convert "+=" or "-=" to relative numbers (#7345) - if ( type === "string" && ( ret = rcssNum.exec( value ) ) && ret[ 1 ] ) { - value = adjustCSS( elem, name, ret ); - - // Fixes bug #9237 - type = "number"; - } - - // Make sure that null and NaN values aren't set (#7116) - if ( value == null || value !== value ) { - return; - } - - // If a number was passed in, add the unit (except for certain CSS properties) - if ( type === "number" ) { - value += ret && ret[ 3 ] || ( jQuery.cssNumber[ origName ] ? "" : "px" ); - } - - // background-* props affect original clone's values - if ( !support.clearCloneStyle && value === "" && name.indexOf( "background" ) === 0 ) { - style[ name ] = "inherit"; - } - - // If a hook was provided, use that value, otherwise just set the specified value - if ( !hooks || !( "set" in hooks ) || - ( value = hooks.set( elem, value, extra ) ) !== undefined ) { - - if ( isCustomProp ) { - style.setProperty( name, value ); - } else { - style[ name ] = value; - } - } - - } else { - - // If a hook was provided get the non-computed value from there - if ( hooks && "get" in hooks && - ( ret = hooks.get( elem, false, extra ) ) !== undefined ) { - - return ret; - } - - // Otherwise just get the value from the style object - return style[ name ]; - } - }, - - css: function( elem, name, extra, styles ) { - var val, num, hooks, - origName = jQuery.camelCase( name ), - isCustomProp = rcustomProp.test( name ); - - // Make sure that we're working with the right name. We don't - // want to modify the value if it is a CSS custom property - // since they are user-defined. - if ( !isCustomProp ) { - name = finalPropName( origName ); - } - - // Try prefixed name followed by the unprefixed name - hooks = jQuery.cssHooks[ name ] || jQuery.cssHooks[ origName ]; - - // If a hook was provided get the computed value from there - if ( hooks && "get" in hooks ) { - val = hooks.get( elem, true, extra ); - } - - // Otherwise, if a way to get the computed value exists, use that - if ( val === undefined ) { - val = curCSS( elem, name, styles ); - } - - // Convert "normal" to computed value - if ( val === "normal" && name in cssNormalTransform ) { - val = cssNormalTransform[ name ]; - } - - // Make numeric if forced or a qualifier was provided and val looks numeric - if ( extra === "" || extra ) { - num = parseFloat( val ); - return extra === true || isFinite( num ) ? num || 0 : val; - } - - return val; - } -} ); - -jQuery.each( [ "height", "width" ], function( i, name ) { - jQuery.cssHooks[ name ] = { - get: function( elem, computed, extra ) { - if ( computed ) { - - // Certain elements can have dimension info if we invisibly show them - // but it must have a current display style that would benefit - return rdisplayswap.test( jQuery.css( elem, "display" ) ) && - - // Support: Safari 8+ - // Table columns in Safari have non-zero offsetWidth & zero - // getBoundingClientRect().width unless display is changed. - // Support: IE <=11 only - // Running getBoundingClientRect on a disconnected node - // in IE throws an error. - ( !elem.getClientRects().length || !elem.getBoundingClientRect().width ) ? - swap( elem, cssShow, function() { - return getWidthOrHeight( elem, name, extra ); - } ) : - getWidthOrHeight( elem, name, extra ); - } - }, - - set: function( elem, value, extra ) { - var matches, - styles = extra && getStyles( elem ), - subtract = extra && augmentWidthOrHeight( - elem, - name, - extra, - jQuery.css( elem, "boxSizing", false, styles ) === "border-box", - styles - ); - - // Convert to pixels if value adjustment is needed - if ( subtract && ( matches = rcssNum.exec( value ) ) && - ( matches[ 3 ] || "px" ) !== "px" ) { - - elem.style[ name ] = value; - value = jQuery.css( elem, name ); - } - - return setPositiveNumber( elem, value, subtract ); - } - }; -} ); - -jQuery.cssHooks.marginLeft = addGetHookIf( support.reliableMarginLeft, - function( elem, computed ) { - if ( computed ) { - return ( parseFloat( curCSS( elem, "marginLeft" ) ) || - elem.getBoundingClientRect().left - - swap( elem, { marginLeft: 0 }, function() { - return elem.getBoundingClientRect().left; - } ) - ) + "px"; - } - } -); - -// These hooks are used by animate to expand properties -jQuery.each( { - margin: "", - padding: "", - border: "Width" -}, function( prefix, suffix ) { - jQuery.cssHooks[ prefix + suffix ] = { - expand: function( value ) { - var i = 0, - expanded = {}, - - // Assumes a single number if not a string - parts = typeof value === "string" ? value.split( " " ) : [ value ]; - - for ( ; i < 4; i++ ) { - expanded[ prefix + cssExpand[ i ] + suffix ] = - parts[ i ] || parts[ i - 2 ] || parts[ 0 ]; - } - - return expanded; - } - }; - - if ( !rmargin.test( prefix ) ) { - jQuery.cssHooks[ prefix + suffix ].set = setPositiveNumber; - } -} ); - -jQuery.fn.extend( { - css: function( name, value ) { - return access( this, function( elem, name, value ) { - var styles, len, - map = {}, - i = 0; - - if ( Array.isArray( name ) ) { - styles = getStyles( elem ); - len = name.length; - - for ( ; i < len; i++ ) { - map[ name[ i ] ] = jQuery.css( elem, name[ i ], false, styles ); - } - - return map; - } - - return value !== undefined ? - jQuery.style( elem, name, value ) : - jQuery.css( elem, name ); - }, name, value, arguments.length > 1 ); - } -} ); - - -function Tween( elem, options, prop, end, easing ) { - return new Tween.prototype.init( elem, options, prop, end, easing ); -} -jQuery.Tween = Tween; - -Tween.prototype = { - constructor: Tween, - init: function( elem, options, prop, end, easing, unit ) { - this.elem = elem; - this.prop = prop; - this.easing = easing || jQuery.easing._default; - this.options = options; - this.start = this.now = this.cur(); - this.end = end; - this.unit = unit || ( jQuery.cssNumber[ prop ] ? "" : "px" ); - }, - cur: function() { - var hooks = Tween.propHooks[ this.prop ]; - - return hooks && hooks.get ? - hooks.get( this ) : - Tween.propHooks._default.get( this ); - }, - run: function( percent ) { - var eased, - hooks = Tween.propHooks[ this.prop ]; - - if ( this.options.duration ) { - this.pos = eased = jQuery.easing[ this.easing ]( - percent, this.options.duration * percent, 0, 1, this.options.duration - ); - } else { - this.pos = eased = percent; - } - this.now = ( this.end - this.start ) * eased + this.start; - - if ( this.options.step ) { - this.options.step.call( this.elem, this.now, this ); - } - - if ( hooks && hooks.set ) { - hooks.set( this ); - } else { - Tween.propHooks._default.set( this ); - } - return this; - } -}; - -Tween.prototype.init.prototype = Tween.prototype; - -Tween.propHooks = { - _default: { - get: function( tween ) { - var result; - - // Use a property on the element directly when it is not a DOM element, - // or when there is no matching style property that exists. - if ( tween.elem.nodeType !== 1 || - tween.elem[ tween.prop ] != null && tween.elem.style[ tween.prop ] == null ) { - return tween.elem[ tween.prop ]; - } - - // Passing an empty string as a 3rd parameter to .css will automatically - // attempt a parseFloat and fallback to a string if the parse fails. - // Simple values such as "10px" are parsed to Float; - // complex values such as "rotate(1rad)" are returned as-is. - result = jQuery.css( tween.elem, tween.prop, "" ); - - // Empty strings, null, undefined and "auto" are converted to 0. - return !result || result === "auto" ? 0 : result; - }, - set: function( tween ) { - - // Use step hook for back compat. - // Use cssHook if its there. - // Use .style if available and use plain properties where available. - if ( jQuery.fx.step[ tween.prop ] ) { - jQuery.fx.step[ tween.prop ]( tween ); - } else if ( tween.elem.nodeType === 1 && - ( tween.elem.style[ jQuery.cssProps[ tween.prop ] ] != null || - jQuery.cssHooks[ tween.prop ] ) ) { - jQuery.style( tween.elem, tween.prop, tween.now + tween.unit ); - } else { - tween.elem[ tween.prop ] = tween.now; - } - } - } -}; - -// Support: IE <=9 only -// Panic based approach to setting things on disconnected nodes -Tween.propHooks.scrollTop = Tween.propHooks.scrollLeft = { - set: function( tween ) { - if ( tween.elem.nodeType && tween.elem.parentNode ) { - tween.elem[ tween.prop ] = tween.now; - } - } -}; - -jQuery.easing = { - linear: function( p ) { - return p; - }, - swing: function( p ) { - return 0.5 - Math.cos( p * Math.PI ) / 2; - }, - _default: "swing" -}; - -jQuery.fx = Tween.prototype.init; - -// Back compat <1.8 extension point -jQuery.fx.step = {}; - - - - -var - fxNow, inProgress, - rfxtypes = /^(?:toggle|show|hide)$/, - rrun = /queueHooks$/; - -function schedule() { - if ( inProgress ) { - if ( document.hidden === false && window.requestAnimationFrame ) { - window.requestAnimationFrame( schedule ); - } else { - window.setTimeout( schedule, jQuery.fx.interval ); - } - - jQuery.fx.tick(); - } -} - -// Animations created synchronously will run synchronously -function createFxNow() { - window.setTimeout( function() { - fxNow = undefined; - } ); - return ( fxNow = jQuery.now() ); -} - -// Generate parameters to create a standard animation -function genFx( type, includeWidth ) { - var which, - i = 0, - attrs = { height: type }; - - // If we include width, step value is 1 to do all cssExpand values, - // otherwise step value is 2 to skip over Left and Right - includeWidth = includeWidth ? 1 : 0; - for ( ; i < 4; i += 2 - includeWidth ) { - which = cssExpand[ i ]; - attrs[ "margin" + which ] = attrs[ "padding" + which ] = type; - } - - if ( includeWidth ) { - attrs.opacity = attrs.width = type; - } - - return attrs; -} - -function createTween( value, prop, animation ) { - var tween, - collection = ( Animation.tweeners[ prop ] || [] ).concat( Animation.tweeners[ "*" ] ), - index = 0, - length = collection.length; - for ( ; index < length; index++ ) { - if ( ( tween = collection[ index ].call( animation, prop, value ) ) ) { - - // We're done with this property - return tween; - } - } -} - -function defaultPrefilter( elem, props, opts ) { - var prop, value, toggle, hooks, oldfire, propTween, restoreDisplay, display, - isBox = "width" in props || "height" in props, - anim = this, - orig = {}, - style = elem.style, - hidden = elem.nodeType && isHiddenWithinTree( elem ), - dataShow = dataPriv.get( elem, "fxshow" ); - - // Queue-skipping animations hijack the fx hooks - if ( !opts.queue ) { - hooks = jQuery._queueHooks( elem, "fx" ); - if ( hooks.unqueued == null ) { - hooks.unqueued = 0; - oldfire = hooks.empty.fire; - hooks.empty.fire = function() { - if ( !hooks.unqueued ) { - oldfire(); - } - }; - } - hooks.unqueued++; - - anim.always( function() { - - // Ensure the complete handler is called before this completes - anim.always( function() { - hooks.unqueued--; - if ( !jQuery.queue( elem, "fx" ).length ) { - hooks.empty.fire(); - } - } ); - } ); - } - - // Detect show/hide animations - for ( prop in props ) { - value = props[ prop ]; - if ( rfxtypes.test( value ) ) { - delete props[ prop ]; - toggle = toggle || value === "toggle"; - if ( value === ( hidden ? "hide" : "show" ) ) { - - // Pretend to be hidden if this is a "show" and - // there is still data from a stopped show/hide - if ( value === "show" && dataShow && dataShow[ prop ] !== undefined ) { - hidden = true; - - // Ignore all other no-op show/hide data - } else { - continue; - } - } - orig[ prop ] = dataShow && dataShow[ prop ] || jQuery.style( elem, prop ); - } - } - - // Bail out if this is a no-op like .hide().hide() - propTween = !jQuery.isEmptyObject( props ); - if ( !propTween && jQuery.isEmptyObject( orig ) ) { - return; - } - - // Restrict "overflow" and "display" styles during box animations - if ( isBox && elem.nodeType === 1 ) { - - // Support: IE <=9 - 11, Edge 12 - 13 - // Record all 3 overflow attributes because IE does not infer the shorthand - // from identically-valued overflowX and overflowY - opts.overflow = [ style.overflow, style.overflowX, style.overflowY ]; - - // Identify a display type, preferring old show/hide data over the CSS cascade - restoreDisplay = dataShow && dataShow.display; - if ( restoreDisplay == null ) { - restoreDisplay = dataPriv.get( elem, "display" ); - } - display = jQuery.css( elem, "display" ); - if ( display === "none" ) { - if ( restoreDisplay ) { - display = restoreDisplay; - } else { - - // Get nonempty value(s) by temporarily forcing visibility - showHide( [ elem ], true ); - restoreDisplay = elem.style.display || restoreDisplay; - display = jQuery.css( elem, "display" ); - showHide( [ elem ] ); - } - } - - // Animate inline elements as inline-block - if ( display === "inline" || display === "inline-block" && restoreDisplay != null ) { - if ( jQuery.css( elem, "float" ) === "none" ) { - - // Restore the original display value at the end of pure show/hide animations - if ( !propTween ) { - anim.done( function() { - style.display = restoreDisplay; - } ); - if ( restoreDisplay == null ) { - display = style.display; - restoreDisplay = display === "none" ? "" : display; - } - } - style.display = "inline-block"; - } - } - } - - if ( opts.overflow ) { - style.overflow = "hidden"; - anim.always( function() { - style.overflow = opts.overflow[ 0 ]; - style.overflowX = opts.overflow[ 1 ]; - style.overflowY = opts.overflow[ 2 ]; - } ); - } - - // Implement show/hide animations - propTween = false; - for ( prop in orig ) { - - // General show/hide setup for this element animation - if ( !propTween ) { - if ( dataShow ) { - if ( "hidden" in dataShow ) { - hidden = dataShow.hidden; - } - } else { - dataShow = dataPriv.access( elem, "fxshow", { display: restoreDisplay } ); - } - - // Store hidden/visible for toggle so `.stop().toggle()` "reverses" - if ( toggle ) { - dataShow.hidden = !hidden; - } - - // Show elements before animating them - if ( hidden ) { - showHide( [ elem ], true ); - } - - /* eslint-disable no-loop-func */ - - anim.done( function() { - - /* eslint-enable no-loop-func */ - - // The final step of a "hide" animation is actually hiding the element - if ( !hidden ) { - showHide( [ elem ] ); - } - dataPriv.remove( elem, "fxshow" ); - for ( prop in orig ) { - jQuery.style( elem, prop, orig[ prop ] ); - } - } ); - } - - // Per-property setup - propTween = createTween( hidden ? dataShow[ prop ] : 0, prop, anim ); - if ( !( prop in dataShow ) ) { - dataShow[ prop ] = propTween.start; - if ( hidden ) { - propTween.end = propTween.start; - propTween.start = 0; - } - } - } -} - -function propFilter( props, specialEasing ) { - var index, name, easing, value, hooks; - - // camelCase, specialEasing and expand cssHook pass - for ( index in props ) { - name = jQuery.camelCase( index ); - easing = specialEasing[ name ]; - value = props[ index ]; - if ( Array.isArray( value ) ) { - easing = value[ 1 ]; - value = props[ index ] = value[ 0 ]; - } - - if ( index !== name ) { - props[ name ] = value; - delete props[ index ]; - } - - hooks = jQuery.cssHooks[ name ]; - if ( hooks && "expand" in hooks ) { - value = hooks.expand( value ); - delete props[ name ]; - - // Not quite $.extend, this won't overwrite existing keys. - // Reusing 'index' because we have the correct "name" - for ( index in value ) { - if ( !( index in props ) ) { - props[ index ] = value[ index ]; - specialEasing[ index ] = easing; - } - } - } else { - specialEasing[ name ] = easing; - } - } -} - -function Animation( elem, properties, options ) { - var result, - stopped, - index = 0, - length = Animation.prefilters.length, - deferred = jQuery.Deferred().always( function() { - - // Don't match elem in the :animated selector - delete tick.elem; - } ), - tick = function() { - if ( stopped ) { - return false; - } - var currentTime = fxNow || createFxNow(), - remaining = Math.max( 0, animation.startTime + animation.duration - currentTime ), - - // Support: Android 2.3 only - // Archaic crash bug won't allow us to use `1 - ( 0.5 || 0 )` (#12497) - temp = remaining / animation.duration || 0, - percent = 1 - temp, - index = 0, - length = animation.tweens.length; - - for ( ; index < length; index++ ) { - animation.tweens[ index ].run( percent ); - } - - deferred.notifyWith( elem, [ animation, percent, remaining ] ); - - // If there's more to do, yield - if ( percent < 1 && length ) { - return remaining; - } - - // If this was an empty animation, synthesize a final progress notification - if ( !length ) { - deferred.notifyWith( elem, [ animation, 1, 0 ] ); - } - - // Resolve the animation and report its conclusion - deferred.resolveWith( elem, [ animation ] ); - return false; - }, - animation = deferred.promise( { - elem: elem, - props: jQuery.extend( {}, properties ), - opts: jQuery.extend( true, { - specialEasing: {}, - easing: jQuery.easing._default - }, options ), - originalProperties: properties, - originalOptions: options, - startTime: fxNow || createFxNow(), - duration: options.duration, - tweens: [], - createTween: function( prop, end ) { - var tween = jQuery.Tween( elem, animation.opts, prop, end, - animation.opts.specialEasing[ prop ] || animation.opts.easing ); - animation.tweens.push( tween ); - return tween; - }, - stop: function( gotoEnd ) { - var index = 0, - - // If we are going to the end, we want to run all the tweens - // otherwise we skip this part - length = gotoEnd ? animation.tweens.length : 0; - if ( stopped ) { - return this; - } - stopped = true; - for ( ; index < length; index++ ) { - animation.tweens[ index ].run( 1 ); - } - - // Resolve when we played the last frame; otherwise, reject - if ( gotoEnd ) { - deferred.notifyWith( elem, [ animation, 1, 0 ] ); - deferred.resolveWith( elem, [ animation, gotoEnd ] ); - } else { - deferred.rejectWith( elem, [ animation, gotoEnd ] ); - } - return this; - } - } ), - props = animation.props; - - propFilter( props, animation.opts.specialEasing ); - - for ( ; index < length; index++ ) { - result = Animation.prefilters[ index ].call( animation, elem, props, animation.opts ); - if ( result ) { - if ( jQuery.isFunction( result.stop ) ) { - jQuery._queueHooks( animation.elem, animation.opts.queue ).stop = - jQuery.proxy( result.stop, result ); - } - return result; - } - } - - jQuery.map( props, createTween, animation ); - - if ( jQuery.isFunction( animation.opts.start ) ) { - animation.opts.start.call( elem, animation ); - } - - // Attach callbacks from options - animation - .progress( animation.opts.progress ) - .done( animation.opts.done, animation.opts.complete ) - .fail( animation.opts.fail ) - .always( animation.opts.always ); - - jQuery.fx.timer( - jQuery.extend( tick, { - elem: elem, - anim: animation, - queue: animation.opts.queue - } ) - ); - - return animation; -} - -jQuery.Animation = jQuery.extend( Animation, { - - tweeners: { - "*": [ function( prop, value ) { - var tween = this.createTween( prop, value ); - adjustCSS( tween.elem, prop, rcssNum.exec( value ), tween ); - return tween; - } ] - }, - - tweener: function( props, callback ) { - if ( jQuery.isFunction( props ) ) { - callback = props; - props = [ "*" ]; - } else { - props = props.match( rnothtmlwhite ); - } - - var prop, - index = 0, - length = props.length; - - for ( ; index < length; index++ ) { - prop = props[ index ]; - Animation.tweeners[ prop ] = Animation.tweeners[ prop ] || []; - Animation.tweeners[ prop ].unshift( callback ); - } - }, - - prefilters: [ defaultPrefilter ], - - prefilter: function( callback, prepend ) { - if ( prepend ) { - Animation.prefilters.unshift( callback ); - } else { - Animation.prefilters.push( callback ); - } - } -} ); - -jQuery.speed = function( speed, easing, fn ) { - var opt = speed && typeof speed === "object" ? jQuery.extend( {}, speed ) : { - complete: fn || !fn && easing || - jQuery.isFunction( speed ) && speed, - duration: speed, - easing: fn && easing || easing && !jQuery.isFunction( easing ) && easing - }; - - // Go to the end state if fx are off - if ( jQuery.fx.off ) { - opt.duration = 0; - - } else { - if ( typeof opt.duration !== "number" ) { - if ( opt.duration in jQuery.fx.speeds ) { - opt.duration = jQuery.fx.speeds[ opt.duration ]; - - } else { - opt.duration = jQuery.fx.speeds._default; - } - } - } - - // Normalize opt.queue - true/undefined/null -> "fx" - if ( opt.queue == null || opt.queue === true ) { - opt.queue = "fx"; - } - - // Queueing - opt.old = opt.complete; - - opt.complete = function() { - if ( jQuery.isFunction( opt.old ) ) { - opt.old.call( this ); - } - - if ( opt.queue ) { - jQuery.dequeue( this, opt.queue ); - } - }; - - return opt; -}; - -jQuery.fn.extend( { - fadeTo: function( speed, to, easing, callback ) { - - // Show any hidden elements after setting opacity to 0 - return this.filter( isHiddenWithinTree ).css( "opacity", 0 ).show() - - // Animate to the value specified - .end().animate( { opacity: to }, speed, easing, callback ); - }, - animate: function( prop, speed, easing, callback ) { - var empty = jQuery.isEmptyObject( prop ), - optall = jQuery.speed( speed, easing, callback ), - doAnimation = function() { - - // Operate on a copy of prop so per-property easing won't be lost - var anim = Animation( this, jQuery.extend( {}, prop ), optall ); - - // Empty animations, or finishing resolves immediately - if ( empty || dataPriv.get( this, "finish" ) ) { - anim.stop( true ); - } - }; - doAnimation.finish = doAnimation; - - return empty || optall.queue === false ? - this.each( doAnimation ) : - this.queue( optall.queue, doAnimation ); - }, - stop: function( type, clearQueue, gotoEnd ) { - var stopQueue = function( hooks ) { - var stop = hooks.stop; - delete hooks.stop; - stop( gotoEnd ); - }; - - if ( typeof type !== "string" ) { - gotoEnd = clearQueue; - clearQueue = type; - type = undefined; - } - if ( clearQueue && type !== false ) { - this.queue( type || "fx", [] ); - } - - return this.each( function() { - var dequeue = true, - index = type != null && type + "queueHooks", - timers = jQuery.timers, - data = dataPriv.get( this ); - - if ( index ) { - if ( data[ index ] && data[ index ].stop ) { - stopQueue( data[ index ] ); - } - } else { - for ( index in data ) { - if ( data[ index ] && data[ index ].stop && rrun.test( index ) ) { - stopQueue( data[ index ] ); - } - } - } - - for ( index = timers.length; index--; ) { - if ( timers[ index ].elem === this && - ( type == null || timers[ index ].queue === type ) ) { - - timers[ index ].anim.stop( gotoEnd ); - dequeue = false; - timers.splice( index, 1 ); - } - } - - // Start the next in the queue if the last step wasn't forced. - // Timers currently will call their complete callbacks, which - // will dequeue but only if they were gotoEnd. - if ( dequeue || !gotoEnd ) { - jQuery.dequeue( this, type ); - } - } ); - }, - finish: function( type ) { - if ( type !== false ) { - type = type || "fx"; - } - return this.each( function() { - var index, - data = dataPriv.get( this ), - queue = data[ type + "queue" ], - hooks = data[ type + "queueHooks" ], - timers = jQuery.timers, - length = queue ? queue.length : 0; - - // Enable finishing flag on private data - data.finish = true; - - // Empty the queue first - jQuery.queue( this, type, [] ); - - if ( hooks && hooks.stop ) { - hooks.stop.call( this, true ); - } - - // Look for any active animations, and finish them - for ( index = timers.length; index--; ) { - if ( timers[ index ].elem === this && timers[ index ].queue === type ) { - timers[ index ].anim.stop( true ); - timers.splice( index, 1 ); - } - } - - // Look for any animations in the old queue and finish them - for ( index = 0; index < length; index++ ) { - if ( queue[ index ] && queue[ index ].finish ) { - queue[ index ].finish.call( this ); - } - } - - // Turn off finishing flag - delete data.finish; - } ); - } -} ); - -jQuery.each( [ "toggle", "show", "hide" ], function( i, name ) { - var cssFn = jQuery.fn[ name ]; - jQuery.fn[ name ] = function( speed, easing, callback ) { - return speed == null || typeof speed === "boolean" ? - cssFn.apply( this, arguments ) : - this.animate( genFx( name, true ), speed, easing, callback ); - }; -} ); - -// Generate shortcuts for custom animations -jQuery.each( { - slideDown: genFx( "show" ), - slideUp: genFx( "hide" ), - slideToggle: genFx( "toggle" ), - fadeIn: { opacity: "show" }, - fadeOut: { opacity: "hide" }, - fadeToggle: { opacity: "toggle" } -}, function( name, props ) { - jQuery.fn[ name ] = function( speed, easing, callback ) { - return this.animate( props, speed, easing, callback ); - }; -} ); - -jQuery.timers = []; -jQuery.fx.tick = function() { - var timer, - i = 0, - timers = jQuery.timers; - - fxNow = jQuery.now(); - - for ( ; i < timers.length; i++ ) { - timer = timers[ i ]; - - // Run the timer and safely remove it when done (allowing for external removal) - if ( !timer() && timers[ i ] === timer ) { - timers.splice( i--, 1 ); - } - } - - if ( !timers.length ) { - jQuery.fx.stop(); - } - fxNow = undefined; -}; - -jQuery.fx.timer = function( timer ) { - jQuery.timers.push( timer ); - jQuery.fx.start(); -}; - -jQuery.fx.interval = 13; -jQuery.fx.start = function() { - if ( inProgress ) { - return; - } - - inProgress = true; - schedule(); -}; - -jQuery.fx.stop = function() { - inProgress = null; -}; - -jQuery.fx.speeds = { - slow: 600, - fast: 200, - - // Default speed - _default: 400 -}; - - -// Based off of the plugin by Clint Helfers, with permission. -// https://web.archive.org/web/20100324014747/http://blindsignals.com/index.php/2009/07/jquery-delay/ -jQuery.fn.delay = function( time, type ) { - time = jQuery.fx ? jQuery.fx.speeds[ time ] || time : time; - type = type || "fx"; - - return this.queue( type, function( next, hooks ) { - var timeout = window.setTimeout( next, time ); - hooks.stop = function() { - window.clearTimeout( timeout ); - }; - } ); -}; - - -( function() { - var input = document.createElement( "input" ), - select = document.createElement( "select" ), - opt = select.appendChild( document.createElement( "option" ) ); - - input.type = "checkbox"; - - // Support: Android <=4.3 only - // Default value for a checkbox should be "on" - support.checkOn = input.value !== ""; - - // Support: IE <=11 only - // Must access selectedIndex to make default options select - support.optSelected = opt.selected; - - // Support: IE <=11 only - // An input loses its value after becoming a radio - input = document.createElement( "input" ); - input.value = "t"; - input.type = "radio"; - support.radioValue = input.value === "t"; -} )(); - - -var boolHook, - attrHandle = jQuery.expr.attrHandle; - -jQuery.fn.extend( { - attr: function( name, value ) { - return access( this, jQuery.attr, name, value, arguments.length > 1 ); - }, - - removeAttr: function( name ) { - return this.each( function() { - jQuery.removeAttr( this, name ); - } ); - } -} ); - -jQuery.extend( { - attr: function( elem, name, value ) { - var ret, hooks, - nType = elem.nodeType; - - // Don't get/set attributes on text, comment and attribute nodes - if ( nType === 3 || nType === 8 || nType === 2 ) { - return; - } - - // Fallback to prop when attributes are not supported - if ( typeof elem.getAttribute === "undefined" ) { - return jQuery.prop( elem, name, value ); - } - - // Attribute hooks are determined by the lowercase version - // Grab necessary hook if one is defined - if ( nType !== 1 || !jQuery.isXMLDoc( elem ) ) { - hooks = jQuery.attrHooks[ name.toLowerCase() ] || - ( jQuery.expr.match.bool.test( name ) ? boolHook : undefined ); - } - - if ( value !== undefined ) { - if ( value === null ) { - jQuery.removeAttr( elem, name ); - return; - } - - if ( hooks && "set" in hooks && - ( ret = hooks.set( elem, value, name ) ) !== undefined ) { - return ret; - } - - elem.setAttribute( name, value + "" ); - return value; - } - - if ( hooks && "get" in hooks && ( ret = hooks.get( elem, name ) ) !== null ) { - return ret; - } - - ret = jQuery.find.attr( elem, name ); - - // Non-existent attributes return null, we normalize to undefined - return ret == null ? undefined : ret; - }, - - attrHooks: { - type: { - set: function( elem, value ) { - if ( !support.radioValue && value === "radio" && - nodeName( elem, "input" ) ) { - var val = elem.value; - elem.setAttribute( "type", value ); - if ( val ) { - elem.value = val; - } - return value; - } - } - } - }, - - removeAttr: function( elem, value ) { - var name, - i = 0, - - // Attribute names can contain non-HTML whitespace characters - // https://html.spec.whatwg.org/multipage/syntax.html#attributes-2 - attrNames = value && value.match( rnothtmlwhite ); - - if ( attrNames && elem.nodeType === 1 ) { - while ( ( name = attrNames[ i++ ] ) ) { - elem.removeAttribute( name ); - } - } - } -} ); - -// Hooks for boolean attributes -boolHook = { - set: function( elem, value, name ) { - if ( value === false ) { - - // Remove boolean attributes when set to false - jQuery.removeAttr( elem, name ); - } else { - elem.setAttribute( name, name ); - } - return name; - } -}; - -jQuery.each( jQuery.expr.match.bool.source.match( /\w+/g ), function( i, name ) { - var getter = attrHandle[ name ] || jQuery.find.attr; - - attrHandle[ name ] = function( elem, name, isXML ) { - var ret, handle, - lowercaseName = name.toLowerCase(); - - if ( !isXML ) { - - // Avoid an infinite loop by temporarily removing this function from the getter - handle = attrHandle[ lowercaseName ]; - attrHandle[ lowercaseName ] = ret; - ret = getter( elem, name, isXML ) != null ? - lowercaseName : - null; - attrHandle[ lowercaseName ] = handle; - } - return ret; - }; -} ); - - - - -var rfocusable = /^(?:input|select|textarea|button)$/i, - rclickable = /^(?:a|area)$/i; - -jQuery.fn.extend( { - prop: function( name, value ) { - return access( this, jQuery.prop, name, value, arguments.length > 1 ); - }, - - removeProp: function( name ) { - return this.each( function() { - delete this[ jQuery.propFix[ name ] || name ]; - } ); - } -} ); - -jQuery.extend( { - prop: function( elem, name, value ) { - var ret, hooks, - nType = elem.nodeType; - - // Don't get/set properties on text, comment and attribute nodes - if ( nType === 3 || nType === 8 || nType === 2 ) { - return; - } - - if ( nType !== 1 || !jQuery.isXMLDoc( elem ) ) { - - // Fix name and attach hooks - name = jQuery.propFix[ name ] || name; - hooks = jQuery.propHooks[ name ]; - } - - if ( value !== undefined ) { - if ( hooks && "set" in hooks && - ( ret = hooks.set( elem, value, name ) ) !== undefined ) { - return ret; - } - - return ( elem[ name ] = value ); - } - - if ( hooks && "get" in hooks && ( ret = hooks.get( elem, name ) ) !== null ) { - return ret; - } - - return elem[ name ]; - }, - - propHooks: { - tabIndex: { - get: function( elem ) { - - // Support: IE <=9 - 11 only - // elem.tabIndex doesn't always return the - // correct value when it hasn't been explicitly set - // https://web.archive.org/web/20141116233347/http://fluidproject.org/blog/2008/01/09/getting-setting-and-removing-tabindex-values-with-javascript/ - // Use proper attribute retrieval(#12072) - var tabindex = jQuery.find.attr( elem, "tabindex" ); - - if ( tabindex ) { - return parseInt( tabindex, 10 ); - } - - if ( - rfocusable.test( elem.nodeName ) || - rclickable.test( elem.nodeName ) && - elem.href - ) { - return 0; - } - - return -1; - } - } - }, - - propFix: { - "for": "htmlFor", - "class": "className" - } -} ); - -// Support: IE <=11 only -// Accessing the selectedIndex property -// forces the browser to respect setting selected -// on the option -// The getter ensures a default option is selected -// when in an optgroup -// eslint rule "no-unused-expressions" is disabled for this code -// since it considers such accessions noop -if ( !support.optSelected ) { - jQuery.propHooks.selected = { - get: function( elem ) { - - /* eslint no-unused-expressions: "off" */ - - var parent = elem.parentNode; - if ( parent && parent.parentNode ) { - parent.parentNode.selectedIndex; - } - return null; - }, - set: function( elem ) { - - /* eslint no-unused-expressions: "off" */ - - var parent = elem.parentNode; - if ( parent ) { - parent.selectedIndex; - - if ( parent.parentNode ) { - parent.parentNode.selectedIndex; - } - } - } - }; -} - -jQuery.each( [ - "tabIndex", - "readOnly", - "maxLength", - "cellSpacing", - "cellPadding", - "rowSpan", - "colSpan", - "useMap", - "frameBorder", - "contentEditable" -], function() { - jQuery.propFix[ this.toLowerCase() ] = this; -} ); - - - - - // Strip and collapse whitespace according to HTML spec - // https://html.spec.whatwg.org/multipage/infrastructure.html#strip-and-collapse-whitespace - function stripAndCollapse( value ) { - var tokens = value.match( rnothtmlwhite ) || []; - return tokens.join( " " ); - } - - -function getClass( elem ) { - return elem.getAttribute && elem.getAttribute( "class" ) || ""; -} - -jQuery.fn.extend( { - addClass: function( value ) { - var classes, elem, cur, curValue, clazz, j, finalValue, - i = 0; - - if ( jQuery.isFunction( value ) ) { - return this.each( function( j ) { - jQuery( this ).addClass( value.call( this, j, getClass( this ) ) ); - } ); - } - - if ( typeof value === "string" && value ) { - classes = value.match( rnothtmlwhite ) || []; - - while ( ( elem = this[ i++ ] ) ) { - curValue = getClass( elem ); - cur = elem.nodeType === 1 && ( " " + stripAndCollapse( curValue ) + " " ); - - if ( cur ) { - j = 0; - while ( ( clazz = classes[ j++ ] ) ) { - if ( cur.indexOf( " " + clazz + " " ) < 0 ) { - cur += clazz + " "; - } - } - - // Only assign if different to avoid unneeded rendering. - finalValue = stripAndCollapse( cur ); - if ( curValue !== finalValue ) { - elem.setAttribute( "class", finalValue ); - } - } - } - } - - return this; - }, - - removeClass: function( value ) { - var classes, elem, cur, curValue, clazz, j, finalValue, - i = 0; - - if ( jQuery.isFunction( value ) ) { - return this.each( function( j ) { - jQuery( this ).removeClass( value.call( this, j, getClass( this ) ) ); - } ); - } - - if ( !arguments.length ) { - return this.attr( "class", "" ); - } - - if ( typeof value === "string" && value ) { - classes = value.match( rnothtmlwhite ) || []; - - while ( ( elem = this[ i++ ] ) ) { - curValue = getClass( elem ); - - // This expression is here for better compressibility (see addClass) - cur = elem.nodeType === 1 && ( " " + stripAndCollapse( curValue ) + " " ); - - if ( cur ) { - j = 0; - while ( ( clazz = classes[ j++ ] ) ) { - - // Remove *all* instances - while ( cur.indexOf( " " + clazz + " " ) > -1 ) { - cur = cur.replace( " " + clazz + " ", " " ); - } - } - - // Only assign if different to avoid unneeded rendering. - finalValue = stripAndCollapse( cur ); - if ( curValue !== finalValue ) { - elem.setAttribute( "class", finalValue ); - } - } - } - } - - return this; - }, - - toggleClass: function( value, stateVal ) { - var type = typeof value; - - if ( typeof stateVal === "boolean" && type === "string" ) { - return stateVal ? this.addClass( value ) : this.removeClass( value ); - } - - if ( jQuery.isFunction( value ) ) { - return this.each( function( i ) { - jQuery( this ).toggleClass( - value.call( this, i, getClass( this ), stateVal ), - stateVal - ); - } ); - } - - return this.each( function() { - var className, i, self, classNames; - - if ( type === "string" ) { - - // Toggle individual class names - i = 0; - self = jQuery( this ); - classNames = value.match( rnothtmlwhite ) || []; - - while ( ( className = classNames[ i++ ] ) ) { - - // Check each className given, space separated list - if ( self.hasClass( className ) ) { - self.removeClass( className ); - } else { - self.addClass( className ); - } - } - - // Toggle whole class name - } else if ( value === undefined || type === "boolean" ) { - className = getClass( this ); - if ( className ) { - - // Store className if set - dataPriv.set( this, "__className__", className ); - } - - // If the element has a class name or if we're passed `false`, - // then remove the whole classname (if there was one, the above saved it). - // Otherwise bring back whatever was previously saved (if anything), - // falling back to the empty string if nothing was stored. - if ( this.setAttribute ) { - this.setAttribute( "class", - className || value === false ? - "" : - dataPriv.get( this, "__className__" ) || "" - ); - } - } - } ); - }, - - hasClass: function( selector ) { - var className, elem, - i = 0; - - className = " " + selector + " "; - while ( ( elem = this[ i++ ] ) ) { - if ( elem.nodeType === 1 && - ( " " + stripAndCollapse( getClass( elem ) ) + " " ).indexOf( className ) > -1 ) { - return true; - } - } - - return false; - } -} ); - - - - -var rreturn = /\r/g; - -jQuery.fn.extend( { - val: function( value ) { - var hooks, ret, isFunction, - elem = this[ 0 ]; - - if ( !arguments.length ) { - if ( elem ) { - hooks = jQuery.valHooks[ elem.type ] || - jQuery.valHooks[ elem.nodeName.toLowerCase() ]; - - if ( hooks && - "get" in hooks && - ( ret = hooks.get( elem, "value" ) ) !== undefined - ) { - return ret; - } - - ret = elem.value; - - // Handle most common string cases - if ( typeof ret === "string" ) { - return ret.replace( rreturn, "" ); - } - - // Handle cases where value is null/undef or number - return ret == null ? "" : ret; - } - - return; - } - - isFunction = jQuery.isFunction( value ); - - return this.each( function( i ) { - var val; - - if ( this.nodeType !== 1 ) { - return; - } - - if ( isFunction ) { - val = value.call( this, i, jQuery( this ).val() ); - } else { - val = value; - } - - // Treat null/undefined as ""; convert numbers to string - if ( val == null ) { - val = ""; - - } else if ( typeof val === "number" ) { - val += ""; - - } else if ( Array.isArray( val ) ) { - val = jQuery.map( val, function( value ) { - return value == null ? "" : value + ""; - } ); - } - - hooks = jQuery.valHooks[ this.type ] || jQuery.valHooks[ this.nodeName.toLowerCase() ]; - - // If set returns undefined, fall back to normal setting - if ( !hooks || !( "set" in hooks ) || hooks.set( this, val, "value" ) === undefined ) { - this.value = val; - } - } ); - } -} ); - -jQuery.extend( { - valHooks: { - option: { - get: function( elem ) { - - var val = jQuery.find.attr( elem, "value" ); - return val != null ? - val : - - // Support: IE <=10 - 11 only - // option.text throws exceptions (#14686, #14858) - // Strip and collapse whitespace - // https://html.spec.whatwg.org/#strip-and-collapse-whitespace - stripAndCollapse( jQuery.text( elem ) ); - } - }, - select: { - get: function( elem ) { - var value, option, i, - options = elem.options, - index = elem.selectedIndex, - one = elem.type === "select-one", - values = one ? null : [], - max = one ? index + 1 : options.length; - - if ( index < 0 ) { - i = max; - - } else { - i = one ? index : 0; - } - - // Loop through all the selected options - for ( ; i < max; i++ ) { - option = options[ i ]; - - // Support: IE <=9 only - // IE8-9 doesn't update selected after form reset (#2551) - if ( ( option.selected || i === index ) && - - // Don't return options that are disabled or in a disabled optgroup - !option.disabled && - ( !option.parentNode.disabled || - !nodeName( option.parentNode, "optgroup" ) ) ) { - - // Get the specific value for the option - value = jQuery( option ).val(); - - // We don't need an array for one selects - if ( one ) { - return value; - } - - // Multi-Selects return an array - values.push( value ); - } - } - - return values; - }, - - set: function( elem, value ) { - var optionSet, option, - options = elem.options, - values = jQuery.makeArray( value ), - i = options.length; - - while ( i-- ) { - option = options[ i ]; - - /* eslint-disable no-cond-assign */ - - if ( option.selected = - jQuery.inArray( jQuery.valHooks.option.get( option ), values ) > -1 - ) { - optionSet = true; - } - - /* eslint-enable no-cond-assign */ - } - - // Force browsers to behave consistently when non-matching value is set - if ( !optionSet ) { - elem.selectedIndex = -1; - } - return values; - } - } - } -} ); - -// Radios and checkboxes getter/setter -jQuery.each( [ "radio", "checkbox" ], function() { - jQuery.valHooks[ this ] = { - set: function( elem, value ) { - if ( Array.isArray( value ) ) { - return ( elem.checked = jQuery.inArray( jQuery( elem ).val(), value ) > -1 ); - } - } - }; - if ( !support.checkOn ) { - jQuery.valHooks[ this ].get = function( elem ) { - return elem.getAttribute( "value" ) === null ? "on" : elem.value; - }; - } -} ); - - - - -// Return jQuery for attributes-only inclusion - - -var rfocusMorph = /^(?:focusinfocus|focusoutblur)$/; - -jQuery.extend( jQuery.event, { - - trigger: function( event, data, elem, onlyHandlers ) { - - var i, cur, tmp, bubbleType, ontype, handle, special, - eventPath = [ elem || document ], - type = hasOwn.call( event, "type" ) ? event.type : event, - namespaces = hasOwn.call( event, "namespace" ) ? event.namespace.split( "." ) : []; - - cur = tmp = elem = elem || document; - - // Don't do events on text and comment nodes - if ( elem.nodeType === 3 || elem.nodeType === 8 ) { - return; - } - - // focus/blur morphs to focusin/out; ensure we're not firing them right now - if ( rfocusMorph.test( type + jQuery.event.triggered ) ) { - return; - } - - if ( type.indexOf( "." ) > -1 ) { - - // Namespaced trigger; create a regexp to match event type in handle() - namespaces = type.split( "." ); - type = namespaces.shift(); - namespaces.sort(); - } - ontype = type.indexOf( ":" ) < 0 && "on" + type; - - // Caller can pass in a jQuery.Event object, Object, or just an event type string - event = event[ jQuery.expando ] ? - event : - new jQuery.Event( type, typeof event === "object" && event ); - - // Trigger bitmask: & 1 for native handlers; & 2 for jQuery (always true) - event.isTrigger = onlyHandlers ? 2 : 3; - event.namespace = namespaces.join( "." ); - event.rnamespace = event.namespace ? - new RegExp( "(^|\\.)" + namespaces.join( "\\.(?:.*\\.|)" ) + "(\\.|$)" ) : - null; - - // Clean up the event in case it is being reused - event.result = undefined; - if ( !event.target ) { - event.target = elem; - } - - // Clone any incoming data and prepend the event, creating the handler arg list - data = data == null ? - [ event ] : - jQuery.makeArray( data, [ event ] ); - - // Allow special events to draw outside the lines - special = jQuery.event.special[ type ] || {}; - if ( !onlyHandlers && special.trigger && special.trigger.apply( elem, data ) === false ) { - return; - } - - // Determine event propagation path in advance, per W3C events spec (#9951) - // Bubble up to document, then to window; watch for a global ownerDocument var (#9724) - if ( !onlyHandlers && !special.noBubble && !jQuery.isWindow( elem ) ) { - - bubbleType = special.delegateType || type; - if ( !rfocusMorph.test( bubbleType + type ) ) { - cur = cur.parentNode; - } - for ( ; cur; cur = cur.parentNode ) { - eventPath.push( cur ); - tmp = cur; - } - - // Only add window if we got to document (e.g., not plain obj or detached DOM) - if ( tmp === ( elem.ownerDocument || document ) ) { - eventPath.push( tmp.defaultView || tmp.parentWindow || window ); - } - } - - // Fire handlers on the event path - i = 0; - while ( ( cur = eventPath[ i++ ] ) && !event.isPropagationStopped() ) { - - event.type = i > 1 ? - bubbleType : - special.bindType || type; - - // jQuery handler - handle = ( dataPriv.get( cur, "events" ) || {} )[ event.type ] && - dataPriv.get( cur, "handle" ); - if ( handle ) { - handle.apply( cur, data ); - } - - // Native handler - handle = ontype && cur[ ontype ]; - if ( handle && handle.apply && acceptData( cur ) ) { - event.result = handle.apply( cur, data ); - if ( event.result === false ) { - event.preventDefault(); - } - } - } - event.type = type; - - // If nobody prevented the default action, do it now - if ( !onlyHandlers && !event.isDefaultPrevented() ) { - - if ( ( !special._default || - special._default.apply( eventPath.pop(), data ) === false ) && - acceptData( elem ) ) { - - // Call a native DOM method on the target with the same name as the event. - // Don't do default actions on window, that's where global variables be (#6170) - if ( ontype && jQuery.isFunction( elem[ type ] ) && !jQuery.isWindow( elem ) ) { - - // Don't re-trigger an onFOO event when we call its FOO() method - tmp = elem[ ontype ]; - - if ( tmp ) { - elem[ ontype ] = null; - } - - // Prevent re-triggering of the same event, since we already bubbled it above - jQuery.event.triggered = type; - elem[ type ](); - jQuery.event.triggered = undefined; - - if ( tmp ) { - elem[ ontype ] = tmp; - } - } - } - } - - return event.result; - }, - - // Piggyback on a donor event to simulate a different one - // Used only for `focus(in | out)` events - simulate: function( type, elem, event ) { - var e = jQuery.extend( - new jQuery.Event(), - event, - { - type: type, - isSimulated: true - } - ); - - jQuery.event.trigger( e, null, elem ); - } - -} ); - -jQuery.fn.extend( { - - trigger: function( type, data ) { - return this.each( function() { - jQuery.event.trigger( type, data, this ); - } ); - }, - triggerHandler: function( type, data ) { - var elem = this[ 0 ]; - if ( elem ) { - return jQuery.event.trigger( type, data, elem, true ); - } - } -} ); - - -jQuery.each( ( "blur focus focusin focusout resize scroll click dblclick " + - "mousedown mouseup mousemove mouseover mouseout mouseenter mouseleave " + - "change select submit keydown keypress keyup contextmenu" ).split( " " ), - function( i, name ) { - - // Handle event binding - jQuery.fn[ name ] = function( data, fn ) { - return arguments.length > 0 ? - this.on( name, null, data, fn ) : - this.trigger( name ); - }; -} ); - -jQuery.fn.extend( { - hover: function( fnOver, fnOut ) { - return this.mouseenter( fnOver ).mouseleave( fnOut || fnOver ); - } -} ); - - - - -support.focusin = "onfocusin" in window; - - -// Support: Firefox <=44 -// Firefox doesn't have focus(in | out) events -// Related ticket - https://bugzilla.mozilla.org/show_bug.cgi?id=687787 -// -// Support: Chrome <=48 - 49, Safari <=9.0 - 9.1 -// focus(in | out) events fire after focus & blur events, -// which is spec violation - http://www.w3.org/TR/DOM-Level-3-Events/#events-focusevent-event-order -// Related ticket - https://bugs.chromium.org/p/chromium/issues/detail?id=449857 -if ( !support.focusin ) { - jQuery.each( { focus: "focusin", blur: "focusout" }, function( orig, fix ) { - - // Attach a single capturing handler on the document while someone wants focusin/focusout - var handler = function( event ) { - jQuery.event.simulate( fix, event.target, jQuery.event.fix( event ) ); - }; - - jQuery.event.special[ fix ] = { - setup: function() { - var doc = this.ownerDocument || this, - attaches = dataPriv.access( doc, fix ); - - if ( !attaches ) { - doc.addEventListener( orig, handler, true ); - } - dataPriv.access( doc, fix, ( attaches || 0 ) + 1 ); - }, - teardown: function() { - var doc = this.ownerDocument || this, - attaches = dataPriv.access( doc, fix ) - 1; - - if ( !attaches ) { - doc.removeEventListener( orig, handler, true ); - dataPriv.remove( doc, fix ); - - } else { - dataPriv.access( doc, fix, attaches ); - } - } - }; - } ); -} -var location = window.location; - -var nonce = jQuery.now(); - -var rquery = ( /\?/ ); - - - -// Cross-browser xml parsing -jQuery.parseXML = function( data ) { - var xml; - if ( !data || typeof data !== "string" ) { - return null; - } - - // Support: IE 9 - 11 only - // IE throws on parseFromString with invalid input. - try { - xml = ( new window.DOMParser() ).parseFromString( data, "text/xml" ); - } catch ( e ) { - xml = undefined; - } - - if ( !xml || xml.getElementsByTagName( "parsererror" ).length ) { - jQuery.error( "Invalid XML: " + data ); - } - return xml; -}; - - -var - rbracket = /\[\]$/, - rCRLF = /\r?\n/g, - rsubmitterTypes = /^(?:submit|button|image|reset|file)$/i, - rsubmittable = /^(?:input|select|textarea|keygen)/i; - -function buildParams( prefix, obj, traditional, add ) { - var name; - - if ( Array.isArray( obj ) ) { - - // Serialize array item. - jQuery.each( obj, function( i, v ) { - if ( traditional || rbracket.test( prefix ) ) { - - // Treat each array item as a scalar. - add( prefix, v ); - - } else { - - // Item is non-scalar (array or object), encode its numeric index. - buildParams( - prefix + "[" + ( typeof v === "object" && v != null ? i : "" ) + "]", - v, - traditional, - add - ); - } - } ); - - } else if ( !traditional && jQuery.type( obj ) === "object" ) { - - // Serialize object item. - for ( name in obj ) { - buildParams( prefix + "[" + name + "]", obj[ name ], traditional, add ); - } - - } else { - - // Serialize scalar item. - add( prefix, obj ); - } -} - -// Serialize an array of form elements or a set of -// key/values into a query string -jQuery.param = function( a, traditional ) { - var prefix, - s = [], - add = function( key, valueOrFunction ) { - - // If value is a function, invoke it and use its return value - var value = jQuery.isFunction( valueOrFunction ) ? - valueOrFunction() : - valueOrFunction; - - s[ s.length ] = encodeURIComponent( key ) + "=" + - encodeURIComponent( value == null ? "" : value ); - }; - - // If an array was passed in, assume that it is an array of form elements. - if ( Array.isArray( a ) || ( a.jquery && !jQuery.isPlainObject( a ) ) ) { - - // Serialize the form elements - jQuery.each( a, function() { - add( this.name, this.value ); - } ); - - } else { - - // If traditional, encode the "old" way (the way 1.3.2 or older - // did it), otherwise encode params recursively. - for ( prefix in a ) { - buildParams( prefix, a[ prefix ], traditional, add ); - } - } - - // Return the resulting serialization - return s.join( "&" ); -}; - -jQuery.fn.extend( { - serialize: function() { - return jQuery.param( this.serializeArray() ); - }, - serializeArray: function() { - return this.map( function() { - - // Can add propHook for "elements" to filter or add form elements - var elements = jQuery.prop( this, "elements" ); - return elements ? jQuery.makeArray( elements ) : this; - } ) - .filter( function() { - var type = this.type; - - // Use .is( ":disabled" ) so that fieldset[disabled] works - return this.name && !jQuery( this ).is( ":disabled" ) && - rsubmittable.test( this.nodeName ) && !rsubmitterTypes.test( type ) && - ( this.checked || !rcheckableType.test( type ) ); - } ) - .map( function( i, elem ) { - var val = jQuery( this ).val(); - - if ( val == null ) { - return null; - } - - if ( Array.isArray( val ) ) { - return jQuery.map( val, function( val ) { - return { name: elem.name, value: val.replace( rCRLF, "\r\n" ) }; - } ); - } - - return { name: elem.name, value: val.replace( rCRLF, "\r\n" ) }; - } ).get(); - } -} ); - - -var - r20 = /%20/g, - rhash = /#.*$/, - rantiCache = /([?&])_=[^&]*/, - rheaders = /^(.*?):[ \t]*([^\r\n]*)$/mg, - - // #7653, #8125, #8152: local protocol detection - rlocalProtocol = /^(?:about|app|app-storage|.+-extension|file|res|widget):$/, - rnoContent = /^(?:GET|HEAD)$/, - rprotocol = /^\/\//, - - /* Prefilters - * 1) They are useful to introduce custom dataTypes (see ajax/jsonp.js for an example) - * 2) These are called: - * - BEFORE asking for a transport - * - AFTER param serialization (s.data is a string if s.processData is true) - * 3) key is the dataType - * 4) the catchall symbol "*" can be used - * 5) execution will start with transport dataType and THEN continue down to "*" if needed - */ - prefilters = {}, - - /* Transports bindings - * 1) key is the dataType - * 2) the catchall symbol "*" can be used - * 3) selection will start with transport dataType and THEN go to "*" if needed - */ - transports = {}, - - // Avoid comment-prolog char sequence (#10098); must appease lint and evade compression - allTypes = "*/".concat( "*" ), - - // Anchor tag for parsing the document origin - originAnchor = document.createElement( "a" ); - originAnchor.href = location.href; - -// Base "constructor" for jQuery.ajaxPrefilter and jQuery.ajaxTransport -function addToPrefiltersOrTransports( structure ) { - - // dataTypeExpression is optional and defaults to "*" - return function( dataTypeExpression, func ) { - - if ( typeof dataTypeExpression !== "string" ) { - func = dataTypeExpression; - dataTypeExpression = "*"; - } - - var dataType, - i = 0, - dataTypes = dataTypeExpression.toLowerCase().match( rnothtmlwhite ) || []; - - if ( jQuery.isFunction( func ) ) { - - // For each dataType in the dataTypeExpression - while ( ( dataType = dataTypes[ i++ ] ) ) { - - // Prepend if requested - if ( dataType[ 0 ] === "+" ) { - dataType = dataType.slice( 1 ) || "*"; - ( structure[ dataType ] = structure[ dataType ] || [] ).unshift( func ); - - // Otherwise append - } else { - ( structure[ dataType ] = structure[ dataType ] || [] ).push( func ); - } - } - } - }; -} - -// Base inspection function for prefilters and transports -function inspectPrefiltersOrTransports( structure, options, originalOptions, jqXHR ) { - - var inspected = {}, - seekingTransport = ( structure === transports ); - - function inspect( dataType ) { - var selected; - inspected[ dataType ] = true; - jQuery.each( structure[ dataType ] || [], function( _, prefilterOrFactory ) { - var dataTypeOrTransport = prefilterOrFactory( options, originalOptions, jqXHR ); - if ( typeof dataTypeOrTransport === "string" && - !seekingTransport && !inspected[ dataTypeOrTransport ] ) { - - options.dataTypes.unshift( dataTypeOrTransport ); - inspect( dataTypeOrTransport ); - return false; - } else if ( seekingTransport ) { - return !( selected = dataTypeOrTransport ); - } - } ); - return selected; - } - - return inspect( options.dataTypes[ 0 ] ) || !inspected[ "*" ] && inspect( "*" ); -} - -// A special extend for ajax options -// that takes "flat" options (not to be deep extended) -// Fixes #9887 -function ajaxExtend( target, src ) { - var key, deep, - flatOptions = jQuery.ajaxSettings.flatOptions || {}; - - for ( key in src ) { - if ( src[ key ] !== undefined ) { - ( flatOptions[ key ] ? target : ( deep || ( deep = {} ) ) )[ key ] = src[ key ]; - } - } - if ( deep ) { - jQuery.extend( true, target, deep ); - } - - return target; -} - -/* Handles responses to an ajax request: - * - finds the right dataType (mediates between content-type and expected dataType) - * - returns the corresponding response - */ -function ajaxHandleResponses( s, jqXHR, responses ) { - - var ct, type, finalDataType, firstDataType, - contents = s.contents, - dataTypes = s.dataTypes; - - // Remove auto dataType and get content-type in the process - while ( dataTypes[ 0 ] === "*" ) { - dataTypes.shift(); - if ( ct === undefined ) { - ct = s.mimeType || jqXHR.getResponseHeader( "Content-Type" ); - } - } - - // Check if we're dealing with a known content-type - if ( ct ) { - for ( type in contents ) { - if ( contents[ type ] && contents[ type ].test( ct ) ) { - dataTypes.unshift( type ); - break; - } - } - } - - // Check to see if we have a response for the expected dataType - if ( dataTypes[ 0 ] in responses ) { - finalDataType = dataTypes[ 0 ]; - } else { - - // Try convertible dataTypes - for ( type in responses ) { - if ( !dataTypes[ 0 ] || s.converters[ type + " " + dataTypes[ 0 ] ] ) { - finalDataType = type; - break; - } - if ( !firstDataType ) { - firstDataType = type; - } - } - - // Or just use first one - finalDataType = finalDataType || firstDataType; - } - - // If we found a dataType - // We add the dataType to the list if needed - // and return the corresponding response - if ( finalDataType ) { - if ( finalDataType !== dataTypes[ 0 ] ) { - dataTypes.unshift( finalDataType ); - } - return responses[ finalDataType ]; - } -} - -/* Chain conversions given the request and the original response - * Also sets the responseXXX fields on the jqXHR instance - */ -function ajaxConvert( s, response, jqXHR, isSuccess ) { - var conv2, current, conv, tmp, prev, - converters = {}, - - // Work with a copy of dataTypes in case we need to modify it for conversion - dataTypes = s.dataTypes.slice(); - - // Create converters map with lowercased keys - if ( dataTypes[ 1 ] ) { - for ( conv in s.converters ) { - converters[ conv.toLowerCase() ] = s.converters[ conv ]; - } - } - - current = dataTypes.shift(); - - // Convert to each sequential dataType - while ( current ) { - - if ( s.responseFields[ current ] ) { - jqXHR[ s.responseFields[ current ] ] = response; - } - - // Apply the dataFilter if provided - if ( !prev && isSuccess && s.dataFilter ) { - response = s.dataFilter( response, s.dataType ); - } - - prev = current; - current = dataTypes.shift(); - - if ( current ) { - - // There's only work to do if current dataType is non-auto - if ( current === "*" ) { - - current = prev; - - // Convert response if prev dataType is non-auto and differs from current - } else if ( prev !== "*" && prev !== current ) { - - // Seek a direct converter - conv = converters[ prev + " " + current ] || converters[ "* " + current ]; - - // If none found, seek a pair - if ( !conv ) { - for ( conv2 in converters ) { - - // If conv2 outputs current - tmp = conv2.split( " " ); - if ( tmp[ 1 ] === current ) { - - // If prev can be converted to accepted input - conv = converters[ prev + " " + tmp[ 0 ] ] || - converters[ "* " + tmp[ 0 ] ]; - if ( conv ) { - - // Condense equivalence converters - if ( conv === true ) { - conv = converters[ conv2 ]; - - // Otherwise, insert the intermediate dataType - } else if ( converters[ conv2 ] !== true ) { - current = tmp[ 0 ]; - dataTypes.unshift( tmp[ 1 ] ); - } - break; - } - } - } - } - - // Apply converter (if not an equivalence) - if ( conv !== true ) { - - // Unless errors are allowed to bubble, catch and return them - if ( conv && s.throws ) { - response = conv( response ); - } else { - try { - response = conv( response ); - } catch ( e ) { - return { - state: "parsererror", - error: conv ? e : "No conversion from " + prev + " to " + current - }; - } - } - } - } - } - } - - return { state: "success", data: response }; -} - -jQuery.extend( { - - // Counter for holding the number of active queries - active: 0, - - // Last-Modified header cache for next request - lastModified: {}, - etag: {}, - - ajaxSettings: { - url: location.href, - type: "GET", - isLocal: rlocalProtocol.test( location.protocol ), - global: true, - processData: true, - async: true, - contentType: "application/x-www-form-urlencoded; charset=UTF-8", - - /* - timeout: 0, - data: null, - dataType: null, - username: null, - password: null, - cache: null, - throws: false, - traditional: false, - headers: {}, - */ - - accepts: { - "*": allTypes, - text: "text/plain", - html: "text/html", - xml: "application/xml, text/xml", - json: "application/json, text/javascript" - }, - - contents: { - xml: /\bxml\b/, - html: /\bhtml/, - json: /\bjson\b/ - }, - - responseFields: { - xml: "responseXML", - text: "responseText", - json: "responseJSON" - }, - - // Data converters - // Keys separate source (or catchall "*") and destination types with a single space - converters: { - - // Convert anything to text - "* text": String, - - // Text to html (true = no transformation) - "text html": true, - - // Evaluate text as a json expression - "text json": JSON.parse, - - // Parse text as xml - "text xml": jQuery.parseXML - }, - - // For options that shouldn't be deep extended: - // you can add your own custom options here if - // and when you create one that shouldn't be - // deep extended (see ajaxExtend) - flatOptions: { - url: true, - context: true - } - }, - - // Creates a full fledged settings object into target - // with both ajaxSettings and settings fields. - // If target is omitted, writes into ajaxSettings. - ajaxSetup: function( target, settings ) { - return settings ? - - // Building a settings object - ajaxExtend( ajaxExtend( target, jQuery.ajaxSettings ), settings ) : - - // Extending ajaxSettings - ajaxExtend( jQuery.ajaxSettings, target ); - }, - - ajaxPrefilter: addToPrefiltersOrTransports( prefilters ), - ajaxTransport: addToPrefiltersOrTransports( transports ), - - // Main method - ajax: function( url, options ) { - - // If url is an object, simulate pre-1.5 signature - if ( typeof url === "object" ) { - options = url; - url = undefined; - } - - // Force options to be an object - options = options || {}; - - var transport, - - // URL without anti-cache param - cacheURL, - - // Response headers - responseHeadersString, - responseHeaders, - - // timeout handle - timeoutTimer, - - // Url cleanup var - urlAnchor, - - // Request state (becomes false upon send and true upon completion) - completed, - - // To know if global events are to be dispatched - fireGlobals, - - // Loop variable - i, - - // uncached part of the url - uncached, - - // Create the final options object - s = jQuery.ajaxSetup( {}, options ), - - // Callbacks context - callbackContext = s.context || s, - - // Context for global events is callbackContext if it is a DOM node or jQuery collection - globalEventContext = s.context && - ( callbackContext.nodeType || callbackContext.jquery ) ? - jQuery( callbackContext ) : - jQuery.event, - - // Deferreds - deferred = jQuery.Deferred(), - completeDeferred = jQuery.Callbacks( "once memory" ), - - // Status-dependent callbacks - statusCode = s.statusCode || {}, - - // Headers (they are sent all at once) - requestHeaders = {}, - requestHeadersNames = {}, - - // Default abort message - strAbort = "canceled", - - // Fake xhr - jqXHR = { - readyState: 0, - - // Builds headers hashtable if needed - getResponseHeader: function( key ) { - var match; - if ( completed ) { - if ( !responseHeaders ) { - responseHeaders = {}; - while ( ( match = rheaders.exec( responseHeadersString ) ) ) { - responseHeaders[ match[ 1 ].toLowerCase() ] = match[ 2 ]; - } - } - match = responseHeaders[ key.toLowerCase() ]; - } - return match == null ? null : match; - }, - - // Raw string - getAllResponseHeaders: function() { - return completed ? responseHeadersString : null; - }, - - // Caches the header - setRequestHeader: function( name, value ) { - if ( completed == null ) { - name = requestHeadersNames[ name.toLowerCase() ] = - requestHeadersNames[ name.toLowerCase() ] || name; - requestHeaders[ name ] = value; - } - return this; - }, - - // Overrides response content-type header - overrideMimeType: function( type ) { - if ( completed == null ) { - s.mimeType = type; - } - return this; - }, - - // Status-dependent callbacks - statusCode: function( map ) { - var code; - if ( map ) { - if ( completed ) { - - // Execute the appropriate callbacks - jqXHR.always( map[ jqXHR.status ] ); - } else { - - // Lazy-add the new callbacks in a way that preserves old ones - for ( code in map ) { - statusCode[ code ] = [ statusCode[ code ], map[ code ] ]; - } - } - } - return this; - }, - - // Cancel the request - abort: function( statusText ) { - var finalText = statusText || strAbort; - if ( transport ) { - transport.abort( finalText ); - } - done( 0, finalText ); - return this; - } - }; - - // Attach deferreds - deferred.promise( jqXHR ); - - // Add protocol if not provided (prefilters might expect it) - // Handle falsy url in the settings object (#10093: consistency with old signature) - // We also use the url parameter if available - s.url = ( ( url || s.url || location.href ) + "" ) - .replace( rprotocol, location.protocol + "//" ); - - // Alias method option to type as per ticket #12004 - s.type = options.method || options.type || s.method || s.type; - - // Extract dataTypes list - s.dataTypes = ( s.dataType || "*" ).toLowerCase().match( rnothtmlwhite ) || [ "" ]; - - // A cross-domain request is in order when the origin doesn't match the current origin. - if ( s.crossDomain == null ) { - urlAnchor = document.createElement( "a" ); - - // Support: IE <=8 - 11, Edge 12 - 13 - // IE throws exception on accessing the href property if url is malformed, - // e.g. http://example.com:80x/ - try { - urlAnchor.href = s.url; - - // Support: IE <=8 - 11 only - // Anchor's host property isn't correctly set when s.url is relative - urlAnchor.href = urlAnchor.href; - s.crossDomain = originAnchor.protocol + "//" + originAnchor.host !== - urlAnchor.protocol + "//" + urlAnchor.host; - } catch ( e ) { - - // If there is an error parsing the URL, assume it is crossDomain, - // it can be rejected by the transport if it is invalid - s.crossDomain = true; - } - } - - // Convert data if not already a string - if ( s.data && s.processData && typeof s.data !== "string" ) { - s.data = jQuery.param( s.data, s.traditional ); - } - - // Apply prefilters - inspectPrefiltersOrTransports( prefilters, s, options, jqXHR ); - - // If request was aborted inside a prefilter, stop there - if ( completed ) { - return jqXHR; - } - - // We can fire global events as of now if asked to - // Don't fire events if jQuery.event is undefined in an AMD-usage scenario (#15118) - fireGlobals = jQuery.event && s.global; - - // Watch for a new set of requests - if ( fireGlobals && jQuery.active++ === 0 ) { - jQuery.event.trigger( "ajaxStart" ); - } - - // Uppercase the type - s.type = s.type.toUpperCase(); - - // Determine if request has content - s.hasContent = !rnoContent.test( s.type ); - - // Save the URL in case we're toying with the If-Modified-Since - // and/or If-None-Match header later on - // Remove hash to simplify url manipulation - cacheURL = s.url.replace( rhash, "" ); - - // More options handling for requests with no content - if ( !s.hasContent ) { - - // Remember the hash so we can put it back - uncached = s.url.slice( cacheURL.length ); - - // If data is available, append data to url - if ( s.data ) { - cacheURL += ( rquery.test( cacheURL ) ? "&" : "?" ) + s.data; - - // #9682: remove data so that it's not used in an eventual retry - delete s.data; - } - - // Add or update anti-cache param if needed - if ( s.cache === false ) { - cacheURL = cacheURL.replace( rantiCache, "$1" ); - uncached = ( rquery.test( cacheURL ) ? "&" : "?" ) + "_=" + ( nonce++ ) + uncached; - } - - // Put hash and anti-cache on the URL that will be requested (gh-1732) - s.url = cacheURL + uncached; - - // Change '%20' to '+' if this is encoded form body content (gh-2658) - } else if ( s.data && s.processData && - ( s.contentType || "" ).indexOf( "application/x-www-form-urlencoded" ) === 0 ) { - s.data = s.data.replace( r20, "+" ); - } - - // Set the If-Modified-Since and/or If-None-Match header, if in ifModified mode. - if ( s.ifModified ) { - if ( jQuery.lastModified[ cacheURL ] ) { - jqXHR.setRequestHeader( "If-Modified-Since", jQuery.lastModified[ cacheURL ] ); - } - if ( jQuery.etag[ cacheURL ] ) { - jqXHR.setRequestHeader( "If-None-Match", jQuery.etag[ cacheURL ] ); - } - } - - // Set the correct header, if data is being sent - if ( s.data && s.hasContent && s.contentType !== false || options.contentType ) { - jqXHR.setRequestHeader( "Content-Type", s.contentType ); - } - - // Set the Accepts header for the server, depending on the dataType - jqXHR.setRequestHeader( - "Accept", - s.dataTypes[ 0 ] && s.accepts[ s.dataTypes[ 0 ] ] ? - s.accepts[ s.dataTypes[ 0 ] ] + - ( s.dataTypes[ 0 ] !== "*" ? ", " + allTypes + "; q=0.01" : "" ) : - s.accepts[ "*" ] - ); - - // Check for headers option - for ( i in s.headers ) { - jqXHR.setRequestHeader( i, s.headers[ i ] ); - } - - // Allow custom headers/mimetypes and early abort - if ( s.beforeSend && - ( s.beforeSend.call( callbackContext, jqXHR, s ) === false || completed ) ) { - - // Abort if not done already and return - return jqXHR.abort(); - } - - // Aborting is no longer a cancellation - strAbort = "abort"; - - // Install callbacks on deferreds - completeDeferred.add( s.complete ); - jqXHR.done( s.success ); - jqXHR.fail( s.error ); - - // Get transport - transport = inspectPrefiltersOrTransports( transports, s, options, jqXHR ); - - // If no transport, we auto-abort - if ( !transport ) { - done( -1, "No Transport" ); - } else { - jqXHR.readyState = 1; - - // Send global event - if ( fireGlobals ) { - globalEventContext.trigger( "ajaxSend", [ jqXHR, s ] ); - } - - // If request was aborted inside ajaxSend, stop there - if ( completed ) { - return jqXHR; - } - - // Timeout - if ( s.async && s.timeout > 0 ) { - timeoutTimer = window.setTimeout( function() { - jqXHR.abort( "timeout" ); - }, s.timeout ); - } - - try { - completed = false; - transport.send( requestHeaders, done ); - } catch ( e ) { - - // Rethrow post-completion exceptions - if ( completed ) { - throw e; - } - - // Propagate others as results - done( -1, e ); - } - } - - // Callback for when everything is done - function done( status, nativeStatusText, responses, headers ) { - var isSuccess, success, error, response, modified, - statusText = nativeStatusText; - - // Ignore repeat invocations - if ( completed ) { - return; - } - - completed = true; - - // Clear timeout if it exists - if ( timeoutTimer ) { - window.clearTimeout( timeoutTimer ); - } - - // Dereference transport for early garbage collection - // (no matter how long the jqXHR object will be used) - transport = undefined; - - // Cache response headers - responseHeadersString = headers || ""; - - // Set readyState - jqXHR.readyState = status > 0 ? 4 : 0; - - // Determine if successful - isSuccess = status >= 200 && status < 300 || status === 304; - - // Get response data - if ( responses ) { - response = ajaxHandleResponses( s, jqXHR, responses ); - } - - // Convert no matter what (that way responseXXX fields are always set) - response = ajaxConvert( s, response, jqXHR, isSuccess ); - - // If successful, handle type chaining - if ( isSuccess ) { - - // Set the If-Modified-Since and/or If-None-Match header, if in ifModified mode. - if ( s.ifModified ) { - modified = jqXHR.getResponseHeader( "Last-Modified" ); - if ( modified ) { - jQuery.lastModified[ cacheURL ] = modified; - } - modified = jqXHR.getResponseHeader( "etag" ); - if ( modified ) { - jQuery.etag[ cacheURL ] = modified; - } - } - - // if no content - if ( status === 204 || s.type === "HEAD" ) { - statusText = "nocontent"; - - // if not modified - } else if ( status === 304 ) { - statusText = "notmodified"; - - // If we have data, let's convert it - } else { - statusText = response.state; - success = response.data; - error = response.error; - isSuccess = !error; - } - } else { - - // Extract error from statusText and normalize for non-aborts - error = statusText; - if ( status || !statusText ) { - statusText = "error"; - if ( status < 0 ) { - status = 0; - } - } - } - - // Set data for the fake xhr object - jqXHR.status = status; - jqXHR.statusText = ( nativeStatusText || statusText ) + ""; - - // Success/Error - if ( isSuccess ) { - deferred.resolveWith( callbackContext, [ success, statusText, jqXHR ] ); - } else { - deferred.rejectWith( callbackContext, [ jqXHR, statusText, error ] ); - } - - // Status-dependent callbacks - jqXHR.statusCode( statusCode ); - statusCode = undefined; - - if ( fireGlobals ) { - globalEventContext.trigger( isSuccess ? "ajaxSuccess" : "ajaxError", - [ jqXHR, s, isSuccess ? success : error ] ); - } - - // Complete - completeDeferred.fireWith( callbackContext, [ jqXHR, statusText ] ); - - if ( fireGlobals ) { - globalEventContext.trigger( "ajaxComplete", [ jqXHR, s ] ); - - // Handle the global AJAX counter - if ( !( --jQuery.active ) ) { - jQuery.event.trigger( "ajaxStop" ); - } - } - } - - return jqXHR; - }, - - getJSON: function( url, data, callback ) { - return jQuery.get( url, data, callback, "json" ); - }, - - getScript: function( url, callback ) { - return jQuery.get( url, undefined, callback, "script" ); - } -} ); - -jQuery.each( [ "get", "post" ], function( i, method ) { - jQuery[ method ] = function( url, data, callback, type ) { - - // Shift arguments if data argument was omitted - if ( jQuery.isFunction( data ) ) { - type = type || callback; - callback = data; - data = undefined; - } - - // The url can be an options object (which then must have .url) - return jQuery.ajax( jQuery.extend( { - url: url, - type: method, - dataType: type, - data: data, - success: callback - }, jQuery.isPlainObject( url ) && url ) ); - }; -} ); - - -jQuery._evalUrl = function( url ) { - return jQuery.ajax( { - url: url, - - // Make this explicit, since user can override this through ajaxSetup (#11264) - type: "GET", - dataType: "script", - cache: true, - async: false, - global: false, - "throws": true - } ); -}; - - -jQuery.fn.extend( { - wrapAll: function( html ) { - var wrap; - - if ( this[ 0 ] ) { - if ( jQuery.isFunction( html ) ) { - html = html.call( this[ 0 ] ); - } - - // The elements to wrap the target around - wrap = jQuery( html, this[ 0 ].ownerDocument ).eq( 0 ).clone( true ); - - if ( this[ 0 ].parentNode ) { - wrap.insertBefore( this[ 0 ] ); - } - - wrap.map( function() { - var elem = this; - - while ( elem.firstElementChild ) { - elem = elem.firstElementChild; - } - - return elem; - } ).append( this ); - } - - return this; - }, - - wrapInner: function( html ) { - if ( jQuery.isFunction( html ) ) { - return this.each( function( i ) { - jQuery( this ).wrapInner( html.call( this, i ) ); - } ); - } - - return this.each( function() { - var self = jQuery( this ), - contents = self.contents(); - - if ( contents.length ) { - contents.wrapAll( html ); - - } else { - self.append( html ); - } - } ); - }, - - wrap: function( html ) { - var isFunction = jQuery.isFunction( html ); - - return this.each( function( i ) { - jQuery( this ).wrapAll( isFunction ? html.call( this, i ) : html ); - } ); - }, - - unwrap: function( selector ) { - this.parent( selector ).not( "body" ).each( function() { - jQuery( this ).replaceWith( this.childNodes ); - } ); - return this; - } -} ); - - -jQuery.expr.pseudos.hidden = function( elem ) { - return !jQuery.expr.pseudos.visible( elem ); -}; -jQuery.expr.pseudos.visible = function( elem ) { - return !!( elem.offsetWidth || elem.offsetHeight || elem.getClientRects().length ); -}; - - - - -jQuery.ajaxSettings.xhr = function() { - try { - return new window.XMLHttpRequest(); - } catch ( e ) {} -}; - -var xhrSuccessStatus = { - - // File protocol always yields status code 0, assume 200 - 0: 200, - - // Support: IE <=9 only - // #1450: sometimes IE returns 1223 when it should be 204 - 1223: 204 - }, - xhrSupported = jQuery.ajaxSettings.xhr(); - -support.cors = !!xhrSupported && ( "withCredentials" in xhrSupported ); -support.ajax = xhrSupported = !!xhrSupported; - -jQuery.ajaxTransport( function( options ) { - var callback, errorCallback; - - // Cross domain only allowed if supported through XMLHttpRequest - if ( support.cors || xhrSupported && !options.crossDomain ) { - return { - send: function( headers, complete ) { - var i, - xhr = options.xhr(); - - xhr.open( - options.type, - options.url, - options.async, - options.username, - options.password - ); - - // Apply custom fields if provided - if ( options.xhrFields ) { - for ( i in options.xhrFields ) { - xhr[ i ] = options.xhrFields[ i ]; - } - } - - // Override mime type if needed - if ( options.mimeType && xhr.overrideMimeType ) { - xhr.overrideMimeType( options.mimeType ); - } - - // X-Requested-With header - // For cross-domain requests, seeing as conditions for a preflight are - // akin to a jigsaw puzzle, we simply never set it to be sure. - // (it can always be set on a per-request basis or even using ajaxSetup) - // For same-domain requests, won't change header if already provided. - if ( !options.crossDomain && !headers[ "X-Requested-With" ] ) { - headers[ "X-Requested-With" ] = "XMLHttpRequest"; - } - - // Set headers - for ( i in headers ) { - xhr.setRequestHeader( i, headers[ i ] ); - } - - // Callback - callback = function( type ) { - return function() { - if ( callback ) { - callback = errorCallback = xhr.onload = - xhr.onerror = xhr.onabort = xhr.onreadystatechange = null; - - if ( type === "abort" ) { - xhr.abort(); - } else if ( type === "error" ) { - - // Support: IE <=9 only - // On a manual native abort, IE9 throws - // errors on any property access that is not readyState - if ( typeof xhr.status !== "number" ) { - complete( 0, "error" ); - } else { - complete( - - // File: protocol always yields status 0; see #8605, #14207 - xhr.status, - xhr.statusText - ); - } - } else { - complete( - xhrSuccessStatus[ xhr.status ] || xhr.status, - xhr.statusText, - - // Support: IE <=9 only - // IE9 has no XHR2 but throws on binary (trac-11426) - // For XHR2 non-text, let the caller handle it (gh-2498) - ( xhr.responseType || "text" ) !== "text" || - typeof xhr.responseText !== "string" ? - { binary: xhr.response } : - { text: xhr.responseText }, - xhr.getAllResponseHeaders() - ); - } - } - }; - }; - - // Listen to events - xhr.onload = callback(); - errorCallback = xhr.onerror = callback( "error" ); - - // Support: IE 9 only - // Use onreadystatechange to replace onabort - // to handle uncaught aborts - if ( xhr.onabort !== undefined ) { - xhr.onabort = errorCallback; - } else { - xhr.onreadystatechange = function() { - - // Check readyState before timeout as it changes - if ( xhr.readyState === 4 ) { - - // Allow onerror to be called first, - // but that will not handle a native abort - // Also, save errorCallback to a variable - // as xhr.onerror cannot be accessed - window.setTimeout( function() { - if ( callback ) { - errorCallback(); - } - } ); - } - }; - } - - // Create the abort callback - callback = callback( "abort" ); - - try { - - // Do send the request (this may raise an exception) - xhr.send( options.hasContent && options.data || null ); - } catch ( e ) { - - // #14683: Only rethrow if this hasn't been notified as an error yet - if ( callback ) { - throw e; - } - } - }, - - abort: function() { - if ( callback ) { - callback(); - } - } - }; - } -} ); - - - - -// Prevent auto-execution of scripts when no explicit dataType was provided (See gh-2432) -jQuery.ajaxPrefilter( function( s ) { - if ( s.crossDomain ) { - s.contents.script = false; - } -} ); - -// Install script dataType -jQuery.ajaxSetup( { - accepts: { - script: "text/javascript, application/javascript, " + - "application/ecmascript, application/x-ecmascript" - }, - contents: { - script: /\b(?:java|ecma)script\b/ - }, - converters: { - "text script": function( text ) { - jQuery.globalEval( text ); - return text; - } - } -} ); - -// Handle cache's special case and crossDomain -jQuery.ajaxPrefilter( "script", function( s ) { - if ( s.cache === undefined ) { - s.cache = false; - } - if ( s.crossDomain ) { - s.type = "GET"; - } -} ); - -// Bind script tag hack transport -jQuery.ajaxTransport( "script", function( s ) { - - // This transport only deals with cross domain requests - if ( s.crossDomain ) { - var script, callback; - return { - send: function( _, complete ) { - script = jQuery( " - - - - - - - - - - - - - - - -
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    Files used in PDF extraction

    -
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    Configuration file

    -

    Configuration files may define the PDF processing parameters. -By default, the pdfgetx3 program attempts to read -.pdfgetx3.cfg file from the user HOME directory, -then .pdfgetx3.cfg and pdfgetx3.cfg files -from the current working directory. -If configuration file has a different name, it needs to be specified -with the -c, --config option. -The pdfgetn3 program works in the same way, -except it checks for configuration files -~/.pdfgetn3.cfg, .pdfgetn3.cfg and pdfgetn3.cfg.

    -

    The easiest way of creating a configuration file is to generate -a template content using the --createconfig option as

    -
    pdfgetx3 --createconfig=test.cfg
-
    -
    -

    and then change the generated test.cfg file in your favorite text -editor. The configuration file follows a simple “varname=value” syntax, -any lines starting with “#” are ignored as comments.

    -

    The configuration file has several sections marked as [SECTIONNAME]. -The [DEFAULT] section is mandatory and it contains the default -global settings. Any other sections are optional and they are applied -only when selected with the -s, --section option on the -command line. Thus

    -
    pdfgetx3 --config=test.cfg --section=nacl
-
    -
    -

    would read the parameters from the [nacl] section after reading the -defaults. Having several sections in the configuration -file is useful when there are multiple measurements that share most of -the parameters, but differ in a few of them, for example in chemical -composition. The configuration file can then contain sections per each -sample that define only the composition, while all other parameters are -specified just once in the global DEFAULT section.

    -
    -
    -

    Input files

    -

    PDFgetX3 and PDFgetN3 accept input powder diffraction data -in the form of two-column text file, -where the first column x is either the scattering angle -2Θ in degrees, momentum transfer Q in inverse nanometers or Q -in inverse ångströms. The second column y contains the corresponding -scattered intensities normalized per unit solid angle. The actual type -of the x-values is identified by the dataformat parameter. -The input files may contain header with comments or metadata, and the -actual data are read from the first long section of numerical values.

    -

    The input files are usually passed as command-line arguments to -pdfgetx3 or pdfgetn3 programs and must be paths -accessible from the current working directory.

    -

    Input files can be also defined by setting the inputfile -value in the configuration file. The -d, --datapath -option can be then used to provide additional data directories to -search for these inputs and for the backgroundfile. -This is to support configuration files located in a different -directory than the data.

    -

    When the --find option is active, the pdfgetx3 arguments -are understood as filename patterns and the input files are found -in the current or specified directory.

    -
    -
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    Output files

    -

    PDFgetX3 and PDFgetN3 can produce up to four different output data files:

    -
      -
    • .iq – I(Q), the background-corrected -intensities sampled on a regular Q-space grid in inverse ångströms,
      • -
    • .sq – S(Q), the total scattering structure function, -with intensities normalized by average scattering factors and -corrected by a polynomial fit,
      • -
    • .fq – F(Q), the reduced structure function equal to Q(S(Q) - 1),
      • -
    • .gr – G(r), the resultant PDF, where the first column is the -separation r in ångströms and the second is the function G in -Å-2.
      • -
    -

    You can specify what output files should be produced by setting the -outputtypes parameter in the configuration file or by -passing the -t, --outputtypes on the command line.

    -

    The header of all output files contains the parameter values that were -used in the calculation and thus it is by itself a valid configuration -file. When passed as an argument to the --config option, -the PDFgetX3 will reproduce the previous calculation.

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    Navigation

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    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.0.0/genindex.html b/static_root/doc/pdfgetx/2.0.0/genindex.html deleted file mode 100644 index d60fb3b2..00000000 --- a/static_root/doc/pdfgetx/2.0.0/genindex.html +++ /dev/null @@ -1,668 +0,0 @@ - - - - - - - - Index — diffpy.pdfgetx 2.0.0 documentation - - - - - - - - - - - - - - - - -
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    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.0.0/install.html b/static_root/doc/pdfgetx/2.0.0/install.html deleted file mode 100644 index 7d6f47bb..00000000 --- a/static_root/doc/pdfgetx/2.0.0/install.html +++ /dev/null @@ -1,234 +0,0 @@ - - - - - - - Installation — diffpy.pdfgetx 2.0.0 documentation - - - - - - - - - - - - - - - - - - -
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    Installation

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    Software requirements

    -

    This software is written in Python programming language, therefore -you must have Python 3.7, 3.6, 3.5, 3.4 or 2.7 installed. In addition, -the following third-party Python libraries are also required:

    -
      -
    • setuptools - tools for installing Python packages
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    • six - Python 2 and 3 compatibility library
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    • NumPy - library for scientific computing with Python
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    • matplotlib - Python plotting library
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    • IPython - enhanced interactive Python shell
      • -
    -

    Standard Python releases can be obtained from -https://www.python.org/downloads. -The third-party libraries can be found at the -Python Package Index -or using any Internet search engine.

    -

    Another more convenient option is to obtain one of the science-oriented -Python distributions such as -Anaconda Python, -Enthought Canopy or -PythonXY, -These distributions already include all the necessary libraries, so the -required Python software can be all installed in one step.

    -

    On Linux operating systems the third-party libraries are usually -included in a system software repository. For example on an -Ubuntu Linux computer the software dependencies can be all installed -with a single shell command

    -
    sudo apt-get install \
-  python3-six python3-setuptools python3-numpy python3-matplotlib ipython3
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    -
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    This may be, of course, as well accomplished using the GUI -driven Synaptic package manager. Other Linux -distributions may use different software management tools, -but the names of the necessary packages should be very similar -to those above.

    -

    On Windows operating system, it may be necessary to add the -C:\Python37 directory and the scripts directory -C:\Python37\Scripts to the system PATH. -Some Python distributions already do so as a part of their -installation process. The easiest way to check is to start the -Command Prompt, type there python and see if this -starts the Python interpreter.

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    Installation

    -

    The diffpy.pdfgetx software is distributed as a Python egg package, -which can be obtained from the -Columbia Technology Ventures. -Once all the required software is in -place, start the command prompt on Windows or a Unix terminal on Linux -or Mac, navigate to the directory that contains the egg file and -execute the following command:

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    python -m easy_install ./diffpy.pdfgetx-VERSION.egg
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    Here VERSION needs to be replaced to match the actual filename. -It is critical to use one of the supported Python versions otherwise -the program would not work. On Linux and Mac operating systems the -installation may need to run with root user privileges, for example, -by prepending sudo to the command line above. -If root access is not available, use the -easy_install options --user, --prefix or ---install-dir to install the software to a user-writable -directory.

    -

    This software provides two programs for PDF conversion, -pdfgetx3 and pdfgetn3. -To check if they are correctly installed run

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    pdfgetx3 --version
-pdfgetn3 --version
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    -
    -

    This should display the software version, which should equal -the VERSION string in the egg package name. -The installation also includes a plotdata -command for an easy plotting of text data files. To verify -if plotdata works, run the plotdata --version command. -Finally, a comprehensive test of the installed software can -be executed using

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    python -m diffpy.pdfgetx.tests.run
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    IPython magic command

    -

    These instructions are intended for IPython users who would like to -integrate PDFgetX3 and PDFgetN3 into their IPython environment. If -you don’t plan to customize IPython in such way you can safely skip -this paragraph.

    -

    When pdfgetx3 or pdfgetn3 are run in interactive mode, they start -IPython interactive shell and define an extra %pdfgetx3 and -%pdfgetn3 magic commands within the IPython session. The IPython -magic commands are not valid Python code, but work in a similar -fashion as standard shell commands. The %pdfgetx3 and %pdfgetn3 -magics can be thus used with the same options and arguments as if run -from the shell. This is useful for processing more files, while -preserving all plots or variables that were already created -in an IPython session.

    -

    The %pdfgetx3 and %pdfgetn3 magic commands can be defined -permanently so they are available in all IPython sessions. To set -this up

    -
      -

    1. find the profile_default/ipython_config.py file and open it -in a text editor. If that file does not exists, -create it first by executing

      -
      ipython profile create
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      -
      -
      2. -

    2. navigate to the paragraph that contains the -c.InteractiveShellApp.extensions and add there -the following line:

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      c.InteractiveShellApp.extensions = ['diffpy.pdfgetx.ipy_magics']
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      There must be no leading indent, i.e., the text must start at the -very first column.

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    Navigation

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    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.0.0/interact.html b/static_root/doc/pdfgetx/2.0.0/interact.html deleted file mode 100644 index 34ca6b3e..00000000 --- a/static_root/doc/pdfgetx/2.0.0/interact.html +++ /dev/null @@ -1,411 +0,0 @@ - - - - - - - Interactive mode — diffpy.pdfgetx 2.0.0 documentation - - - - - - - - - - - - - - - - - - -
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    Navigation

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    Interactive mode

    -

    The interactive mode is activated by using either the --i, --interact option or a non-empty ---plot option. In the interactive mode -the program starts an IPython interactive shell and pre-loads several -functions and variables related to the PDF calculation. It also defines -IPython commands %pdfgetx3 and %pdfgetn3, which can be used with -the same syntax as the pdfgetx3 and pdfgetn3 in -system shell. -The interactive session is also initialized with all functions from the -matplotlib.pyplot module for convenient plotting. -The functions and variables related to PDF processing are:

    -
    -
    -pdfgetter(x=None, y=None, filename='', **kwargs)
    -

    Instance of the PDFGetter class which serves as a -low-level function that calculates the PDF. This is a callable -object, which takes as an argument a pair of input arrays for -(Q, intensity) or (2Θ, intensity) depending on -dataformat. It can be also called with a keyword -argument filename=FILE, which would read the input arrays -from the specified file. When called with no arguments, -it calculates PDF from the last input data.

    - --- - - - - - -
    Parameters:
      -
    • x (numpy.ndarray, optional) – -The Q or 2Θ values in powder diffraction pattern.
      • -
    • y (numpy.ndarray, optional) – -The scattered intensities in powder diffraction pattern
      • -
    • filename (str, optional) – -The text data file for loading the x, y values when -they are not specified.
      • -
    • kwargs (misc, optional) – -Extra keyword arguments that are applied to -the config object, for example qmax=20.
      • -
    -
    Returns:

    A pair of output arrays (r, G).

    -
    -
    - -
    -
    -config
    -

    Instance of the PDFConfig class that stores the -parameters and input files for the program. -Use print(config) to display the current configuration values. -This is the same object as pdfgetter.config. Configuration -may be changed by setting a respective attribute of the -config object, for example:

    -
    In [1]: config.qmax = 21
-
    -
    -

    The config values may be also changed by calling the -pdfgetter() or processfiles() function with a -corresponding keyword argument, for example -processfiles(qmax=20, force="once").

    -
    - -
    -
    -iraw
    -
    -iq
    -
    -sq
    -
    -fq
    -
    -gr
    -

    These variables are assigned the input raw intensities and the -intermediate results, stored as matrix rows. The matrix rows -correspond to twotheta1, intensity1, twotheta2, intensity2, etc. -Because matrices are iterated row first, the raw intensities -from all input files can be plotted with the matplotlib plot -function as plot(*iraw).

    -

    These variables should be considered read-only and are reset -with subsequent PDF calculations.

    -
    - -
    -
    -tuneconfig(plotids=None, pdfgetter=None, axeslist=None)
    -

    Show a GUI dialog for interactive tuning of configuration variables.

    - --- - - - -
    Parameters:
      -
    • plotids – The string or iterable that specify what interactive plots should be -tuned. By default the same as config.plot. It can be also an -integer index or name of a transformation in pdfgetter() or -a reference to a Transformation object.
      • -
    • pdfgetter – The optional PDFGetter object to be tuned. -This is by default the interactive pdfgetter() object.
      • -
    • axeslist – An optional list of matplotlib Axes for showing interactive plots. -When None, use subplot(N, 1, i) to create any necessary axes.
      • -
    -
    -
    -

    Note

    -

    Changes from tuneconfig() apply only to the configuration -and results in memory. Use the processfiles() function -to save them to disk.

    -
    -
    -

    See also

    -

    Interactive tuning of parameters tutorial

    -
    -
    - -
    -
    -processfiles(filename=None, **kwargs)
    -

    Process all input files again with the current configuration values. -This is a higher-level function than pdfgetter(), as -it also saves output files and produces plots as specified by the -config object.

    - --- - - - -
    Parameters:
      -
    • filename – One or more input files to be converted to PDFs and saved or -plotted according to the config settings. Use the -previous list of input files when not specified.
      • -
    • kwargs – An optional keyword arguments to set for the config -object, for example (force="once", qmax=18).
      • -
    -
    -

    This function updates the config.inputfiles -list and the iraw, iq, -sq, fq and gr -interactive variables.

    -
    - -
    -
    -clearsession()
    -

    Clear all elements from the config.inputfiles -and also the -iraw, iq, sq, -fq and gr variables.

    - --- - - - -
    Returns:No return value.
    -
    - -
    -
    -loaddata(filename, minrows=10, usecols=None, **kwargs)
    -

    Find and load data from a text file.

    -

    The data reading starts at the first matrix block of at least minrows rows -and constant number of columns. This seems to work for most of the -datafiles including those generated by PDFGetX2.

    - --- - - - - - -
    Parameters:
      -
    • filename (str) – Name of the file to load the text data from.
      • -
    • minrows (int, optional) – Minimum number of rows in the first data block, by default 10. -All rows must have the same number of floating point values.
      • -
    • usecols (int, str, slice, iterable, optional) – Indices or names of the columns to be loaded from the data block, -the default is all columns. Data blocks that do not contain -sufficient number of columns are skipped. When usecols contain -string items, they are translated to column indices by looking -up a header line preceding the data block. String items formatted -as i:j:k are converted to slice objects. When usecols type -is string it is split to a list of names at comma and whitespace -characters.
      • -
    • unpack (bool, optional) – Return data as a sequence of columns that allows tuple unpacking -such as x, y = loaddata(FILENAME, unpack=True). Note that -transposing the loaded array as loaddata(FILENAME).T has -the same effect. The default is False.
      • -
    • kwargs (misc, optional) – Extra keyword arguments that are passed to numpy.loadtxt.
      • -
    -
    Returns:

    data (numpy.ndarray) – The data block loaded from the text file.

    -
    -
    -

    See also

    -

    numpy.loadtxt()

    -
    -

    This function can be imported from the -diffpy.pdfgetx module.

    -
    - -
    -
    -plotdata(filenames, style=None, x=None, y=None, log=None, ax=None, **kwargs)
    -

    Plot one or more text data files.

    -

    The files are searched for data blocks which have enough columns -to satisfy both x and y selectors of the plotted data. This -may result in an empty plot when file has none wide-enough data -block (e.g., when y=100).

    - --- - - - - - -
    Parameters:
      -
    • filenames (str or an iterable of string file names) – One or more text data files to be plotted.
      • -
    • style (str) – Optional style argument for the matplotlib plot() function.
      • -
    • x (int, str, or iterable, optional) – The column to be used for the x data. This can be a zero-based -index of the desired column or a column name from data header. -A special symbol “.” can be used for a sequential data index. -When not specified, use the first column.
      • -
    • y (int, str, iterable, or slice, optional) – One or more columns to be used for the y data. This can be -a single zero-based index of the desired column or an iterable -of several indices. The y value can be also a string which -is split at commas and converted to integers, column names -or slice objects, e.g. “0,sine,4:7”. The slice instances -are applied to the entire data block from each loaded file. -Use the second column when not specified.
      • -
    • log ({‘x’, ‘y’}, optional) – Set logarithmic scaling for the specified axis and linear scaling -for all others. For example, log="y" applies linear scaling -to the x-axis and logarithmic to the y-axis. Keep the current -axis scaling when not specified.
      • -
    • ax (matplotlib.axes.Axes, optional) – The axes to plot to. The plotting will be performed using the -ax.plot method. The default is pyplot.gca().
      • -
    • kwargs (misc, optional) – Keyword arguments for the matplotlib plot() function.
      • -
    -
    Returns:

    lines (list) – The matplotlib Line2D objects added to the current axis.

    -
    -
    -

    See also

    -

    diffpy.pdfgetx.loaddata()

    -
    -

    This function can be imported from the -diffpy.pdfgetx.plotdata module.

    -
    - -
    -
    -findfiles(patterns=(), path='.', dotfiles=False)
    -

    Find files that match all specified patterns.

    -

    Pattern syntax:

    -
      -
    • ^start - match “start” only at the beginning of the string.
      • -
    • end$ - match “end” only at the end of string.
      • -
    • <7> - match number 7 preceded by any number of leading zeros.
      • -
    • <1-34> - match an integer range from 1 to 34 inclusive.
      • -
    • <7-> - match an integer greater or equal 7.
      • -
    • <-> - match any integer.
      • -
    • + - start a new group of patterns to match more files.
      • -
    • dir/ - set search path effective from the current pattern group.
      • -
    -

    All integer ranges <N-M> above allow one or more leading zeros. -The range syntax does not support matching of negative numbers.

    - --- - - - - - -
    Parameters:
      -
    • patterns (iterable of strings or str, optional) – String patterns that must all match in returned filenames. -Can be also a single string with patterns separated by -whitespace characters. When empty match all files in the -current directory or in the path. A single + starts -a new pattern group for additional matches. Each pattern -group may have one entry containing /, for example, -dir/ or ./, which sets the search directory for -this and subsequent pattern groups. When pattern group -contains only the path entry it reuses file patterns from -the previous group.
      • -
    • path (str, optional) – Directory to be searched for the files. The default is “.” -to search the current directory.
      • -
    • dotfiles (bool, optional) – When True search also the hidden “.” starting files. These -files are by default ignored, but can be explicitly selected -by adding the ^. pattern.
      • -
    -
    Returns:

    filenames (list) – The list of matching filenames. Return all files when -patterns are not specified.

    -
    -

    This function can be imported from the -diffpy.pdfgetx module.

    -
    - -
    - - -
    -
    -
    - -
    -
    -
    -

    Navigation

    - -
    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.0.0/intro.html b/static_root/doc/pdfgetx/2.0.0/intro.html deleted file mode 100644 index 053460b9..00000000 --- a/static_root/doc/pdfgetx/2.0.0/intro.html +++ /dev/null @@ -1,167 +0,0 @@ - - - - - - - Introduction — diffpy.pdfgetx 2.0.0 documentation - - - - - - - - - - - - - - - - - - -
    -

    Navigation

    - -
    - - - -
    -
    -
    -
    - -
    -

    Introduction

    -

    diffpy.pdfgetx is a simple yet powerful software for converting X-ray -or neutron powder diffraction data to atomic Pair Distribution Functions -(PDFs). The software includes command line programs PDFgetX3 and -PDFgetN3 for processing X-ray and constant-wavelength neutron -diffraction data respectively. PDFgetX3 and PDFgetN3 can be used in -a batch mode to convert a series of data files without user -intervention. The programs can be also run in an interactive -mode that allows to control process parameters and plot the PDFs -and any intermediate results. Users can interactively tune the -PDF processing parameters, visualize their effect on the results and -adjust them to their optimum values. The programs are bundled with -Python library diffpy.pdfgetx for PDF processing functions, which -can be used in custom Python scripts.

    -
    -

    License notice

    -

    Use of this software is subject to and permitted only under a separate, -written Use License granted by Columbia University. If you or your employer -is not a party to such an agreement, then your use of this software is -prohibited. If you don’t know whether or not your anticipated use is under -a license, you must contact Prof. Simon Billinge at sb2896@columbia.edu. -Use of this software without a license is prohibited.

    -

    Copyright 2009-2018, Trustees of Columbia University in the City of New York.

    -

    For more information please email Prof. Simon Billinge at sb2896@columbia.edu

    -
    -
    -

    Authors

    -

    This code was written by members of the Billinge Group at -Columbia University and Brookhaven National Laboratory including -Pavol Juhás, -Timur Davis, -Christopher Wright, -Christopher Farrow, -Simon Billinge.

    -
    -
    -

    References

    -

    If you use this program for a scientific research that leads -to publication, we ask that you acknowledge use of the program -by citing the following paper in your publication:

    -
    -
    P. Juhás and T. Davis, C. L. Farrow, S. J. L. Billinge -PDFgetX3: A rapid and highly automatable program for processing -powder diffraction data into total scattering pair distribution -functions, -J. Appl. Crystallogr. 46, 560-566 (2013)
    -

    For research publications that use this software to process neutron -diffraction data we ask you to also cite:

    -
    -
    P. Juhás, J. N. Louwen, L. van Eijck, E. T. C. Vogt, -S. J. L. Billinge -PDFgetN3: atomic pair distribution functions from neutron -powder diffraction data using ad hoc corrections, -J. Appl. Crystallogr. 51 (2018)
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    - - -
    -
    -
    - -
    -
    -
    -

    Navigation

    - -
    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.0.0/objects.inv b/static_root/doc/pdfgetx/2.0.0/objects.inv deleted file mode 100644 index 229c25ae..00000000 Binary files a/static_root/doc/pdfgetx/2.0.0/objects.inv and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.0.0/options.html b/static_root/doc/pdfgetx/2.0.0/options.html deleted file mode 100644 index e9b19fce..00000000 --- a/static_root/doc/pdfgetx/2.0.0/options.html +++ /dev/null @@ -1,647 +0,0 @@ - - - - - - - Options and parameters — diffpy.pdfgetx 2.0.0 documentation - - - - - - - - - - - - - - - - - - -
    -

    Navigation

    - -
    - - - -
    -
    -
    -
    - -
    -

    Options and parameters

    -

    PDFgetX3 and PDFgetN3 are very flexible in allowing users to customize -the actions of the program. They have a number of parameters that can -be specified either in configuration file or as command line options. -Here is a complete description of the parameters and options used by -either program.

    -
    -

    Note

    -

    The command line options start with a leading “-” and can -be only used as command line arguments when starting the -pdfgetx3 program. Within configuration file the parameter -names are plain words without any leading dashes. Finally, -parameters can be also set in the interactive mode as attributes of -the config object, but the assignments must be valid -Python statements. Here are examples of setting composition of -a processed specimen using each of these forms:

    -
      -

    1. assigned in configuration file:

      -
      ...
-composition = CaTiO3
-...
-
      -
      -
      2. -

    2. set as a command-line option when starting pdfgetx3 or -pdfgetn3:

      -
      pdfgetx3 --composition=CaTiO3
-
      -
      -
      3. -

    3. set in the IPython interactive mode:

      -
      pdfgetx3 -i
-...
-In [1]: config.composition = "CaTiO3"
-
      -
      -
      4. -
    -
    -
    -

    Program operation

    -
    -
    --h, --help
    -

    Display a brief usage information with a list of command line options -and exit.

    -
    - -
    -
    --V, --version
    -

    Display the program version and exit.

    -
    - -
    -
    ---manual
    -

    Open this manual in a Web browser and exit.

    -
    - -
    -
    --f, --find
    -
    - -
    -

    Select input files that match all patterns. The command -line arguments are by default taken as input files. However, -with the --find option they are processed as -file patterns and the matching files are then used as inputs. -The input files are by default searched in the current directory -unless there is a path entry (e.g., data/) that -selects a different search path. The search patterns are -interpreted as fixed strings, all of which must be present -in the file name. A single argument + starts -a new group of patterns to match more files that are not -covered by one set of patterns. Additional pattern -groups reuse the current search path unless they provide -their own path value. Pattern groups containing only -a path entry reuse file patterns from the last group. -When pattern groups overlap the repeated matches are ignored -to make the resulting list of files unique. Files starting -with . are ignored unless there is ^. pattern -that explicitly matches them. The search -syntax provides the following special patterns:

    - ---- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    ^match at the beginning of the string, i.e., ^start -matches only filenames that start with “start”.
    $match at the end of string, for example, .chi$ selects -file names ending with “.chi”. A $ on its own -matches every string and can be used to select all files.
    <N>match number N preceded by any number of leading zeros, -e.g., <7> would match in “f7.chi”, “f007.chi”, but not -in “f77.chi”.
    <N-M>match an integer range from N to M inclusive. -The matched number may have one or more leading zeros.
    <7->match number 7 or larger.
    <-7>match number 7 or smaller.
    <->match any integer number.
    +start a new pattern group, for example, .chi$ + .dat$
    /set search path. An argument containing the / symbol -is taken as the search path, for example, data/ or -./. Each pattern group may provide its own search -path effective for that and any subsequent pattern group.
    -

    The ^$<> characters are often special to Unix or Windows -command shells, therefore they need to be enclosed in double -quotes (") when used on command line.

    -
    -

    See also

    -

    tutorial on matching input files

    -
    -
    -
    -
    --l, --list
    -

    List all input files and exit. This is useful with the ---find option to verify if input files -are matched as intended.

    -
    - -
    -
    -

    Configuration file options

    -
    -
    --c CONFIG, --config=CONFIG
    -

    Read custom configuration file after loading the default ones. -Do not load any configuration file when “NONE”.

    -
    - -
    -
    --s NAME, --section=NAME
    -

    Load the custom configuration file section [SectionName] after -loading the [DEFAULT] section. This is useful for creating -several configuration variants in a single configuration file.

    -
    - -
    -
    ---createconfig=FILE
    -

    Write template configuration to a new FILE and exit. Write -to the standard output when FILE is “-“.

    -
    - -

    See also the configuration file section -for further details.

    -
    -
    -

    Input and output options

    -
    -
    -inputfile
    -

    This parameter allows to specify one or more input files in the -configuration file, one file per line. The inputfile -is only used if no input files were provided on the -pdfgetx3 or pdfgetn3 command line.

    -
    - -
    -
    -dataformat
    -
    - -
    -
    ---format=FORMAT
    -

    Format of input files. Available formats are: twotheta, QA, -Qnm corresponding to a two-column text data where the first -column is either the scattering angle 2Θ in degrees, Q in -inverse ångströms or Q in inverse nanometers.

    -
    - -
    -
    -backgroundfile
    -
    - -
    -
    --b FILE, --background=FILE
    -

    Optional datafile with background intensities from an empty sample -holder. It must be in the same dataformat as other input files.

    -
    - -
    -
    -datapath
    -
    - -
    -
    --d DATAPATH, --datapath=DATAPATH
    -

    One or more extra directories to be searched for input or -background data files. The -d option can be specified -several times to add more directories, these are prepended in front -of any default value. Within configuration file the datapath -directories have to be listed each on a separate line.

    -

    A special value “NONE” (or “none”) clears any previously defined -paths and only the further paths, if any, would be searched for -inputs.

    -
    - -
    -
    -output
    -
    - -
    -
    --o OUTPUT, --output=OUTPUT
    -

    Output file name, write to the standard output when “-“. The --t, --outputtypes option controls what results are -being saved. Normally the OUTPUT is used as a custom basename for -the output files. The OUTPUT may contain @f, @h, @r, @e, @t, @b, @o -tokens, which are expanded as follows:

    - ----- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    tokenexampledefinition
    @hdir1/dir2the input file directory or “.”
    @rdir1/dir2/filenamethe input path with extension removed
    @edatthe input file extension without “.”
    @tfilename.datthe tail component of the input file
    @bfilenamethe tail component with extension removed
    @ogrthe output extension iq, sq, fq or gr
    -

    An empty value works the same as “@b.@o” and saves the data -in the current directory with a proper extension for the -saved results. When “@o” is not present in the OUTPUT, it is -appended as a default filename extension.

    -
    - -
    -
    -outputtypes
    -
    - -
    -
    --t TYPES, --outputtypes=TYPES
    -

    Result types to be saved, one or more comma separated values. -Supported values are “iq”, “sq”, “fq”, “gr”, corresponding to the -I(Q), S(Q), F(Q) and G(r) curves; these are also used as output -file extensions.

    -

    Result files are not written when empty, “none” or “NONE”.

    -
    - -
    -
    -force
    -
    - -
    -
    ---force=FORCE
    -

    Overwrite existing output files. By default the output -files are not written if they already exist. Possible values -in a configuration file are “true”, “yes”, “on”, “1” or -“false”, “no”, “off”, “0” or “once”. The special value “once” -permits one overwrite and then resets config.force to -False. Note that in interactive mode the values assigned -to config.force are converted to Python bool -unless equal to “once”.

    -
    - -
    -
    -

    PDF parameters

    -
    -
    -mode
    -
    - -
    -
    ---mode=STRING
    -

    The PDF conversion mode, i.e., the name of the -pdfgetter() setup. The available modes correspond -to the radiation type used in powder diffraction experiment and can -be “xray” or “neutron”.

    -
    - -
    -
    -wavelength
    -
    - -
    -
    --w FLOAT, --wavelength=FLOAT
    -

    X-ray wavelength in ångströms. This value is required -for the “twotheta” dataformat in order to convert the scattering -angles 2Θ to a momentum transfer Q. For other data formats -the wavelength is not necessary and may be left undefined.

    -
    - -
    -
    -twothetazero
    -
    - -
    -
    ---twothetazero=FLOAT
    -

    Position of the zero scattering angle in diffractometer degrees. -This parameter corrects for a constant offset in the -measured 2Θ values. When loading configuration file -it is assumed 0 unless specified otherwise. This parameter -is only effective for the “twotheta” dataformat.

    -
    - -
    -
    -composition
    -
    - -
    -
    ---composition=STRING
    -

    Chemical composition of the sample. Supported formats are -“PbTi0.5Zr0.5O3”, “Pb 1 Ti 1/2 Zr 1/2 O 3” or “CH3 (CH2)3 OH”. -Space characters are ignored, unit counts can be omitted, but it is -important to use a proper upper and lower case in atom symbols. -Elements can appear several times in the formula, e.g., “CH3 CH3”, -and the formula may contain parentheses or fractional -stoichiometries.

    -
    - -
    -
    -bgscale
    -
    - -
    -
    ---bgscale=FLOAT
    -

    Scaling of the background intensities loaded from the -backgroundfile, by default 1.

    -
    - -
    -
    -rpoly
    -
    - -
    -
    ---rpoly=FLOAT
    -

    r-limit for the maximum frequency in the F(Q) correction polynomial. -The PDF is unreliable at shorter r, however a -very small rpoly would disable polynomial correction and -give noisy PDF. -Larger values produce closer fits with a higher degree polynomial, -but when too large, they might smooth-out a useful signal in the -data. The default is 0.9.

    -
    - -
    -
    -qmaxinst
    -
    - -
    -
    ---qmaxinst
    -

    The Q cutoff for the meaningful input intensities in inverse -ångströms. Some data files may contain trailing zeros -or unreliable intensities at the upper bound of the detector range. -The qmaxinst defines a threshold for unreliable data. -The parameter is also used as an upper boundary for the polynomial -fit correction of the S(Q) data.

    -
    - -
    -
    -qmin
    -
    - -
    -
    ---qmin
    -

    The lower Q-limit for the Fourier transformation of the F(Q) curve -in inverse ångströms.

    -
    - -
    -
    -qmax
    -
    - -
    -
    ---qmax
    -

    The upper Q-limit for the Fourier transformation of the F(Q) curve -in inverse ångströms. This is essentially a limit, where sample -signal decays to the level of data noise.

    -
    - -
    -
    -rmin
    -
    - -
    -
    ---rmin=FLOAT
    -

    Lower bound of the r-grid for the calculated PDF in ångströms.

    -
    - -
    -
    -rmax
    -
    - -
    -
    ---rmax=FLOAT
    -

    Upper bound of the r-grid for the calculated PDF in ångströms.

    -
    - -
    -
    -rstep
    -
    - -
    -
    ---rstep=FLOAT
    -

    Spacing of the r-grid for the calculated PDF in ångströms.

    -
    - -
    -
    -

    Other parameters

    -
    -
    -plot
    -
    - -
    -
    --p TYPES, --plot=TYPES
    -

    Plot the specified results. A comma separated list with one or -more items from “iq”, “sq”, “fq”, “gr”. No plot is produced when -empty, “none” or “NONE”. Setting this option turns on the -interactive mode.

    -
    - -
    -
    -interact
    -
    - -
    -
    --i, --interact
    -

    Start an IPython interactive session after processing all files. -Useful for tuning the configuration parameters or interactive -plotting. This is always on when plot option has been set. -See also Interactive mode for further details.

    -
    - -
    -
    -verbose
    -
    - -
    -
    ---verbose=VALUE
    -

    Level of detail for the program to report about its actions. -Possible values are “error”, “warning”, “info”, “debug”, “all” or an -integer number from 0 to 5. Messages are completely suppressed when -0, all messages are printed when verbose is 5 (“all”) or higher. -This option is useful for diagnostics of any unexpected behavior -in the program.

    -
    - -
    -
    - - -
    -
    -
    - -
    -
    -
    -

    Navigation

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    The plotdata program

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    The PDFgetX3 software includes a simple stand-alone utility -plotdata for plotting text data files. In most cases -this program can be invoked from a command-shell as

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    plotdata file1.dat file2.dat
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    which plots the numerical data from the text files file1.dat, -file2.dat together in a single graph. By default the first -column is used as an x variable and the second column is used for the -y values. After displaying the plot the program starts an IPython -interactive session allowing the user to modify or save plots. The -IPython session is initialized with the filenames variable -containing a list of plotted files. It also pre-loads the -plotdata() and findfiles() functions just as in PDFgetX3 -interactive session. The plotdata() -function works in a similar way as the plotdata program, -just its arguments need to be passed as Python function arguments -instead of command-line options. Thus an equivalent call of the -plotdata() function would be:

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    In [1]: plotdata(['file1.dat', 'file2.dat'])
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    Selecting files

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    The plotdata program includes a file searching feature -that is useful for selecting a set of files in large -directories. It is also convenient for Windows operating systems, -where the command prompt cannot do filename expansion for patterns -such as *.dat. The file search feature is controlled by the -following options:

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    --f, --find
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    Use command line arguments as filename patterns and plot all matching -files. This option works in the same way as for -pdfgetx3, for full details see the -pdfgetx3 --find documentation. Note that -within command line the special patterns ^$<> need to be quoted -in double quotes (") so they are not processed by command shell.

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    --l, --list
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    List the input files and exit. This is useful in conjunction -with the -f, --find option to check if data files -are selected as intended.

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    Assuming the current directory contains 20 files named -file1.dat, file2.dat, …, file20.dat, -the plotting of files 9 to 13 could be done (with a check listing) -as follows

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    $ plotdata -fl "<9-13>.dat"
-file9.dat
-file10.dat
-file11.dat
-file12.dat
-file13.dat
-$ plotdata -f "<9-13>.dat"
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    Within an interactive IPython session the equivalent plot could be -produced by combining the plotdata() and findfiles() functions as

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    In [1]: plotdata(findfiles("<9-13>.dat"))
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    Selecting x and y data

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    The plotdata program provides several ways of selecting -columns for x or y data and for specifying plot markers or line -formats. The columns can be specified using their integer index, -but one needs to keep in mind the index of the first column is “0” -as per Python indexing conventions. Here is a list of options -supported by the plotdata program (and function):

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    --x X
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    index or name of the x-column to plot. See the -y option -for the supported syntax, but note that X may select only one -column. When set to “.” use the data-row index for x.

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    --y Y
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    index or name of the y-column or columns to plot. The Y column -specification can be a comma separated list of indices, column names -or Python-like ranges, for example “1,2”, “G”, “1:4” (START:STOP, -same as “1,2,3”), “1:4:2” (START:STOP:STEP, same as “1,3”), or -“-2:” (same as “-2,-1”, i.e, the last 2 columns). Because column -indexing starts at “0” the second column must be specified as “1”.

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    The column names work if the data section in the file is preceded by -a headline of unique column names, for example:

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    x     square      cube
-1     1           1
-2     4           8
-3     9           27
-4     16          64
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    For such data file the plotdata program will recognize column names -“x”, “square” and “cube” and an implicit “.” for row index.

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    --s STYLE, --style=STYLE
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    optional plot format specification. See the -matplotlib.pyplot.plot() function -for a list of available formats.

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    --L LOG, --log=LOG
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    axes to be plotted with logarithmic scaling, for example, “x”, “y” or -“xy”. Axes not listed in LOG will use linear scaling.

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    --h, --help
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    display a brief usage info and exit.

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    --V, --version
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    show program version and exit.

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    ---manual
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    Open this manual page in a Web browser and exit.

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    Examples

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    The examples directory plotdata contains a sincos.dat -file that has 3-columns of values labeled as “x”, “sin” and “cos”. -Here are several examples of the plotdata capabilities -when used from command line - the user is encouraged to try them out:

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    plotdata sincos.dat
-plotdata -y 1,2 sincos.dat
-plotdata -x . -y 0:3 sincos.dat
-plotdata -y cos sincos.dat
-plotdata -x sin -y cos -sr-- sincos.dat
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    An equivalent usage from a general IPython session would be:

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    ipython --matplotlib=auto
-In [1]: from diffpy.pdfgetx.plotdata import plotdata
-In [2]: plotdata('sincos.dat')
-In [3]: plotdata('sincos.dat', y=[1,2])
-In [4]: plotdata('sincos.dat', x='.', y=':3')
-In [5]: plotdata('sincos.dat', y='cos')
-In [6]: plotdata('sincos.dat', x='sin', y='cos', style='r--')
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    Quick-start guide

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    This guide assumes that the software has been correctly installed and -its command line programs PDFgetX3 and PDFgetN3 can be executed by -typing pdfgetx3 or pdfgetn3 in a shell -window. Please, refer to the installation section -if this is not working yet.

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    pdfgetx3 command

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    The pdfgetx3 program is a command-line application, therefore all -the input files and run-parameters are supplied either as command-line -arguments or through a configuration file. In general, the pdfgetx3 is -executed from a command shell as

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    pdfgetx3 [options] input1 input2 ... inputN
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    The inputN stands for an input powder diffraction data. The -inputN file is a simple two-column text file, where the first -column corresponds to either the 2Θ diffraction angle, or a -momentum transfer, Q, in inverse nanometer or inverse ångström units. -The second column contains the corresponding X-ray intensities. The -input file may start with a header containing comments or metadata -related to the measurement. PDFgetX3 will ignore any text leading to a -long two-column section. The example input files in this manual were -created with the -FIT2D program using -its “chi” output format, thus we will also refer to them as “chi-files”. -A typical content of a “chi” file looks as folows:

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    Pt_bulk-00055.tif: 2-theta Scan
-2-Theta Angle (Degrees)
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-       1465
- 2.0003892E-02  0.0000000E+00
- 6.0011677E-02  0.0000000E+00
- 1.0001946E-01  0.0000000E+00
- 1.4002724E-01  0.0000000E+00
- 1.8003502E-01  0.0000000E+00
- ...
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    The command-line options are arguments that start with a dash “-” and -are used to specify run-parameters or modify the program behavior. The -options can be specified in a short form that consists of a dash and -a single character, or in a long, more descriptive format starting with -a doubled dash --. Options may require values. For short options, -the value may be joined to the option string, for example --w0.142774, while for the long options it has to be separated -with an equal sign, e.g., --wavelength=0.142774. Although -all the PDF calculation parameters can be passed as command line -options, it is often more convenient to set them in a configuration -file. When run parameter is present both in a configuration file and -as command-line option, the command-line value takes precedence. The -command-line options are all described in the Options and parameters section of -this manual. A brief summary of options can be also displayed by -executing

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    pdfgetx3 --help
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    The best way of getting familiar with PDFgetX3 is to process -the example diffraction data described in the Tutorial. -In general, the first step is to create a commented configuration file -pdfgetx3.cfg using:

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    pdfgetx3 --createconfig=pdfgetx3.cfg
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    The configuration file can have any name, but it is preferable -to use either pdfgetx3.cfg or .pdfgetx3.cfg, -for these files are automatically loaded by PDFgetX3. All -other configuration files must be passed explicitly to the program -using the -c, --config option.

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    Open the pdfgetx3.cfg file in a text editor. The lines that -start with a hash mark # are comments and are not used. The lines -starting with a right brace [ denote sections in the configuration -file. The active lines are all formatted as -“NAME=VALUE”. Although PDFgetX3 has many options, in general only a few -of them are critical for the PDF calculation:

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    • dataformat – specifies the input data format
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    • wavelength – radiation wavelength in Å required for the -“twotheta” format.
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    • composition – chemical composition of the sample
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    • qmaxinst – upper Q boundary for a meaningful measurement -intensities.
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    • qmax – Q-cutoff for the Fourier transformation that -yields the PDF.
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    Save the updated configuration file and run pdfgetx3 on the input data -FILENAME.chi as

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    pdfgetx3 --verbose=info -t gr FILENAME.chi
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    Here the --verbose=info option makes pdfgetx3 -print -more information about its operation. This helps to verify -if the configuration file is indeed loaded and if the parameter -values are assigned as intended. The PDFgetX3 will not write -any output files unless told so. The -t gr option -tells the program to save the final G(r) curve as a -FILENAME.gr file in the working directory.

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    The saved .gr file contains a header with all the calculation -parameters and the input file name. The .gr file can be therefore -also used as a configuration file in order to redo the same -calculation

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    pdfgetx3 -c FILENAME.gr --plot=fq,gr
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    Note this command does not include any .chi file and this will as -a result process the previously used input FILENAME.chi. -The --plot=fq,gr option tells PDFgetX3 to -display 2 plots for the reduced structure function F(Q) and the -final PDF G(r). The --plot option also implies an -interactive mode -therefore the program does not exit, but starts an -interactive IPython session. To exit the interactive mode, -type exit() and press Enter.

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    pdfgetn3 command

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    The pdfgetx3 and pdfgetn3 programs operate in a very similar fashion -apart from being set to assume X-ray and neutron data respectively. -The type of the scattering data can be also specified using the ---mode option. Running pdfgetn3 is nearly identical -to executing pdfgetx3 --mode=neutron. The only difference between -these commands is that pdfgetx3 checks for configuration files -pdfgetx3.cfg and .pdfgetx3.cfg, whereas -pdfgetn3 looks for pdfgetn3.cfg and .pdfgetn3.cfg.

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    Please refer to the tutorial section for -a step-by step processing of the example data files and for -demonstration of capabilities in PDFgetX3 and PDFgetN3.

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    Release notes

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    Version 2.0.0 – 2018-11-02

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    Added

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    • New mode neutron for processing constant-wavelength -neutron scattering data.
      • -
    • Correction for an offset of diffractometer zero angle.
      • -
    • Configuration parameter twothetazero and command-line option ---twothetazero for position of the actual zero angle -in diffractometer degrees.
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    • New program pdfgetn3 and IPython magic %pdfgetn3.
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    • Separate configuration file pdfgetn3.cfg for the pdfgetn3 program.
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    • New sub-package diffpy.pdfgetx.apps for entry points to all programs.
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    • The + operator for additive pattern groups when matching input files -with pdfgetx3 --find.
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    • An optional slash-containing entry, e.g., dir/, to set the search path -for pdfgetx3 --find. Each pattern group may have one path entry which -affects the current and subsequent pattern groups. Pattern groups that -have only the path entry reuse the previous file patterns, for example, -dir1/ .dat$ + dir2/ + dir3/.
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    • The dotfiles flag argument to functs.findfiles to also find -dot-starting files without an explicit pattern.
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    • Support for Python 3.7.
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    • Tutorial examples for constant-wavelength neutron diffraction data.
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    Changed

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    • Initialization arguments of PDFConfig to set initial configuration values.
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    • path argument of functs.findfiles to give one search path instead -of a list of paths.
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    • pdfgetx3 --find to search only the current directory and stop searching -in --datapath.
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    • Improved PDF accuracy by removing repeated Q-grid interpolation.
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    • Handling of dot files by pdfgetx3 --find and the functs.findfiles -function. The dotfiles are by default ignored unless explicitly selected -by a "^." pattern.
      • -
    • Return type of functs.findfiles from IPython SList to a simple list.
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    • Rename camel case interactive functions to lowercase, i.e., to loaddata, -processfiles, clearsession.
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    • Use config.datapath lookup in processfiles(filename).
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    Deprecated

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      -
    • IPython extension module diffpy.pdfgetx.ipy_pdfgetx3. -Use diffpy.pdfgetx.ipy_magics instead.
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    • Camel case functions loadData, processFiles, clearSession.
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    Removed

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    • Support for Python 2.6.
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    • Processing of environment variable PDFGETX3PATH.
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    • Support for IPython 0.x.
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    • Obsolete variable __gitsha__ from the version module.
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    • Processing of command line options in PDFConfig class.
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    • Implicit loading of configuration files in PDFConfig instantiation.
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    Fixed

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      -
    • Import of all objects from matplotlib.pyplot into -an interactive session started by plotdata.
      • -
    • Inaccurate G interpolation when rstep is comparable to pi / qmax.
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    • Lone anchor patterns ^, $ to match everything.
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    Version 1.2 – 2018-01-12

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    -

    Added

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      -
    • Support for Python 3.4, 3.5, 3.6 in addition to Python 2.6 and 2.7.
      • -
    • Support for IPython 5.0 with preserved -compatibility with IPython 0.10 and later.
      • -
    • Support for matplotlib 2.0.
      • -
    • New option --log=LOG for the plotdata program to set logarithmic -scale for either of x or y axis. The plotdata() function learnt -a new log argument with the same purpose.
      • -
    • New argument ax for the plotdata() function that select a specific -matplotlib axis for plotting.
      • -
    • Support for Unicode filenames and values in the config -interactive variable.
      • -
    • Processing of parentheses and fractional stoichiometries in chemical -formulas as in Pb (Ti Zr)1/2 O3.
      • -
    • Explanatory error message when PDFgetX3 was installed for -unsupported Python.
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    Changed

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      -
    • The egg package file was enhanced to support all Python -versions. The software is now distributed in a single -egg rather than multiple eggs per each Python version.
      • -
    • PDFgetX3 option --force to take a boolean argument -(yes, no, true, etc.) or once. The configuration -parameter force can be likewise set to a bool or to -a string "once". This enables a safer one-time -overwrite of existing output files.
      • -
    • Plot labels to use a proper Unicode “Å” (Ångström) symbols. -The “Å” symbol is also used within units in output files.
      • -
    • The usecols argument of the loadData() function to also -accept scalars, open-end slice objects and string-denoted -slices such as "1:3" or "1:".
      • -
    • The plotdata program and plotdata() function to accept -open-end slices for the y-columns selection.
      • -
    • The IPython magic function %pdfgetx3 to set the _exit_code -variable as do generic shell commands run from IPython.
      • -
    • Inline documentation to use NumPy-style Napoleon format, -which is human readable and can be included in the manual.
      • -
    • Release scripts to build software package bundles and -documentation in binary-reproducible way.
      • -
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    Deprecated

    -
      -
    • Compatibility with Python 2.6.
      • -
    • Support for IPython 0.x.
      • -
    • Variable __gitsha__ in the version module which was renamed -to __git_commit__.
      • -
    -
    -
    -

    Removed

    -
      -
    • The hold argument of the plotdata() function, -because it was deprecated in matplotlib.
      • -
    • Support for multiple x-columns in plotdata program and -plotdata() function.
      • -
    • Import of all objects from numpy module into the interactive -session. NumPy is available under the np name instead.
      • -
    -
    -
    -

    Fixed

    -
      -
    • Avoid duplicate “.gr.gr” extension when pdfgetx3 is run -with option --output=f.gr.
      • -
    • Crash on loading custom configuration section from a local -file, when that section is missing in global configuration.
      • -
    • Missing checkbox in the tuneconfig() dialog caused by -matplotlib bug.
      • -
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used in PDF extraction","diffpy.pdfgetx","Installation","Interactive mode","Introduction","Options and parameters","The plotdata program","Quick-start guide","Release notes","Tutorial"],titleterms:{Added:8,The:6,author:4,chang:8,command:[2,7],configur:[0,5,9],content:1,data:[6,9],deprec:8,diffpi:1,exampl:6,extract:0,file:[0,5,6,9],fit:9,fix:8,from:9,guid:7,indic:1,input:[0,5,9],instal:2,interact:[3,9],introduct:4,ipython:2,licens:4,magic:2,match:9,mode:3,name:9,neutron:9,nickel:9,note:8,notic:4,oper:5,option:5,other:5,output:[0,5,9],paramet:[5,9],path:9,pdf:[0,5,9],pdfgetn3:7,pdfgetx3:7,pdfgetx:1,platinum:9,plotdata:6,predefin:9,process:9,program:[5,6],quick:7,rai:9,refer:4,releas:8,remov:8,requir:2,scratch:9,search:9,select:6,seri:9,softwar:2,start:7,tabl:1,tune:9,tutori:9,twothetazero:9,used:0,version:8}}) \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.0.0/tutorial.html b/static_root/doc/pdfgetx/2.0.0/tutorial.html deleted file mode 100644 index 4fdebdcd..00000000 --- a/static_root/doc/pdfgetx/2.0.0/tutorial.html +++ /dev/null @@ -1,761 +0,0 @@ - - - - - - - Tutorial — diffpy.pdfgetx 2.0.0 documentation - - - - - - - - - - - - - - - - - - -
    -

    Navigation

    - -
    - - - -
    -
    -
    -
    - -
    -

    Tutorial

    -

    In this tutorial we will convert several X-ray powder diffraction -patterns to corresponding PDFs. Open a terminal on a Unix-based system -or a Command Prompt on Windows and navigate to the examples -folder included with the PDFgetX3 distribution. The examples -folder can be found in the parent “doc” directory relative to this -document or another option is to just search your file system for -one of the input files mentioned below. -The example files are also available at -https://www.diffpy.org/doc/pdfgetx/2.0.0/pdfgetxn3-examples.zip.

    -
    -

    Nickel X-ray PDF

    -
    -

    predefined configuration file

    -

    Change to the Ni directory. The file named -ni300mesh_300k_nor_1-5.chi contains powder X-ray data -measured from nickel at the Advanced Photon Source beamline -6ID-D. The file contains two columns for the 2Θ scattering -angles and X-ray intensities. The second file -kapton_bgrd_300k_nor_2-3.chi contains the background -measurement, i.e., the intensities from an empty capillary. -Finally, the pdfgetx3.cfg contains a complete configuration -parameters for converting the powder pattern to a PDF. Since all -processing parameters are already defined in the configuration file, -the first PDF calculation is very simple and involves running the -pdfgetx3 program -with the powder data file as an argument:

    -
    $ pdfgetx3 ni300mesh_300k_nor_1-5.chi
-
    -
    -

    For the first run there should be no output on the screen, -however a new file, ni300mesh_300k_nor_1-5.gr should appear -in the work directory. -We can use the plotdata program, -included with this software, to plot the output data:

    -
    $ plotdata ni300mesh_300k_nor_1-5.gr
-
    -
    -

    This will open a graph window and start an IPython interactive session. -To exit and close the figure, type exit() on the IPython prompt. -Let’s run the program again, but now with a ---verbose=info -option, to show more details about the program actions.

    -
    $ pdfgetx3 --verbose=info ni300mesh_300k_nor_1-5.chi
-
-INFO:applying pdfgetx3 defaults
-INFO:set config.mode = xray
-INFO:searching for default config file /home/user/.pdfgetx3.cfg
-INFO:searching for default config file .pdfgetx3.cfg
-INFO:searching for default config file pdfgetx3.cfg
-INFO:loaded default config file pdfgetx3.cfg
-INFO:reset config.twothetazero = 0.0
-INFO:parsing config file section [DEFAULT]
-INFO:set config.dataformat = twotheta
-INFO:set config.backgroundfile = kapton_bgrd_300k_nor_2-3.chi
-INFO:set config.outputtypes = gr
-INFO:set config.wavelength = 0.142774
-INFO:set config.composition = Ni
-INFO:set config.qmaxinst = 26.5
-INFO:set config.qmax = 26.0
-INFO:set config.rmin = 0.0
-INFO:set config.rmax = 30.0
-INFO:set config.rstep = 0.01
-INFO:finished parsing config file
-INFO:processing command line options
-INFO:set config.verbose = info
-INFO:finished with command line options
-INFO:using 1 input files from the command line.
-INFO:configuring PDFGetter mode 'xray'
-INFO:calling config_xray
-INFO:started PDF processing.
-INFO:processing 'ni300mesh_300k_nor_1-5.chi'
-INFO:resolved output file '' as 'ni300mesh_300k_nor_1-5.gr'
-WARNING:ni300mesh_300k_nor_1-5.gr already exists.
-WARNING:Use "--force=yes" or "--force=once" to overwrite.
-INFO:elapsed time: 0.095
-
    -
    -

    Here we can see what configuration files are searched, which of them -get loaded and what are the effective values of the processing -parameters. Unless the --verbose option is in effect, the -program will show only messages that have either WARNING or ERROR -importance. The warning line above indicates no output has been -written, because that file already exists. This safety check can be -overruled with the --force=yes option, upon -which pdfgetx3 would overwrite any existing files.

    -

    PDFgetX3 output files start with a header that lists all the processing -parameters and can be used as a valid configuration file with the --c option. Another option, --plot=[iq,sq,fq,gr] turns on plotting of the final PDF or of some other result. A -side effect of the --plot option is that pdfgetx3 starts in -an interactive mode, so the user can manipulate or save the plots. To -put it all together, we are now going to redo the original PDF and plot -its reduced total scattering function F(Q) and the PDF curve G(r). This -time the chi file is not necessary, because the input file is already -listed in the gr file that is now used as a custom configuration:

    -
    $ pdfgetx3 -c ni300mesh_300k_nor_1-5.gr --plot=fq,gr
-
-WARNING:ni300mesh_300k_nor_1-5.gr already exists.
-WARNING:Use "--force=yes" or "--force=once" to overwrite.
-
-Variables related to PDF processing:
-
-pdfgetter    -- PDFGetter used for calculation.
-config       -- configuration data used by PDFGetter.
-                See config.inputfiles for a list of inputs.
-iraw         -- matrix of input raw intensities with 2 rows per file.
-iq sq fq gr  -- intermediate results per each input file stored
-                as matrix rows.
-
-Functions:
-
-tuneconfig   -- dynamically tune configuration variables.
-processfiles -- process specified data files.
-clearsession -- clear all elements from the inputfiles, iraw,
-                iq, sq, fq and gr variables.
-plotdata     -- plot all or selected columns from a text data file.
-loaddata     -- load all or selected columns from a text data file.
-findfiles    -- search for files matching the specified patterns.
-
-Use "%pdfgetx3" for a fresh run without exiting IPython.
-In [1]:
-
    -
    -

    This will open a plot figure similar to

    -_images/nickelfqgr.png -

    Because of the interactive mode implied by plotting, -the program enters an IPython session. -The IPython environment is preloaded with several extra functions -and variables related to the PDF processing. For example, the -config variable stores all the configuration parameters, -and its content can be displayed with the print() -function as

    -
    In [1]: print(config)
-
-configfile = ni300mesh_300k_nor_1-5.gr
-configsection = DEFAULT
-dataformat = twotheta
-...
-qmax = 26.0
-...
-
    -
    -

    The processfiles() function allows to redo the -whole calculation and plotting process for additional input files or -for new parameter values. To plot the F(Q) and G(r) -curves calculated at Qmax = 22 Å-1, we can call -processfiles() and pass it a keyword argument for -the new qmax as follows:

    -
    In [2]: processfiles(qmax=22)
-
-# the qmax parameter was updated to a new value, thus
-In [3]: config.qmax
-Out[3]: 22
-
    -
    -

    There should be now two lines in each plot axis corresponding to -the results at Qmax equal 26 and 22 Å-1. To exit the program, -type exit().

    -
    -
    -

    processing from scratch

    -

    We have already encountered the command-line option -c -for specifying a custom configuration file. A special argument “NONE”, -will make pdfgetx3 ignore any configuration files and start up in a -default state. We can use this feature to process the nickel PDF as if -we did not have any configuration file:

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi
-
-WARNING:Nothing to do, use "-t" or "--plot" options.
-ERROR:Configuration error: wavelength not specified.
-ERROR:See "--help" for more hints.
-
    -
    -

    There is an error, for the wavelength is necessary to convert -the scattering angle 2Θ to momentum transfer Q. The -X-ray wavelength was 0.142774 Å, which can be passed with the --w, --wavelength option:

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774
-
-...
-ERROR:Configuration error: Chemical composition not known.
-ERROR:See "--help" for more hints.
-
    -
    -

    There is still an error. The PDF calculation needs an average -X-ray scattering factor of the material, which is obtained from -sample chemical composition. The composition can be specified -with the --composition option. The example -below uses a “\” character to indicate the command continues -on the next line. Such syntax works in Unix terminals, but -on Windows the command has to be typed all on a single line:

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \
-           --composition=Ni
-
-WARNING:Nothing to do, use "-t" or "--plot" options.
-...
-
    -
    -

    There was no error message this time, but the program complains -about a lack of action. The pdfgetx3 program does not write any results -unless instructed by the -t, --outputtypes option. -The outputtypes option recognizes the following result types: -“iq”, “sq”, “fq”, “gr”. One or more of these type strings, -separated by a comma, can be included with the --t option, which will produce the corresponding -output files. An empty string, such as -t "", or -t NONE -may be used to clear any outputtypes defined in the configuration file, -and avoid the unseemly file-exists warnings.

    -

    At this point, we will not write any output files, but will use the ---plot option to display the calculated curves. The ---plot accepts the same arguments as outputtypes, so to -display the F(Q) and G(r) curves we shall run

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \
-           --composition=Ni --plot=fq,gr
-
-WARNING:qmaxinst reset to last nonzero point qmaxinst=28.0865680161
-WARNING:qmax reset to the data boundary qmaxinst=28.0865680161
-
    -
    -

    which should open the following plot window:

    -_images/nickelfqgrnoisy.png -

    The graphs look terrible. The PDF is very noisy and the F(Q) curve -shows a sudden break at about 27 Å-1. What happened? The powder -intensities are inaccurate at a very top of the detector angular range. -The interactive session is setup with -iraw, iq, sq, -fq, gr -variables for the original raw data and intermediate results. We -are going to plot the “iq” variable that has the input intensities -resampled on the Q grid. The matplotlib function -clf() clears the figure, -the iq variable is a two-row matrix with Q and I rows, and the -axis() -function lets us zoom to a given range:

    -
    In [1]: clf()
-In [2]: plot(iq[0], iq[1])
-Out[2]: [<matplotlib.lines.Line2D at 0x3e20f50>]
-In [3]: axis([20, 29, 0, 3000])
-Out[3]: [20, 29, 0, 3000]
-
    -
    -

    The graph shows a sudden drop in the raw intensities at 27 Å-1. -The qmaxinst variable defines a Q cutoff for a meaningful -instrument intensities and, to be on a safe side, we are going to set -it to 26.5 Å-1

    -
    In [4]: processfiles(qmaxinst=26.5)
-WARNING:qmax reset to the data boundary qmaxinst=26.5
-
    -
    -

    The updated curves looks reasonable without any oscillations and -breakpoints. The tuneconfig() function provides a -GUI-driven way for visualizing the processing parameters and their -effect on the results. Type tuneconfig() to execute the function, -which should open a new window with several sliders. Try to move -different sliders and see how do the F(Q) and G(r) curves change. -The rpoly parameter controls the degree of data-correction -polynomial and is an approximate low-r bound of reliable G -values. Once the parameters are tuned, they may be set to -exact values. We will also turn on the writing of the G(r) -curve and save it to an output file nicmd.gr:

    -
    In [14]: config.qmax = 26
-In [15]: config.outputtypes = 'gr'
-In [16]: config.output = 'nicmd'
-In [17]: processfiles()
-
    -
    -
    -
    -
    -

    Platinum X-ray series

    -

    PDFgetX3 has been designed to handle large series of data files. -With the fast area-detectors it is easy to measure hundreds of X-ray -patterns in a time or temperature series. Normally, these input -files need to be entered as command line arguments to the pdfgetx3 -program. This is usually no problem with Unix-like shells, which -expand filename patterns to a list of matching files. -However, such file generation is in general not available on Windows. -The input file names tend to include scan numbers which are useful -for selecting desired data, yet even with Unix shells it is -difficult to match a range of scan numbers -(z-shell being a notable exception).

    -
    -

    matching input files

    -

    The pdfgetx3 program includes a built-in function for finding -a set of input files. The command line arguments are normally taken as -input file names. However, if the -f, --find option is -present, the arguments are understood as patterns and the program looks -for files that match ALL of them. Another option --l, --list makes pdfgetx3 print out the matching files -without any other action, which can be used to verify if the patterns -match intended files.

    -

    We will try out this file search on platinum example files. Open a -terminal and navigate to the Pt directory. There should be a -series subdirectory with 6 chi files indexed from 903 to 908. -At first, let’s stay in the Pt directory and run the following -command

    -
    $ pdfgetx3 --list --find
-
-Pt_bulk-00055-pdfgetx2.gr
-Pt_bulk-00055-pdfgetx3.gr
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-pdfgetx3.cfg
-plotpdfcomparison.py
-
    -
    -

    Without any patterns the file search matches all files in the current -directory. Now let’s try to add name patterns. There are few special -patterns, for example ^ matches at the beginning of the filename, -$ at the end and <N-M> matches a range of integer values from -N to M. The patterns containing ^$<> need to be quoted as -these characters have special meaning in the shell. Here are some -examples how it works.

    -

    Filenames containing “y”:

    -
    $ pdfgetx3 --list --find y
-empty_capillary-00032.chi
-plotpdfcomparison.py
-
    -
    -

    Filenames that containing both “y” and “chi”, here we use the -options --list and --find in an abbreviated -form -l and -f:

    -
    $ pdfgetx3 -lf y chi
-empty_capillary-00032.chi
-
    -
    -

    Filenames that start with “e”:

    -
    $ pdfgetx3 --list --find "^e"
-empty_capillary-00032.chi
-
    -
    -

    Filenames that contain character “2”:

    -
    $ pdfgetx3 --list --find 2
-Pt_bulk-00055-pdfgetx2.gr
-empty_capillary-00032.chi
-
    -
    -

    Filenames that contain numeric value “2”:

    -
    $ pdfgetx3 -lf "<2>"
-Pt_bulk-00055-pdfgetx2.gr
-
    -
    -

    The special argument + starts a new group of patterns to -generate extra files when they cannot be all covered by -a single set of patterns. For example, to match files that -contain contain both “bulk” and “chi” substrings and then -also those that have “empty” and “chi” in their names, use:

    -
    $ pdfgetx3 -lf bulk chi + empty chi
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-
    -
    -

    When pattern groups overlap the resulting matches are -made unique and each file is listed only once

    -
    $ pdfgetx3 -lf bulk chi + chi
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-
    -
    -
    -
    -

    data search path

    -

    Each group of PDFgetX3 patterns can have one entry containing -forward slash “/” to specify a non-current path that is searched -for input files. The path specification affects the current and -the following pattern groups unless they provide their own path. -The chi files numbered “903” to “905” and “908” from the -series subdirectory can be therefore matched using

    -
    $ pdfgetx3 -lf series/ "<903-905>" + 908
-series/Pt_bulk_ramp03-00903.chi
-series/Pt_bulk_ramp03-00904.chi
-series/Pt_bulk_ramp03-00905.chi
-series/Pt_bulk_ramp03-00908.chi
-
    -
    -

    The current directory can be selected using ./

    -
    $ pdfgetx3 -lf series/ 903 + ./ bulk chi
-series/Pt_bulk_ramp03-00903.chi
-Pt_bulk-00055.chi
-
    -
    -

    When additional pattern groups contain only the path -argument, they reuse the existing set of patterns. The -“.chi”-ending files in the current and series -directories can be thus found using

    -
    $ pdfgetx3 -lf ".chi$" + series/
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-series/Pt_bulk_ramp03-00903.chi
-series/Pt_bulk_ramp03-00904.chi
-series/Pt_bulk_ramp03-00905.chi
-series/Pt_bulk_ramp03-00906.chi
-series/Pt_bulk_ramp03-00907.chi
-series/Pt_bulk_ramp03-00908.chi
-
    -
    -
    -
    -

    output file names

    -

    By default the output files are saved in the current directory. The -output path, can be changed with the -o, --output option. -The -o recognizes several tokens that are replaced with -parts of the input file name, for example, “@b” expands to an -extension-stripped base name. In similar faction, “@o” is replaced -with the output type extension. Thus to generate PDFs for all files -in the series directory and save them in the -series-gr subfolder do

    -
    $ pdfgetx3 --find series/ "<900-910>.chi" --output=series-gr/@b.@o
-
    -
    -

    The extension “.@o” is automatic when not included anywhere in the -output file name. Thus to process the Pt series at Qmax = 18 Å-1 -while saving the results in the same folder, but with a “_qmax18” suffix -in their filenames do

    -
    $ pdfgetx3 --find series/ "<900-910>.chi" --qmax=18 -o series-gr/@b_qmax18
-
    -
    -

    For input file Pt_bulk_ramp03-00903.chi the -o option -above expands to output path series-gr/Pt_bulk_ramp03-00903_qmax18.gr. -The series-gr directory should now contain 12 “gr” files, -6 of them processed at Qmax = 27 Å-1 as given by configuration -file and 6 others processed at Qmax = 18 Å-1.

    -
    -

    See also

    -

    -o, --output for a list of output tokens

    -
    -
    -
    -
    -

    Interactive tuning of parameters

    -

    One of the most powerful features of PDFgetX3 is the ability to tune -PDF processing parameters in an interactive mode and immediately -visualize their effect on the results. To demonstrate this feature, -navigate to the Ni directory in the shell and process -the nickel PDF while plotting the F(Q) and G(r) curves. -Because of plotting the program will open an interactive IPython -session. The tuning mode can be then entered by calling the -tuneconfig() -function from the IPython environment

    -
    $ pdfgetx3 --plot=fq,gr ni300mesh_300k_nor_1-5.chi
-...
-In [1]: tuneconfig()
-
    -
    -

    The -tuneconfig() -function will by default add a second set of live lines -for the plotted curves and open a GUI dialog with sliders for the -tunable process parameters. Changing any slider would immediately -recalculate the PDF and update live lines in the plot.

    -_images/tunenickelfqgr.png -

    The constant data scale check-box rescales the result curves to a -constant maximum value. This is useful for assessing if a parameter -change produces different curve shape or if it just rescales the -results. The tunable parameters are described in the -PDF parameters section. -Only the active parameters are displayed in the tuneconfig GUI, -thus there would be no slider for the bgscale parameter -if PDF has been processed without any background data.

    -

    By default the -tuneconfig() -function displays the same curves as -specified by the --plot option, however it can be -configured to show arbitrary intermediate results or even visualize -selected steps in the PDF processing. We shall demonstrate this by -showing a live-plot of the polynomial correction together with the final -PDF. At first, we shall use the describe() method of the -pdfgetter() object to print out the chain of -transformations involved in the PDF processing and obtain a reference to -the transformation object t4 that applies the polynomial correction. -The transformation object can be then included in a list of plot -identifiers that are passed to the tuneconfig() function

    -
    $ pdfgetx3 -i ni300mesh_300k_nor_1-5.chi
-...
-Use "%pdfgetx3" for a fresh run without exiting IPython.
-
-In [1]: fig, ax = subplots(2)
-In [2]: pdfgetter.describe()
-0   TransformTwoThetaToQA
-    convert x data from twotheta to Q in 1/A
-1   TransformQGridRegular
-    Remove the data outside the (qmin, qmaxinst) range
-2   TransformBackground
-    subtract background intensity
-3   TransformXrayASFnormChris
-    scale and normalize intensities by x-ray scattering factors
-4   TransformSQnormRPoly
-    Normalize S(Q) by fitting a polynomial
-5   TransformSQToFQ
-    Convert S(Q) to F(Q).
-6   TransformFQgrid
-    Resample F(Q) to a regular grid suitable for FFT
-7   TransformFQToGr
-    Convert F(Q) to G(r).
-In [3]: t4 = pdfgetter.getTransformation(4)
-In [4]: tuneconfig([t4, 'gr'], axeslist=ax)
-In [5]: ax[0].legend(loc=2)
-
    -
    -

    The subplots() function above -is to create a new figure with 2 axes on top of each other. -Overall, the code above should display the following plot -and a GUI window:

    -_images/tunenickelt4gr.png -

    The tuning can be finished by clicking the Done button or closing the -tuneconfig GUI window. The parameter values can be thereafter adjusted -to a rounded values by setting an attribute of the config -object, for example:

    -
    In [5]: config.bgscale = 1.5
-
    -
    -

    Finally, to save the new results, we shall first confirm -outputtypes have been correctly set and then use the -processfiles() function to redo the calculations, plots and -data output for the updated configuration. Note that the -processfiles() function accepts keyword arguments for -configuration parameters. This is used at line In [8] to -turn on the force flag and is in effect a shortcut -for an extra config.force = True statement.

    -
    In [6]: config.outputtypes
-Out[6]: ['gr']
-In [7]: processfiles()
-WARNING:ni300mesh_300k_nor_1-5.gr already exists.
-WARNING:Use "--force=yes" or "--force=once" to overwrite.
-In [8]: processfiles(force=True)
-
    -
    -

    ni300mesh_300k_nor_1-5.gr was successfully saved at an -updated configuration for there were no warnings after the last call.

    -
    -
    -

    Neutron PDF

    -

    This example illustrates PDF extraction from -neutron powder data using pdfgetn3. -Navigate to the n-Sapphire directory in the shell. -The sapphire755.dat file contains powder diffraction data from -sapphire (α-Al2O3) -measured at the constant-wavelength PEARL instrument -at the Delft University of Technology. -The pdfgetn3.cfg configuration file specifies -processing parameters such as wavelength, -twothetazero, composition, and mode.

    -

    To extract the sapphire neutron PDF run

    -
    $ pdfgetn3 --verbose=info sapphire755.dat
-
-INFO:applying pdfgetn3 defaults
-INFO:set config.mode = neutron
-INFO:searching for default config file /home/user/.pdfgetn3.cfg
-INFO:searching for default config file .pdfgetn3.cfg
-INFO:searching for default config file pdfgetn3.cfg
-INFO:loaded default config file pdfgetn3.cfg
-INFO:reset config.twothetazero = 0.0
-INFO:parsing config file section [DEFAULT]
-INFO:set config.dataformat = twotheta
-INFO:set config.backgroundfile =
-INFO:set config.outputtypes = fq, gr
-INFO:set config.mode = neutron
-INFO:set config.wavelength = 1.0989
-INFO:set config.twothetazero = -0.38
-INFO:set config.composition = Al2O3
-INFO:set config.qmaxinst = 11.2
-INFO:set config.qmax = 11.2
-INFO:set config.rmin = 0.0
-INFO:set config.rmax = 20.0
-INFO:set config.rstep = 0.01
-INFO:finished parsing config file
-INFO:processing command line options
-INFO:set config.verbose = info
-INFO:finished with command line options
-INFO:using 1 input files from the command line.
-INFO:configuring PDFGetter mode 'neutron'
-INFO:calling config_neutron
-INFO:started PDF processing.
-INFO:processing 'sapphire755.dat'
-INFO:resolved output file '' as 'sapphire755.fq'
-INFO:written outpufile sapphire755.fq
-INFO:resolved output file '' as 'sapphire755.gr'
-INFO:written outpufile sapphire755.gr
-INFO:elapsed time: 0.097
-
    -
    -

    This will produce two files sapphire755.fq, sapphire755.gr -for the F(Q) and G(r) functions. -To compare them with expected results use

    -
    $ plotdata sapphire755-expected.fq sapphire755.fq
-$ plotdata sapphire755-expected.gr sapphire755.gr
-
    -
    -
    -
    -

    Fit twothetazero

    -

    For a good quality PDF it is essential to use powder patterns with -accurate values of Q. Some instruments may produce spectra with -a slightly offset scattering angle 2Θ which -causes inaccurate Q and a noticeably worse PDF. -In this example we fit a constant-wavelength neutron PDF from nickel -together with the twothetazero correction parameter for -diffractometer offset. -The procedure can be used to calibrate the zero correction from -a standard sample and then use it for subsequent PDF extractions. -The protocol can be also applied to fit zero correction in -a full-fledged PDF refinement in case -the zero offset may change for different samples.

    -

    This tutorial requires either Linux or Mac OS X platforms, -because the PDF fitting is conducted with -diffpy.cmi, -which is not yet available for Windows. -If diffpy.cmi is not yet installed, -we recommend to use Anaconda Python and set up a dedicated -Anaconda environment nbcmi for this tutorial. -This can be accomplished using the following steps:

    -
    $ conda create -n nbcmi -c diffpy python=2 diffpy-cmi
-$ conda activate nbcmi
-$ python -m easy_install path/to/diffpy.pdfgetx-VERSION.egg
-
    -
    -

    When these prerequisites are in place, -change to the n-twothetazero-fit directory -and open the self documented Jupyter notebook as follows

    -
    $ jupyter notebook fit-twothetazero.ipynb
-
    -
    -

    The notebook sets up and executes several PDF refinements and -compares the results from fits on uncorrected data and with -a fitted twothetazero. -After running all cells the notebook should produce similar graphs -as in the figure below.

    -
    -_images/twothetazerofit.svg

    Refinement of nickel neutron PDF for (a) uncorrected data -and (b) with a refined zero correction. -The extracted PDFs are plotted as blue circles, -simulated PDFs as red lines and -the difference is plotted offset in green below.

    -
    -

    The final refined zero offset in the notebook should be approximately -0.36°. -The correction produces experimental PDF with a remarkably better fit -residual Rw which is lowered from (a) 0.18 to (b) 0.05.

    -
    -
    - - -
    -
    -
    - -
    -
    -
    -

    Navigation

    - -
    - - - - diff --git a/static_root/doc/pdfgetx/2.1.0/PDFgetXNS3_manual.pdf b/static_root/doc/pdfgetx/2.1.0/PDFgetXNS3_manual.pdf deleted file mode 100644 index b74f204e..00000000 Binary files a/static_root/doc/pdfgetx/2.1.0/PDFgetXNS3_manual.pdf and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.1.0/_images/nickelfqgr.png b/static_root/doc/pdfgetx/2.1.0/_images/nickelfqgr.png deleted file mode 100644 index 3fbc12de..00000000 Binary files a/static_root/doc/pdfgetx/2.1.0/_images/nickelfqgr.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.1.0/_images/nickelfqgrnoisy.png b/static_root/doc/pdfgetx/2.1.0/_images/nickelfqgrnoisy.png deleted file mode 100644 index caab8cf3..00000000 Binary files a/static_root/doc/pdfgetx/2.1.0/_images/nickelfqgrnoisy.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.1.0/_images/tunenickelfqgr.png b/static_root/doc/pdfgetx/2.1.0/_images/tunenickelfqgr.png deleted file mode 100644 index 14accde4..00000000 Binary files a/static_root/doc/pdfgetx/2.1.0/_images/tunenickelfqgr.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.1.0/_images/tunenickelt4gr.png b/static_root/doc/pdfgetx/2.1.0/_images/tunenickelt4gr.png deleted file mode 100644 index c95278cd..00000000 Binary files a/static_root/doc/pdfgetx/2.1.0/_images/tunenickelt4gr.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.1.0/_images/twothetazerofit.svgz b/static_root/doc/pdfgetx/2.1.0/_images/twothetazerofit.svgz deleted file mode 100644 index 80e48d71..00000000 Binary files a/static_root/doc/pdfgetx/2.1.0/_images/twothetazerofit.svgz and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.1.0/_sources/files.rst.txt b/static_root/doc/pdfgetx/2.1.0/_sources/files.rst.txt deleted file mode 100644 index edc63d96..00000000 --- a/static_root/doc/pdfgetx/2.1.0/_sources/files.rst.txt +++ /dev/null @@ -1,102 +0,0 @@ -Files used in PDF extraction -======================================================================== - -.. include:: abbreviations.txt -.. _my-configfile: -.. program:: pdfgetx3 - -Configuration file ------------------------------------------------------------------------- - -Configuration files may define the PDF processing parameters. -By default, the :program:`pdfgetx3` program attempts to read -:file:`.pdfgetx3.cfg` file from the user HOME directory, -then :file:`.pdfgetx3.cfg` and :file:`pdfgetx3.cfg` files -from the current working directory. -If configuration file has a different name, it needs to be specified -with the :option:`-c, --config <-c>` option. -The :program:`pdfgetn3` program works in the same way, -except it checks for configuration files -:file:`~/.pdfgetn3.cfg`, :file:`.pdfgetn3.cfg` and :file:`pdfgetn3.cfg`. - -The easiest way of creating a configuration file is to generate -a template content using the :option:`--createconfig` option as :: - - pdfgetx3 --createconfig=test.cfg - -and then change the generated test.cfg file in your favorite text -editor. The configuration file follows a simple "varname=value" syntax, -any lines starting with "#" are ignored as comments. - -The configuration file has several sections marked as ``[SECTIONNAME]``. -The ``[DEFAULT]`` section is mandatory and it contains the default -global settings. Any other sections are optional and they are applied -only when selected with the :option:`-s, --section <-s>` option on the -command line. Thus :: - - pdfgetx3 --config=test.cfg --section=nacl - -would read the parameters from the ``[nacl]`` section after reading the -defaults. Having several sections in the configuration -file is useful when there are multiple measurements that share most of -the parameters, but differ in a few of them, for example in chemical -composition. The configuration file can then contain sections per each -sample that define only the composition, while all other parameters are -specified just once in the global DEFAULT section. - - -Input files ------------------------------------------------------------------------- - -PDFgetX3 and PDFgetN3 accept input powder diffraction data -in the form of two-column text file, -where the first column x is either the scattering angle -|twotheta| in degrees, momentum transfer *Q* in inverse nanometers or *Q* -in inverse ångströms. The second column y contains the corresponding -scattered intensities normalized per unit solid angle. The actual type -of the x-values is identified by the :confval:`dataformat` parameter. -The input files may contain header with comments or metadata, and the -actual data are read from the first long section of numerical values. - -The input files are usually passed as command-line arguments to -:program:`pdfgetx3` or :program:`pdfgetn3` programs and must be paths -accessible from the current working directory. - -Input files can be also defined by setting the :confval:`inputfile` -value in the configuration file. The :option:`-d, --datapath <-d>` -option can be then used to provide additional data directories to -search for these inputs and for the :confval:`backgroundfile`. -This is to support configuration files located in a different -directory than the data. - -When the :option:`--find <-f>` option is active, the pdfgetx3 arguments -are understood as filename patterns and the input files are found -in the current or specified directory. - - -Output files ------------------------------------------------------------------------- - -PDFgetX3 and PDFgetN3 can produce up to four different output data files: - -* .iq -- |IQ|, the background-corrected - intensities sampled on a regular *Q*-space grid in inverse ångströms, - -* .sq -- |SQ|, the total scattering structure function, - with intensities normalized by average scattering factors and - corrected by a polynomial fit, - -* .fq -- |FQ|, the reduced structure function equal to *Q*\ (|SQ| - 1), - -* .gr -- |Gr|, the resultant PDF, where the first column is the - separation *r* in ångströms and the second is the function *G* in - Å\ :sup:`-2`. - -You can specify what output files should be produced by setting the -:confval:`outputtypes` parameter in the configuration file or by -passing the :option:`-t, --outputtypes <-t>` on the command line. - -The header of all output files contains the parameter values that were -used in the calculation and thus it is by itself a valid configuration -file. When passed as an argument to the :option:`--config <-c>` option, -the PDFgetX3 will reproduce the previous calculation. diff --git a/static_root/doc/pdfgetx/2.1.0/_sources/index.rst.txt b/static_root/doc/pdfgetx/2.1.0/_sources/index.rst.txt deleted file mode 100644 index c7bf373e..00000000 --- a/static_root/doc/pdfgetx/2.1.0/_sources/index.rst.txt +++ /dev/null @@ -1,38 +0,0 @@ -.. PDFgetX3 documentation master file, created by - sphinx-quickstart on Tue Sep 21 18:35:11 2010. - You can adapt this file completely to your liking, - but it should at least contain the root `toctree` directive. - -######################################################################## -diffpy.pdfgetx -######################################################################## - -User manual for PDFgetX3, PDFgetN3, PDFgetS3 and Python package diffpy.pdfgetx. - -| Release |release| -| |today| - -======================================================================== -Table of contents -======================================================================== - - -.. toctree:: - :maxdepth: 2 - - intro - install - quick-start - tutorial - files - interact - options - plotdata - release - -======================================================================== -Indices -======================================================================== - -* :ref:`genindex` -* :ref:`search` diff --git a/static_root/doc/pdfgetx/2.1.0/_sources/install.rst.txt b/static_root/doc/pdfgetx/2.1.0/_sources/install.rst.txt deleted file mode 100644 index 5545f943..00000000 --- a/static_root/doc/pdfgetx/2.1.0/_sources/install.rst.txt +++ /dev/null @@ -1,135 +0,0 @@ -Installation -======================================================================== - -.. include:: abbreviations.txt - -Software requirements ------------------------------------------------------------------------- - -This software is written in Python programming language, therefore -you must have Python 3.7, 3.6, 3.5 or 2.7 installed. In addition, -the following third-party Python libraries are also required: - -* pip - Python package installer -* setuptools - tools for installing Python packages -* six - Python 2 and 3 compatibility library -* NumPy - library for scientific computing with Python -* matplotlib - Python plotting library -* IPython - enhanced interactive Python shell - -Standard Python releases can be obtained from -https://www.python.org/downloads. -The third-party libraries can be found at the -`Python Package Index `__ -or using any Internet search engine. - -Another more convenient option is to obtain one of the science-oriented -Python distributions such as -`Anaconda Python`_, -`Enthought Canopy `_ or -`PythonXY `_, -These distributions already include all the necessary libraries, so the -required Python software can be all installed in one step. - -On Linux operating systems the third-party libraries are usually -included in a system software repository. For example on an -Ubuntu Linux computer the software dependencies can be all installed -with a single shell command :: - - sudo apt-get install \ - python3-pip python3-setuptools python3-six \ - python3-numpy python3-matplotlib ipython3 - -This may be, of course, as well accomplished using the GUI -driven Synaptic package manager. Other Linux -distributions may use different software management tools, -but the names of the necessary packages should be very similar -to those above. - -On Windows operating system, it may be necessary to add the -``C:\Python37`` directory and the scripts directory -``C:\Python37\Scripts`` to the system :envvar:`!PATH`. Some Python -distributions already do so as a part of their installation process. The -easiest way to check is to start the :program:`Command Prompt`, type -there ``python`` and see if this starts the Python interpreter. - - -Installation ------------------------------------------------------------------------- - -The diffpy.pdfgetx software is distributed as a Python wheel file, -which can be obtained from the -`Columbia Technology Ventures -`__. -Once all the required software is in -place, start the command prompt on Windows or a Unix terminal on Linux -or Mac, navigate to the directory that contains the wheel file and -execute the following command:: - - pip install ./diffpy.pdfgetx-VERSION.whl - -Here VERSION needs to be replaced to match the actual filename. It is -critical that pip installer is from a supported Python version otherwise -the program would not work. On Linux and Mac operating systems the installation may need to run with root user privileges, for example, by prepending ``sudo`` to the command line above. If root access is not available, use the ``pip install`` options :option:`!--user` or :option:`!--prefix` to install the software to a user-writable directory. - -The package provides three programs for PDF conversion, :program:`pdfgetx3`, :program:`pdfgetn3` and :program:`pdfgets3`. To check if they are correctly installed run :: - - pdfgetx3 --version - pdfgetn3 --version - pdfgets3 --version - -This should display the software version, which should agree -with the VERSION string in the wheel package name. -The installation also includes a :program:`plotdata` -command for an easy plotting of text data files. To verify -if plotdata works, run the ``plotdata --version`` command. -Finally, a comprehensive test of the installed software can -be executed using :: - - python -m diffpy.pdfgetx.tests.run - -.. note:: - - Older versions of diffpy.pdfgetx use Python egg format - instead of Python wheel. - To install these use the easy_install command as follows:: - - python -m easy_install ./diffpy.pdfgetx-VERSION.egg - -.. index:: %pdfgetx3 IPython magic -.. index:: %pdfgetn3 IPython magic -.. index:: %pdfgets3 IPython magic - -IPython magic command ------------------------------------------------------------------------- - -These instructions are intended for `IPython`_ users who would like to -integrate PDFgetX3, PDFgetN3 and PDFgetS3 into their IPython environment. If -you don't plan to customize IPython in such way you can safely skip -this paragraph. - -When pdfgetx3 or pdfgetn3 or pdfgets3 is run in interactive mode, it start -IPython interactive shell and define an extra ``%pdfgetx3``, ``%pdfgetn3`` and ``%pdfgets3`` magic commands within the IPython session. The IPython -magic commands are not valid Python code, but work in a similar -fashion as standard shell commands. The ``%pdfgetx3``, ``%pdfgetn3`` and ``%pdfgets3`` magics can be thus used with the same options and arguments as if run from the shell. This is useful for processing more files, while -preserving all plots or variables that were already created -in an IPython session. - -The ``%pdfgetx3``, ``%pdfgetn3`` and ``%pdfgets3`` magic commands can be defined -permanently so they are available in all IPython sessions. To set -this up - -#. find the ``profile_default/ipython_config.py`` file and open it - in a text editor. If that file does not exists, - create it first by executing :: - - ipython profile create - -#. navigate to the paragraph that contains the - :py:data:`!c.InteractiveShellApp.extensions` and add there - the following line :: - - c.InteractiveShellApp.extensions = ['diffpy.pdfgetx.ipy_magics'] - - There must be no leading indent, i.e., the text must start at the - very first column. diff --git a/static_root/doc/pdfgetx/2.1.0/_sources/interact.rst.txt b/static_root/doc/pdfgetx/2.1.0/_sources/interact.rst.txt deleted file mode 100644 index 0d4fb746..00000000 --- a/static_root/doc/pdfgetx/2.1.0/_sources/interact.rst.txt +++ /dev/null @@ -1,154 +0,0 @@ -Interactive mode -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 -.. py:currentmodule:: _interactive_ - -The interactive mode is activated by using either the -:option:`-i, --interact <-i>` option or a non-empty -:option:`--plot <-p>` option. In the interactive mode -the program starts an `IPython`_ interactive shell and pre-loads several -functions and variables related to the PDF calculation. It also defines -IPython commands ``%pdfgetx3`` and ``%pdfgetn3``, which can be used with -the same syntax as the :program:`pdfgetx3` and :program:`pdfgetn3` in -system shell. -The interactive session is also initialized with all functions from the -:py:mod:`matplotlib.pyplot` module for convenient plotting. -The functions and variables related to PDF processing are: - -.. py:function:: pdfgetter(x=None, y=None, filename='', **kwargs) - - Instance of the :py:class:`!PDFGetter` class which serves as a - low-level function that calculates the PDF. This is a callable - object, which takes as an argument a pair of input arrays for - (*Q*, intensity) or (|twotheta|, intensity) depending on - :confval:`dataformat`. It can be also called with a keyword - argument ``filename=FILE``, which would read the input arrays - from the specified file. When called with no arguments, - it calculates PDF from the last input data. - - :parameters: - * **x** (*numpy.ndarray, optional*) -- - The *Q* or |twotheta| values in powder diffraction pattern. - - * **y** (*numpy.ndarray, optional*) -- - The scattered intensities in powder diffraction pattern - - * **filename** (*str, optional*) -- - The text data file for loading the `x`, `y` values when - they are not specified. - - * **kwargs** (*misc, optional*) -- - Extra keyword arguments that are applied to - the :data:`!config` object, for example ``qmax=20``. - - :return: - A pair of output arrays *(r, G)*. - -.. interactvar:: config - - Instance of the :py:class:`!PDFConfig` class that stores the - :ref:`parameters and input files ` for the program. - Use ``print(config)`` to display the current configuration values. - This is the same object as :data:`!pdfgetter.config`. Configuration - may be changed by setting a respective attribute of the - :interactvar:`!config` object, for example:: - - In [1]: config.qmax = 21 - - The :py:data:`!config` values may be also changed by calling the - :py:func:`pdfgetter` or :py:func:`processfiles` function with a - corresponding keyword argument, for example - ``processfiles(qmax=20, force="once")``. - -.. interactvar:: iraw - iq - sq - fq - gr - - These variables are assigned the input raw intensities and the - intermediate results, stored as matrix rows. The matrix rows - correspond to twotheta1, intensity1, twotheta2, intensity2, etc. - Because matrices are iterated row first, the raw intensities - from all input files can be plotted with the matplotlib plot - function as ``plot(*iraw)``. - - These variables should be considered read-only and are reset - with subsequent PDF calculations. - -.. py:function:: tuneconfig(plotids=None, pdfgetter=None, axeslist=None) - - Show a GUI dialog for interactive tuning of configuration variables. - - :arg plotids: - The string or iterable that specify what interactive plots should be - tuned. By default the same as ``config.plot``. It can be also an - integer index or name of a transformation in :py:func:`pdfgetter` or - a reference to a :py:class:`!Transformation` object. - - :arg pdfgetter: - The optional :py:class:`!PDFGetter` object to be tuned. - This is by default the interactive :py:func:`!pdfgetter` object. - - :arg axeslist: - An optional list of matplotlib Axes for showing interactive plots. - When None, use ``subplot(N, 1, i)`` to create any necessary axes. - - .. note:: - - Changes from :py:func:`!tuneconfig` apply only to the configuration - and results in memory. Use the :py:func:`processfiles` function - to save them to disk. - - .. seealso:: :ref:`my-tuneconfig` tutorial - -.. py:function:: processfiles(filename=None, **kwargs) - - Process all input files again with the current configuration values. - This is a higher-level function than :py:func:`pdfgetter`, as - it also saves output files and produces plots as specified by the - :interactvar:`config` object. - - :arg filename: - One or more input files to be converted to PDFs and saved or - plotted according to the :py:data:`!config` settings. Use the - previous list of input files when not specified. - - :arg kwargs: - An optional keyword arguments to set for the :py:data:`!config` - object, for example ``(force="once", qmax=18)``. - - This function updates the :interactvar:`config.inputfiles ` - list and the :interactvar:`iraw`, :interactvar:`iq`, - :interactvar:`sq`, :interactvar:`fq` and :interactvar:`gr` - interactive variables. - -.. py:function:: clearsession() - - Clear all elements from the :interactvar:`config.inputfiles ` - and also the - :interactvar:`iraw`, :interactvar:`iq`, :interactvar:`sq`, - :interactvar:`fq` and :interactvar:`gr` variables. - - :return: - No return value. - -.. py:currentmodule:: diffpy.pdfgetx -.. autofunction:: loaddata - - This function can be imported from the - :py:mod:`!diffpy.pdfgetx` module. - -.. py:currentmodule:: diffpy.pdfgetx.plotdata -.. autofunction:: plotdata - - This function can be imported from the - :py:mod:`!diffpy.pdfgetx.plotdata` module. - -.. py:currentmodule:: diffpy.pdfgetx -.. autofunction:: findfiles - - This function can be imported from the - :py:mod:`!diffpy.pdfgetx` module. diff --git a/static_root/doc/pdfgetx/2.1.0/_sources/intro.rst.txt b/static_root/doc/pdfgetx/2.1.0/_sources/intro.rst.txt deleted file mode 100644 index a112ee9a..00000000 --- a/static_root/doc/pdfgetx/2.1.0/_sources/intro.rst.txt +++ /dev/null @@ -1,70 +0,0 @@ -Introduction -======================================================================== - -diffpy.pdfgetx is a simple yet powerful software for converting X-ray or -neutron powder diffraction data to atomic Pair Distribution Functions -(PDFs). In addition, it also allows the extraction of PDFs from small-angle -scattering (SAS) data. The software includes three command line programs -PDFgetX3, PDFgetN3 and PDFgetS3 for processing X-ray, -constant-wavelength neutron and small-angle diffraction data -respectively. PDFgetX3, PDFgetN3 and PDFgetS3 can be used in a batch -mode to convert a series of data files without user intervention. The -programs can be also run in an interactive mode that allows to control -process parameters and plot the PDFs and any intermediate results. Users -can interactively tune the PDF processing parameters, visualize their effect on the results and adjust them to their optimum values. The programs are bundled with Python library diffpy.pdfgetx for PDF processing functions, which can be used in custom Python scripts. - - -.. index:: license - -License notice ------------------------------------------------------------------------- - -.. include:: ../../LICENSENOTICE.txt - - -.. index:: authors - -Authors ------------------------------------------------------------------------- - -This code was written by members of the Billinge Group at -Columbia University and Brookhaven National Laboratory including -Pavol Juhás, -Timur Davis, -Chia-Hao (Timothy) Liu, -Christopher Wright, -Christopher Farrow, -Hung Vuong, -Songsheng Tao, -Simon Billinge. - - -.. index:: citations, references - -References ------------------------------------------------------------------------- - -If you use this program for a scientific research that leads -to publication, we ask that you acknowledge use of the program -by citing the following paper in your publication: - - P. Juhás and T. Davis, C. L. Farrow, S. J. L. Billinge - `PDFgetX3: A rapid and highly automatable program for processing - powder diffraction data into total scattering pair distribution - functions `__, - *J. Appl. Crystallogr.* **46**, 560-566 (2013) - -For research publications that use this software to process neutron -diffraction data we ask you to also cite: - - P. Juhás, J. N. Louwen, L. van Eijck, E. T. C. Vogt, - S. J. L. Billinge - `PDFgetN3: atomic pair distribution functions from neutron - powder diffraction data using ad hoc corrections - `__, - *J. Appl. Crystallogr.* **51** (2018) - -For research publications utilising the sasPDF utility, PDFGetS3, we ask you to acknowledge the use of the program by citing following paper in your publication: - - CH Liu, E. Janke, R. Li, P. Juhás, O. Gang, D. V. Talapin, S. J. L. Billinge - `sasPDF: pair distribution function analysis of nanoparticle assemblies from small-angle-scattering data `__. diff --git a/static_root/doc/pdfgetx/2.1.0/_sources/options.rst.txt b/static_root/doc/pdfgetx/2.1.0/_sources/options.rst.txt deleted file mode 100644 index c02220f2..00000000 --- a/static_root/doc/pdfgetx/2.1.0/_sources/options.rst.txt +++ /dev/null @@ -1,370 +0,0 @@ -Options and parameters -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 - -PDFgetX3, PDFgetN3 and PDFgetS3 are very flexible in allowing users to customize -the actions of the program. They have a number of parameters that can -be specified either in configuration file or as command line options. -Here is a complete description of the parameters and options used by -either program. - - -.. Note :: - - The command line options start with a leading "-" and can - be only used as command line arguments when starting the - :program:`pdfgetx3` program. Within configuration file the parameter - names are plain words without any leading dashes. Finally, - parameters can be also set in the interactive mode as attributes of - the :interactvar:`config` object, but the assignments must be valid - Python statements. Here are examples of setting composition of - a processed specimen using each of these forms: - - #. assigned in configuration file:: - - ... - composition = CaTiO3 - ... - - #. set as a command-line option when starting :program:`pdfgetx3` or - :program:`pdfgetn3`:: - - pdfgetx3 --composition=CaTiO3 - - #. set in the IPython interactive mode:: - - pdfgetx3 -i - ... - In [1]: config.composition = "CaTiO3" - - -Program operation ------------------------------------------------------------------------- - -.. option:: -h, --help - - Display a brief usage information with a list of command line options - and exit. - -.. option:: -V, --version - - Display the program version and exit. - -.. option:: --manual - - Open this manual in a Web browser and exit. - -.. option:: -f, --find -.. _my-findpatterns: - - Select input files that match all patterns. The command - line arguments are by default taken as input files. However, - with the :option:`!--find` option they are processed as - file patterns and the matching files are then used as inputs. - The input files are by default searched in the current directory - unless there is a path entry (e.g., :file:`data/`) that - selects a different search path. The search patterns are - interpreted as fixed strings, all of which must be present - in the file name. A single argument ``+`` starts - a new group of patterns to match more files that are not - covered by one set of patterns. Additional pattern - groups reuse the current search path unless they provide - their own path value. Pattern groups containing only - a path entry reuse file patterns from the last group. - When pattern groups overlap the repeated matches are ignored - to make the resulting list of files unique. Files starting - with ``.`` are ignored unless there is ``^.`` pattern - that explicitly matches them. The search - syntax provides the following special patterns: - - .. tabularcolumns:: |l|p{0.75\textwidth}| - - +---------+------------------------------------------------------------+ - | ^ | match at the beginning of the string, i.e., ``^start`` | - | | matches only filenames that start with "start". | - +---------+------------------------------------------------------------+ - | $ | match at the end of string, for example, ``.chi$`` selects | - | | file names ending with ".chi". A ``$`` on its own | - | | matches every string and can be used to select all files. | - +---------+------------------------------------------------------------+ - | | match number *N* preceded by any number of leading zeros, | - | | e.g., ``<7>`` would match in "f7.chi", "f007.chi", but not | - | | in "f77.chi". | - +---------+------------------------------------------------------------+ - | | match an integer range from *N* to *M* inclusive. | - | | The matched number may have one or more leading zeros. | - +---------+------------------------------------------------------------+ - | <7-> | match number 7 or larger. | - +---------+------------------------------------------------------------+ - | <-7> | match number 7 or smaller. | - +---------+------------------------------------------------------------+ - | <-> | match any integer number. | - +---------+------------------------------------------------------------+ - | \+ | start a new pattern group, for example, ``.chi$ + .dat$`` | - +---------+------------------------------------------------------------+ - | / | set search path. An argument containing the ``/`` symbol | - | | is taken as the search path, for example, ``data/`` or | - | | ``./``. Each pattern group may provide its own search | - | | path effective for that and any subsequent pattern group. | - +---------+------------------------------------------------------------+ - - The ``^$<>`` characters are often special to Unix or Windows - command shells, therefore they need to be enclosed in double - quotes (\\") when used on command line. - - .. seealso:: tutorial on :ref:`my-findexamples` - -.. option:: -l, --list - - List all input files and exit. This is useful with the - :option:`!--find` option to verify if input files - are matched as intended. - - -Configuration file options ------------------------------------------------------------------------- - -.. option:: -c CONFIG, --config=CONFIG - - Read custom configuration file after loading the default ones. - Do not load any configuration file when "NONE". - -.. option:: -s NAME, --section=NAME - - Load the custom configuration file section ``[SectionName]`` after - loading the ``[DEFAULT]`` section. This is useful for creating - several configuration variants in a single configuration file. - -.. option:: --createconfig=FILE - - Write template configuration to a new FILE and exit. Write - to the standard output when FILE is "-". - -See also the :ref:`configuration file ` section -for further details. - -.. _my-ioparameters: - -Input and output options ------------------------------------------------------------------------- - -.. confval:: inputfile - - This parameter allows to specify one or more input files in the - configuration file, one file per line. The :confval:`!inputfile` - is only used if no input files were provided on the - :program:`pdfgetx3` or :program:`pdfgetn3` command line. - -.. confval:: dataformat -.. option:: --format=FORMAT - - Format of input files. Available formats are: ``twotheta``, ``QA``, - ``Qnm`` corresponding to a two-column text data where the first - column is either the scattering angle |twotheta| in degrees, *Q* in - inverse ångströms or *Q* in inverse nanometers. - -.. confval:: backgroundfile -.. option:: -b FILE, --background=FILE - - Optional datafile with background intensities from an empty sample - holder. It must be in the same dataformat as other input files. - -.. Note :: - - The following input is only used in ``sas`` mode. - -.. confval:: formfactorfile -.. option:: -ff FILE, --formfactorfile=FILE - - Form factor intensities of the scatterers. This is required for ``sas`` mode. The form factor file is expected to be in two-column format with (Q, f2avg) data or three-column format with (Q, f2avg, favg2) data. The unit of Q is required to be A^-1. - -.. _my-datapath: -.. confval:: datapath -.. option:: -d DATAPATH, --datapath=DATAPATH - - One or more extra directories to be searched for input or - background data files. The :option:`!-d` option can be specified - several times to add more directories, these are prepended in front - of any default value. Within configuration file the datapath - directories have to be listed each on a separate line. - - A special value "NONE" (or "none") clears any previously defined - paths and only the further paths, if any, would be searched for - inputs. - -.. confval:: output -.. option:: -o OUTPUT, --output=OUTPUT - - Output file name, write to the standard output when "-". The - :option:`-t, --outputtypes <-t>` option controls what results are - being saved. Normally the OUTPUT is used as a custom basename for - the output files. The OUTPUT may contain @f, @h, @r, @e, @t, @b, @o - tokens, which are expanded as follows: - - ===== ================== ======================================= - token example definition - ===== ================== ======================================= - @h dir1/dir2 the input file directory or "." - @r dir1/dir2/filename the input path with extension removed - @e dat the input file extension without "." - @t filename.dat the tail component of the input file - @b filename the tail component with extension removed - @o gr the output extension iq, sq, fq or gr - ===== ================== ======================================= - - An empty value works the same as "@b.@o" and saves the data - in the current directory with a proper extension for the - saved results. When "@o" is not present in the OUTPUT, it is - appended as a default filename extension. - -.. confval:: outputtypes -.. option:: -t TYPES, --outputtypes=TYPES - - Result types to be saved, one or more comma separated values. - Supported values are "iq", "sq", "fq", "gr", corresponding to the - |IQ|, |SQ|, |FQ| and |Gr| curves; these are also used as output - file extensions. - - Result files are not written when empty, "none" or "NONE". - -.. confval:: force -.. option:: --force=FORCE - - Overwrite existing output files. By default the output - files are not written if they already exist. Possible values - in a configuration file are "true", "yes", "on", "1" or - "false", "no", "off", "0" or "once". The special value "once" - permits one overwrite and then resets ``config.force`` to - ``False``. Note that in interactive mode the values assigned - to ``config.force`` are converted to Python :py:class:`bool` - unless equal to "once". - - -.. _my-pdfparameters: - -PDF parameters ------------------------------------------------------------------------- - - -.. confval:: mode -.. option:: --mode=STRING - - The PDF conversion mode, i.e., the name of the - :py:func:`.pdfgetter` setup. The available modes correspond - to the radiation type used in powder diffraction experiment and can - be "xray" or "neutron". - -.. confval:: wavelength -.. option:: -w FLOAT, --wavelength=FLOAT - - X-ray wavelength in ångströms. This value is required - for the "twotheta" dataformat in order to convert the scattering - angles |twotheta| to a momentum transfer *Q*. For other data formats - the wavelength is not necessary and may be left undefined. - -.. confval:: twothetazero -.. option:: --twothetazero=FLOAT - - Position of the zero scattering angle in diffractometer degrees. - This parameter corrects for a constant offset in the - measured |twotheta| values. When loading configuration file - it is assumed 0 unless specified otherwise. This parameter - is only effective for the "twotheta" dataformat. - -.. confval:: composition -.. option:: --composition=STRING - - Chemical composition of the sample. Supported formats are - "PbTi0.5Zr0.5O3", "Pb 1 Ti 1/2 Zr 1/2 O 3" or "CH3 (CH2)3 OH". - Space characters are ignored, unit counts can be omitted, but it is - important to use a proper upper and lower case in atom symbols. - Elements can appear several times in the formula, e.g., "CH3 CH3", - and the formula may contain parentheses or fractional - stoichiometries. - -.. confval:: bgscale -.. option:: --bgscale=FLOAT - - Scaling of the background intensities loaded from the - :confval:`backgroundfile`, by default 1. - -.. confval:: rpoly -.. option:: --rpoly=FLOAT - - *r*-limit for the maximum frequency in the |FQ| correction polynomial. - The PDF is unreliable at shorter *r*, however a - very small :confval:`!rpoly` would disable polynomial correction and - give noisy PDF. - Larger values produce closer fits with a higher degree polynomial, - but when too large, they might smooth-out a useful signal in the - data. The default is 0.9. - -.. confval:: qmaxinst -.. option:: --qmaxinst - - The *Q* cutoff for the meaningful input intensities in inverse - ångströms. Some data files may contain trailing zeros - or unreliable intensities at the upper bound of the detector range. - The :confval:`!qmaxinst` defines a threshold for unreliable data. - The parameter is also used as an upper boundary for the polynomial - fit correction of the |SQ| data. - -.. confval:: qmin -.. option:: --qmin - - The lower *Q*-limit for the Fourier transformation of the |FQ| curve - in inverse ångströms. - -.. confval:: qmax -.. option:: --qmax - - The upper *Q*-limit for the Fourier transformation of the |FQ| curve - in inverse ångströms. This is essentially a limit, where sample - signal decays to the level of data noise. - -.. confval:: rmin -.. option:: --rmin=FLOAT - - Lower bound of the *r*-grid for the calculated PDF in ångströms. - -.. confval:: rmax -.. option:: --rmax=FLOAT - - Upper bound of the *r*-grid for the calculated PDF in ångströms. - -.. confval:: rstep -.. option:: --rstep=FLOAT - - Spacing of the *r*-grid for the calculated PDF in ångströms. - - -Other parameters ------------------------------------------------------------------------- - -.. confval:: plot -.. option:: -p TYPES, --plot=TYPES - - Plot the specified results. A comma separated list with one or - more items from "iq", "sq", "fq", "gr". No plot is produced when - empty, "none" or "NONE". Setting this option turns on the - interactive mode. - -.. confval:: interact -.. option:: -i, --interact - - Start an IPython interactive session after processing all files. - Useful for tuning the configuration parameters or interactive - plotting. This is always on when plot option has been set. - See also :doc:`interact` for further details. - -.. confval:: verbose -.. option:: --verbose=VALUE - - Level of detail for the program to report about its actions. - Possible values are "error", "warning", "info", "debug", "all" or an - integer number from 0 to 5. Messages are completely suppressed when - 0, all messages are printed when verbose is 5 ("all") or higher. - This option is useful for diagnostics of any unexpected behavior - in the program. diff --git a/static_root/doc/pdfgetx/2.1.0/_sources/plotdata.rst.txt b/static_root/doc/pdfgetx/2.1.0/_sources/plotdata.rst.txt deleted file mode 100644 index d1c02156..00000000 --- a/static_root/doc/pdfgetx/2.1.0/_sources/plotdata.rst.txt +++ /dev/null @@ -1,161 +0,0 @@ -.. index:: plotdata (program) -.. _cmd-plotdata: - -The plotdata program -======================================================================== - -.. include:: abbreviations.txt -.. program:: plotdata - -The PDFgetX3 software includes a simple stand-alone utility -:program:`plotdata` for plotting text data files. In most cases -this program can be invoked from a command-shell as :: - - plotdata file1.dat file2.dat - -which plots the numerical data from the text files :file:`file1.dat`, -:file:`file2.dat` together in a single graph. By default the first -column is used as an *x* variable and the second column is used for the -*y* values. After displaying the plot the program starts an `IPython`_ -interactive session allowing the user to modify or save plots. The -IPython session is initialized with the :data:`!filenames` variable -containing a list of plotted files. It also pre-loads the -|plotdata| and |findfiles| functions just as in PDFgetX3 -interactive session. The :py:func:`!plotdata` -function works in a similar way as the :program:`plotdata` program, -just its arguments need to be passed as Python function arguments -instead of command-line options. Thus an equivalent call of the -:py:func:`!plotdata` function would be:: - - In [1]: plotdata(['file1.dat', 'file2.dat']) - - -Selecting files ------------------------------------------------------------------------- - -The :program:`plotdata` program includes a file searching feature -that is useful for selecting a set of files in large -directories. It is also convenient for Windows operating systems, -where the command prompt cannot do filename expansion for patterns -such as ``*.dat``. The file search feature is controlled by the -following options: - -.. option:: -f, --find - - Use command line arguments as filename patterns and plot all matching - files. This option works in the same way as for - :program:`pdfgetx3`, for full details see the - :option:`pdfgetx3 --find ` documentation. Note that - within command line the special patterns ``^$<>`` need to be quoted - in double quotes (\\") so they are not processed by command shell. - -.. option:: -l, --list - - List the input files and exit. This is useful in conjunction - with the :option:`!-f, --find` option to check if data files - are selected as intended. - -Assuming the current directory contains 20 files named -:file:`file1.dat`, :file:`file2.dat`, ..., :file:`file20.dat`, -the plotting of files 9 to 13 could be done (with a check listing) -as follows :: - - $ plotdata -fl "<9-13>.dat" - file9.dat - file10.dat - file11.dat - file12.dat - file13.dat - $ plotdata -f "<9-13>.dat" - -Within an interactive IPython session the equivalent plot could be -produced by combining the |plotdata| and |findfiles| functions as :: - - In [1]: plotdata(findfiles("<9-13>.dat")) - - -Selecting x and y data ------------------------------------------------------------------------- - -The :program:`plotdata` program provides several ways of selecting -columns for *x* or *y* data and for specifying plot markers or line -formats. The columns can be specified using their integer index, -but one needs to keep in mind the index of the first column is "0" -as per Python indexing conventions. Here is a list of options -supported by the plotdata program (and function): - - -.. option:: -x X - - index or name of the *x*-column to plot. See the :option:`-y` option - for the supported syntax, but note that ``X`` may select only one - column. When set to "." use the data-row index for *x*. - -.. option:: -y Y - - index or name of the *y*-column or columns to plot. The ``Y`` column - specification can be a comma separated list of indices, column names - or Python-like ranges, for example "1,2", "G", "1:4" (START:STOP, - same as "1,2,3"), "1:4:2" (START:STOP:STEP, same as "1,3"), or - "-2:" (same as "-2,-1", i.e, the last 2 columns). Because column - indexing starts at "0" the second column must be specified as "1". - - The column names work if the data section in the file is preceded by - a headline of unique column names, for example:: - - x square cube - 1 1 1 - 2 4 8 - 3 9 27 - 4 16 64 - - For such data file the plotdata program will recognize column names - "x", "square" and "cube" and an implicit "." for row index. - -.. option:: -s STYLE, --style=STYLE - - optional plot format specification. See the - :func:`matplotlib.pyplot.plot` function - for a list of available formats. - -.. option:: -L LOG, --log=LOG - - axes to be plotted with logarithmic scaling, for example, "x", "y" or - "xy". Axes not listed in ``LOG`` will use linear scaling. - -.. option:: -h, --help - - display a brief usage info and exit. - -.. option:: -V, --version - - show program version and exit. - -.. option:: --manual - - Open this manual page in a Web browser and exit. - - -Examples ------------------------------------------------------------------------- - -The examples directory :file:`plotdata` contains a :file:`sincos.dat` -file that has 3-columns of values labeled as "x", "sin" and "cos". -Here are several examples of the :program:`plotdata` capabilities -when used from command line - the user is encouraged to try them out:: - - plotdata sincos.dat - plotdata -y 1,2 sincos.dat - plotdata -x . -y 0:3 sincos.dat - plotdata -y cos sincos.dat - plotdata -x sin -y cos -sr-- sincos.dat - -An equivalent usage from a general IPython session would be:: - - ipython --matplotlib=auto - In [1]: from diffpy.pdfgetx.plotdata import plotdata - In [2]: plotdata('sincos.dat') - In [3]: plotdata('sincos.dat', y=[1,2]) - In [4]: plotdata('sincos.dat', x='.', y=':3') - In [5]: plotdata('sincos.dat', y='cos') - In [6]: plotdata('sincos.dat', x='sin', y='cos', style='r--') diff --git a/static_root/doc/pdfgetx/2.1.0/_sources/quick-start.rst.txt b/static_root/doc/pdfgetx/2.1.0/_sources/quick-start.rst.txt deleted file mode 100644 index 0b2fffd1..00000000 --- a/static_root/doc/pdfgetx/2.1.0/_sources/quick-start.rst.txt +++ /dev/null @@ -1,163 +0,0 @@ -Quick-start guide -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 - -This guide assumes that the software has been correctly installed and -its command line programs PDFgetX3, PDFgetN3 and PDFgetS3 can be -executed by typing :program:`pdfgetx3`, :program:`pdfgetn3`, or -:program:`pdfgets3` in a shell window. Please, refer to the :doc:`installation ` section if this is not working yet. - -.. index:: pdfgetx3 (program) -.. _cmd-pdfgetx3: - -pdfgetx3 command ------------------------------------------------------------------------- - -The pdfgetx3 program is a command-line application, therefore all -the input files and run-parameters are supplied either as command-line -arguments or through a configuration file. In general, the pdfgetx3 is -executed from a command shell as :: - - pdfgetx3 [options] input1 input2 ... inputN - -The :file:`inputN` stands for an input powder diffraction data. The -:file:`inputN` file is a simple two-column text file, where the first -column corresponds to either the |twotheta| diffraction angle, or a -momentum transfer, *Q*, in inverse nanometer or inverse ångström units. -The second column contains the corresponding X-ray intensities. The -input file may start with a header containing comments or metadata -related to the measurement. PDFgetX3 will ignore any text leading to a -long two-column section. The example input files in this manual were -created with the -`FIT2D program `_ using -its "chi" output format, thus we will also refer to them as "chi-files". -A typical content of a "chi" file looks as folows: - -.. code-block:: none - - Pt_bulk-00055.tif: 2-theta Scan - 2-Theta Angle (Degrees) - - 1465 - 2.0003892E-02 0.0000000E+00 - 6.0011677E-02 0.0000000E+00 - 1.0001946E-01 0.0000000E+00 - 1.4002724E-01 0.0000000E+00 - 1.8003502E-01 0.0000000E+00 - ... - -The command-line options are arguments that start with a dash "-" and -are used to specify run-parameters or modify the program behavior. The -options can be specified in a short form that consists of a dash and -a single character, or in a long, more descriptive format starting with -a doubled dash ``--``. Options may require values. For short options, -the value may be joined to the option string, for example -:option:`!-w0.142774`, while for the long options it has to be separated -with an equal sign, e.g., :option:`!--wavelength=0.142774`. Although -all the PDF calculation parameters can be passed as command line -options, it is often more convenient to set them in a configuration -file. When run parameter is present both in a configuration file and -as command-line option, the command-line value takes precedence. The -command-line options are all described in the :doc:`options` section of -this manual. A brief summary of options can be also displayed by -executing :: - - pdfgetx3 --help - -The best way of getting familiar with PDFgetX3 is to process -the example diffraction data described in the :doc:`tutorial`. -In general, the first step is to create a commented configuration file ``pdfgetx3.cfg`` using:: - - pdfgetx3 --createconfig=pdfgetx3.cfg - -The configuration file can have any name, but it is preferable -to use either :file:`pdfgetx3.cfg` or :file:`.pdfgetx3.cfg`, -for these files are automatically loaded by PDFgetX3. All -other configuration files must be passed explicitly to the program -using the :option:`-c, --config <-c>` option. - -Open the pdfgetx3.cfg file in a **text** editor. The lines that -start with a hash mark ``#`` are comments and are not used. The lines -starting with a right brace ``[`` denote sections in the configuration -file. The active lines are all formatted as -"NAME=VALUE". Although PDFgetX3 has many options, in general only a few -of them are critical for the PDF calculation: - -* :confval:`dataformat` -- specifies the input data format - -* :confval:`wavelength` -- radiation wavelength in Å required for the - "twotheta" format. - -* :confval:`composition` -- chemical composition of the sample - -* :confval:`qmaxinst` -- upper *Q* boundary for a meaningful measurement - intensities. - -* :confval:`qmax` -- *Q*-cutoff for the Fourier transformation that - yields the PDF. - -Save the updated configuration file and run pdfgetx3 on the input data -:file:`FILENAME.chi` as :: - - pdfgetx3 --verbose=info -t gr FILENAME.chi - -Here the :option:`--verbose=info <--verbose>` option makes pdfgetx3 -print -more information about its operation. This helps to verify -if the configuration file is indeed loaded and if the parameter -values are assigned as intended. The PDFgetX3 will not write -any output files unless told so. The :option:`-t gr <-t>` option -tells the program to save the final |Gr| curve as a -:file:`FILENAME.gr` file in the working directory. - -The saved .gr file contains a header with all the calculation -parameters and the input file name. The .gr file can be therefore -also used as a configuration file in order to redo the same -calculation :: - - pdfgetx3 -c FILENAME.gr --plot=fq,gr - -Note this command does not include any .chi file and this will as -a result process the previously used input :file:`FILENAME.chi`. -The :option:`--plot=fq,gr <-p>` option tells PDFgetX3 to -display 2 plots for the reduced structure function |FQ| and the -final PDF |Gr|. The :option:`!--plot` option also implies an -:doc:`interactive mode ` -therefore the program does not exit, but starts an -interactive `IPython`_ session. To exit the interactive mode, -type ``exit()`` and press Enter. - -.. index:: pdfgetn3 (program) -.. _cmd-pdfgetn3: - -pdfgetn3 command ------------------------------------------------------------------------- - -The pdfgetx3 and pdfgetn3 programs operate in a very similar fashion -apart from being set to assume X-ray and neutron data respectively. -The type of the scattering data can be also specified using the -:option:`--mode` option. Running ``pdfgetn3`` is nearly identical -to executing ``pdfgetx3 --mode=neutron``. The only difference between -these commands is that pdfgetx3 checks for configuration files -:file:`pdfgetx3.cfg` and :file:`.pdfgetx3.cfg`, whereas -pdfgetn3 looks for :file:`pdfgetn3.cfg` and :file:`.pdfgetn3.cfg`. - -.. index:: pdfgets3 (program) -.. _cmd-pdfgets3: - -pdfgets3 command ------------------------------------------------------------------------- - -The pdfgets3 program is virtually the same as its counterparts for x-ray -(pdfgetx3) and neutron (pdfgetn3) diffraction data. The only difference -is that instead of referencing the well documented x-ray or neutron -scattering form factor data, a user-defined form factor data is used -for getting the PDF from a small-angle scattering (SAS) data. This -behavior is enabled by specifying ``mode = sas`` in the configuration -file or in the command line tool. The pdfgets3 program by default -searches for a configuration named :file:`pdfgets3.cfg` and -:file:`.pdfgets3.cfg` in order, when no configuration file is specified. - -Please refer to the :doc:`tutorial section ` for a step-by-step processing of the example data files and for demonstration of the capabilities in PDFgetX3, PDFgetN3 and PDFgetS3. diff --git a/static_root/doc/pdfgetx/2.1.0/_sources/release.rst.txt b/static_root/doc/pdfgetx/2.1.0/_sources/release.rst.txt deleted file mode 100644 index 7ede93fa..00000000 --- a/static_root/doc/pdfgetx/2.1.0/_sources/release.rst.txt +++ /dev/null @@ -1,3 +0,0 @@ -.. index:: release notes - -.. mdinclude:: ../../CHANGELOG.md diff --git a/static_root/doc/pdfgetx/2.1.0/_sources/tutorial.rst.txt b/static_root/doc/pdfgetx/2.1.0/_sources/tutorial.rst.txt deleted file mode 100644 index ee02754b..00000000 --- a/static_root/doc/pdfgetx/2.1.0/_sources/tutorial.rst.txt +++ /dev/null @@ -1,744 +0,0 @@ -Tutorial -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 -.. index:: example files -.. py:currentmodule:: diffpy.pdfgetx - -In this tutorial we will convert several X-ray powder diffraction -patterns to corresponding PDFs. Open a terminal on a Unix-based system -or a Command Prompt on Windows and navigate to the :file:`examples` -folder included with the PDFgetX3 distribution. The :file:`examples` -folder can be found in the parent "doc" directory relative to this -document or another option is to just search your file system for -one of the input files mentioned below. -The example files are also available at -|zipped-examples|. - - -.. index:: examples - -Nickel X-ray PDF ------------------------------------------------------------------------- - -predefined configuration file -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - - -Change to the :file:`Ni` directory. The file named -:file:`ni300mesh_300k_nor_1-5.chi` contains powder X-ray data -measured from nickel at the Advanced Photon Source beamline -6ID-D. The file contains two columns for the |twotheta| scattering -angles and X-ray intensities. The second file -:file:`kapton_bgrd_300k_nor_2-3.chi` contains the background -measurement, i.e., the intensities from an empty capillary. -Finally, the :file:`pdfgetx3.cfg` contains a complete configuration -parameters for converting the powder pattern to a PDF. Since all -processing parameters are already defined in the configuration file, -the first PDF calculation is very simple and involves running the -:ref:`pdfgetx3 ` program -with the powder data file as an argument:: - - $ pdfgetx3 ni300mesh_300k_nor_1-5.chi - -For the first run there should be no output on the screen, -however a new file, :file:`ni300mesh_300k_nor_1-5.gr` should appear -in the work directory. -We can use the :ref:`plotdata ` program, -included with this software, to plot the output data:: - - $ plotdata ni300mesh_300k_nor_1-5.gr - -This will open a graph window and start an `IPython`_ interactive session. -To exit and close the figure, type ``exit()`` on the IPython prompt. -Let's run the program again, but now with a -:option:`--verbose=info <--verbose>` -option, to show more details about the program actions. :: - - $ pdfgetx3 --verbose=info ni300mesh_300k_nor_1-5.chi - - INFO:applying pdfgetx3 defaults - INFO:set config.mode = xray - INFO:searching for default config file /home/user/.pdfgetx3.cfg - INFO:searching for default config file .pdfgetx3.cfg - INFO:searching for default config file pdfgetx3.cfg - INFO:loaded default config file pdfgetx3.cfg - INFO:reset config.twothetazero = 0.0 - INFO:parsing config file section [DEFAULT] - INFO:set config.dataformat = twotheta - INFO:set config.backgroundfile = kapton_bgrd_300k_nor_2-3.chi - INFO:set config.outputtypes = gr - INFO:set config.wavelength = 0.142774 - INFO:set config.composition = Ni - INFO:set config.qmaxinst = 26.5 - INFO:set config.qmax = 26.0 - INFO:set config.rmin = 0.0 - INFO:set config.rmax = 30.0 - INFO:set config.rstep = 0.01 - INFO:finished parsing config file - INFO:processing command line options - INFO:set config.verbose = info - INFO:finished with command line options - INFO:using 1 input files from the command line. - INFO:configuring PDFGetter mode 'xray' - INFO:calling config_xray - INFO:started PDF processing. - INFO:processing 'ni300mesh_300k_nor_1-5.chi' - INFO:resolved output file '' as 'ni300mesh_300k_nor_1-5.gr' - WARNING:ni300mesh_300k_nor_1-5.gr already exists. - WARNING:Use "--force=yes" or "--force=once" to overwrite. - INFO:elapsed time: 0.095 - -Here we can see what configuration files are searched, which of them -get loaded and what are the effective values of the processing -parameters. Unless the :option:`!--verbose` option is in effect, the -program will show only messages that have either WARNING or ERROR -importance. The warning line above indicates no output has been -written, because that file already exists. This safety check can be -overruled with the :option:`--force=yes <--force>` option, upon -which pdfgetx3 would overwrite any existing files. - -PDFgetX3 output files start with a header that lists all the processing -parameters and can be used as a valid configuration file with the -:option:`-c` option. Another option, :option:`--plot=[iq,sq,fq,gr] -<-p>` turns on plotting of the final PDF or of some other result. A -side effect of the :option:`!--plot` option is that pdfgetx3 starts in -an interactive mode, so the user can manipulate or save the plots. To -put it all together, we are now going to redo the original PDF and plot -its reduced total scattering function |FQ| and the PDF curve |Gr|. This -time the chi file is not necessary, because the input file is already -listed in the gr file that is now used as a custom configuration:: - - $ pdfgetx3 -c ni300mesh_300k_nor_1-5.gr --plot=fq,gr - - WARNING:ni300mesh_300k_nor_1-5.gr already exists. - WARNING:Use "--force=yes" or "--force=once" to overwrite. - - Variables related to PDF processing: - - pdfgetter -- PDFGetter used for calculation. - config -- configuration data used by PDFGetter. - See config.inputfiles for a list of inputs. - iraw -- matrix of input raw intensities with 2 rows per file. - iq sq fq gr -- intermediate results per each input file stored - as matrix rows. - - Functions: - - tuneconfig -- dynamically tune configuration variables. - processfiles -- process specified data files. - clearsession -- clear all elements from the inputfiles, iraw, - iq, sq, fq and gr variables. - plotdata -- plot all or selected columns from a text data file. - loaddata -- load all or selected columns from a text data file. - findfiles -- search for files matching the specified patterns. - - Use "%pdfgetx3" for a fresh run without exiting IPython. - In [1]: - -This will open a plot figure similar to - -.. image:: images/nickelfqgr.png - -Because of the :doc:`interactive mode ` implied by plotting, -the program enters an IPython session. -The IPython environment is preloaded with several extra functions -and variables related to the PDF processing. For example, the -:interactvar:`config` variable stores all the configuration parameters, -and its content can be displayed with the :py:func:`print` -function as :: - - In [1]: print(config) - - configfile = ni300mesh_300k_nor_1-5.gr - configsection = DEFAULT - dataformat = twotheta - ... - qmax = 26.0 - ... - -The :py:func:`.processfiles` function allows to redo the -whole calculation and plotting process for additional input files or -for new parameter values. To plot the |FQ| and |Gr| -curves calculated at |Qmax| = 22 |Ainv|, we can call -:py:func:`!processfiles` and pass it a keyword argument for -the new qmax as follows:: - - In [2]: processfiles(qmax=22) - - # the qmax parameter was updated to a new value, thus - In [3]: config.qmax - Out[3]: 22 - -There should be now two lines in each plot axis corresponding to -the results at |Qmax| equal 26 and 22 |Ainv|. To exit the program, -type ``exit()``. - - -processing from scratch -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -We have already encountered the command-line :option:`option -c <-c>` -for specifying a custom configuration file. A special argument "NONE", -will make pdfgetx3 ignore any configuration files and start up in a -default state. We can use this feature to process the nickel PDF as if -we did not have any configuration file:: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi - - WARNING:Nothing to do, use "-t" or "--plot" options. - ERROR:Configuration error: wavelength not specified. - ERROR:See "--help" for more hints. - -There is an error, for the wavelength is necessary to convert -the scattering angle |twotheta| to momentum transfer *Q*. The -X-ray wavelength was 0.142774 Å, which can be passed with the -:option:`-w, --wavelength <-w>` option:: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 - - ... - ERROR:Configuration error: Chemical composition not known. - ERROR:See "--help" for more hints. - -There is still an error. The PDF calculation needs an average -X-ray scattering factor of the material, which is obtained from -sample chemical composition. The composition can be specified -with the :option:`--composition` option. The example -below uses a "\\\\" character to indicate the command continues -on the next line. Such syntax works in Unix terminals, but -on Windows the command has to be typed all on a single line:: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \ - --composition=Ni - - WARNING:Nothing to do, use "-t" or "--plot" options. - ... - -There was no error message this time, but the program complains -about a lack of action. The pdfgetx3 program does not write any results -unless instructed by the :option:`-t, --outputtypes <-t>` option. -The outputtypes option recognizes the following result types: -"iq", "sq", "fq", "gr". One or more of these type strings, -separated by a comma, can be included with the -:option:`!-t` option, which will produce the corresponding -output files. An empty string, such as ``-t ""``, or ``-t NONE`` -may be used to clear any outputtypes defined in the configuration file, -and avoid the unseemly file-exists warnings. - -At this point, we will not write any output files, but will use the -:option:`--plot <-p>` option to display the calculated curves. The -:option:`!--plot` accepts the same arguments as outputtypes, so to -display the |FQ| and |Gr| curves we shall run :: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \ - --composition=Ni --plot=fq,gr - - WARNING:qmaxinst reset to last nonzero point qmaxinst=28.0865680161 - WARNING:qmax reset to the data boundary qmaxinst=28.0865680161 - -which should open the following plot window: - -.. image:: images/nickelfqgrnoisy.png - -The graphs look terrible. The PDF is very noisy and the |FQ| curve -shows a sudden break at about 27 |Ainv|. What happened? The powder -intensities are inaccurate at a very top of the detector angular range. -The interactive session is setup with -:interactvar:`iraw`, :interactvar:`iq`, :interactvar:`sq`, -:interactvar:`fq`, :interactvar:`gr` -variables for the original raw data and intermediate results. We -are going to plot the "iq" variable that has the input intensities -resampled on the *Q* grid. The matplotlib function -:py:func:`~matplotlib.pyplot.clf` clears the figure, -the iq variable is a two-row matrix with *Q* and *I* rows, and the -:py:func:`~matplotlib.pyplot.axis` -function lets us zoom to a given range:: - - In [1]: clf() - In [2]: plot(iq[0], iq[1]) - Out[2]: [] - In [3]: axis([20, 29, 0, 3000]) - Out[3]: [20, 29, 0, 3000] - -The graph shows a sudden drop in the raw intensities at 27 |Ainv|. -The :confval:`qmaxinst` variable defines a *Q* cutoff for a meaningful -instrument intensities and, to be on a safe side, we are going to set -it to 26.5 |Ainv| :: - - In [4]: processfiles(qmaxinst=26.5) - WARNING:qmax reset to the data boundary qmaxinst=26.5 - -The updated curves looks reasonable without any oscillations and -breakpoints. The :py:func:`.tuneconfig` function provides a -GUI-driven way for visualizing the processing parameters and their -effect on the results. Type ``tuneconfig()`` to execute the function, -which should open a new window with several sliders. Try to move -different sliders and see how do the |FQ| and |Gr| curves change. -The :confval:`rpoly` parameter controls the degree of data-correction -polynomial and is an approximate low-*r* bound of reliable *G* -values. Once the parameters are tuned, they may be set to -exact values. We will also turn on the writing of the |Gr| -curve and save it to an output file :file:`nicmd.gr`:: - - In [14]: config.qmax = 26 - In [15]: config.outputtypes = 'gr' - In [16]: config.output = 'nicmd' - In [17]: processfiles() - - -Platinum X-ray series ------------------------------------------------------------------------- - -PDFgetX3 has been designed to handle large series of data files. -With the fast area-detectors it is easy to measure hundreds of X-ray -patterns in a time or temperature series. Normally, these input -files need to be entered as command line arguments to the pdfgetx3 -program. This is usually no problem with Unix-like shells, which -expand filename patterns to a list of matching files. -However, such file generation is in general not available on Windows. -The input file names tend to include scan numbers which are useful -for selecting desired data, yet even with Unix shells it is -difficult to match a range of scan numbers -(`z-shell `_ being a notable exception). - -.. _my-findexamples: - -matching input files -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -The :program:`pdfgetx3` program includes a built-in function for finding -a set of input files. The command line arguments are normally taken as -input file names. However, if the :option:`-f, --find <-f>` option is -present, the arguments are understood as patterns and the program looks -for files that match ALL of them. Another option -:option:`-l, --list <-l>` makes pdfgetx3 print out the matching files -without any other action, which can be used to verify if the patterns -match intended files. - -We will try out this file search on platinum example files. Open a -terminal and navigate to the :file:`Pt` directory. There should be a -:file:`series` subdirectory with 6 chi files indexed from 903 to 908. -At first, let's stay in the :file:`Pt` directory and run the following -command :: - - $ pdfgetx3 --list --find - - Pt_bulk-00055-pdfgetx2.gr - Pt_bulk-00055-pdfgetx3.gr - Pt_bulk-00055.chi - empty_capillary-00032.chi - pdfgetx3.cfg - plotpdfcomparison.py - -Without any patterns the file search matches all files in the current -directory. Now let's try to add name patterns. There are few special -patterns, for example ``^`` matches at the beginning of the filename, ``$`` at the end and ```` matches a range of integer values from -*N* to *M*. The patterns containing ``^$<>`` need to be quoted as -these characters have special meaning in the shell. Here are some -examples how it works. - -Filenames containing "y":: - - $ pdfgetx3 --list --find y - empty_capillary-00032.chi - plotpdfcomparison.py - -Filenames that containing both "y" and "chi", here we use the -options :option:`!--list` and :option:`!--find` in an abbreviated -form :option:`!-l` and :option:`!-f`:: - - $ pdfgetx3 -lf y chi - empty_capillary-00032.chi - -Filenames that start with "e":: - - $ pdfgetx3 --list --find "^e" - empty_capillary-00032.chi - -Filenames that contain *character* "2":: - - $ pdfgetx3 --list --find 2 - Pt_bulk-00055-pdfgetx2.gr - empty_capillary-00032.chi - -Filenames that contain *numeric value* "2":: - - $ pdfgetx3 -lf "<2>" - Pt_bulk-00055-pdfgetx2.gr - -The special argument ``+`` starts a new group of patterns to -generate extra files when they cannot be all covered by -a single set of patterns. For example, to match files that -contain contain both "bulk" and "chi" substrings and then -also those that have "empty" and "chi" in their names, use:: - - $ pdfgetx3 -lf bulk chi + empty chi - Pt_bulk-00055.chi - empty_capillary-00032.chi - -When pattern groups overlap the resulting matches are -made unique and each file is listed only once :: - - $ pdfgetx3 -lf bulk chi + chi - Pt_bulk-00055.chi - empty_capillary-00032.chi - - -data search path -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -Each group of PDFgetX3 patterns can have one entry containing -forward slash "/" to specify a non-current path that is searched -for input files. The path specification affects the current and -the following pattern groups unless they provide their own path. -The chi files numbered "903" to "905" and "908" from the -:file:`series` subdirectory can be therefore matched using :: - - $ pdfgetx3 -lf series/ "<903-905>" + 908 - series/Pt_bulk_ramp03-00903.chi - series/Pt_bulk_ramp03-00904.chi - series/Pt_bulk_ramp03-00905.chi - series/Pt_bulk_ramp03-00908.chi - -The current directory can be selected using `./` :: - - $ pdfgetx3 -lf series/ 903 + ./ bulk chi - series/Pt_bulk_ramp03-00903.chi - Pt_bulk-00055.chi - -When additional pattern groups contain only the path -argument, they reuse the existing set of patterns. The -".chi"-ending files in the current and :file:`series` -directories can be thus found using :: - - $ pdfgetx3 -lf ".chi$" + series/ - Pt_bulk-00055.chi - empty_capillary-00032.chi - series/Pt_bulk_ramp03-00903.chi - series/Pt_bulk_ramp03-00904.chi - series/Pt_bulk_ramp03-00905.chi - series/Pt_bulk_ramp03-00906.chi - series/Pt_bulk_ramp03-00907.chi - series/Pt_bulk_ramp03-00908.chi - - -output file names -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -By default the output files are saved in the current directory. The -output path, can be changed with the :option:`-o, --output <-o>` option. -The :option:`!-o` recognizes several tokens that are replaced with -parts of the input file name, for example, "@b" expands to an -extension-stripped base name. In similar faction, "@o" is replaced -with the output type extension. Thus to generate PDFs for all files -in the :file:`series` directory and save them in the -:file:`series-gr` subfolder do :: - - $ pdfgetx3 --find series/ "<900-910>.chi" --output=series-gr/@b.@o - -The extension ".@o" is automatic when not included anywhere in the -output file name. Thus to process the Pt series at |Qmax| = 18 |Ainv| -while saving the results in the same folder, but with a "_qmax18" suffix -in their filenames do :: - - $ pdfgetx3 --find series/ "<900-910>.chi" --qmax=18 -o series-gr/@b_qmax18 - -For input file :file:`Pt_bulk_ramp03-00903.chi` the :option:`!-o` option -above expands to output path :file:`series-gr/Pt_bulk_ramp03-00903_qmax18.gr`. -The :file:`series-gr` directory should now contain 12 "gr" files, -6 of them processed at |Qmax| = 27 |Ainv| as given by configuration -file and 6 others processed at |Qmax| = 18 |Ainv|. - -.. seealso:: :option:`-o, --output <-o>` for a list of output tokens - -.. index:: tuneconfig (example) -.. _my-tuneconfig: - -Interactive tuning of parameters ------------------------------------------------------------------------- - -One of the most powerful features of PDFgetX3 is the ability to tune -PDF processing parameters in an interactive mode and immediately -visualize their effect on the results. To demonstrate this feature, -navigate to the :file:`Ni` directory in the shell and process -the nickel PDF while plotting the |FQ| and |Gr| curves. -Because of plotting the program will open an interactive IPython -session. The tuning mode can be then entered by calling the -:py:func:`.tuneconfig` -function from the IPython environment :: - - $ pdfgetx3 --plot=fq,gr ni300mesh_300k_nor_1-5.chi - ... - In [1]: tuneconfig() - -The -:py:func:`!tuneconfig` -function will by default add a second set of live lines -for the plotted curves and open a GUI dialog with sliders for the -tunable process parameters. Changing any slider would immediately -recalculate the PDF and update live lines in the plot. - -.. image:: images/tunenickelfqgr.png - -The *constant data scale* check-box rescales the result curves to a -constant maximum value. This is useful for assessing if a parameter -change produces different curve shape or if it just rescales the -results. The tunable parameters are described in the -:ref:`PDF parameters section `. -Only the active parameters are displayed in the tuneconfig GUI, -thus there would be no slider for the :confval:`bgscale` parameter -if PDF has been processed without any background data. - -By default the -:py:func:`!tuneconfig` -function displays the same curves as -specified by the :option:`--plot <-p>` option, however it can be -configured to show arbitrary intermediate results or even visualize -selected steps in the PDF processing. We shall demonstrate this by -showing a live-plot of the polynomial correction together with the final -PDF. At first, we shall use the :py:meth:`!describe` method of the -:py:func:`.pdfgetter` object to print out the chain of -transformations involved in the PDF processing and obtain a reference to -the transformation object *t4* that applies the polynomial correction. -The transformation object can be then included in a list of plot -identifiers that are passed to the :py:func:`!tuneconfig` function :: - - $ pdfgetx3 -i ni300mesh_300k_nor_1-5.chi - ... - Use "%pdfgetx3" for a fresh run without exiting IPython. - - In [1]: fig, ax = subplots(2) - In [2]: pdfgetter.describe() - 0 TransformTwoThetaToQA - convert x data from twotheta to Q in 1/A - 1 TransformQGridRegular - Remove the data outside the (qmin, qmaxinst) range - 2 TransformBackground - subtract background intensity - 3 TransformXrayASFnormChris - scale and normalize intensities by x-ray scattering factors - 4 TransformSQnormRPoly - Normalize S(Q) by fitting a polynomial - 5 TransformSQToFQ - Convert S(Q) to F(Q). - 6 TransformFQgrid - Resample F(Q) to a regular grid suitable for FFT - 7 TransformFQToGr - Convert F(Q) to G(r). - In [3]: t4 = pdfgetter.getTransformation(4) - In [4]: tuneconfig([t4, 'gr'], axeslist=ax) - In [5]: ax[0].legend(loc=2) - -The :py:func:`~matplotlib.pyplot.subplots` function above -is to create a new figure with 2 axes on top of each other. -Overall, the code above should display the following plot -and a GUI window: - -.. image:: images/tunenickelt4gr.png - -The tuning can be finished by clicking the ``Done`` button or closing the -tuneconfig GUI window. The parameter values can be thereafter adjusted -to a rounded values by setting an attribute of the :interactvar:`config` -object, for example:: - - In [5]: config.bgscale = 1.5 - -Finally, to save the new results, we shall first confirm -:confval:`outputtypes` have been correctly set and then use the -:py:func:`.processfiles` function to redo the calculations, plots and -data output for the updated configuration. Note that the -:py:func:`!processfiles` function accepts keyword arguments for -configuration parameters. This is used at line ``In [8]`` to -turn on the :confval:`force` flag and is in effect a shortcut -for an extra ``config.force = True`` statement. :: - - In [6]: config.outputtypes - Out[6]: ['gr'] - In [7]: processfiles() - WARNING:ni300mesh_300k_nor_1-5.gr already exists. - WARNING:Use "--force=yes" or "--force=once" to overwrite. - In [8]: processfiles(force=True) - -:file:`ni300mesh_300k_nor_1-5.gr` was successfully saved at an -updated configuration for there were no warnings after the last call. - - -Neutron PDF ------------------------------------------------------------------------- - -This example illustrates PDF extraction from -neutron powder data using :ref:`pdfgetn3 `. -Navigate to the :file:`n-Sapphire` directory in the shell. -The :file:`sapphire755.dat` file contains powder diffraction data from -sapphire (α-Al\ :sub:`2`\ O\ :sub:`3`) -measured at the constant-wavelength PEARL instrument -at the Delft University of Technology. -The :file:`pdfgetn3.cfg` configuration file specifies -processing parameters such as :confval:`wavelength`, -:confval:`twothetazero`, :confval:`composition`, and :confval:`mode`. - -To extract the sapphire neutron PDF run :: - - $ pdfgetn3 --verbose=info sapphire755.dat - - INFO:applying pdfgetn3 defaults - INFO:set config.mode = neutron - INFO:searching for default config file /home/user/.pdfgetn3.cfg - INFO:searching for default config file .pdfgetn3.cfg - INFO:searching for default config file pdfgetn3.cfg - INFO:loaded default config file pdfgetn3.cfg - INFO:reset config.twothetazero = 0.0 - INFO:parsing config file section [DEFAULT] - INFO:set config.dataformat = twotheta - INFO:set config.backgroundfile = - INFO:set config.outputtypes = fq, gr - INFO:set config.mode = neutron - INFO:set config.wavelength = 1.0989 - INFO:set config.twothetazero = -0.38 - INFO:set config.composition = Al2O3 - INFO:set config.qmaxinst = 11.2 - INFO:set config.qmax = 11.2 - INFO:set config.rmin = 0.0 - INFO:set config.rmax = 20.0 - INFO:set config.rstep = 0.01 - INFO:finished parsing config file - INFO:processing command line options - INFO:set config.verbose = info - INFO:finished with command line options - INFO:using 1 input files from the command line. - INFO:configuring PDFGetter mode 'neutron' - INFO:calling config_neutron - INFO:started PDF processing. - INFO:processing 'sapphire755.dat' - INFO:resolved output file '' as 'sapphire755.fq' - INFO:written outpufile sapphire755.fq - INFO:resolved output file '' as 'sapphire755.gr' - INFO:written outpufile sapphire755.gr - INFO:elapsed time: 0.097 - -This will produce two files :file:`sapphire755.fq`, :file:`sapphire755.gr` -for the |FQ| and |Gr| functions. -To compare them with expected results use :: - - $ plotdata sapphire755-expected.fq sapphire755.fq - $ plotdata sapphire755-expected.gr sapphire755.gr - - -Fit twothetazero ------------------------------------------------------------------------- - -For a good quality PDF it is essential to use powder patterns with -accurate values of *Q*. Some instruments may produce spectra with -a slightly offset scattering angle |twotheta| which -causes inaccurate *Q* and a noticeably worse PDF. -In this example we fit a constant-wavelength neutron PDF from nickel -together with the :confval:`twothetazero` correction parameter for -diffractometer offset. -The procedure can be used to calibrate the zero correction from -a standard sample and then use it for subsequent PDF extractions. -The protocol can be also applied to fit zero correction in -a full-fledged PDF refinement in case -the zero offset may change for different samples. - -This tutorial requires either Linux or Mac OS X platforms, -because the PDF fitting is conducted with -`diffpy.cmi `__, -which is not yet available for Windows. -If diffpy.cmi is not yet installed, -we recommend to use `Anaconda Python`_ and set up a dedicated -Anaconda environment *nbcmi* for this tutorial. -This can be accomplished using the following steps:: - - $ conda create -n nbcmi -c diffpy python=2 diffpy.cmi - $ conda activate nbcmi - $ pip install path/to/diffpy.pdfgetx-VERSION.whl - -When these prerequisites are in place, -change to the :file:`n-twothetazero-fit` directory -and open the self documented Jupyter notebook as follows :: - - $ jupyter notebook fit-twothetazero.ipynb - -.. |tthzero| replace:: :confval:`!twothetazero` - -The notebook sets up and executes several PDF refinements and -compares the results from fits on uncorrected data and with -a fitted |tthzero|. -After running all cells the notebook should produce similar graphs -as in the figure below. - -.. figure:: images/twothetazerofit.* - - Refinement of nickel neutron PDF for **(a)** uncorrected data - and **(b)** with a refined zero correction. - The extracted PDFs are plotted as blue circles, - simulated PDFs as red lines and - the difference is plotted offset in green below. - -The final refined zero offset in the notebook should be approximately -0.36°. -The correction produces experimental PDF with a remarkably better fit -residual R\ :sub:`w` which is lowered from (a) 0.18 to (b) 0.05. - - -Small-angle-scattering PDF (sasPDF) ------------------------------------------------------------------------- - -Here we illustrate how to extract a PDF from small-angle-scattering (sas) data using :ref:`pdfgets3 `. -To do this, navigate to the :file:`Au_DNA_NPA` directory in your terminal. -In this folder, you will find :file:`Au_DNA_NPA.chi` and -:file:`Au_DNA_FF.chi` files which correspond to diffraction data from -DNA-capped Au nanoparticle assemblies and from a DNA-capped Au -nanoparticle colloidal solution respectively. Those two files were -measured at X21 beamline, NSLS and published in `D. Nykypanchuk, M. M. -Maye, D. van der Lelie, and O. Gang, Nature 451, 549 (2008). -`_. We thank Prof. Oleg Gang (Columbia University) for sharing this data. The :file:`pdfgets3.cfg` -configuration file specifies processing parameters such as :confval:`formfactorfile` (required by ``sas`` mode), :confval:`qmin`, :confval:`qmax`, and :confval:`mode`. - -To extract the PDF of DNA-capped DNA nanoparticle assemblies :: - - $ pdfgets3 --verbose=info Au_DNA_NPA.chi - - INFO:applying pdfgets3 defaults - INFO:set config.mode = sas - INFO:searching for default config file /home/user/.pdfgets3.cfg - INFO:searching for default config file .pdfgets3.cfg - INFO:searching for default config file pdfgets3.cfg - INFO:loaded default config file pdfgets3.cfg - INFO:reset config.twothetazero = 0.0 - INFO:parsing config file section [DEFAULT] - INFO:set config.dataformat = QA - INFO:set config.backgroundfile = - INFO:set config.datapath = [] - INFO:set config.formfactorfile = Au_DNA_FF.chi - INFO:set config.output = - INFO:set config.outputtypes = fq, gr - INFO:set config.force = yes - INFO:set config.mode = sas - INFO:set config.rpoly = 240.605 - INFO:set config.qmaxinst = 0.075 - INFO:set config.qmin = 0.01 - INFO:set config.qmax = 0.072 - INFO:set config.rmin = 100.0 - INFO:set config.rmax = 5000.0 - INFO:set config.rstep = 1.0 - INFO:set config.plot = iq, fq, gr - INFO:set config.verbose = info - INFO:finished parsing config file - INFO:processing command line options - INFO:set config.verbose = info - INFO:finished with command line options - INFO:using 1 input files from the command line. - INFO:configuring PDFGetter mode 'sas' - INFO:calling config_sas - INFO:started PDF processing. - INFO:processing 'Au_DNA_NPA.chi' - INFO:resolved output file '' as 'Au_DNA_NPA.fq' - INFO:written outpufile Au_DNA_NPA.fq - INFO:resolved output file '' as 'Au_DNA_NPA.gr' - INFO:written outpufile Au_DNA_NPA.gr - INFO:elapsed time: 0.947 - - -This will save two files :file:`Au_DNA_NPA.fq`, :file:`Au_DNA_NPA.gr` in the same directoy for the |FQ| and |Gr| functions. 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- padding-right: 5px; -} - -dl.field-list > dt:after { - content: ":"; -} - -dl.field-list > dd { - padding-left: 0.5em; - margin-top: 0em; - margin-left: 0em; - margin-bottom: 0em; -} - -dl { - margin-bottom: 15px; -} - -dd > p:first-child { - margin-top: 0px; -} - -dd ul, dd table { - margin-bottom: 10px; -} - -dd { - margin-top: 3px; - margin-bottom: 10px; - margin-left: 30px; -} - -dt:target, span.highlighted { - background-color: #fbe54e; -} - -rect.highlighted { - fill: #fbe54e; -} - -dl.glossary dt { - font-weight: bold; - font-size: 1.1em; -} - -.optional { - font-size: 1.3em; -} - -.sig-paren { - font-size: larger; -} - -.versionmodified { - font-style: italic; -} - -.system-message { - background-color: #fda; - padding: 5px; - border: 3px solid red; -} - -.footnote:target { - background-color: #ffa; -} - -.line-block { - display: block; - margin-top: 1em; - margin-bottom: 1em; -} - -.line-block .line-block { - margin-top: 0; - margin-bottom: 0; - margin-left: 1.5em; -} - -.guilabel, .menuselection { - font-family: sans-serif; 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-} - -div.code-block-caption span.caption-number { - padding: 0.1em 0.3em; - font-style: italic; -} - -div.code-block-caption span.caption-text { -} - -div.literal-block-wrapper { - padding: 1em 1em 0; -} - -div.literal-block-wrapper div.highlight { - margin: 0; -} - -code.descname { - background-color: transparent; - font-weight: bold; - font-size: 1.2em; -} - -code.descclassname { - background-color: transparent; -} - -code.xref, a code { - background-color: transparent; - font-weight: bold; -} - -h1 code, h2 code, h3 code, h4 code, h5 code, h6 code { - background-color: transparent; -} - -.viewcode-link { - float: right; -} - -.viewcode-back { - float: right; - font-family: sans-serif; -} - -div.viewcode-block:target { - margin: -1px -10px; - padding: 0 10px; -} - -/* -- math display ---------------------------------------------------------- */ - -img.math { - vertical-align: middle; -} - -div.body div.math p { - text-align: center; -} - -span.eqno { - float: right; -} - -span.eqno a.headerlink { - position: relative; - left: 0px; - z-index: 1; -} - -div.math:hover a.headerlink { - visibility: visible; -} - -/* -- printout stylesheet --------------------------------------------------- */ - -@media print { - div.document, - div.documentwrapper, - div.bodywrapper { - margin: 0 !important; - width: 100%; - } - - div.sphinxsidebar, - div.related, - div.footer, - #top-link { - display: none; - } -} \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.1.0/_static/classic.css b/static_root/doc/pdfgetx/2.1.0/_static/classic.css deleted file mode 100644 index 3496a7bb..00000000 --- a/static_root/doc/pdfgetx/2.1.0/_static/classic.css +++ /dev/null @@ -1,271 +0,0 @@ -/* - * classic.css_t - * ~~~~~~~~~~~~~ - * - * Sphinx stylesheet -- classic theme. - * - * :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS. - * :license: BSD, see LICENSE for details. - * - */ - -@import url("basic.css"); - -/* -- page layout ----------------------------------------------------------- */ - -html { - /* CSS hack for macOS's scrollbar (see #1125) */ - background-color: #FFFFFF; -} - -body { - font-family: 'Palatino', 'Palatino Linotype', 'URW Palladio L', 'Century Schoolbook L', 'Georgia', serif; - font-size: 100%; - background-color: white; - color: #000; - margin: 0; - padding: 0; -} - -div.document { - background-color: white; -} - -div.documentwrapper { - float: left; - width: 100%; -} - -div.bodywrapper { - margin: 0 0 0 230px; -} - -div.body { - background-color: white; - color: #222222; - padding: 0 20px 30px 20px; -} - -div.footer { - color: #555555; - width: 100%; - padding: 9px 0 9px 0; - text-align: center; - font-size: 75%; -} - -div.footer a { - color: #555555; - text-decoration: underline; -} - -div.related { - background-color: white; - line-height: 30px; - color: #666666; -} - -div.related a { - color: #444444; -} - -div.sphinxsidebar { -} - -div.sphinxsidebar h3 { - font-family: 'Myriad Pro', 'Trebuchet Ms', 'Segoe UI', sans-serif; - color: #444444; - font-size: 1.4em; - font-weight: normal; - margin: 0; - padding: 0; -} - -div.sphinxsidebar h3 a { - color: #444444; -} - -div.sphinxsidebar h4 { - font-family: 'Myriad Pro', 'Trebuchet Ms', 'Segoe UI', sans-serif; - color: #444444; - font-size: 1.3em; - font-weight: normal; - margin: 5px 0 0 0; - padding: 0; -} - -div.sphinxsidebar p { - color: #444444; -} - -div.sphinxsidebar p.topless { - margin: 5px 10px 10px 10px; -} - -div.sphinxsidebar ul { - margin: 10px; - padding: 0; - color: #444444; -} - -div.sphinxsidebar a { - color: #444444; -} - -div.sphinxsidebar input { - border: 1px solid #444444; - font-family: sans-serif; - font-size: 1em; -} - - -/* for collapsible sidebar */ -div#sidebarbutton { - background-color: #3c6e83; -} - - -/* -- hyperlink styles ------------------------------------------------------ */ - -a { - color: #00608f; - text-decoration: none; -} - -a:visited { - color: #30306f; - text-decoration: none; -} - -a:hover { - text-decoration: underline; -} - - - -/* -- body styles ----------------------------------------------------------- */ - -div.body h1, -div.body h2, -div.body h3, -div.body h4, -div.body h5, -div.body h6 { - font-family: 'Myriad Pro', 'Trebuchet Ms', 'Segoe UI', sans-serif; - background-color: white; - font-weight: normal; - color: #1a1a1a; - border-bottom: 1px solid #ccc; - margin: 20px -20px 10px -20px; - padding: 3px 0 3px 10px; -} - -div.body h1 { margin-top: 0; font-size: 200%; } -div.body h2 { font-size: 160%; } -div.body h3 { font-size: 140%; } -div.body h4 { font-size: 120%; } -div.body h5 { font-size: 110%; } -div.body h6 { font-size: 100%; } - -a.headerlink { - color: #aaaaaa; - font-size: 0.8em; - padding: 0 4px 0 4px; - text-decoration: none; -} - -a.headerlink:hover { - background-color: #aaaaaa; - color: white; -} - -div.body p, div.body dd, div.body li, div.body blockquote { - text-align: justify; - line-height: 130%; -} - -div.admonition p.admonition-title + p { - display: inline; -} - -div.admonition p { - margin-bottom: 5px; -} - -div.admonition pre { - margin-bottom: 5px; -} - -div.admonition ul, div.admonition ol { - margin-bottom: 5px; -} - -div.note { - background-color: #eee; - border: 1px solid #ccc; -} - -div.seealso { - background-color: #ffc; - border: 1px solid #ff6; -} - -div.topic { - background-color: #eee; -} - -div.warning { - background-color: #ffe4e4; - border: 1px solid #f66; -} - -p.admonition-title { - display: inline; -} - -p.admonition-title:after { - content: ":"; -} - -pre { - padding: 5px; - background-color: #eeffcc; - color: #333333; - line-height: 120%; - border: 1px solid #ac9; - border-left: none; - border-right: none; -} - -code { - background-color: #ecf0f3; - padding: 0 1px 0 1px; - font-size: 0.95em; -} - -th, dl.field-list > dt { - background-color: #ede; -} - -.warning code { - background: #efc2c2; -} - -.note code { - background: #d6d6d6; -} - -.viewcode-back { - font-family: 'Palatino', 'Palatino Linotype', 'URW Palladio L', 'Century Schoolbook L', 'Georgia', serif; -} - -div.viewcode-block:target { - background-color: #f4debf; - border-top: 1px solid #ac9; - border-bottom: 1px solid #ac9; -} - -div.code-block-caption { - color: #efefef; - background-color: #1c4e63; -} \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.1.0/_static/copybutton.js b/static_root/doc/pdfgetx/2.1.0/_static/copybutton.js deleted file mode 100644 index ca9f489f..00000000 --- a/static_root/doc/pdfgetx/2.1.0/_static/copybutton.js +++ /dev/null @@ -1,57 +0,0 @@ -$(document).ready(function() { - /* Add a [>>>] button on the top-right corner of code samples to hide - * the >>> and ... prompts and the output and thus make the code - * copyable. */ - var div = $('.highlight-python .highlight,' + - '.highlight-pycon .highlight,' + - '.highlight-python3 .highlight') - var pre = div.find('pre'); - - // get the styles from the current theme - pre.parent().parent().css('position', 'relative'); - var hide_text = 'Hide the prompts and output'; - var show_text = 'Show the prompts and output'; - var border_width = pre.css('border-top-width'); - var border_style = pre.css('border-top-style'); - var border_color = pre.css('border-top-color'); - var button_styles = { - 'cursor':'pointer', 'position': 'absolute', 'top': '0', 'right': '0', - 'border-color': border_color, 'border-style': border_style, - 'border-width': border_width, 'color': border_color, 'text-size': '75%', - 'font-family': 'monospace', 'padding-left': '0.2em', 'padding-right': '0.2em', - 'border-radius': '0 3px 0 0' - } - - // create and add the button to all the code blocks that contain >>> - div.each(function(index) { - var jthis = $(this); - if (jthis.find('.gp').length > 0) { - var button = $('>>>'); - button.css(button_styles) - button.attr('title', hide_text); - jthis.prepend(button); - } - // tracebacks (.gt) contain bare text elements that need to be - // wrapped in a span to work with .nextUntil() (see later) - jthis.find('pre:has(.gt)').contents().filter(function() { - return ((this.nodeType == 3) && (this.data.trim().length > 0)); - }).wrap(''); - }); - - // define the behavior of the button when it's clicked - $('.copybutton').toggle( - function() { - var button = $(this); - button.parent().find('.go, .gp, .gt').hide(); - button.next('pre').find('.gt').nextUntil('.gp, .go').css('visibility', 'hidden'); - button.css('text-decoration', 'line-through'); - button.attr('title', show_text); - }, - function() { - var button = $(this); - button.parent().find('.go, .gp, .gt').show(); - button.next('pre').find('.gt').nextUntil('.gp, .go').css('visibility', 'visible'); - button.css('text-decoration', 'none'); - button.attr('title', hide_text); - }); -}); diff --git a/static_root/doc/pdfgetx/2.1.0/_static/doctools.js b/static_root/doc/pdfgetx/2.1.0/_static/doctools.js deleted file mode 100644 index daccd209..00000000 --- a/static_root/doc/pdfgetx/2.1.0/_static/doctools.js +++ /dev/null @@ -1,315 +0,0 @@ -/* - * doctools.js - * ~~~~~~~~~~~ - * - * Sphinx JavaScript utilities for all documentation. - * - * :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS. - * :license: BSD, see LICENSE for details. - * - */ - -/** - * select a different prefix for underscore - */ -$u = _.noConflict(); - -/** - * make the code below compatible with browsers without - * an installed firebug like debugger -if (!window.console || !console.firebug) { - var names = ["log", "debug", "info", "warn", "error", "assert", "dir", - "dirxml", "group", "groupEnd", "time", "timeEnd", "count", "trace", - "profile", "profileEnd"]; - window.console = {}; - for (var i = 0; i < names.length; ++i) - window.console[names[i]] = function() {}; -} - */ - -/** - * small helper function to urldecode strings - */ -jQuery.urldecode = function(x) { - return decodeURIComponent(x).replace(/\+/g, ' '); -}; - -/** - * small helper function to urlencode strings - */ -jQuery.urlencode = encodeURIComponent; - -/** - * This function returns the parsed url parameters of the - * current request. Multiple values per key are supported, - * it will always return arrays of strings for the value parts. - */ -jQuery.getQueryParameters = function(s) { - if (typeof s === 'undefined') - s = document.location.search; - var parts = s.substr(s.indexOf('?') + 1).split('&'); - var result = {}; - for (var i = 0; i < parts.length; i++) { - var tmp = parts[i].split('=', 2); - var key = jQuery.urldecode(tmp[0]); - var value = jQuery.urldecode(tmp[1]); - if (key in result) - result[key].push(value); - else - result[key] = [value]; - } - return result; -}; - -/** - * highlight a given string on a jquery object by wrapping it in - * span elements with the given class name. - */ -jQuery.fn.highlightText = function(text, className) { - function highlight(node, addItems) { - if (node.nodeType === 3) { - var val = node.nodeValue; - var pos = val.toLowerCase().indexOf(text); - if (pos >= 0 && - !jQuery(node.parentNode).hasClass(className) && - !jQuery(node.parentNode).hasClass("nohighlight")) { - var span; - var isInSVG = jQuery(node).closest("body, svg, foreignObject").is("svg"); - if (isInSVG) { - span = document.createElementNS("http://www.w3.org/2000/svg", "tspan"); - } else { - span = document.createElement("span"); - span.className = className; - } - span.appendChild(document.createTextNode(val.substr(pos, text.length))); - node.parentNode.insertBefore(span, node.parentNode.insertBefore( - document.createTextNode(val.substr(pos + text.length)), - node.nextSibling)); - node.nodeValue = val.substr(0, pos); - if (isInSVG) { - var rect = document.createElementNS("http://www.w3.org/2000/svg", "rect"); - var bbox = node.parentElement.getBBox(); - rect.x.baseVal.value = bbox.x; - rect.y.baseVal.value = bbox.y; - rect.width.baseVal.value = bbox.width; - rect.height.baseVal.value = bbox.height; - rect.setAttribute('class', className); - addItems.push({ - "parent": node.parentNode, - "target": rect}); - } - } - } - else if (!jQuery(node).is("button, select, textarea")) { - jQuery.each(node.childNodes, function() { - highlight(this, addItems); - }); - } - } - var addItems = []; - var result = this.each(function() { - highlight(this, addItems); - }); - for (var i = 0; i < addItems.length; ++i) { - jQuery(addItems[i].parent).before(addItems[i].target); - } - return result; -}; - -/* - * backward compatibility for jQuery.browser - * This will be supported until firefox bug is fixed. - */ -if (!jQuery.browser) { - jQuery.uaMatch = function(ua) { - ua = ua.toLowerCase(); - - var match = /(chrome)[ \/]([\w.]+)/.exec(ua) || - /(webkit)[ \/]([\w.]+)/.exec(ua) || - /(opera)(?:.*version|)[ \/]([\w.]+)/.exec(ua) || - /(msie) ([\w.]+)/.exec(ua) || - ua.indexOf("compatible") < 0 && /(mozilla)(?:.*? rv:([\w.]+)|)/.exec(ua) || - []; - - return { - browser: match[ 1 ] || "", - version: match[ 2 ] || "0" - }; - }; - jQuery.browser = {}; - jQuery.browser[jQuery.uaMatch(navigator.userAgent).browser] = true; -} - -/** - * Small JavaScript module for the documentation. - */ -var Documentation = { - - init : function() { - this.fixFirefoxAnchorBug(); - this.highlightSearchWords(); - this.initIndexTable(); - if (DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS) { - this.initOnKeyListeners(); - } - }, - - /** - * i18n support - */ - TRANSLATIONS : {}, - PLURAL_EXPR : function(n) { return n === 1 ? 0 : 1; }, - LOCALE : 'unknown', - - // gettext and ngettext don't access this so that the functions - // can safely bound to a different name (_ = Documentation.gettext) - gettext : function(string) { - var translated = Documentation.TRANSLATIONS[string]; - if (typeof translated === 'undefined') - return string; - return (typeof translated === 'string') ? translated : translated[0]; - }, - - ngettext : function(singular, plural, n) { - var translated = Documentation.TRANSLATIONS[singular]; - if (typeof translated === 'undefined') - return (n == 1) ? singular : plural; - return translated[Documentation.PLURALEXPR(n)]; - }, - - addTranslations : function(catalog) { - for (var key in catalog.messages) - this.TRANSLATIONS[key] = catalog.messages[key]; - this.PLURAL_EXPR = new Function('n', 'return +(' + catalog.plural_expr + ')'); - this.LOCALE = catalog.locale; - }, - - /** - * add context elements like header anchor links - */ - addContextElements : function() { - $('div[id] > :header:first').each(function() { - $('\u00B6'). - attr('href', '#' + this.id). - attr('title', _('Permalink to this headline')). - appendTo(this); - }); - $('dt[id]').each(function() { - $('\u00B6'). - attr('href', '#' + this.id). - attr('title', _('Permalink to this definition')). - appendTo(this); - }); - }, - - /** - * workaround a firefox stupidity - * see: https://bugzilla.mozilla.org/show_bug.cgi?id=645075 - */ - fixFirefoxAnchorBug : function() { - if (document.location.hash && $.browser.mozilla) - window.setTimeout(function() { - document.location.href += ''; - }, 10); - }, - - /** - * highlight the search words provided in the url in the text - */ - highlightSearchWords : function() { - var params = $.getQueryParameters(); - var terms = (params.highlight) ? params.highlight[0].split(/\s+/) : []; - if (terms.length) { - var body = $('div.body'); - if (!body.length) { - body = $('body'); - } - window.setTimeout(function() { - $.each(terms, function() { - body.highlightText(this.toLowerCase(), 'highlighted'); - }); - }, 10); - $('

    ' + _('Hide Search Matches') + '

    ') - .appendTo($('#searchbox')); - } - }, - - /** - * init the domain index toggle buttons - */ - initIndexTable : function() { - var togglers = $('img.toggler').click(function() { - var src = $(this).attr('src'); - var idnum = $(this).attr('id').substr(7); - $('tr.cg-' + idnum).toggle(); - if (src.substr(-9) === 'minus.png') - $(this).attr('src', src.substr(0, src.length-9) + 'plus.png'); - else - $(this).attr('src', src.substr(0, src.length-8) + 'minus.png'); - }).css('display', ''); - if (DOCUMENTATION_OPTIONS.COLLAPSE_INDEX) { - togglers.click(); - } - }, - - /** - * helper function to hide the search marks again - */ - hideSearchWords : function() { - $('#searchbox .highlight-link').fadeOut(300); - $('span.highlighted').removeClass('highlighted'); - }, - - /** - * make the url absolute - */ - makeURL : function(relativeURL) { - return DOCUMENTATION_OPTIONS.URL_ROOT + '/' + relativeURL; - }, - - /** - * get the current relative url - */ - getCurrentURL : function() { - var path = document.location.pathname; - var parts = path.split(/\//); - $.each(DOCUMENTATION_OPTIONS.URL_ROOT.split(/\//), function() { - if (this === '..') - parts.pop(); - }); - var url = parts.join('/'); - return path.substring(url.lastIndexOf('/') + 1, path.length - 1); - }, - - initOnKeyListeners: function() { - $(document).keydown(function(event) { - var activeElementType = document.activeElement.tagName; - // don't navigate when in search box or textarea - if (activeElementType !== 'TEXTAREA' && activeElementType !== 'INPUT' && activeElementType !== 'SELECT' - && !event.altKey && !event.ctrlKey && !event.metaKey && !event.shiftKey) { - switch (event.keyCode) { - case 37: // left - var prevHref = $('link[rel="prev"]').prop('href'); - if (prevHref) { - window.location.href = prevHref; - return false; - } - case 39: // right - var nextHref = $('link[rel="next"]').prop('href'); - if (nextHref) { - window.location.href = nextHref; - return false; - } - } - } - }); - } -}; - -// quick alias for translations -_ = Documentation.gettext; - -$(document).ready(function() { - Documentation.init(); -}); diff --git a/static_root/doc/pdfgetx/2.1.0/_static/documentation_options.js b/static_root/doc/pdfgetx/2.1.0/_static/documentation_options.js deleted file mode 100644 index 230e69bc..00000000 --- a/static_root/doc/pdfgetx/2.1.0/_static/documentation_options.js +++ /dev/null @@ -1,11 +0,0 @@ -var DOCUMENTATION_OPTIONS = { - URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'), - VERSION: '2.1.0', - LANGUAGE: 'None', - COLLAPSE_INDEX: false, - BUILDER: 'html', - FILE_SUFFIX: '.html', - HAS_SOURCE: true, - SOURCELINK_SUFFIX: '.txt', - NAVIGATION_WITH_KEYS: true -}; \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.1.0/_static/favicon.png b/static_root/doc/pdfgetx/2.1.0/_static/favicon.png deleted file mode 100644 index 93e4a02c..00000000 Binary files a/static_root/doc/pdfgetx/2.1.0/_static/favicon.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.1.0/_static/file.png b/static_root/doc/pdfgetx/2.1.0/_static/file.png deleted file mode 100644 index a858a410..00000000 Binary files a/static_root/doc/pdfgetx/2.1.0/_static/file.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.1.0/_static/jquery-3.4.1.js b/static_root/doc/pdfgetx/2.1.0/_static/jquery-3.4.1.js deleted file mode 100644 index 773ad95c..00000000 --- a/static_root/doc/pdfgetx/2.1.0/_static/jquery-3.4.1.js +++ /dev/null @@ -1,10598 +0,0 @@ -/*! - * jQuery JavaScript Library v3.4.1 - * https://jquery.com/ - * - * Includes Sizzle.js - * https://sizzlejs.com/ - * - * Copyright JS Foundation and other contributors - * Released under the MIT license - * https://jquery.org/license - * - * Date: 2019-05-01T21:04Z - */ -( function( global, factory ) { - - "use strict"; - - if ( typeof module === "object" && typeof module.exports === "object" ) { - - // For CommonJS and CommonJS-like environments where a proper `window` - // is present, execute the factory and get jQuery. - // For environments that do not have a `window` with a `document` - // (such as Node.js), expose a factory as module.exports. - // This accentuates the need for the creation of a real `window`. - // e.g. var jQuery = require("jquery")(window); - // See ticket #14549 for more info. - module.exports = global.document ? - factory( global, true ) : - function( w ) { - if ( !w.document ) { - throw new Error( "jQuery requires a window with a document" ); - } - return factory( w ); - }; - } else { - factory( global ); - } - -// Pass this if window is not defined yet -} )( typeof window !== "undefined" ? window : this, function( window, noGlobal ) { - -// Edge <= 12 - 13+, Firefox <=18 - 45+, IE 10 - 11, Safari 5.1 - 9+, iOS 6 - 9.1 -// throw exceptions when non-strict code (e.g., ASP.NET 4.5) accesses strict mode -// arguments.callee.caller (trac-13335). But as of jQuery 3.0 (2016), strict mode should be common -// enough that all such attempts are guarded in a try block. -"use strict"; - -var arr = []; - -var document = window.document; - -var getProto = Object.getPrototypeOf; - -var slice = arr.slice; - -var concat = arr.concat; - -var push = arr.push; - -var indexOf = arr.indexOf; - -var class2type = {}; - -var toString = class2type.toString; - -var hasOwn = class2type.hasOwnProperty; - -var fnToString = hasOwn.toString; - -var ObjectFunctionString = fnToString.call( Object ); - -var support = {}; - -var isFunction = function isFunction( obj ) { - - // Support: Chrome <=57, Firefox <=52 - // In some browsers, typeof returns "function" for HTML elements - // (i.e., `typeof document.createElement( "object" ) === "function"`). - // We don't want to classify *any* DOM node as a function. - return typeof obj === "function" && typeof obj.nodeType !== "number"; - }; - - -var isWindow = function isWindow( obj ) { - return obj != null && obj === obj.window; - }; - - - - - var preservedScriptAttributes = { - type: true, - src: true, - nonce: true, - noModule: true - }; - - function DOMEval( code, node, doc ) { - doc = doc || document; - - var i, val, - script = doc.createElement( "script" ); - - script.text = code; - if ( node ) { - for ( i in preservedScriptAttributes ) { - - // Support: Firefox 64+, Edge 18+ - // Some browsers don't support the "nonce" property on scripts. - // On the other hand, just using `getAttribute` is not enough as - // the `nonce` attribute is reset to an empty string whenever it - // becomes browsing-context connected. - // See https://github.com/whatwg/html/issues/2369 - // See https://html.spec.whatwg.org/#nonce-attributes - // The `node.getAttribute` check was added for the sake of - // `jQuery.globalEval` so that it can fake a nonce-containing node - // via an object. - val = node[ i ] || node.getAttribute && node.getAttribute( i ); - if ( val ) { - script.setAttribute( i, val ); - } - } - } - doc.head.appendChild( script ).parentNode.removeChild( script ); - } - - -function toType( obj ) { - if ( obj == null ) { - return obj + ""; - } - - // Support: Android <=2.3 only (functionish RegExp) - return typeof obj === "object" || typeof obj === "function" ? - class2type[ toString.call( obj ) ] || "object" : - typeof obj; -} -/* global Symbol */ -// Defining this global in .eslintrc.json would create a danger of using the global -// unguarded in another place, it seems safer to define global only for this module - - - -var - version = "3.4.1", - - // Define a local copy of jQuery - jQuery = function( selector, context ) { - - // The jQuery object is actually just the init constructor 'enhanced' - // Need init if jQuery is called (just allow error to be thrown if not included) - return new jQuery.fn.init( selector, context ); - }, - - // Support: Android <=4.0 only - // Make sure we trim BOM and NBSP - rtrim = /^[\s\uFEFF\xA0]+|[\s\uFEFF\xA0]+$/g; - -jQuery.fn = jQuery.prototype = { - - // The current version of jQuery being used - jquery: version, - - constructor: jQuery, - - // The default length of a jQuery object is 0 - length: 0, - - toArray: function() { - return slice.call( this ); - }, - - // Get the Nth element in the matched element set OR - // Get the whole matched element set as a clean array - get: function( num ) { - - // Return all the elements in a clean array - if ( num == null ) { - return slice.call( this ); - } - - // Return just the one element from the set - return num < 0 ? this[ num + this.length ] : this[ num ]; - }, - - // Take an array of elements and push it onto the stack - // (returning the new matched element set) - pushStack: function( elems ) { - - // Build a new jQuery matched element set - var ret = jQuery.merge( this.constructor(), elems ); - - // Add the old object onto the stack (as a reference) - ret.prevObject = this; - - // Return the newly-formed element set - return ret; - }, - - // Execute a callback for every element in the matched set. - each: function( callback ) { - return jQuery.each( this, callback ); - }, - - map: function( callback ) { - return this.pushStack( jQuery.map( this, function( elem, i ) { - return callback.call( elem, i, elem ); - } ) ); - }, - - slice: function() { - return this.pushStack( slice.apply( this, arguments ) ); - }, - - first: function() { - return this.eq( 0 ); - }, - - last: function() { - return this.eq( -1 ); - }, - - eq: function( i ) { - var len = this.length, - j = +i + ( i < 0 ? len : 0 ); - return this.pushStack( j >= 0 && j < len ? [ this[ j ] ] : [] ); - }, - - end: function() { - return this.prevObject || this.constructor(); - }, - - // For internal use only. - // Behaves like an Array's method, not like a jQuery method. - push: push, - sort: arr.sort, - splice: arr.splice -}; - -jQuery.extend = jQuery.fn.extend = function() { - var options, name, src, copy, copyIsArray, clone, - target = arguments[ 0 ] || {}, - i = 1, - length = arguments.length, - deep = false; - - // Handle a deep copy situation - if ( typeof target === "boolean" ) { - deep = target; - - // Skip the boolean and the target - target = arguments[ i ] || {}; - i++; - } - - // Handle case when target is a string or something (possible in deep copy) - if ( typeof target !== "object" && !isFunction( target ) ) { - target = {}; - } - - // Extend jQuery itself if only one argument is passed - if ( i === length ) { - target = this; - i--; - } - - for ( ; i < length; i++ ) { - - // Only deal with non-null/undefined values - if ( ( options = arguments[ i ] ) != null ) { - - // Extend the base object - for ( name in options ) { - copy = options[ name ]; - - // Prevent Object.prototype pollution - // Prevent never-ending loop - if ( name === "__proto__" || target === copy ) { - continue; - } - - // Recurse if we're merging plain objects or arrays - if ( deep && copy && ( jQuery.isPlainObject( copy ) || - ( copyIsArray = Array.isArray( copy ) ) ) ) { - src = target[ name ]; - - // Ensure proper type for the source value - if ( copyIsArray && !Array.isArray( src ) ) { - clone = []; - } else if ( !copyIsArray && !jQuery.isPlainObject( src ) ) { - clone = {}; - } else { - clone = src; - } - copyIsArray = false; - - // Never move original objects, clone them - target[ name ] = jQuery.extend( deep, clone, copy ); - - // Don't bring in undefined values - } else if ( copy !== undefined ) { - target[ name ] = copy; - } - } - } - } - - // Return the modified object - return target; -}; - -jQuery.extend( { - - // Unique for each copy of jQuery on the page - expando: "jQuery" + ( version + Math.random() ).replace( /\D/g, "" ), - - // Assume jQuery is ready without the ready module - isReady: true, - - error: function( msg ) { - throw new Error( msg ); - }, - - noop: function() {}, - - isPlainObject: function( obj ) { - var proto, Ctor; - - // Detect obvious negatives - // Use toString instead of jQuery.type to catch host objects - if ( !obj || toString.call( obj ) !== "[object Object]" ) { - return false; - } - - proto = getProto( obj ); - - // Objects with no prototype (e.g., `Object.create( null )`) are plain - if ( !proto ) { - return true; - } - - // Objects with prototype are plain iff they were constructed by a global Object function - Ctor = hasOwn.call( proto, "constructor" ) && proto.constructor; - return typeof Ctor === "function" && fnToString.call( Ctor ) === ObjectFunctionString; - }, - - isEmptyObject: function( obj ) { - var name; - - for ( name in obj ) { - return false; - } - return true; - }, - - // Evaluates a script in a global context - globalEval: function( code, options ) { - DOMEval( code, { nonce: options && options.nonce } ); - }, - - each: function( obj, callback ) { - var length, i = 0; - - if ( isArrayLike( obj ) ) { - length = obj.length; - for ( ; i < length; i++ ) { - if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) { - break; - } - } - } else { - for ( i in obj ) { - if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) { - break; - } - } - } - - return obj; - }, - - // Support: Android <=4.0 only - trim: function( text ) { - return text == null ? - "" : - ( text + "" ).replace( rtrim, "" ); - }, - - // results is for internal usage only - makeArray: function( arr, results ) { - var ret = results || []; - - if ( arr != null ) { - if ( isArrayLike( Object( arr ) ) ) { - jQuery.merge( ret, - typeof arr === "string" ? - [ arr ] : arr - ); - } else { - push.call( ret, arr ); - } - } - - return ret; - }, - - inArray: function( elem, arr, i ) { - return arr == null ? -1 : indexOf.call( arr, elem, i ); - }, - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - merge: function( first, second ) { - var len = +second.length, - j = 0, - i = first.length; - - for ( ; j < len; j++ ) { - first[ i++ ] = second[ j ]; - } - - first.length = i; - - return first; - }, - - grep: function( elems, callback, invert ) { - var callbackInverse, - matches = [], - i = 0, - length = elems.length, - callbackExpect = !invert; - - // Go through the array, only saving the items - // that pass the validator function - for ( ; i < length; i++ ) { - callbackInverse = !callback( elems[ i ], i ); - if ( callbackInverse !== callbackExpect ) { - matches.push( elems[ i ] ); - } - } - - return matches; - }, - - // arg is for internal usage only - map: function( elems, callback, arg ) { - var length, value, - i = 0, - ret = []; - - // Go through the array, translating each of the items to their new values - if ( isArrayLike( elems ) ) { - length = elems.length; - for ( ; i < length; i++ ) { - value = callback( elems[ i ], i, arg ); - - if ( value != null ) { - ret.push( value ); - } - } - - // Go through every key on the object, - } else { - for ( i in elems ) { - value = callback( elems[ i ], i, arg ); - - if ( value != null ) { - ret.push( value ); - } - } - } - - // Flatten any nested arrays - return concat.apply( [], ret ); - }, - - // A global GUID counter for objects - guid: 1, - - // jQuery.support is not used in Core but other projects attach their - // properties to it so it needs to exist. - support: support -} ); - -if ( typeof Symbol === "function" ) { - jQuery.fn[ Symbol.iterator ] = arr[ Symbol.iterator ]; -} - -// Populate the class2type map -jQuery.each( "Boolean Number String Function Array Date RegExp Object Error Symbol".split( " " ), -function( i, name ) { - class2type[ "[object " + name + "]" ] = name.toLowerCase(); -} ); - -function isArrayLike( obj ) { - - // Support: real iOS 8.2 only (not reproducible in simulator) - // `in` check used to prevent JIT error (gh-2145) - // hasOwn isn't used here due to false negatives - // regarding Nodelist length in IE - var length = !!obj && "length" in obj && obj.length, - type = toType( obj ); - - if ( isFunction( obj ) || isWindow( obj ) ) { - return false; - } - - return type === "array" || length === 0 || - typeof length === "number" && length > 0 && ( length - 1 ) in obj; -} -var Sizzle = -/*! - * Sizzle CSS Selector Engine v2.3.4 - * https://sizzlejs.com/ - * - * Copyright JS Foundation and other contributors - * Released under the MIT license - * https://js.foundation/ - * - * Date: 2019-04-08 - */ -(function( window ) { - -var i, - support, - Expr, - getText, - isXML, - tokenize, - compile, - select, - outermostContext, - sortInput, - hasDuplicate, - - // Local document vars - setDocument, - document, - docElem, - documentIsHTML, - rbuggyQSA, - rbuggyMatches, - matches, - contains, - - // Instance-specific data - expando = "sizzle" + 1 * new Date(), - preferredDoc = window.document, - dirruns = 0, - done = 0, - classCache = createCache(), - tokenCache = createCache(), - compilerCache = createCache(), - nonnativeSelectorCache = createCache(), - sortOrder = function( a, b ) { - if ( a === b ) { - hasDuplicate = true; - } - return 0; - }, - - // Instance methods - hasOwn = ({}).hasOwnProperty, - arr = [], - pop = arr.pop, - push_native = arr.push, - push = arr.push, - slice = arr.slice, - // Use a stripped-down indexOf as it's faster than native - // https://jsperf.com/thor-indexof-vs-for/5 - indexOf = function( list, elem ) { - var i = 0, - len = list.length; - for ( ; i < len; i++ ) { - if ( list[i] === elem ) { - return i; - } - } - return -1; - }, - - booleans = "checked|selected|async|autofocus|autoplay|controls|defer|disabled|hidden|ismap|loop|multiple|open|readonly|required|scoped", - - // Regular expressions - - // http://www.w3.org/TR/css3-selectors/#whitespace - whitespace = "[\\x20\\t\\r\\n\\f]", - - // http://www.w3.org/TR/CSS21/syndata.html#value-def-identifier - identifier = "(?:\\\\.|[\\w-]|[^\0-\\xa0])+", - - // Attribute selectors: http://www.w3.org/TR/selectors/#attribute-selectors - attributes = "\\[" + whitespace + "*(" + identifier + ")(?:" + whitespace + - // Operator (capture 2) - "*([*^$|!~]?=)" + whitespace + - // "Attribute values must be CSS identifiers [capture 5] or strings [capture 3 or capture 4]" - "*(?:'((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\"|(" + identifier + "))|)" + whitespace + - "*\\]", - - pseudos = ":(" + identifier + ")(?:\\((" + - // To reduce the number of selectors needing tokenize in the preFilter, prefer arguments: - // 1. quoted (capture 3; capture 4 or capture 5) - "('((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\")|" + - // 2. simple (capture 6) - "((?:\\\\.|[^\\\\()[\\]]|" + attributes + ")*)|" + - // 3. anything else (capture 2) - ".*" + - ")\\)|)", - - // Leading and non-escaped trailing whitespace, capturing some non-whitespace characters preceding the latter - rwhitespace = new RegExp( whitespace + "+", "g" ), - rtrim = new RegExp( "^" + whitespace + "+|((?:^|[^\\\\])(?:\\\\.)*)" + whitespace + "+$", "g" ), - - rcomma = new RegExp( "^" + whitespace + "*," + whitespace + "*" ), - rcombinators = new RegExp( "^" + whitespace + "*([>+~]|" + whitespace + ")" + whitespace + "*" ), - rdescend = new RegExp( whitespace + "|>" ), - - rpseudo = new RegExp( pseudos ), - ridentifier = new RegExp( "^" + identifier + "$" ), - - matchExpr = { - "ID": new RegExp( "^#(" + identifier + ")" ), - "CLASS": new RegExp( "^\\.(" + identifier + ")" ), - "TAG": new RegExp( "^(" + identifier + "|[*])" ), - "ATTR": new RegExp( "^" + attributes ), - "PSEUDO": new RegExp( "^" + pseudos ), - "CHILD": new RegExp( "^:(only|first|last|nth|nth-last)-(child|of-type)(?:\\(" + whitespace + - "*(even|odd|(([+-]|)(\\d*)n|)" + whitespace + "*(?:([+-]|)" + whitespace + - "*(\\d+)|))" + whitespace + "*\\)|)", "i" ), - "bool": new RegExp( "^(?:" + booleans + ")$", "i" ), - // For use in libraries implementing .is() - // We use this for POS matching in `select` - "needsContext": new RegExp( "^" + whitespace + "*[>+~]|:(even|odd|eq|gt|lt|nth|first|last)(?:\\(" + - whitespace + "*((?:-\\d)?\\d*)" + whitespace + "*\\)|)(?=[^-]|$)", "i" ) - }, - - rhtml = /HTML$/i, - rinputs = /^(?:input|select|textarea|button)$/i, - rheader = /^h\d$/i, - - rnative = /^[^{]+\{\s*\[native \w/, - - // Easily-parseable/retrievable ID or TAG or CLASS selectors - rquickExpr = /^(?:#([\w-]+)|(\w+)|\.([\w-]+))$/, - - rsibling = /[+~]/, - - // CSS escapes - // http://www.w3.org/TR/CSS21/syndata.html#escaped-characters - runescape = new RegExp( "\\\\([\\da-f]{1,6}" + whitespace + "?|(" + whitespace + ")|.)", "ig" ), - funescape = function( _, escaped, escapedWhitespace ) { - var high = "0x" + escaped - 0x10000; - // NaN means non-codepoint - // Support: Firefox<24 - // Workaround erroneous numeric interpretation of +"0x" - return high !== high || escapedWhitespace ? - escaped : - high < 0 ? - // BMP codepoint - String.fromCharCode( high + 0x10000 ) : - // Supplemental Plane codepoint (surrogate pair) - String.fromCharCode( high >> 10 | 0xD800, high & 0x3FF | 0xDC00 ); - }, - - // CSS string/identifier serialization - // https://drafts.csswg.org/cssom/#common-serializing-idioms - rcssescape = /([\0-\x1f\x7f]|^-?\d)|^-$|[^\0-\x1f\x7f-\uFFFF\w-]/g, - fcssescape = function( ch, asCodePoint ) { - if ( asCodePoint ) { - - // U+0000 NULL becomes U+FFFD REPLACEMENT CHARACTER - if ( ch === "\0" ) { - return "\uFFFD"; - } - - // Control characters and (dependent upon position) numbers get escaped as code points - return ch.slice( 0, -1 ) + "\\" + ch.charCodeAt( ch.length - 1 ).toString( 16 ) + " "; - } - - // Other potentially-special ASCII characters get backslash-escaped - return "\\" + ch; - }, - - // Used for iframes - // See setDocument() - // Removing the function wrapper causes a "Permission Denied" - // error in IE - unloadHandler = function() { - setDocument(); - }, - - inDisabledFieldset = addCombinator( - function( elem ) { - return elem.disabled === true && elem.nodeName.toLowerCase() === "fieldset"; - }, - { dir: "parentNode", next: "legend" } - ); - -// Optimize for push.apply( _, NodeList ) -try { - push.apply( - (arr = slice.call( preferredDoc.childNodes )), - preferredDoc.childNodes - ); - // Support: Android<4.0 - // Detect silently failing push.apply - arr[ preferredDoc.childNodes.length ].nodeType; -} catch ( e ) { - push = { apply: arr.length ? - - // Leverage slice if possible - function( target, els ) { - push_native.apply( target, slice.call(els) ); - } : - - // Support: IE<9 - // Otherwise append directly - function( target, els ) { - var j = target.length, - i = 0; - // Can't trust NodeList.length - while ( (target[j++] = els[i++]) ) {} - target.length = j - 1; - } - }; -} - -function Sizzle( selector, context, results, seed ) { - var m, i, elem, nid, match, groups, newSelector, - newContext = context && context.ownerDocument, - - // nodeType defaults to 9, since context defaults to document - nodeType = context ? context.nodeType : 9; - - results = results || []; - - // Return early from calls with invalid selector or context - if ( typeof selector !== "string" || !selector || - nodeType !== 1 && nodeType !== 9 && nodeType !== 11 ) { - - return results; - } - - // Try to shortcut find operations (as opposed to filters) in HTML documents - if ( !seed ) { - - if ( ( context ? context.ownerDocument || context : preferredDoc ) !== document ) { - setDocument( context ); - } - context = context || document; - - if ( documentIsHTML ) { - - // If the selector is sufficiently simple, try using a "get*By*" DOM method - // (excepting DocumentFragment context, where the methods don't exist) - if ( nodeType !== 11 && (match = rquickExpr.exec( selector )) ) { - - // ID selector - if ( (m = match[1]) ) { - - // Document context - if ( nodeType === 9 ) { - if ( (elem = context.getElementById( m )) ) { - - // Support: IE, Opera, Webkit - // TODO: identify versions - // getElementById can match elements by name instead of ID - if ( elem.id === m ) { - results.push( elem ); - return results; - } - } else { - return results; - } - - // Element context - } else { - - // Support: IE, Opera, Webkit - // TODO: identify versions - // getElementById can match elements by name instead of ID - if ( newContext && (elem = newContext.getElementById( m )) && - contains( context, elem ) && - elem.id === m ) { - - results.push( elem ); - return results; - } - } - - // Type selector - } else if ( match[2] ) { - push.apply( results, context.getElementsByTagName( selector ) ); - return results; - - // Class selector - } else if ( (m = match[3]) && support.getElementsByClassName && - context.getElementsByClassName ) { - - push.apply( results, context.getElementsByClassName( m ) ); - return results; - } - } - - // Take advantage of querySelectorAll - if ( support.qsa && - !nonnativeSelectorCache[ selector + " " ] && - (!rbuggyQSA || !rbuggyQSA.test( selector )) && - - // Support: IE 8 only - // Exclude object elements - (nodeType !== 1 || context.nodeName.toLowerCase() !== "object") ) { - - newSelector = selector; - newContext = context; - - // qSA considers elements outside a scoping root when evaluating child or - // descendant combinators, which is not what we want. - // In such cases, we work around the behavior by prefixing every selector in the - // list with an ID selector referencing the scope context. - // Thanks to Andrew Dupont for this technique. - if ( nodeType === 1 && rdescend.test( selector ) ) { - - // Capture the context ID, setting it first if necessary - if ( (nid = context.getAttribute( "id" )) ) { - nid = nid.replace( rcssescape, fcssescape ); - } else { - context.setAttribute( "id", (nid = expando) ); - } - - // Prefix every selector in the list - groups = tokenize( selector ); - i = groups.length; - while ( i-- ) { - groups[i] = "#" + nid + " " + toSelector( groups[i] ); - } - newSelector = groups.join( "," ); - - // Expand context for sibling selectors - newContext = rsibling.test( selector ) && testContext( context.parentNode ) || - context; - } - - try { - push.apply( results, - newContext.querySelectorAll( newSelector ) - ); - return results; - } catch ( qsaError ) { - nonnativeSelectorCache( selector, true ); - } finally { - if ( nid === expando ) { - context.removeAttribute( "id" ); - } - } - } - } - } - - // All others - return select( selector.replace( rtrim, "$1" ), context, results, seed ); -} - -/** - * Create key-value caches of limited size - * @returns {function(string, object)} Returns the Object data after storing it on itself with - * property name the (space-suffixed) string and (if the cache is larger than Expr.cacheLength) - * deleting the oldest entry - */ -function createCache() { - var keys = []; - - function cache( key, value ) { - // Use (key + " ") to avoid collision with native prototype properties (see Issue #157) - if ( keys.push( key + " " ) > Expr.cacheLength ) { - // Only keep the most recent entries - delete cache[ keys.shift() ]; - } - return (cache[ key + " " ] = value); - } - return cache; -} - -/** - * Mark a function for special use by Sizzle - * @param {Function} fn The function to mark - */ -function markFunction( fn ) { - fn[ expando ] = true; - return fn; -} - -/** - * Support testing using an element - * @param {Function} fn Passed the created element and returns a boolean result - */ -function assert( fn ) { - var el = document.createElement("fieldset"); - - try { - return !!fn( el ); - } catch (e) { - return false; - } finally { - // Remove from its parent by default - if ( el.parentNode ) { - el.parentNode.removeChild( el ); - } - // release memory in IE - el = null; - } -} - -/** - * Adds the same handler for all of the specified attrs - * @param {String} attrs Pipe-separated list of attributes - * @param {Function} handler The method that will be applied - */ -function addHandle( attrs, handler ) { - var arr = attrs.split("|"), - i = arr.length; - - while ( i-- ) { - Expr.attrHandle[ arr[i] ] = handler; - } -} - -/** - * Checks document order of two siblings - * @param {Element} a - * @param {Element} b - * @returns {Number} Returns less than 0 if a precedes b, greater than 0 if a follows b - */ -function siblingCheck( a, b ) { - var cur = b && a, - diff = cur && a.nodeType === 1 && b.nodeType === 1 && - a.sourceIndex - b.sourceIndex; - - // Use IE sourceIndex if available on both nodes - if ( diff ) { - return diff; - } - - // Check if b follows a - if ( cur ) { - while ( (cur = cur.nextSibling) ) { - if ( cur === b ) { - return -1; - } - } - } - - return a ? 1 : -1; -} - -/** - * Returns a function to use in pseudos for input types - * @param {String} type - */ -function createInputPseudo( type ) { - return function( elem ) { - var name = elem.nodeName.toLowerCase(); - return name === "input" && elem.type === type; - }; -} - -/** - * Returns a function to use in pseudos for buttons - * @param {String} type - */ -function createButtonPseudo( type ) { - return function( elem ) { - var name = elem.nodeName.toLowerCase(); - return (name === "input" || name === "button") && elem.type === type; - }; -} - -/** - * Returns a function to use in pseudos for :enabled/:disabled - * @param {Boolean} disabled true for :disabled; false for :enabled - */ -function createDisabledPseudo( disabled ) { - - // Known :disabled false positives: fieldset[disabled] > legend:nth-of-type(n+2) :can-disable - return function( elem ) { - - // Only certain elements can match :enabled or :disabled - // https://html.spec.whatwg.org/multipage/scripting.html#selector-enabled - // https://html.spec.whatwg.org/multipage/scripting.html#selector-disabled - if ( "form" in elem ) { - - // Check for inherited disabledness on relevant non-disabled elements: - // * listed form-associated elements in a disabled fieldset - // https://html.spec.whatwg.org/multipage/forms.html#category-listed - // https://html.spec.whatwg.org/multipage/forms.html#concept-fe-disabled - // * option elements in a disabled optgroup - // https://html.spec.whatwg.org/multipage/forms.html#concept-option-disabled - // All such elements have a "form" property. - if ( elem.parentNode && elem.disabled === false ) { - - // Option elements defer to a parent optgroup if present - if ( "label" in elem ) { - if ( "label" in elem.parentNode ) { - return elem.parentNode.disabled === disabled; - } else { - return elem.disabled === disabled; - } - } - - // Support: IE 6 - 11 - // Use the isDisabled shortcut property to check for disabled fieldset ancestors - return elem.isDisabled === disabled || - - // Where there is no isDisabled, check manually - /* jshint -W018 */ - elem.isDisabled !== !disabled && - inDisabledFieldset( elem ) === disabled; - } - - return elem.disabled === disabled; - - // Try to winnow out elements that can't be disabled before trusting the disabled property. - // Some victims get caught in our net (label, legend, menu, track), but it shouldn't - // even exist on them, let alone have a boolean value. - } else if ( "label" in elem ) { - return elem.disabled === disabled; - } - - // Remaining elements are neither :enabled nor :disabled - return false; - }; -} - -/** - * Returns a function to use in pseudos for positionals - * @param {Function} fn - */ -function createPositionalPseudo( fn ) { - return markFunction(function( argument ) { - argument = +argument; - return markFunction(function( seed, matches ) { - var j, - matchIndexes = fn( [], seed.length, argument ), - i = matchIndexes.length; - - // Match elements found at the specified indexes - while ( i-- ) { - if ( seed[ (j = matchIndexes[i]) ] ) { - seed[j] = !(matches[j] = seed[j]); - } - } - }); - }); -} - -/** - * Checks a node for validity as a Sizzle context - * @param {Element|Object=} context - * @returns {Element|Object|Boolean} The input node if acceptable, otherwise a falsy value - */ -function testContext( context ) { - return context && typeof context.getElementsByTagName !== "undefined" && context; -} - -// Expose support vars for convenience -support = Sizzle.support = {}; - -/** - * Detects XML nodes - * @param {Element|Object} elem An element or a document - * @returns {Boolean} True iff elem is a non-HTML XML node - */ -isXML = Sizzle.isXML = function( elem ) { - var namespace = elem.namespaceURI, - docElem = (elem.ownerDocument || elem).documentElement; - - // Support: IE <=8 - // Assume HTML when documentElement doesn't yet exist, such as inside loading iframes - // https://bugs.jquery.com/ticket/4833 - return !rhtml.test( namespace || docElem && docElem.nodeName || "HTML" ); -}; - -/** - * Sets document-related variables once based on the current document - * @param {Element|Object} [doc] An element or document object to use to set the document - * @returns {Object} Returns the current document - */ -setDocument = Sizzle.setDocument = function( node ) { - var hasCompare, subWindow, - doc = node ? node.ownerDocument || node : preferredDoc; - - // Return early if doc is invalid or already selected - if ( doc === document || doc.nodeType !== 9 || !doc.documentElement ) { - return document; - } - - // Update global variables - document = doc; - docElem = document.documentElement; - documentIsHTML = !isXML( document ); - - // Support: IE 9-11, Edge - // Accessing iframe documents after unload throws "permission denied" errors (jQuery #13936) - if ( preferredDoc !== document && - (subWindow = document.defaultView) && subWindow.top !== subWindow ) { - - // Support: IE 11, Edge - if ( subWindow.addEventListener ) { - subWindow.addEventListener( "unload", unloadHandler, false ); - - // Support: IE 9 - 10 only - } else if ( subWindow.attachEvent ) { - subWindow.attachEvent( "onunload", unloadHandler ); - } - } - - /* Attributes - ---------------------------------------------------------------------- */ - - // Support: IE<8 - // Verify that getAttribute really returns attributes and not properties - // (excepting IE8 booleans) - support.attributes = assert(function( el ) { - el.className = "i"; - return !el.getAttribute("className"); - }); - - /* getElement(s)By* - ---------------------------------------------------------------------- */ - - // Check if getElementsByTagName("*") returns only elements - support.getElementsByTagName = assert(function( el ) { - el.appendChild( document.createComment("") ); - return !el.getElementsByTagName("*").length; - }); - - // Support: IE<9 - support.getElementsByClassName = rnative.test( document.getElementsByClassName ); - - // Support: IE<10 - // Check if getElementById returns elements by name - // The broken getElementById methods don't pick up programmatically-set names, - // so use a roundabout getElementsByName test - support.getById = assert(function( el ) { - docElem.appendChild( el ).id = expando; - return !document.getElementsByName || !document.getElementsByName( expando ).length; - }); - - // ID filter and find - if ( support.getById ) { - Expr.filter["ID"] = function( id ) { - var attrId = id.replace( runescape, funescape ); - return function( elem ) { - return elem.getAttribute("id") === attrId; - }; - }; - Expr.find["ID"] = function( id, context ) { - if ( typeof context.getElementById !== "undefined" && documentIsHTML ) { - var elem = context.getElementById( id ); - return elem ? [ elem ] : []; - } - }; - } else { - Expr.filter["ID"] = function( id ) { - var attrId = id.replace( runescape, funescape ); - return function( elem ) { - var node = typeof elem.getAttributeNode !== "undefined" && - elem.getAttributeNode("id"); - return node && node.value === attrId; - }; - }; - - // Support: IE 6 - 7 only - // getElementById is not reliable as a find shortcut - Expr.find["ID"] = function( id, context ) { - if ( typeof context.getElementById !== "undefined" && documentIsHTML ) { - var node, i, elems, - elem = context.getElementById( id ); - - if ( elem ) { - - // Verify the id attribute - node = elem.getAttributeNode("id"); - if ( node && node.value === id ) { - return [ elem ]; - } - - // Fall back on getElementsByName - elems = context.getElementsByName( id ); - i = 0; - while ( (elem = elems[i++]) ) { - node = elem.getAttributeNode("id"); - if ( node && node.value === id ) { - return [ elem ]; - } - } - } - - return []; - } - }; - } - - // Tag - Expr.find["TAG"] = support.getElementsByTagName ? - function( tag, context ) { - if ( typeof context.getElementsByTagName !== "undefined" ) { - return context.getElementsByTagName( tag ); - - // DocumentFragment nodes don't have gEBTN - } else if ( support.qsa ) { - return context.querySelectorAll( tag ); - } - } : - - function( tag, context ) { - var elem, - tmp = [], - i = 0, - // By happy coincidence, a (broken) gEBTN appears on DocumentFragment nodes too - results = context.getElementsByTagName( tag ); - - // Filter out possible comments - if ( tag === "*" ) { - while ( (elem = results[i++]) ) { - if ( elem.nodeType === 1 ) { - tmp.push( elem ); - } - } - - return tmp; - } - return results; - }; - - // Class - Expr.find["CLASS"] = support.getElementsByClassName && function( className, context ) { - if ( typeof context.getElementsByClassName !== "undefined" && documentIsHTML ) { - return context.getElementsByClassName( className ); - } - }; - - /* QSA/matchesSelector - ---------------------------------------------------------------------- */ - - // QSA and matchesSelector support - - // matchesSelector(:active) reports false when true (IE9/Opera 11.5) - rbuggyMatches = []; - - // qSa(:focus) reports false when true (Chrome 21) - // We allow this because of a bug in IE8/9 that throws an error - // whenever `document.activeElement` is accessed on an iframe - // So, we allow :focus to pass through QSA all the time to avoid the IE error - // See https://bugs.jquery.com/ticket/13378 - rbuggyQSA = []; - - if ( (support.qsa = rnative.test( document.querySelectorAll )) ) { - // Build QSA regex - // Regex strategy adopted from Diego Perini - assert(function( el ) { - // Select is set to empty string on purpose - // This is to test IE's treatment of not explicitly - // setting a boolean content attribute, - // since its presence should be enough - // https://bugs.jquery.com/ticket/12359 - docElem.appendChild( el ).innerHTML = "" + - ""; - - // Support: IE8, Opera 11-12.16 - // Nothing should be selected when empty strings follow ^= or $= or *= - // The test attribute must be unknown in Opera but "safe" for WinRT - // https://msdn.microsoft.com/en-us/library/ie/hh465388.aspx#attribute_section - if ( el.querySelectorAll("[msallowcapture^='']").length ) { - rbuggyQSA.push( "[*^$]=" + whitespace + "*(?:''|\"\")" ); - } - - // Support: IE8 - // Boolean attributes and "value" are not treated correctly - if ( !el.querySelectorAll("[selected]").length ) { - rbuggyQSA.push( "\\[" + whitespace + "*(?:value|" + booleans + ")" ); - } - - // Support: Chrome<29, Android<4.4, Safari<7.0+, iOS<7.0+, PhantomJS<1.9.8+ - if ( !el.querySelectorAll( "[id~=" + expando + "-]" ).length ) { - rbuggyQSA.push("~="); - } - - // Webkit/Opera - :checked should return selected option elements - // http://www.w3.org/TR/2011/REC-css3-selectors-20110929/#checked - // IE8 throws error here and will not see later tests - if ( !el.querySelectorAll(":checked").length ) { - rbuggyQSA.push(":checked"); - } - - // Support: Safari 8+, iOS 8+ - // https://bugs.webkit.org/show_bug.cgi?id=136851 - // In-page `selector#id sibling-combinator selector` fails - if ( !el.querySelectorAll( "a#" + expando + "+*" ).length ) { - rbuggyQSA.push(".#.+[+~]"); - } - }); - - assert(function( el ) { - el.innerHTML = "" + - ""; - - // Support: Windows 8 Native Apps - // The type and name attributes are restricted during .innerHTML assignment - var input = document.createElement("input"); - input.setAttribute( "type", "hidden" ); - el.appendChild( input ).setAttribute( "name", "D" ); - - // Support: IE8 - // Enforce case-sensitivity of name attribute - if ( el.querySelectorAll("[name=d]").length ) { - rbuggyQSA.push( "name" + whitespace + "*[*^$|!~]?=" ); - } - - // FF 3.5 - :enabled/:disabled and hidden elements (hidden elements are still enabled) - // IE8 throws error here and will not see later tests - if ( el.querySelectorAll(":enabled").length !== 2 ) { - rbuggyQSA.push( ":enabled", ":disabled" ); - } - - // Support: IE9-11+ - // IE's :disabled selector does not pick up the children of disabled fieldsets - docElem.appendChild( el ).disabled = true; - if ( el.querySelectorAll(":disabled").length !== 2 ) { - rbuggyQSA.push( ":enabled", ":disabled" ); - } - - // Opera 10-11 does not throw on post-comma invalid pseudos - el.querySelectorAll("*,:x"); - rbuggyQSA.push(",.*:"); - }); - } - - if ( (support.matchesSelector = rnative.test( (matches = docElem.matches || - docElem.webkitMatchesSelector || - docElem.mozMatchesSelector || - docElem.oMatchesSelector || - docElem.msMatchesSelector) )) ) { - - assert(function( el ) { - // Check to see if it's possible to do matchesSelector - // on a disconnected node (IE 9) - support.disconnectedMatch = matches.call( el, "*" ); - - // This should fail with an exception - // Gecko does not error, returns false instead - matches.call( el, "[s!='']:x" ); - rbuggyMatches.push( "!=", pseudos ); - }); - } - - rbuggyQSA = rbuggyQSA.length && new RegExp( rbuggyQSA.join("|") ); - rbuggyMatches = rbuggyMatches.length && new RegExp( rbuggyMatches.join("|") ); - - /* Contains - ---------------------------------------------------------------------- */ - hasCompare = rnative.test( docElem.compareDocumentPosition ); - - // Element contains another - // Purposefully self-exclusive - // As in, an element does not contain itself - contains = hasCompare || rnative.test( docElem.contains ) ? - function( a, b ) { - var adown = a.nodeType === 9 ? a.documentElement : a, - bup = b && b.parentNode; - return a === bup || !!( bup && bup.nodeType === 1 && ( - adown.contains ? - adown.contains( bup ) : - a.compareDocumentPosition && a.compareDocumentPosition( bup ) & 16 - )); - } : - function( a, b ) { - if ( b ) { - while ( (b = b.parentNode) ) { - if ( b === a ) { - return true; - } - } - } - return false; - }; - - /* Sorting - ---------------------------------------------------------------------- */ - - // Document order sorting - sortOrder = hasCompare ? - function( a, b ) { - - // Flag for duplicate removal - if ( a === b ) { - hasDuplicate = true; - return 0; - } - - // Sort on method existence if only one input has compareDocumentPosition - var compare = !a.compareDocumentPosition - !b.compareDocumentPosition; - if ( compare ) { - return compare; - } - - // Calculate position if both inputs belong to the same document - compare = ( a.ownerDocument || a ) === ( b.ownerDocument || b ) ? - a.compareDocumentPosition( b ) : - - // Otherwise we know they are disconnected - 1; - - // Disconnected nodes - if ( compare & 1 || - (!support.sortDetached && b.compareDocumentPosition( a ) === compare) ) { - - // Choose the first element that is related to our preferred document - if ( a === document || a.ownerDocument === preferredDoc && contains(preferredDoc, a) ) { - return -1; - } - if ( b === document || b.ownerDocument === preferredDoc && contains(preferredDoc, b) ) { - return 1; - } - - // Maintain original order - return sortInput ? - ( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) : - 0; - } - - return compare & 4 ? -1 : 1; - } : - function( a, b ) { - // Exit early if the nodes are identical - if ( a === b ) { - hasDuplicate = true; - return 0; - } - - var cur, - i = 0, - aup = a.parentNode, - bup = b.parentNode, - ap = [ a ], - bp = [ b ]; - - // Parentless nodes are either documents or disconnected - if ( !aup || !bup ) { - return a === document ? -1 : - b === document ? 1 : - aup ? -1 : - bup ? 1 : - sortInput ? - ( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) : - 0; - - // If the nodes are siblings, we can do a quick check - } else if ( aup === bup ) { - return siblingCheck( a, b ); - } - - // Otherwise we need full lists of their ancestors for comparison - cur = a; - while ( (cur = cur.parentNode) ) { - ap.unshift( cur ); - } - cur = b; - while ( (cur = cur.parentNode) ) { - bp.unshift( cur ); - } - - // Walk down the tree looking for a discrepancy - while ( ap[i] === bp[i] ) { - i++; - } - - return i ? - // Do a sibling check if the nodes have a common ancestor - siblingCheck( ap[i], bp[i] ) : - - // Otherwise nodes in our document sort first - ap[i] === preferredDoc ? -1 : - bp[i] === preferredDoc ? 1 : - 0; - }; - - return document; -}; - -Sizzle.matches = function( expr, elements ) { - return Sizzle( expr, null, null, elements ); -}; - -Sizzle.matchesSelector = function( elem, expr ) { - // Set document vars if needed - if ( ( elem.ownerDocument || elem ) !== document ) { - setDocument( elem ); - } - - if ( support.matchesSelector && documentIsHTML && - !nonnativeSelectorCache[ expr + " " ] && - ( !rbuggyMatches || !rbuggyMatches.test( expr ) ) && - ( !rbuggyQSA || !rbuggyQSA.test( expr ) ) ) { - - try { - var ret = matches.call( elem, expr ); - - // IE 9's matchesSelector returns false on disconnected nodes - if ( ret || support.disconnectedMatch || - // As well, disconnected nodes are said to be in a document - // fragment in IE 9 - elem.document && elem.document.nodeType !== 11 ) { - return ret; - } - } catch (e) { - nonnativeSelectorCache( expr, true ); - } - } - - return Sizzle( expr, document, null, [ elem ] ).length > 0; -}; - -Sizzle.contains = function( context, elem ) { - // Set document vars if needed - if ( ( context.ownerDocument || context ) !== document ) { - setDocument( context ); - } - return contains( context, elem ); -}; - -Sizzle.attr = function( elem, name ) { - // Set document vars if needed - if ( ( elem.ownerDocument || elem ) !== document ) { - setDocument( elem ); - } - - var fn = Expr.attrHandle[ name.toLowerCase() ], - // Don't get fooled by Object.prototype properties (jQuery #13807) - val = fn && hasOwn.call( Expr.attrHandle, name.toLowerCase() ) ? - fn( elem, name, !documentIsHTML ) : - undefined; - - return val !== undefined ? - val : - support.attributes || !documentIsHTML ? - elem.getAttribute( name ) : - (val = elem.getAttributeNode(name)) && val.specified ? - val.value : - null; -}; - -Sizzle.escape = function( sel ) { - return (sel + "").replace( rcssescape, fcssescape ); -}; - -Sizzle.error = function( msg ) { - throw new Error( "Syntax error, unrecognized expression: " + msg ); -}; - -/** - * Document sorting and removing duplicates - * @param {ArrayLike} results - */ -Sizzle.uniqueSort = function( results ) { - var elem, - duplicates = [], - j = 0, - i = 0; - - // Unless we *know* we can detect duplicates, assume their presence - hasDuplicate = !support.detectDuplicates; - sortInput = !support.sortStable && results.slice( 0 ); - results.sort( sortOrder ); - - if ( hasDuplicate ) { - while ( (elem = results[i++]) ) { - if ( elem === results[ i ] ) { - j = duplicates.push( i ); - } - } - while ( j-- ) { - results.splice( duplicates[ j ], 1 ); - } - } - - // Clear input after sorting to release objects - // See https://github.com/jquery/sizzle/pull/225 - sortInput = null; - - return results; -}; - -/** - * Utility function for retrieving the text value of an array of DOM nodes - * @param {Array|Element} elem - */ -getText = Sizzle.getText = function( elem ) { - var node, - ret = "", - i = 0, - nodeType = elem.nodeType; - - if ( !nodeType ) { - // If no nodeType, this is expected to be an array - while ( (node = elem[i++]) ) { - // Do not traverse comment nodes - ret += getText( node ); - } - } else if ( nodeType === 1 || nodeType === 9 || nodeType === 11 ) { - // Use textContent for elements - // innerText usage removed for consistency of new lines (jQuery #11153) - if ( typeof elem.textContent === "string" ) { - return elem.textContent; - } else { - // Traverse its children - for ( elem = elem.firstChild; elem; elem = elem.nextSibling ) { - ret += getText( elem ); - } - } - } else if ( nodeType === 3 || nodeType === 4 ) { - return elem.nodeValue; - } - // Do not include comment or processing instruction nodes - - return ret; -}; - -Expr = Sizzle.selectors = { - - // Can be adjusted by the user - cacheLength: 50, - - createPseudo: markFunction, - - match: matchExpr, - - attrHandle: {}, - - find: {}, - - relative: { - ">": { dir: "parentNode", first: true }, - " ": { dir: "parentNode" }, - "+": { dir: "previousSibling", first: true }, - "~": { dir: "previousSibling" } - }, - - preFilter: { - "ATTR": function( match ) { - match[1] = match[1].replace( runescape, funescape ); - - // Move the given value to match[3] whether quoted or unquoted - match[3] = ( match[3] || match[4] || match[5] || "" ).replace( runescape, funescape ); - - if ( match[2] === "~=" ) { - match[3] = " " + match[3] + " "; - } - - return match.slice( 0, 4 ); - }, - - "CHILD": function( match ) { - /* matches from matchExpr["CHILD"] - 1 type (only|nth|...) - 2 what (child|of-type) - 3 argument (even|odd|\d*|\d*n([+-]\d+)?|...) - 4 xn-component of xn+y argument ([+-]?\d*n|) - 5 sign of xn-component - 6 x of xn-component - 7 sign of y-component - 8 y of y-component - */ - match[1] = match[1].toLowerCase(); - - if ( match[1].slice( 0, 3 ) === "nth" ) { - // nth-* requires argument - if ( !match[3] ) { - Sizzle.error( match[0] ); - } - - // numeric x and y parameters for Expr.filter.CHILD - // remember that false/true cast respectively to 0/1 - match[4] = +( match[4] ? match[5] + (match[6] || 1) : 2 * ( match[3] === "even" || match[3] === "odd" ) ); - match[5] = +( ( match[7] + match[8] ) || match[3] === "odd" ); - - // other types prohibit arguments - } else if ( match[3] ) { - Sizzle.error( match[0] ); - } - - return match; - }, - - "PSEUDO": function( match ) { - var excess, - unquoted = !match[6] && match[2]; - - if ( matchExpr["CHILD"].test( match[0] ) ) { - return null; - } - - // Accept quoted arguments as-is - if ( match[3] ) { - match[2] = match[4] || match[5] || ""; - - // Strip excess characters from unquoted arguments - } else if ( unquoted && rpseudo.test( unquoted ) && - // Get excess from tokenize (recursively) - (excess = tokenize( unquoted, true )) && - // advance to the next closing parenthesis - (excess = unquoted.indexOf( ")", unquoted.length - excess ) - unquoted.length) ) { - - // excess is a negative index - match[0] = match[0].slice( 0, excess ); - match[2] = unquoted.slice( 0, excess ); - } - - // Return only captures needed by the pseudo filter method (type and argument) - return match.slice( 0, 3 ); - } - }, - - filter: { - - "TAG": function( nodeNameSelector ) { - var nodeName = nodeNameSelector.replace( runescape, funescape ).toLowerCase(); - return nodeNameSelector === "*" ? - function() { return true; } : - function( elem ) { - return elem.nodeName && elem.nodeName.toLowerCase() === nodeName; - }; - }, - - "CLASS": function( className ) { - var pattern = classCache[ className + " " ]; - - return pattern || - (pattern = new RegExp( "(^|" + whitespace + ")" + className + "(" + whitespace + "|$)" )) && - classCache( className, function( elem ) { - return pattern.test( typeof elem.className === "string" && elem.className || typeof elem.getAttribute !== "undefined" && elem.getAttribute("class") || "" ); - }); - }, - - "ATTR": function( name, operator, check ) { - return function( elem ) { - var result = Sizzle.attr( elem, name ); - - if ( result == null ) { - return operator === "!="; - } - if ( !operator ) { - return true; - } - - result += ""; - - return operator === "=" ? result === check : - operator === "!=" ? result !== check : - operator === "^=" ? check && result.indexOf( check ) === 0 : - operator === "*=" ? check && result.indexOf( check ) > -1 : - operator === "$=" ? check && result.slice( -check.length ) === check : - operator === "~=" ? ( " " + result.replace( rwhitespace, " " ) + " " ).indexOf( check ) > -1 : - operator === "|=" ? result === check || result.slice( 0, check.length + 1 ) === check + "-" : - false; - }; - }, - - "CHILD": function( type, what, argument, first, last ) { - var simple = type.slice( 0, 3 ) !== "nth", - forward = type.slice( -4 ) !== "last", - ofType = what === "of-type"; - - return first === 1 && last === 0 ? - - // Shortcut for :nth-*(n) - function( elem ) { - return !!elem.parentNode; - } : - - function( elem, context, xml ) { - var cache, uniqueCache, outerCache, node, nodeIndex, start, - dir = simple !== forward ? "nextSibling" : "previousSibling", - parent = elem.parentNode, - name = ofType && elem.nodeName.toLowerCase(), - useCache = !xml && !ofType, - diff = false; - - if ( parent ) { - - // :(first|last|only)-(child|of-type) - if ( simple ) { - while ( dir ) { - node = elem; - while ( (node = node[ dir ]) ) { - if ( ofType ? - node.nodeName.toLowerCase() === name : - node.nodeType === 1 ) { - - return false; - } - } - // Reverse direction for :only-* (if we haven't yet done so) - start = dir = type === "only" && !start && "nextSibling"; - } - return true; - } - - start = [ forward ? parent.firstChild : parent.lastChild ]; - - // non-xml :nth-child(...) stores cache data on `parent` - if ( forward && useCache ) { - - // Seek `elem` from a previously-cached index - - // ...in a gzip-friendly way - node = parent; - outerCache = node[ expando ] || (node[ expando ] = {}); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ node.uniqueID ] || - (outerCache[ node.uniqueID ] = {}); - - cache = uniqueCache[ type ] || []; - nodeIndex = cache[ 0 ] === dirruns && cache[ 1 ]; - diff = nodeIndex && cache[ 2 ]; - node = nodeIndex && parent.childNodes[ nodeIndex ]; - - while ( (node = ++nodeIndex && node && node[ dir ] || - - // Fallback to seeking `elem` from the start - (diff = nodeIndex = 0) || start.pop()) ) { - - // When found, cache indexes on `parent` and break - if ( node.nodeType === 1 && ++diff && node === elem ) { - uniqueCache[ type ] = [ dirruns, nodeIndex, diff ]; - break; - } - } - - } else { - // Use previously-cached element index if available - if ( useCache ) { - // ...in a gzip-friendly way - node = elem; - outerCache = node[ expando ] || (node[ expando ] = {}); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ node.uniqueID ] || - (outerCache[ node.uniqueID ] = {}); - - cache = uniqueCache[ type ] || []; - nodeIndex = cache[ 0 ] === dirruns && cache[ 1 ]; - diff = nodeIndex; - } - - // xml :nth-child(...) - // or :nth-last-child(...) or :nth(-last)?-of-type(...) - if ( diff === false ) { - // Use the same loop as above to seek `elem` from the start - while ( (node = ++nodeIndex && node && node[ dir ] || - (diff = nodeIndex = 0) || start.pop()) ) { - - if ( ( ofType ? - node.nodeName.toLowerCase() === name : - node.nodeType === 1 ) && - ++diff ) { - - // Cache the index of each encountered element - if ( useCache ) { - outerCache = node[ expando ] || (node[ expando ] = {}); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ node.uniqueID ] || - (outerCache[ node.uniqueID ] = {}); - - uniqueCache[ type ] = [ dirruns, diff ]; - } - - if ( node === elem ) { - break; - } - } - } - } - } - - // Incorporate the offset, then check against cycle size - diff -= last; - return diff === first || ( diff % first === 0 && diff / first >= 0 ); - } - }; - }, - - "PSEUDO": function( pseudo, argument ) { - // pseudo-class names are case-insensitive - // http://www.w3.org/TR/selectors/#pseudo-classes - // Prioritize by case sensitivity in case custom pseudos are added with uppercase letters - // Remember that setFilters inherits from pseudos - var args, - fn = Expr.pseudos[ pseudo ] || Expr.setFilters[ pseudo.toLowerCase() ] || - Sizzle.error( "unsupported pseudo: " + pseudo ); - - // The user may use createPseudo to indicate that - // arguments are needed to create the filter function - // just as Sizzle does - if ( fn[ expando ] ) { - return fn( argument ); - } - - // But maintain support for old signatures - if ( fn.length > 1 ) { - args = [ pseudo, pseudo, "", argument ]; - return Expr.setFilters.hasOwnProperty( pseudo.toLowerCase() ) ? - markFunction(function( seed, matches ) { - var idx, - matched = fn( seed, argument ), - i = matched.length; - while ( i-- ) { - idx = indexOf( seed, matched[i] ); - seed[ idx ] = !( matches[ idx ] = matched[i] ); - } - }) : - function( elem ) { - return fn( elem, 0, args ); - }; - } - - return fn; - } - }, - - pseudos: { - // Potentially complex pseudos - "not": markFunction(function( selector ) { - // Trim the selector passed to compile - // to avoid treating leading and trailing - // spaces as combinators - var input = [], - results = [], - matcher = compile( selector.replace( rtrim, "$1" ) ); - - return matcher[ expando ] ? - markFunction(function( seed, matches, context, xml ) { - var elem, - unmatched = matcher( seed, null, xml, [] ), - i = seed.length; - - // Match elements unmatched by `matcher` - while ( i-- ) { - if ( (elem = unmatched[i]) ) { - seed[i] = !(matches[i] = elem); - } - } - }) : - function( elem, context, xml ) { - input[0] = elem; - matcher( input, null, xml, results ); - // Don't keep the element (issue #299) - input[0] = null; - return !results.pop(); - }; - }), - - "has": markFunction(function( selector ) { - return function( elem ) { - return Sizzle( selector, elem ).length > 0; - }; - }), - - "contains": markFunction(function( text ) { - text = text.replace( runescape, funescape ); - return function( elem ) { - return ( elem.textContent || getText( elem ) ).indexOf( text ) > -1; - }; - }), - - // "Whether an element is represented by a :lang() selector - // is based solely on the element's language value - // being equal to the identifier C, - // or beginning with the identifier C immediately followed by "-". - // The matching of C against the element's language value is performed case-insensitively. - // The identifier C does not have to be a valid language name." - // http://www.w3.org/TR/selectors/#lang-pseudo - "lang": markFunction( function( lang ) { - // lang value must be a valid identifier - if ( !ridentifier.test(lang || "") ) { - Sizzle.error( "unsupported lang: " + lang ); - } - lang = lang.replace( runescape, funescape ).toLowerCase(); - return function( elem ) { - var elemLang; - do { - if ( (elemLang = documentIsHTML ? - elem.lang : - elem.getAttribute("xml:lang") || elem.getAttribute("lang")) ) { - - elemLang = elemLang.toLowerCase(); - return elemLang === lang || elemLang.indexOf( lang + "-" ) === 0; - } - } while ( (elem = elem.parentNode) && elem.nodeType === 1 ); - return false; - }; - }), - - // Miscellaneous - "target": function( elem ) { - var hash = window.location && window.location.hash; - return hash && hash.slice( 1 ) === elem.id; - }, - - "root": function( elem ) { - return elem === docElem; - }, - - "focus": function( elem ) { - return elem === document.activeElement && (!document.hasFocus || document.hasFocus()) && !!(elem.type || elem.href || ~elem.tabIndex); - }, - - // Boolean properties - "enabled": createDisabledPseudo( false ), - "disabled": createDisabledPseudo( true ), - - "checked": function( elem ) { - // In CSS3, :checked should return both checked and selected elements - // http://www.w3.org/TR/2011/REC-css3-selectors-20110929/#checked - var nodeName = elem.nodeName.toLowerCase(); - return (nodeName === "input" && !!elem.checked) || (nodeName === "option" && !!elem.selected); - }, - - "selected": function( elem ) { - // Accessing this property makes selected-by-default - // options in Safari work properly - if ( elem.parentNode ) { - elem.parentNode.selectedIndex; - } - - return elem.selected === true; - }, - - // Contents - "empty": function( elem ) { - // http://www.w3.org/TR/selectors/#empty-pseudo - // :empty is negated by element (1) or content nodes (text: 3; cdata: 4; entity ref: 5), - // but not by others (comment: 8; processing instruction: 7; etc.) - // nodeType < 6 works because attributes (2) do not appear as children - for ( elem = elem.firstChild; elem; elem = elem.nextSibling ) { - if ( elem.nodeType < 6 ) { - return false; - } - } - return true; - }, - - "parent": function( elem ) { - return !Expr.pseudos["empty"]( elem ); - }, - - // Element/input types - "header": function( elem ) { - return rheader.test( elem.nodeName ); - }, - - "input": function( elem ) { - return rinputs.test( elem.nodeName ); - }, - - "button": function( elem ) { - var name = elem.nodeName.toLowerCase(); - return name === "input" && elem.type === "button" || name === "button"; - }, - - "text": function( elem ) { - var attr; - return elem.nodeName.toLowerCase() === "input" && - elem.type === "text" && - - // Support: IE<8 - // New HTML5 attribute values (e.g., "search") appear with elem.type === "text" - ( (attr = elem.getAttribute("type")) == null || attr.toLowerCase() === "text" ); - }, - - // Position-in-collection - "first": createPositionalPseudo(function() { - return [ 0 ]; - }), - - "last": createPositionalPseudo(function( matchIndexes, length ) { - return [ length - 1 ]; - }), - - "eq": createPositionalPseudo(function( matchIndexes, length, argument ) { - return [ argument < 0 ? argument + length : argument ]; - }), - - "even": createPositionalPseudo(function( matchIndexes, length ) { - var i = 0; - for ( ; i < length; i += 2 ) { - matchIndexes.push( i ); - } - return matchIndexes; - }), - - "odd": createPositionalPseudo(function( matchIndexes, length ) { - var i = 1; - for ( ; i < length; i += 2 ) { - matchIndexes.push( i ); - } - return matchIndexes; - }), - - "lt": createPositionalPseudo(function( matchIndexes, length, argument ) { - var i = argument < 0 ? - argument + length : - argument > length ? - length : - argument; - for ( ; --i >= 0; ) { - matchIndexes.push( i ); - } - return matchIndexes; - }), - - "gt": createPositionalPseudo(function( matchIndexes, length, argument ) { - var i = argument < 0 ? argument + length : argument; - for ( ; ++i < length; ) { - matchIndexes.push( i ); - } - return matchIndexes; - }) - } -}; - -Expr.pseudos["nth"] = Expr.pseudos["eq"]; - -// Add button/input type pseudos -for ( i in { radio: true, checkbox: true, file: true, password: true, image: true } ) { - Expr.pseudos[ i ] = createInputPseudo( i ); -} -for ( i in { submit: true, reset: true } ) { - Expr.pseudos[ i ] = createButtonPseudo( i ); -} - -// Easy API for creating new setFilters -function setFilters() {} -setFilters.prototype = Expr.filters = Expr.pseudos; -Expr.setFilters = new setFilters(); - -tokenize = Sizzle.tokenize = function( selector, parseOnly ) { - var matched, match, tokens, type, - soFar, groups, preFilters, - cached = tokenCache[ selector + " " ]; - - if ( cached ) { - return parseOnly ? 0 : cached.slice( 0 ); - } - - soFar = selector; - groups = []; - preFilters = Expr.preFilter; - - while ( soFar ) { - - // Comma and first run - if ( !matched || (match = rcomma.exec( soFar )) ) { - if ( match ) { - // Don't consume trailing commas as valid - soFar = soFar.slice( match[0].length ) || soFar; - } - groups.push( (tokens = []) ); - } - - matched = false; - - // Combinators - if ( (match = rcombinators.exec( soFar )) ) { - matched = match.shift(); - tokens.push({ - value: matched, - // Cast descendant combinators to space - type: match[0].replace( rtrim, " " ) - }); - soFar = soFar.slice( matched.length ); - } - - // Filters - for ( type in Expr.filter ) { - if ( (match = matchExpr[ type ].exec( soFar )) && (!preFilters[ type ] || - (match = preFilters[ type ]( match ))) ) { - matched = match.shift(); - tokens.push({ - value: matched, - type: type, - matches: match - }); - soFar = soFar.slice( matched.length ); - } - } - - if ( !matched ) { - break; - } - } - - // Return the length of the invalid excess - // if we're just parsing - // Otherwise, throw an error or return tokens - return parseOnly ? - soFar.length : - soFar ? - Sizzle.error( selector ) : - // Cache the tokens - tokenCache( selector, groups ).slice( 0 ); -}; - -function toSelector( tokens ) { - var i = 0, - len = tokens.length, - selector = ""; - for ( ; i < len; i++ ) { - selector += tokens[i].value; - } - return selector; -} - -function addCombinator( matcher, combinator, base ) { - var dir = combinator.dir, - skip = combinator.next, - key = skip || dir, - checkNonElements = base && key === "parentNode", - doneName = done++; - - return combinator.first ? - // Check against closest ancestor/preceding element - function( elem, context, xml ) { - while ( (elem = elem[ dir ]) ) { - if ( elem.nodeType === 1 || checkNonElements ) { - return matcher( elem, context, xml ); - } - } - return false; - } : - - // Check against all ancestor/preceding elements - function( elem, context, xml ) { - var oldCache, uniqueCache, outerCache, - newCache = [ dirruns, doneName ]; - - // We can't set arbitrary data on XML nodes, so they don't benefit from combinator caching - if ( xml ) { - while ( (elem = elem[ dir ]) ) { - if ( elem.nodeType === 1 || checkNonElements ) { - if ( matcher( elem, context, xml ) ) { - return true; - } - } - } - } else { - while ( (elem = elem[ dir ]) ) { - if ( elem.nodeType === 1 || checkNonElements ) { - outerCache = elem[ expando ] || (elem[ expando ] = {}); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ elem.uniqueID ] || (outerCache[ elem.uniqueID ] = {}); - - if ( skip && skip === elem.nodeName.toLowerCase() ) { - elem = elem[ dir ] || elem; - } else if ( (oldCache = uniqueCache[ key ]) && - oldCache[ 0 ] === dirruns && oldCache[ 1 ] === doneName ) { - - // Assign to newCache so results back-propagate to previous elements - return (newCache[ 2 ] = oldCache[ 2 ]); - } else { - // Reuse newcache so results back-propagate to previous elements - uniqueCache[ key ] = newCache; - - // A match means we're done; a fail means we have to keep checking - if ( (newCache[ 2 ] = matcher( elem, context, xml )) ) { - return true; - } - } - } - } - } - return false; - }; -} - -function elementMatcher( matchers ) { - return matchers.length > 1 ? - function( elem, context, xml ) { - var i = matchers.length; - while ( i-- ) { - if ( !matchers[i]( elem, context, xml ) ) { - return false; - } - } - return true; - } : - matchers[0]; -} - -function multipleContexts( selector, contexts, results ) { - var i = 0, - len = contexts.length; - for ( ; i < len; i++ ) { - Sizzle( selector, contexts[i], results ); - } - return results; -} - -function condense( unmatched, map, filter, context, xml ) { - var elem, - newUnmatched = [], - i = 0, - len = unmatched.length, - mapped = map != null; - - for ( ; i < len; i++ ) { - if ( (elem = unmatched[i]) ) { - if ( !filter || filter( elem, context, xml ) ) { - newUnmatched.push( elem ); - if ( mapped ) { - map.push( i ); - } - } - } - } - - return newUnmatched; -} - -function setMatcher( preFilter, selector, matcher, postFilter, postFinder, postSelector ) { - if ( postFilter && !postFilter[ expando ] ) { - postFilter = setMatcher( postFilter ); - } - if ( postFinder && !postFinder[ expando ] ) { - postFinder = setMatcher( postFinder, postSelector ); - } - return markFunction(function( seed, results, context, xml ) { - var temp, i, elem, - preMap = [], - postMap = [], - preexisting = results.length, - - // Get initial elements from seed or context - elems = seed || multipleContexts( selector || "*", context.nodeType ? [ context ] : context, [] ), - - // Prefilter to get matcher input, preserving a map for seed-results synchronization - matcherIn = preFilter && ( seed || !selector ) ? - condense( elems, preMap, preFilter, context, xml ) : - elems, - - matcherOut = matcher ? - // If we have a postFinder, or filtered seed, or non-seed postFilter or preexisting results, - postFinder || ( seed ? preFilter : preexisting || postFilter ) ? - - // ...intermediate processing is necessary - [] : - - // ...otherwise use results directly - results : - matcherIn; - - // Find primary matches - if ( matcher ) { - matcher( matcherIn, matcherOut, context, xml ); - } - - // Apply postFilter - if ( postFilter ) { - temp = condense( matcherOut, postMap ); - postFilter( temp, [], context, xml ); - - // Un-match failing elements by moving them back to matcherIn - i = temp.length; - while ( i-- ) { - if ( (elem = temp[i]) ) { - matcherOut[ postMap[i] ] = !(matcherIn[ postMap[i] ] = elem); - } - } - } - - if ( seed ) { - if ( postFinder || preFilter ) { - if ( postFinder ) { - // Get the final matcherOut by condensing this intermediate into postFinder contexts - temp = []; - i = matcherOut.length; - while ( i-- ) { - if ( (elem = matcherOut[i]) ) { - // Restore matcherIn since elem is not yet a final match - temp.push( (matcherIn[i] = elem) ); - } - } - postFinder( null, (matcherOut = []), temp, xml ); - } - - // Move matched elements from seed to results to keep them synchronized - i = matcherOut.length; - while ( i-- ) { - if ( (elem = matcherOut[i]) && - (temp = postFinder ? indexOf( seed, elem ) : preMap[i]) > -1 ) { - - seed[temp] = !(results[temp] = elem); - } - } - } - - // Add elements to results, through postFinder if defined - } else { - matcherOut = condense( - matcherOut === results ? - matcherOut.splice( preexisting, matcherOut.length ) : - matcherOut - ); - if ( postFinder ) { - postFinder( null, results, matcherOut, xml ); - } else { - push.apply( results, matcherOut ); - } - } - }); -} - -function matcherFromTokens( tokens ) { - var checkContext, matcher, j, - len = tokens.length, - leadingRelative = Expr.relative[ tokens[0].type ], - implicitRelative = leadingRelative || Expr.relative[" "], - i = leadingRelative ? 1 : 0, - - // The foundational matcher ensures that elements are reachable from top-level context(s) - matchContext = addCombinator( function( elem ) { - return elem === checkContext; - }, implicitRelative, true ), - matchAnyContext = addCombinator( function( elem ) { - return indexOf( checkContext, elem ) > -1; - }, implicitRelative, true ), - matchers = [ function( elem, context, xml ) { - var ret = ( !leadingRelative && ( xml || context !== outermostContext ) ) || ( - (checkContext = context).nodeType ? - matchContext( elem, context, xml ) : - matchAnyContext( elem, context, xml ) ); - // Avoid hanging onto element (issue #299) - checkContext = null; - return ret; - } ]; - - for ( ; i < len; i++ ) { - if ( (matcher = Expr.relative[ tokens[i].type ]) ) { - matchers = [ addCombinator(elementMatcher( matchers ), matcher) ]; - } else { - matcher = Expr.filter[ tokens[i].type ].apply( null, tokens[i].matches ); - - // Return special upon seeing a positional matcher - if ( matcher[ expando ] ) { - // Find the next relative operator (if any) for proper handling - j = ++i; - for ( ; j < len; j++ ) { - if ( Expr.relative[ tokens[j].type ] ) { - break; - } - } - return setMatcher( - i > 1 && elementMatcher( matchers ), - i > 1 && toSelector( - // If the preceding token was a descendant combinator, insert an implicit any-element `*` - tokens.slice( 0, i - 1 ).concat({ value: tokens[ i - 2 ].type === " " ? "*" : "" }) - ).replace( rtrim, "$1" ), - matcher, - i < j && matcherFromTokens( tokens.slice( i, j ) ), - j < len && matcherFromTokens( (tokens = tokens.slice( j )) ), - j < len && toSelector( tokens ) - ); - } - matchers.push( matcher ); - } - } - - return elementMatcher( matchers ); -} - -function matcherFromGroupMatchers( elementMatchers, setMatchers ) { - var bySet = setMatchers.length > 0, - byElement = elementMatchers.length > 0, - superMatcher = function( seed, context, xml, results, outermost ) { - var elem, j, matcher, - matchedCount = 0, - i = "0", - unmatched = seed && [], - setMatched = [], - contextBackup = outermostContext, - // We must always have either seed elements or outermost context - elems = seed || byElement && Expr.find["TAG"]( "*", outermost ), - // Use integer dirruns iff this is the outermost matcher - dirrunsUnique = (dirruns += contextBackup == null ? 1 : Math.random() || 0.1), - len = elems.length; - - if ( outermost ) { - outermostContext = context === document || context || outermost; - } - - // Add elements passing elementMatchers directly to results - // Support: IE<9, Safari - // Tolerate NodeList properties (IE: "length"; Safari: ) matching elements by id - for ( ; i !== len && (elem = elems[i]) != null; i++ ) { - if ( byElement && elem ) { - j = 0; - if ( !context && elem.ownerDocument !== document ) { - setDocument( elem ); - xml = !documentIsHTML; - } - while ( (matcher = elementMatchers[j++]) ) { - if ( matcher( elem, context || document, xml) ) { - results.push( elem ); - break; - } - } - if ( outermost ) { - dirruns = dirrunsUnique; - } - } - - // Track unmatched elements for set filters - if ( bySet ) { - // They will have gone through all possible matchers - if ( (elem = !matcher && elem) ) { - matchedCount--; - } - - // Lengthen the array for every element, matched or not - if ( seed ) { - unmatched.push( elem ); - } - } - } - - // `i` is now the count of elements visited above, and adding it to `matchedCount` - // makes the latter nonnegative. - matchedCount += i; - - // Apply set filters to unmatched elements - // NOTE: This can be skipped if there are no unmatched elements (i.e., `matchedCount` - // equals `i`), unless we didn't visit _any_ elements in the above loop because we have - // no element matchers and no seed. - // Incrementing an initially-string "0" `i` allows `i` to remain a string only in that - // case, which will result in a "00" `matchedCount` that differs from `i` but is also - // numerically zero. - if ( bySet && i !== matchedCount ) { - j = 0; - while ( (matcher = setMatchers[j++]) ) { - matcher( unmatched, setMatched, context, xml ); - } - - if ( seed ) { - // Reintegrate element matches to eliminate the need for sorting - if ( matchedCount > 0 ) { - while ( i-- ) { - if ( !(unmatched[i] || setMatched[i]) ) { - setMatched[i] = pop.call( results ); - } - } - } - - // Discard index placeholder values to get only actual matches - setMatched = condense( setMatched ); - } - - // Add matches to results - push.apply( results, setMatched ); - - // Seedless set matches succeeding multiple successful matchers stipulate sorting - if ( outermost && !seed && setMatched.length > 0 && - ( matchedCount + setMatchers.length ) > 1 ) { - - Sizzle.uniqueSort( results ); - } - } - - // Override manipulation of globals by nested matchers - if ( outermost ) { - dirruns = dirrunsUnique; - outermostContext = contextBackup; - } - - return unmatched; - }; - - return bySet ? - markFunction( superMatcher ) : - superMatcher; -} - -compile = Sizzle.compile = function( selector, match /* Internal Use Only */ ) { - var i, - setMatchers = [], - elementMatchers = [], - cached = compilerCache[ selector + " " ]; - - if ( !cached ) { - // Generate a function of recursive functions that can be used to check each element - if ( !match ) { - match = tokenize( selector ); - } - i = match.length; - while ( i-- ) { - cached = matcherFromTokens( match[i] ); - if ( cached[ expando ] ) { - setMatchers.push( cached ); - } else { - elementMatchers.push( cached ); - } - } - - // Cache the compiled function - cached = compilerCache( selector, matcherFromGroupMatchers( elementMatchers, setMatchers ) ); - - // Save selector and tokenization - cached.selector = selector; - } - return cached; -}; - -/** - * A low-level selection function that works with Sizzle's compiled - * selector functions - * @param {String|Function} selector A selector or a pre-compiled - * selector function built with Sizzle.compile - * @param {Element} context - * @param {Array} [results] - * @param {Array} [seed] A set of elements to match against - */ -select = Sizzle.select = function( selector, context, results, seed ) { - var i, tokens, token, type, find, - compiled = typeof selector === "function" && selector, - match = !seed && tokenize( (selector = compiled.selector || selector) ); - - results = results || []; - - // Try to minimize operations if there is only one selector in the list and no seed - // (the latter of which guarantees us context) - if ( match.length === 1 ) { - - // Reduce context if the leading compound selector is an ID - tokens = match[0] = match[0].slice( 0 ); - if ( tokens.length > 2 && (token = tokens[0]).type === "ID" && - context.nodeType === 9 && documentIsHTML && Expr.relative[ tokens[1].type ] ) { - - context = ( Expr.find["ID"]( token.matches[0].replace(runescape, funescape), context ) || [] )[0]; - if ( !context ) { - return results; - - // Precompiled matchers will still verify ancestry, so step up a level - } else if ( compiled ) { - context = context.parentNode; - } - - selector = selector.slice( tokens.shift().value.length ); - } - - // Fetch a seed set for right-to-left matching - i = matchExpr["needsContext"].test( selector ) ? 0 : tokens.length; - while ( i-- ) { - token = tokens[i]; - - // Abort if we hit a combinator - if ( Expr.relative[ (type = token.type) ] ) { - break; - } - if ( (find = Expr.find[ type ]) ) { - // Search, expanding context for leading sibling combinators - if ( (seed = find( - token.matches[0].replace( runescape, funescape ), - rsibling.test( tokens[0].type ) && testContext( context.parentNode ) || context - )) ) { - - // If seed is empty or no tokens remain, we can return early - tokens.splice( i, 1 ); - selector = seed.length && toSelector( tokens ); - if ( !selector ) { - push.apply( results, seed ); - return results; - } - - break; - } - } - } - } - - // Compile and execute a filtering function if one is not provided - // Provide `match` to avoid retokenization if we modified the selector above - ( compiled || compile( selector, match ) )( - seed, - context, - !documentIsHTML, - results, - !context || rsibling.test( selector ) && testContext( context.parentNode ) || context - ); - return results; -}; - -// One-time assignments - -// Sort stability -support.sortStable = expando.split("").sort( sortOrder ).join("") === expando; - -// Support: Chrome 14-35+ -// Always assume duplicates if they aren't passed to the comparison function -support.detectDuplicates = !!hasDuplicate; - -// Initialize against the default document -setDocument(); - -// Support: Webkit<537.32 - Safari 6.0.3/Chrome 25 (fixed in Chrome 27) -// Detached nodes confoundingly follow *each other* -support.sortDetached = assert(function( el ) { - // Should return 1, but returns 4 (following) - return el.compareDocumentPosition( document.createElement("fieldset") ) & 1; -}); - -// Support: IE<8 -// Prevent attribute/property "interpolation" -// https://msdn.microsoft.com/en-us/library/ms536429%28VS.85%29.aspx -if ( !assert(function( el ) { - el.innerHTML = ""; - return el.firstChild.getAttribute("href") === "#" ; -}) ) { - addHandle( "type|href|height|width", function( elem, name, isXML ) { - if ( !isXML ) { - return elem.getAttribute( name, name.toLowerCase() === "type" ? 1 : 2 ); - } - }); -} - -// Support: IE<9 -// Use defaultValue in place of getAttribute("value") -if ( !support.attributes || !assert(function( el ) { - el.innerHTML = ""; - el.firstChild.setAttribute( "value", "" ); - return el.firstChild.getAttribute( "value" ) === ""; -}) ) { - addHandle( "value", function( elem, name, isXML ) { - if ( !isXML && elem.nodeName.toLowerCase() === "input" ) { - return elem.defaultValue; - } - }); -} - -// Support: IE<9 -// Use getAttributeNode to fetch booleans when getAttribute lies -if ( !assert(function( el ) { - return el.getAttribute("disabled") == null; -}) ) { - addHandle( booleans, function( elem, name, isXML ) { - var val; - if ( !isXML ) { - return elem[ name ] === true ? name.toLowerCase() : - (val = elem.getAttributeNode( name )) && val.specified ? - val.value : - null; - } - }); -} - -return Sizzle; - -})( window ); - - - -jQuery.find = Sizzle; -jQuery.expr = Sizzle.selectors; - -// Deprecated -jQuery.expr[ ":" ] = jQuery.expr.pseudos; -jQuery.uniqueSort = jQuery.unique = Sizzle.uniqueSort; -jQuery.text = Sizzle.getText; -jQuery.isXMLDoc = Sizzle.isXML; -jQuery.contains = Sizzle.contains; -jQuery.escapeSelector = Sizzle.escape; - - - - -var dir = function( elem, dir, until ) { - var matched = [], - truncate = until !== undefined; - - while ( ( elem = elem[ dir ] ) && elem.nodeType !== 9 ) { - if ( elem.nodeType === 1 ) { - if ( truncate && jQuery( elem ).is( until ) ) { - break; - } - matched.push( elem ); - } - } - return matched; -}; - - -var siblings = function( n, elem ) { - var matched = []; - - for ( ; n; n = n.nextSibling ) { - if ( n.nodeType === 1 && n !== elem ) { - matched.push( n ); - } - } - - return matched; -}; - - -var rneedsContext = jQuery.expr.match.needsContext; - - - -function nodeName( elem, name ) { - - return elem.nodeName && elem.nodeName.toLowerCase() === name.toLowerCase(); - -}; -var rsingleTag = ( /^<([a-z][^\/\0>:\x20\t\r\n\f]*)[\x20\t\r\n\f]*\/?>(?:<\/\1>|)$/i ); - - - -// Implement the identical functionality for filter and not -function winnow( elements, qualifier, not ) { - if ( isFunction( qualifier ) ) { - return jQuery.grep( elements, function( elem, i ) { - return !!qualifier.call( elem, i, elem ) !== not; - } ); - } - - // Single element - if ( qualifier.nodeType ) { - return jQuery.grep( elements, function( elem ) { - return ( elem === qualifier ) !== not; - } ); - } - - // Arraylike of elements (jQuery, arguments, Array) - if ( typeof qualifier !== "string" ) { - return jQuery.grep( elements, function( elem ) { - return ( indexOf.call( qualifier, elem ) > -1 ) !== not; - } ); - } - - // Filtered directly for both simple and complex selectors - return jQuery.filter( qualifier, elements, not ); -} - -jQuery.filter = function( expr, elems, not ) { - var elem = elems[ 0 ]; - - if ( not ) { - expr = ":not(" + expr + ")"; - } - - if ( elems.length === 1 && elem.nodeType === 1 ) { - return jQuery.find.matchesSelector( elem, expr ) ? [ elem ] : []; - } - - return jQuery.find.matches( expr, jQuery.grep( elems, function( elem ) { - return elem.nodeType === 1; - } ) ); -}; - -jQuery.fn.extend( { - find: function( selector ) { - var i, ret, - len = this.length, - self = this; - - if ( typeof selector !== "string" ) { - return this.pushStack( jQuery( selector ).filter( function() { - for ( i = 0; i < len; i++ ) { - if ( jQuery.contains( self[ i ], this ) ) { - return true; - } - } - } ) ); - } - - ret = this.pushStack( [] ); - - for ( i = 0; i < len; i++ ) { - jQuery.find( selector, self[ i ], ret ); - } - - return len > 1 ? jQuery.uniqueSort( ret ) : ret; - }, - filter: function( selector ) { - return this.pushStack( winnow( this, selector || [], false ) ); - }, - not: function( selector ) { - return this.pushStack( winnow( this, selector || [], true ) ); - }, - is: function( selector ) { - return !!winnow( - this, - - // If this is a positional/relative selector, check membership in the returned set - // so $("p:first").is("p:last") won't return true for a doc with two "p". - typeof selector === "string" && rneedsContext.test( selector ) ? - jQuery( selector ) : - selector || [], - false - ).length; - } -} ); - - -// Initialize a jQuery object - - -// A central reference to the root jQuery(document) -var rootjQuery, - - // A simple way to check for HTML strings - // Prioritize #id over to avoid XSS via location.hash (#9521) - // Strict HTML recognition (#11290: must start with <) - // Shortcut simple #id case for speed - rquickExpr = /^(?:\s*(<[\w\W]+>)[^>]*|#([\w-]+))$/, - - init = jQuery.fn.init = function( selector, context, root ) { - var match, elem; - - // HANDLE: $(""), $(null), $(undefined), $(false) - if ( !selector ) { - return this; - } - - // Method init() accepts an alternate rootjQuery - // so migrate can support jQuery.sub (gh-2101) - root = root || rootjQuery; - - // Handle HTML strings - if ( typeof selector === "string" ) { - if ( selector[ 0 ] === "<" && - selector[ selector.length - 1 ] === ">" && - selector.length >= 3 ) { - - // Assume that strings that start and end with <> are HTML and skip the regex check - match = [ null, selector, null ]; - - } else { - match = rquickExpr.exec( selector ); - } - - // Match html or make sure no context is specified for #id - if ( match && ( match[ 1 ] || !context ) ) { - - // HANDLE: $(html) -> $(array) - if ( match[ 1 ] ) { - context = context instanceof jQuery ? context[ 0 ] : context; - - // Option to run scripts is true for back-compat - // Intentionally let the error be thrown if parseHTML is not present - jQuery.merge( this, jQuery.parseHTML( - match[ 1 ], - context && context.nodeType ? context.ownerDocument || context : document, - true - ) ); - - // HANDLE: $(html, props) - if ( rsingleTag.test( match[ 1 ] ) && jQuery.isPlainObject( context ) ) { - for ( match in context ) { - - // Properties of context are called as methods if possible - if ( isFunction( this[ match ] ) ) { - this[ match ]( context[ match ] ); - - // ...and otherwise set as attributes - } else { - this.attr( match, context[ match ] ); - } - } - } - - return this; - - // HANDLE: $(#id) - } else { - elem = document.getElementById( match[ 2 ] ); - - if ( elem ) { - - // Inject the element directly into the jQuery object - this[ 0 ] = elem; - this.length = 1; - } - return this; - } - - // HANDLE: $(expr, $(...)) - } else if ( !context || context.jquery ) { - return ( context || root ).find( selector ); - - // HANDLE: $(expr, context) - // (which is just equivalent to: $(context).find(expr) - } else { - return this.constructor( context ).find( selector ); - } - - // HANDLE: $(DOMElement) - } else if ( selector.nodeType ) { - this[ 0 ] = selector; - this.length = 1; - return this; - - // HANDLE: $(function) - // Shortcut for document ready - } else if ( isFunction( selector ) ) { - return root.ready !== undefined ? - root.ready( selector ) : - - // Execute immediately if ready is not present - selector( jQuery ); - } - - return jQuery.makeArray( selector, this ); - }; - -// Give the init function the jQuery prototype for later instantiation -init.prototype = jQuery.fn; - -// Initialize central reference -rootjQuery = jQuery( document ); - - -var rparentsprev = /^(?:parents|prev(?:Until|All))/, - - // Methods guaranteed to produce a unique set when starting from a unique set - guaranteedUnique = { - children: true, - contents: true, - next: true, - prev: true - }; - -jQuery.fn.extend( { - has: function( target ) { - var targets = jQuery( target, this ), - l = targets.length; - - return this.filter( function() { - var i = 0; - for ( ; i < l; i++ ) { - if ( jQuery.contains( this, targets[ i ] ) ) { - return true; - } - } - } ); - }, - - closest: function( selectors, context ) { - var cur, - i = 0, - l = this.length, - matched = [], - targets = typeof selectors !== "string" && jQuery( selectors ); - - // Positional selectors never match, since there's no _selection_ context - if ( !rneedsContext.test( selectors ) ) { - for ( ; i < l; i++ ) { - for ( cur = this[ i ]; cur && cur !== context; cur = cur.parentNode ) { - - // Always skip document fragments - if ( cur.nodeType < 11 && ( targets ? - targets.index( cur ) > -1 : - - // Don't pass non-elements to Sizzle - cur.nodeType === 1 && - jQuery.find.matchesSelector( cur, selectors ) ) ) { - - matched.push( cur ); - break; - } - } - } - } - - return this.pushStack( matched.length > 1 ? jQuery.uniqueSort( matched ) : matched ); - }, - - // Determine the position of an element within the set - index: function( elem ) { - - // No argument, return index in parent - if ( !elem ) { - return ( this[ 0 ] && this[ 0 ].parentNode ) ? this.first().prevAll().length : -1; - } - - // Index in selector - if ( typeof elem === "string" ) { - return indexOf.call( jQuery( elem ), this[ 0 ] ); - } - - // Locate the position of the desired element - return indexOf.call( this, - - // If it receives a jQuery object, the first element is used - elem.jquery ? elem[ 0 ] : elem - ); - }, - - add: function( selector, context ) { - return this.pushStack( - jQuery.uniqueSort( - jQuery.merge( this.get(), jQuery( selector, context ) ) - ) - ); - }, - - addBack: function( selector ) { - return this.add( selector == null ? - this.prevObject : this.prevObject.filter( selector ) - ); - } -} ); - -function sibling( cur, dir ) { - while ( ( cur = cur[ dir ] ) && cur.nodeType !== 1 ) {} - return cur; -} - -jQuery.each( { - parent: function( elem ) { - var parent = elem.parentNode; - return parent && parent.nodeType !== 11 ? parent : null; - }, - parents: function( elem ) { - return dir( elem, "parentNode" ); - }, - parentsUntil: function( elem, i, until ) { - return dir( elem, "parentNode", until ); - }, - next: function( elem ) { - return sibling( elem, "nextSibling" ); - }, - prev: function( elem ) { - return sibling( elem, "previousSibling" ); - }, - nextAll: function( elem ) { - return dir( elem, "nextSibling" ); - }, - prevAll: function( elem ) { - return dir( elem, "previousSibling" ); - }, - nextUntil: function( elem, i, until ) { - return dir( elem, "nextSibling", until ); - }, - prevUntil: function( elem, i, until ) { - return dir( elem, "previousSibling", until ); - }, - siblings: function( elem ) { - return siblings( ( elem.parentNode || {} ).firstChild, elem ); - }, - children: function( elem ) { - return siblings( elem.firstChild ); - }, - contents: function( elem ) { - if ( typeof elem.contentDocument !== "undefined" ) { - return elem.contentDocument; - } - - // Support: IE 9 - 11 only, iOS 7 only, Android Browser <=4.3 only - // Treat the template element as a regular one in browsers that - // don't support it. - if ( nodeName( elem, "template" ) ) { - elem = elem.content || elem; - } - - return jQuery.merge( [], elem.childNodes ); - } -}, function( name, fn ) { - jQuery.fn[ name ] = function( until, selector ) { - var matched = jQuery.map( this, fn, until ); - - if ( name.slice( -5 ) !== "Until" ) { - selector = until; - } - - if ( selector && typeof selector === "string" ) { - matched = jQuery.filter( selector, matched ); - } - - if ( this.length > 1 ) { - - // Remove duplicates - if ( !guaranteedUnique[ name ] ) { - jQuery.uniqueSort( matched ); - } - - // Reverse order for parents* and prev-derivatives - if ( rparentsprev.test( name ) ) { - matched.reverse(); - } - } - - return this.pushStack( matched ); - }; -} ); -var rnothtmlwhite = ( /[^\x20\t\r\n\f]+/g ); - - - -// Convert String-formatted options into Object-formatted ones -function createOptions( options ) { - var object = {}; - jQuery.each( options.match( rnothtmlwhite ) || [], function( _, flag ) { - object[ flag ] = true; - } ); - return object; -} - -/* - * Create a callback list using the following parameters: - * - * options: an optional list of space-separated options that will change how - * the callback list behaves or a more traditional option object - * - * By default a callback list will act like an event callback list and can be - * "fired" multiple times. - * - * Possible options: - * - * once: will ensure the callback list can only be fired once (like a Deferred) - * - * memory: will keep track of previous values and will call any callback added - * after the list has been fired right away with the latest "memorized" - * values (like a Deferred) - * - * unique: will ensure a callback can only be added once (no duplicate in the list) - * - * stopOnFalse: interrupt callings when a callback returns false - * - */ -jQuery.Callbacks = function( options ) { - - // Convert options from String-formatted to Object-formatted if needed - // (we check in cache first) - options = typeof options === "string" ? - createOptions( options ) : - jQuery.extend( {}, options ); - - var // Flag to know if list is currently firing - firing, - - // Last fire value for non-forgettable lists - memory, - - // Flag to know if list was already fired - fired, - - // Flag to prevent firing - locked, - - // Actual callback list - list = [], - - // Queue of execution data for repeatable lists - queue = [], - - // Index of currently firing callback (modified by add/remove as needed) - firingIndex = -1, - - // Fire callbacks - fire = function() { - - // Enforce single-firing - locked = locked || options.once; - - // Execute callbacks for all pending executions, - // respecting firingIndex overrides and runtime changes - fired = firing = true; - for ( ; queue.length; firingIndex = -1 ) { - memory = queue.shift(); - while ( ++firingIndex < list.length ) { - - // Run callback and check for early termination - if ( list[ firingIndex ].apply( memory[ 0 ], memory[ 1 ] ) === false && - options.stopOnFalse ) { - - // Jump to end and forget the data so .add doesn't re-fire - firingIndex = list.length; - memory = false; - } - } - } - - // Forget the data if we're done with it - if ( !options.memory ) { - memory = false; - } - - firing = false; - - // Clean up if we're done firing for good - if ( locked ) { - - // Keep an empty list if we have data for future add calls - if ( memory ) { - list = []; - - // Otherwise, this object is spent - } else { - list = ""; - } - } - }, - - // Actual Callbacks object - self = { - - // Add a callback or a collection of callbacks to the list - add: function() { - if ( list ) { - - // If we have memory from a past run, we should fire after adding - if ( memory && !firing ) { - firingIndex = list.length - 1; - queue.push( memory ); - } - - ( function add( args ) { - jQuery.each( args, function( _, arg ) { - if ( isFunction( arg ) ) { - if ( !options.unique || !self.has( arg ) ) { - list.push( arg ); - } - } else if ( arg && arg.length && toType( arg ) !== "string" ) { - - // Inspect recursively - add( arg ); - } - } ); - } )( arguments ); - - if ( memory && !firing ) { - fire(); - } - } - return this; - }, - - // Remove a callback from the list - remove: function() { - jQuery.each( arguments, function( _, arg ) { - var index; - while ( ( index = jQuery.inArray( arg, list, index ) ) > -1 ) { - list.splice( index, 1 ); - - // Handle firing indexes - if ( index <= firingIndex ) { - firingIndex--; - } - } - } ); - return this; - }, - - // Check if a given callback is in the list. - // If no argument is given, return whether or not list has callbacks attached. - has: function( fn ) { - return fn ? - jQuery.inArray( fn, list ) > -1 : - list.length > 0; - }, - - // Remove all callbacks from the list - empty: function() { - if ( list ) { - list = []; - } - return this; - }, - - // Disable .fire and .add - // Abort any current/pending executions - // Clear all callbacks and values - disable: function() { - locked = queue = []; - list = memory = ""; - return this; - }, - disabled: function() { - return !list; - }, - - // Disable .fire - // Also disable .add unless we have memory (since it would have no effect) - // Abort any pending executions - lock: function() { - locked = queue = []; - if ( !memory && !firing ) { - list = memory = ""; - } - return this; - }, - locked: function() { - return !!locked; - }, - - // Call all callbacks with the given context and arguments - fireWith: function( context, args ) { - if ( !locked ) { - args = args || []; - args = [ context, args.slice ? args.slice() : args ]; - queue.push( args ); - if ( !firing ) { - fire(); - } - } - return this; - }, - - // Call all the callbacks with the given arguments - fire: function() { - self.fireWith( this, arguments ); - return this; - }, - - // To know if the callbacks have already been called at least once - fired: function() { - return !!fired; - } - }; - - return self; -}; - - -function Identity( v ) { - return v; -} -function Thrower( ex ) { - throw ex; -} - -function adoptValue( value, resolve, reject, noValue ) { - var method; - - try { - - // Check for promise aspect first to privilege synchronous behavior - if ( value && isFunction( ( method = value.promise ) ) ) { - method.call( value ).done( resolve ).fail( reject ); - - // Other thenables - } else if ( value && isFunction( ( method = value.then ) ) ) { - method.call( value, resolve, reject ); - - // Other non-thenables - } else { - - // Control `resolve` arguments by letting Array#slice cast boolean `noValue` to integer: - // * false: [ value ].slice( 0 ) => resolve( value ) - // * true: [ value ].slice( 1 ) => resolve() - resolve.apply( undefined, [ value ].slice( noValue ) ); - } - - // For Promises/A+, convert exceptions into rejections - // Since jQuery.when doesn't unwrap thenables, we can skip the extra checks appearing in - // Deferred#then to conditionally suppress rejection. - } catch ( value ) { - - // Support: Android 4.0 only - // Strict mode functions invoked without .call/.apply get global-object context - reject.apply( undefined, [ value ] ); - } -} - -jQuery.extend( { - - Deferred: function( func ) { - var tuples = [ - - // action, add listener, callbacks, - // ... .then handlers, argument index, [final state] - [ "notify", "progress", jQuery.Callbacks( "memory" ), - jQuery.Callbacks( "memory" ), 2 ], - [ "resolve", "done", jQuery.Callbacks( "once memory" ), - jQuery.Callbacks( "once memory" ), 0, "resolved" ], - [ "reject", "fail", jQuery.Callbacks( "once memory" ), - jQuery.Callbacks( "once memory" ), 1, "rejected" ] - ], - state = "pending", - promise = { - state: function() { - return state; - }, - always: function() { - deferred.done( arguments ).fail( arguments ); - return this; - }, - "catch": function( fn ) { - return promise.then( null, fn ); - }, - - // Keep pipe for back-compat - pipe: function( /* fnDone, fnFail, fnProgress */ ) { - var fns = arguments; - - return jQuery.Deferred( function( newDefer ) { - jQuery.each( tuples, function( i, tuple ) { - - // Map tuples (progress, done, fail) to arguments (done, fail, progress) - var fn = isFunction( fns[ tuple[ 4 ] ] ) && fns[ tuple[ 4 ] ]; - - // deferred.progress(function() { bind to newDefer or newDefer.notify }) - // deferred.done(function() { bind to newDefer or newDefer.resolve }) - // deferred.fail(function() { bind to newDefer or newDefer.reject }) - deferred[ tuple[ 1 ] ]( function() { - var returned = fn && fn.apply( this, arguments ); - if ( returned && isFunction( returned.promise ) ) { - returned.promise() - .progress( newDefer.notify ) - .done( newDefer.resolve ) - .fail( newDefer.reject ); - } else { - newDefer[ tuple[ 0 ] + "With" ]( - this, - fn ? [ returned ] : arguments - ); - } - } ); - } ); - fns = null; - } ).promise(); - }, - then: function( onFulfilled, onRejected, onProgress ) { - var maxDepth = 0; - function resolve( depth, deferred, handler, special ) { - return function() { - var that = this, - args = arguments, - mightThrow = function() { - var returned, then; - - // Support: Promises/A+ section 2.3.3.3.3 - // https://promisesaplus.com/#point-59 - // Ignore double-resolution attempts - if ( depth < maxDepth ) { - return; - } - - returned = handler.apply( that, args ); - - // Support: Promises/A+ section 2.3.1 - // https://promisesaplus.com/#point-48 - if ( returned === deferred.promise() ) { - throw new TypeError( "Thenable self-resolution" ); - } - - // Support: Promises/A+ sections 2.3.3.1, 3.5 - // https://promisesaplus.com/#point-54 - // https://promisesaplus.com/#point-75 - // Retrieve `then` only once - then = returned && - - // Support: Promises/A+ section 2.3.4 - // https://promisesaplus.com/#point-64 - // Only check objects and functions for thenability - ( typeof returned === "object" || - typeof returned === "function" ) && - returned.then; - - // Handle a returned thenable - if ( isFunction( then ) ) { - - // Special processors (notify) just wait for resolution - if ( special ) { - then.call( - returned, - resolve( maxDepth, deferred, Identity, special ), - resolve( maxDepth, deferred, Thrower, special ) - ); - - // Normal processors (resolve) also hook into progress - } else { - - // ...and disregard older resolution values - maxDepth++; - - then.call( - returned, - resolve( maxDepth, deferred, Identity, special ), - resolve( maxDepth, deferred, Thrower, special ), - resolve( maxDepth, deferred, Identity, - deferred.notifyWith ) - ); - } - - // Handle all other returned values - } else { - - // Only substitute handlers pass on context - // and multiple values (non-spec behavior) - if ( handler !== Identity ) { - that = undefined; - args = [ returned ]; - } - - // Process the value(s) - // Default process is resolve - ( special || deferred.resolveWith )( that, args ); - } - }, - - // Only normal processors (resolve) catch and reject exceptions - process = special ? - mightThrow : - function() { - try { - mightThrow(); - } catch ( e ) { - - if ( jQuery.Deferred.exceptionHook ) { - jQuery.Deferred.exceptionHook( e, - process.stackTrace ); - } - - // Support: Promises/A+ section 2.3.3.3.4.1 - // https://promisesaplus.com/#point-61 - // Ignore post-resolution exceptions - if ( depth + 1 >= maxDepth ) { - - // Only substitute handlers pass on context - // and multiple values (non-spec behavior) - if ( handler !== Thrower ) { - that = undefined; - args = [ e ]; - } - - deferred.rejectWith( that, args ); - } - } - }; - - // Support: Promises/A+ section 2.3.3.3.1 - // https://promisesaplus.com/#point-57 - // Re-resolve promises immediately to dodge false rejection from - // subsequent errors - if ( depth ) { - process(); - } else { - - // Call an optional hook to record the stack, in case of exception - // since it's otherwise lost when execution goes async - if ( jQuery.Deferred.getStackHook ) { - process.stackTrace = jQuery.Deferred.getStackHook(); - } - window.setTimeout( process ); - } - }; - } - - return jQuery.Deferred( function( newDefer ) { - - // progress_handlers.add( ... ) - tuples[ 0 ][ 3 ].add( - resolve( - 0, - newDefer, - isFunction( onProgress ) ? - onProgress : - Identity, - newDefer.notifyWith - ) - ); - - // fulfilled_handlers.add( ... ) - tuples[ 1 ][ 3 ].add( - resolve( - 0, - newDefer, - isFunction( onFulfilled ) ? - onFulfilled : - Identity - ) - ); - - // rejected_handlers.add( ... ) - tuples[ 2 ][ 3 ].add( - resolve( - 0, - newDefer, - isFunction( onRejected ) ? - onRejected : - Thrower - ) - ); - } ).promise(); - }, - - // Get a promise for this deferred - // If obj is provided, the promise aspect is added to the object - promise: function( obj ) { - return obj != null ? jQuery.extend( obj, promise ) : promise; - } - }, - deferred = {}; - - // Add list-specific methods - jQuery.each( tuples, function( i, tuple ) { - var list = tuple[ 2 ], - stateString = tuple[ 5 ]; - - // promise.progress = list.add - // promise.done = list.add - // promise.fail = list.add - promise[ tuple[ 1 ] ] = list.add; - - // Handle state - if ( stateString ) { - list.add( - function() { - - // state = "resolved" (i.e., fulfilled) - // state = "rejected" - state = stateString; - }, - - // rejected_callbacks.disable - // fulfilled_callbacks.disable - tuples[ 3 - i ][ 2 ].disable, - - // rejected_handlers.disable - // fulfilled_handlers.disable - tuples[ 3 - i ][ 3 ].disable, - - // progress_callbacks.lock - tuples[ 0 ][ 2 ].lock, - - // progress_handlers.lock - tuples[ 0 ][ 3 ].lock - ); - } - - // progress_handlers.fire - // fulfilled_handlers.fire - // rejected_handlers.fire - list.add( tuple[ 3 ].fire ); - - // deferred.notify = function() { deferred.notifyWith(...) } - // deferred.resolve = function() { deferred.resolveWith(...) } - // deferred.reject = function() { deferred.rejectWith(...) } - deferred[ tuple[ 0 ] ] = function() { - deferred[ tuple[ 0 ] + "With" ]( this === deferred ? undefined : this, arguments ); - return this; - }; - - // deferred.notifyWith = list.fireWith - // deferred.resolveWith = list.fireWith - // deferred.rejectWith = list.fireWith - deferred[ tuple[ 0 ] + "With" ] = list.fireWith; - } ); - - // Make the deferred a promise - promise.promise( deferred ); - - // Call given func if any - if ( func ) { - func.call( deferred, deferred ); - } - - // All done! - return deferred; - }, - - // Deferred helper - when: function( singleValue ) { - var - - // count of uncompleted subordinates - remaining = arguments.length, - - // count of unprocessed arguments - i = remaining, - - // subordinate fulfillment data - resolveContexts = Array( i ), - resolveValues = slice.call( arguments ), - - // the master Deferred - master = jQuery.Deferred(), - - // subordinate callback factory - updateFunc = function( i ) { - return function( value ) { - resolveContexts[ i ] = this; - resolveValues[ i ] = arguments.length > 1 ? slice.call( arguments ) : value; - if ( !( --remaining ) ) { - master.resolveWith( resolveContexts, resolveValues ); - } - }; - }; - - // Single- and empty arguments are adopted like Promise.resolve - if ( remaining <= 1 ) { - adoptValue( singleValue, master.done( updateFunc( i ) ).resolve, master.reject, - !remaining ); - - // Use .then() to unwrap secondary thenables (cf. gh-3000) - if ( master.state() === "pending" || - isFunction( resolveValues[ i ] && resolveValues[ i ].then ) ) { - - return master.then(); - } - } - - // Multiple arguments are aggregated like Promise.all array elements - while ( i-- ) { - adoptValue( resolveValues[ i ], updateFunc( i ), master.reject ); - } - - return master.promise(); - } -} ); - - -// These usually indicate a programmer mistake during development, -// warn about them ASAP rather than swallowing them by default. -var rerrorNames = /^(Eval|Internal|Range|Reference|Syntax|Type|URI)Error$/; - -jQuery.Deferred.exceptionHook = function( error, stack ) { - - // Support: IE 8 - 9 only - // Console exists when dev tools are open, which can happen at any time - if ( window.console && window.console.warn && error && rerrorNames.test( error.name ) ) { - window.console.warn( "jQuery.Deferred exception: " + error.message, error.stack, stack ); - } -}; - - - - -jQuery.readyException = function( error ) { - window.setTimeout( function() { - throw error; - } ); -}; - - - - -// The deferred used on DOM ready -var readyList = jQuery.Deferred(); - -jQuery.fn.ready = function( fn ) { - - readyList - .then( fn ) - - // Wrap jQuery.readyException in a function so that the lookup - // happens at the time of error handling instead of callback - // registration. - .catch( function( error ) { - jQuery.readyException( error ); - } ); - - return this; -}; - -jQuery.extend( { - - // Is the DOM ready to be used? Set to true once it occurs. - isReady: false, - - // A counter to track how many items to wait for before - // the ready event fires. See #6781 - readyWait: 1, - - // Handle when the DOM is ready - ready: function( wait ) { - - // Abort if there are pending holds or we're already ready - if ( wait === true ? --jQuery.readyWait : jQuery.isReady ) { - return; - } - - // Remember that the DOM is ready - jQuery.isReady = true; - - // If a normal DOM Ready event fired, decrement, and wait if need be - if ( wait !== true && --jQuery.readyWait > 0 ) { - return; - } - - // If there are functions bound, to execute - readyList.resolveWith( document, [ jQuery ] ); - } -} ); - -jQuery.ready.then = readyList.then; - -// The ready event handler and self cleanup method -function completed() { - document.removeEventListener( "DOMContentLoaded", completed ); - window.removeEventListener( "load", completed ); - jQuery.ready(); -} - -// Catch cases where $(document).ready() is called -// after the browser event has already occurred. -// Support: IE <=9 - 10 only -// Older IE sometimes signals "interactive" too soon -if ( document.readyState === "complete" || - ( document.readyState !== "loading" && !document.documentElement.doScroll ) ) { - - // Handle it asynchronously to allow scripts the opportunity to delay ready - window.setTimeout( jQuery.ready ); - -} else { - - // Use the handy event callback - document.addEventListener( "DOMContentLoaded", completed ); - - // A fallback to window.onload, that will always work - window.addEventListener( "load", completed ); -} - - - - -// Multifunctional method to get and set values of a collection -// The value/s can optionally be executed if it's a function -var access = function( elems, fn, key, value, chainable, emptyGet, raw ) { - var i = 0, - len = elems.length, - bulk = key == null; - - // Sets many values - if ( toType( key ) === "object" ) { - chainable = true; - for ( i in key ) { - access( elems, fn, i, key[ i ], true, emptyGet, raw ); - } - - // Sets one value - } else if ( value !== undefined ) { - chainable = true; - - if ( !isFunction( value ) ) { - raw = true; - } - - if ( bulk ) { - - // Bulk operations run against the entire set - if ( raw ) { - fn.call( elems, value ); - fn = null; - - // ...except when executing function values - } else { - bulk = fn; - fn = function( elem, key, value ) { - return bulk.call( jQuery( elem ), value ); - }; - } - } - - if ( fn ) { - for ( ; i < len; i++ ) { - fn( - elems[ i ], key, raw ? - value : - value.call( elems[ i ], i, fn( elems[ i ], key ) ) - ); - } - } - } - - if ( chainable ) { - return elems; - } - - // Gets - if ( bulk ) { - return fn.call( elems ); - } - - return len ? fn( elems[ 0 ], key ) : emptyGet; -}; - - -// Matches dashed string for camelizing -var rmsPrefix = /^-ms-/, - rdashAlpha = /-([a-z])/g; - -// Used by camelCase as callback to replace() -function fcamelCase( all, letter ) { - return letter.toUpperCase(); -} - -// Convert dashed to camelCase; used by the css and data modules -// Support: IE <=9 - 11, Edge 12 - 15 -// Microsoft forgot to hump their vendor prefix (#9572) -function camelCase( string ) { - return string.replace( rmsPrefix, "ms-" ).replace( rdashAlpha, fcamelCase ); -} -var acceptData = function( owner ) { - - // Accepts only: - // - Node - // - Node.ELEMENT_NODE - // - Node.DOCUMENT_NODE - // - Object - // - Any - return owner.nodeType === 1 || owner.nodeType === 9 || !( +owner.nodeType ); -}; - - - - -function Data() { - this.expando = jQuery.expando + Data.uid++; -} - -Data.uid = 1; - -Data.prototype = { - - cache: function( owner ) { - - // Check if the owner object already has a cache - var value = owner[ this.expando ]; - - // If not, create one - if ( !value ) { - value = {}; - - // We can accept data for non-element nodes in modern browsers, - // but we should not, see #8335. - // Always return an empty object. - if ( acceptData( owner ) ) { - - // If it is a node unlikely to be stringify-ed or looped over - // use plain assignment - if ( owner.nodeType ) { - owner[ this.expando ] = value; - - // Otherwise secure it in a non-enumerable property - // configurable must be true to allow the property to be - // deleted when data is removed - } else { - Object.defineProperty( owner, this.expando, { - value: value, - configurable: true - } ); - } - } - } - - return value; - }, - set: function( owner, data, value ) { - var prop, - cache = this.cache( owner ); - - // Handle: [ owner, key, value ] args - // Always use camelCase key (gh-2257) - if ( typeof data === "string" ) { - cache[ camelCase( data ) ] = value; - - // Handle: [ owner, { properties } ] args - } else { - - // Copy the properties one-by-one to the cache object - for ( prop in data ) { - cache[ camelCase( prop ) ] = data[ prop ]; - } - } - return cache; - }, - get: function( owner, key ) { - return key === undefined ? - this.cache( owner ) : - - // Always use camelCase key (gh-2257) - owner[ this.expando ] && owner[ this.expando ][ camelCase( key ) ]; - }, - access: function( owner, key, value ) { - - // In cases where either: - // - // 1. No key was specified - // 2. A string key was specified, but no value provided - // - // Take the "read" path and allow the get method to determine - // which value to return, respectively either: - // - // 1. The entire cache object - // 2. The data stored at the key - // - if ( key === undefined || - ( ( key && typeof key === "string" ) && value === undefined ) ) { - - return this.get( owner, key ); - } - - // When the key is not a string, or both a key and value - // are specified, set or extend (existing objects) with either: - // - // 1. An object of properties - // 2. A key and value - // - this.set( owner, key, value ); - - // Since the "set" path can have two possible entry points - // return the expected data based on which path was taken[*] - return value !== undefined ? value : key; - }, - remove: function( owner, key ) { - var i, - cache = owner[ this.expando ]; - - if ( cache === undefined ) { - return; - } - - if ( key !== undefined ) { - - // Support array or space separated string of keys - if ( Array.isArray( key ) ) { - - // If key is an array of keys... - // We always set camelCase keys, so remove that. - key = key.map( camelCase ); - } else { - key = camelCase( key ); - - // If a key with the spaces exists, use it. - // Otherwise, create an array by matching non-whitespace - key = key in cache ? - [ key ] : - ( key.match( rnothtmlwhite ) || [] ); - } - - i = key.length; - - while ( i-- ) { - delete cache[ key[ i ] ]; - } - } - - // Remove the expando if there's no more data - if ( key === undefined || jQuery.isEmptyObject( cache ) ) { - - // Support: Chrome <=35 - 45 - // Webkit & Blink performance suffers when deleting properties - // from DOM nodes, so set to undefined instead - // https://bugs.chromium.org/p/chromium/issues/detail?id=378607 (bug restricted) - if ( owner.nodeType ) { - owner[ this.expando ] = undefined; - } else { - delete owner[ this.expando ]; - } - } - }, - hasData: function( owner ) { - var cache = owner[ this.expando ]; - return cache !== undefined && !jQuery.isEmptyObject( cache ); - } -}; -var dataPriv = new Data(); - -var dataUser = new Data(); - - - -// Implementation Summary -// -// 1. Enforce API surface and semantic compatibility with 1.9.x branch -// 2. Improve the module's maintainability by reducing the storage -// paths to a single mechanism. -// 3. Use the same single mechanism to support "private" and "user" data. -// 4. _Never_ expose "private" data to user code (TODO: Drop _data, _removeData) -// 5. Avoid exposing implementation details on user objects (eg. expando properties) -// 6. Provide a clear path for implementation upgrade to WeakMap in 2014 - -var rbrace = /^(?:\{[\w\W]*\}|\[[\w\W]*\])$/, - rmultiDash = /[A-Z]/g; - -function getData( data ) { - if ( data === "true" ) { - return true; - } - - if ( data === "false" ) { - return false; - } - - if ( data === "null" ) { - return null; - } - - // Only convert to a number if it doesn't change the string - if ( data === +data + "" ) { - return +data; - } - - if ( rbrace.test( data ) ) { - return JSON.parse( data ); - } - - return data; -} - -function dataAttr( elem, key, data ) { - var name; - - // If nothing was found internally, try to fetch any - // data from the HTML5 data-* attribute - if ( data === undefined && elem.nodeType === 1 ) { - name = "data-" + key.replace( rmultiDash, "-$&" ).toLowerCase(); - data = elem.getAttribute( name ); - - if ( typeof data === "string" ) { - try { - data = getData( data ); - } catch ( e ) {} - - // Make sure we set the data so it isn't changed later - dataUser.set( elem, key, data ); - } else { - data = undefined; - } - } - return data; -} - -jQuery.extend( { - hasData: function( elem ) { - return dataUser.hasData( elem ) || dataPriv.hasData( elem ); - }, - - data: function( elem, name, data ) { - return dataUser.access( elem, name, data ); - }, - - removeData: function( elem, name ) { - dataUser.remove( elem, name ); - }, - - // TODO: Now that all calls to _data and _removeData have been replaced - // with direct calls to dataPriv methods, these can be deprecated. - _data: function( elem, name, data ) { - return dataPriv.access( elem, name, data ); - }, - - _removeData: function( elem, name ) { - dataPriv.remove( elem, name ); - } -} ); - -jQuery.fn.extend( { - data: function( key, value ) { - var i, name, data, - elem = this[ 0 ], - attrs = elem && elem.attributes; - - // Gets all values - if ( key === undefined ) { - if ( this.length ) { - data = dataUser.get( elem ); - - if ( elem.nodeType === 1 && !dataPriv.get( elem, "hasDataAttrs" ) ) { - i = attrs.length; - while ( i-- ) { - - // Support: IE 11 only - // The attrs elements can be null (#14894) - if ( attrs[ i ] ) { - name = attrs[ i ].name; - if ( name.indexOf( "data-" ) === 0 ) { - name = camelCase( name.slice( 5 ) ); - dataAttr( elem, name, data[ name ] ); - } - } - } - dataPriv.set( elem, "hasDataAttrs", true ); - } - } - - return data; - } - - // Sets multiple values - if ( typeof key === "object" ) { - return this.each( function() { - dataUser.set( this, key ); - } ); - } - - return access( this, function( value ) { - var data; - - // The calling jQuery object (element matches) is not empty - // (and therefore has an element appears at this[ 0 ]) and the - // `value` parameter was not undefined. An empty jQuery object - // will result in `undefined` for elem = this[ 0 ] which will - // throw an exception if an attempt to read a data cache is made. - if ( elem && value === undefined ) { - - // Attempt to get data from the cache - // The key will always be camelCased in Data - data = dataUser.get( elem, key ); - if ( data !== undefined ) { - return data; - } - - // Attempt to "discover" the data in - // HTML5 custom data-* attrs - data = dataAttr( elem, key ); - if ( data !== undefined ) { - return data; - } - - // We tried really hard, but the data doesn't exist. - return; - } - - // Set the data... - this.each( function() { - - // We always store the camelCased key - dataUser.set( this, key, value ); - } ); - }, null, value, arguments.length > 1, null, true ); - }, - - removeData: function( key ) { - return this.each( function() { - dataUser.remove( this, key ); - } ); - } -} ); - - -jQuery.extend( { - queue: function( elem, type, data ) { - var queue; - - if ( elem ) { - type = ( type || "fx" ) + "queue"; - queue = dataPriv.get( elem, type ); - - // Speed up dequeue by getting out quickly if this is just a lookup - if ( data ) { - if ( !queue || Array.isArray( data ) ) { - queue = dataPriv.access( elem, type, jQuery.makeArray( data ) ); - } else { - queue.push( data ); - } - } - return queue || []; - } - }, - - dequeue: function( elem, type ) { - type = type || "fx"; - - var queue = jQuery.queue( elem, type ), - startLength = queue.length, - fn = queue.shift(), - hooks = jQuery._queueHooks( elem, type ), - next = function() { - jQuery.dequeue( elem, type ); - }; - - // If the fx queue is dequeued, always remove the progress sentinel - if ( fn === "inprogress" ) { - fn = queue.shift(); - startLength--; - } - - if ( fn ) { - - // Add a progress sentinel to prevent the fx queue from being - // automatically dequeued - if ( type === "fx" ) { - queue.unshift( "inprogress" ); - } - - // Clear up the last queue stop function - delete hooks.stop; - fn.call( elem, next, hooks ); - } - - if ( !startLength && hooks ) { - hooks.empty.fire(); - } - }, - - // Not public - generate a queueHooks object, or return the current one - _queueHooks: function( elem, type ) { - var key = type + "queueHooks"; - return dataPriv.get( elem, key ) || dataPriv.access( elem, key, { - empty: jQuery.Callbacks( "once memory" ).add( function() { - dataPriv.remove( elem, [ type + "queue", key ] ); - } ) - } ); - } -} ); - -jQuery.fn.extend( { - queue: function( type, data ) { - var setter = 2; - - if ( typeof type !== "string" ) { - data = type; - type = "fx"; - setter--; - } - - if ( arguments.length < setter ) { - return jQuery.queue( this[ 0 ], type ); - } - - return data === undefined ? - this : - this.each( function() { - var queue = jQuery.queue( this, type, data ); - - // Ensure a hooks for this queue - jQuery._queueHooks( this, type ); - - if ( type === "fx" && queue[ 0 ] !== "inprogress" ) { - jQuery.dequeue( this, type ); - } - } ); - }, - dequeue: function( type ) { - return this.each( function() { - jQuery.dequeue( this, type ); - } ); - }, - clearQueue: function( type ) { - return this.queue( type || "fx", [] ); - }, - - // Get a promise resolved when queues of a certain type - // are emptied (fx is the type by default) - promise: function( type, obj ) { - var tmp, - count = 1, - defer = jQuery.Deferred(), - elements = this, - i = this.length, - resolve = function() { - if ( !( --count ) ) { - defer.resolveWith( elements, [ elements ] ); - } - }; - - if ( typeof type !== "string" ) { - obj = type; - type = undefined; - } - type = type || "fx"; - - while ( i-- ) { - tmp = dataPriv.get( elements[ i ], type + "queueHooks" ); - if ( tmp && tmp.empty ) { - count++; - tmp.empty.add( resolve ); - } - } - resolve(); - return defer.promise( obj ); - } -} ); -var pnum = ( /[+-]?(?:\d*\.|)\d+(?:[eE][+-]?\d+|)/ ).source; - -var rcssNum = new RegExp( "^(?:([+-])=|)(" + pnum + ")([a-z%]*)$", "i" ); - - -var cssExpand = [ "Top", "Right", "Bottom", "Left" ]; - -var documentElement = document.documentElement; - - - - var isAttached = function( elem ) { - return jQuery.contains( elem.ownerDocument, elem ); - }, - composed = { composed: true }; - - // Support: IE 9 - 11+, Edge 12 - 18+, iOS 10.0 - 10.2 only - // Check attachment across shadow DOM boundaries when possible (gh-3504) - // Support: iOS 10.0-10.2 only - // Early iOS 10 versions support `attachShadow` but not `getRootNode`, - // leading to errors. We need to check for `getRootNode`. - if ( documentElement.getRootNode ) { - isAttached = function( elem ) { - return jQuery.contains( elem.ownerDocument, elem ) || - elem.getRootNode( composed ) === elem.ownerDocument; - }; - } -var isHiddenWithinTree = function( elem, el ) { - - // isHiddenWithinTree might be called from jQuery#filter function; - // in that case, element will be second argument - elem = el || elem; - - // Inline style trumps all - return elem.style.display === "none" || - elem.style.display === "" && - - // Otherwise, check computed style - // Support: Firefox <=43 - 45 - // Disconnected elements can have computed display: none, so first confirm that elem is - // in the document. - isAttached( elem ) && - - jQuery.css( elem, "display" ) === "none"; - }; - -var swap = function( elem, options, callback, args ) { - var ret, name, - old = {}; - - // Remember the old values, and insert the new ones - for ( name in options ) { - old[ name ] = elem.style[ name ]; - elem.style[ name ] = options[ name ]; - } - - ret = callback.apply( elem, args || [] ); - - // Revert the old values - for ( name in options ) { - elem.style[ name ] = old[ name ]; - } - - return ret; -}; - - - - -function adjustCSS( elem, prop, valueParts, tween ) { - var adjusted, scale, - maxIterations = 20, - currentValue = tween ? - function() { - return tween.cur(); - } : - function() { - return jQuery.css( elem, prop, "" ); - }, - initial = currentValue(), - unit = valueParts && valueParts[ 3 ] || ( jQuery.cssNumber[ prop ] ? "" : "px" ), - - // Starting value computation is required for potential unit mismatches - initialInUnit = elem.nodeType && - ( jQuery.cssNumber[ prop ] || unit !== "px" && +initial ) && - rcssNum.exec( jQuery.css( elem, prop ) ); - - if ( initialInUnit && initialInUnit[ 3 ] !== unit ) { - - // Support: Firefox <=54 - // Halve the iteration target value to prevent interference from CSS upper bounds (gh-2144) - initial = initial / 2; - - // Trust units reported by jQuery.css - unit = unit || initialInUnit[ 3 ]; - - // Iteratively approximate from a nonzero starting point - initialInUnit = +initial || 1; - - while ( maxIterations-- ) { - - // Evaluate and update our best guess (doubling guesses that zero out). - // Finish if the scale equals or crosses 1 (making the old*new product non-positive). - jQuery.style( elem, prop, initialInUnit + unit ); - if ( ( 1 - scale ) * ( 1 - ( scale = currentValue() / initial || 0.5 ) ) <= 0 ) { - maxIterations = 0; - } - initialInUnit = initialInUnit / scale; - - } - - initialInUnit = initialInUnit * 2; - jQuery.style( elem, prop, initialInUnit + unit ); - - // Make sure we update the tween properties later on - valueParts = valueParts || []; - } - - if ( valueParts ) { - initialInUnit = +initialInUnit || +initial || 0; - - // Apply relative offset (+=/-=) if specified - adjusted = valueParts[ 1 ] ? - initialInUnit + ( valueParts[ 1 ] + 1 ) * valueParts[ 2 ] : - +valueParts[ 2 ]; - if ( tween ) { - tween.unit = unit; - tween.start = initialInUnit; - tween.end = adjusted; - } - } - return adjusted; -} - - -var defaultDisplayMap = {}; - -function getDefaultDisplay( elem ) { - var temp, - doc = elem.ownerDocument, - nodeName = elem.nodeName, - display = defaultDisplayMap[ nodeName ]; - - if ( display ) { - return display; - } - - temp = doc.body.appendChild( doc.createElement( nodeName ) ); - display = jQuery.css( temp, "display" ); - - temp.parentNode.removeChild( temp ); - - if ( display === "none" ) { - display = "block"; - } - defaultDisplayMap[ nodeName ] = display; - - return display; -} - -function showHide( elements, show ) { - var display, elem, - values = [], - index = 0, - length = elements.length; - - // Determine new display value for elements that need to change - for ( ; index < length; index++ ) { - elem = elements[ index ]; - if ( !elem.style ) { - continue; - } - - display = elem.style.display; - if ( show ) { - - // Since we force visibility upon cascade-hidden elements, an immediate (and slow) - // check is required in this first loop unless we have a nonempty display value (either - // inline or about-to-be-restored) - if ( display === "none" ) { - values[ index ] = dataPriv.get( elem, "display" ) || null; - if ( !values[ index ] ) { - elem.style.display = ""; - } - } - if ( elem.style.display === "" && isHiddenWithinTree( elem ) ) { - values[ index ] = getDefaultDisplay( elem ); - } - } else { - if ( display !== "none" ) { - values[ index ] = "none"; - - // Remember what we're overwriting - dataPriv.set( elem, "display", display ); - } - } - } - - // Set the display of the elements in a second loop to avoid constant reflow - for ( index = 0; index < length; index++ ) { - if ( values[ index ] != null ) { - elements[ index ].style.display = values[ index ]; - } - } - - return elements; -} - -jQuery.fn.extend( { - show: function() { - return showHide( this, true ); - }, - hide: function() { - return showHide( this ); - }, - toggle: function( state ) { - if ( typeof state === "boolean" ) { - return state ? this.show() : this.hide(); - } - - return this.each( function() { - if ( isHiddenWithinTree( this ) ) { - jQuery( this ).show(); - } else { - jQuery( this ).hide(); - } - } ); - } -} ); -var rcheckableType = ( /^(?:checkbox|radio)$/i ); - -var rtagName = ( /<([a-z][^\/\0>\x20\t\r\n\f]*)/i ); - -var rscriptType = ( /^$|^module$|\/(?:java|ecma)script/i ); - - - -// We have to close these tags to support XHTML (#13200) -var wrapMap = { - - // Support: IE <=9 only - option: [ 1, "" ], - - // XHTML parsers do not magically insert elements in the - // same way that tag soup parsers do. So we cannot shorten - // this by omitting
    ", "
    " ], - col: [ 2, "", "
    " ], - tr: [ 2, "", "
    " ], - td: [ 3, "", "
    " ], - - _default: [ 0, "", "" ] -}; - -// Support: IE <=9 only -wrapMap.optgroup = wrapMap.option; - -wrapMap.tbody = wrapMap.tfoot = wrapMap.colgroup = wrapMap.caption = wrapMap.thead; -wrapMap.th = wrapMap.td; - - -function getAll( context, tag ) { - - // Support: IE <=9 - 11 only - // Use typeof to avoid zero-argument method invocation on host objects (#15151) - var ret; - - if ( typeof context.getElementsByTagName !== "undefined" ) { - ret = context.getElementsByTagName( tag || "*" ); - - } else if ( typeof context.querySelectorAll !== "undefined" ) { - ret = context.querySelectorAll( tag || "*" ); - - } else { - ret = []; - } - - if ( tag === undefined || tag && nodeName( context, tag ) ) { - return jQuery.merge( [ context ], ret ); - } - - return ret; -} - - -// Mark scripts as having already been evaluated -function setGlobalEval( elems, refElements ) { - var i = 0, - l = elems.length; - - for ( ; i < l; i++ ) { - dataPriv.set( - elems[ i ], - "globalEval", - !refElements || dataPriv.get( refElements[ i ], "globalEval" ) - ); - } -} - - -var rhtml = /<|&#?\w+;/; - -function buildFragment( elems, context, scripts, selection, ignored ) { - var elem, tmp, tag, wrap, attached, j, - fragment = context.createDocumentFragment(), - nodes = [], - i = 0, - l = elems.length; - - for ( ; i < l; i++ ) { - elem = elems[ i ]; - - if ( elem || elem === 0 ) { - - // Add nodes directly - if ( toType( elem ) === "object" ) { - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - jQuery.merge( nodes, elem.nodeType ? [ elem ] : elem ); - - // Convert non-html into a text node - } else if ( !rhtml.test( elem ) ) { - nodes.push( context.createTextNode( elem ) ); - - // Convert html into DOM nodes - } else { - tmp = tmp || fragment.appendChild( context.createElement( "div" ) ); - - // Deserialize a standard representation - tag = ( rtagName.exec( elem ) || [ "", "" ] )[ 1 ].toLowerCase(); - wrap = wrapMap[ tag ] || wrapMap._default; - tmp.innerHTML = wrap[ 1 ] + jQuery.htmlPrefilter( elem ) + wrap[ 2 ]; - - // Descend through wrappers to the right content - j = wrap[ 0 ]; - while ( j-- ) { - tmp = tmp.lastChild; - } - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - jQuery.merge( nodes, tmp.childNodes ); - - // Remember the top-level container - tmp = fragment.firstChild; - - // Ensure the created nodes are orphaned (#12392) - tmp.textContent = ""; - } - } - } - - // Remove wrapper from fragment - fragment.textContent = ""; - - i = 0; - while ( ( elem = nodes[ i++ ] ) ) { - - // Skip elements already in the context collection (trac-4087) - if ( selection && jQuery.inArray( elem, selection ) > -1 ) { - if ( ignored ) { - ignored.push( elem ); - } - continue; - } - - attached = isAttached( elem ); - - // Append to fragment - tmp = getAll( fragment.appendChild( elem ), "script" ); - - // Preserve script evaluation history - if ( attached ) { - setGlobalEval( tmp ); - } - - // Capture executables - if ( scripts ) { - j = 0; - while ( ( elem = tmp[ j++ ] ) ) { - if ( rscriptType.test( elem.type || "" ) ) { - scripts.push( elem ); - } - } - } - } - - return fragment; -} - - -( function() { - var fragment = document.createDocumentFragment(), - div = fragment.appendChild( document.createElement( "div" ) ), - input = document.createElement( "input" ); - - // Support: Android 4.0 - 4.3 only - // Check state lost if the name is set (#11217) - // Support: Windows Web Apps (WWA) - // `name` and `type` must use .setAttribute for WWA (#14901) - input.setAttribute( "type", "radio" ); - input.setAttribute( "checked", "checked" ); - input.setAttribute( "name", "t" ); - - div.appendChild( input ); - - // Support: Android <=4.1 only - // Older WebKit doesn't clone checked state correctly in fragments - support.checkClone = div.cloneNode( true ).cloneNode( true ).lastChild.checked; - - // Support: IE <=11 only - // Make sure textarea (and checkbox) defaultValue is properly cloned - div.innerHTML = ""; - support.noCloneChecked = !!div.cloneNode( true ).lastChild.defaultValue; -} )(); - - -var - rkeyEvent = /^key/, - rmouseEvent = /^(?:mouse|pointer|contextmenu|drag|drop)|click/, - rtypenamespace = /^([^.]*)(?:\.(.+)|)/; - -function returnTrue() { - return true; -} - -function returnFalse() { - return false; -} - -// Support: IE <=9 - 11+ -// focus() and blur() are asynchronous, except when they are no-op. -// So expect focus to be synchronous when the element is already active, -// and blur to be synchronous when the element is not already active. -// (focus and blur are always synchronous in other supported browsers, -// this just defines when we can count on it). -function expectSync( elem, type ) { - return ( elem === safeActiveElement() ) === ( type === "focus" ); -} - -// Support: IE <=9 only -// Accessing document.activeElement can throw unexpectedly -// https://bugs.jquery.com/ticket/13393 -function safeActiveElement() { - try { - return document.activeElement; - } catch ( err ) { } -} - -function on( elem, types, selector, data, fn, one ) { - var origFn, type; - - // Types can be a map of types/handlers - if ( typeof types === "object" ) { - - // ( types-Object, selector, data ) - if ( typeof selector !== "string" ) { - - // ( types-Object, data ) - data = data || selector; - selector = undefined; - } - for ( type in types ) { - on( elem, type, selector, data, types[ type ], one ); - } - return elem; - } - - if ( data == null && fn == null ) { - - // ( types, fn ) - fn = selector; - data = selector = undefined; - } else if ( fn == null ) { - if ( typeof selector === "string" ) { - - // ( types, selector, fn ) - fn = data; - data = undefined; - } else { - - // ( types, data, fn ) - fn = data; - data = selector; - selector = undefined; - } - } - if ( fn === false ) { - fn = returnFalse; - } else if ( !fn ) { - return elem; - } - - if ( one === 1 ) { - origFn = fn; - fn = function( event ) { - - // Can use an empty set, since event contains the info - jQuery().off( event ); - return origFn.apply( this, arguments ); - }; - - // Use same guid so caller can remove using origFn - fn.guid = origFn.guid || ( origFn.guid = jQuery.guid++ ); - } - return elem.each( function() { - jQuery.event.add( this, types, fn, data, selector ); - } ); -} - -/* - * Helper functions for managing events -- not part of the public interface. - * Props to Dean Edwards' addEvent library for many of the ideas. - */ -jQuery.event = { - - global: {}, - - add: function( elem, types, handler, data, selector ) { - - var handleObjIn, eventHandle, tmp, - events, t, handleObj, - special, handlers, type, namespaces, origType, - elemData = dataPriv.get( elem ); - - // Don't attach events to noData or text/comment nodes (but allow plain objects) - if ( !elemData ) { - return; - } - - // Caller can pass in an object of custom data in lieu of the handler - if ( handler.handler ) { - handleObjIn = handler; - handler = handleObjIn.handler; - selector = handleObjIn.selector; - } - - // Ensure that invalid selectors throw exceptions at attach time - // Evaluate against documentElement in case elem is a non-element node (e.g., document) - if ( selector ) { - jQuery.find.matchesSelector( documentElement, selector ); - } - - // Make sure that the handler has a unique ID, used to find/remove it later - if ( !handler.guid ) { - handler.guid = jQuery.guid++; - } - - // Init the element's event structure and main handler, if this is the first - if ( !( events = elemData.events ) ) { - events = elemData.events = {}; - } - if ( !( eventHandle = elemData.handle ) ) { - eventHandle = elemData.handle = function( e ) { - - // Discard the second event of a jQuery.event.trigger() and - // when an event is called after a page has unloaded - return typeof jQuery !== "undefined" && jQuery.event.triggered !== e.type ? - jQuery.event.dispatch.apply( elem, arguments ) : undefined; - }; - } - - // Handle multiple events separated by a space - types = ( types || "" ).match( rnothtmlwhite ) || [ "" ]; - t = types.length; - while ( t-- ) { - tmp = rtypenamespace.exec( types[ t ] ) || []; - type = origType = tmp[ 1 ]; - namespaces = ( tmp[ 2 ] || "" ).split( "." ).sort(); - - // There *must* be a type, no attaching namespace-only handlers - if ( !type ) { - continue; - } - - // If event changes its type, use the special event handlers for the changed type - special = jQuery.event.special[ type ] || {}; - - // If selector defined, determine special event api type, otherwise given type - type = ( selector ? special.delegateType : special.bindType ) || type; - - // Update special based on newly reset type - special = jQuery.event.special[ type ] || {}; - - // handleObj is passed to all event handlers - handleObj = jQuery.extend( { - type: type, - origType: origType, - data: data, - handler: handler, - guid: handler.guid, - selector: selector, - needsContext: selector && jQuery.expr.match.needsContext.test( selector ), - namespace: namespaces.join( "." ) - }, handleObjIn ); - - // Init the event handler queue if we're the first - if ( !( handlers = events[ type ] ) ) { - handlers = events[ type ] = []; - handlers.delegateCount = 0; - - // Only use addEventListener if the special events handler returns false - if ( !special.setup || - special.setup.call( elem, data, namespaces, eventHandle ) === false ) { - - if ( elem.addEventListener ) { - elem.addEventListener( type, eventHandle ); - } - } - } - - if ( special.add ) { - special.add.call( elem, handleObj ); - - if ( !handleObj.handler.guid ) { - handleObj.handler.guid = handler.guid; - } - } - - // Add to the element's handler list, delegates in front - if ( selector ) { - handlers.splice( handlers.delegateCount++, 0, handleObj ); - } else { - handlers.push( handleObj ); - } - - // Keep track of which events have ever been used, for event optimization - jQuery.event.global[ type ] = true; - } - - }, - - // Detach an event or set of events from an element - remove: function( elem, types, handler, selector, mappedTypes ) { - - var j, origCount, tmp, - events, t, handleObj, - special, handlers, type, namespaces, origType, - elemData = dataPriv.hasData( elem ) && dataPriv.get( elem ); - - if ( !elemData || !( events = elemData.events ) ) { - return; - } - - // Once for each type.namespace in types; type may be omitted - types = ( types || "" ).match( rnothtmlwhite ) || [ "" ]; - t = types.length; - while ( t-- ) { - tmp = rtypenamespace.exec( types[ t ] ) || []; - type = origType = tmp[ 1 ]; - namespaces = ( tmp[ 2 ] || "" ).split( "." ).sort(); - - // Unbind all events (on this namespace, if provided) for the element - if ( !type ) { - for ( type in events ) { - jQuery.event.remove( elem, type + types[ t ], handler, selector, true ); - } - continue; - } - - special = jQuery.event.special[ type ] || {}; - type = ( selector ? special.delegateType : special.bindType ) || type; - handlers = events[ type ] || []; - tmp = tmp[ 2 ] && - new RegExp( "(^|\\.)" + namespaces.join( "\\.(?:.*\\.|)" ) + "(\\.|$)" ); - - // Remove matching events - origCount = j = handlers.length; - while ( j-- ) { - handleObj = handlers[ j ]; - - if ( ( mappedTypes || origType === handleObj.origType ) && - ( !handler || handler.guid === handleObj.guid ) && - ( !tmp || tmp.test( handleObj.namespace ) ) && - ( !selector || selector === handleObj.selector || - selector === "**" && handleObj.selector ) ) { - handlers.splice( j, 1 ); - - if ( handleObj.selector ) { - handlers.delegateCount--; - } - if ( special.remove ) { - special.remove.call( elem, handleObj ); - } - } - } - - // Remove generic event handler if we removed something and no more handlers exist - // (avoids potential for endless recursion during removal of special event handlers) - if ( origCount && !handlers.length ) { - if ( !special.teardown || - special.teardown.call( elem, namespaces, elemData.handle ) === false ) { - - jQuery.removeEvent( elem, type, elemData.handle ); - } - - delete events[ type ]; - } - } - - // Remove data and the expando if it's no longer used - if ( jQuery.isEmptyObject( events ) ) { - dataPriv.remove( elem, "handle events" ); - } - }, - - dispatch: function( nativeEvent ) { - - // Make a writable jQuery.Event from the native event object - var event = jQuery.event.fix( nativeEvent ); - - var i, j, ret, matched, handleObj, handlerQueue, - args = new Array( arguments.length ), - handlers = ( dataPriv.get( this, "events" ) || {} )[ event.type ] || [], - special = jQuery.event.special[ event.type ] || {}; - - // Use the fix-ed jQuery.Event rather than the (read-only) native event - args[ 0 ] = event; - - for ( i = 1; i < arguments.length; i++ ) { - args[ i ] = arguments[ i ]; - } - - event.delegateTarget = this; - - // Call the preDispatch hook for the mapped type, and let it bail if desired - if ( special.preDispatch && special.preDispatch.call( this, event ) === false ) { - return; - } - - // Determine handlers - handlerQueue = jQuery.event.handlers.call( this, event, handlers ); - - // Run delegates first; they may want to stop propagation beneath us - i = 0; - while ( ( matched = handlerQueue[ i++ ] ) && !event.isPropagationStopped() ) { - event.currentTarget = matched.elem; - - j = 0; - while ( ( handleObj = matched.handlers[ j++ ] ) && - !event.isImmediatePropagationStopped() ) { - - // If the event is namespaced, then each handler is only invoked if it is - // specially universal or its namespaces are a superset of the event's. - if ( !event.rnamespace || handleObj.namespace === false || - event.rnamespace.test( handleObj.namespace ) ) { - - event.handleObj = handleObj; - event.data = handleObj.data; - - ret = ( ( jQuery.event.special[ handleObj.origType ] || {} ).handle || - handleObj.handler ).apply( matched.elem, args ); - - if ( ret !== undefined ) { - if ( ( event.result = ret ) === false ) { - event.preventDefault(); - event.stopPropagation(); - } - } - } - } - } - - // Call the postDispatch hook for the mapped type - if ( special.postDispatch ) { - special.postDispatch.call( this, event ); - } - - return event.result; - }, - - handlers: function( event, handlers ) { - var i, handleObj, sel, matchedHandlers, matchedSelectors, - handlerQueue = [], - delegateCount = handlers.delegateCount, - cur = event.target; - - // Find delegate handlers - if ( delegateCount && - - // Support: IE <=9 - // Black-hole SVG instance trees (trac-13180) - cur.nodeType && - - // Support: Firefox <=42 - // Suppress spec-violating clicks indicating a non-primary pointer button (trac-3861) - // https://www.w3.org/TR/DOM-Level-3-Events/#event-type-click - // Support: IE 11 only - // ...but not arrow key "clicks" of radio inputs, which can have `button` -1 (gh-2343) - !( event.type === "click" && event.button >= 1 ) ) { - - for ( ; cur !== this; cur = cur.parentNode || this ) { - - // Don't check non-elements (#13208) - // Don't process clicks on disabled elements (#6911, #8165, #11382, #11764) - if ( cur.nodeType === 1 && !( event.type === "click" && cur.disabled === true ) ) { - matchedHandlers = []; - matchedSelectors = {}; - for ( i = 0; i < delegateCount; i++ ) { - handleObj = handlers[ i ]; - - // Don't conflict with Object.prototype properties (#13203) - sel = handleObj.selector + " "; - - if ( matchedSelectors[ sel ] === undefined ) { - matchedSelectors[ sel ] = handleObj.needsContext ? - jQuery( sel, this ).index( cur ) > -1 : - jQuery.find( sel, this, null, [ cur ] ).length; - } - if ( matchedSelectors[ sel ] ) { - matchedHandlers.push( handleObj ); - } - } - if ( matchedHandlers.length ) { - handlerQueue.push( { elem: cur, handlers: matchedHandlers } ); - } - } - } - } - - // Add the remaining (directly-bound) handlers - cur = this; - if ( delegateCount < handlers.length ) { - handlerQueue.push( { elem: cur, handlers: handlers.slice( delegateCount ) } ); - } - - return handlerQueue; - }, - - addProp: function( name, hook ) { - Object.defineProperty( jQuery.Event.prototype, name, { - enumerable: true, - configurable: true, - - get: isFunction( hook ) ? - function() { - if ( this.originalEvent ) { - return hook( this.originalEvent ); - } - } : - function() { - if ( this.originalEvent ) { - return this.originalEvent[ name ]; - } - }, - - set: function( value ) { - Object.defineProperty( this, name, { - enumerable: true, - configurable: true, - writable: true, - value: value - } ); - } - } ); - }, - - fix: function( originalEvent ) { - return originalEvent[ jQuery.expando ] ? - originalEvent : - new jQuery.Event( originalEvent ); - }, - - special: { - load: { - - // Prevent triggered image.load events from bubbling to window.load - noBubble: true - }, - click: { - - // Utilize native event to ensure correct state for checkable inputs - setup: function( data ) { - - // For mutual compressibility with _default, replace `this` access with a local var. - // `|| data` is dead code meant only to preserve the variable through minification. - var el = this || data; - - // Claim the first handler - if ( rcheckableType.test( el.type ) && - el.click && nodeName( el, "input" ) ) { - - // dataPriv.set( el, "click", ... ) - leverageNative( el, "click", returnTrue ); - } - - // Return false to allow normal processing in the caller - return false; - }, - trigger: function( data ) { - - // For mutual compressibility with _default, replace `this` access with a local var. - // `|| data` is dead code meant only to preserve the variable through minification. - var el = this || data; - - // Force setup before triggering a click - if ( rcheckableType.test( el.type ) && - el.click && nodeName( el, "input" ) ) { - - leverageNative( el, "click" ); - } - - // Return non-false to allow normal event-path propagation - return true; - }, - - // For cross-browser consistency, suppress native .click() on links - // Also prevent it if we're currently inside a leveraged native-event stack - _default: function( event ) { - var target = event.target; - return rcheckableType.test( target.type ) && - target.click && nodeName( target, "input" ) && - dataPriv.get( target, "click" ) || - nodeName( target, "a" ); - } - }, - - beforeunload: { - postDispatch: function( event ) { - - // Support: Firefox 20+ - // Firefox doesn't alert if the returnValue field is not set. - if ( event.result !== undefined && event.originalEvent ) { - event.originalEvent.returnValue = event.result; - } - } - } - } -}; - -// Ensure the presence of an event listener that handles manually-triggered -// synthetic events by interrupting progress until reinvoked in response to -// *native* events that it fires directly, ensuring that state changes have -// already occurred before other listeners are invoked. -function leverageNative( el, type, expectSync ) { - - // Missing expectSync indicates a trigger call, which must force setup through jQuery.event.add - if ( !expectSync ) { - if ( dataPriv.get( el, type ) === undefined ) { - jQuery.event.add( el, type, returnTrue ); - } - return; - } - - // Register the controller as a special universal handler for all event namespaces - dataPriv.set( el, type, false ); - jQuery.event.add( el, type, { - namespace: false, - handler: function( event ) { - var notAsync, result, - saved = dataPriv.get( this, type ); - - if ( ( event.isTrigger & 1 ) && this[ type ] ) { - - // Interrupt processing of the outer synthetic .trigger()ed event - // Saved data should be false in such cases, but might be a leftover capture object - // from an async native handler (gh-4350) - if ( !saved.length ) { - - // Store arguments for use when handling the inner native event - // There will always be at least one argument (an event object), so this array - // will not be confused with a leftover capture object. - saved = slice.call( arguments ); - dataPriv.set( this, type, saved ); - - // Trigger the native event and capture its result - // Support: IE <=9 - 11+ - // focus() and blur() are asynchronous - notAsync = expectSync( this, type ); - this[ type ](); - result = dataPriv.get( this, type ); - if ( saved !== result || notAsync ) { - dataPriv.set( this, type, false ); - } else { - result = {}; - } - if ( saved !== result ) { - - // Cancel the outer synthetic event - event.stopImmediatePropagation(); - event.preventDefault(); - return result.value; - } - - // If this is an inner synthetic event for an event with a bubbling surrogate - // (focus or blur), assume that the surrogate already propagated from triggering the - // native event and prevent that from happening again here. - // This technically gets the ordering wrong w.r.t. to `.trigger()` (in which the - // bubbling surrogate propagates *after* the non-bubbling base), but that seems - // less bad than duplication. - } else if ( ( jQuery.event.special[ type ] || {} ).delegateType ) { - event.stopPropagation(); - } - - // If this is a native event triggered above, everything is now in order - // Fire an inner synthetic event with the original arguments - } else if ( saved.length ) { - - // ...and capture the result - dataPriv.set( this, type, { - value: jQuery.event.trigger( - - // Support: IE <=9 - 11+ - // Extend with the prototype to reset the above stopImmediatePropagation() - jQuery.extend( saved[ 0 ], jQuery.Event.prototype ), - saved.slice( 1 ), - this - ) - } ); - - // Abort handling of the native event - event.stopImmediatePropagation(); - } - } - } ); -} - -jQuery.removeEvent = function( elem, type, handle ) { - - // This "if" is needed for plain objects - if ( elem.removeEventListener ) { - elem.removeEventListener( type, handle ); - } -}; - -jQuery.Event = function( src, props ) { - - // Allow instantiation without the 'new' keyword - if ( !( this instanceof jQuery.Event ) ) { - return new jQuery.Event( src, props ); - } - - // Event object - if ( src && src.type ) { - this.originalEvent = src; - this.type = src.type; - - // Events bubbling up the document may have been marked as prevented - // by a handler lower down the tree; reflect the correct value. - this.isDefaultPrevented = src.defaultPrevented || - src.defaultPrevented === undefined && - - // Support: Android <=2.3 only - src.returnValue === false ? - returnTrue : - returnFalse; - - // Create target properties - // Support: Safari <=6 - 7 only - // Target should not be a text node (#504, #13143) - this.target = ( src.target && src.target.nodeType === 3 ) ? - src.target.parentNode : - src.target; - - this.currentTarget = src.currentTarget; - this.relatedTarget = src.relatedTarget; - - // Event type - } else { - this.type = src; - } - - // Put explicitly provided properties onto the event object - if ( props ) { - jQuery.extend( this, props ); - } - - // Create a timestamp if incoming event doesn't have one - this.timeStamp = src && src.timeStamp || Date.now(); - - // Mark it as fixed - this[ jQuery.expando ] = true; -}; - -// jQuery.Event is based on DOM3 Events as specified by the ECMAScript Language Binding -// https://www.w3.org/TR/2003/WD-DOM-Level-3-Events-20030331/ecma-script-binding.html -jQuery.Event.prototype = { - constructor: jQuery.Event, - isDefaultPrevented: returnFalse, - isPropagationStopped: returnFalse, - isImmediatePropagationStopped: returnFalse, - isSimulated: false, - - preventDefault: function() { - var e = this.originalEvent; - - this.isDefaultPrevented = returnTrue; - - if ( e && !this.isSimulated ) { - e.preventDefault(); - } - }, - stopPropagation: function() { - var e = this.originalEvent; - - this.isPropagationStopped = returnTrue; - - if ( e && !this.isSimulated ) { - e.stopPropagation(); - } - }, - stopImmediatePropagation: function() { - var e = this.originalEvent; - - this.isImmediatePropagationStopped = returnTrue; - - if ( e && !this.isSimulated ) { - e.stopImmediatePropagation(); - } - - this.stopPropagation(); - } -}; - -// Includes all common event props including KeyEvent and MouseEvent specific props -jQuery.each( { - altKey: true, - bubbles: true, - cancelable: true, - changedTouches: true, - ctrlKey: true, - detail: true, - eventPhase: true, - metaKey: true, - pageX: true, - pageY: true, - shiftKey: true, - view: true, - "char": true, - code: true, - charCode: true, - key: true, - keyCode: true, - button: true, - buttons: true, - clientX: true, - clientY: true, - offsetX: true, - offsetY: true, - pointerId: true, - pointerType: true, - screenX: true, - screenY: true, - targetTouches: true, - toElement: true, - touches: true, - - which: function( event ) { - var button = event.button; - - // Add which for key events - if ( event.which == null && rkeyEvent.test( event.type ) ) { - return event.charCode != null ? event.charCode : event.keyCode; - } - - // Add which for click: 1 === left; 2 === middle; 3 === right - if ( !event.which && button !== undefined && rmouseEvent.test( event.type ) ) { - if ( button & 1 ) { - return 1; - } - - if ( button & 2 ) { - return 3; - } - - if ( button & 4 ) { - return 2; - } - - return 0; - } - - return event.which; - } -}, jQuery.event.addProp ); - -jQuery.each( { focus: "focusin", blur: "focusout" }, function( type, delegateType ) { - jQuery.event.special[ type ] = { - - // Utilize native event if possible so blur/focus sequence is correct - setup: function() { - - // Claim the first handler - // dataPriv.set( this, "focus", ... ) - // dataPriv.set( this, "blur", ... ) - leverageNative( this, type, expectSync ); - - // Return false to allow normal processing in the caller - return false; - }, - trigger: function() { - - // Force setup before trigger - leverageNative( this, type ); - - // Return non-false to allow normal event-path propagation - return true; - }, - - delegateType: delegateType - }; -} ); - -// Create mouseenter/leave events using mouseover/out and event-time checks -// so that event delegation works in jQuery. -// Do the same for pointerenter/pointerleave and pointerover/pointerout -// -// Support: Safari 7 only -// Safari sends mouseenter too often; see: -// https://bugs.chromium.org/p/chromium/issues/detail?id=470258 -// for the description of the bug (it existed in older Chrome versions as well). -jQuery.each( { - mouseenter: "mouseover", - mouseleave: "mouseout", - pointerenter: "pointerover", - pointerleave: "pointerout" -}, function( orig, fix ) { - jQuery.event.special[ orig ] = { - delegateType: fix, - bindType: fix, - - handle: function( event ) { - var ret, - target = this, - related = event.relatedTarget, - handleObj = event.handleObj; - - // For mouseenter/leave call the handler if related is outside the target. - // NB: No relatedTarget if the mouse left/entered the browser window - if ( !related || ( related !== target && !jQuery.contains( target, related ) ) ) { - event.type = handleObj.origType; - ret = handleObj.handler.apply( this, arguments ); - event.type = fix; - } - return ret; - } - }; -} ); - -jQuery.fn.extend( { - - on: function( types, selector, data, fn ) { - return on( this, types, selector, data, fn ); - }, - one: function( types, selector, data, fn ) { - return on( this, types, selector, data, fn, 1 ); - }, - off: function( types, selector, fn ) { - var handleObj, type; - if ( types && types.preventDefault && types.handleObj ) { - - // ( event ) dispatched jQuery.Event - handleObj = types.handleObj; - jQuery( types.delegateTarget ).off( - handleObj.namespace ? - handleObj.origType + "." + handleObj.namespace : - handleObj.origType, - handleObj.selector, - handleObj.handler - ); - return this; - } - if ( typeof types === "object" ) { - - // ( types-object [, selector] ) - for ( type in types ) { - this.off( type, selector, types[ type ] ); - } - return this; - } - if ( selector === false || typeof selector === "function" ) { - - // ( types [, fn] ) - fn = selector; - selector = undefined; - } - if ( fn === false ) { - fn = returnFalse; - } - return this.each( function() { - jQuery.event.remove( this, types, fn, selector ); - } ); - } -} ); - - -var - - /* eslint-disable max-len */ - - // See https://github.com/eslint/eslint/issues/3229 - rxhtmlTag = /<(?!area|br|col|embed|hr|img|input|link|meta|param)(([a-z][^\/\0>\x20\t\r\n\f]*)[^>]*)\/>/gi, - - /* eslint-enable */ - - // Support: IE <=10 - 11, Edge 12 - 13 only - // In IE/Edge using regex groups here causes severe slowdowns. - // See https://connect.microsoft.com/IE/feedback/details/1736512/ - rnoInnerhtml = /\s*$/g; - -// Prefer a tbody over its parent table for containing new rows -function manipulationTarget( elem, content ) { - if ( nodeName( elem, "table" ) && - nodeName( content.nodeType !== 11 ? content : content.firstChild, "tr" ) ) { - - return jQuery( elem ).children( "tbody" )[ 0 ] || elem; - } - - return elem; -} - -// Replace/restore the type attribute of script elements for safe DOM manipulation -function disableScript( elem ) { - elem.type = ( elem.getAttribute( "type" ) !== null ) + "/" + elem.type; - return elem; -} -function restoreScript( elem ) { - if ( ( elem.type || "" ).slice( 0, 5 ) === "true/" ) { - elem.type = elem.type.slice( 5 ); - } else { - elem.removeAttribute( "type" ); - } - - return elem; -} - -function cloneCopyEvent( src, dest ) { - var i, l, type, pdataOld, pdataCur, udataOld, udataCur, events; - - if ( dest.nodeType !== 1 ) { - return; - } - - // 1. Copy private data: events, handlers, etc. - if ( dataPriv.hasData( src ) ) { - pdataOld = dataPriv.access( src ); - pdataCur = dataPriv.set( dest, pdataOld ); - events = pdataOld.events; - - if ( events ) { - delete pdataCur.handle; - pdataCur.events = {}; - - for ( type in events ) { - for ( i = 0, l = events[ type ].length; i < l; i++ ) { - jQuery.event.add( dest, type, events[ type ][ i ] ); - } - } - } - } - - // 2. Copy user data - if ( dataUser.hasData( src ) ) { - udataOld = dataUser.access( src ); - udataCur = jQuery.extend( {}, udataOld ); - - dataUser.set( dest, udataCur ); - } -} - -// Fix IE bugs, see support tests -function fixInput( src, dest ) { - var nodeName = dest.nodeName.toLowerCase(); - - // Fails to persist the checked state of a cloned checkbox or radio button. - if ( nodeName === "input" && rcheckableType.test( src.type ) ) { - dest.checked = src.checked; - - // Fails to return the selected option to the default selected state when cloning options - } else if ( nodeName === "input" || nodeName === "textarea" ) { - dest.defaultValue = src.defaultValue; - } -} - -function domManip( collection, args, callback, ignored ) { - - // Flatten any nested arrays - args = concat.apply( [], args ); - - var fragment, first, scripts, hasScripts, node, doc, - i = 0, - l = collection.length, - iNoClone = l - 1, - value = args[ 0 ], - valueIsFunction = isFunction( value ); - - // We can't cloneNode fragments that contain checked, in WebKit - if ( valueIsFunction || - ( l > 1 && typeof value === "string" && - !support.checkClone && rchecked.test( value ) ) ) { - return collection.each( function( index ) { - var self = collection.eq( index ); - if ( valueIsFunction ) { - args[ 0 ] = value.call( this, index, self.html() ); - } - domManip( self, args, callback, ignored ); - } ); - } - - if ( l ) { - fragment = buildFragment( args, collection[ 0 ].ownerDocument, false, collection, ignored ); - first = fragment.firstChild; - - if ( fragment.childNodes.length === 1 ) { - fragment = first; - } - - // Require either new content or an interest in ignored elements to invoke the callback - if ( first || ignored ) { - scripts = jQuery.map( getAll( fragment, "script" ), disableScript ); - hasScripts = scripts.length; - - // Use the original fragment for the last item - // instead of the first because it can end up - // being emptied incorrectly in certain situations (#8070). - for ( ; i < l; i++ ) { - node = fragment; - - if ( i !== iNoClone ) { - node = jQuery.clone( node, true, true ); - - // Keep references to cloned scripts for later restoration - if ( hasScripts ) { - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - jQuery.merge( scripts, getAll( node, "script" ) ); - } - } - - callback.call( collection[ i ], node, i ); - } - - if ( hasScripts ) { - doc = scripts[ scripts.length - 1 ].ownerDocument; - - // Reenable scripts - jQuery.map( scripts, restoreScript ); - - // Evaluate executable scripts on first document insertion - for ( i = 0; i < hasScripts; i++ ) { - node = scripts[ i ]; - if ( rscriptType.test( node.type || "" ) && - !dataPriv.access( node, "globalEval" ) && - jQuery.contains( doc, node ) ) { - - if ( node.src && ( node.type || "" ).toLowerCase() !== "module" ) { - - // Optional AJAX dependency, but won't run scripts if not present - if ( jQuery._evalUrl && !node.noModule ) { - jQuery._evalUrl( node.src, { - nonce: node.nonce || node.getAttribute( "nonce" ) - } ); - } - } else { - DOMEval( node.textContent.replace( rcleanScript, "" ), node, doc ); - } - } - } - } - } - } - - return collection; -} - -function remove( elem, selector, keepData ) { - var node, - nodes = selector ? jQuery.filter( selector, elem ) : elem, - i = 0; - - for ( ; ( node = nodes[ i ] ) != null; i++ ) { - if ( !keepData && node.nodeType === 1 ) { - jQuery.cleanData( getAll( node ) ); - } - - if ( node.parentNode ) { - if ( keepData && isAttached( node ) ) { - setGlobalEval( getAll( node, "script" ) ); - } - node.parentNode.removeChild( node ); - } - } - - return elem; -} - -jQuery.extend( { - htmlPrefilter: function( html ) { - return html.replace( rxhtmlTag, "<$1>" ); - }, - - clone: function( elem, dataAndEvents, deepDataAndEvents ) { - var i, l, srcElements, destElements, - clone = elem.cloneNode( true ), - inPage = isAttached( elem ); - - // Fix IE cloning issues - if ( !support.noCloneChecked && ( elem.nodeType === 1 || elem.nodeType === 11 ) && - !jQuery.isXMLDoc( elem ) ) { - - // We eschew Sizzle here for performance reasons: https://jsperf.com/getall-vs-sizzle/2 - destElements = getAll( clone ); - srcElements = getAll( elem ); - - for ( i = 0, l = srcElements.length; i < l; i++ ) { - fixInput( srcElements[ i ], destElements[ i ] ); - } - } - - // Copy the events from the original to the clone - if ( dataAndEvents ) { - if ( deepDataAndEvents ) { - srcElements = srcElements || getAll( elem ); - destElements = destElements || getAll( clone ); - - for ( i = 0, l = srcElements.length; i < l; i++ ) { - cloneCopyEvent( srcElements[ i ], destElements[ i ] ); - } - } else { - cloneCopyEvent( elem, clone ); - } - } - - // Preserve script evaluation history - destElements = getAll( clone, "script" ); - if ( destElements.length > 0 ) { - setGlobalEval( destElements, !inPage && getAll( elem, "script" ) ); - } - - // Return the cloned set - return clone; - }, - - cleanData: function( elems ) { - var data, elem, type, - special = jQuery.event.special, - i = 0; - - for ( ; ( elem = elems[ i ] ) !== undefined; i++ ) { - if ( acceptData( elem ) ) { - if ( ( data = elem[ dataPriv.expando ] ) ) { - if ( data.events ) { - for ( type in data.events ) { - if ( special[ type ] ) { - jQuery.event.remove( elem, type ); - - // This is a shortcut to avoid jQuery.event.remove's overhead - } else { - jQuery.removeEvent( elem, type, data.handle ); - } - } - } - - // Support: Chrome <=35 - 45+ - // Assign undefined instead of using delete, see Data#remove - elem[ dataPriv.expando ] = undefined; - } - if ( elem[ dataUser.expando ] ) { - - // Support: Chrome <=35 - 45+ - // Assign undefined instead of using delete, see Data#remove - elem[ dataUser.expando ] = undefined; - } - } - } - } -} ); - -jQuery.fn.extend( { - detach: function( selector ) { - return remove( this, selector, true ); - }, - - remove: function( selector ) { - return remove( this, selector ); - }, - - text: function( value ) { - return access( this, function( value ) { - return value === undefined ? - jQuery.text( this ) : - this.empty().each( function() { - if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) { - this.textContent = value; - } - } ); - }, null, value, arguments.length ); - }, - - append: function() { - return domManip( this, arguments, function( elem ) { - if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) { - var target = manipulationTarget( this, elem ); - target.appendChild( elem ); - } - } ); - }, - - prepend: function() { - return domManip( this, arguments, function( elem ) { - if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) { - var target = manipulationTarget( this, elem ); - target.insertBefore( elem, target.firstChild ); - } - } ); - }, - - before: function() { - return domManip( this, arguments, function( elem ) { - if ( this.parentNode ) { - this.parentNode.insertBefore( elem, this ); - } - } ); - }, - - after: function() { - return domManip( this, arguments, function( elem ) { - if ( this.parentNode ) { - this.parentNode.insertBefore( elem, this.nextSibling ); - } - } ); - }, - - empty: function() { - var elem, - i = 0; - - for ( ; ( elem = this[ i ] ) != null; i++ ) { - if ( elem.nodeType === 1 ) { - - // Prevent memory leaks - jQuery.cleanData( getAll( elem, false ) ); - - // Remove any remaining nodes - elem.textContent = ""; - } - } - - return this; - }, - - clone: function( dataAndEvents, deepDataAndEvents ) { - dataAndEvents = dataAndEvents == null ? false : dataAndEvents; - deepDataAndEvents = deepDataAndEvents == null ? dataAndEvents : deepDataAndEvents; - - return this.map( function() { - return jQuery.clone( this, dataAndEvents, deepDataAndEvents ); - } ); - }, - - html: function( value ) { - return access( this, function( value ) { - var elem = this[ 0 ] || {}, - i = 0, - l = this.length; - - if ( value === undefined && elem.nodeType === 1 ) { - return elem.innerHTML; - } - - // See if we can take a shortcut and just use innerHTML - if ( typeof value === "string" && !rnoInnerhtml.test( value ) && - !wrapMap[ ( rtagName.exec( value ) || [ "", "" ] )[ 1 ].toLowerCase() ] ) { - - value = jQuery.htmlPrefilter( value ); - - try { - for ( ; i < l; i++ ) { - elem = this[ i ] || {}; - - // Remove element nodes and prevent memory leaks - if ( elem.nodeType === 1 ) { - jQuery.cleanData( getAll( elem, false ) ); - elem.innerHTML = value; - } - } - - elem = 0; - - // If using innerHTML throws an exception, use the fallback method - } catch ( e ) {} - } - - if ( elem ) { - this.empty().append( value ); - } - }, null, value, arguments.length ); - }, - - replaceWith: function() { - var ignored = []; - - // Make the changes, replacing each non-ignored context element with the new content - return domManip( this, arguments, function( elem ) { - var parent = this.parentNode; - - if ( jQuery.inArray( this, ignored ) < 0 ) { - jQuery.cleanData( getAll( this ) ); - if ( parent ) { - parent.replaceChild( elem, this ); - } - } - - // Force callback invocation - }, ignored ); - } -} ); - -jQuery.each( { - appendTo: "append", - prependTo: "prepend", - insertBefore: "before", - insertAfter: "after", - replaceAll: "replaceWith" -}, function( name, original ) { - jQuery.fn[ name ] = function( selector ) { - var elems, - ret = [], - insert = jQuery( selector ), - last = insert.length - 1, - i = 0; - - for ( ; i <= last; i++ ) { - elems = i === last ? this : this.clone( true ); - jQuery( insert[ i ] )[ original ]( elems ); - - // Support: Android <=4.0 only, PhantomJS 1 only - // .get() because push.apply(_, arraylike) throws on ancient WebKit - push.apply( ret, elems.get() ); - } - - return this.pushStack( ret ); - }; -} ); -var rnumnonpx = new RegExp( "^(" + pnum + ")(?!px)[a-z%]+$", "i" ); - -var getStyles = function( elem ) { - - // Support: IE <=11 only, Firefox <=30 (#15098, #14150) - // IE throws on elements created in popups - // FF meanwhile throws on frame elements through "defaultView.getComputedStyle" - var view = elem.ownerDocument.defaultView; - - if ( !view || !view.opener ) { - view = window; - } - - return view.getComputedStyle( elem ); - }; - -var rboxStyle = new RegExp( cssExpand.join( "|" ), "i" ); - - - -( function() { - - // Executing both pixelPosition & boxSizingReliable tests require only one layout - // so they're executed at the same time to save the second computation. - function computeStyleTests() { - - // This is a singleton, we need to execute it only once - if ( !div ) { - return; - } - - container.style.cssText = "position:absolute;left:-11111px;width:60px;" + - "margin-top:1px;padding:0;border:0"; - div.style.cssText = - "position:relative;display:block;box-sizing:border-box;overflow:scroll;" + - "margin:auto;border:1px;padding:1px;" + - "width:60%;top:1%"; - documentElement.appendChild( container ).appendChild( div ); - - var divStyle = window.getComputedStyle( div ); - pixelPositionVal = divStyle.top !== "1%"; - - // Support: Android 4.0 - 4.3 only, Firefox <=3 - 44 - reliableMarginLeftVal = roundPixelMeasures( divStyle.marginLeft ) === 12; - - // Support: Android 4.0 - 4.3 only, Safari <=9.1 - 10.1, iOS <=7.0 - 9.3 - // Some styles come back with percentage values, even though they shouldn't - div.style.right = "60%"; - pixelBoxStylesVal = roundPixelMeasures( divStyle.right ) === 36; - - // Support: IE 9 - 11 only - // Detect misreporting of content dimensions for box-sizing:border-box elements - boxSizingReliableVal = roundPixelMeasures( divStyle.width ) === 36; - - // Support: IE 9 only - // Detect overflow:scroll screwiness (gh-3699) - // Support: Chrome <=64 - // Don't get tricked when zoom affects offsetWidth (gh-4029) - div.style.position = "absolute"; - scrollboxSizeVal = roundPixelMeasures( div.offsetWidth / 3 ) === 12; - - documentElement.removeChild( container ); - - // Nullify the div so it wouldn't be stored in the memory and - // it will also be a sign that checks already performed - div = null; - } - - function roundPixelMeasures( measure ) { - return Math.round( parseFloat( measure ) ); - } - - var pixelPositionVal, boxSizingReliableVal, scrollboxSizeVal, pixelBoxStylesVal, - reliableMarginLeftVal, - container = document.createElement( "div" ), - div = document.createElement( "div" ); - - // Finish early in limited (non-browser) environments - if ( !div.style ) { - return; - } - - // Support: IE <=9 - 11 only - // Style of cloned element affects source element cloned (#8908) - div.style.backgroundClip = "content-box"; - div.cloneNode( true ).style.backgroundClip = ""; - support.clearCloneStyle = div.style.backgroundClip === "content-box"; - - jQuery.extend( support, { - boxSizingReliable: function() { - computeStyleTests(); - return boxSizingReliableVal; - }, - pixelBoxStyles: function() { - computeStyleTests(); - return pixelBoxStylesVal; - }, - pixelPosition: function() { - computeStyleTests(); - return pixelPositionVal; - }, - reliableMarginLeft: function() { - computeStyleTests(); - return reliableMarginLeftVal; - }, - scrollboxSize: function() { - computeStyleTests(); - return scrollboxSizeVal; - } - } ); -} )(); - - -function curCSS( elem, name, computed ) { - var width, minWidth, maxWidth, ret, - - // Support: Firefox 51+ - // Retrieving style before computed somehow - // fixes an issue with getting wrong values - // on detached elements - style = elem.style; - - computed = computed || getStyles( elem ); - - // getPropertyValue is needed for: - // .css('filter') (IE 9 only, #12537) - // .css('--customProperty) (#3144) - if ( computed ) { - ret = computed.getPropertyValue( name ) || computed[ name ]; - - if ( ret === "" && !isAttached( elem ) ) { - ret = jQuery.style( elem, name ); - } - - // A tribute to the "awesome hack by Dean Edwards" - // Android Browser returns percentage for some values, - // but width seems to be reliably pixels. - // This is against the CSSOM draft spec: - // https://drafts.csswg.org/cssom/#resolved-values - if ( !support.pixelBoxStyles() && rnumnonpx.test( ret ) && rboxStyle.test( name ) ) { - - // Remember the original values - width = style.width; - minWidth = style.minWidth; - maxWidth = style.maxWidth; - - // Put in the new values to get a computed value out - style.minWidth = style.maxWidth = style.width = ret; - ret = computed.width; - - // Revert the changed values - style.width = width; - style.minWidth = minWidth; - style.maxWidth = maxWidth; - } - } - - return ret !== undefined ? - - // Support: IE <=9 - 11 only - // IE returns zIndex value as an integer. - ret + "" : - ret; -} - - -function addGetHookIf( conditionFn, hookFn ) { - - // Define the hook, we'll check on the first run if it's really needed. - return { - get: function() { - if ( conditionFn() ) { - - // Hook not needed (or it's not possible to use it due - // to missing dependency), remove it. - delete this.get; - return; - } - - // Hook needed; redefine it so that the support test is not executed again. - return ( this.get = hookFn ).apply( this, arguments ); - } - }; -} - - -var cssPrefixes = [ "Webkit", "Moz", "ms" ], - emptyStyle = document.createElement( "div" ).style, - vendorProps = {}; - -// Return a vendor-prefixed property or undefined -function vendorPropName( name ) { - - // Check for vendor prefixed names - var capName = name[ 0 ].toUpperCase() + name.slice( 1 ), - i = cssPrefixes.length; - - while ( i-- ) { - name = cssPrefixes[ i ] + capName; - if ( name in emptyStyle ) { - return name; - } - } -} - -// Return a potentially-mapped jQuery.cssProps or vendor prefixed property -function finalPropName( name ) { - var final = jQuery.cssProps[ name ] || vendorProps[ name ]; - - if ( final ) { - return final; - } - if ( name in emptyStyle ) { - return name; - } - return vendorProps[ name ] = vendorPropName( name ) || name; -} - - -var - - // Swappable if display is none or starts with table - // except "table", "table-cell", or "table-caption" - // See here for display values: https://developer.mozilla.org/en-US/docs/CSS/display - rdisplayswap = /^(none|table(?!-c[ea]).+)/, - rcustomProp = /^--/, - cssShow = { position: "absolute", visibility: "hidden", display: "block" }, - cssNormalTransform = { - letterSpacing: "0", - fontWeight: "400" - }; - -function setPositiveNumber( elem, value, subtract ) { - - // Any relative (+/-) values have already been - // normalized at this point - var matches = rcssNum.exec( value ); - return matches ? - - // Guard against undefined "subtract", e.g., when used as in cssHooks - Math.max( 0, matches[ 2 ] - ( subtract || 0 ) ) + ( matches[ 3 ] || "px" ) : - value; -} - -function boxModelAdjustment( elem, dimension, box, isBorderBox, styles, computedVal ) { - var i = dimension === "width" ? 1 : 0, - extra = 0, - delta = 0; - - // Adjustment may not be necessary - if ( box === ( isBorderBox ? "border" : "content" ) ) { - return 0; - } - - for ( ; i < 4; i += 2 ) { - - // Both box models exclude margin - if ( box === "margin" ) { - delta += jQuery.css( elem, box + cssExpand[ i ], true, styles ); - } - - // If we get here with a content-box, we're seeking "padding" or "border" or "margin" - if ( !isBorderBox ) { - - // Add padding - delta += jQuery.css( elem, "padding" + cssExpand[ i ], true, styles ); - - // For "border" or "margin", add border - if ( box !== "padding" ) { - delta += jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles ); - - // But still keep track of it otherwise - } else { - extra += jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles ); - } - - // If we get here with a border-box (content + padding + border), we're seeking "content" or - // "padding" or "margin" - } else { - - // For "content", subtract padding - if ( box === "content" ) { - delta -= jQuery.css( elem, "padding" + cssExpand[ i ], true, styles ); - } - - // For "content" or "padding", subtract border - if ( box !== "margin" ) { - delta -= jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles ); - } - } - } - - // Account for positive content-box scroll gutter when requested by providing computedVal - if ( !isBorderBox && computedVal >= 0 ) { - - // offsetWidth/offsetHeight is a rounded sum of content, padding, scroll gutter, and border - // Assuming integer scroll gutter, subtract the rest and round down - delta += Math.max( 0, Math.ceil( - elem[ "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ) ] - - computedVal - - delta - - extra - - 0.5 - - // If offsetWidth/offsetHeight is unknown, then we can't determine content-box scroll gutter - // Use an explicit zero to avoid NaN (gh-3964) - ) ) || 0; - } - - return delta; -} - -function getWidthOrHeight( elem, dimension, extra ) { - - // Start with computed style - var styles = getStyles( elem ), - - // To avoid forcing a reflow, only fetch boxSizing if we need it (gh-4322). - // Fake content-box until we know it's needed to know the true value. - boxSizingNeeded = !support.boxSizingReliable() || extra, - isBorderBox = boxSizingNeeded && - jQuery.css( elem, "boxSizing", false, styles ) === "border-box", - valueIsBorderBox = isBorderBox, - - val = curCSS( elem, dimension, styles ), - offsetProp = "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ); - - // Support: Firefox <=54 - // Return a confounding non-pixel value or feign ignorance, as appropriate. - if ( rnumnonpx.test( val ) ) { - if ( !extra ) { - return val; - } - val = "auto"; - } - - - // Fall back to offsetWidth/offsetHeight when value is "auto" - // This happens for inline elements with no explicit setting (gh-3571) - // Support: Android <=4.1 - 4.3 only - // Also use offsetWidth/offsetHeight for misreported inline dimensions (gh-3602) - // Support: IE 9-11 only - // Also use offsetWidth/offsetHeight for when box sizing is unreliable - // We use getClientRects() to check for hidden/disconnected. - // In those cases, the computed value can be trusted to be border-box - if ( ( !support.boxSizingReliable() && isBorderBox || - val === "auto" || - !parseFloat( val ) && jQuery.css( elem, "display", false, styles ) === "inline" ) && - elem.getClientRects().length ) { - - isBorderBox = jQuery.css( elem, "boxSizing", false, styles ) === "border-box"; - - // Where available, offsetWidth/offsetHeight approximate border box dimensions. - // Where not available (e.g., SVG), assume unreliable box-sizing and interpret the - // retrieved value as a content box dimension. - valueIsBorderBox = offsetProp in elem; - if ( valueIsBorderBox ) { - val = elem[ offsetProp ]; - } - } - - // Normalize "" and auto - val = parseFloat( val ) || 0; - - // Adjust for the element's box model - return ( val + - boxModelAdjustment( - elem, - dimension, - extra || ( isBorderBox ? "border" : "content" ), - valueIsBorderBox, - styles, - - // Provide the current computed size to request scroll gutter calculation (gh-3589) - val - ) - ) + "px"; -} - -jQuery.extend( { - - // Add in style property hooks for overriding the default - // behavior of getting and setting a style property - cssHooks: { - opacity: { - get: function( elem, computed ) { - if ( computed ) { - - // We should always get a number back from opacity - var ret = curCSS( elem, "opacity" ); - return ret === "" ? "1" : ret; - } - } - } - }, - - // Don't automatically add "px" to these possibly-unitless properties - cssNumber: { - "animationIterationCount": true, - "columnCount": true, - "fillOpacity": true, - "flexGrow": true, - "flexShrink": true, - "fontWeight": true, - "gridArea": true, - "gridColumn": true, - "gridColumnEnd": true, - "gridColumnStart": true, - "gridRow": true, - "gridRowEnd": true, - "gridRowStart": true, - "lineHeight": true, - "opacity": true, - "order": true, - "orphans": true, - "widows": true, - "zIndex": true, - "zoom": true - }, - - // Add in properties whose names you wish to fix before - // setting or getting the value - cssProps: {}, - - // Get and set the style property on a DOM Node - style: function( elem, name, value, extra ) { - - // Don't set styles on text and comment nodes - if ( !elem || elem.nodeType === 3 || elem.nodeType === 8 || !elem.style ) { - return; - } - - // Make sure that we're working with the right name - var ret, type, hooks, - origName = camelCase( name ), - isCustomProp = rcustomProp.test( name ), - style = elem.style; - - // Make sure that we're working with the right name. We don't - // want to query the value if it is a CSS custom property - // since they are user-defined. - if ( !isCustomProp ) { - name = finalPropName( origName ); - } - - // Gets hook for the prefixed version, then unprefixed version - hooks = jQuery.cssHooks[ name ] || jQuery.cssHooks[ origName ]; - - // Check if we're setting a value - if ( value !== undefined ) { - type = typeof value; - - // Convert "+=" or "-=" to relative numbers (#7345) - if ( type === "string" && ( ret = rcssNum.exec( value ) ) && ret[ 1 ] ) { - value = adjustCSS( elem, name, ret ); - - // Fixes bug #9237 - type = "number"; - } - - // Make sure that null and NaN values aren't set (#7116) - if ( value == null || value !== value ) { - return; - } - - // If a number was passed in, add the unit (except for certain CSS properties) - // The isCustomProp check can be removed in jQuery 4.0 when we only auto-append - // "px" to a few hardcoded values. - if ( type === "number" && !isCustomProp ) { - value += ret && ret[ 3 ] || ( jQuery.cssNumber[ origName ] ? "" : "px" ); - } - - // background-* props affect original clone's values - if ( !support.clearCloneStyle && value === "" && name.indexOf( "background" ) === 0 ) { - style[ name ] = "inherit"; - } - - // If a hook was provided, use that value, otherwise just set the specified value - if ( !hooks || !( "set" in hooks ) || - ( value = hooks.set( elem, value, extra ) ) !== undefined ) { - - if ( isCustomProp ) { - style.setProperty( name, value ); - } else { - style[ name ] = value; - } - } - - } else { - - // If a hook was provided get the non-computed value from there - if ( hooks && "get" in hooks && - ( ret = hooks.get( elem, false, extra ) ) !== undefined ) { - - return ret; - } - - // Otherwise just get the value from the style object - return style[ name ]; - } - }, - - css: function( elem, name, extra, styles ) { - var val, num, hooks, - origName = camelCase( name ), - isCustomProp = rcustomProp.test( name ); - - // Make sure that we're working with the right name. We don't - // want to modify the value if it is a CSS custom property - // since they are user-defined. - if ( !isCustomProp ) { - name = finalPropName( origName ); - } - - // Try prefixed name followed by the unprefixed name - hooks = jQuery.cssHooks[ name ] || jQuery.cssHooks[ origName ]; - - // If a hook was provided get the computed value from there - if ( hooks && "get" in hooks ) { - val = hooks.get( elem, true, extra ); - } - - // Otherwise, if a way to get the computed value exists, use that - if ( val === undefined ) { - val = curCSS( elem, name, styles ); - } - - // Convert "normal" to computed value - if ( val === "normal" && name in cssNormalTransform ) { - val = cssNormalTransform[ name ]; - } - - // Make numeric if forced or a qualifier was provided and val looks numeric - if ( extra === "" || extra ) { - num = parseFloat( val ); - return extra === true || isFinite( num ) ? num || 0 : val; - } - - return val; - } -} ); - -jQuery.each( [ "height", "width" ], function( i, dimension ) { - jQuery.cssHooks[ dimension ] = { - get: function( elem, computed, extra ) { - if ( computed ) { - - // Certain elements can have dimension info if we invisibly show them - // but it must have a current display style that would benefit - return rdisplayswap.test( jQuery.css( elem, "display" ) ) && - - // Support: Safari 8+ - // Table columns in Safari have non-zero offsetWidth & zero - // getBoundingClientRect().width unless display is changed. - // Support: IE <=11 only - // Running getBoundingClientRect on a disconnected node - // in IE throws an error. - ( !elem.getClientRects().length || !elem.getBoundingClientRect().width ) ? - swap( elem, cssShow, function() { - return getWidthOrHeight( elem, dimension, extra ); - } ) : - getWidthOrHeight( elem, dimension, extra ); - } - }, - - set: function( elem, value, extra ) { - var matches, - styles = getStyles( elem ), - - // Only read styles.position if the test has a chance to fail - // to avoid forcing a reflow. - scrollboxSizeBuggy = !support.scrollboxSize() && - styles.position === "absolute", - - // To avoid forcing a reflow, only fetch boxSizing if we need it (gh-3991) - boxSizingNeeded = scrollboxSizeBuggy || extra, - isBorderBox = boxSizingNeeded && - jQuery.css( elem, "boxSizing", false, styles ) === "border-box", - subtract = extra ? - boxModelAdjustment( - elem, - dimension, - extra, - isBorderBox, - styles - ) : - 0; - - // Account for unreliable border-box dimensions by comparing offset* to computed and - // faking a content-box to get border and padding (gh-3699) - if ( isBorderBox && scrollboxSizeBuggy ) { - subtract -= Math.ceil( - elem[ "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ) ] - - parseFloat( styles[ dimension ] ) - - boxModelAdjustment( elem, dimension, "border", false, styles ) - - 0.5 - ); - } - - // Convert to pixels if value adjustment is needed - if ( subtract && ( matches = rcssNum.exec( value ) ) && - ( matches[ 3 ] || "px" ) !== "px" ) { - - elem.style[ dimension ] = value; - value = jQuery.css( elem, dimension ); - } - - return setPositiveNumber( elem, value, subtract ); - } - }; -} ); - -jQuery.cssHooks.marginLeft = addGetHookIf( support.reliableMarginLeft, - function( elem, computed ) { - if ( computed ) { - return ( parseFloat( curCSS( elem, "marginLeft" ) ) || - elem.getBoundingClientRect().left - - swap( elem, { marginLeft: 0 }, function() { - return elem.getBoundingClientRect().left; - } ) - ) + "px"; - } - } -); - -// These hooks are used by animate to expand properties -jQuery.each( { - margin: "", - padding: "", - border: "Width" -}, function( prefix, suffix ) { - jQuery.cssHooks[ prefix + suffix ] = { - expand: function( value ) { - var i = 0, - expanded = {}, - - // Assumes a single number if not a string - parts = typeof value === "string" ? value.split( " " ) : [ value ]; - - for ( ; i < 4; i++ ) { - expanded[ prefix + cssExpand[ i ] + suffix ] = - parts[ i ] || parts[ i - 2 ] || parts[ 0 ]; - } - - return expanded; - } - }; - - if ( prefix !== "margin" ) { - jQuery.cssHooks[ prefix + suffix ].set = setPositiveNumber; - } -} ); - -jQuery.fn.extend( { - css: function( name, value ) { - return access( this, function( elem, name, value ) { - var styles, len, - map = {}, - i = 0; - - if ( Array.isArray( name ) ) { - styles = getStyles( elem ); - len = name.length; - - for ( ; i < len; i++ ) { - map[ name[ i ] ] = jQuery.css( elem, name[ i ], false, styles ); - } - - return map; - } - - return value !== undefined ? - jQuery.style( elem, name, value ) : - jQuery.css( elem, name ); - }, name, value, arguments.length > 1 ); - } -} ); - - -function Tween( elem, options, prop, end, easing ) { - return new Tween.prototype.init( elem, options, prop, end, easing ); -} -jQuery.Tween = Tween; - -Tween.prototype = { - constructor: Tween, - init: function( elem, options, prop, end, easing, unit ) { - this.elem = elem; - this.prop = prop; - this.easing = easing || jQuery.easing._default; - this.options = options; - this.start = this.now = this.cur(); - this.end = end; - this.unit = unit || ( jQuery.cssNumber[ prop ] ? "" : "px" ); - }, - cur: function() { - var hooks = Tween.propHooks[ this.prop ]; - - return hooks && hooks.get ? - hooks.get( this ) : - Tween.propHooks._default.get( this ); - }, - run: function( percent ) { - var eased, - hooks = Tween.propHooks[ this.prop ]; - - if ( this.options.duration ) { - this.pos = eased = jQuery.easing[ this.easing ]( - percent, this.options.duration * percent, 0, 1, this.options.duration - ); - } else { - this.pos = eased = percent; - } - this.now = ( this.end - this.start ) * eased + this.start; - - if ( this.options.step ) { - this.options.step.call( this.elem, this.now, this ); - } - - if ( hooks && hooks.set ) { - hooks.set( this ); - } else { - Tween.propHooks._default.set( this ); - } - return this; - } -}; - -Tween.prototype.init.prototype = Tween.prototype; - -Tween.propHooks = { - _default: { - get: function( tween ) { - var result; - - // Use a property on the element directly when it is not a DOM element, - // or when there is no matching style property that exists. - if ( tween.elem.nodeType !== 1 || - tween.elem[ tween.prop ] != null && tween.elem.style[ tween.prop ] == null ) { - return tween.elem[ tween.prop ]; - } - - // Passing an empty string as a 3rd parameter to .css will automatically - // attempt a parseFloat and fallback to a string if the parse fails. - // Simple values such as "10px" are parsed to Float; - // complex values such as "rotate(1rad)" are returned as-is. - result = jQuery.css( tween.elem, tween.prop, "" ); - - // Empty strings, null, undefined and "auto" are converted to 0. - return !result || result === "auto" ? 0 : result; - }, - set: function( tween ) { - - // Use step hook for back compat. - // Use cssHook if its there. - // Use .style if available and use plain properties where available. - if ( jQuery.fx.step[ tween.prop ] ) { - jQuery.fx.step[ tween.prop ]( tween ); - } else if ( tween.elem.nodeType === 1 && ( - jQuery.cssHooks[ tween.prop ] || - tween.elem.style[ finalPropName( tween.prop ) ] != null ) ) { - jQuery.style( tween.elem, tween.prop, tween.now + tween.unit ); - } else { - tween.elem[ tween.prop ] = tween.now; - } - } - } -}; - -// Support: IE <=9 only -// Panic based approach to setting things on disconnected nodes -Tween.propHooks.scrollTop = Tween.propHooks.scrollLeft = { - set: function( tween ) { - if ( tween.elem.nodeType && tween.elem.parentNode ) { - tween.elem[ tween.prop ] = tween.now; - } - } -}; - -jQuery.easing = { - linear: function( p ) { - return p; - }, - swing: function( p ) { - return 0.5 - Math.cos( p * Math.PI ) / 2; - }, - _default: "swing" -}; - -jQuery.fx = Tween.prototype.init; - -// Back compat <1.8 extension point -jQuery.fx.step = {}; - - - - -var - fxNow, inProgress, - rfxtypes = /^(?:toggle|show|hide)$/, - rrun = /queueHooks$/; - -function schedule() { - if ( inProgress ) { - if ( document.hidden === false && window.requestAnimationFrame ) { - window.requestAnimationFrame( schedule ); - } else { - window.setTimeout( schedule, jQuery.fx.interval ); - } - - jQuery.fx.tick(); - } -} - -// Animations created synchronously will run synchronously -function createFxNow() { - window.setTimeout( function() { - fxNow = undefined; - } ); - return ( fxNow = Date.now() ); -} - -// Generate parameters to create a standard animation -function genFx( type, includeWidth ) { - var which, - i = 0, - attrs = { height: type }; - - // If we include width, step value is 1 to do all cssExpand values, - // otherwise step value is 2 to skip over Left and Right - includeWidth = includeWidth ? 1 : 0; - for ( ; i < 4; i += 2 - includeWidth ) { - which = cssExpand[ i ]; - attrs[ "margin" + which ] = attrs[ "padding" + which ] = type; - } - - if ( includeWidth ) { - attrs.opacity = attrs.width = type; - } - - return attrs; -} - -function createTween( value, prop, animation ) { - var tween, - collection = ( Animation.tweeners[ prop ] || [] ).concat( Animation.tweeners[ "*" ] ), - index = 0, - length = collection.length; - for ( ; index < length; index++ ) { - if ( ( tween = collection[ index ].call( animation, prop, value ) ) ) { - - // We're done with this property - return tween; - } - } -} - -function defaultPrefilter( elem, props, opts ) { - var prop, value, toggle, hooks, oldfire, propTween, restoreDisplay, display, - isBox = "width" in props || "height" in props, - anim = this, - orig = {}, - style = elem.style, - hidden = elem.nodeType && isHiddenWithinTree( elem ), - dataShow = dataPriv.get( elem, "fxshow" ); - - // Queue-skipping animations hijack the fx hooks - if ( !opts.queue ) { - hooks = jQuery._queueHooks( elem, "fx" ); - if ( hooks.unqueued == null ) { - hooks.unqueued = 0; - oldfire = hooks.empty.fire; - hooks.empty.fire = function() { - if ( !hooks.unqueued ) { - oldfire(); - } - }; - } - hooks.unqueued++; - - anim.always( function() { - - // Ensure the complete handler is called before this completes - anim.always( function() { - hooks.unqueued--; - if ( !jQuery.queue( elem, "fx" ).length ) { - hooks.empty.fire(); - } - } ); - } ); - } - - // Detect show/hide animations - for ( prop in props ) { - value = props[ prop ]; - if ( rfxtypes.test( value ) ) { - delete props[ prop ]; - toggle = toggle || value === "toggle"; - if ( value === ( hidden ? "hide" : "show" ) ) { - - // Pretend to be hidden if this is a "show" and - // there is still data from a stopped show/hide - if ( value === "show" && dataShow && dataShow[ prop ] !== undefined ) { - hidden = true; - - // Ignore all other no-op show/hide data - } else { - continue; - } - } - orig[ prop ] = dataShow && dataShow[ prop ] || jQuery.style( elem, prop ); - } - } - - // Bail out if this is a no-op like .hide().hide() - propTween = !jQuery.isEmptyObject( props ); - if ( !propTween && jQuery.isEmptyObject( orig ) ) { - return; - } - - // Restrict "overflow" and "display" styles during box animations - if ( isBox && elem.nodeType === 1 ) { - - // Support: IE <=9 - 11, Edge 12 - 15 - // Record all 3 overflow attributes because IE does not infer the shorthand - // from identically-valued overflowX and overflowY and Edge just mirrors - // the overflowX value there. - opts.overflow = [ style.overflow, style.overflowX, style.overflowY ]; - - // Identify a display type, preferring old show/hide data over the CSS cascade - restoreDisplay = dataShow && dataShow.display; - if ( restoreDisplay == null ) { - restoreDisplay = dataPriv.get( elem, "display" ); - } - display = jQuery.css( elem, "display" ); - if ( display === "none" ) { - if ( restoreDisplay ) { - display = restoreDisplay; - } else { - - // Get nonempty value(s) by temporarily forcing visibility - showHide( [ elem ], true ); - restoreDisplay = elem.style.display || restoreDisplay; - display = jQuery.css( elem, "display" ); - showHide( [ elem ] ); - } - } - - // Animate inline elements as inline-block - if ( display === "inline" || display === "inline-block" && restoreDisplay != null ) { - if ( jQuery.css( elem, "float" ) === "none" ) { - - // Restore the original display value at the end of pure show/hide animations - if ( !propTween ) { - anim.done( function() { - style.display = restoreDisplay; - } ); - if ( restoreDisplay == null ) { - display = style.display; - restoreDisplay = display === "none" ? "" : display; - } - } - style.display = "inline-block"; - } - } - } - - if ( opts.overflow ) { - style.overflow = "hidden"; - anim.always( function() { - style.overflow = opts.overflow[ 0 ]; - style.overflowX = opts.overflow[ 1 ]; - style.overflowY = opts.overflow[ 2 ]; - } ); - } - - // Implement show/hide animations - propTween = false; - for ( prop in orig ) { - - // General show/hide setup for this element animation - if ( !propTween ) { - if ( dataShow ) { - if ( "hidden" in dataShow ) { - hidden = dataShow.hidden; - } - } else { - dataShow = dataPriv.access( elem, "fxshow", { display: restoreDisplay } ); - } - - // Store hidden/visible for toggle so `.stop().toggle()` "reverses" - if ( toggle ) { - dataShow.hidden = !hidden; - } - - // Show elements before animating them - if ( hidden ) { - showHide( [ elem ], true ); - } - - /* eslint-disable no-loop-func */ - - anim.done( function() { - - /* eslint-enable no-loop-func */ - - // The final step of a "hide" animation is actually hiding the element - if ( !hidden ) { - showHide( [ elem ] ); - } - dataPriv.remove( elem, "fxshow" ); - for ( prop in orig ) { - jQuery.style( elem, prop, orig[ prop ] ); - } - } ); - } - - // Per-property setup - propTween = createTween( hidden ? dataShow[ prop ] : 0, prop, anim ); - if ( !( prop in dataShow ) ) { - dataShow[ prop ] = propTween.start; - if ( hidden ) { - propTween.end = propTween.start; - propTween.start = 0; - } - } - } -} - -function propFilter( props, specialEasing ) { - var index, name, easing, value, hooks; - - // camelCase, specialEasing and expand cssHook pass - for ( index in props ) { - name = camelCase( index ); - easing = specialEasing[ name ]; - value = props[ index ]; - if ( Array.isArray( value ) ) { - easing = value[ 1 ]; - value = props[ index ] = value[ 0 ]; - } - - if ( index !== name ) { - props[ name ] = value; - delete props[ index ]; - } - - hooks = jQuery.cssHooks[ name ]; - if ( hooks && "expand" in hooks ) { - value = hooks.expand( value ); - delete props[ name ]; - - // Not quite $.extend, this won't overwrite existing keys. - // Reusing 'index' because we have the correct "name" - for ( index in value ) { - if ( !( index in props ) ) { - props[ index ] = value[ index ]; - specialEasing[ index ] = easing; - } - } - } else { - specialEasing[ name ] = easing; - } - } -} - -function Animation( elem, properties, options ) { - var result, - stopped, - index = 0, - length = Animation.prefilters.length, - deferred = jQuery.Deferred().always( function() { - - // Don't match elem in the :animated selector - delete tick.elem; - } ), - tick = function() { - if ( stopped ) { - return false; - } - var currentTime = fxNow || createFxNow(), - remaining = Math.max( 0, animation.startTime + animation.duration - currentTime ), - - // Support: Android 2.3 only - // Archaic crash bug won't allow us to use `1 - ( 0.5 || 0 )` (#12497) - temp = remaining / animation.duration || 0, - percent = 1 - temp, - index = 0, - length = animation.tweens.length; - - for ( ; index < length; index++ ) { - animation.tweens[ index ].run( percent ); - } - - deferred.notifyWith( elem, [ animation, percent, remaining ] ); - - // If there's more to do, yield - if ( percent < 1 && length ) { - return remaining; - } - - // If this was an empty animation, synthesize a final progress notification - if ( !length ) { - deferred.notifyWith( elem, [ animation, 1, 0 ] ); - } - - // Resolve the animation and report its conclusion - deferred.resolveWith( elem, [ animation ] ); - return false; - }, - animation = deferred.promise( { - elem: elem, - props: jQuery.extend( {}, properties ), - opts: jQuery.extend( true, { - specialEasing: {}, - easing: jQuery.easing._default - }, options ), - originalProperties: properties, - originalOptions: options, - startTime: fxNow || createFxNow(), - duration: options.duration, - tweens: [], - createTween: function( prop, end ) { - var tween = jQuery.Tween( elem, animation.opts, prop, end, - animation.opts.specialEasing[ prop ] || animation.opts.easing ); - animation.tweens.push( tween ); - return tween; - }, - stop: function( gotoEnd ) { - var index = 0, - - // If we are going to the end, we want to run all the tweens - // otherwise we skip this part - length = gotoEnd ? animation.tweens.length : 0; - if ( stopped ) { - return this; - } - stopped = true; - for ( ; index < length; index++ ) { - animation.tweens[ index ].run( 1 ); - } - - // Resolve when we played the last frame; otherwise, reject - if ( gotoEnd ) { - deferred.notifyWith( elem, [ animation, 1, 0 ] ); - deferred.resolveWith( elem, [ animation, gotoEnd ] ); - } else { - deferred.rejectWith( elem, [ animation, gotoEnd ] ); - } - return this; - } - } ), - props = animation.props; - - propFilter( props, animation.opts.specialEasing ); - - for ( ; index < length; index++ ) { - result = Animation.prefilters[ index ].call( animation, elem, props, animation.opts ); - if ( result ) { - if ( isFunction( result.stop ) ) { - jQuery._queueHooks( animation.elem, animation.opts.queue ).stop = - result.stop.bind( result ); - } - return result; - } - } - - jQuery.map( props, createTween, animation ); - - if ( isFunction( animation.opts.start ) ) { - animation.opts.start.call( elem, animation ); - } - - // Attach callbacks from options - animation - .progress( animation.opts.progress ) - .done( animation.opts.done, animation.opts.complete ) - .fail( animation.opts.fail ) - .always( animation.opts.always ); - - jQuery.fx.timer( - jQuery.extend( tick, { - elem: elem, - anim: animation, - queue: animation.opts.queue - } ) - ); - - return animation; -} - -jQuery.Animation = jQuery.extend( Animation, { - - tweeners: { - "*": [ function( prop, value ) { - var tween = this.createTween( prop, value ); - adjustCSS( tween.elem, prop, rcssNum.exec( value ), tween ); - return tween; - } ] - }, - - tweener: function( props, callback ) { - if ( isFunction( props ) ) { - callback = props; - props = [ "*" ]; - } else { - props = props.match( rnothtmlwhite ); - } - - var prop, - index = 0, - length = props.length; - - for ( ; index < length; index++ ) { - prop = props[ index ]; - Animation.tweeners[ prop ] = Animation.tweeners[ prop ] || []; - Animation.tweeners[ prop ].unshift( callback ); - } - }, - - prefilters: [ defaultPrefilter ], - - prefilter: function( callback, prepend ) { - if ( prepend ) { - Animation.prefilters.unshift( callback ); - } else { - Animation.prefilters.push( callback ); - } - } -} ); - -jQuery.speed = function( speed, easing, fn ) { - var opt = speed && typeof speed === "object" ? jQuery.extend( {}, speed ) : { - complete: fn || !fn && easing || - isFunction( speed ) && speed, - duration: speed, - easing: fn && easing || easing && !isFunction( easing ) && easing - }; - - // Go to the end state if fx are off - if ( jQuery.fx.off ) { - opt.duration = 0; - - } else { - if ( typeof opt.duration !== "number" ) { - if ( opt.duration in jQuery.fx.speeds ) { - opt.duration = jQuery.fx.speeds[ opt.duration ]; - - } else { - opt.duration = jQuery.fx.speeds._default; - } - } - } - - // Normalize opt.queue - true/undefined/null -> "fx" - if ( opt.queue == null || opt.queue === true ) { - opt.queue = "fx"; - } - - // Queueing - opt.old = opt.complete; - - opt.complete = function() { - if ( isFunction( opt.old ) ) { - opt.old.call( this ); - } - - if ( opt.queue ) { - jQuery.dequeue( this, opt.queue ); - } - }; - - return opt; -}; - -jQuery.fn.extend( { - fadeTo: function( speed, to, easing, callback ) { - - // Show any hidden elements after setting opacity to 0 - return this.filter( isHiddenWithinTree ).css( "opacity", 0 ).show() - - // Animate to the value specified - .end().animate( { opacity: to }, speed, easing, callback ); - }, - animate: function( prop, speed, easing, callback ) { - var empty = jQuery.isEmptyObject( prop ), - optall = jQuery.speed( speed, easing, callback ), - doAnimation = function() { - - // Operate on a copy of prop so per-property easing won't be lost - var anim = Animation( this, jQuery.extend( {}, prop ), optall ); - - // Empty animations, or finishing resolves immediately - if ( empty || dataPriv.get( this, "finish" ) ) { - anim.stop( true ); - } - }; - doAnimation.finish = doAnimation; - - return empty || optall.queue === false ? - this.each( doAnimation ) : - this.queue( optall.queue, doAnimation ); - }, - stop: function( type, clearQueue, gotoEnd ) { - var stopQueue = function( hooks ) { - var stop = hooks.stop; - delete hooks.stop; - stop( gotoEnd ); - }; - - if ( typeof type !== "string" ) { - gotoEnd = clearQueue; - clearQueue = type; - type = undefined; - } - if ( clearQueue && type !== false ) { - this.queue( type || "fx", [] ); - } - - return this.each( function() { - var dequeue = true, - index = type != null && type + "queueHooks", - timers = jQuery.timers, - data = dataPriv.get( this ); - - if ( index ) { - if ( data[ index ] && data[ index ].stop ) { - stopQueue( data[ index ] ); - } - } else { - for ( index in data ) { - if ( data[ index ] && data[ index ].stop && rrun.test( index ) ) { - stopQueue( data[ index ] ); - } - } - } - - for ( index = timers.length; index--; ) { - if ( timers[ index ].elem === this && - ( type == null || timers[ index ].queue === type ) ) { - - timers[ index ].anim.stop( gotoEnd ); - dequeue = false; - timers.splice( index, 1 ); - } - } - - // Start the next in the queue if the last step wasn't forced. - // Timers currently will call their complete callbacks, which - // will dequeue but only if they were gotoEnd. - if ( dequeue || !gotoEnd ) { - jQuery.dequeue( this, type ); - } - } ); - }, - finish: function( type ) { - if ( type !== false ) { - type = type || "fx"; - } - return this.each( function() { - var index, - data = dataPriv.get( this ), - queue = data[ type + "queue" ], - hooks = data[ type + "queueHooks" ], - timers = jQuery.timers, - length = queue ? queue.length : 0; - - // Enable finishing flag on private data - data.finish = true; - - // Empty the queue first - jQuery.queue( this, type, [] ); - - if ( hooks && hooks.stop ) { - hooks.stop.call( this, true ); - } - - // Look for any active animations, and finish them - for ( index = timers.length; index--; ) { - if ( timers[ index ].elem === this && timers[ index ].queue === type ) { - timers[ index ].anim.stop( true ); - timers.splice( index, 1 ); - } - } - - // Look for any animations in the old queue and finish them - for ( index = 0; index < length; index++ ) { - if ( queue[ index ] && queue[ index ].finish ) { - queue[ index ].finish.call( this ); - } - } - - // Turn off finishing flag - delete data.finish; - } ); - } -} ); - -jQuery.each( [ "toggle", "show", "hide" ], function( i, name ) { - var cssFn = jQuery.fn[ name ]; - jQuery.fn[ name ] = function( speed, easing, callback ) { - return speed == null || typeof speed === "boolean" ? - cssFn.apply( this, arguments ) : - this.animate( genFx( name, true ), speed, easing, callback ); - }; -} ); - -// Generate shortcuts for custom animations -jQuery.each( { - slideDown: genFx( "show" ), - slideUp: genFx( "hide" ), - slideToggle: genFx( "toggle" ), - fadeIn: { opacity: "show" }, - fadeOut: { opacity: "hide" }, - fadeToggle: { opacity: "toggle" } -}, function( name, props ) { - jQuery.fn[ name ] = function( speed, easing, callback ) { - return this.animate( props, speed, easing, callback ); - }; -} ); - -jQuery.timers = []; -jQuery.fx.tick = function() { - var timer, - i = 0, - timers = jQuery.timers; - - fxNow = Date.now(); - - for ( ; i < timers.length; i++ ) { - timer = timers[ i ]; - - // Run the timer and safely remove it when done (allowing for external removal) - if ( !timer() && timers[ i ] === timer ) { - timers.splice( i--, 1 ); - } - } - - if ( !timers.length ) { - jQuery.fx.stop(); - } - fxNow = undefined; -}; - -jQuery.fx.timer = function( timer ) { - jQuery.timers.push( timer ); - jQuery.fx.start(); -}; - -jQuery.fx.interval = 13; -jQuery.fx.start = function() { - if ( inProgress ) { - return; - } - - inProgress = true; - schedule(); -}; - -jQuery.fx.stop = function() { - inProgress = null; -}; - -jQuery.fx.speeds = { - slow: 600, - fast: 200, - - // Default speed - _default: 400 -}; - - -// Based off of the plugin by Clint Helfers, with permission. -// https://web.archive.org/web/20100324014747/http://blindsignals.com/index.php/2009/07/jquery-delay/ -jQuery.fn.delay = function( time, type ) { - time = jQuery.fx ? jQuery.fx.speeds[ time ] || time : time; - type = type || "fx"; - - return this.queue( type, function( next, hooks ) { - var timeout = window.setTimeout( next, time ); - hooks.stop = function() { - window.clearTimeout( timeout ); - }; - } ); -}; - - -( function() { - var input = document.createElement( "input" ), - select = document.createElement( "select" ), - opt = select.appendChild( document.createElement( "option" ) ); - - input.type = "checkbox"; - - // Support: Android <=4.3 only - // Default value for a checkbox should be "on" - support.checkOn = input.value !== ""; - - // Support: IE <=11 only - // Must access selectedIndex to make default options select - support.optSelected = opt.selected; - - // Support: IE <=11 only - // An input loses its value after becoming a radio - input = document.createElement( "input" ); - input.value = "t"; - input.type = "radio"; - support.radioValue = input.value === "t"; -} )(); - - -var boolHook, - attrHandle = jQuery.expr.attrHandle; - -jQuery.fn.extend( { - attr: function( name, value ) { - return access( this, jQuery.attr, name, value, arguments.length > 1 ); - }, - - removeAttr: function( name ) { - return this.each( function() { - jQuery.removeAttr( this, name ); - } ); - } -} ); - -jQuery.extend( { - attr: function( elem, name, value ) { - var ret, hooks, - nType = elem.nodeType; - - // Don't get/set attributes on text, comment and attribute nodes - if ( nType === 3 || nType === 8 || nType === 2 ) { - return; - } - - // Fallback to prop when attributes are not supported - if ( typeof elem.getAttribute === "undefined" ) { - return jQuery.prop( elem, name, value ); - } - - // Attribute hooks are determined by the lowercase version - // Grab necessary hook if one is defined - if ( nType !== 1 || !jQuery.isXMLDoc( elem ) ) { - hooks = jQuery.attrHooks[ name.toLowerCase() ] || - ( jQuery.expr.match.bool.test( name ) ? boolHook : undefined ); - } - - if ( value !== undefined ) { - if ( value === null ) { - jQuery.removeAttr( elem, name ); - return; - } - - if ( hooks && "set" in hooks && - ( ret = hooks.set( elem, value, name ) ) !== undefined ) { - return ret; - } - - elem.setAttribute( name, value + "" ); - return value; - } - - if ( hooks && "get" in hooks && ( ret = hooks.get( elem, name ) ) !== null ) { - return ret; - } - - ret = jQuery.find.attr( elem, name ); - - // Non-existent attributes return null, we normalize to undefined - return ret == null ? undefined : ret; - }, - - attrHooks: { - type: { - set: function( elem, value ) { - if ( !support.radioValue && value === "radio" && - nodeName( elem, "input" ) ) { - var val = elem.value; - elem.setAttribute( "type", value ); - if ( val ) { - elem.value = val; - } - return value; - } - } - } - }, - - removeAttr: function( elem, value ) { - var name, - i = 0, - - // Attribute names can contain non-HTML whitespace characters - // https://html.spec.whatwg.org/multipage/syntax.html#attributes-2 - attrNames = value && value.match( rnothtmlwhite ); - - if ( attrNames && elem.nodeType === 1 ) { - while ( ( name = attrNames[ i++ ] ) ) { - elem.removeAttribute( name ); - } - } - } -} ); - -// Hooks for boolean attributes -boolHook = { - set: function( elem, value, name ) { - if ( value === false ) { - - // Remove boolean attributes when set to false - jQuery.removeAttr( elem, name ); - } else { - elem.setAttribute( name, name ); - } - return name; - } -}; - -jQuery.each( jQuery.expr.match.bool.source.match( /\w+/g ), function( i, name ) { - var getter = attrHandle[ name ] || jQuery.find.attr; - - attrHandle[ name ] = function( elem, name, isXML ) { - var ret, handle, - lowercaseName = name.toLowerCase(); - - if ( !isXML ) { - - // Avoid an infinite loop by temporarily removing this function from the getter - handle = attrHandle[ lowercaseName ]; - attrHandle[ lowercaseName ] = ret; - ret = getter( elem, name, isXML ) != null ? - lowercaseName : - null; - attrHandle[ lowercaseName ] = handle; - } - return ret; - }; -} ); - - - - -var rfocusable = /^(?:input|select|textarea|button)$/i, - rclickable = /^(?:a|area)$/i; - -jQuery.fn.extend( { - prop: function( name, value ) { - return access( this, jQuery.prop, name, value, arguments.length > 1 ); - }, - - removeProp: function( name ) { - return this.each( function() { - delete this[ jQuery.propFix[ name ] || name ]; - } ); - } -} ); - -jQuery.extend( { - prop: function( elem, name, value ) { - var ret, hooks, - nType = elem.nodeType; - - // Don't get/set properties on text, comment and attribute nodes - if ( nType === 3 || nType === 8 || nType === 2 ) { - return; - } - - if ( nType !== 1 || !jQuery.isXMLDoc( elem ) ) { - - // Fix name and attach hooks - name = jQuery.propFix[ name ] || name; - hooks = jQuery.propHooks[ name ]; - } - - if ( value !== undefined ) { - if ( hooks && "set" in hooks && - ( ret = hooks.set( elem, value, name ) ) !== undefined ) { - return ret; - } - - return ( elem[ name ] = value ); - } - - if ( hooks && "get" in hooks && ( ret = hooks.get( elem, name ) ) !== null ) { - return ret; - } - - return elem[ name ]; - }, - - propHooks: { - tabIndex: { - get: function( elem ) { - - // Support: IE <=9 - 11 only - // elem.tabIndex doesn't always return the - // correct value when it hasn't been explicitly set - // https://web.archive.org/web/20141116233347/http://fluidproject.org/blog/2008/01/09/getting-setting-and-removing-tabindex-values-with-javascript/ - // Use proper attribute retrieval(#12072) - var tabindex = jQuery.find.attr( elem, "tabindex" ); - - if ( tabindex ) { - return parseInt( tabindex, 10 ); - } - - if ( - rfocusable.test( elem.nodeName ) || - rclickable.test( elem.nodeName ) && - elem.href - ) { - return 0; - } - - return -1; - } - } - }, - - propFix: { - "for": "htmlFor", - "class": "className" - } -} ); - -// Support: IE <=11 only -// Accessing the selectedIndex property -// forces the browser to respect setting selected -// on the option -// The getter ensures a default option is selected -// when in an optgroup -// eslint rule "no-unused-expressions" is disabled for this code -// since it considers such accessions noop -if ( !support.optSelected ) { - jQuery.propHooks.selected = { - get: function( elem ) { - - /* eslint no-unused-expressions: "off" */ - - var parent = elem.parentNode; - if ( parent && parent.parentNode ) { - parent.parentNode.selectedIndex; - } - return null; - }, - set: function( elem ) { - - /* eslint no-unused-expressions: "off" */ - - var parent = elem.parentNode; - if ( parent ) { - parent.selectedIndex; - - if ( parent.parentNode ) { - parent.parentNode.selectedIndex; - } - } - } - }; -} - -jQuery.each( [ - "tabIndex", - "readOnly", - "maxLength", - "cellSpacing", - "cellPadding", - "rowSpan", - "colSpan", - "useMap", - "frameBorder", - "contentEditable" -], function() { - jQuery.propFix[ this.toLowerCase() ] = this; -} ); - - - - - // Strip and collapse whitespace according to HTML spec - // https://infra.spec.whatwg.org/#strip-and-collapse-ascii-whitespace - function stripAndCollapse( value ) { - var tokens = value.match( rnothtmlwhite ) || []; - return tokens.join( " " ); - } - - -function getClass( elem ) { - return elem.getAttribute && elem.getAttribute( "class" ) || ""; -} - -function classesToArray( value ) { - if ( Array.isArray( value ) ) { - return value; - } - if ( typeof value === "string" ) { - return value.match( rnothtmlwhite ) || []; - } - return []; -} - -jQuery.fn.extend( { - addClass: function( value ) { - var classes, elem, cur, curValue, clazz, j, finalValue, - i = 0; - - if ( isFunction( value ) ) { - return this.each( function( j ) { - jQuery( this ).addClass( value.call( this, j, getClass( this ) ) ); - } ); - } - - classes = classesToArray( value ); - - if ( classes.length ) { - while ( ( elem = this[ i++ ] ) ) { - curValue = getClass( elem ); - cur = elem.nodeType === 1 && ( " " + stripAndCollapse( curValue ) + " " ); - - if ( cur ) { - j = 0; - while ( ( clazz = classes[ j++ ] ) ) { - if ( cur.indexOf( " " + clazz + " " ) < 0 ) { - cur += clazz + " "; - } - } - - // Only assign if different to avoid unneeded rendering. - finalValue = stripAndCollapse( cur ); - if ( curValue !== finalValue ) { - elem.setAttribute( "class", finalValue ); - } - } - } - } - - return this; - }, - - removeClass: function( value ) { - var classes, elem, cur, curValue, clazz, j, finalValue, - i = 0; - - if ( isFunction( value ) ) { - return this.each( function( j ) { - jQuery( this ).removeClass( value.call( this, j, getClass( this ) ) ); - } ); - } - - if ( !arguments.length ) { - return this.attr( "class", "" ); - } - - classes = classesToArray( value ); - - if ( classes.length ) { - while ( ( elem = this[ i++ ] ) ) { - curValue = getClass( elem ); - - // This expression is here for better compressibility (see addClass) - cur = elem.nodeType === 1 && ( " " + stripAndCollapse( curValue ) + " " ); - - if ( cur ) { - j = 0; - while ( ( clazz = classes[ j++ ] ) ) { - - // Remove *all* instances - while ( cur.indexOf( " " + clazz + " " ) > -1 ) { - cur = cur.replace( " " + clazz + " ", " " ); - } - } - - // Only assign if different to avoid unneeded rendering. - finalValue = stripAndCollapse( cur ); - if ( curValue !== finalValue ) { - elem.setAttribute( "class", finalValue ); - } - } - } - } - - return this; - }, - - toggleClass: function( value, stateVal ) { - var type = typeof value, - isValidValue = type === "string" || Array.isArray( value ); - - if ( typeof stateVal === "boolean" && isValidValue ) { - return stateVal ? this.addClass( value ) : this.removeClass( value ); - } - - if ( isFunction( value ) ) { - return this.each( function( i ) { - jQuery( this ).toggleClass( - value.call( this, i, getClass( this ), stateVal ), - stateVal - ); - } ); - } - - return this.each( function() { - var className, i, self, classNames; - - if ( isValidValue ) { - - // Toggle individual class names - i = 0; - self = jQuery( this ); - classNames = classesToArray( value ); - - while ( ( className = classNames[ i++ ] ) ) { - - // Check each className given, space separated list - if ( self.hasClass( className ) ) { - self.removeClass( className ); - } else { - self.addClass( className ); - } - } - - // Toggle whole class name - } else if ( value === undefined || type === "boolean" ) { - className = getClass( this ); - if ( className ) { - - // Store className if set - dataPriv.set( this, "__className__", className ); - } - - // If the element has a class name or if we're passed `false`, - // then remove the whole classname (if there was one, the above saved it). - // Otherwise bring back whatever was previously saved (if anything), - // falling back to the empty string if nothing was stored. - if ( this.setAttribute ) { - this.setAttribute( "class", - className || value === false ? - "" : - dataPriv.get( this, "__className__" ) || "" - ); - } - } - } ); - }, - - hasClass: function( selector ) { - var className, elem, - i = 0; - - className = " " + selector + " "; - while ( ( elem = this[ i++ ] ) ) { - if ( elem.nodeType === 1 && - ( " " + stripAndCollapse( getClass( elem ) ) + " " ).indexOf( className ) > -1 ) { - return true; - } - } - - return false; - } -} ); - - - - -var rreturn = /\r/g; - -jQuery.fn.extend( { - val: function( value ) { - var hooks, ret, valueIsFunction, - elem = this[ 0 ]; - - if ( !arguments.length ) { - if ( elem ) { - hooks = jQuery.valHooks[ elem.type ] || - jQuery.valHooks[ elem.nodeName.toLowerCase() ]; - - if ( hooks && - "get" in hooks && - ( ret = hooks.get( elem, "value" ) ) !== undefined - ) { - return ret; - } - - ret = elem.value; - - // Handle most common string cases - if ( typeof ret === "string" ) { - return ret.replace( rreturn, "" ); - } - - // Handle cases where value is null/undef or number - return ret == null ? "" : ret; - } - - return; - } - - valueIsFunction = isFunction( value ); - - return this.each( function( i ) { - var val; - - if ( this.nodeType !== 1 ) { - return; - } - - if ( valueIsFunction ) { - val = value.call( this, i, jQuery( this ).val() ); - } else { - val = value; - } - - // Treat null/undefined as ""; convert numbers to string - if ( val == null ) { - val = ""; - - } else if ( typeof val === "number" ) { - val += ""; - - } else if ( Array.isArray( val ) ) { - val = jQuery.map( val, function( value ) { - return value == null ? "" : value + ""; - } ); - } - - hooks = jQuery.valHooks[ this.type ] || jQuery.valHooks[ this.nodeName.toLowerCase() ]; - - // If set returns undefined, fall back to normal setting - if ( !hooks || !( "set" in hooks ) || hooks.set( this, val, "value" ) === undefined ) { - this.value = val; - } - } ); - } -} ); - -jQuery.extend( { - valHooks: { - option: { - get: function( elem ) { - - var val = jQuery.find.attr( elem, "value" ); - return val != null ? - val : - - // Support: IE <=10 - 11 only - // option.text throws exceptions (#14686, #14858) - // Strip and collapse whitespace - // https://html.spec.whatwg.org/#strip-and-collapse-whitespace - stripAndCollapse( jQuery.text( elem ) ); - } - }, - select: { - get: function( elem ) { - var value, option, i, - options = elem.options, - index = elem.selectedIndex, - one = elem.type === "select-one", - values = one ? null : [], - max = one ? index + 1 : options.length; - - if ( index < 0 ) { - i = max; - - } else { - i = one ? index : 0; - } - - // Loop through all the selected options - for ( ; i < max; i++ ) { - option = options[ i ]; - - // Support: IE <=9 only - // IE8-9 doesn't update selected after form reset (#2551) - if ( ( option.selected || i === index ) && - - // Don't return options that are disabled or in a disabled optgroup - !option.disabled && - ( !option.parentNode.disabled || - !nodeName( option.parentNode, "optgroup" ) ) ) { - - // Get the specific value for the option - value = jQuery( option ).val(); - - // We don't need an array for one selects - if ( one ) { - return value; - } - - // Multi-Selects return an array - values.push( value ); - } - } - - return values; - }, - - set: function( elem, value ) { - var optionSet, option, - options = elem.options, - values = jQuery.makeArray( value ), - i = options.length; - - while ( i-- ) { - option = options[ i ]; - - /* eslint-disable no-cond-assign */ - - if ( option.selected = - jQuery.inArray( jQuery.valHooks.option.get( option ), values ) > -1 - ) { - optionSet = true; - } - - /* eslint-enable no-cond-assign */ - } - - // Force browsers to behave consistently when non-matching value is set - if ( !optionSet ) { - elem.selectedIndex = -1; - } - return values; - } - } - } -} ); - -// Radios and checkboxes getter/setter -jQuery.each( [ "radio", "checkbox" ], function() { - jQuery.valHooks[ this ] = { - set: function( elem, value ) { - if ( Array.isArray( value ) ) { - return ( elem.checked = jQuery.inArray( jQuery( elem ).val(), value ) > -1 ); - } - } - }; - if ( !support.checkOn ) { - jQuery.valHooks[ this ].get = function( elem ) { - return elem.getAttribute( "value" ) === null ? "on" : elem.value; - }; - } -} ); - - - - -// Return jQuery for attributes-only inclusion - - -support.focusin = "onfocusin" in window; - - -var rfocusMorph = /^(?:focusinfocus|focusoutblur)$/, - stopPropagationCallback = function( e ) { - e.stopPropagation(); - }; - -jQuery.extend( jQuery.event, { - - trigger: function( event, data, elem, onlyHandlers ) { - - var i, cur, tmp, bubbleType, ontype, handle, special, lastElement, - eventPath = [ elem || document ], - type = hasOwn.call( event, "type" ) ? event.type : event, - namespaces = hasOwn.call( event, "namespace" ) ? event.namespace.split( "." ) : []; - - cur = lastElement = tmp = elem = elem || document; - - // Don't do events on text and comment nodes - if ( elem.nodeType === 3 || elem.nodeType === 8 ) { - return; - } - - // focus/blur morphs to focusin/out; ensure we're not firing them right now - if ( rfocusMorph.test( type + jQuery.event.triggered ) ) { - return; - } - - if ( type.indexOf( "." ) > -1 ) { - - // Namespaced trigger; create a regexp to match event type in handle() - namespaces = type.split( "." ); - type = namespaces.shift(); - namespaces.sort(); - } - ontype = type.indexOf( ":" ) < 0 && "on" + type; - - // Caller can pass in a jQuery.Event object, Object, or just an event type string - event = event[ jQuery.expando ] ? - event : - new jQuery.Event( type, typeof event === "object" && event ); - - // Trigger bitmask: & 1 for native handlers; & 2 for jQuery (always true) - event.isTrigger = onlyHandlers ? 2 : 3; - event.namespace = namespaces.join( "." ); - event.rnamespace = event.namespace ? - new RegExp( "(^|\\.)" + namespaces.join( "\\.(?:.*\\.|)" ) + "(\\.|$)" ) : - null; - - // Clean up the event in case it is being reused - event.result = undefined; - if ( !event.target ) { - event.target = elem; - } - - // Clone any incoming data and prepend the event, creating the handler arg list - data = data == null ? - [ event ] : - jQuery.makeArray( data, [ event ] ); - - // Allow special events to draw outside the lines - special = jQuery.event.special[ type ] || {}; - if ( !onlyHandlers && special.trigger && special.trigger.apply( elem, data ) === false ) { - return; - } - - // Determine event propagation path in advance, per W3C events spec (#9951) - // Bubble up to document, then to window; watch for a global ownerDocument var (#9724) - if ( !onlyHandlers && !special.noBubble && !isWindow( elem ) ) { - - bubbleType = special.delegateType || type; - if ( !rfocusMorph.test( bubbleType + type ) ) { - cur = cur.parentNode; - } - for ( ; cur; cur = cur.parentNode ) { - eventPath.push( cur ); - tmp = cur; - } - - // Only add window if we got to document (e.g., not plain obj or detached DOM) - if ( tmp === ( elem.ownerDocument || document ) ) { - eventPath.push( tmp.defaultView || tmp.parentWindow || window ); - } - } - - // Fire handlers on the event path - i = 0; - while ( ( cur = eventPath[ i++ ] ) && !event.isPropagationStopped() ) { - lastElement = cur; - event.type = i > 1 ? - bubbleType : - special.bindType || type; - - // jQuery handler - handle = ( dataPriv.get( cur, "events" ) || {} )[ event.type ] && - dataPriv.get( cur, "handle" ); - if ( handle ) { - handle.apply( cur, data ); - } - - // Native handler - handle = ontype && cur[ ontype ]; - if ( handle && handle.apply && acceptData( cur ) ) { - event.result = handle.apply( cur, data ); - if ( event.result === false ) { - event.preventDefault(); - } - } - } - event.type = type; - - // If nobody prevented the default action, do it now - if ( !onlyHandlers && !event.isDefaultPrevented() ) { - - if ( ( !special._default || - special._default.apply( eventPath.pop(), data ) === false ) && - acceptData( elem ) ) { - - // Call a native DOM method on the target with the same name as the event. - // Don't do default actions on window, that's where global variables be (#6170) - if ( ontype && isFunction( elem[ type ] ) && !isWindow( elem ) ) { - - // Don't re-trigger an onFOO event when we call its FOO() method - tmp = elem[ ontype ]; - - if ( tmp ) { - elem[ ontype ] = null; - } - - // Prevent re-triggering of the same event, since we already bubbled it above - jQuery.event.triggered = type; - - if ( event.isPropagationStopped() ) { - lastElement.addEventListener( type, stopPropagationCallback ); - } - - elem[ type ](); - - if ( event.isPropagationStopped() ) { - lastElement.removeEventListener( type, stopPropagationCallback ); - } - - jQuery.event.triggered = undefined; - - if ( tmp ) { - elem[ ontype ] = tmp; - } - } - } - } - - return event.result; - }, - - // Piggyback on a donor event to simulate a different one - // Used only for `focus(in | out)` events - simulate: function( type, elem, event ) { - var e = jQuery.extend( - new jQuery.Event(), - event, - { - type: type, - isSimulated: true - } - ); - - jQuery.event.trigger( e, null, elem ); - } - -} ); - -jQuery.fn.extend( { - - trigger: function( type, data ) { - return this.each( function() { - jQuery.event.trigger( type, data, this ); - } ); - }, - triggerHandler: function( type, data ) { - var elem = this[ 0 ]; - if ( elem ) { - return jQuery.event.trigger( type, data, elem, true ); - } - } -} ); - - -// Support: Firefox <=44 -// Firefox doesn't have focus(in | out) events -// Related ticket - https://bugzilla.mozilla.org/show_bug.cgi?id=687787 -// -// Support: Chrome <=48 - 49, Safari <=9.0 - 9.1 -// focus(in | out) events fire after focus & blur events, -// which is spec violation - http://www.w3.org/TR/DOM-Level-3-Events/#events-focusevent-event-order -// Related ticket - https://bugs.chromium.org/p/chromium/issues/detail?id=449857 -if ( !support.focusin ) { - jQuery.each( { focus: "focusin", blur: "focusout" }, function( orig, fix ) { - - // Attach a single capturing handler on the document while someone wants focusin/focusout - var handler = function( event ) { - jQuery.event.simulate( fix, event.target, jQuery.event.fix( event ) ); - }; - - jQuery.event.special[ fix ] = { - setup: function() { - var doc = this.ownerDocument || this, - attaches = dataPriv.access( doc, fix ); - - if ( !attaches ) { - doc.addEventListener( orig, handler, true ); - } - dataPriv.access( doc, fix, ( attaches || 0 ) + 1 ); - }, - teardown: function() { - var doc = this.ownerDocument || this, - attaches = dataPriv.access( doc, fix ) - 1; - - if ( !attaches ) { - doc.removeEventListener( orig, handler, true ); - dataPriv.remove( doc, fix ); - - } else { - dataPriv.access( doc, fix, attaches ); - } - } - }; - } ); -} -var location = window.location; - -var nonce = Date.now(); - -var rquery = ( /\?/ ); - - - -// Cross-browser xml parsing -jQuery.parseXML = function( data ) { - var xml; - if ( !data || typeof data !== "string" ) { - return null; - } - - // Support: IE 9 - 11 only - // IE throws on parseFromString with invalid input. - try { - xml = ( new window.DOMParser() ).parseFromString( data, "text/xml" ); - } catch ( e ) { - xml = undefined; - } - - if ( !xml || xml.getElementsByTagName( "parsererror" ).length ) { - jQuery.error( "Invalid XML: " + data ); - } - return xml; -}; - - -var - rbracket = /\[\]$/, - rCRLF = /\r?\n/g, - rsubmitterTypes = /^(?:submit|button|image|reset|file)$/i, - rsubmittable = /^(?:input|select|textarea|keygen)/i; - -function buildParams( prefix, obj, traditional, add ) { - var name; - - if ( Array.isArray( obj ) ) { - - // Serialize array item. - jQuery.each( obj, function( i, v ) { - if ( traditional || rbracket.test( prefix ) ) { - - // Treat each array item as a scalar. - add( prefix, v ); - - } else { - - // Item is non-scalar (array or object), encode its numeric index. - buildParams( - prefix + "[" + ( typeof v === "object" && v != null ? i : "" ) + "]", - v, - traditional, - add - ); - } - } ); - - } else if ( !traditional && toType( obj ) === "object" ) { - - // Serialize object item. - for ( name in obj ) { - buildParams( prefix + "[" + name + "]", obj[ name ], traditional, add ); - } - - } else { - - // Serialize scalar item. - add( prefix, obj ); - } -} - -// Serialize an array of form elements or a set of -// key/values into a query string -jQuery.param = function( a, traditional ) { - var prefix, - s = [], - add = function( key, valueOrFunction ) { - - // If value is a function, invoke it and use its return value - var value = isFunction( valueOrFunction ) ? - valueOrFunction() : - valueOrFunction; - - s[ s.length ] = encodeURIComponent( key ) + "=" + - encodeURIComponent( value == null ? "" : value ); - }; - - if ( a == null ) { - return ""; - } - - // If an array was passed in, assume that it is an array of form elements. - if ( Array.isArray( a ) || ( a.jquery && !jQuery.isPlainObject( a ) ) ) { - - // Serialize the form elements - jQuery.each( a, function() { - add( this.name, this.value ); - } ); - - } else { - - // If traditional, encode the "old" way (the way 1.3.2 or older - // did it), otherwise encode params recursively. - for ( prefix in a ) { - buildParams( prefix, a[ prefix ], traditional, add ); - } - } - - // Return the resulting serialization - return s.join( "&" ); -}; - -jQuery.fn.extend( { - serialize: function() { - return jQuery.param( this.serializeArray() ); - }, - serializeArray: function() { - return this.map( function() { - - // Can add propHook for "elements" to filter or add form elements - var elements = jQuery.prop( this, "elements" ); - return elements ? jQuery.makeArray( elements ) : this; - } ) - .filter( function() { - var type = this.type; - - // Use .is( ":disabled" ) so that fieldset[disabled] works - return this.name && !jQuery( this ).is( ":disabled" ) && - rsubmittable.test( this.nodeName ) && !rsubmitterTypes.test( type ) && - ( this.checked || !rcheckableType.test( type ) ); - } ) - .map( function( i, elem ) { - var val = jQuery( this ).val(); - - if ( val == null ) { - return null; - } - - if ( Array.isArray( val ) ) { - return jQuery.map( val, function( val ) { - return { name: elem.name, value: val.replace( rCRLF, "\r\n" ) }; - } ); - } - - return { name: elem.name, value: val.replace( rCRLF, "\r\n" ) }; - } ).get(); - } -} ); - - -var - r20 = /%20/g, - rhash = /#.*$/, - rantiCache = /([?&])_=[^&]*/, - rheaders = /^(.*?):[ \t]*([^\r\n]*)$/mg, - - // #7653, #8125, #8152: local protocol detection - rlocalProtocol = /^(?:about|app|app-storage|.+-extension|file|res|widget):$/, - rnoContent = /^(?:GET|HEAD)$/, - rprotocol = /^\/\//, - - /* Prefilters - * 1) They are useful to introduce custom dataTypes (see ajax/jsonp.js for an example) - * 2) These are called: - * - BEFORE asking for a transport - * - AFTER param serialization (s.data is a string if s.processData is true) - * 3) key is the dataType - * 4) the catchall symbol "*" can be used - * 5) execution will start with transport dataType and THEN continue down to "*" if needed - */ - prefilters = {}, - - /* Transports bindings - * 1) key is the dataType - * 2) the catchall symbol "*" can be used - * 3) selection will start with transport dataType and THEN go to "*" if needed - */ - transports = {}, - - // Avoid comment-prolog char sequence (#10098); must appease lint and evade compression - allTypes = "*/".concat( "*" ), - - // Anchor tag for parsing the document origin - originAnchor = document.createElement( "a" ); - originAnchor.href = location.href; - -// Base "constructor" for jQuery.ajaxPrefilter and jQuery.ajaxTransport -function addToPrefiltersOrTransports( structure ) { - - // dataTypeExpression is optional and defaults to "*" - return function( dataTypeExpression, func ) { - - if ( typeof dataTypeExpression !== "string" ) { - func = dataTypeExpression; - dataTypeExpression = "*"; - } - - var dataType, - i = 0, - dataTypes = dataTypeExpression.toLowerCase().match( rnothtmlwhite ) || []; - - if ( isFunction( func ) ) { - - // For each dataType in the dataTypeExpression - while ( ( dataType = dataTypes[ i++ ] ) ) { - - // Prepend if requested - if ( dataType[ 0 ] === "+" ) { - dataType = dataType.slice( 1 ) || "*"; - ( structure[ dataType ] = structure[ dataType ] || [] ).unshift( func ); - - // Otherwise append - } else { - ( structure[ dataType ] = structure[ dataType ] || [] ).push( func ); - } - } - } - }; -} - -// Base inspection function for prefilters and transports -function inspectPrefiltersOrTransports( structure, options, originalOptions, jqXHR ) { - - var inspected = {}, - seekingTransport = ( structure === transports ); - - function inspect( dataType ) { - var selected; - inspected[ dataType ] = true; - jQuery.each( structure[ dataType ] || [], function( _, prefilterOrFactory ) { - var dataTypeOrTransport = prefilterOrFactory( options, originalOptions, jqXHR ); - if ( typeof dataTypeOrTransport === "string" && - !seekingTransport && !inspected[ dataTypeOrTransport ] ) { - - options.dataTypes.unshift( dataTypeOrTransport ); - inspect( dataTypeOrTransport ); - return false; - } else if ( seekingTransport ) { - return !( selected = dataTypeOrTransport ); - } - } ); - return selected; - } - - return inspect( options.dataTypes[ 0 ] ) || !inspected[ "*" ] && inspect( "*" ); -} - -// A special extend for ajax options -// that takes "flat" options (not to be deep extended) -// Fixes #9887 -function ajaxExtend( target, src ) { - var key, deep, - flatOptions = jQuery.ajaxSettings.flatOptions || {}; - - for ( key in src ) { - if ( src[ key ] !== undefined ) { - ( flatOptions[ key ] ? target : ( deep || ( deep = {} ) ) )[ key ] = src[ key ]; - } - } - if ( deep ) { - jQuery.extend( true, target, deep ); - } - - return target; -} - -/* Handles responses to an ajax request: - * - finds the right dataType (mediates between content-type and expected dataType) - * - returns the corresponding response - */ -function ajaxHandleResponses( s, jqXHR, responses ) { - - var ct, type, finalDataType, firstDataType, - contents = s.contents, - dataTypes = s.dataTypes; - - // Remove auto dataType and get content-type in the process - while ( dataTypes[ 0 ] === "*" ) { - dataTypes.shift(); - if ( ct === undefined ) { - ct = s.mimeType || jqXHR.getResponseHeader( "Content-Type" ); - } - } - - // Check if we're dealing with a known content-type - if ( ct ) { - for ( type in contents ) { - if ( contents[ type ] && contents[ type ].test( ct ) ) { - dataTypes.unshift( type ); - break; - } - } - } - - // Check to see if we have a response for the expected dataType - if ( dataTypes[ 0 ] in responses ) { - finalDataType = dataTypes[ 0 ]; - } else { - - // Try convertible dataTypes - for ( type in responses ) { - if ( !dataTypes[ 0 ] || s.converters[ type + " " + dataTypes[ 0 ] ] ) { - finalDataType = type; - break; - } - if ( !firstDataType ) { - firstDataType = type; - } - } - - // Or just use first one - finalDataType = finalDataType || firstDataType; - } - - // If we found a dataType - // We add the dataType to the list if needed - // and return the corresponding response - if ( finalDataType ) { - if ( finalDataType !== dataTypes[ 0 ] ) { - dataTypes.unshift( finalDataType ); - } - return responses[ finalDataType ]; - } -} - -/* Chain conversions given the request and the original response - * Also sets the responseXXX fields on the jqXHR instance - */ -function ajaxConvert( s, response, jqXHR, isSuccess ) { - var conv2, current, conv, tmp, prev, - converters = {}, - - // Work with a copy of dataTypes in case we need to modify it for conversion - dataTypes = s.dataTypes.slice(); - - // Create converters map with lowercased keys - if ( dataTypes[ 1 ] ) { - for ( conv in s.converters ) { - converters[ conv.toLowerCase() ] = s.converters[ conv ]; - } - } - - current = dataTypes.shift(); - - // Convert to each sequential dataType - while ( current ) { - - if ( s.responseFields[ current ] ) { - jqXHR[ s.responseFields[ current ] ] = response; - } - - // Apply the dataFilter if provided - if ( !prev && isSuccess && s.dataFilter ) { - response = s.dataFilter( response, s.dataType ); - } - - prev = current; - current = dataTypes.shift(); - - if ( current ) { - - // There's only work to do if current dataType is non-auto - if ( current === "*" ) { - - current = prev; - - // Convert response if prev dataType is non-auto and differs from current - } else if ( prev !== "*" && prev !== current ) { - - // Seek a direct converter - conv = converters[ prev + " " + current ] || converters[ "* " + current ]; - - // If none found, seek a pair - if ( !conv ) { - for ( conv2 in converters ) { - - // If conv2 outputs current - tmp = conv2.split( " " ); - if ( tmp[ 1 ] === current ) { - - // If prev can be converted to accepted input - conv = converters[ prev + " " + tmp[ 0 ] ] || - converters[ "* " + tmp[ 0 ] ]; - if ( conv ) { - - // Condense equivalence converters - if ( conv === true ) { - conv = converters[ conv2 ]; - - // Otherwise, insert the intermediate dataType - } else if ( converters[ conv2 ] !== true ) { - current = tmp[ 0 ]; - dataTypes.unshift( tmp[ 1 ] ); - } - break; - } - } - } - } - - // Apply converter (if not an equivalence) - if ( conv !== true ) { - - // Unless errors are allowed to bubble, catch and return them - if ( conv && s.throws ) { - response = conv( response ); - } else { - try { - response = conv( response ); - } catch ( e ) { - return { - state: "parsererror", - error: conv ? e : "No conversion from " + prev + " to " + current - }; - } - } - } - } - } - } - - return { state: "success", data: response }; -} - -jQuery.extend( { - - // Counter for holding the number of active queries - active: 0, - - // Last-Modified header cache for next request - lastModified: {}, - etag: {}, - - ajaxSettings: { - url: location.href, - type: "GET", - isLocal: rlocalProtocol.test( location.protocol ), - global: true, - processData: true, - async: true, - contentType: "application/x-www-form-urlencoded; charset=UTF-8", - - /* - timeout: 0, - data: null, - dataType: null, - username: null, - password: null, - cache: null, - throws: false, - traditional: false, - headers: {}, - */ - - accepts: { - "*": allTypes, - text: "text/plain", - html: "text/html", - xml: "application/xml, text/xml", - json: "application/json, text/javascript" - }, - - contents: { - xml: /\bxml\b/, - html: /\bhtml/, - json: /\bjson\b/ - }, - - responseFields: { - xml: "responseXML", - text: "responseText", - json: "responseJSON" - }, - - // Data converters - // Keys separate source (or catchall "*") and destination types with a single space - converters: { - - // Convert anything to text - "* text": String, - - // Text to html (true = no transformation) - "text html": true, - - // Evaluate text as a json expression - "text json": JSON.parse, - - // Parse text as xml - "text xml": jQuery.parseXML - }, - - // For options that shouldn't be deep extended: - // you can add your own custom options here if - // and when you create one that shouldn't be - // deep extended (see ajaxExtend) - flatOptions: { - url: true, - context: true - } - }, - - // Creates a full fledged settings object into target - // with both ajaxSettings and settings fields. - // If target is omitted, writes into ajaxSettings. - ajaxSetup: function( target, settings ) { - return settings ? - - // Building a settings object - ajaxExtend( ajaxExtend( target, jQuery.ajaxSettings ), settings ) : - - // Extending ajaxSettings - ajaxExtend( jQuery.ajaxSettings, target ); - }, - - ajaxPrefilter: addToPrefiltersOrTransports( prefilters ), - ajaxTransport: addToPrefiltersOrTransports( transports ), - - // Main method - ajax: function( url, options ) { - - // If url is an object, simulate pre-1.5 signature - if ( typeof url === "object" ) { - options = url; - url = undefined; - } - - // Force options to be an object - options = options || {}; - - var transport, - - // URL without anti-cache param - cacheURL, - - // Response headers - responseHeadersString, - responseHeaders, - - // timeout handle - timeoutTimer, - - // Url cleanup var - urlAnchor, - - // Request state (becomes false upon send and true upon completion) - completed, - - // To know if global events are to be dispatched - fireGlobals, - - // Loop variable - i, - - // uncached part of the url - uncached, - - // Create the final options object - s = jQuery.ajaxSetup( {}, options ), - - // Callbacks context - callbackContext = s.context || s, - - // Context for global events is callbackContext if it is a DOM node or jQuery collection - globalEventContext = s.context && - ( callbackContext.nodeType || callbackContext.jquery ) ? - jQuery( callbackContext ) : - jQuery.event, - - // Deferreds - deferred = jQuery.Deferred(), - completeDeferred = jQuery.Callbacks( "once memory" ), - - // Status-dependent callbacks - statusCode = s.statusCode || {}, - - // Headers (they are sent all at once) - requestHeaders = {}, - requestHeadersNames = {}, - - // Default abort message - strAbort = "canceled", - - // Fake xhr - jqXHR = { - readyState: 0, - - // Builds headers hashtable if needed - getResponseHeader: function( key ) { - var match; - if ( completed ) { - if ( !responseHeaders ) { - responseHeaders = {}; - while ( ( match = rheaders.exec( responseHeadersString ) ) ) { - responseHeaders[ match[ 1 ].toLowerCase() + " " ] = - ( responseHeaders[ match[ 1 ].toLowerCase() + " " ] || [] ) - .concat( match[ 2 ] ); - } - } - match = responseHeaders[ key.toLowerCase() + " " ]; - } - return match == null ? null : match.join( ", " ); - }, - - // Raw string - getAllResponseHeaders: function() { - return completed ? responseHeadersString : null; - }, - - // Caches the header - setRequestHeader: function( name, value ) { - if ( completed == null ) { - name = requestHeadersNames[ name.toLowerCase() ] = - requestHeadersNames[ name.toLowerCase() ] || name; - requestHeaders[ name ] = value; - } - return this; - }, - - // Overrides response content-type header - overrideMimeType: function( type ) { - if ( completed == null ) { - s.mimeType = type; - } - return this; - }, - - // Status-dependent callbacks - statusCode: function( map ) { - var code; - if ( map ) { - if ( completed ) { - - // Execute the appropriate callbacks - jqXHR.always( map[ jqXHR.status ] ); - } else { - - // Lazy-add the new callbacks in a way that preserves old ones - for ( code in map ) { - statusCode[ code ] = [ statusCode[ code ], map[ code ] ]; - } - } - } - return this; - }, - - // Cancel the request - abort: function( statusText ) { - var finalText = statusText || strAbort; - if ( transport ) { - transport.abort( finalText ); - } - done( 0, finalText ); - return this; - } - }; - - // Attach deferreds - deferred.promise( jqXHR ); - - // Add protocol if not provided (prefilters might expect it) - // Handle falsy url in the settings object (#10093: consistency with old signature) - // We also use the url parameter if available - s.url = ( ( url || s.url || location.href ) + "" ) - .replace( rprotocol, location.protocol + "//" ); - - // Alias method option to type as per ticket #12004 - s.type = options.method || options.type || s.method || s.type; - - // Extract dataTypes list - s.dataTypes = ( s.dataType || "*" ).toLowerCase().match( rnothtmlwhite ) || [ "" ]; - - // A cross-domain request is in order when the origin doesn't match the current origin. - if ( s.crossDomain == null ) { - urlAnchor = document.createElement( "a" ); - - // Support: IE <=8 - 11, Edge 12 - 15 - // IE throws exception on accessing the href property if url is malformed, - // e.g. http://example.com:80x/ - try { - urlAnchor.href = s.url; - - // Support: IE <=8 - 11 only - // Anchor's host property isn't correctly set when s.url is relative - urlAnchor.href = urlAnchor.href; - s.crossDomain = originAnchor.protocol + "//" + originAnchor.host !== - urlAnchor.protocol + "//" + urlAnchor.host; - } catch ( e ) { - - // If there is an error parsing the URL, assume it is crossDomain, - // it can be rejected by the transport if it is invalid - s.crossDomain = true; - } - } - - // Convert data if not already a string - if ( s.data && s.processData && typeof s.data !== "string" ) { - s.data = jQuery.param( s.data, s.traditional ); - } - - // Apply prefilters - inspectPrefiltersOrTransports( prefilters, s, options, jqXHR ); - - // If request was aborted inside a prefilter, stop there - if ( completed ) { - return jqXHR; - } - - // We can fire global events as of now if asked to - // Don't fire events if jQuery.event is undefined in an AMD-usage scenario (#15118) - fireGlobals = jQuery.event && s.global; - - // Watch for a new set of requests - if ( fireGlobals && jQuery.active++ === 0 ) { - jQuery.event.trigger( "ajaxStart" ); - } - - // Uppercase the type - s.type = s.type.toUpperCase(); - - // Determine if request has content - s.hasContent = !rnoContent.test( s.type ); - - // Save the URL in case we're toying with the If-Modified-Since - // and/or If-None-Match header later on - // Remove hash to simplify url manipulation - cacheURL = s.url.replace( rhash, "" ); - - // More options handling for requests with no content - if ( !s.hasContent ) { - - // Remember the hash so we can put it back - uncached = s.url.slice( cacheURL.length ); - - // If data is available and should be processed, append data to url - if ( s.data && ( s.processData || typeof s.data === "string" ) ) { - cacheURL += ( rquery.test( cacheURL ) ? "&" : "?" ) + s.data; - - // #9682: remove data so that it's not used in an eventual retry - delete s.data; - } - - // Add or update anti-cache param if needed - if ( s.cache === false ) { - cacheURL = cacheURL.replace( rantiCache, "$1" ); - uncached = ( rquery.test( cacheURL ) ? "&" : "?" ) + "_=" + ( nonce++ ) + uncached; - } - - // Put hash and anti-cache on the URL that will be requested (gh-1732) - s.url = cacheURL + uncached; - - // Change '%20' to '+' if this is encoded form body content (gh-2658) - } else if ( s.data && s.processData && - ( s.contentType || "" ).indexOf( "application/x-www-form-urlencoded" ) === 0 ) { - s.data = s.data.replace( r20, "+" ); - } - - // Set the If-Modified-Since and/or If-None-Match header, if in ifModified mode. - if ( s.ifModified ) { - if ( jQuery.lastModified[ cacheURL ] ) { - jqXHR.setRequestHeader( "If-Modified-Since", jQuery.lastModified[ cacheURL ] ); - } - if ( jQuery.etag[ cacheURL ] ) { - jqXHR.setRequestHeader( "If-None-Match", jQuery.etag[ cacheURL ] ); - } - } - - // Set the correct header, if data is being sent - if ( s.data && s.hasContent && s.contentType !== false || options.contentType ) { - jqXHR.setRequestHeader( "Content-Type", s.contentType ); - } - - // Set the Accepts header for the server, depending on the dataType - jqXHR.setRequestHeader( - "Accept", - s.dataTypes[ 0 ] && s.accepts[ s.dataTypes[ 0 ] ] ? - s.accepts[ s.dataTypes[ 0 ] ] + - ( s.dataTypes[ 0 ] !== "*" ? ", " + allTypes + "; q=0.01" : "" ) : - s.accepts[ "*" ] - ); - - // Check for headers option - for ( i in s.headers ) { - jqXHR.setRequestHeader( i, s.headers[ i ] ); - } - - // Allow custom headers/mimetypes and early abort - if ( s.beforeSend && - ( s.beforeSend.call( callbackContext, jqXHR, s ) === false || completed ) ) { - - // Abort if not done already and return - return jqXHR.abort(); - } - - // Aborting is no longer a cancellation - strAbort = "abort"; - - // Install callbacks on deferreds - completeDeferred.add( s.complete ); - jqXHR.done( s.success ); - jqXHR.fail( s.error ); - - // Get transport - transport = inspectPrefiltersOrTransports( transports, s, options, jqXHR ); - - // If no transport, we auto-abort - if ( !transport ) { - done( -1, "No Transport" ); - } else { - jqXHR.readyState = 1; - - // Send global event - if ( fireGlobals ) { - globalEventContext.trigger( "ajaxSend", [ jqXHR, s ] ); - } - - // If request was aborted inside ajaxSend, stop there - if ( completed ) { - return jqXHR; - } - - // Timeout - if ( s.async && s.timeout > 0 ) { - timeoutTimer = window.setTimeout( function() { - jqXHR.abort( "timeout" ); - }, s.timeout ); - } - - try { - completed = false; - transport.send( requestHeaders, done ); - } catch ( e ) { - - // Rethrow post-completion exceptions - if ( completed ) { - throw e; - } - - // Propagate others as results - done( -1, e ); - } - } - - // Callback for when everything is done - function done( status, nativeStatusText, responses, headers ) { - var isSuccess, success, error, response, modified, - statusText = nativeStatusText; - - // Ignore repeat invocations - if ( completed ) { - return; - } - - completed = true; - - // Clear timeout if it exists - if ( timeoutTimer ) { - window.clearTimeout( timeoutTimer ); - } - - // Dereference transport for early garbage collection - // (no matter how long the jqXHR object will be used) - transport = undefined; - - // Cache response headers - responseHeadersString = headers || ""; - - // Set readyState - jqXHR.readyState = status > 0 ? 4 : 0; - - // Determine if successful - isSuccess = status >= 200 && status < 300 || status === 304; - - // Get response data - if ( responses ) { - response = ajaxHandleResponses( s, jqXHR, responses ); - } - - // Convert no matter what (that way responseXXX fields are always set) - response = ajaxConvert( s, response, jqXHR, isSuccess ); - - // If successful, handle type chaining - if ( isSuccess ) { - - // Set the If-Modified-Since and/or If-None-Match header, if in ifModified mode. - if ( s.ifModified ) { - modified = jqXHR.getResponseHeader( "Last-Modified" ); - if ( modified ) { - jQuery.lastModified[ cacheURL ] = modified; - } - modified = jqXHR.getResponseHeader( "etag" ); - if ( modified ) { - jQuery.etag[ cacheURL ] = modified; - } - } - - // if no content - if ( status === 204 || s.type === "HEAD" ) { - statusText = "nocontent"; - - // if not modified - } else if ( status === 304 ) { - statusText = "notmodified"; - - // If we have data, let's convert it - } else { - statusText = response.state; - success = response.data; - error = response.error; - isSuccess = !error; - } - } else { - - // Extract error from statusText and normalize for non-aborts - error = statusText; - if ( status || !statusText ) { - statusText = "error"; - if ( status < 0 ) { - status = 0; - } - } - } - - // Set data for the fake xhr object - jqXHR.status = status; - jqXHR.statusText = ( nativeStatusText || statusText ) + ""; - - // Success/Error - if ( isSuccess ) { - deferred.resolveWith( callbackContext, [ success, statusText, jqXHR ] ); - } else { - deferred.rejectWith( callbackContext, [ jqXHR, statusText, error ] ); - } - - // Status-dependent callbacks - jqXHR.statusCode( statusCode ); - statusCode = undefined; - - if ( fireGlobals ) { - globalEventContext.trigger( isSuccess ? "ajaxSuccess" : "ajaxError", - [ jqXHR, s, isSuccess ? success : error ] ); - } - - // Complete - completeDeferred.fireWith( callbackContext, [ jqXHR, statusText ] ); - - if ( fireGlobals ) { - globalEventContext.trigger( "ajaxComplete", [ jqXHR, s ] ); - - // Handle the global AJAX counter - if ( !( --jQuery.active ) ) { - jQuery.event.trigger( "ajaxStop" ); - } - } - } - - return jqXHR; - }, - - getJSON: function( url, data, callback ) { - return jQuery.get( url, data, callback, "json" ); - }, - - getScript: function( url, callback ) { - return jQuery.get( url, undefined, callback, "script" ); - } -} ); - -jQuery.each( [ "get", "post" ], function( i, method ) { - jQuery[ method ] = function( url, data, callback, type ) { - - // Shift arguments if data argument was omitted - if ( isFunction( data ) ) { - type = type || callback; - callback = data; - data = undefined; - } - - // The url can be an options object (which then must have .url) - return jQuery.ajax( jQuery.extend( { - url: url, - type: method, - dataType: type, - data: data, - success: callback - }, jQuery.isPlainObject( url ) && url ) ); - }; -} ); - - -jQuery._evalUrl = function( url, options ) { - return jQuery.ajax( { - url: url, - - // Make this explicit, since user can override this through ajaxSetup (#11264) - type: "GET", - dataType: "script", - cache: true, - async: false, - global: false, - - // Only evaluate the response if it is successful (gh-4126) - // dataFilter is not invoked for failure responses, so using it instead - // of the default converter is kludgy but it works. - converters: { - "text script": function() {} - }, - dataFilter: function( response ) { - jQuery.globalEval( response, options ); - } - } ); -}; - - -jQuery.fn.extend( { - wrapAll: function( html ) { - var wrap; - - if ( this[ 0 ] ) { - if ( isFunction( html ) ) { - html = html.call( this[ 0 ] ); - } - - // The elements to wrap the target around - wrap = jQuery( html, this[ 0 ].ownerDocument ).eq( 0 ).clone( true ); - - if ( this[ 0 ].parentNode ) { - wrap.insertBefore( this[ 0 ] ); - } - - wrap.map( function() { - var elem = this; - - while ( elem.firstElementChild ) { - elem = elem.firstElementChild; - } - - return elem; - } ).append( this ); - } - - return this; - }, - - wrapInner: function( html ) { - if ( isFunction( html ) ) { - return this.each( function( i ) { - jQuery( this ).wrapInner( html.call( this, i ) ); - } ); - } - - return this.each( function() { - var self = jQuery( this ), - contents = self.contents(); - - if ( contents.length ) { - contents.wrapAll( html ); - - } else { - self.append( html ); - } - } ); - }, - - wrap: function( html ) { - var htmlIsFunction = isFunction( html ); - - return this.each( function( i ) { - jQuery( this ).wrapAll( htmlIsFunction ? html.call( this, i ) : html ); - } ); - }, - - unwrap: function( selector ) { - this.parent( selector ).not( "body" ).each( function() { - jQuery( this ).replaceWith( this.childNodes ); - } ); - return this; - } -} ); - - -jQuery.expr.pseudos.hidden = function( elem ) { - return !jQuery.expr.pseudos.visible( elem ); -}; -jQuery.expr.pseudos.visible = function( elem ) { - return !!( elem.offsetWidth || elem.offsetHeight || elem.getClientRects().length ); -}; - - - - -jQuery.ajaxSettings.xhr = function() { - try { - return new window.XMLHttpRequest(); - } catch ( e ) {} -}; - -var xhrSuccessStatus = { - - // File protocol always yields status code 0, assume 200 - 0: 200, - - // Support: IE <=9 only - // #1450: sometimes IE returns 1223 when it should be 204 - 1223: 204 - }, - xhrSupported = jQuery.ajaxSettings.xhr(); - -support.cors = !!xhrSupported && ( "withCredentials" in xhrSupported ); -support.ajax = xhrSupported = !!xhrSupported; - -jQuery.ajaxTransport( function( options ) { - var callback, errorCallback; - - // Cross domain only allowed if supported through XMLHttpRequest - if ( support.cors || xhrSupported && !options.crossDomain ) { - return { - send: function( headers, complete ) { - var i, - xhr = options.xhr(); - - xhr.open( - options.type, - options.url, - options.async, - options.username, - options.password - ); - - // Apply custom fields if provided - if ( options.xhrFields ) { - for ( i in options.xhrFields ) { - xhr[ i ] = options.xhrFields[ i ]; - } - } - - // Override mime type if needed - if ( options.mimeType && xhr.overrideMimeType ) { - xhr.overrideMimeType( options.mimeType ); - } - - // X-Requested-With header - // For cross-domain requests, seeing as conditions for a preflight are - // akin to a jigsaw puzzle, we simply never set it to be sure. - // (it can always be set on a per-request basis or even using ajaxSetup) - // For same-domain requests, won't change header if already provided. - if ( !options.crossDomain && !headers[ "X-Requested-With" ] ) { - headers[ "X-Requested-With" ] = "XMLHttpRequest"; - } - - // Set headers - for ( i in headers ) { - xhr.setRequestHeader( i, headers[ i ] ); - } - - // Callback - callback = function( type ) { - return function() { - if ( callback ) { - callback = errorCallback = xhr.onload = - xhr.onerror = xhr.onabort = xhr.ontimeout = - xhr.onreadystatechange = null; - - if ( type === "abort" ) { - xhr.abort(); - } else if ( type === "error" ) { - - // Support: IE <=9 only - // On a manual native abort, IE9 throws - // errors on any property access that is not readyState - if ( typeof xhr.status !== "number" ) { - complete( 0, "error" ); - } else { - complete( - - // File: protocol always yields status 0; see #8605, #14207 - xhr.status, - xhr.statusText - ); - } - } else { - complete( - xhrSuccessStatus[ xhr.status ] || xhr.status, - xhr.statusText, - - // Support: IE <=9 only - // IE9 has no XHR2 but throws on binary (trac-11426) - // For XHR2 non-text, let the caller handle it (gh-2498) - ( xhr.responseType || "text" ) !== "text" || - typeof xhr.responseText !== "string" ? - { binary: xhr.response } : - { text: xhr.responseText }, - xhr.getAllResponseHeaders() - ); - } - } - }; - }; - - // Listen to events - xhr.onload = callback(); - errorCallback = xhr.onerror = xhr.ontimeout = callback( "error" ); - - // Support: IE 9 only - // Use onreadystatechange to replace onabort - // to handle uncaught aborts - if ( xhr.onabort !== undefined ) { - xhr.onabort = errorCallback; - } else { - xhr.onreadystatechange = function() { - - // Check readyState before timeout as it changes - if ( xhr.readyState === 4 ) { - - // Allow onerror to be called first, - // but that will not handle a native abort - // Also, save errorCallback to a variable - // as xhr.onerror cannot be accessed - window.setTimeout( function() { - if ( callback ) { - errorCallback(); - } - } ); - } - }; - } - - // Create the abort callback - callback = callback( "abort" ); - - try { - - // Do send the request (this may raise an exception) - xhr.send( options.hasContent && options.data || null ); - } catch ( e ) { - - // #14683: Only rethrow if this hasn't been notified as an error yet - if ( callback ) { - throw e; - } - } - }, - - abort: function() { - if ( callback ) { - callback(); - } - } - }; - } -} ); - - - - -// Prevent auto-execution of scripts when no explicit dataType was provided (See gh-2432) -jQuery.ajaxPrefilter( function( s ) { - if ( s.crossDomain ) { - s.contents.script = false; - } -} ); - -// Install script dataType -jQuery.ajaxSetup( { - accepts: { - script: "text/javascript, application/javascript, " + - "application/ecmascript, application/x-ecmascript" - }, - contents: { - script: /\b(?:java|ecma)script\b/ - }, - converters: { - "text script": function( text ) { - jQuery.globalEval( text ); - return text; - } - } -} ); - -// Handle cache's special case and crossDomain -jQuery.ajaxPrefilter( "script", function( s ) { - if ( s.cache === undefined ) { - s.cache = false; - } - if ( s.crossDomain ) { - s.type = "GET"; - } -} ); - -// Bind script tag hack transport -jQuery.ajaxTransport( "script", function( s ) { - - // This transport only deals with cross domain or forced-by-attrs requests - if ( s.crossDomain || s.scriptAttrs ) { - var script, callback; - return { - send: function( _, complete ) { - script = jQuery( " - - - - - - - - - - - - - - - - - - -
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    Files used in PDF extraction

    -
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    Configuration file

    -

    Configuration files may define the PDF processing parameters. -By default, the pdfgetx3 program attempts to read -.pdfgetx3.cfg file from the user HOME directory, -then .pdfgetx3.cfg and pdfgetx3.cfg files -from the current working directory. -If configuration file has a different name, it needs to be specified -with the -c, --config option. -The pdfgetn3 program works in the same way, -except it checks for configuration files -~/.pdfgetn3.cfg, .pdfgetn3.cfg and pdfgetn3.cfg.

    -

    The easiest way of creating a configuration file is to generate -a template content using the --createconfig option as

    -
    pdfgetx3 --createconfig=test.cfg
-
    -
    -

    and then change the generated test.cfg file in your favorite text -editor. The configuration file follows a simple “varname=value” syntax, -any lines starting with “#” are ignored as comments.

    -

    The configuration file has several sections marked as [SECTIONNAME]. -The [DEFAULT] section is mandatory and it contains the default -global settings. Any other sections are optional and they are applied -only when selected with the -s, --section option on the -command line. Thus

    -
    pdfgetx3 --config=test.cfg --section=nacl
-
    -
    -

    would read the parameters from the [nacl] section after reading the -defaults. Having several sections in the configuration -file is useful when there are multiple measurements that share most of -the parameters, but differ in a few of them, for example in chemical -composition. The configuration file can then contain sections per each -sample that define only the composition, while all other parameters are -specified just once in the global DEFAULT section.

    -
    -
    -

    Input files

    -

    PDFgetX3 and PDFgetN3 accept input powder diffraction data -in the form of two-column text file, -where the first column x is either the scattering angle -2Θ in degrees, momentum transfer Q in inverse nanometers or Q -in inverse ångströms. The second column y contains the corresponding -scattered intensities normalized per unit solid angle. The actual type -of the x-values is identified by the dataformat parameter. -The input files may contain header with comments or metadata, and the -actual data are read from the first long section of numerical values.

    -

    The input files are usually passed as command-line arguments to -pdfgetx3 or pdfgetn3 programs and must be paths -accessible from the current working directory.

    -

    Input files can be also defined by setting the inputfile -value in the configuration file. The -d, --datapath -option can be then used to provide additional data directories to -search for these inputs and for the backgroundfile. -This is to support configuration files located in a different -directory than the data.

    -

    When the --find option is active, the pdfgetx3 arguments -are understood as filename patterns and the input files are found -in the current or specified directory.

    -
    -
    -

    Output files

    -

    PDFgetX3 and PDFgetN3 can produce up to four different output data files:

    -
      -

    • .iq – I(Q), the background-corrected -intensities sampled on a regular Q-space grid in inverse ångströms,

      • -

    • .sq – S(Q), the total scattering structure function, -with intensities normalized by average scattering factors and -corrected by a polynomial fit,

      • -

    • .fq – F(Q), the reduced structure function equal to Q(S(Q) - 1),

      • -

    • .gr – G(r), the resultant PDF, where the first column is the -separation r in ångströms and the second is the function G in -Å-2.

      • -
    -

    You can specify what output files should be produced by setting the -outputtypes parameter in the configuration file or by -passing the -t, --outputtypes on the command line.

    -

    The header of all output files contains the parameter values that were -used in the calculation and thus it is by itself a valid configuration -file. When passed as an argument to the --config option, -the PDFgetX3 will reproduce the previous calculation.

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    Navigation

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    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.1.0/genindex.html b/static_root/doc/pdfgetx/2.1.0/genindex.html deleted file mode 100644 index aab9129a..00000000 --- a/static_root/doc/pdfgetx/2.1.0/genindex.html +++ /dev/null @@ -1,844 +0,0 @@ - - - - - - - Index — diffpy.pdfgetx 2.1.0 documentation - - - - - - - - - - - - - - - - - - - - -
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    Installation

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    Software requirements

    -

    This software is written in Python programming language, therefore -you must have Python 3.7, 3.6, 3.5 or 2.7 installed. In addition, -the following third-party Python libraries are also required:

    -
      -

    • pip - Python package installer

      • -

    • setuptools - tools for installing Python packages

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    • six - Python 2 and 3 compatibility library

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    • NumPy - library for scientific computing with Python

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    • matplotlib - Python plotting library

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    • IPython - enhanced interactive Python shell

      • -
    -

    Standard Python releases can be obtained from -https://www.python.org/downloads. -The third-party libraries can be found at the -Python Package Index -or using any Internet search engine.

    -

    Another more convenient option is to obtain one of the science-oriented -Python distributions such as -Anaconda Python, -Enthought Canopy or -PythonXY, -These distributions already include all the necessary libraries, so the -required Python software can be all installed in one step.

    -

    On Linux operating systems the third-party libraries are usually -included in a system software repository. For example on an -Ubuntu Linux computer the software dependencies can be all installed -with a single shell command

    -
    sudo apt-get install \
-  python3-pip python3-setuptools python3-six \
-  python3-numpy python3-matplotlib ipython3
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    -
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    This may be, of course, as well accomplished using the GUI -driven Synaptic package manager. Other Linux -distributions may use different software management tools, -but the names of the necessary packages should be very similar -to those above.

    -

    On Windows operating system, it may be necessary to add the -C:\Python37 directory and the scripts directory -C:\Python37\Scripts to the system PATH. Some Python -distributions already do so as a part of their installation process. The -easiest way to check is to start the Command Prompt, type -there python and see if this starts the Python interpreter.

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    Installation

    -

    The diffpy.pdfgetx software is distributed as a Python wheel file, -which can be obtained from the -Columbia Technology Ventures. -Once all the required software is in -place, start the command prompt on Windows or a Unix terminal on Linux -or Mac, navigate to the directory that contains the wheel file and -execute the following command:

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    pip install ./diffpy.pdfgetx-VERSION.whl
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    Here VERSION needs to be replaced to match the actual filename. It is -critical that pip installer is from a supported Python version otherwise -the program would not work. On Linux and Mac operating systems the installation may need to run with root user privileges, for example, by prepending sudo to the command line above. If root access is not available, use the pip install options --user or --prefix to install the software to a user-writable directory.

    -

    The package provides three programs for PDF conversion, pdfgetx3, pdfgetn3 and pdfgets3. To check if they are correctly installed run

    -
    pdfgetx3 --version
-pdfgetn3 --version
-pdfgets3 --version
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    This should display the software version, which should agree -with the VERSION string in the wheel package name. -The installation also includes a plotdata -command for an easy plotting of text data files. To verify -if plotdata works, run the plotdata --version command. -Finally, a comprehensive test of the installed software can -be executed using

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    python -m diffpy.pdfgetx.tests.run
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    Note

    -

    Older versions of diffpy.pdfgetx use Python egg format -instead of Python wheel. -To install these use the easy_install command as follows:

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    python -m easy_install ./diffpy.pdfgetx-VERSION.egg
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    IPython magic command

    -

    These instructions are intended for IPython users who would like to -integrate PDFgetX3, PDFgetN3 and PDFgetS3 into their IPython environment. If -you don’t plan to customize IPython in such way you can safely skip -this paragraph.

    -

    When pdfgetx3 or pdfgetn3 or pdfgets3 is run in interactive mode, it start -IPython interactive shell and define an extra %pdfgetx3, %pdfgetn3 and %pdfgets3 magic commands within the IPython session. The IPython -magic commands are not valid Python code, but work in a similar -fashion as standard shell commands. The %pdfgetx3, %pdfgetn3 and %pdfgets3 magics can be thus used with the same options and arguments as if run from the shell. This is useful for processing more files, while -preserving all plots or variables that were already created -in an IPython session.

    -

    The %pdfgetx3, %pdfgetn3 and %pdfgets3 magic commands can be defined -permanently so they are available in all IPython sessions. To set -this up

    -
      -

    1. find the profile_default/ipython_config.py file and open it -in a text editor. If that file does not exists, -create it first by executing

      -
      ipython profile create
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      -
      -
      2. -

    2. navigate to the paragraph that contains the -c.InteractiveShellApp.extensions and add there -the following line

      -
      c.InteractiveShellApp.extensions = ['diffpy.pdfgetx.ipy_magics']
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      There must be no leading indent, i.e., the text must start at the -very first column.

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    Navigation

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    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.1.0/interact.html b/static_root/doc/pdfgetx/2.1.0/interact.html deleted file mode 100644 index 0b1469a6..00000000 --- a/static_root/doc/pdfgetx/2.1.0/interact.html +++ /dev/null @@ -1,385 +0,0 @@ - - - - - - Interactive mode — diffpy.pdfgetx 2.1.0 documentation - - - - - - - - - - - - - - - - - - - - - - -
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    Navigation

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    Interactive mode

    -

    The interactive mode is activated by using either the --i, --interact option or a non-empty ---plot option. In the interactive mode -the program starts an IPython interactive shell and pre-loads several -functions and variables related to the PDF calculation. It also defines -IPython commands %pdfgetx3 and %pdfgetn3, which can be used with -the same syntax as the pdfgetx3 and pdfgetn3 in -system shell. -The interactive session is also initialized with all functions from the -matplotlib.pyplot module for convenient plotting. -The functions and variables related to PDF processing are:

    -
    -
    -pdfgetter(x=None, y=None, filename='', **kwargs)
    -

    Instance of the PDFGetter class which serves as a -low-level function that calculates the PDF. This is a callable -object, which takes as an argument a pair of input arrays for -(Q, intensity) or (2Θ, intensity) depending on -dataformat. It can be also called with a keyword -argument filename=FILE, which would read the input arrays -from the specified file. When called with no arguments, -it calculates PDF from the last input data.

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    Parameters
    -
      -

    • x (numpy.ndarray, optional) – -The Q or 2Θ values in powder diffraction pattern.

      • -

    • y (numpy.ndarray, optional) – -The scattered intensities in powder diffraction pattern

      • -

    • filename (str, optional) – -The text data file for loading the x, y values when -they are not specified.

      • -

    • kwargs (misc, optional) – -Extra keyword arguments that are applied to -the config object, for example qmax=20.

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    Returns
    -

    A pair of output arrays (r, G).

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    -config
    -

    Instance of the PDFConfig class that stores the -parameters and input files for the program. -Use print(config) to display the current configuration values. -This is the same object as pdfgetter.config. Configuration -may be changed by setting a respective attribute of the -config object, for example:

    -
    In [1]: config.qmax = 21
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    -
    -

    The config values may be also changed by calling the -pdfgetter() or processfiles() function with a -corresponding keyword argument, for example -processfiles(qmax=20, force="once").

    -
    - -
    -
    -iraw
    -
    -iq
    -
    -sq
    -
    -fq
    -
    -gr
    -

    These variables are assigned the input raw intensities and the -intermediate results, stored as matrix rows. The matrix rows -correspond to twotheta1, intensity1, twotheta2, intensity2, etc. -Because matrices are iterated row first, the raw intensities -from all input files can be plotted with the matplotlib plot -function as plot(*iraw).

    -

    These variables should be considered read-only and are reset -with subsequent PDF calculations.

    -
    - -
    -
    -tuneconfig(plotids=None, pdfgetter=None, axeslist=None)
    -

    Show a GUI dialog for interactive tuning of configuration variables.

    -
    -
    Parameters
    -
      -

    • plotids – The string or iterable that specify what interactive plots should be -tuned. By default the same as config.plot. It can be also an -integer index or name of a transformation in pdfgetter() or -a reference to a Transformation object.

      • -

    • pdfgetter – The optional PDFGetter object to be tuned. -This is by default the interactive pdfgetter() object.

      • -

    • axeslist – An optional list of matplotlib Axes for showing interactive plots. -When None, use subplot(N, 1, i) to create any necessary axes.

      • -
    -
    -
    -
    -

    Note

    -

    Changes from tuneconfig() apply only to the configuration -and results in memory. Use the processfiles() function -to save them to disk.

    -
    -
    -

    See also

    -

    Interactive tuning of parameters tutorial

    -
    -
    - -
    -
    -processfiles(filename=None, **kwargs)
    -

    Process all input files again with the current configuration values. -This is a higher-level function than pdfgetter(), as -it also saves output files and produces plots as specified by the -config object.

    -
    -
    Parameters
    -
      -

    • filename – One or more input files to be converted to PDFs and saved or -plotted according to the config settings. Use the -previous list of input files when not specified.

      • -

    • kwargs – An optional keyword arguments to set for the config -object, for example (force="once", qmax=18).

      • -
    -
    -
    -

    This function updates the config.inputfiles -list and the iraw, iq, -sq, fq and gr -interactive variables.

    -
    - -
    -
    -clearsession()
    -

    Clear all elements from the config.inputfiles -and also the -iraw, iq, sq, -fq and gr variables.

    -
    -
    Returns
    -

    No return value.

    -
    -
    -
    - -
    -
    -loaddata(filename, minrows=10, usecols=None, **kwargs)
    -

    Find and load data from a text file.

    -

    The data reading starts at the first matrix block of at least minrows rows -and constant number of columns. This seems to work for most of the -datafiles including those generated by PDFGetX2.

    -
    -
    Parameters
    -
      -

    • filename (str) – Name of the file to load the text data from.

      • -

    • minrows (int, optional) – Minimum number of rows in the first data block, by default 10. -All rows must have the same number of floating point values.

      • -

    • usecols (int, str, slice, iterable, optional) – Indices or names of the columns to be loaded from the data block, -the default is all columns. Data blocks that do not contain -sufficient number of columns are skipped. When usecols contain -string items, they are translated to column indices by looking -up a header line preceding the data block. String items formatted -as i:j:k are converted to slice objects. When usecols type -is string it is split to a list of names at comma and whitespace -characters.

      • -

    • unpack (bool, optional) – Return data as a sequence of columns that allows tuple unpacking -such as x, y = loaddata(FILENAME, unpack=True). Note that -transposing the loaded array as loaddata(FILENAME).T has -the same effect. The default is False.

      • -

    • kwargs (misc, optional) – Extra keyword arguments that are passed to numpy.loadtxt.

      • -
    -
    -
    Returns
    -

    data (numpy.ndarray) – The data block loaded from the text file.

    -
    -
    -
    -

    See also

    -

    numpy.loadtxt()

    -
    -

    This function can be imported from the -diffpy.pdfgetx module.

    -
    - -
    -
    -plotdata(filenames, style=None, x=None, y=None, log=None, ax=None, **kwargs)
    -

    Plot one or more text data files.

    -

    The files are searched for data blocks which have enough columns -to satisfy both x and y selectors of the plotted data. This -may result in an empty plot when file has none wide-enough data -block (e.g., when y=100).

    -
    -
    Parameters
    -
      -

    • filenames (str or an iterable of string file names) – One or more text data files to be plotted.

      • -

    • style (str) – Optional style argument for the matplotlib plot() function.

      • -

    • x (int, str, or iterable, optional) – The column to be used for the x data. This can be a zero-based -index of the desired column or a column name from data header. -A special symbol “.” can be used for a sequential data index. -When not specified, use the first column.

      • -

    • y (int, str, iterable, or slice, optional) – One or more columns to be used for the y data. This can be -a single zero-based index of the desired column or an iterable -of several indices. The y value can be also a string which -is split at commas and converted to integers, column names -or slice objects, e.g. “0,sine,4:7”. The slice instances -are applied to the entire data block from each loaded file. -Use the second column when not specified.

      • -

    • log ({‘x’, ‘y’}, optional) – Set logarithmic scaling for the specified axis and linear scaling -for all others. For example, log="y" applies linear scaling -to the x-axis and logarithmic to the y-axis. Keep the current -axis scaling when not specified.

      • -

    • ax (matplotlib.axes.Axes, optional) – The axes to plot to. The plotting will be performed using the -ax.plot method. The default is pyplot.gca().

      • -

    • kwargs (misc, optional) – Keyword arguments for the matplotlib plot() function.

      • -
    -
    -
    Returns
    -

    lines (list) – The matplotlib Line2D objects added to the current axis.

    -
    -
    -
    -

    See also

    -

    diffpy.pdfgetx.loaddata()

    -
    -

    This function can be imported from the -diffpy.pdfgetx.plotdata module.

    -
    - -
    -
    -findfiles(patterns=(), path='.', dotfiles=False)
    -

    Find files that match all specified patterns.

    -

    Pattern syntax:

    -
      -

    • ^start - match “start” only at the beginning of the string.

      • -

    • end$ - match “end” only at the end of string.

      • -

    • <7> - match number 7 preceded by any number of leading zeros.

      • -

    • <1-34> - match an integer range from 1 to 34 inclusive.

      • -

    • <7-> - match an integer greater or equal 7.

      • -

    • <-> - match any integer.

      • -

    • + - start a new group of patterns to match more files.

      • -

    • dir/ - set search path effective from the current pattern group.

      • -
    -

    All integer ranges <N-M> above allow one or more leading zeros. -The range syntax does not support matching of negative numbers.

    -
    -
    Parameters
    -
      -

    • patterns (iterable of strings or str, optional) – String patterns that must all match in returned filenames. -Can be also a single string with patterns separated by -whitespace characters. When empty match all files in the -current directory or in the path. A single + starts -a new pattern group for additional matches. Each pattern -group may have one entry containing /, for example, -dir/ or ./, which sets the search directory for -this and subsequent pattern groups. When pattern group -contains only the path entry it reuses file patterns from -the previous group.

      • -

    • path (str, optional) – Directory to be searched for the files. The default is “.” -to search the current directory.

      • -

    • dotfiles (bool, optional) – When True search also the hidden “.” starting files. These -files are by default ignored, but can be explicitly selected -by adding the ^. pattern.

      • -
    -
    -
    Returns
    -

    filenames (list) – The list of matching filenames. Return all files when -patterns are not specified.

    -
    -
    -

    This function can be imported from the -diffpy.pdfgetx module.

    -
    - -
    - - -
    -
    -
    - -
    -
    -
    -

    Navigation

    - -
    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.1.0/intro.html b/static_root/doc/pdfgetx/2.1.0/intro.html deleted file mode 100644 index 679556f8..00000000 --- a/static_root/doc/pdfgetx/2.1.0/intro.html +++ /dev/null @@ -1,176 +0,0 @@ - - - - - - Introduction — diffpy.pdfgetx 2.1.0 documentation - - - - - - - - - - - - - - - - - - - - - - -
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    Navigation

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    - -
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    Introduction

    -

    diffpy.pdfgetx is a simple yet powerful software for converting X-ray or -neutron powder diffraction data to atomic Pair Distribution Functions -(PDFs). In addition, it also allows the extraction of PDFs from small-angle -scattering (SAS) data. The software includes three command line programs -PDFgetX3, PDFgetN3 and PDFgetS3 for processing X-ray, -constant-wavelength neutron and small-angle diffraction data -respectively. PDFgetX3, PDFgetN3 and PDFgetS3 can be used in a batch -mode to convert a series of data files without user intervention. The -programs can be also run in an interactive mode that allows to control -process parameters and plot the PDFs and any intermediate results. Users -can interactively tune the PDF processing parameters, visualize their effect on the results and adjust them to their optimum values. The programs are bundled with Python library diffpy.pdfgetx for PDF processing functions, which can be used in custom Python scripts.

    -
    -

    License notice

    -

    Use of this software is subject to and permitted only under a separate, -written Use License granted by Columbia University. If you or your employer -is not a party to such an agreement, then your use of this software is -prohibited. If you don’t know whether or not your anticipated use is under -a license, you must contact Prof. Simon Billinge at sb2896@columbia.edu. -Use of this software without a license is prohibited.

    -

    Copyright 2009-2020, Trustees of Columbia University in the City of New York.

    -

    For more information please email Prof. Simon Billinge at sb2896@columbia.edu

    -
    -
    -

    Authors

    -

    This code was written by members of the Billinge Group at -Columbia University and Brookhaven National Laboratory including -Pavol Juhás, -Timur Davis, -Chia-Hao (Timothy) Liu, -Christopher Wright, -Christopher Farrow, -Hung Vuong, -Songsheng Tao, -Simon Billinge.

    -
    -
    -

    References

    -

    If you use this program for a scientific research that leads -to publication, we ask that you acknowledge use of the program -by citing the following paper in your publication:

    -
    -

    P. Juhás and T. Davis, C. L. Farrow, S. J. L. Billinge -PDFgetX3: A rapid and highly automatable program for processing -powder diffraction data into total scattering pair distribution -functions, -J. Appl. Crystallogr. 46, 560-566 (2013)

    -
    -

    For research publications that use this software to process neutron -diffraction data we ask you to also cite:

    -
    -

    P. Juhás, J. N. Louwen, L. van Eijck, E. T. C. Vogt, -S. J. L. Billinge -PDFgetN3: atomic pair distribution functions from neutron -powder diffraction data using ad hoc corrections, -J. Appl. Crystallogr. 51 (2018)

    -
    -

    For research publications utilising the sasPDF utility, PDFGetS3, we ask you to acknowledge the use of the program by citing following paper in your publication:

    -
    -

    CH Liu, E. Janke, R. Li, P. Juhás, O. Gang, D. V. Talapin, S. J. L. Billinge -sasPDF: pair distribution function analysis of nanoparticle assemblies from small-angle-scattering data.

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    Navigation

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    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.1.0/options.html b/static_root/doc/pdfgetx/2.1.0/options.html deleted file mode 100644 index 671e345b..00000000 --- a/static_root/doc/pdfgetx/2.1.0/options.html +++ /dev/null @@ -1,663 +0,0 @@ - - - - - - Options and parameters — diffpy.pdfgetx 2.1.0 documentation - - - - - - - - - - - - - - - - - - - - - - -
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    Navigation

    - -
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    Options and parameters

    -

    PDFgetX3, PDFgetN3 and PDFgetS3 are very flexible in allowing users to customize -the actions of the program. They have a number of parameters that can -be specified either in configuration file or as command line options. -Here is a complete description of the parameters and options used by -either program.

    -
    -

    Note

    -

    The command line options start with a leading “-” and can -be only used as command line arguments when starting the -pdfgetx3 program. Within configuration file the parameter -names are plain words without any leading dashes. Finally, -parameters can be also set in the interactive mode as attributes of -the config object, but the assignments must be valid -Python statements. Here are examples of setting composition of -a processed specimen using each of these forms:

    -
      -

    1. assigned in configuration file:

      -
      ...
-composition = CaTiO3
-...
-
      -
      -
      2. -

    2. set as a command-line option when starting pdfgetx3 or -pdfgetn3:

      -
      pdfgetx3 --composition=CaTiO3
-
      -
      -
      3. -

    3. set in the IPython interactive mode:

      -
      pdfgetx3 -i
-...
-In [1]: config.composition = "CaTiO3"
-
      -
      -
      4. -
    -
    -
    -

    Program operation

    -
    -
    --h, --help
    -

    Display a brief usage information with a list of command line options -and exit.

    -
    - -
    -
    --V, --version
    -

    Display the program version and exit.

    -
    - -
    -
    ---manual
    -

    Open this manual in a Web browser and exit.

    -
    - -
    -
    --f, --find
    -
    - -
    -

    Select input files that match all patterns. The command -line arguments are by default taken as input files. However, -with the --find option they are processed as -file patterns and the matching files are then used as inputs. -The input files are by default searched in the current directory -unless there is a path entry (e.g., data/) that -selects a different search path. The search patterns are -interpreted as fixed strings, all of which must be present -in the file name. A single argument + starts -a new group of patterns to match more files that are not -covered by one set of patterns. Additional pattern -groups reuse the current search path unless they provide -their own path value. Pattern groups containing only -a path entry reuse file patterns from the last group. -When pattern groups overlap the repeated matches are ignored -to make the resulting list of files unique. Files starting -with . are ignored unless there is ^. pattern -that explicitly matches them. The search -syntax provides the following special patterns:

    - ---- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

    ^

    match at the beginning of the string, i.e., ^start -matches only filenames that start with “start”.

    $

    match at the end of string, for example, .chi$ selects -file names ending with “.chi”. A $ on its own -matches every string and can be used to select all files.

    <N>

    match number N preceded by any number of leading zeros, -e.g., <7> would match in “f7.chi”, “f007.chi”, but not -in “f77.chi”.

    <N-M>

    match an integer range from N to M inclusive. -The matched number may have one or more leading zeros.

    <7->

    match number 7 or larger.

    <-7>

    match number 7 or smaller.

    <->

    match any integer number.

    +

    start a new pattern group, for example, .chi$ + .dat$

    /

    set search path. An argument containing the / symbol -is taken as the search path, for example, data/ or -./. Each pattern group may provide its own search -path effective for that and any subsequent pattern group.

    -

    The ^$<> characters are often special to Unix or Windows -command shells, therefore they need to be enclosed in double -quotes (") when used on command line.

    -
    -

    See also

    -

    tutorial on matching input files

    -
    -
    -
    -
    --l, --list
    -

    List all input files and exit. This is useful with the ---find option to verify if input files -are matched as intended.

    -
    - -
    -
    -

    Configuration file options

    -
    -
    --c CONFIG, --config=CONFIG
    -

    Read custom configuration file after loading the default ones. -Do not load any configuration file when “NONE”.

    -
    - -
    -
    --s NAME, --section=NAME
    -

    Load the custom configuration file section [SectionName] after -loading the [DEFAULT] section. This is useful for creating -several configuration variants in a single configuration file.

    -
    - -
    -
    ---createconfig=FILE
    -

    Write template configuration to a new FILE and exit. Write -to the standard output when FILE is “-“.

    -
    - -

    See also the configuration file section -for further details.

    -
    -
    -

    Input and output options

    -
    -
    -inputfile
    -

    This parameter allows to specify one or more input files in the -configuration file, one file per line. The inputfile -is only used if no input files were provided on the -pdfgetx3 or pdfgetn3 command line.

    -
    - -
    -
    -dataformat
    -
    - -
    -
    ---format=FORMAT
    -

    Format of input files. Available formats are: twotheta, QA, -Qnm corresponding to a two-column text data where the first -column is either the scattering angle 2Θ in degrees, Q in -inverse ångströms or Q in inverse nanometers.

    -
    - -
    -
    -backgroundfile
    -
    - -
    -
    --b FILE, --background=FILE
    -

    Optional datafile with background intensities from an empty sample -holder. It must be in the same dataformat as other input files.

    -
    - -
    -

    Note

    -

    The following input is only used in sas mode.

    -
    -
    -
    -formfactorfile
    -
    - -
    -
    --ff FILE, --formfactorfile=FILE
    -

    Form factor intensities of the scatterers. This is required for sas mode. The form factor file is expected to be in two-column format with (Q, f2avg) data or three-column format with (Q, f2avg, favg2) data. The unit of Q is required to be A^-1.

    -
    - -
    -
    -datapath
    -
    - -
    -
    --d DATAPATH, --datapath=DATAPATH
    -

    One or more extra directories to be searched for input or -background data files. The -d option can be specified -several times to add more directories, these are prepended in front -of any default value. Within configuration file the datapath -directories have to be listed each on a separate line.

    -

    A special value “NONE” (or “none”) clears any previously defined -paths and only the further paths, if any, would be searched for -inputs.

    -
    - -
    -
    -output
    -
    - -
    -
    --o OUTPUT, --output=OUTPUT
    -

    Output file name, write to the standard output when “-“. The --t, --outputtypes option controls what results are -being saved. Normally the OUTPUT is used as a custom basename for -the output files. The OUTPUT may contain @f, @h, @r, @e, @t, @b, @o -tokens, which are expanded as follows:

    - ----- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

    token

    example

    definition

    @h

    dir1/dir2

    the input file directory or “.”

    @r

    dir1/dir2/filename

    the input path with extension removed

    @e

    dat

    the input file extension without “.”

    @t

    filename.dat

    the tail component of the input file

    @b

    filename

    the tail component with extension removed

    @o

    gr

    the output extension iq, sq, fq or gr

    -

    An empty value works the same as “@b.@o” and saves the data -in the current directory with a proper extension for the -saved results. When “@o” is not present in the OUTPUT, it is -appended as a default filename extension.

    -
    - -
    -
    -outputtypes
    -
    - -
    -
    --t TYPES, --outputtypes=TYPES
    -

    Result types to be saved, one or more comma separated values. -Supported values are “iq”, “sq”, “fq”, “gr”, corresponding to the -I(Q), S(Q), F(Q) and G(r) curves; these are also used as output -file extensions.

    -

    Result files are not written when empty, “none” or “NONE”.

    -
    - -
    -
    -force
    -
    - -
    -
    ---force=FORCE
    -

    Overwrite existing output files. By default the output -files are not written if they already exist. Possible values -in a configuration file are “true”, “yes”, “on”, “1” or -“false”, “no”, “off”, “0” or “once”. The special value “once” -permits one overwrite and then resets config.force to -False. Note that in interactive mode the values assigned -to config.force are converted to Python bool -unless equal to “once”.

    -
    - -
    -
    -

    PDF parameters

    -
    -
    -mode
    -
    - -
    -
    ---mode=STRING
    -

    The PDF conversion mode, i.e., the name of the -pdfgetter() setup. The available modes correspond -to the radiation type used in powder diffraction experiment and can -be “xray” or “neutron”.

    -
    - -
    -
    -wavelength
    -
    - -
    -
    --w FLOAT, --wavelength=FLOAT
    -

    X-ray wavelength in ångströms. This value is required -for the “twotheta” dataformat in order to convert the scattering -angles 2Θ to a momentum transfer Q. For other data formats -the wavelength is not necessary and may be left undefined.

    -
    - -
    -
    -twothetazero
    -
    - -
    -
    ---twothetazero=FLOAT
    -

    Position of the zero scattering angle in diffractometer degrees. -This parameter corrects for a constant offset in the -measured 2Θ values. When loading configuration file -it is assumed 0 unless specified otherwise. This parameter -is only effective for the “twotheta” dataformat.

    -
    - -
    -
    -composition
    -
    - -
    -
    ---composition=STRING
    -

    Chemical composition of the sample. Supported formats are -“PbTi0.5Zr0.5O3”, “Pb 1 Ti 1/2 Zr 1/2 O 3” or “CH3 (CH2)3 OH”. -Space characters are ignored, unit counts can be omitted, but it is -important to use a proper upper and lower case in atom symbols. -Elements can appear several times in the formula, e.g., “CH3 CH3”, -and the formula may contain parentheses or fractional -stoichiometries.

    -
    - -
    -
    -bgscale
    -
    - -
    -
    ---bgscale=FLOAT
    -

    Scaling of the background intensities loaded from the -backgroundfile, by default 1.

    -
    - -
    -
    -rpoly
    -
    - -
    -
    ---rpoly=FLOAT
    -

    r-limit for the maximum frequency in the F(Q) correction polynomial. -The PDF is unreliable at shorter r, however a -very small rpoly would disable polynomial correction and -give noisy PDF. -Larger values produce closer fits with a higher degree polynomial, -but when too large, they might smooth-out a useful signal in the -data. The default is 0.9.

    -
    - -
    -
    -qmaxinst
    -
    - -
    -
    ---qmaxinst
    -

    The Q cutoff for the meaningful input intensities in inverse -ångströms. Some data files may contain trailing zeros -or unreliable intensities at the upper bound of the detector range. -The qmaxinst defines a threshold for unreliable data. -The parameter is also used as an upper boundary for the polynomial -fit correction of the S(Q) data.

    -
    - -
    -
    -qmin
    -
    - -
    -
    ---qmin
    -

    The lower Q-limit for the Fourier transformation of the F(Q) curve -in inverse ångströms.

    -
    - -
    -
    -qmax
    -
    - -
    -
    ---qmax
    -

    The upper Q-limit for the Fourier transformation of the F(Q) curve -in inverse ångströms. This is essentially a limit, where sample -signal decays to the level of data noise.

    -
    - -
    -
    -rmin
    -
    - -
    -
    ---rmin=FLOAT
    -

    Lower bound of the r-grid for the calculated PDF in ångströms.

    -
    - -
    -
    -rmax
    -
    - -
    -
    ---rmax=FLOAT
    -

    Upper bound of the r-grid for the calculated PDF in ångströms.

    -
    - -
    -
    -rstep
    -
    - -
    -
    ---rstep=FLOAT
    -

    Spacing of the r-grid for the calculated PDF in ångströms.

    -
    - -
    -
    -

    Other parameters

    -
    -
    -plot
    -
    - -
    -
    --p TYPES, --plot=TYPES
    -

    Plot the specified results. A comma separated list with one or -more items from “iq”, “sq”, “fq”, “gr”. No plot is produced when -empty, “none” or “NONE”. Setting this option turns on the -interactive mode.

    -
    - -
    -
    -interact
    -
    - -
    -
    --i, --interact
    -

    Start an IPython interactive session after processing all files. -Useful for tuning the configuration parameters or interactive -plotting. This is always on when plot option has been set. -See also Interactive mode for further details.

    -
    - -
    -
    -verbose
    -
    - -
    -
    ---verbose=VALUE
    -

    Level of detail for the program to report about its actions. -Possible values are “error”, “warning”, “info”, “debug”, “all” or an -integer number from 0 to 5. Messages are completely suppressed when -0, all messages are printed when verbose is 5 (“all”) or higher. -This option is useful for diagnostics of any unexpected behavior -in the program.

    -
    - -
    -
    - - -
    -
    -
    - -
    -
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    -

    Navigation

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    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.1.0/pdfgetxn3-examples.zip b/static_root/doc/pdfgetx/2.1.0/pdfgetxn3-examples.zip deleted file mode 100644 index 75019fee..00000000 Binary files a/static_root/doc/pdfgetx/2.1.0/pdfgetxn3-examples.zip and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.1.0/plotdata.html b/static_root/doc/pdfgetx/2.1.0/plotdata.html deleted file mode 100644 index 5f081c28..00000000 --- a/static_root/doc/pdfgetx/2.1.0/plotdata.html +++ /dev/null @@ -1,278 +0,0 @@ - - - - - - The plotdata program — diffpy.pdfgetx 2.1.0 documentation - - - - - - - - - - - - - - - - - - - - - - -
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    The plotdata program

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    The PDFgetX3 software includes a simple stand-alone utility -plotdata for plotting text data files. In most cases -this program can be invoked from a command-shell as

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    plotdata file1.dat file2.dat
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    -
    -

    which plots the numerical data from the text files file1.dat, -file2.dat together in a single graph. By default the first -column is used as an x variable and the second column is used for the -y values. After displaying the plot the program starts an IPython -interactive session allowing the user to modify or save plots. The -IPython session is initialized with the filenames variable -containing a list of plotted files. It also pre-loads the -plotdata() and findfiles() functions just as in PDFgetX3 -interactive session. The plotdata() -function works in a similar way as the plotdata program, -just its arguments need to be passed as Python function arguments -instead of command-line options. Thus an equivalent call of the -plotdata() function would be:

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    In [1]: plotdata(['file1.dat', 'file2.dat'])
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    Selecting files

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    The plotdata program includes a file searching feature -that is useful for selecting a set of files in large -directories. It is also convenient for Windows operating systems, -where the command prompt cannot do filename expansion for patterns -such as *.dat. The file search feature is controlled by the -following options:

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    -
    --f, --find
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    Use command line arguments as filename patterns and plot all matching -files. This option works in the same way as for -pdfgetx3, for full details see the -pdfgetx3 --find documentation. Note that -within command line the special patterns ^$<> need to be quoted -in double quotes (") so they are not processed by command shell.

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    - -
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    --l, --list
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    List the input files and exit. This is useful in conjunction -with the -f, --find option to check if data files -are selected as intended.

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    - -

    Assuming the current directory contains 20 files named -file1.dat, file2.dat, …, file20.dat, -the plotting of files 9 to 13 could be done (with a check listing) -as follows

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    $ plotdata -fl "<9-13>.dat"
-file9.dat
-file10.dat
-file11.dat
-file12.dat
-file13.dat
-$ plotdata -f "<9-13>.dat"
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    -
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    Within an interactive IPython session the equivalent plot could be -produced by combining the plotdata() and findfiles() functions as

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    In [1]: plotdata(findfiles("<9-13>.dat"))
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    Selecting x and y data

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    The plotdata program provides several ways of selecting -columns for x or y data and for specifying plot markers or line -formats. The columns can be specified using their integer index, -but one needs to keep in mind the index of the first column is “0” -as per Python indexing conventions. Here is a list of options -supported by the plotdata program (and function):

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    --x X
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    index or name of the x-column to plot. See the -y option -for the supported syntax, but note that X may select only one -column. When set to “.” use the data-row index for x.

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    --y Y
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    index or name of the y-column or columns to plot. The Y column -specification can be a comma separated list of indices, column names -or Python-like ranges, for example “1,2”, “G”, “1:4” (START:STOP, -same as “1,2,3”), “1:4:2” (START:STOP:STEP, same as “1,3”), or -“-2:” (same as “-2,-1”, i.e, the last 2 columns). Because column -indexing starts at “0” the second column must be specified as “1”.

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    The column names work if the data section in the file is preceded by -a headline of unique column names, for example:

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    x     square      cube
-1     1           1
-2     4           8
-3     9           27
-4     16          64
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    For such data file the plotdata program will recognize column names -“x”, “square” and “cube” and an implicit “.” for row index.

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    --s STYLE, --style=STYLE
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    optional plot format specification. See the -matplotlib.pyplot.plot() function -for a list of available formats.

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    --L LOG, --log=LOG
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    axes to be plotted with logarithmic scaling, for example, “x”, “y” or -“xy”. Axes not listed in LOG will use linear scaling.

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    --h, --help
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    display a brief usage info and exit.

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    --V, --version
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    show program version and exit.

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    ---manual
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    Open this manual page in a Web browser and exit.

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    Examples

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    The examples directory plotdata contains a sincos.dat -file that has 3-columns of values labeled as “x”, “sin” and “cos”. -Here are several examples of the plotdata capabilities -when used from command line - the user is encouraged to try them out:

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    plotdata sincos.dat
-plotdata -y 1,2 sincos.dat
-plotdata -x . -y 0:3 sincos.dat
-plotdata -y cos sincos.dat
-plotdata -x sin -y cos -sr-- sincos.dat
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    -
    -

    An equivalent usage from a general IPython session would be:

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    ipython --matplotlib=auto
-In [1]: from diffpy.pdfgetx.plotdata import plotdata
-In [2]: plotdata('sincos.dat')
-In [3]: plotdata('sincos.dat', y=[1,2])
-In [4]: plotdata('sincos.dat', x='.', y=':3')
-In [5]: plotdata('sincos.dat', y='cos')
-In [6]: plotdata('sincos.dat', x='sin', y='cos', style='r--')
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    Quick-start guide

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    This guide assumes that the software has been correctly installed and -its command line programs PDFgetX3, PDFgetN3 and PDFgetS3 can be -executed by typing pdfgetx3, pdfgetn3, or -pdfgets3 in a shell window. Please, refer to the installation section if this is not working yet.

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    pdfgetx3 command

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    The pdfgetx3 program is a command-line application, therefore all -the input files and run-parameters are supplied either as command-line -arguments or through a configuration file. In general, the pdfgetx3 is -executed from a command shell as

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    pdfgetx3 [options] input1 input2 ... inputN
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    -
    -

    The inputN stands for an input powder diffraction data. The -inputN file is a simple two-column text file, where the first -column corresponds to either the 2Θ diffraction angle, or a -momentum transfer, Q, in inverse nanometer or inverse ångström units. -The second column contains the corresponding X-ray intensities. The -input file may start with a header containing comments or metadata -related to the measurement. PDFgetX3 will ignore any text leading to a -long two-column section. The example input files in this manual were -created with the -FIT2D program using -its “chi” output format, thus we will also refer to them as “chi-files”. -A typical content of a “chi” file looks as folows:

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    Pt_bulk-00055.tif: 2-theta Scan
-2-Theta Angle (Degrees)
-
-       1465
- 2.0003892E-02  0.0000000E+00
- 6.0011677E-02  0.0000000E+00
- 1.0001946E-01  0.0000000E+00
- 1.4002724E-01  0.0000000E+00
- 1.8003502E-01  0.0000000E+00
- ...
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    -
    -

    The command-line options are arguments that start with a dash “-” and -are used to specify run-parameters or modify the program behavior. The -options can be specified in a short form that consists of a dash and -a single character, or in a long, more descriptive format starting with -a doubled dash --. Options may require values. For short options, -the value may be joined to the option string, for example --w0.142774, while for the long options it has to be separated -with an equal sign, e.g., --wavelength=0.142774. Although -all the PDF calculation parameters can be passed as command line -options, it is often more convenient to set them in a configuration -file. When run parameter is present both in a configuration file and -as command-line option, the command-line value takes precedence. The -command-line options are all described in the Options and parameters section of -this manual. A brief summary of options can be also displayed by -executing

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    pdfgetx3 --help
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    -
    -

    The best way of getting familiar with PDFgetX3 is to process -the example diffraction data described in the Tutorial. -In general, the first step is to create a commented configuration file pdfgetx3.cfg using:

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    pdfgetx3 --createconfig=pdfgetx3.cfg
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    -
    -

    The configuration file can have any name, but it is preferable -to use either pdfgetx3.cfg or .pdfgetx3.cfg, -for these files are automatically loaded by PDFgetX3. All -other configuration files must be passed explicitly to the program -using the -c, --config option.

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    Open the pdfgetx3.cfg file in a text editor. The lines that -start with a hash mark # are comments and are not used. The lines -starting with a right brace [ denote sections in the configuration -file. The active lines are all formatted as -“NAME=VALUE”. Although PDFgetX3 has many options, in general only a few -of them are critical for the PDF calculation:

    -
      -

    • dataformat – specifies the input data format

      • -

    • wavelength – radiation wavelength in Å required for the -“twotheta” format.

      • -

    • composition – chemical composition of the sample

      • -

    • qmaxinst – upper Q boundary for a meaningful measurement -intensities.

      • -

    • qmax – Q-cutoff for the Fourier transformation that -yields the PDF.

      • -
    -

    Save the updated configuration file and run pdfgetx3 on the input data -FILENAME.chi as

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    pdfgetx3 --verbose=info -t gr FILENAME.chi
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    -
    -

    Here the --verbose=info option makes pdfgetx3 -print -more information about its operation. This helps to verify -if the configuration file is indeed loaded and if the parameter -values are assigned as intended. The PDFgetX3 will not write -any output files unless told so. The -t gr option -tells the program to save the final G(r) curve as a -FILENAME.gr file in the working directory.

    -

    The saved .gr file contains a header with all the calculation -parameters and the input file name. The .gr file can be therefore -also used as a configuration file in order to redo the same -calculation

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    pdfgetx3 -c FILENAME.gr --plot=fq,gr
-
    -
    -

    Note this command does not include any .chi file and this will as -a result process the previously used input FILENAME.chi. -The --plot=fq,gr option tells PDFgetX3 to -display 2 plots for the reduced structure function F(Q) and the -final PDF G(r). The --plot option also implies an -interactive mode -therefore the program does not exit, but starts an -interactive IPython session. To exit the interactive mode, -type exit() and press Enter.

    -
    -
    -

    pdfgetn3 command

    -

    The pdfgetx3 and pdfgetn3 programs operate in a very similar fashion -apart from being set to assume X-ray and neutron data respectively. -The type of the scattering data can be also specified using the ---mode option. Running pdfgetn3 is nearly identical -to executing pdfgetx3 --mode=neutron. The only difference between -these commands is that pdfgetx3 checks for configuration files -pdfgetx3.cfg and .pdfgetx3.cfg, whereas -pdfgetn3 looks for pdfgetn3.cfg and .pdfgetn3.cfg.

    -
    -
    -

    pdfgets3 command

    -

    The pdfgets3 program is virtually the same as its counterparts for x-ray -(pdfgetx3) and neutron (pdfgetn3) diffraction data. The only difference -is that instead of referencing the well documented x-ray or neutron -scattering form factor data, a user-defined form factor data is used -for getting the PDF from a small-angle scattering (SAS) data. This -behavior is enabled by specifying mode = sas in the configuration -file or in the command line tool. The pdfgets3 program by default -searches for a configuration named pdfgets3.cfg and -.pdfgets3.cfg in order, when no configuration file is specified.

    -

    Please refer to the tutorial section for a step-by-step processing of the example data files and for demonstration of the capabilities in PDFgetX3, PDFgetN3 and PDFgetS3.

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    Release notes

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    Version 2.1.0 – 2020-07-15

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    -

    Added

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      -

    • New mode sas for processing Small Angle Scattering data and -for using custom scattering factors.

      • -

    • qmax-pushes-qmin coupling of sliders in the tuneconfig tool.

      • -

    • New program pdfgets3 and IPython magic %pdfgets3.

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    Changed

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    • Software distribution format to a universal Python wheel.

      • -

    • tuneconfig dialog to access full Q-range with all qmin, qmax, and -qmaxinst sliders. Increased range for the rpoly slider.

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    Deprecated

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    • Software distribution in setuptools egg package.

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    Removed

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    • Support for Python 3.4.

      • -
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    Fixed

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    • Support backslash in the --find option path argument on Windows. -Both forward and back slashes are allowed on Windows, but other -platforms must use forward slash.

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    • Recipe for platform-dependent Anaconda package.

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    • Bogus test failure when installed in symlinked directory.

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    -
    -
    -

    Version 2.0.0 – 2018-11-02

    -
    -

    Added

    -
      -

    • New mode neutron for processing constant-wavelength -neutron scattering data.

      • -

    • Correction for an offset of diffractometer zero angle.

      • -

    • Configuration parameter twothetazero and command-line option ---twothetazero for position of the actual zero angle -in diffractometer degrees.

      • -

    • New program pdfgetn3 and IPython magic %pdfgetn3.

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    • Separate configuration file pdfgetn3.cfg for the pdfgetn3 program.

      • -

    • New sub-package diffpy.pdfgetx.apps for entry points to all programs.

      • -

    • Table of electron scattering factors from E. J. Kirkland, -Advanced Computing in Electron Microscopy.

      • -

    • The + operator for additive pattern groups when matching input files -with pdfgetx3 --find.

      • -

    • An optional slash-containing entry, e.g., dir/, to set the search path -for pdfgetx3 --find. Each pattern group may have one path entry which -affects the current and subsequent pattern groups. Pattern groups that -have only the path entry reuse the previous file patterns, for example, -dir1/ .dat$ + dir2/ + dir3/.

      • -

    • The dotfiles flag argument to functs.findfiles to also find -dot-starting files without an explicit pattern.

      • -

    • Support for Python 3.7.

      • -

    • Tutorial examples for constant-wavelength neutron diffraction data.

      • -
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    -

    Changed

    -
      -

    • Initialization arguments of PDFConfig to set initial configuration values.

      • -

    • path argument of functs.findfiles to give one search path instead -of a list of paths.

      • -

    • pdfgetx3 --find to search only the current directory and stop searching -in --datapath.

      • -

    • Improved PDF accuracy by removing repeated Q-grid interpolation.

      • -

    • Handling of dot files by pdfgetx3 --find and the functs.findfiles -function. The dotfiles are by default ignored unless explicitly selected -by a "^." pattern.

      • -

    • Return type of functs.findfiles from IPython SList to a simple list.

      • -

    • Rename camel case interactive functions to lowercase, i.e., to loaddata, -processfiles, clearsession.

      • -

    • Use config.datapath lookup in processfiles(filename).

      • -
    -
    -
    -

    Deprecated

    -
      -

    • Function cromermann.felectronatq for electron scattering -factors calculation using Mott-Bethe approximate formula.

      • -

    • IPython extension module diffpy.pdfgetx.ipy_pdfgetx3. -Use diffpy.pdfgetx.ipy_magics instead.

      • -

    • Camel case functions loadData, processFiles, clearSession.

      • -
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    Removed

    -
      -

    • Support for Python 2.6.

      • -

    • Processing of environment variable PDFGETX3PATH.

      • -

    • Support for IPython 0.x.

      • -

    • Obsolete variable __gitsha__ from the version module.

      • -

    • Processing of command line options in PDFConfig class.

      • -

    • Implicit loading of configuration files in PDFConfig instantiation.

      • -
    -
    -
    -

    Fixed

    -
      -

    • Import of all objects from matplotlib.pyplot into -an interactive session started by plotdata.

      • -

    • Inaccurate G interpolation when rstep is comparable to pi / qmax.

      • -

    • Lone anchor patterns ^, $ to match everything.

      • -
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    -
    -
    -

    Version 1.2 – 2018-01-12

    -
    -

    Added

    -
      -

    • Support for Python 3.4, 3.5, 3.6 in addition to Python 2.6 and 2.7.

      • -

    • Support for IPython 5.0 with preserved -compatibility with IPython 0.10 and later.

      • -

    • Support for matplotlib 2.0.

      • -

    • New option --log=LOG for the plotdata program to set logarithmic -scale for either of x or y axis. The plotdata() function learnt -a new log argument with the same purpose.

      • -

    • New argument ax for the plotdata() function that select a specific -matplotlib axis for plotting.

      • -

    • Support for Unicode filenames and values in the config -interactive variable.

      • -

    • Processing of parentheses and fractional stoichiometries in chemical -formulas as in Pb (Ti Zr)1/2 O3.

      • -

    • Explanatory error message when PDFgetX3 was installed for -unsupported Python.

      • -
    -
    -
    -

    Changed

    -
      -

    • The egg package file was enhanced to support all Python -versions. The software is now distributed in a single -egg rather than multiple eggs per each Python version.

      • -

    • PDFgetX3 option --force to take a boolean argument -(yes, no, true, etc.) or once. The configuration -parameter force can be likewise set to a bool or to -a string "once". This enables a safer one-time -overwrite of existing output files.

      • -

    • Plot labels to use a proper Unicode “Å” (Ångström) symbols. -The “Å” symbol is also used within units in output files.

      • -

    • The usecols argument of the loadData() function to also -accept scalars, open-end slice objects and string-denoted -slices such as "1:3" or "1:".

      • -

    • The plotdata program and plotdata() function to accept -open-end slices for the y-columns selection.

      • -

    • The IPython magic function %pdfgetx3 to set the _exit_code -variable as do generic shell commands run from IPython.

      • -

    • Inline documentation to use NumPy-style Napoleon format, -which is human readable and can be included in the manual.

      • -

    • Release scripts to build software package bundles and -documentation in binary-reproducible way.

      • -
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    -
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    Deprecated

    -
      -

    • Compatibility with Python 2.6.

      • -

    • Support for IPython 0.x.

      • -

    • Variable __gitsha__ in the version module which was renamed -to __git_commit__.

      • -
    -
    -
    -

    Removed

    -
      -

    • The hold argument of the plotdata() function, -because it was deprecated in matplotlib.

      • -

    • Support for multiple x-columns in plotdata program and -plotdata() function.

      • -

    • Import of all objects from numpy module into the interactive -session. NumPy is available under the np name instead.

      • -
    -
    -
    -

    Fixed

    -
      -

    • Avoid duplicate “.gr.gr” extension when pdfgetx3 is run -with option --output=f.gr.

      • -

    • Crash on loading custom configuration section from a local -file, when that section is missing in global configuration.

      • -

    • Missing checkbox in the tuneconfig dialog caused by matplotlib bug.

      • -
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deleted file mode 100644 index 010b4ef1..00000000 --- a/static_root/doc/pdfgetx/2.1.0/tutorial.html +++ /dev/null @@ -1,819 +0,0 @@ - - - - - - Tutorial — diffpy.pdfgetx 2.1.0 documentation - - - - - - - - - - - - - - - - - - - - - - -
    -

    Navigation

    - -
    - - - -
    -
    -
    -
    - -
    -

    Tutorial

    -

    In this tutorial we will convert several X-ray powder diffraction -patterns to corresponding PDFs. Open a terminal on a Unix-based system -or a Command Prompt on Windows and navigate to the examples -folder included with the PDFgetX3 distribution. The examples -folder can be found in the parent “doc” directory relative to this -document or another option is to just search your file system for -one of the input files mentioned below. -The example files are also available at -https://www.diffpy.org/doc/pdfgetx/2.1.0/pdfgetxn3-examples.zip.

    -
    -

    Nickel X-ray PDF

    -
    -

    predefined configuration file

    -

    Change to the Ni directory. The file named -ni300mesh_300k_nor_1-5.chi contains powder X-ray data -measured from nickel at the Advanced Photon Source beamline -6ID-D. The file contains two columns for the 2Θ scattering -angles and X-ray intensities. The second file -kapton_bgrd_300k_nor_2-3.chi contains the background -measurement, i.e., the intensities from an empty capillary. -Finally, the pdfgetx3.cfg contains a complete configuration -parameters for converting the powder pattern to a PDF. Since all -processing parameters are already defined in the configuration file, -the first PDF calculation is very simple and involves running the -pdfgetx3 program -with the powder data file as an argument:

    -
    $ pdfgetx3 ni300mesh_300k_nor_1-5.chi
-
    -
    -

    For the first run there should be no output on the screen, -however a new file, ni300mesh_300k_nor_1-5.gr should appear -in the work directory. -We can use the plotdata program, -included with this software, to plot the output data:

    -
    $ plotdata ni300mesh_300k_nor_1-5.gr
-
    -
    -

    This will open a graph window and start an IPython interactive session. -To exit and close the figure, type exit() on the IPython prompt. -Let’s run the program again, but now with a ---verbose=info -option, to show more details about the program actions.

    -
    $ pdfgetx3 --verbose=info ni300mesh_300k_nor_1-5.chi
-
-INFO:applying pdfgetx3 defaults
-INFO:set config.mode = xray
-INFO:searching for default config file /home/user/.pdfgetx3.cfg
-INFO:searching for default config file .pdfgetx3.cfg
-INFO:searching for default config file pdfgetx3.cfg
-INFO:loaded default config file pdfgetx3.cfg
-INFO:reset config.twothetazero = 0.0
-INFO:parsing config file section [DEFAULT]
-INFO:set config.dataformat = twotheta
-INFO:set config.backgroundfile = kapton_bgrd_300k_nor_2-3.chi
-INFO:set config.outputtypes = gr
-INFO:set config.wavelength = 0.142774
-INFO:set config.composition = Ni
-INFO:set config.qmaxinst = 26.5
-INFO:set config.qmax = 26.0
-INFO:set config.rmin = 0.0
-INFO:set config.rmax = 30.0
-INFO:set config.rstep = 0.01
-INFO:finished parsing config file
-INFO:processing command line options
-INFO:set config.verbose = info
-INFO:finished with command line options
-INFO:using 1 input files from the command line.
-INFO:configuring PDFGetter mode 'xray'
-INFO:calling config_xray
-INFO:started PDF processing.
-INFO:processing 'ni300mesh_300k_nor_1-5.chi'
-INFO:resolved output file '' as 'ni300mesh_300k_nor_1-5.gr'
-WARNING:ni300mesh_300k_nor_1-5.gr already exists.
-WARNING:Use "--force=yes" or "--force=once" to overwrite.
-INFO:elapsed time: 0.095
-
    -
    -

    Here we can see what configuration files are searched, which of them -get loaded and what are the effective values of the processing -parameters. Unless the --verbose option is in effect, the -program will show only messages that have either WARNING or ERROR -importance. The warning line above indicates no output has been -written, because that file already exists. This safety check can be -overruled with the --force=yes option, upon -which pdfgetx3 would overwrite any existing files.

    -

    PDFgetX3 output files start with a header that lists all the processing -parameters and can be used as a valid configuration file with the --c option. Another option, --plot=[iq,sq,fq,gr] turns on plotting of the final PDF or of some other result. A -side effect of the --plot option is that pdfgetx3 starts in -an interactive mode, so the user can manipulate or save the plots. To -put it all together, we are now going to redo the original PDF and plot -its reduced total scattering function F(Q) and the PDF curve G(r). This -time the chi file is not necessary, because the input file is already -listed in the gr file that is now used as a custom configuration:

    -
    $ pdfgetx3 -c ni300mesh_300k_nor_1-5.gr --plot=fq,gr
-
-WARNING:ni300mesh_300k_nor_1-5.gr already exists.
-WARNING:Use "--force=yes" or "--force=once" to overwrite.
-
-Variables related to PDF processing:
-
-pdfgetter    -- PDFGetter used for calculation.
-config       -- configuration data used by PDFGetter.
-                See config.inputfiles for a list of inputs.
-iraw         -- matrix of input raw intensities with 2 rows per file.
-iq sq fq gr  -- intermediate results per each input file stored
-                as matrix rows.
-
-Functions:
-
-tuneconfig   -- dynamically tune configuration variables.
-processfiles -- process specified data files.
-clearsession -- clear all elements from the inputfiles, iraw,
-                iq, sq, fq and gr variables.
-plotdata     -- plot all or selected columns from a text data file.
-loaddata     -- load all or selected columns from a text data file.
-findfiles    -- search for files matching the specified patterns.
-
-Use "%pdfgetx3" for a fresh run without exiting IPython.
-In [1]:
-
    -
    -

    This will open a plot figure similar to

    -_images/nickelfqgr.png -

    Because of the interactive mode implied by plotting, -the program enters an IPython session. -The IPython environment is preloaded with several extra functions -and variables related to the PDF processing. For example, the -config variable stores all the configuration parameters, -and its content can be displayed with the print() -function as

    -
    In [1]: print(config)
-
-configfile = ni300mesh_300k_nor_1-5.gr
-configsection = DEFAULT
-dataformat = twotheta
-...
-qmax = 26.0
-...
-
    -
    -

    The processfiles() function allows to redo the -whole calculation and plotting process for additional input files or -for new parameter values. To plot the F(Q) and G(r) -curves calculated at Qmax = 22 Å-1, we can call -processfiles() and pass it a keyword argument for -the new qmax as follows:

    -
    In [2]: processfiles(qmax=22)
-
-# the qmax parameter was updated to a new value, thus
-In [3]: config.qmax
-Out[3]: 22
-
    -
    -

    There should be now two lines in each plot axis corresponding to -the results at Qmax equal 26 and 22 Å-1. To exit the program, -type exit().

    -
    -
    -

    processing from scratch

    -

    We have already encountered the command-line option -c -for specifying a custom configuration file. A special argument “NONE”, -will make pdfgetx3 ignore any configuration files and start up in a -default state. We can use this feature to process the nickel PDF as if -we did not have any configuration file:

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi
-
-WARNING:Nothing to do, use "-t" or "--plot" options.
-ERROR:Configuration error: wavelength not specified.
-ERROR:See "--help" for more hints.
-
    -
    -

    There is an error, for the wavelength is necessary to convert -the scattering angle 2Θ to momentum transfer Q. The -X-ray wavelength was 0.142774 Å, which can be passed with the --w, --wavelength option:

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774
-
-...
-ERROR:Configuration error: Chemical composition not known.
-ERROR:See "--help" for more hints.
-
    -
    -

    There is still an error. The PDF calculation needs an average -X-ray scattering factor of the material, which is obtained from -sample chemical composition. The composition can be specified -with the --composition option. The example -below uses a “\” character to indicate the command continues -on the next line. Such syntax works in Unix terminals, but -on Windows the command has to be typed all on a single line:

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \
-           --composition=Ni
-
-WARNING:Nothing to do, use "-t" or "--plot" options.
-...
-
    -
    -

    There was no error message this time, but the program complains -about a lack of action. The pdfgetx3 program does not write any results -unless instructed by the -t, --outputtypes option. -The outputtypes option recognizes the following result types: -“iq”, “sq”, “fq”, “gr”. One or more of these type strings, -separated by a comma, can be included with the --t option, which will produce the corresponding -output files. An empty string, such as -t "", or -t NONE -may be used to clear any outputtypes defined in the configuration file, -and avoid the unseemly file-exists warnings.

    -

    At this point, we will not write any output files, but will use the ---plot option to display the calculated curves. The ---plot accepts the same arguments as outputtypes, so to -display the F(Q) and G(r) curves we shall run

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \
-           --composition=Ni --plot=fq,gr
-
-WARNING:qmaxinst reset to last nonzero point qmaxinst=28.0865680161
-WARNING:qmax reset to the data boundary qmaxinst=28.0865680161
-
    -
    -

    which should open the following plot window:

    -_images/nickelfqgrnoisy.png -

    The graphs look terrible. The PDF is very noisy and the F(Q) curve -shows a sudden break at about 27 Å-1. What happened? The powder -intensities are inaccurate at a very top of the detector angular range. -The interactive session is setup with -iraw, iq, sq, -fq, gr -variables for the original raw data and intermediate results. We -are going to plot the “iq” variable that has the input intensities -resampled on the Q grid. The matplotlib function -clf() clears the figure, -the iq variable is a two-row matrix with Q and I rows, and the -axis() -function lets us zoom to a given range:

    -
    In [1]: clf()
-In [2]: plot(iq[0], iq[1])
-Out[2]: [<matplotlib.lines.Line2D at 0x3e20f50>]
-In [3]: axis([20, 29, 0, 3000])
-Out[3]: [20, 29, 0, 3000]
-
    -
    -

    The graph shows a sudden drop in the raw intensities at 27 Å-1. -The qmaxinst variable defines a Q cutoff for a meaningful -instrument intensities and, to be on a safe side, we are going to set -it to 26.5 Å-1

    -
    In [4]: processfiles(qmaxinst=26.5)
-WARNING:qmax reset to the data boundary qmaxinst=26.5
-
    -
    -

    The updated curves looks reasonable without any oscillations and -breakpoints. The tuneconfig() function provides a -GUI-driven way for visualizing the processing parameters and their -effect on the results. Type tuneconfig() to execute the function, -which should open a new window with several sliders. Try to move -different sliders and see how do the F(Q) and G(r) curves change. -The rpoly parameter controls the degree of data-correction -polynomial and is an approximate low-r bound of reliable G -values. Once the parameters are tuned, they may be set to -exact values. We will also turn on the writing of the G(r) -curve and save it to an output file nicmd.gr:

    -
    In [14]: config.qmax = 26
-In [15]: config.outputtypes = 'gr'
-In [16]: config.output = 'nicmd'
-In [17]: processfiles()
-
    -
    -
    -
    -
    -

    Platinum X-ray series

    -

    PDFgetX3 has been designed to handle large series of data files. -With the fast area-detectors it is easy to measure hundreds of X-ray -patterns in a time or temperature series. Normally, these input -files need to be entered as command line arguments to the pdfgetx3 -program. This is usually no problem with Unix-like shells, which -expand filename patterns to a list of matching files. -However, such file generation is in general not available on Windows. -The input file names tend to include scan numbers which are useful -for selecting desired data, yet even with Unix shells it is -difficult to match a range of scan numbers -(z-shell being a notable exception).

    -
    -

    matching input files

    -

    The pdfgetx3 program includes a built-in function for finding -a set of input files. The command line arguments are normally taken as -input file names. However, if the -f, --find option is -present, the arguments are understood as patterns and the program looks -for files that match ALL of them. Another option --l, --list makes pdfgetx3 print out the matching files -without any other action, which can be used to verify if the patterns -match intended files.

    -

    We will try out this file search on platinum example files. Open a -terminal and navigate to the Pt directory. There should be a -series subdirectory with 6 chi files indexed from 903 to 908. -At first, let’s stay in the Pt directory and run the following -command

    -
    $ pdfgetx3 --list --find
-
-Pt_bulk-00055-pdfgetx2.gr
-Pt_bulk-00055-pdfgetx3.gr
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-pdfgetx3.cfg
-plotpdfcomparison.py
-
    -
    -

    Without any patterns the file search matches all files in the current -directory. Now let’s try to add name patterns. There are few special -patterns, for example ^ matches at the beginning of the filename, $ at the end and <N-M> matches a range of integer values from -N to M. The patterns containing ^$<> need to be quoted as -these characters have special meaning in the shell. Here are some -examples how it works.

    -

    Filenames containing “y”:

    -
    $ pdfgetx3 --list --find y
-empty_capillary-00032.chi
-plotpdfcomparison.py
-
    -
    -

    Filenames that containing both “y” and “chi”, here we use the -options --list and --find in an abbreviated -form -l and -f:

    -
    $ pdfgetx3 -lf y chi
-empty_capillary-00032.chi
-
    -
    -

    Filenames that start with “e”:

    -
    $ pdfgetx3 --list --find "^e"
-empty_capillary-00032.chi
-
    -
    -

    Filenames that contain character “2”:

    -
    $ pdfgetx3 --list --find 2
-Pt_bulk-00055-pdfgetx2.gr
-empty_capillary-00032.chi
-
    -
    -

    Filenames that contain numeric value “2”:

    -
    $ pdfgetx3 -lf "<2>"
-Pt_bulk-00055-pdfgetx2.gr
-
    -
    -

    The special argument + starts a new group of patterns to -generate extra files when they cannot be all covered by -a single set of patterns. For example, to match files that -contain contain both “bulk” and “chi” substrings and then -also those that have “empty” and “chi” in their names, use:

    -
    $ pdfgetx3 -lf bulk chi + empty chi
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-
    -
    -

    When pattern groups overlap the resulting matches are -made unique and each file is listed only once

    -
    $ pdfgetx3 -lf bulk chi + chi
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-
    -
    -
    -
    -

    data search path

    -

    Each group of PDFgetX3 patterns can have one entry containing -forward slash “/” to specify a non-current path that is searched -for input files. The path specification affects the current and -the following pattern groups unless they provide their own path. -The chi files numbered “903” to “905” and “908” from the -series subdirectory can be therefore matched using

    -
    $ pdfgetx3 -lf series/ "<903-905>" + 908
-series/Pt_bulk_ramp03-00903.chi
-series/Pt_bulk_ramp03-00904.chi
-series/Pt_bulk_ramp03-00905.chi
-series/Pt_bulk_ramp03-00908.chi
-
    -
    -

    The current directory can be selected using ./

    -
    $ pdfgetx3 -lf series/ 903 + ./ bulk chi
-series/Pt_bulk_ramp03-00903.chi
-Pt_bulk-00055.chi
-
    -
    -

    When additional pattern groups contain only the path -argument, they reuse the existing set of patterns. The -“.chi”-ending files in the current and series -directories can be thus found using

    -
    $ pdfgetx3 -lf ".chi$" + series/
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-series/Pt_bulk_ramp03-00903.chi
-series/Pt_bulk_ramp03-00904.chi
-series/Pt_bulk_ramp03-00905.chi
-series/Pt_bulk_ramp03-00906.chi
-series/Pt_bulk_ramp03-00907.chi
-series/Pt_bulk_ramp03-00908.chi
-
    -
    -
    -
    -

    output file names

    -

    By default the output files are saved in the current directory. The -output path, can be changed with the -o, --output option. -The -o recognizes several tokens that are replaced with -parts of the input file name, for example, “@b” expands to an -extension-stripped base name. In similar faction, “@o” is replaced -with the output type extension. Thus to generate PDFs for all files -in the series directory and save them in the -series-gr subfolder do

    -
    $ pdfgetx3 --find series/ "<900-910>.chi" --output=series-gr/@b.@o
-
    -
    -

    The extension “.@o” is automatic when not included anywhere in the -output file name. Thus to process the Pt series at Qmax = 18 Å-1 -while saving the results in the same folder, but with a “_qmax18” suffix -in their filenames do

    -
    $ pdfgetx3 --find series/ "<900-910>.chi" --qmax=18 -o series-gr/@b_qmax18
-
    -
    -

    For input file Pt_bulk_ramp03-00903.chi the -o option -above expands to output path series-gr/Pt_bulk_ramp03-00903_qmax18.gr. -The series-gr directory should now contain 12 “gr” files, -6 of them processed at Qmax = 27 Å-1 as given by configuration -file and 6 others processed at Qmax = 18 Å-1.

    -
    -

    See also

    -

    -o, --output for a list of output tokens

    -
    -
    -
    -
    -

    Interactive tuning of parameters

    -

    One of the most powerful features of PDFgetX3 is the ability to tune -PDF processing parameters in an interactive mode and immediately -visualize their effect on the results. To demonstrate this feature, -navigate to the Ni directory in the shell and process -the nickel PDF while plotting the F(Q) and G(r) curves. -Because of plotting the program will open an interactive IPython -session. The tuning mode can be then entered by calling the -tuneconfig() -function from the IPython environment

    -
    $ pdfgetx3 --plot=fq,gr ni300mesh_300k_nor_1-5.chi
-...
-In [1]: tuneconfig()
-
    -
    -

    The -tuneconfig() -function will by default add a second set of live lines -for the plotted curves and open a GUI dialog with sliders for the -tunable process parameters. Changing any slider would immediately -recalculate the PDF and update live lines in the plot.

    -_images/tunenickelfqgr.png -

    The constant data scale check-box rescales the result curves to a -constant maximum value. This is useful for assessing if a parameter -change produces different curve shape or if it just rescales the -results. The tunable parameters are described in the -PDF parameters section. -Only the active parameters are displayed in the tuneconfig GUI, -thus there would be no slider for the bgscale parameter -if PDF has been processed without any background data.

    -

    By default the -tuneconfig() -function displays the same curves as -specified by the --plot option, however it can be -configured to show arbitrary intermediate results or even visualize -selected steps in the PDF processing. We shall demonstrate this by -showing a live-plot of the polynomial correction together with the final -PDF. At first, we shall use the describe() method of the -pdfgetter() object to print out the chain of -transformations involved in the PDF processing and obtain a reference to -the transformation object t4 that applies the polynomial correction. -The transformation object can be then included in a list of plot -identifiers that are passed to the tuneconfig() function

    -
    $ pdfgetx3 -i ni300mesh_300k_nor_1-5.chi
-...
-Use "%pdfgetx3" for a fresh run without exiting IPython.
-
-In [1]: fig, ax = subplots(2)
-In [2]: pdfgetter.describe()
-0   TransformTwoThetaToQA
-    convert x data from twotheta to Q in 1/A
-1   TransformQGridRegular
-    Remove the data outside the (qmin, qmaxinst) range
-2   TransformBackground
-    subtract background intensity
-3   TransformXrayASFnormChris
-    scale and normalize intensities by x-ray scattering factors
-4   TransformSQnormRPoly
-    Normalize S(Q) by fitting a polynomial
-5   TransformSQToFQ
-    Convert S(Q) to F(Q).
-6   TransformFQgrid
-    Resample F(Q) to a regular grid suitable for FFT
-7   TransformFQToGr
-    Convert F(Q) to G(r).
-In [3]: t4 = pdfgetter.getTransformation(4)
-In [4]: tuneconfig([t4, 'gr'], axeslist=ax)
-In [5]: ax[0].legend(loc=2)
-
    -
    -

    The subplots() function above -is to create a new figure with 2 axes on top of each other. -Overall, the code above should display the following plot -and a GUI window:

    -_images/tunenickelt4gr.png -

    The tuning can be finished by clicking the Done button or closing the -tuneconfig GUI window. The parameter values can be thereafter adjusted -to a rounded values by setting an attribute of the config -object, for example:

    -
    In [5]: config.bgscale = 1.5
-
    -
    -

    Finally, to save the new results, we shall first confirm -outputtypes have been correctly set and then use the -processfiles() function to redo the calculations, plots and -data output for the updated configuration. Note that the -processfiles() function accepts keyword arguments for -configuration parameters. This is used at line In [8] to -turn on the force flag and is in effect a shortcut -for an extra config.force = True statement.

    -
    In [6]: config.outputtypes
-Out[6]: ['gr']
-In [7]: processfiles()
-WARNING:ni300mesh_300k_nor_1-5.gr already exists.
-WARNING:Use "--force=yes" or "--force=once" to overwrite.
-In [8]: processfiles(force=True)
-
    -
    -

    ni300mesh_300k_nor_1-5.gr was successfully saved at an -updated configuration for there were no warnings after the last call.

    -
    -
    -

    Neutron PDF

    -

    This example illustrates PDF extraction from -neutron powder data using pdfgetn3. -Navigate to the n-Sapphire directory in the shell. -The sapphire755.dat file contains powder diffraction data from -sapphire (α-Al2O3) -measured at the constant-wavelength PEARL instrument -at the Delft University of Technology. -The pdfgetn3.cfg configuration file specifies -processing parameters such as wavelength, -twothetazero, composition, and mode.

    -

    To extract the sapphire neutron PDF run

    -
    $ pdfgetn3 --verbose=info sapphire755.dat
-
-INFO:applying pdfgetn3 defaults
-INFO:set config.mode = neutron
-INFO:searching for default config file /home/user/.pdfgetn3.cfg
-INFO:searching for default config file .pdfgetn3.cfg
-INFO:searching for default config file pdfgetn3.cfg
-INFO:loaded default config file pdfgetn3.cfg
-INFO:reset config.twothetazero = 0.0
-INFO:parsing config file section [DEFAULT]
-INFO:set config.dataformat = twotheta
-INFO:set config.backgroundfile =
-INFO:set config.outputtypes = fq, gr
-INFO:set config.mode = neutron
-INFO:set config.wavelength = 1.0989
-INFO:set config.twothetazero = -0.38
-INFO:set config.composition = Al2O3
-INFO:set config.qmaxinst = 11.2
-INFO:set config.qmax = 11.2
-INFO:set config.rmin = 0.0
-INFO:set config.rmax = 20.0
-INFO:set config.rstep = 0.01
-INFO:finished parsing config file
-INFO:processing command line options
-INFO:set config.verbose = info
-INFO:finished with command line options
-INFO:using 1 input files from the command line.
-INFO:configuring PDFGetter mode 'neutron'
-INFO:calling config_neutron
-INFO:started PDF processing.
-INFO:processing 'sapphire755.dat'
-INFO:resolved output file '' as 'sapphire755.fq'
-INFO:written outpufile sapphire755.fq
-INFO:resolved output file '' as 'sapphire755.gr'
-INFO:written outpufile sapphire755.gr
-INFO:elapsed time: 0.097
-
    -
    -

    This will produce two files sapphire755.fq, sapphire755.gr -for the F(Q) and G(r) functions. -To compare them with expected results use

    -
    $ plotdata sapphire755-expected.fq sapphire755.fq
-$ plotdata sapphire755-expected.gr sapphire755.gr
-
    -
    -
    -
    -

    Fit twothetazero

    -

    For a good quality PDF it is essential to use powder patterns with -accurate values of Q. Some instruments may produce spectra with -a slightly offset scattering angle 2Θ which -causes inaccurate Q and a noticeably worse PDF. -In this example we fit a constant-wavelength neutron PDF from nickel -together with the twothetazero correction parameter for -diffractometer offset. -The procedure can be used to calibrate the zero correction from -a standard sample and then use it for subsequent PDF extractions. -The protocol can be also applied to fit zero correction in -a full-fledged PDF refinement in case -the zero offset may change for different samples.

    -

    This tutorial requires either Linux or Mac OS X platforms, -because the PDF fitting is conducted with -diffpy.cmi, -which is not yet available for Windows. -If diffpy.cmi is not yet installed, -we recommend to use Anaconda Python and set up a dedicated -Anaconda environment nbcmi for this tutorial. -This can be accomplished using the following steps:

    -
    $ conda create -n nbcmi -c diffpy python=2 diffpy.cmi
-$ conda activate nbcmi
-$ pip install path/to/diffpy.pdfgetx-VERSION.whl
-
    -
    -

    When these prerequisites are in place, -change to the n-twothetazero-fit directory -and open the self documented Jupyter notebook as follows

    -
    $ jupyter notebook fit-twothetazero.ipynb
-
    -
    -

    The notebook sets up and executes several PDF refinements and -compares the results from fits on uncorrected data and with -a fitted twothetazero. -After running all cells the notebook should produce similar graphs -as in the figure below.

    -
    -_images/twothetazerofit.svgz

    Refinement of nickel neutron PDF for (a) uncorrected data -and (b) with a refined zero correction. -The extracted PDFs are plotted as blue circles, -simulated PDFs as red lines and -the difference is plotted offset in green below.

    -
    -

    The final refined zero offset in the notebook should be approximately -0.36°. -The correction produces experimental PDF with a remarkably better fit -residual Rw which is lowered from (a) 0.18 to (b) 0.05.

    -
    -
    -

    Small-angle-scattering PDF (sasPDF)

    -

    Here we illustrate how to extract a PDF from small-angle-scattering (sas) data using pdfgets3. -To do this, navigate to the Au_DNA_NPA directory in your terminal. -In this folder, you will find Au_DNA_NPA.chi and -Au_DNA_FF.chi files which correspond to diffraction data from -DNA-capped Au nanoparticle assemblies and from a DNA-capped Au -nanoparticle colloidal solution respectively. Those two files were -measured at X21 beamline, NSLS and published in D. Nykypanchuk, M. M. -Maye, D. van der Lelie, and O. Gang, Nature 451, 549 (2008).. We thank Prof. Oleg Gang (Columbia University) for sharing this data. The pdfgets3.cfg -configuration file specifies processing parameters such as formfactorfile (required by sas mode), qmin, qmax, and mode.

    -

    To extract the PDF of DNA-capped DNA nanoparticle assemblies

    -
    $ pdfgets3 --verbose=info Au_DNA_NPA.chi
-
-INFO:applying pdfgets3 defaults
-INFO:set config.mode = sas
-INFO:searching for default config file /home/user/.pdfgets3.cfg
-INFO:searching for default config file .pdfgets3.cfg
-INFO:searching for default config file pdfgets3.cfg
-INFO:loaded default config file pdfgets3.cfg
-INFO:reset config.twothetazero = 0.0
-INFO:parsing config file section [DEFAULT]
-INFO:set config.dataformat = QA
-INFO:set config.backgroundfile =
-INFO:set config.datapath = []
-INFO:set config.formfactorfile = Au_DNA_FF.chi
-INFO:set config.output =
-INFO:set config.outputtypes = fq, gr
-INFO:set config.force = yes
-INFO:set config.mode = sas
-INFO:set config.rpoly = 240.605
-INFO:set config.qmaxinst = 0.075
-INFO:set config.qmin = 0.01
-INFO:set config.qmax = 0.072
-INFO:set config.rmin = 100.0
-INFO:set config.rmax = 5000.0
-INFO:set config.rstep = 1.0
-INFO:set config.plot = iq, fq, gr
-INFO:set config.verbose = info
-INFO:finished parsing config file
-INFO:processing command line options
-INFO:set config.verbose = info
-INFO:finished with command line options
-INFO:using 1 input files from the command line.
-INFO:configuring PDFGetter mode 'sas'
-INFO:calling config_sas
-INFO:started PDF processing.
-INFO:processing 'Au_DNA_NPA.chi'
-INFO:resolved output file '' as 'Au_DNA_NPA.fq'
-INFO:written outpufile Au_DNA_NPA.fq
-INFO:resolved output file '' as 'Au_DNA_NPA.gr'
-INFO:written outpufile Au_DNA_NPA.gr
-INFO:elapsed time: 0.947
-
    -
    -

    This will save two files Au_DNA_NPA.fq, Au_DNA_NPA.gr in the same directoy for the F(Q) and G(r) functions. This also plots F(Q) and G(r) functions in a pop-up window and the processing parameters such as rpoly or so may be tuned interactively by issuing command tuneconfig() in the IPython session as discussed above.

    -
    -
    - - -
    -
    -
    - -
    -
    -
    -

    Navigation

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The configuration file follows a simple "varname=value" syntax, -any lines starting with "#" are ignored as comments. - -The configuration file has several sections marked as ``[SECTIONNAME]``. -The ``[DEFAULT]`` section is mandatory and it contains the default -global settings. Any other sections are optional and they are applied -only when selected with the :option:`-s, --section <-s>` option on the -command line. Thus :: - - pdfgetx3 --config=test.cfg --section=nacl - -would read the parameters from the ``[nacl]`` section after reading the -defaults. Having several sections in the configuration -file is useful when there are multiple measurements that share most of -the parameters, but differ in a few of them, for example in chemical -composition. The configuration file can then contain sections per each -sample that define only the composition, while all other parameters are -specified just once in the global DEFAULT section. - - -Input files ------------------------------------------------------------------------- - -PDFgetX3 and PDFgetN3 accept input powder diffraction data -in the form of two-column text file, -where the first column x is either the scattering angle -|twotheta| in degrees, momentum transfer *Q* in inverse nanometers or *Q* -in inverse ångströms. The second column y contains the corresponding -scattered intensities normalized per unit solid angle. The actual type -of the x-values is identified by the :confval:`dataformat` parameter. -The input files may contain header with comments or metadata, and the -actual data are read from the first long section of numerical values. - -The input files are usually passed as command-line arguments to -:program:`pdfgetx3` or :program:`pdfgetn3` programs and must be paths -accessible from the current working directory. - -Input files can be also defined by setting the :confval:`inputfile` -value in the configuration file. The :option:`-d, --datapath <-d>` -option can be then used to provide additional data directories to -search for these inputs and for the :confval:`backgroundfile`. -This is to support configuration files located in a different -directory than the data. - -When the :option:`--find <-f>` option is active, the pdfgetx3 arguments -are understood as filename patterns and the input files are found -in the current or specified directory. - - -Output files ------------------------------------------------------------------------- - -PDFgetX3 and PDFgetN3 can produce up to four different output data files: - -* .iq -- |IQ|, the background-corrected - intensities sampled on a regular *Q*-space grid in inverse ångströms, - -* .sq -- |SQ|, the total scattering structure function, - with intensities normalized by average scattering factors and - corrected by a polynomial fit, - -* .fq -- |FQ|, the reduced structure function equal to *Q*\ (|SQ| - 1), - -* .gr -- |Gr|, the resultant PDF, where the first column is the - separation *r* in ångströms and the second is the function *G* in - Å\ :sup:`-2`. - -You can specify what output files should be produced by setting the -:confval:`outputtypes` parameter in the configuration file or by -passing the :option:`-t, --outputtypes <-t>` on the command line. - -The header of all output files contains the parameter values that were -used in the calculation and thus it is by itself a valid configuration -file. When passed as an argument to the :option:`--config <-c>` option, -the PDFgetX3 will reproduce the previous calculation. diff --git a/static_root/doc/pdfgetx/2.1.1/_sources/index.rst.txt b/static_root/doc/pdfgetx/2.1.1/_sources/index.rst.txt deleted file mode 100644 index c7bf373e..00000000 --- a/static_root/doc/pdfgetx/2.1.1/_sources/index.rst.txt +++ /dev/null @@ -1,38 +0,0 @@ -.. PDFgetX3 documentation master file, created by - sphinx-quickstart on Tue Sep 21 18:35:11 2010. - You can adapt this file completely to your liking, - but it should at least contain the root `toctree` directive. - -######################################################################## -diffpy.pdfgetx -######################################################################## - -User manual for PDFgetX3, PDFgetN3, PDFgetS3 and Python package diffpy.pdfgetx. - -| Release |release| -| |today| - -======================================================================== -Table of contents -======================================================================== - - -.. toctree:: - :maxdepth: 2 - - intro - install - quick-start - tutorial - files - interact - options - plotdata - release - -======================================================================== -Indices -======================================================================== - -* :ref:`genindex` -* :ref:`search` diff --git a/static_root/doc/pdfgetx/2.1.1/_sources/install.rst.txt b/static_root/doc/pdfgetx/2.1.1/_sources/install.rst.txt deleted file mode 100644 index df692603..00000000 --- a/static_root/doc/pdfgetx/2.1.1/_sources/install.rst.txt +++ /dev/null @@ -1,146 +0,0 @@ -Installation -======================================================================== - -.. include:: abbreviations.txt - -Software requirements ------------------------------------------------------------------------- - -This software is written in Python programming language, therefore -you must have Python 3.8, 3.7, 3.6, 3.5 or 2.7 installed. In addition, -the following third-party Python libraries are also required: - -* pip - Python package installer -* setuptools - tools for installing Python packages -* six - Python 2 and 3 compatibility library -* NumPy - library for scientific computing with Python -* matplotlib - Python plotting library -* IPython - enhanced interactive Python shell - -Standard Python releases can be obtained from -https://www.python.org/downloads. -The third-party libraries can be found at the -`Python Package Index `__ -or using any Internet search engine. - -Another more convenient option is to obtain one of the science-oriented -Python distributions such as -`Anaconda Python`_, -`Enthought Canopy `_ or -`PythonXY `_, -These distributions already include all the necessary libraries, so the -required Python software can be all installed in one step. - -On Linux operating systems the third-party libraries are usually -included in a system software repository. For example on an -Ubuntu Linux computer the software dependencies can be all installed -with a single shell command :: - - sudo apt-get install \ - python3-pip python3-setuptools python3-six \ - python3-numpy python3-matplotlib ipython3 - -This may be, of course, as well accomplished using the GUI -driven Synaptic package manager. Other Linux -distributions may use different software management tools, -but the names of the necessary packages should be very similar -to those above. - -On Windows operating system, it may be necessary to add the -``C:\Python37`` directory and the scripts directory -``C:\Python37\Scripts`` to the system :envvar:`!PATH`. Some Python -distributions already do so as a part of their installation process. The -easiest way to check is to start the :program:`Command Prompt`, type -there ``python`` and see if this starts the Python interpreter. - -Alternately, if you want to run the diffpy.pdfgetx software with a specific version of Python, -we recommend using a virtual environment, such as ``conda``. For example, if you have Anaconda Python installed, -you can create a conda virtual environment to install the software as follow :: - - conda create --name pdfgetx_env numpy matplotlib ipython --python=3.8 - -You can choose the name of the environment and python version as you desire. You can choose any of the -supported Python versions. Then, activate this environment and follow the instructions in the -next section to install the software :: - - conda activate pdfgetx_env - -Installation ------------------------------------------------------------------------- - -The diffpy.pdfgetx software is distributed as a Python wheel file, -which can be obtained from the -`Columbia Technology Ventures -`__. -Once all the required software is in -place, start the command prompt on Windows or a Unix terminal on Linux -or Mac, navigate to the directory that contains the wheel file and -execute the following command:: - - pip install ./diffpy.pdfgetx-VERSION.whl - -Here VERSION needs to be replaced to match the actual filename. It is -critical that pip installer is from a supported Python version otherwise -the program would not work. On Linux and Mac operating systems the installation may need to run with root user privileges, for example, by prepending ``sudo`` to the command line above. If root access is not available, use the ``pip install`` options :option:`!--user` or :option:`!--prefix` to install the software to a user-writable directory. - -The package provides three programs for PDF conversion, :program:`pdfgetx3`, :program:`pdfgetn3` and :program:`pdfgets3`. To check if they are correctly installed run :: - - pdfgetx3 --version - pdfgetn3 --version - pdfgets3 --version - -This should display the software version, which should agree -with the VERSION string in the wheel package name. -The installation also includes a :program:`plotdata` -command for an easy plotting of text data files. To verify -if plotdata works, run the ``plotdata --version`` command. -Finally, a comprehensive test of the installed software can -be executed using :: - - python -m diffpy.pdfgetx.tests.run - -.. note:: - - Older versions of diffpy.pdfgetx use Python egg format - instead of Python wheel. - To install these use the easy_install command as follows:: - - python -m easy_install ./diffpy.pdfgetx-VERSION.egg - -.. index:: %pdfgetx3 IPython magic -.. index:: %pdfgetn3 IPython magic -.. index:: %pdfgets3 IPython magic - -IPython magic command ------------------------------------------------------------------------- - -These instructions are intended for `IPython`_ users who would like to -integrate PDFgetX3, PDFgetN3 and PDFgetS3 into their IPython environment. If -you don't plan to customize IPython in such way you can safely skip -this paragraph. - -When pdfgetx3 or pdfgetn3 or pdfgets3 is run in interactive mode, it start -IPython interactive shell and define an extra ``%pdfgetx3``, ``%pdfgetn3`` and ``%pdfgets3`` magic commands within the IPython session. The IPython -magic commands are not valid Python code, but work in a similar -fashion as standard shell commands. The ``%pdfgetx3``, ``%pdfgetn3`` and ``%pdfgets3`` magics can be thus used with the same options and arguments as if run from the shell. This is useful for processing more files, while -preserving all plots or variables that were already created -in an IPython session. - -The ``%pdfgetx3``, ``%pdfgetn3`` and ``%pdfgets3`` magic commands can be defined -permanently so they are available in all IPython sessions. To set -this up - -#. find the ``profile_default/ipython_config.py`` file and open it - in a text editor. If that file does not exists, - create it first by executing :: - - ipython profile create - -#. navigate to the paragraph that contains the - :py:data:`!c.InteractiveShellApp.extensions` and add there - the following line :: - - c.InteractiveShellApp.extensions = ['diffpy.pdfgetx.ipy_magics'] - - There must be no leading indent, i.e., the text must start at the - very first column. diff --git a/static_root/doc/pdfgetx/2.1.1/_sources/interact.rst.txt b/static_root/doc/pdfgetx/2.1.1/_sources/interact.rst.txt deleted file mode 100644 index 0d4fb746..00000000 --- a/static_root/doc/pdfgetx/2.1.1/_sources/interact.rst.txt +++ /dev/null @@ -1,154 +0,0 @@ -Interactive mode -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 -.. py:currentmodule:: _interactive_ - -The interactive mode is activated by using either the -:option:`-i, --interact <-i>` option or a non-empty -:option:`--plot <-p>` option. In the interactive mode -the program starts an `IPython`_ interactive shell and pre-loads several -functions and variables related to the PDF calculation. It also defines -IPython commands ``%pdfgetx3`` and ``%pdfgetn3``, which can be used with -the same syntax as the :program:`pdfgetx3` and :program:`pdfgetn3` in -system shell. -The interactive session is also initialized with all functions from the -:py:mod:`matplotlib.pyplot` module for convenient plotting. -The functions and variables related to PDF processing are: - -.. py:function:: pdfgetter(x=None, y=None, filename='', **kwargs) - - Instance of the :py:class:`!PDFGetter` class which serves as a - low-level function that calculates the PDF. This is a callable - object, which takes as an argument a pair of input arrays for - (*Q*, intensity) or (|twotheta|, intensity) depending on - :confval:`dataformat`. It can be also called with a keyword - argument ``filename=FILE``, which would read the input arrays - from the specified file. When called with no arguments, - it calculates PDF from the last input data. - - :parameters: - * **x** (*numpy.ndarray, optional*) -- - The *Q* or |twotheta| values in powder diffraction pattern. - - * **y** (*numpy.ndarray, optional*) -- - The scattered intensities in powder diffraction pattern - - * **filename** (*str, optional*) -- - The text data file for loading the `x`, `y` values when - they are not specified. - - * **kwargs** (*misc, optional*) -- - Extra keyword arguments that are applied to - the :data:`!config` object, for example ``qmax=20``. - - :return: - A pair of output arrays *(r, G)*. - -.. interactvar:: config - - Instance of the :py:class:`!PDFConfig` class that stores the - :ref:`parameters and input files ` for the program. - Use ``print(config)`` to display the current configuration values. - This is the same object as :data:`!pdfgetter.config`. Configuration - may be changed by setting a respective attribute of the - :interactvar:`!config` object, for example:: - - In [1]: config.qmax = 21 - - The :py:data:`!config` values may be also changed by calling the - :py:func:`pdfgetter` or :py:func:`processfiles` function with a - corresponding keyword argument, for example - ``processfiles(qmax=20, force="once")``. - -.. interactvar:: iraw - iq - sq - fq - gr - - These variables are assigned the input raw intensities and the - intermediate results, stored as matrix rows. The matrix rows - correspond to twotheta1, intensity1, twotheta2, intensity2, etc. - Because matrices are iterated row first, the raw intensities - from all input files can be plotted with the matplotlib plot - function as ``plot(*iraw)``. - - These variables should be considered read-only and are reset - with subsequent PDF calculations. - -.. py:function:: tuneconfig(plotids=None, pdfgetter=None, axeslist=None) - - Show a GUI dialog for interactive tuning of configuration variables. - - :arg plotids: - The string or iterable that specify what interactive plots should be - tuned. By default the same as ``config.plot``. It can be also an - integer index or name of a transformation in :py:func:`pdfgetter` or - a reference to a :py:class:`!Transformation` object. - - :arg pdfgetter: - The optional :py:class:`!PDFGetter` object to be tuned. - This is by default the interactive :py:func:`!pdfgetter` object. - - :arg axeslist: - An optional list of matplotlib Axes for showing interactive plots. - When None, use ``subplot(N, 1, i)`` to create any necessary axes. - - .. note:: - - Changes from :py:func:`!tuneconfig` apply only to the configuration - and results in memory. Use the :py:func:`processfiles` function - to save them to disk. - - .. seealso:: :ref:`my-tuneconfig` tutorial - -.. py:function:: processfiles(filename=None, **kwargs) - - Process all input files again with the current configuration values. - This is a higher-level function than :py:func:`pdfgetter`, as - it also saves output files and produces plots as specified by the - :interactvar:`config` object. - - :arg filename: - One or more input files to be converted to PDFs and saved or - plotted according to the :py:data:`!config` settings. Use the - previous list of input files when not specified. - - :arg kwargs: - An optional keyword arguments to set for the :py:data:`!config` - object, for example ``(force="once", qmax=18)``. - - This function updates the :interactvar:`config.inputfiles ` - list and the :interactvar:`iraw`, :interactvar:`iq`, - :interactvar:`sq`, :interactvar:`fq` and :interactvar:`gr` - interactive variables. - -.. py:function:: clearsession() - - Clear all elements from the :interactvar:`config.inputfiles ` - and also the - :interactvar:`iraw`, :interactvar:`iq`, :interactvar:`sq`, - :interactvar:`fq` and :interactvar:`gr` variables. - - :return: - No return value. - -.. py:currentmodule:: diffpy.pdfgetx -.. autofunction:: loaddata - - This function can be imported from the - :py:mod:`!diffpy.pdfgetx` module. - -.. py:currentmodule:: diffpy.pdfgetx.plotdata -.. autofunction:: plotdata - - This function can be imported from the - :py:mod:`!diffpy.pdfgetx.plotdata` module. - -.. py:currentmodule:: diffpy.pdfgetx -.. autofunction:: findfiles - - This function can be imported from the - :py:mod:`!diffpy.pdfgetx` module. diff --git a/static_root/doc/pdfgetx/2.1.1/_sources/intro.rst.txt b/static_root/doc/pdfgetx/2.1.1/_sources/intro.rst.txt deleted file mode 100644 index a112ee9a..00000000 --- a/static_root/doc/pdfgetx/2.1.1/_sources/intro.rst.txt +++ /dev/null @@ -1,70 +0,0 @@ -Introduction -======================================================================== - -diffpy.pdfgetx is a simple yet powerful software for converting X-ray or -neutron powder diffraction data to atomic Pair Distribution Functions -(PDFs). In addition, it also allows the extraction of PDFs from small-angle -scattering (SAS) data. The software includes three command line programs -PDFgetX3, PDFgetN3 and PDFgetS3 for processing X-ray, -constant-wavelength neutron and small-angle diffraction data -respectively. PDFgetX3, PDFgetN3 and PDFgetS3 can be used in a batch -mode to convert a series of data files without user intervention. The -programs can be also run in an interactive mode that allows to control -process parameters and plot the PDFs and any intermediate results. Users -can interactively tune the PDF processing parameters, visualize their effect on the results and adjust them to their optimum values. The programs are bundled with Python library diffpy.pdfgetx for PDF processing functions, which can be used in custom Python scripts. - - -.. index:: license - -License notice ------------------------------------------------------------------------- - -.. include:: ../../LICENSENOTICE.txt - - -.. index:: authors - -Authors ------------------------------------------------------------------------- - -This code was written by members of the Billinge Group at -Columbia University and Brookhaven National Laboratory including -Pavol Juhás, -Timur Davis, -Chia-Hao (Timothy) Liu, -Christopher Wright, -Christopher Farrow, -Hung Vuong, -Songsheng Tao, -Simon Billinge. - - -.. index:: citations, references - -References ------------------------------------------------------------------------- - -If you use this program for a scientific research that leads -to publication, we ask that you acknowledge use of the program -by citing the following paper in your publication: - - P. Juhás and T. Davis, C. L. Farrow, S. J. L. Billinge - `PDFgetX3: A rapid and highly automatable program for processing - powder diffraction data into total scattering pair distribution - functions `__, - *J. Appl. Crystallogr.* **46**, 560-566 (2013) - -For research publications that use this software to process neutron -diffraction data we ask you to also cite: - - P. Juhás, J. N. Louwen, L. van Eijck, E. T. C. Vogt, - S. J. L. Billinge - `PDFgetN3: atomic pair distribution functions from neutron - powder diffraction data using ad hoc corrections - `__, - *J. Appl. Crystallogr.* **51** (2018) - -For research publications utilising the sasPDF utility, PDFGetS3, we ask you to acknowledge the use of the program by citing following paper in your publication: - - CH Liu, E. Janke, R. Li, P. Juhás, O. Gang, D. V. Talapin, S. J. L. Billinge - `sasPDF: pair distribution function analysis of nanoparticle assemblies from small-angle-scattering data `__. diff --git a/static_root/doc/pdfgetx/2.1.1/_sources/options.rst.txt b/static_root/doc/pdfgetx/2.1.1/_sources/options.rst.txt deleted file mode 100644 index c02220f2..00000000 --- a/static_root/doc/pdfgetx/2.1.1/_sources/options.rst.txt +++ /dev/null @@ -1,370 +0,0 @@ -Options and parameters -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 - -PDFgetX3, PDFgetN3 and PDFgetS3 are very flexible in allowing users to customize -the actions of the program. They have a number of parameters that can -be specified either in configuration file or as command line options. -Here is a complete description of the parameters and options used by -either program. - - -.. Note :: - - The command line options start with a leading "-" and can - be only used as command line arguments when starting the - :program:`pdfgetx3` program. Within configuration file the parameter - names are plain words without any leading dashes. Finally, - parameters can be also set in the interactive mode as attributes of - the :interactvar:`config` object, but the assignments must be valid - Python statements. Here are examples of setting composition of - a processed specimen using each of these forms: - - #. assigned in configuration file:: - - ... - composition = CaTiO3 - ... - - #. set as a command-line option when starting :program:`pdfgetx3` or - :program:`pdfgetn3`:: - - pdfgetx3 --composition=CaTiO3 - - #. set in the IPython interactive mode:: - - pdfgetx3 -i - ... - In [1]: config.composition = "CaTiO3" - - -Program operation ------------------------------------------------------------------------- - -.. option:: -h, --help - - Display a brief usage information with a list of command line options - and exit. - -.. option:: -V, --version - - Display the program version and exit. - -.. option:: --manual - - Open this manual in a Web browser and exit. - -.. option:: -f, --find -.. _my-findpatterns: - - Select input files that match all patterns. The command - line arguments are by default taken as input files. However, - with the :option:`!--find` option they are processed as - file patterns and the matching files are then used as inputs. - The input files are by default searched in the current directory - unless there is a path entry (e.g., :file:`data/`) that - selects a different search path. The search patterns are - interpreted as fixed strings, all of which must be present - in the file name. A single argument ``+`` starts - a new group of patterns to match more files that are not - covered by one set of patterns. Additional pattern - groups reuse the current search path unless they provide - their own path value. Pattern groups containing only - a path entry reuse file patterns from the last group. - When pattern groups overlap the repeated matches are ignored - to make the resulting list of files unique. Files starting - with ``.`` are ignored unless there is ``^.`` pattern - that explicitly matches them. The search - syntax provides the following special patterns: - - .. tabularcolumns:: |l|p{0.75\textwidth}| - - +---------+------------------------------------------------------------+ - | ^ | match at the beginning of the string, i.e., ``^start`` | - | | matches only filenames that start with "start". | - +---------+------------------------------------------------------------+ - | $ | match at the end of string, for example, ``.chi$`` selects | - | | file names ending with ".chi". A ``$`` on its own | - | | matches every string and can be used to select all files. | - +---------+------------------------------------------------------------+ - | | match number *N* preceded by any number of leading zeros, | - | | e.g., ``<7>`` would match in "f7.chi", "f007.chi", but not | - | | in "f77.chi". | - +---------+------------------------------------------------------------+ - | | match an integer range from *N* to *M* inclusive. | - | | The matched number may have one or more leading zeros. | - +---------+------------------------------------------------------------+ - | <7-> | match number 7 or larger. | - +---------+------------------------------------------------------------+ - | <-7> | match number 7 or smaller. | - +---------+------------------------------------------------------------+ - | <-> | match any integer number. | - +---------+------------------------------------------------------------+ - | \+ | start a new pattern group, for example, ``.chi$ + .dat$`` | - +---------+------------------------------------------------------------+ - | / | set search path. An argument containing the ``/`` symbol | - | | is taken as the search path, for example, ``data/`` or | - | | ``./``. Each pattern group may provide its own search | - | | path effective for that and any subsequent pattern group. | - +---------+------------------------------------------------------------+ - - The ``^$<>`` characters are often special to Unix or Windows - command shells, therefore they need to be enclosed in double - quotes (\\") when used on command line. - - .. seealso:: tutorial on :ref:`my-findexamples` - -.. option:: -l, --list - - List all input files and exit. This is useful with the - :option:`!--find` option to verify if input files - are matched as intended. - - -Configuration file options ------------------------------------------------------------------------- - -.. option:: -c CONFIG, --config=CONFIG - - Read custom configuration file after loading the default ones. - Do not load any configuration file when "NONE". - -.. option:: -s NAME, --section=NAME - - Load the custom configuration file section ``[SectionName]`` after - loading the ``[DEFAULT]`` section. This is useful for creating - several configuration variants in a single configuration file. - -.. option:: --createconfig=FILE - - Write template configuration to a new FILE and exit. Write - to the standard output when FILE is "-". - -See also the :ref:`configuration file ` section -for further details. - -.. _my-ioparameters: - -Input and output options ------------------------------------------------------------------------- - -.. confval:: inputfile - - This parameter allows to specify one or more input files in the - configuration file, one file per line. The :confval:`!inputfile` - is only used if no input files were provided on the - :program:`pdfgetx3` or :program:`pdfgetn3` command line. - -.. confval:: dataformat -.. option:: --format=FORMAT - - Format of input files. Available formats are: ``twotheta``, ``QA``, - ``Qnm`` corresponding to a two-column text data where the first - column is either the scattering angle |twotheta| in degrees, *Q* in - inverse ångströms or *Q* in inverse nanometers. - -.. confval:: backgroundfile -.. option:: -b FILE, --background=FILE - - Optional datafile with background intensities from an empty sample - holder. It must be in the same dataformat as other input files. - -.. Note :: - - The following input is only used in ``sas`` mode. - -.. confval:: formfactorfile -.. option:: -ff FILE, --formfactorfile=FILE - - Form factor intensities of the scatterers. This is required for ``sas`` mode. The form factor file is expected to be in two-column format with (Q, f2avg) data or three-column format with (Q, f2avg, favg2) data. The unit of Q is required to be A^-1. - -.. _my-datapath: -.. confval:: datapath -.. option:: -d DATAPATH, --datapath=DATAPATH - - One or more extra directories to be searched for input or - background data files. The :option:`!-d` option can be specified - several times to add more directories, these are prepended in front - of any default value. Within configuration file the datapath - directories have to be listed each on a separate line. - - A special value "NONE" (or "none") clears any previously defined - paths and only the further paths, if any, would be searched for - inputs. - -.. confval:: output -.. option:: -o OUTPUT, --output=OUTPUT - - Output file name, write to the standard output when "-". The - :option:`-t, --outputtypes <-t>` option controls what results are - being saved. Normally the OUTPUT is used as a custom basename for - the output files. The OUTPUT may contain @f, @h, @r, @e, @t, @b, @o - tokens, which are expanded as follows: - - ===== ================== ======================================= - token example definition - ===== ================== ======================================= - @h dir1/dir2 the input file directory or "." - @r dir1/dir2/filename the input path with extension removed - @e dat the input file extension without "." - @t filename.dat the tail component of the input file - @b filename the tail component with extension removed - @o gr the output extension iq, sq, fq or gr - ===== ================== ======================================= - - An empty value works the same as "@b.@o" and saves the data - in the current directory with a proper extension for the - saved results. When "@o" is not present in the OUTPUT, it is - appended as a default filename extension. - -.. confval:: outputtypes -.. option:: -t TYPES, --outputtypes=TYPES - - Result types to be saved, one or more comma separated values. - Supported values are "iq", "sq", "fq", "gr", corresponding to the - |IQ|, |SQ|, |FQ| and |Gr| curves; these are also used as output - file extensions. - - Result files are not written when empty, "none" or "NONE". - -.. confval:: force -.. option:: --force=FORCE - - Overwrite existing output files. By default the output - files are not written if they already exist. Possible values - in a configuration file are "true", "yes", "on", "1" or - "false", "no", "off", "0" or "once". The special value "once" - permits one overwrite and then resets ``config.force`` to - ``False``. Note that in interactive mode the values assigned - to ``config.force`` are converted to Python :py:class:`bool` - unless equal to "once". - - -.. _my-pdfparameters: - -PDF parameters ------------------------------------------------------------------------- - - -.. confval:: mode -.. option:: --mode=STRING - - The PDF conversion mode, i.e., the name of the - :py:func:`.pdfgetter` setup. The available modes correspond - to the radiation type used in powder diffraction experiment and can - be "xray" or "neutron". - -.. confval:: wavelength -.. option:: -w FLOAT, --wavelength=FLOAT - - X-ray wavelength in ångströms. This value is required - for the "twotheta" dataformat in order to convert the scattering - angles |twotheta| to a momentum transfer *Q*. For other data formats - the wavelength is not necessary and may be left undefined. - -.. confval:: twothetazero -.. option:: --twothetazero=FLOAT - - Position of the zero scattering angle in diffractometer degrees. - This parameter corrects for a constant offset in the - measured |twotheta| values. When loading configuration file - it is assumed 0 unless specified otherwise. This parameter - is only effective for the "twotheta" dataformat. - -.. confval:: composition -.. option:: --composition=STRING - - Chemical composition of the sample. Supported formats are - "PbTi0.5Zr0.5O3", "Pb 1 Ti 1/2 Zr 1/2 O 3" or "CH3 (CH2)3 OH". - Space characters are ignored, unit counts can be omitted, but it is - important to use a proper upper and lower case in atom symbols. - Elements can appear several times in the formula, e.g., "CH3 CH3", - and the formula may contain parentheses or fractional - stoichiometries. - -.. confval:: bgscale -.. option:: --bgscale=FLOAT - - Scaling of the background intensities loaded from the - :confval:`backgroundfile`, by default 1. - -.. confval:: rpoly -.. option:: --rpoly=FLOAT - - *r*-limit for the maximum frequency in the |FQ| correction polynomial. - The PDF is unreliable at shorter *r*, however a - very small :confval:`!rpoly` would disable polynomial correction and - give noisy PDF. - Larger values produce closer fits with a higher degree polynomial, - but when too large, they might smooth-out a useful signal in the - data. The default is 0.9. - -.. confval:: qmaxinst -.. option:: --qmaxinst - - The *Q* cutoff for the meaningful input intensities in inverse - ångströms. Some data files may contain trailing zeros - or unreliable intensities at the upper bound of the detector range. - The :confval:`!qmaxinst` defines a threshold for unreliable data. - The parameter is also used as an upper boundary for the polynomial - fit correction of the |SQ| data. - -.. confval:: qmin -.. option:: --qmin - - The lower *Q*-limit for the Fourier transformation of the |FQ| curve - in inverse ångströms. - -.. confval:: qmax -.. option:: --qmax - - The upper *Q*-limit for the Fourier transformation of the |FQ| curve - in inverse ångströms. This is essentially a limit, where sample - signal decays to the level of data noise. - -.. confval:: rmin -.. option:: --rmin=FLOAT - - Lower bound of the *r*-grid for the calculated PDF in ångströms. - -.. confval:: rmax -.. option:: --rmax=FLOAT - - Upper bound of the *r*-grid for the calculated PDF in ångströms. - -.. confval:: rstep -.. option:: --rstep=FLOAT - - Spacing of the *r*-grid for the calculated PDF in ångströms. - - -Other parameters ------------------------------------------------------------------------- - -.. confval:: plot -.. option:: -p TYPES, --plot=TYPES - - Plot the specified results. A comma separated list with one or - more items from "iq", "sq", "fq", "gr". No plot is produced when - empty, "none" or "NONE". Setting this option turns on the - interactive mode. - -.. confval:: interact -.. option:: -i, --interact - - Start an IPython interactive session after processing all files. - Useful for tuning the configuration parameters or interactive - plotting. This is always on when plot option has been set. - See also :doc:`interact` for further details. - -.. confval:: verbose -.. option:: --verbose=VALUE - - Level of detail for the program to report about its actions. - Possible values are "error", "warning", "info", "debug", "all" or an - integer number from 0 to 5. Messages are completely suppressed when - 0, all messages are printed when verbose is 5 ("all") or higher. - This option is useful for diagnostics of any unexpected behavior - in the program. diff --git a/static_root/doc/pdfgetx/2.1.1/_sources/plotdata.rst.txt b/static_root/doc/pdfgetx/2.1.1/_sources/plotdata.rst.txt deleted file mode 100644 index d1c02156..00000000 --- a/static_root/doc/pdfgetx/2.1.1/_sources/plotdata.rst.txt +++ /dev/null @@ -1,161 +0,0 @@ -.. index:: plotdata (program) -.. _cmd-plotdata: - -The plotdata program -======================================================================== - -.. include:: abbreviations.txt -.. program:: plotdata - -The PDFgetX3 software includes a simple stand-alone utility -:program:`plotdata` for plotting text data files. In most cases -this program can be invoked from a command-shell as :: - - plotdata file1.dat file2.dat - -which plots the numerical data from the text files :file:`file1.dat`, -:file:`file2.dat` together in a single graph. By default the first -column is used as an *x* variable and the second column is used for the -*y* values. After displaying the plot the program starts an `IPython`_ -interactive session allowing the user to modify or save plots. The -IPython session is initialized with the :data:`!filenames` variable -containing a list of plotted files. It also pre-loads the -|plotdata| and |findfiles| functions just as in PDFgetX3 -interactive session. The :py:func:`!plotdata` -function works in a similar way as the :program:`plotdata` program, -just its arguments need to be passed as Python function arguments -instead of command-line options. Thus an equivalent call of the -:py:func:`!plotdata` function would be:: - - In [1]: plotdata(['file1.dat', 'file2.dat']) - - -Selecting files ------------------------------------------------------------------------- - -The :program:`plotdata` program includes a file searching feature -that is useful for selecting a set of files in large -directories. It is also convenient for Windows operating systems, -where the command prompt cannot do filename expansion for patterns -such as ``*.dat``. The file search feature is controlled by the -following options: - -.. option:: -f, --find - - Use command line arguments as filename patterns and plot all matching - files. This option works in the same way as for - :program:`pdfgetx3`, for full details see the - :option:`pdfgetx3 --find ` documentation. Note that - within command line the special patterns ``^$<>`` need to be quoted - in double quotes (\\") so they are not processed by command shell. - -.. option:: -l, --list - - List the input files and exit. This is useful in conjunction - with the :option:`!-f, --find` option to check if data files - are selected as intended. - -Assuming the current directory contains 20 files named -:file:`file1.dat`, :file:`file2.dat`, ..., :file:`file20.dat`, -the plotting of files 9 to 13 could be done (with a check listing) -as follows :: - - $ plotdata -fl "<9-13>.dat" - file9.dat - file10.dat - file11.dat - file12.dat - file13.dat - $ plotdata -f "<9-13>.dat" - -Within an interactive IPython session the equivalent plot could be -produced by combining the |plotdata| and |findfiles| functions as :: - - In [1]: plotdata(findfiles("<9-13>.dat")) - - -Selecting x and y data ------------------------------------------------------------------------- - -The :program:`plotdata` program provides several ways of selecting -columns for *x* or *y* data and for specifying plot markers or line -formats. The columns can be specified using their integer index, -but one needs to keep in mind the index of the first column is "0" -as per Python indexing conventions. Here is a list of options -supported by the plotdata program (and function): - - -.. option:: -x X - - index or name of the *x*-column to plot. See the :option:`-y` option - for the supported syntax, but note that ``X`` may select only one - column. When set to "." use the data-row index for *x*. - -.. option:: -y Y - - index or name of the *y*-column or columns to plot. The ``Y`` column - specification can be a comma separated list of indices, column names - or Python-like ranges, for example "1,2", "G", "1:4" (START:STOP, - same as "1,2,3"), "1:4:2" (START:STOP:STEP, same as "1,3"), or - "-2:" (same as "-2,-1", i.e, the last 2 columns). Because column - indexing starts at "0" the second column must be specified as "1". - - The column names work if the data section in the file is preceded by - a headline of unique column names, for example:: - - x square cube - 1 1 1 - 2 4 8 - 3 9 27 - 4 16 64 - - For such data file the plotdata program will recognize column names - "x", "square" and "cube" and an implicit "." for row index. - -.. option:: -s STYLE, --style=STYLE - - optional plot format specification. See the - :func:`matplotlib.pyplot.plot` function - for a list of available formats. - -.. option:: -L LOG, --log=LOG - - axes to be plotted with logarithmic scaling, for example, "x", "y" or - "xy". Axes not listed in ``LOG`` will use linear scaling. - -.. option:: -h, --help - - display a brief usage info and exit. - -.. option:: -V, --version - - show program version and exit. - -.. option:: --manual - - Open this manual page in a Web browser and exit. - - -Examples ------------------------------------------------------------------------- - -The examples directory :file:`plotdata` contains a :file:`sincos.dat` -file that has 3-columns of values labeled as "x", "sin" and "cos". -Here are several examples of the :program:`plotdata` capabilities -when used from command line - the user is encouraged to try them out:: - - plotdata sincos.dat - plotdata -y 1,2 sincos.dat - plotdata -x . -y 0:3 sincos.dat - plotdata -y cos sincos.dat - plotdata -x sin -y cos -sr-- sincos.dat - -An equivalent usage from a general IPython session would be:: - - ipython --matplotlib=auto - In [1]: from diffpy.pdfgetx.plotdata import plotdata - In [2]: plotdata('sincos.dat') - In [3]: plotdata('sincos.dat', y=[1,2]) - In [4]: plotdata('sincos.dat', x='.', y=':3') - In [5]: plotdata('sincos.dat', y='cos') - In [6]: plotdata('sincos.dat', x='sin', y='cos', style='r--') diff --git a/static_root/doc/pdfgetx/2.1.1/_sources/quick-start.rst.txt b/static_root/doc/pdfgetx/2.1.1/_sources/quick-start.rst.txt deleted file mode 100644 index 0b2fffd1..00000000 --- a/static_root/doc/pdfgetx/2.1.1/_sources/quick-start.rst.txt +++ /dev/null @@ -1,163 +0,0 @@ -Quick-start guide -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 - -This guide assumes that the software has been correctly installed and -its command line programs PDFgetX3, PDFgetN3 and PDFgetS3 can be -executed by typing :program:`pdfgetx3`, :program:`pdfgetn3`, or -:program:`pdfgets3` in a shell window. Please, refer to the :doc:`installation ` section if this is not working yet. - -.. index:: pdfgetx3 (program) -.. _cmd-pdfgetx3: - -pdfgetx3 command ------------------------------------------------------------------------- - -The pdfgetx3 program is a command-line application, therefore all -the input files and run-parameters are supplied either as command-line -arguments or through a configuration file. In general, the pdfgetx3 is -executed from a command shell as :: - - pdfgetx3 [options] input1 input2 ... inputN - -The :file:`inputN` stands for an input powder diffraction data. The -:file:`inputN` file is a simple two-column text file, where the first -column corresponds to either the |twotheta| diffraction angle, or a -momentum transfer, *Q*, in inverse nanometer or inverse ångström units. -The second column contains the corresponding X-ray intensities. The -input file may start with a header containing comments or metadata -related to the measurement. PDFgetX3 will ignore any text leading to a -long two-column section. The example input files in this manual were -created with the -`FIT2D program `_ using -its "chi" output format, thus we will also refer to them as "chi-files". -A typical content of a "chi" file looks as folows: - -.. code-block:: none - - Pt_bulk-00055.tif: 2-theta Scan - 2-Theta Angle (Degrees) - - 1465 - 2.0003892E-02 0.0000000E+00 - 6.0011677E-02 0.0000000E+00 - 1.0001946E-01 0.0000000E+00 - 1.4002724E-01 0.0000000E+00 - 1.8003502E-01 0.0000000E+00 - ... - -The command-line options are arguments that start with a dash "-" and -are used to specify run-parameters or modify the program behavior. The -options can be specified in a short form that consists of a dash and -a single character, or in a long, more descriptive format starting with -a doubled dash ``--``. Options may require values. For short options, -the value may be joined to the option string, for example -:option:`!-w0.142774`, while for the long options it has to be separated -with an equal sign, e.g., :option:`!--wavelength=0.142774`. Although -all the PDF calculation parameters can be passed as command line -options, it is often more convenient to set them in a configuration -file. When run parameter is present both in a configuration file and -as command-line option, the command-line value takes precedence. The -command-line options are all described in the :doc:`options` section of -this manual. A brief summary of options can be also displayed by -executing :: - - pdfgetx3 --help - -The best way of getting familiar with PDFgetX3 is to process -the example diffraction data described in the :doc:`tutorial`. -In general, the first step is to create a commented configuration file ``pdfgetx3.cfg`` using:: - - pdfgetx3 --createconfig=pdfgetx3.cfg - -The configuration file can have any name, but it is preferable -to use either :file:`pdfgetx3.cfg` or :file:`.pdfgetx3.cfg`, -for these files are automatically loaded by PDFgetX3. All -other configuration files must be passed explicitly to the program -using the :option:`-c, --config <-c>` option. - -Open the pdfgetx3.cfg file in a **text** editor. The lines that -start with a hash mark ``#`` are comments and are not used. The lines -starting with a right brace ``[`` denote sections in the configuration -file. The active lines are all formatted as -"NAME=VALUE". Although PDFgetX3 has many options, in general only a few -of them are critical for the PDF calculation: - -* :confval:`dataformat` -- specifies the input data format - -* :confval:`wavelength` -- radiation wavelength in Å required for the - "twotheta" format. - -* :confval:`composition` -- chemical composition of the sample - -* :confval:`qmaxinst` -- upper *Q* boundary for a meaningful measurement - intensities. - -* :confval:`qmax` -- *Q*-cutoff for the Fourier transformation that - yields the PDF. - -Save the updated configuration file and run pdfgetx3 on the input data -:file:`FILENAME.chi` as :: - - pdfgetx3 --verbose=info -t gr FILENAME.chi - -Here the :option:`--verbose=info <--verbose>` option makes pdfgetx3 -print -more information about its operation. This helps to verify -if the configuration file is indeed loaded and if the parameter -values are assigned as intended. The PDFgetX3 will not write -any output files unless told so. The :option:`-t gr <-t>` option -tells the program to save the final |Gr| curve as a -:file:`FILENAME.gr` file in the working directory. - -The saved .gr file contains a header with all the calculation -parameters and the input file name. The .gr file can be therefore -also used as a configuration file in order to redo the same -calculation :: - - pdfgetx3 -c FILENAME.gr --plot=fq,gr - -Note this command does not include any .chi file and this will as -a result process the previously used input :file:`FILENAME.chi`. -The :option:`--plot=fq,gr <-p>` option tells PDFgetX3 to -display 2 plots for the reduced structure function |FQ| and the -final PDF |Gr|. The :option:`!--plot` option also implies an -:doc:`interactive mode ` -therefore the program does not exit, but starts an -interactive `IPython`_ session. To exit the interactive mode, -type ``exit()`` and press Enter. - -.. index:: pdfgetn3 (program) -.. _cmd-pdfgetn3: - -pdfgetn3 command ------------------------------------------------------------------------- - -The pdfgetx3 and pdfgetn3 programs operate in a very similar fashion -apart from being set to assume X-ray and neutron data respectively. -The type of the scattering data can be also specified using the -:option:`--mode` option. Running ``pdfgetn3`` is nearly identical -to executing ``pdfgetx3 --mode=neutron``. The only difference between -these commands is that pdfgetx3 checks for configuration files -:file:`pdfgetx3.cfg` and :file:`.pdfgetx3.cfg`, whereas -pdfgetn3 looks for :file:`pdfgetn3.cfg` and :file:`.pdfgetn3.cfg`. - -.. index:: pdfgets3 (program) -.. _cmd-pdfgets3: - -pdfgets3 command ------------------------------------------------------------------------- - -The pdfgets3 program is virtually the same as its counterparts for x-ray -(pdfgetx3) and neutron (pdfgetn3) diffraction data. The only difference -is that instead of referencing the well documented x-ray or neutron -scattering form factor data, a user-defined form factor data is used -for getting the PDF from a small-angle scattering (SAS) data. This -behavior is enabled by specifying ``mode = sas`` in the configuration -file or in the command line tool. The pdfgets3 program by default -searches for a configuration named :file:`pdfgets3.cfg` and -:file:`.pdfgets3.cfg` in order, when no configuration file is specified. - -Please refer to the :doc:`tutorial section ` for a step-by-step processing of the example data files and for demonstration of the capabilities in PDFgetX3, PDFgetN3 and PDFgetS3. diff --git a/static_root/doc/pdfgetx/2.1.1/_sources/release.rst.txt b/static_root/doc/pdfgetx/2.1.1/_sources/release.rst.txt deleted file mode 100644 index 7ede93fa..00000000 --- a/static_root/doc/pdfgetx/2.1.1/_sources/release.rst.txt +++ /dev/null @@ -1,3 +0,0 @@ -.. index:: release notes - -.. mdinclude:: ../../CHANGELOG.md diff --git a/static_root/doc/pdfgetx/2.1.1/_sources/tutorial.rst.txt b/static_root/doc/pdfgetx/2.1.1/_sources/tutorial.rst.txt deleted file mode 100644 index ee02754b..00000000 --- a/static_root/doc/pdfgetx/2.1.1/_sources/tutorial.rst.txt +++ /dev/null @@ -1,744 +0,0 @@ -Tutorial -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 -.. index:: example files -.. py:currentmodule:: diffpy.pdfgetx - -In this tutorial we will convert several X-ray powder diffraction -patterns to corresponding PDFs. Open a terminal on a Unix-based system -or a Command Prompt on Windows and navigate to the :file:`examples` -folder included with the PDFgetX3 distribution. The :file:`examples` -folder can be found in the parent "doc" directory relative to this -document or another option is to just search your file system for -one of the input files mentioned below. -The example files are also available at -|zipped-examples|. - - -.. index:: examples - -Nickel X-ray PDF ------------------------------------------------------------------------- - -predefined configuration file -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - - -Change to the :file:`Ni` directory. The file named -:file:`ni300mesh_300k_nor_1-5.chi` contains powder X-ray data -measured from nickel at the Advanced Photon Source beamline -6ID-D. The file contains two columns for the |twotheta| scattering -angles and X-ray intensities. The second file -:file:`kapton_bgrd_300k_nor_2-3.chi` contains the background -measurement, i.e., the intensities from an empty capillary. -Finally, the :file:`pdfgetx3.cfg` contains a complete configuration -parameters for converting the powder pattern to a PDF. Since all -processing parameters are already defined in the configuration file, -the first PDF calculation is very simple and involves running the -:ref:`pdfgetx3 ` program -with the powder data file as an argument:: - - $ pdfgetx3 ni300mesh_300k_nor_1-5.chi - -For the first run there should be no output on the screen, -however a new file, :file:`ni300mesh_300k_nor_1-5.gr` should appear -in the work directory. -We can use the :ref:`plotdata ` program, -included with this software, to plot the output data:: - - $ plotdata ni300mesh_300k_nor_1-5.gr - -This will open a graph window and start an `IPython`_ interactive session. -To exit and close the figure, type ``exit()`` on the IPython prompt. -Let's run the program again, but now with a -:option:`--verbose=info <--verbose>` -option, to show more details about the program actions. :: - - $ pdfgetx3 --verbose=info ni300mesh_300k_nor_1-5.chi - - INFO:applying pdfgetx3 defaults - INFO:set config.mode = xray - INFO:searching for default config file /home/user/.pdfgetx3.cfg - INFO:searching for default config file .pdfgetx3.cfg - INFO:searching for default config file pdfgetx3.cfg - INFO:loaded default config file pdfgetx3.cfg - INFO:reset config.twothetazero = 0.0 - INFO:parsing config file section [DEFAULT] - INFO:set config.dataformat = twotheta - INFO:set config.backgroundfile = kapton_bgrd_300k_nor_2-3.chi - INFO:set config.outputtypes = gr - INFO:set config.wavelength = 0.142774 - INFO:set config.composition = Ni - INFO:set config.qmaxinst = 26.5 - INFO:set config.qmax = 26.0 - INFO:set config.rmin = 0.0 - INFO:set config.rmax = 30.0 - INFO:set config.rstep = 0.01 - INFO:finished parsing config file - INFO:processing command line options - INFO:set config.verbose = info - INFO:finished with command line options - INFO:using 1 input files from the command line. - INFO:configuring PDFGetter mode 'xray' - INFO:calling config_xray - INFO:started PDF processing. - INFO:processing 'ni300mesh_300k_nor_1-5.chi' - INFO:resolved output file '' as 'ni300mesh_300k_nor_1-5.gr' - WARNING:ni300mesh_300k_nor_1-5.gr already exists. - WARNING:Use "--force=yes" or "--force=once" to overwrite. - INFO:elapsed time: 0.095 - -Here we can see what configuration files are searched, which of them -get loaded and what are the effective values of the processing -parameters. Unless the :option:`!--verbose` option is in effect, the -program will show only messages that have either WARNING or ERROR -importance. The warning line above indicates no output has been -written, because that file already exists. This safety check can be -overruled with the :option:`--force=yes <--force>` option, upon -which pdfgetx3 would overwrite any existing files. - -PDFgetX3 output files start with a header that lists all the processing -parameters and can be used as a valid configuration file with the -:option:`-c` option. Another option, :option:`--plot=[iq,sq,fq,gr] -<-p>` turns on plotting of the final PDF or of some other result. A -side effect of the :option:`!--plot` option is that pdfgetx3 starts in -an interactive mode, so the user can manipulate or save the plots. To -put it all together, we are now going to redo the original PDF and plot -its reduced total scattering function |FQ| and the PDF curve |Gr|. This -time the chi file is not necessary, because the input file is already -listed in the gr file that is now used as a custom configuration:: - - $ pdfgetx3 -c ni300mesh_300k_nor_1-5.gr --plot=fq,gr - - WARNING:ni300mesh_300k_nor_1-5.gr already exists. - WARNING:Use "--force=yes" or "--force=once" to overwrite. - - Variables related to PDF processing: - - pdfgetter -- PDFGetter used for calculation. - config -- configuration data used by PDFGetter. - See config.inputfiles for a list of inputs. - iraw -- matrix of input raw intensities with 2 rows per file. - iq sq fq gr -- intermediate results per each input file stored - as matrix rows. - - Functions: - - tuneconfig -- dynamically tune configuration variables. - processfiles -- process specified data files. - clearsession -- clear all elements from the inputfiles, iraw, - iq, sq, fq and gr variables. - plotdata -- plot all or selected columns from a text data file. - loaddata -- load all or selected columns from a text data file. - findfiles -- search for files matching the specified patterns. - - Use "%pdfgetx3" for a fresh run without exiting IPython. - In [1]: - -This will open a plot figure similar to - -.. image:: images/nickelfqgr.png - -Because of the :doc:`interactive mode ` implied by plotting, -the program enters an IPython session. -The IPython environment is preloaded with several extra functions -and variables related to the PDF processing. For example, the -:interactvar:`config` variable stores all the configuration parameters, -and its content can be displayed with the :py:func:`print` -function as :: - - In [1]: print(config) - - configfile = ni300mesh_300k_nor_1-5.gr - configsection = DEFAULT - dataformat = twotheta - ... - qmax = 26.0 - ... - -The :py:func:`.processfiles` function allows to redo the -whole calculation and plotting process for additional input files or -for new parameter values. To plot the |FQ| and |Gr| -curves calculated at |Qmax| = 22 |Ainv|, we can call -:py:func:`!processfiles` and pass it a keyword argument for -the new qmax as follows:: - - In [2]: processfiles(qmax=22) - - # the qmax parameter was updated to a new value, thus - In [3]: config.qmax - Out[3]: 22 - -There should be now two lines in each plot axis corresponding to -the results at |Qmax| equal 26 and 22 |Ainv|. To exit the program, -type ``exit()``. - - -processing from scratch -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -We have already encountered the command-line :option:`option -c <-c>` -for specifying a custom configuration file. A special argument "NONE", -will make pdfgetx3 ignore any configuration files and start up in a -default state. We can use this feature to process the nickel PDF as if -we did not have any configuration file:: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi - - WARNING:Nothing to do, use "-t" or "--plot" options. - ERROR:Configuration error: wavelength not specified. - ERROR:See "--help" for more hints. - -There is an error, for the wavelength is necessary to convert -the scattering angle |twotheta| to momentum transfer *Q*. The -X-ray wavelength was 0.142774 Å, which can be passed with the -:option:`-w, --wavelength <-w>` option:: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 - - ... - ERROR:Configuration error: Chemical composition not known. - ERROR:See "--help" for more hints. - -There is still an error. The PDF calculation needs an average -X-ray scattering factor of the material, which is obtained from -sample chemical composition. The composition can be specified -with the :option:`--composition` option. The example -below uses a "\\\\" character to indicate the command continues -on the next line. Such syntax works in Unix terminals, but -on Windows the command has to be typed all on a single line:: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \ - --composition=Ni - - WARNING:Nothing to do, use "-t" or "--plot" options. - ... - -There was no error message this time, but the program complains -about a lack of action. The pdfgetx3 program does not write any results -unless instructed by the :option:`-t, --outputtypes <-t>` option. -The outputtypes option recognizes the following result types: -"iq", "sq", "fq", "gr". One or more of these type strings, -separated by a comma, can be included with the -:option:`!-t` option, which will produce the corresponding -output files. An empty string, such as ``-t ""``, or ``-t NONE`` -may be used to clear any outputtypes defined in the configuration file, -and avoid the unseemly file-exists warnings. - -At this point, we will not write any output files, but will use the -:option:`--plot <-p>` option to display the calculated curves. The -:option:`!--plot` accepts the same arguments as outputtypes, so to -display the |FQ| and |Gr| curves we shall run :: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \ - --composition=Ni --plot=fq,gr - - WARNING:qmaxinst reset to last nonzero point qmaxinst=28.0865680161 - WARNING:qmax reset to the data boundary qmaxinst=28.0865680161 - -which should open the following plot window: - -.. image:: images/nickelfqgrnoisy.png - -The graphs look terrible. The PDF is very noisy and the |FQ| curve -shows a sudden break at about 27 |Ainv|. What happened? The powder -intensities are inaccurate at a very top of the detector angular range. -The interactive session is setup with -:interactvar:`iraw`, :interactvar:`iq`, :interactvar:`sq`, -:interactvar:`fq`, :interactvar:`gr` -variables for the original raw data and intermediate results. We -are going to plot the "iq" variable that has the input intensities -resampled on the *Q* grid. The matplotlib function -:py:func:`~matplotlib.pyplot.clf` clears the figure, -the iq variable is a two-row matrix with *Q* and *I* rows, and the -:py:func:`~matplotlib.pyplot.axis` -function lets us zoom to a given range:: - - In [1]: clf() - In [2]: plot(iq[0], iq[1]) - Out[2]: [] - In [3]: axis([20, 29, 0, 3000]) - Out[3]: [20, 29, 0, 3000] - -The graph shows a sudden drop in the raw intensities at 27 |Ainv|. -The :confval:`qmaxinst` variable defines a *Q* cutoff for a meaningful -instrument intensities and, to be on a safe side, we are going to set -it to 26.5 |Ainv| :: - - In [4]: processfiles(qmaxinst=26.5) - WARNING:qmax reset to the data boundary qmaxinst=26.5 - -The updated curves looks reasonable without any oscillations and -breakpoints. The :py:func:`.tuneconfig` function provides a -GUI-driven way for visualizing the processing parameters and their -effect on the results. Type ``tuneconfig()`` to execute the function, -which should open a new window with several sliders. Try to move -different sliders and see how do the |FQ| and |Gr| curves change. -The :confval:`rpoly` parameter controls the degree of data-correction -polynomial and is an approximate low-*r* bound of reliable *G* -values. Once the parameters are tuned, they may be set to -exact values. We will also turn on the writing of the |Gr| -curve and save it to an output file :file:`nicmd.gr`:: - - In [14]: config.qmax = 26 - In [15]: config.outputtypes = 'gr' - In [16]: config.output = 'nicmd' - In [17]: processfiles() - - -Platinum X-ray series ------------------------------------------------------------------------- - -PDFgetX3 has been designed to handle large series of data files. -With the fast area-detectors it is easy to measure hundreds of X-ray -patterns in a time or temperature series. Normally, these input -files need to be entered as command line arguments to the pdfgetx3 -program. This is usually no problem with Unix-like shells, which -expand filename patterns to a list of matching files. -However, such file generation is in general not available on Windows. -The input file names tend to include scan numbers which are useful -for selecting desired data, yet even with Unix shells it is -difficult to match a range of scan numbers -(`z-shell `_ being a notable exception). - -.. _my-findexamples: - -matching input files -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -The :program:`pdfgetx3` program includes a built-in function for finding -a set of input files. The command line arguments are normally taken as -input file names. However, if the :option:`-f, --find <-f>` option is -present, the arguments are understood as patterns and the program looks -for files that match ALL of them. Another option -:option:`-l, --list <-l>` makes pdfgetx3 print out the matching files -without any other action, which can be used to verify if the patterns -match intended files. - -We will try out this file search on platinum example files. Open a -terminal and navigate to the :file:`Pt` directory. There should be a -:file:`series` subdirectory with 6 chi files indexed from 903 to 908. -At first, let's stay in the :file:`Pt` directory and run the following -command :: - - $ pdfgetx3 --list --find - - Pt_bulk-00055-pdfgetx2.gr - Pt_bulk-00055-pdfgetx3.gr - Pt_bulk-00055.chi - empty_capillary-00032.chi - pdfgetx3.cfg - plotpdfcomparison.py - -Without any patterns the file search matches all files in the current -directory. Now let's try to add name patterns. There are few special -patterns, for example ``^`` matches at the beginning of the filename, ``$`` at the end and ```` matches a range of integer values from -*N* to *M*. The patterns containing ``^$<>`` need to be quoted as -these characters have special meaning in the shell. Here are some -examples how it works. - -Filenames containing "y":: - - $ pdfgetx3 --list --find y - empty_capillary-00032.chi - plotpdfcomparison.py - -Filenames that containing both "y" and "chi", here we use the -options :option:`!--list` and :option:`!--find` in an abbreviated -form :option:`!-l` and :option:`!-f`:: - - $ pdfgetx3 -lf y chi - empty_capillary-00032.chi - -Filenames that start with "e":: - - $ pdfgetx3 --list --find "^e" - empty_capillary-00032.chi - -Filenames that contain *character* "2":: - - $ pdfgetx3 --list --find 2 - Pt_bulk-00055-pdfgetx2.gr - empty_capillary-00032.chi - -Filenames that contain *numeric value* "2":: - - $ pdfgetx3 -lf "<2>" - Pt_bulk-00055-pdfgetx2.gr - -The special argument ``+`` starts a new group of patterns to -generate extra files when they cannot be all covered by -a single set of patterns. For example, to match files that -contain contain both "bulk" and "chi" substrings and then -also those that have "empty" and "chi" in their names, use:: - - $ pdfgetx3 -lf bulk chi + empty chi - Pt_bulk-00055.chi - empty_capillary-00032.chi - -When pattern groups overlap the resulting matches are -made unique and each file is listed only once :: - - $ pdfgetx3 -lf bulk chi + chi - Pt_bulk-00055.chi - empty_capillary-00032.chi - - -data search path -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -Each group of PDFgetX3 patterns can have one entry containing -forward slash "/" to specify a non-current path that is searched -for input files. The path specification affects the current and -the following pattern groups unless they provide their own path. -The chi files numbered "903" to "905" and "908" from the -:file:`series` subdirectory can be therefore matched using :: - - $ pdfgetx3 -lf series/ "<903-905>" + 908 - series/Pt_bulk_ramp03-00903.chi - series/Pt_bulk_ramp03-00904.chi - series/Pt_bulk_ramp03-00905.chi - series/Pt_bulk_ramp03-00908.chi - -The current directory can be selected using `./` :: - - $ pdfgetx3 -lf series/ 903 + ./ bulk chi - series/Pt_bulk_ramp03-00903.chi - Pt_bulk-00055.chi - -When additional pattern groups contain only the path -argument, they reuse the existing set of patterns. The -".chi"-ending files in the current and :file:`series` -directories can be thus found using :: - - $ pdfgetx3 -lf ".chi$" + series/ - Pt_bulk-00055.chi - empty_capillary-00032.chi - series/Pt_bulk_ramp03-00903.chi - series/Pt_bulk_ramp03-00904.chi - series/Pt_bulk_ramp03-00905.chi - series/Pt_bulk_ramp03-00906.chi - series/Pt_bulk_ramp03-00907.chi - series/Pt_bulk_ramp03-00908.chi - - -output file names -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -By default the output files are saved in the current directory. The -output path, can be changed with the :option:`-o, --output <-o>` option. -The :option:`!-o` recognizes several tokens that are replaced with -parts of the input file name, for example, "@b" expands to an -extension-stripped base name. In similar faction, "@o" is replaced -with the output type extension. Thus to generate PDFs for all files -in the :file:`series` directory and save them in the -:file:`series-gr` subfolder do :: - - $ pdfgetx3 --find series/ "<900-910>.chi" --output=series-gr/@b.@o - -The extension ".@o" is automatic when not included anywhere in the -output file name. Thus to process the Pt series at |Qmax| = 18 |Ainv| -while saving the results in the same folder, but with a "_qmax18" suffix -in their filenames do :: - - $ pdfgetx3 --find series/ "<900-910>.chi" --qmax=18 -o series-gr/@b_qmax18 - -For input file :file:`Pt_bulk_ramp03-00903.chi` the :option:`!-o` option -above expands to output path :file:`series-gr/Pt_bulk_ramp03-00903_qmax18.gr`. -The :file:`series-gr` directory should now contain 12 "gr" files, -6 of them processed at |Qmax| = 27 |Ainv| as given by configuration -file and 6 others processed at |Qmax| = 18 |Ainv|. - -.. seealso:: :option:`-o, --output <-o>` for a list of output tokens - -.. index:: tuneconfig (example) -.. _my-tuneconfig: - -Interactive tuning of parameters ------------------------------------------------------------------------- - -One of the most powerful features of PDFgetX3 is the ability to tune -PDF processing parameters in an interactive mode and immediately -visualize their effect on the results. To demonstrate this feature, -navigate to the :file:`Ni` directory in the shell and process -the nickel PDF while plotting the |FQ| and |Gr| curves. -Because of plotting the program will open an interactive IPython -session. The tuning mode can be then entered by calling the -:py:func:`.tuneconfig` -function from the IPython environment :: - - $ pdfgetx3 --plot=fq,gr ni300mesh_300k_nor_1-5.chi - ... - In [1]: tuneconfig() - -The -:py:func:`!tuneconfig` -function will by default add a second set of live lines -for the plotted curves and open a GUI dialog with sliders for the -tunable process parameters. Changing any slider would immediately -recalculate the PDF and update live lines in the plot. - -.. image:: images/tunenickelfqgr.png - -The *constant data scale* check-box rescales the result curves to a -constant maximum value. This is useful for assessing if a parameter -change produces different curve shape or if it just rescales the -results. The tunable parameters are described in the -:ref:`PDF parameters section `. -Only the active parameters are displayed in the tuneconfig GUI, -thus there would be no slider for the :confval:`bgscale` parameter -if PDF has been processed without any background data. - -By default the -:py:func:`!tuneconfig` -function displays the same curves as -specified by the :option:`--plot <-p>` option, however it can be -configured to show arbitrary intermediate results or even visualize -selected steps in the PDF processing. We shall demonstrate this by -showing a live-plot of the polynomial correction together with the final -PDF. At first, we shall use the :py:meth:`!describe` method of the -:py:func:`.pdfgetter` object to print out the chain of -transformations involved in the PDF processing and obtain a reference to -the transformation object *t4* that applies the polynomial correction. -The transformation object can be then included in a list of plot -identifiers that are passed to the :py:func:`!tuneconfig` function :: - - $ pdfgetx3 -i ni300mesh_300k_nor_1-5.chi - ... - Use "%pdfgetx3" for a fresh run without exiting IPython. - - In [1]: fig, ax = subplots(2) - In [2]: pdfgetter.describe() - 0 TransformTwoThetaToQA - convert x data from twotheta to Q in 1/A - 1 TransformQGridRegular - Remove the data outside the (qmin, qmaxinst) range - 2 TransformBackground - subtract background intensity - 3 TransformXrayASFnormChris - scale and normalize intensities by x-ray scattering factors - 4 TransformSQnormRPoly - Normalize S(Q) by fitting a polynomial - 5 TransformSQToFQ - Convert S(Q) to F(Q). - 6 TransformFQgrid - Resample F(Q) to a regular grid suitable for FFT - 7 TransformFQToGr - Convert F(Q) to G(r). - In [3]: t4 = pdfgetter.getTransformation(4) - In [4]: tuneconfig([t4, 'gr'], axeslist=ax) - In [5]: ax[0].legend(loc=2) - -The :py:func:`~matplotlib.pyplot.subplots` function above -is to create a new figure with 2 axes on top of each other. -Overall, the code above should display the following plot -and a GUI window: - -.. image:: images/tunenickelt4gr.png - -The tuning can be finished by clicking the ``Done`` button or closing the -tuneconfig GUI window. The parameter values can be thereafter adjusted -to a rounded values by setting an attribute of the :interactvar:`config` -object, for example:: - - In [5]: config.bgscale = 1.5 - -Finally, to save the new results, we shall first confirm -:confval:`outputtypes` have been correctly set and then use the -:py:func:`.processfiles` function to redo the calculations, plots and -data output for the updated configuration. Note that the -:py:func:`!processfiles` function accepts keyword arguments for -configuration parameters. This is used at line ``In [8]`` to -turn on the :confval:`force` flag and is in effect a shortcut -for an extra ``config.force = True`` statement. :: - - In [6]: config.outputtypes - Out[6]: ['gr'] - In [7]: processfiles() - WARNING:ni300mesh_300k_nor_1-5.gr already exists. - WARNING:Use "--force=yes" or "--force=once" to overwrite. - In [8]: processfiles(force=True) - -:file:`ni300mesh_300k_nor_1-5.gr` was successfully saved at an -updated configuration for there were no warnings after the last call. - - -Neutron PDF ------------------------------------------------------------------------- - -This example illustrates PDF extraction from -neutron powder data using :ref:`pdfgetn3 `. -Navigate to the :file:`n-Sapphire` directory in the shell. -The :file:`sapphire755.dat` file contains powder diffraction data from -sapphire (α-Al\ :sub:`2`\ O\ :sub:`3`) -measured at the constant-wavelength PEARL instrument -at the Delft University of Technology. -The :file:`pdfgetn3.cfg` configuration file specifies -processing parameters such as :confval:`wavelength`, -:confval:`twothetazero`, :confval:`composition`, and :confval:`mode`. - -To extract the sapphire neutron PDF run :: - - $ pdfgetn3 --verbose=info sapphire755.dat - - INFO:applying pdfgetn3 defaults - INFO:set config.mode = neutron - INFO:searching for default config file /home/user/.pdfgetn3.cfg - INFO:searching for default config file .pdfgetn3.cfg - INFO:searching for default config file pdfgetn3.cfg - INFO:loaded default config file pdfgetn3.cfg - INFO:reset config.twothetazero = 0.0 - INFO:parsing config file section [DEFAULT] - INFO:set config.dataformat = twotheta - INFO:set config.backgroundfile = - INFO:set config.outputtypes = fq, gr - INFO:set config.mode = neutron - INFO:set config.wavelength = 1.0989 - INFO:set config.twothetazero = -0.38 - INFO:set config.composition = Al2O3 - INFO:set config.qmaxinst = 11.2 - INFO:set config.qmax = 11.2 - INFO:set config.rmin = 0.0 - INFO:set config.rmax = 20.0 - INFO:set config.rstep = 0.01 - INFO:finished parsing config file - INFO:processing command line options - INFO:set config.verbose = info - INFO:finished with command line options - INFO:using 1 input files from the command line. - INFO:configuring PDFGetter mode 'neutron' - INFO:calling config_neutron - INFO:started PDF processing. - INFO:processing 'sapphire755.dat' - INFO:resolved output file '' as 'sapphire755.fq' - INFO:written outpufile sapphire755.fq - INFO:resolved output file '' as 'sapphire755.gr' - INFO:written outpufile sapphire755.gr - INFO:elapsed time: 0.097 - -This will produce two files :file:`sapphire755.fq`, :file:`sapphire755.gr` -for the |FQ| and |Gr| functions. -To compare them with expected results use :: - - $ plotdata sapphire755-expected.fq sapphire755.fq - $ plotdata sapphire755-expected.gr sapphire755.gr - - -Fit twothetazero ------------------------------------------------------------------------- - -For a good quality PDF it is essential to use powder patterns with -accurate values of *Q*. Some instruments may produce spectra with -a slightly offset scattering angle |twotheta| which -causes inaccurate *Q* and a noticeably worse PDF. -In this example we fit a constant-wavelength neutron PDF from nickel -together with the :confval:`twothetazero` correction parameter for -diffractometer offset. -The procedure can be used to calibrate the zero correction from -a standard sample and then use it for subsequent PDF extractions. -The protocol can be also applied to fit zero correction in -a full-fledged PDF refinement in case -the zero offset may change for different samples. - -This tutorial requires either Linux or Mac OS X platforms, -because the PDF fitting is conducted with -`diffpy.cmi `__, -which is not yet available for Windows. -If diffpy.cmi is not yet installed, -we recommend to use `Anaconda Python`_ and set up a dedicated -Anaconda environment *nbcmi* for this tutorial. -This can be accomplished using the following steps:: - - $ conda create -n nbcmi -c diffpy python=2 diffpy.cmi - $ conda activate nbcmi - $ pip install path/to/diffpy.pdfgetx-VERSION.whl - -When these prerequisites are in place, -change to the :file:`n-twothetazero-fit` directory -and open the self documented Jupyter notebook as follows :: - - $ jupyter notebook fit-twothetazero.ipynb - -.. |tthzero| replace:: :confval:`!twothetazero` - -The notebook sets up and executes several PDF refinements and -compares the results from fits on uncorrected data and with -a fitted |tthzero|. -After running all cells the notebook should produce similar graphs -as in the figure below. - -.. figure:: images/twothetazerofit.* - - Refinement of nickel neutron PDF for **(a)** uncorrected data - and **(b)** with a refined zero correction. - The extracted PDFs are plotted as blue circles, - simulated PDFs as red lines and - the difference is plotted offset in green below. - -The final refined zero offset in the notebook should be approximately -0.36°. -The correction produces experimental PDF with a remarkably better fit -residual R\ :sub:`w` which is lowered from (a) 0.18 to (b) 0.05. - - -Small-angle-scattering PDF (sasPDF) ------------------------------------------------------------------------- - -Here we illustrate how to extract a PDF from small-angle-scattering (sas) data using :ref:`pdfgets3 `. -To do this, navigate to the :file:`Au_DNA_NPA` directory in your terminal. -In this folder, you will find :file:`Au_DNA_NPA.chi` and -:file:`Au_DNA_FF.chi` files which correspond to diffraction data from -DNA-capped Au nanoparticle assemblies and from a DNA-capped Au -nanoparticle colloidal solution respectively. Those two files were -measured at X21 beamline, NSLS and published in `D. Nykypanchuk, M. M. -Maye, D. van der Lelie, and O. Gang, Nature 451, 549 (2008). -`_. We thank Prof. Oleg Gang (Columbia University) for sharing this data. The :file:`pdfgets3.cfg` -configuration file specifies processing parameters such as :confval:`formfactorfile` (required by ``sas`` mode), :confval:`qmin`, :confval:`qmax`, and :confval:`mode`. - -To extract the PDF of DNA-capped DNA nanoparticle assemblies :: - - $ pdfgets3 --verbose=info Au_DNA_NPA.chi - - INFO:applying pdfgets3 defaults - INFO:set config.mode = sas - INFO:searching for default config file /home/user/.pdfgets3.cfg - INFO:searching for default config file .pdfgets3.cfg - INFO:searching for default config file pdfgets3.cfg - INFO:loaded default config file pdfgets3.cfg - INFO:reset config.twothetazero = 0.0 - INFO:parsing config file section [DEFAULT] - INFO:set config.dataformat = QA - INFO:set config.backgroundfile = - INFO:set config.datapath = [] - INFO:set config.formfactorfile = Au_DNA_FF.chi - INFO:set config.output = - INFO:set config.outputtypes = fq, gr - INFO:set config.force = yes - INFO:set config.mode = sas - INFO:set config.rpoly = 240.605 - INFO:set config.qmaxinst = 0.075 - INFO:set config.qmin = 0.01 - INFO:set config.qmax = 0.072 - INFO:set config.rmin = 100.0 - INFO:set config.rmax = 5000.0 - INFO:set config.rstep = 1.0 - INFO:set config.plot = iq, fq, gr - INFO:set config.verbose = info - INFO:finished parsing config file - INFO:processing command line options - INFO:set config.verbose = info - INFO:finished with command line options - INFO:using 1 input files from the command line. - INFO:configuring PDFGetter mode 'sas' - INFO:calling config_sas - INFO:started PDF processing. - INFO:processing 'Au_DNA_NPA.chi' - INFO:resolved output file '' as 'Au_DNA_NPA.fq' - INFO:written outpufile Au_DNA_NPA.fq - INFO:resolved output file '' as 'Au_DNA_NPA.gr' - INFO:written outpufile Au_DNA_NPA.gr - INFO:elapsed time: 0.947 - - -This will save two files :file:`Au_DNA_NPA.fq`, :file:`Au_DNA_NPA.gr` in the same directoy for the |FQ| and |Gr| functions. 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-} - -/* -- general body styles --------------------------------------------------- */ - -div.body { - min-width: 450px; - max-width: 800px; -} - -div.body p, div.body dd, div.body li, div.body blockquote { - -moz-hyphens: auto; - -ms-hyphens: auto; - -webkit-hyphens: auto; - hyphens: auto; -} - -a.headerlink { - visibility: hidden; -} - -a.brackets:before, -span.brackets > a:before{ - content: "["; -} - -a.brackets:after, -span.brackets > a:after { - content: "]"; -} - -h1:hover > a.headerlink, -h2:hover > a.headerlink, -h3:hover > a.headerlink, -h4:hover > a.headerlink, -h5:hover > a.headerlink, -h6:hover > a.headerlink, -dt:hover > a.headerlink, -caption:hover > a.headerlink, -p.caption:hover > a.headerlink, -div.code-block-caption:hover > a.headerlink { - visibility: visible; -} - -div.body p.caption { - text-align: inherit; -} - -div.body td { - text-align: left; -} - -.first { - margin-top: 0 !important; -} - -p.rubric { - margin-top: 30px; - font-weight: bold; -} - -img.align-left, .figure.align-left, object.align-left { - clear: left; 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-} - -p.topic-title { - font-size: 1.1em; - font-weight: bold; - margin-top: 10px; -} - -/* -- admonitions ----------------------------------------------------------- */ - -div.admonition { - margin-top: 10px; - margin-bottom: 10px; - padding: 7px; -} - -div.admonition dt { - font-weight: bold; -} - -div.admonition dl { - margin-bottom: 0; -} - -p.admonition-title { - margin: 0px 10px 5px 0px; - font-weight: bold; -} - -div.body p.centered { - text-align: center; - margin-top: 25px; -} - -/* -- tables ---------------------------------------------------------------- */ - -table.docutils { - border: 0; - border-collapse: collapse; -} - -table.align-center { - margin-left: auto; - margin-right: auto; -} - -table.align-default { - margin-left: auto; - margin-right: auto; -} - -table caption span.caption-number { - font-style: italic; -} - -table caption span.caption-text { -} - -table.docutils td, table.docutils th { - padding: 1px 8px 1px 5px; - border-top: 0; - border-left: 0; - border-right: 0; 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-} - -div.code-block-caption span.caption-number { - padding: 0.1em 0.3em; - font-style: italic; -} - -div.code-block-caption span.caption-text { -} - -div.literal-block-wrapper { - padding: 1em 1em 0; -} - -div.literal-block-wrapper div.highlight { - margin: 0; -} - -code.descname { - background-color: transparent; - font-weight: bold; - font-size: 1.2em; -} - -code.descclassname { - background-color: transparent; -} - -code.xref, a code { - background-color: transparent; - font-weight: bold; -} - -h1 code, h2 code, h3 code, h4 code, h5 code, h6 code { - background-color: transparent; -} - -.viewcode-link { - float: right; -} - -.viewcode-back { - float: right; - font-family: sans-serif; -} - -div.viewcode-block:target { - margin: -1px -10px; - padding: 0 10px; -} - -/* -- math display ---------------------------------------------------------- */ - -img.math { - vertical-align: middle; -} - -div.body div.math p { - text-align: center; -} - -span.eqno { - float: right; -} - -span.eqno a.headerlink { - position: relative; - left: 0px; - z-index: 1; -} - -div.math:hover a.headerlink { - visibility: visible; -} - -/* -- printout stylesheet --------------------------------------------------- */ - -@media print { - div.document, - div.documentwrapper, - div.bodywrapper { - margin: 0 !important; - width: 100%; - } - - div.sphinxsidebar, - div.related, - div.footer, - #top-link { - display: none; - } -} \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.1.1/_static/classic.css b/static_root/doc/pdfgetx/2.1.1/_static/classic.css deleted file mode 100644 index 3496a7bb..00000000 --- a/static_root/doc/pdfgetx/2.1.1/_static/classic.css +++ /dev/null @@ -1,271 +0,0 @@ -/* - * classic.css_t - * ~~~~~~~~~~~~~ - * - * Sphinx stylesheet -- classic theme. - * - * :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS. - * :license: BSD, see LICENSE for details. - * - */ - -@import url("basic.css"); - -/* -- page layout ----------------------------------------------------------- */ - -html { - /* CSS hack for macOS's scrollbar (see #1125) */ - background-color: #FFFFFF; -} - -body { - font-family: 'Palatino', 'Palatino Linotype', 'URW Palladio L', 'Century Schoolbook L', 'Georgia', serif; - font-size: 100%; - background-color: white; - color: #000; - margin: 0; - padding: 0; -} - -div.document { - background-color: white; -} - -div.documentwrapper { - float: left; - width: 100%; -} - -div.bodywrapper { - margin: 0 0 0 230px; -} - -div.body { - background-color: white; - color: #222222; - padding: 0 20px 30px 20px; -} - -div.footer { - color: #555555; - width: 100%; - padding: 9px 0 9px 0; - text-align: center; - font-size: 75%; -} - -div.footer a { - color: #555555; - text-decoration: underline; -} - -div.related { - background-color: white; - line-height: 30px; - color: #666666; -} - -div.related a { - color: #444444; -} - -div.sphinxsidebar { -} - -div.sphinxsidebar h3 { - font-family: 'Myriad Pro', 'Trebuchet Ms', 'Segoe UI', sans-serif; - color: #444444; - font-size: 1.4em; - font-weight: normal; - margin: 0; - padding: 0; -} - -div.sphinxsidebar h3 a { - color: #444444; -} - -div.sphinxsidebar h4 { - font-family: 'Myriad Pro', 'Trebuchet Ms', 'Segoe UI', sans-serif; - color: #444444; - font-size: 1.3em; - font-weight: normal; - margin: 5px 0 0 0; - padding: 0; -} - -div.sphinxsidebar p { - color: #444444; -} - -div.sphinxsidebar p.topless { - margin: 5px 10px 10px 10px; -} - -div.sphinxsidebar ul { - margin: 10px; - padding: 0; - color: #444444; -} - -div.sphinxsidebar a { - color: #444444; -} - -div.sphinxsidebar input { - border: 1px solid #444444; - font-family: sans-serif; - font-size: 1em; -} - - -/* for collapsible sidebar */ -div#sidebarbutton { - background-color: #3c6e83; -} - - -/* -- hyperlink styles ------------------------------------------------------ */ - -a { - color: #00608f; - text-decoration: none; -} - -a:visited { - color: #30306f; - text-decoration: none; -} - -a:hover { - text-decoration: underline; -} - - - -/* -- body styles ----------------------------------------------------------- */ - -div.body h1, -div.body h2, -div.body h3, -div.body h4, -div.body h5, -div.body h6 { - font-family: 'Myriad Pro', 'Trebuchet Ms', 'Segoe UI', sans-serif; - background-color: white; - font-weight: normal; - color: #1a1a1a; - border-bottom: 1px solid #ccc; - margin: 20px -20px 10px -20px; - padding: 3px 0 3px 10px; -} - -div.body h1 { margin-top: 0; font-size: 200%; } -div.body h2 { font-size: 160%; } -div.body h3 { font-size: 140%; } -div.body h4 { font-size: 120%; } -div.body h5 { font-size: 110%; } -div.body h6 { font-size: 100%; } - -a.headerlink { - color: #aaaaaa; - font-size: 0.8em; - padding: 0 4px 0 4px; - text-decoration: none; -} - -a.headerlink:hover { - background-color: #aaaaaa; - color: white; -} - -div.body p, div.body dd, div.body li, div.body blockquote { - text-align: justify; - line-height: 130%; -} - -div.admonition p.admonition-title + p { - display: inline; -} - -div.admonition p { - margin-bottom: 5px; -} - -div.admonition pre { - margin-bottom: 5px; -} - -div.admonition ul, div.admonition ol { - margin-bottom: 5px; -} - -div.note { - background-color: #eee; - border: 1px solid #ccc; -} - -div.seealso { - background-color: #ffc; - border: 1px solid #ff6; -} - -div.topic { - background-color: #eee; -} - -div.warning { - background-color: #ffe4e4; - border: 1px solid #f66; -} - -p.admonition-title { - display: inline; -} - -p.admonition-title:after { - content: ":"; -} - -pre { - padding: 5px; - background-color: #eeffcc; - color: #333333; - line-height: 120%; - border: 1px solid #ac9; - border-left: none; - border-right: none; -} - -code { - background-color: #ecf0f3; - padding: 0 1px 0 1px; - font-size: 0.95em; -} - -th, dl.field-list > dt { - background-color: #ede; -} - -.warning code { - background: #efc2c2; -} - -.note code { - background: #d6d6d6; -} - -.viewcode-back { - font-family: 'Palatino', 'Palatino Linotype', 'URW Palladio L', 'Century Schoolbook L', 'Georgia', serif; -} - -div.viewcode-block:target { - background-color: #f4debf; - border-top: 1px solid #ac9; - border-bottom: 1px solid #ac9; -} - -div.code-block-caption { - color: #efefef; - background-color: #1c4e63; -} \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.1.1/_static/copybutton.js b/static_root/doc/pdfgetx/2.1.1/_static/copybutton.js deleted file mode 100644 index ca9f489f..00000000 --- a/static_root/doc/pdfgetx/2.1.1/_static/copybutton.js +++ /dev/null @@ -1,57 +0,0 @@ -$(document).ready(function() { - /* Add a [>>>] button on the top-right corner of code samples to hide - * the >>> and ... prompts and the output and thus make the code - * copyable. */ - var div = $('.highlight-python .highlight,' + - '.highlight-pycon .highlight,' + - '.highlight-python3 .highlight') - var pre = div.find('pre'); - - // get the styles from the current theme - pre.parent().parent().css('position', 'relative'); - var hide_text = 'Hide the prompts and output'; - var show_text = 'Show the prompts and output'; - var border_width = pre.css('border-top-width'); - var border_style = pre.css('border-top-style'); - var border_color = pre.css('border-top-color'); - var button_styles = { - 'cursor':'pointer', 'position': 'absolute', 'top': '0', 'right': '0', - 'border-color': border_color, 'border-style': border_style, - 'border-width': border_width, 'color': border_color, 'text-size': '75%', - 'font-family': 'monospace', 'padding-left': '0.2em', 'padding-right': '0.2em', - 'border-radius': '0 3px 0 0' - } - - // create and add the button to all the code blocks that contain >>> - div.each(function(index) { - var jthis = $(this); - if (jthis.find('.gp').length > 0) { - var button = $('>>>'); - button.css(button_styles) - button.attr('title', hide_text); - jthis.prepend(button); - } - // tracebacks (.gt) contain bare text elements that need to be - // wrapped in a span to work with .nextUntil() (see later) - jthis.find('pre:has(.gt)').contents().filter(function() { - return ((this.nodeType == 3) && (this.data.trim().length > 0)); - }).wrap(''); - }); - - // define the behavior of the button when it's clicked - $('.copybutton').toggle( - function() { - var button = $(this); - button.parent().find('.go, .gp, .gt').hide(); - button.next('pre').find('.gt').nextUntil('.gp, .go').css('visibility', 'hidden'); - button.css('text-decoration', 'line-through'); - button.attr('title', show_text); - }, - function() { - var button = $(this); - button.parent().find('.go, .gp, .gt').show(); - button.next('pre').find('.gt').nextUntil('.gp, .go').css('visibility', 'visible'); - button.css('text-decoration', 'none'); - button.attr('title', hide_text); - }); -}); diff --git a/static_root/doc/pdfgetx/2.1.1/_static/doctools.js b/static_root/doc/pdfgetx/2.1.1/_static/doctools.js deleted file mode 100644 index daccd209..00000000 --- a/static_root/doc/pdfgetx/2.1.1/_static/doctools.js +++ /dev/null @@ -1,315 +0,0 @@ -/* - * doctools.js - * ~~~~~~~~~~~ - * - * Sphinx JavaScript utilities for all documentation. - * - * :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS. - * :license: BSD, see LICENSE for details. - * - */ - -/** - * select a different prefix for underscore - */ -$u = _.noConflict(); - -/** - * make the code below compatible with browsers without - * an installed firebug like debugger -if (!window.console || !console.firebug) { - var names = ["log", "debug", "info", "warn", "error", "assert", "dir", - "dirxml", "group", "groupEnd", "time", "timeEnd", "count", "trace", - "profile", "profileEnd"]; - window.console = {}; - for (var i = 0; i < names.length; ++i) - window.console[names[i]] = function() {}; -} - */ - -/** - * small helper function to urldecode strings - */ -jQuery.urldecode = function(x) { - return decodeURIComponent(x).replace(/\+/g, ' '); -}; - -/** - * small helper function to urlencode strings - */ -jQuery.urlencode = encodeURIComponent; - -/** - * This function returns the parsed url parameters of the - * current request. Multiple values per key are supported, - * it will always return arrays of strings for the value parts. - */ -jQuery.getQueryParameters = function(s) { - if (typeof s === 'undefined') - s = document.location.search; - var parts = s.substr(s.indexOf('?') + 1).split('&'); - var result = {}; - for (var i = 0; i < parts.length; i++) { - var tmp = parts[i].split('=', 2); - var key = jQuery.urldecode(tmp[0]); - var value = jQuery.urldecode(tmp[1]); - if (key in result) - result[key].push(value); - else - result[key] = [value]; - } - return result; -}; - -/** - * highlight a given string on a jquery object by wrapping it in - * span elements with the given class name. - */ -jQuery.fn.highlightText = function(text, className) { - function highlight(node, addItems) { - if (node.nodeType === 3) { - var val = node.nodeValue; - var pos = val.toLowerCase().indexOf(text); - if (pos >= 0 && - !jQuery(node.parentNode).hasClass(className) && - !jQuery(node.parentNode).hasClass("nohighlight")) { - var span; - var isInSVG = jQuery(node).closest("body, svg, foreignObject").is("svg"); - if (isInSVG) { - span = document.createElementNS("http://www.w3.org/2000/svg", "tspan"); - } else { - span = document.createElement("span"); - span.className = className; - } - span.appendChild(document.createTextNode(val.substr(pos, text.length))); - node.parentNode.insertBefore(span, node.parentNode.insertBefore( - document.createTextNode(val.substr(pos + text.length)), - node.nextSibling)); - node.nodeValue = val.substr(0, pos); - if (isInSVG) { - var rect = document.createElementNS("http://www.w3.org/2000/svg", "rect"); - var bbox = node.parentElement.getBBox(); - rect.x.baseVal.value = bbox.x; - rect.y.baseVal.value = bbox.y; - rect.width.baseVal.value = bbox.width; - rect.height.baseVal.value = bbox.height; - rect.setAttribute('class', className); - addItems.push({ - "parent": node.parentNode, - "target": rect}); - } - } - } - else if (!jQuery(node).is("button, select, textarea")) { - jQuery.each(node.childNodes, function() { - highlight(this, addItems); - }); - } - } - var addItems = []; - var result = this.each(function() { - highlight(this, addItems); - }); - for (var i = 0; i < addItems.length; ++i) { - jQuery(addItems[i].parent).before(addItems[i].target); - } - return result; -}; - -/* - * backward compatibility for jQuery.browser - * This will be supported until firefox bug is fixed. - */ -if (!jQuery.browser) { - jQuery.uaMatch = function(ua) { - ua = ua.toLowerCase(); - - var match = /(chrome)[ \/]([\w.]+)/.exec(ua) || - /(webkit)[ \/]([\w.]+)/.exec(ua) || - /(opera)(?:.*version|)[ \/]([\w.]+)/.exec(ua) || - /(msie) ([\w.]+)/.exec(ua) || - ua.indexOf("compatible") < 0 && /(mozilla)(?:.*? rv:([\w.]+)|)/.exec(ua) || - []; - - return { - browser: match[ 1 ] || "", - version: match[ 2 ] || "0" - }; - }; - jQuery.browser = {}; - jQuery.browser[jQuery.uaMatch(navigator.userAgent).browser] = true; -} - -/** - * Small JavaScript module for the documentation. - */ -var Documentation = { - - init : function() { - this.fixFirefoxAnchorBug(); - this.highlightSearchWords(); - this.initIndexTable(); - if (DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS) { - this.initOnKeyListeners(); - } - }, - - /** - * i18n support - */ - TRANSLATIONS : {}, - PLURAL_EXPR : function(n) { return n === 1 ? 0 : 1; }, - LOCALE : 'unknown', - - // gettext and ngettext don't access this so that the functions - // can safely bound to a different name (_ = Documentation.gettext) - gettext : function(string) { - var translated = Documentation.TRANSLATIONS[string]; - if (typeof translated === 'undefined') - return string; - return (typeof translated === 'string') ? translated : translated[0]; - }, - - ngettext : function(singular, plural, n) { - var translated = Documentation.TRANSLATIONS[singular]; - if (typeof translated === 'undefined') - return (n == 1) ? singular : plural; - return translated[Documentation.PLURALEXPR(n)]; - }, - - addTranslations : function(catalog) { - for (var key in catalog.messages) - this.TRANSLATIONS[key] = catalog.messages[key]; - this.PLURAL_EXPR = new Function('n', 'return +(' + catalog.plural_expr + ')'); - this.LOCALE = catalog.locale; - }, - - /** - * add context elements like header anchor links - */ - addContextElements : function() { - $('div[id] > :header:first').each(function() { - $('\u00B6'). - attr('href', '#' + this.id). - attr('title', _('Permalink to this headline')). - appendTo(this); - }); - $('dt[id]').each(function() { - $('\u00B6'). - attr('href', '#' + this.id). - attr('title', _('Permalink to this definition')). - appendTo(this); - }); - }, - - /** - * workaround a firefox stupidity - * see: https://bugzilla.mozilla.org/show_bug.cgi?id=645075 - */ - fixFirefoxAnchorBug : function() { - if (document.location.hash && $.browser.mozilla) - window.setTimeout(function() { - document.location.href += ''; - }, 10); - }, - - /** - * highlight the search words provided in the url in the text - */ - highlightSearchWords : function() { - var params = $.getQueryParameters(); - var terms = (params.highlight) ? params.highlight[0].split(/\s+/) : []; - if (terms.length) { - var body = $('div.body'); - if (!body.length) { - body = $('body'); - } - window.setTimeout(function() { - $.each(terms, function() { - body.highlightText(this.toLowerCase(), 'highlighted'); - }); - }, 10); - $('

    ' + _('Hide Search Matches') + '

    ') - .appendTo($('#searchbox')); - } - }, - - /** - * init the domain index toggle buttons - */ - initIndexTable : function() { - var togglers = $('img.toggler').click(function() { - var src = $(this).attr('src'); - var idnum = $(this).attr('id').substr(7); - $('tr.cg-' + idnum).toggle(); - if (src.substr(-9) === 'minus.png') - $(this).attr('src', src.substr(0, src.length-9) + 'plus.png'); - else - $(this).attr('src', src.substr(0, src.length-8) + 'minus.png'); - }).css('display', ''); - if (DOCUMENTATION_OPTIONS.COLLAPSE_INDEX) { - togglers.click(); - } - }, - - /** - * helper function to hide the search marks again - */ - hideSearchWords : function() { - $('#searchbox .highlight-link').fadeOut(300); - $('span.highlighted').removeClass('highlighted'); - }, - - /** - * make the url absolute - */ - makeURL : function(relativeURL) { - return DOCUMENTATION_OPTIONS.URL_ROOT + '/' + relativeURL; - }, - - /** - * get the current relative url - */ - getCurrentURL : function() { - var path = document.location.pathname; - var parts = path.split(/\//); - $.each(DOCUMENTATION_OPTIONS.URL_ROOT.split(/\//), function() { - if (this === '..') - parts.pop(); - }); - var url = parts.join('/'); - return path.substring(url.lastIndexOf('/') + 1, path.length - 1); - }, - - initOnKeyListeners: function() { - $(document).keydown(function(event) { - var activeElementType = document.activeElement.tagName; - // don't navigate when in search box or textarea - if (activeElementType !== 'TEXTAREA' && activeElementType !== 'INPUT' && activeElementType !== 'SELECT' - && !event.altKey && !event.ctrlKey && !event.metaKey && !event.shiftKey) { - switch (event.keyCode) { - case 37: // left - var prevHref = $('link[rel="prev"]').prop('href'); - if (prevHref) { - window.location.href = prevHref; - return false; - } - case 39: // right - var nextHref = $('link[rel="next"]').prop('href'); - if (nextHref) { - window.location.href = nextHref; - return false; - } - } - } - }); - } -}; - -// quick alias for translations -_ = Documentation.gettext; - -$(document).ready(function() { - Documentation.init(); -}); diff --git a/static_root/doc/pdfgetx/2.1.1/_static/documentation_options.js b/static_root/doc/pdfgetx/2.1.1/_static/documentation_options.js deleted file mode 100644 index 7c77e4bd..00000000 --- a/static_root/doc/pdfgetx/2.1.1/_static/documentation_options.js +++ /dev/null @@ -1,11 +0,0 @@ -var DOCUMENTATION_OPTIONS = { - URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'), - VERSION: '2.1.1', - LANGUAGE: 'None', - COLLAPSE_INDEX: false, - BUILDER: 'html', - FILE_SUFFIX: '.html', - HAS_SOURCE: true, - SOURCELINK_SUFFIX: '.txt', - NAVIGATION_WITH_KEYS: true -}; \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.1.1/_static/favicon.png b/static_root/doc/pdfgetx/2.1.1/_static/favicon.png deleted file mode 100644 index 93e4a02c..00000000 Binary files a/static_root/doc/pdfgetx/2.1.1/_static/favicon.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.1.1/_static/file.png b/static_root/doc/pdfgetx/2.1.1/_static/file.png deleted file mode 100644 index a858a410..00000000 Binary files a/static_root/doc/pdfgetx/2.1.1/_static/file.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.1.1/_static/jquery-3.4.1.js b/static_root/doc/pdfgetx/2.1.1/_static/jquery-3.4.1.js deleted file mode 100644 index 773ad95c..00000000 --- a/static_root/doc/pdfgetx/2.1.1/_static/jquery-3.4.1.js +++ /dev/null @@ -1,10598 +0,0 @@ -/*! - * jQuery JavaScript Library v3.4.1 - * https://jquery.com/ - * - * Includes Sizzle.js - * https://sizzlejs.com/ - * - * Copyright JS Foundation and other contributors - * Released under the MIT license - * https://jquery.org/license - * - * Date: 2019-05-01T21:04Z - */ -( function( global, factory ) { - - "use strict"; - - if ( typeof module === "object" && typeof module.exports === "object" ) { - - // For CommonJS and CommonJS-like environments where a proper `window` - // is present, execute the factory and get jQuery. - // For environments that do not have a `window` with a `document` - // (such as Node.js), expose a factory as module.exports. - // This accentuates the need for the creation of a real `window`. - // e.g. var jQuery = require("jquery")(window); - // See ticket #14549 for more info. - module.exports = global.document ? - factory( global, true ) : - function( w ) { - if ( !w.document ) { - throw new Error( "jQuery requires a window with a document" ); - } - return factory( w ); - }; - } else { - factory( global ); - } - -// Pass this if window is not defined yet -} )( typeof window !== "undefined" ? window : this, function( window, noGlobal ) { - -// Edge <= 12 - 13+, Firefox <=18 - 45+, IE 10 - 11, Safari 5.1 - 9+, iOS 6 - 9.1 -// throw exceptions when non-strict code (e.g., ASP.NET 4.5) accesses strict mode -// arguments.callee.caller (trac-13335). But as of jQuery 3.0 (2016), strict mode should be common -// enough that all such attempts are guarded in a try block. -"use strict"; - -var arr = []; - -var document = window.document; - -var getProto = Object.getPrototypeOf; - -var slice = arr.slice; - -var concat = arr.concat; - -var push = arr.push; - -var indexOf = arr.indexOf; - -var class2type = {}; - -var toString = class2type.toString; - -var hasOwn = class2type.hasOwnProperty; - -var fnToString = hasOwn.toString; - -var ObjectFunctionString = fnToString.call( Object ); - -var support = {}; - -var isFunction = function isFunction( obj ) { - - // Support: Chrome <=57, Firefox <=52 - // In some browsers, typeof returns "function" for HTML elements - // (i.e., `typeof document.createElement( "object" ) === "function"`). - // We don't want to classify *any* DOM node as a function. - return typeof obj === "function" && typeof obj.nodeType !== "number"; - }; - - -var isWindow = function isWindow( obj ) { - return obj != null && obj === obj.window; - }; - - - - - var preservedScriptAttributes = { - type: true, - src: true, - nonce: true, - noModule: true - }; - - function DOMEval( code, node, doc ) { - doc = doc || document; - - var i, val, - script = doc.createElement( "script" ); - - script.text = code; - if ( node ) { - for ( i in preservedScriptAttributes ) { - - // Support: Firefox 64+, Edge 18+ - // Some browsers don't support the "nonce" property on scripts. - // On the other hand, just using `getAttribute` is not enough as - // the `nonce` attribute is reset to an empty string whenever it - // becomes browsing-context connected. - // See https://github.com/whatwg/html/issues/2369 - // See https://html.spec.whatwg.org/#nonce-attributes - // The `node.getAttribute` check was added for the sake of - // `jQuery.globalEval` so that it can fake a nonce-containing node - // via an object. - val = node[ i ] || node.getAttribute && node.getAttribute( i ); - if ( val ) { - script.setAttribute( i, val ); - } - } - } - doc.head.appendChild( script ).parentNode.removeChild( script ); - } - - -function toType( obj ) { - if ( obj == null ) { - return obj + ""; - } - - // Support: Android <=2.3 only (functionish RegExp) - return typeof obj === "object" || typeof obj === "function" ? - class2type[ toString.call( obj ) ] || "object" : - typeof obj; -} -/* global Symbol */ -// Defining this global in .eslintrc.json would create a danger of using the global -// unguarded in another place, it seems safer to define global only for this module - - - -var - version = "3.4.1", - - // Define a local copy of jQuery - jQuery = function( selector, context ) { - - // The jQuery object is actually just the init constructor 'enhanced' - // Need init if jQuery is called (just allow error to be thrown if not included) - return new jQuery.fn.init( selector, context ); - }, - - // Support: Android <=4.0 only - // Make sure we trim BOM and NBSP - rtrim = /^[\s\uFEFF\xA0]+|[\s\uFEFF\xA0]+$/g; - -jQuery.fn = jQuery.prototype = { - - // The current version of jQuery being used - jquery: version, - - constructor: jQuery, - - // The default length of a jQuery object is 0 - length: 0, - - toArray: function() { - return slice.call( this ); - }, - - // Get the Nth element in the matched element set OR - // Get the whole matched element set as a clean array - get: function( num ) { - - // Return all the elements in a clean array - if ( num == null ) { - return slice.call( this ); - } - - // Return just the one element from the set - return num < 0 ? this[ num + this.length ] : this[ num ]; - }, - - // Take an array of elements and push it onto the stack - // (returning the new matched element set) - pushStack: function( elems ) { - - // Build a new jQuery matched element set - var ret = jQuery.merge( this.constructor(), elems ); - - // Add the old object onto the stack (as a reference) - ret.prevObject = this; - - // Return the newly-formed element set - return ret; - }, - - // Execute a callback for every element in the matched set. - each: function( callback ) { - return jQuery.each( this, callback ); - }, - - map: function( callback ) { - return this.pushStack( jQuery.map( this, function( elem, i ) { - return callback.call( elem, i, elem ); - } ) ); - }, - - slice: function() { - return this.pushStack( slice.apply( this, arguments ) ); - }, - - first: function() { - return this.eq( 0 ); - }, - - last: function() { - return this.eq( -1 ); - }, - - eq: function( i ) { - var len = this.length, - j = +i + ( i < 0 ? len : 0 ); - return this.pushStack( j >= 0 && j < len ? [ this[ j ] ] : [] ); - }, - - end: function() { - return this.prevObject || this.constructor(); - }, - - // For internal use only. - // Behaves like an Array's method, not like a jQuery method. - push: push, - sort: arr.sort, - splice: arr.splice -}; - -jQuery.extend = jQuery.fn.extend = function() { - var options, name, src, copy, copyIsArray, clone, - target = arguments[ 0 ] || {}, - i = 1, - length = arguments.length, - deep = false; - - // Handle a deep copy situation - if ( typeof target === "boolean" ) { - deep = target; - - // Skip the boolean and the target - target = arguments[ i ] || {}; - i++; - } - - // Handle case when target is a string or something (possible in deep copy) - if ( typeof target !== "object" && !isFunction( target ) ) { - target = {}; - } - - // Extend jQuery itself if only one argument is passed - if ( i === length ) { - target = this; - i--; - } - - for ( ; i < length; i++ ) { - - // Only deal with non-null/undefined values - if ( ( options = arguments[ i ] ) != null ) { - - // Extend the base object - for ( name in options ) { - copy = options[ name ]; - - // Prevent Object.prototype pollution - // Prevent never-ending loop - if ( name === "__proto__" || target === copy ) { - continue; - } - - // Recurse if we're merging plain objects or arrays - if ( deep && copy && ( jQuery.isPlainObject( copy ) || - ( copyIsArray = Array.isArray( copy ) ) ) ) { - src = target[ name ]; - - // Ensure proper type for the source value - if ( copyIsArray && !Array.isArray( src ) ) { - clone = []; - } else if ( !copyIsArray && !jQuery.isPlainObject( src ) ) { - clone = {}; - } else { - clone = src; - } - copyIsArray = false; - - // Never move original objects, clone them - target[ name ] = jQuery.extend( deep, clone, copy ); - - // Don't bring in undefined values - } else if ( copy !== undefined ) { - target[ name ] = copy; - } - } - } - } - - // Return the modified object - return target; -}; - -jQuery.extend( { - - // Unique for each copy of jQuery on the page - expando: "jQuery" + ( version + Math.random() ).replace( /\D/g, "" ), - - // Assume jQuery is ready without the ready module - isReady: true, - - error: function( msg ) { - throw new Error( msg ); - }, - - noop: function() {}, - - isPlainObject: function( obj ) { - var proto, Ctor; - - // Detect obvious negatives - // Use toString instead of jQuery.type to catch host objects - if ( !obj || toString.call( obj ) !== "[object Object]" ) { - return false; - } - - proto = getProto( obj ); - - // Objects with no prototype (e.g., `Object.create( null )`) are plain - if ( !proto ) { - return true; - } - - // Objects with prototype are plain iff they were constructed by a global Object function - Ctor = hasOwn.call( proto, "constructor" ) && proto.constructor; - return typeof Ctor === "function" && fnToString.call( Ctor ) === ObjectFunctionString; - }, - - isEmptyObject: function( obj ) { - var name; - - for ( name in obj ) { - return false; - } - return true; - }, - - // Evaluates a script in a global context - globalEval: function( code, options ) { - DOMEval( code, { nonce: options && options.nonce } ); - }, - - each: function( obj, callback ) { - var length, i = 0; - - if ( isArrayLike( obj ) ) { - length = obj.length; - for ( ; i < length; i++ ) { - if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) { - break; - } - } - } else { - for ( i in obj ) { - if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) { - break; - } - } - } - - return obj; - }, - - // Support: Android <=4.0 only - trim: function( text ) { - return text == null ? - "" : - ( text + "" ).replace( rtrim, "" ); - }, - - // results is for internal usage only - makeArray: function( arr, results ) { - var ret = results || []; - - if ( arr != null ) { - if ( isArrayLike( Object( arr ) ) ) { - jQuery.merge( ret, - typeof arr === "string" ? - [ arr ] : arr - ); - } else { - push.call( ret, arr ); - } - } - - return ret; - }, - - inArray: function( elem, arr, i ) { - return arr == null ? -1 : indexOf.call( arr, elem, i ); - }, - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - merge: function( first, second ) { - var len = +second.length, - j = 0, - i = first.length; - - for ( ; j < len; j++ ) { - first[ i++ ] = second[ j ]; - } - - first.length = i; - - return first; - }, - - grep: function( elems, callback, invert ) { - var callbackInverse, - matches = [], - i = 0, - length = elems.length, - callbackExpect = !invert; - - // Go through the array, only saving the items - // that pass the validator function - for ( ; i < length; i++ ) { - callbackInverse = !callback( elems[ i ], i ); - if ( callbackInverse !== callbackExpect ) { - matches.push( elems[ i ] ); - } - } - - return matches; - }, - - // arg is for internal usage only - map: function( elems, callback, arg ) { - var length, value, - i = 0, - ret = []; - - // Go through the array, translating each of the items to their new values - if ( isArrayLike( elems ) ) { - length = elems.length; - for ( ; i < length; i++ ) { - value = callback( elems[ i ], i, arg ); - - if ( value != null ) { - ret.push( value ); - } - } - - // Go through every key on the object, - } else { - for ( i in elems ) { - value = callback( elems[ i ], i, arg ); - - if ( value != null ) { - ret.push( value ); - } - } - } - - // Flatten any nested arrays - return concat.apply( [], ret ); - }, - - // A global GUID counter for objects - guid: 1, - - // jQuery.support is not used in Core but other projects attach their - // properties to it so it needs to exist. - support: support -} ); - -if ( typeof Symbol === "function" ) { - jQuery.fn[ Symbol.iterator ] = arr[ Symbol.iterator ]; -} - -// Populate the class2type map -jQuery.each( "Boolean Number String Function Array Date RegExp Object Error Symbol".split( " " ), -function( i, name ) { - class2type[ "[object " + name + "]" ] = name.toLowerCase(); -} ); - -function isArrayLike( obj ) { - - // Support: real iOS 8.2 only (not reproducible in simulator) - // `in` check used to prevent JIT error (gh-2145) - // hasOwn isn't used here due to false negatives - // regarding Nodelist length in IE - var length = !!obj && "length" in obj && obj.length, - type = toType( obj ); - - if ( isFunction( obj ) || isWindow( obj ) ) { - return false; - } - - return type === "array" || length === 0 || - typeof length === "number" && length > 0 && ( length - 1 ) in obj; -} -var Sizzle = -/*! - * Sizzle CSS Selector Engine v2.3.4 - * https://sizzlejs.com/ - * - * Copyright JS Foundation and other contributors - * Released under the MIT license - * https://js.foundation/ - * - * Date: 2019-04-08 - */ -(function( window ) { - -var i, - support, - Expr, - getText, - isXML, - tokenize, - compile, - select, - outermostContext, - sortInput, - hasDuplicate, - - // Local document vars - setDocument, - document, - docElem, - documentIsHTML, - rbuggyQSA, - rbuggyMatches, - matches, - contains, - - // Instance-specific data - expando = "sizzle" + 1 * new Date(), - preferredDoc = window.document, - dirruns = 0, - done = 0, - classCache = createCache(), - tokenCache = createCache(), - compilerCache = createCache(), - nonnativeSelectorCache = createCache(), - sortOrder = function( a, b ) { - if ( a === b ) { - hasDuplicate = true; - } - return 0; - }, - - // Instance methods - hasOwn = ({}).hasOwnProperty, - arr = [], - pop = arr.pop, - push_native = arr.push, - push = arr.push, - slice = arr.slice, - // Use a stripped-down indexOf as it's faster than native - // https://jsperf.com/thor-indexof-vs-for/5 - indexOf = function( list, elem ) { - var i = 0, - len = list.length; - for ( ; i < len; i++ ) { - if ( list[i] === elem ) { - return i; - } - } - return -1; - }, - - booleans = "checked|selected|async|autofocus|autoplay|controls|defer|disabled|hidden|ismap|loop|multiple|open|readonly|required|scoped", - - // Regular expressions - - // http://www.w3.org/TR/css3-selectors/#whitespace - whitespace = "[\\x20\\t\\r\\n\\f]", - - // http://www.w3.org/TR/CSS21/syndata.html#value-def-identifier - identifier = "(?:\\\\.|[\\w-]|[^\0-\\xa0])+", - - // Attribute selectors: http://www.w3.org/TR/selectors/#attribute-selectors - attributes = "\\[" + whitespace + "*(" + identifier + ")(?:" + whitespace + - // Operator (capture 2) - "*([*^$|!~]?=)" + whitespace + - // "Attribute values must be CSS identifiers [capture 5] or strings [capture 3 or capture 4]" - "*(?:'((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\"|(" + identifier + "))|)" + whitespace + - "*\\]", - - pseudos = ":(" + identifier + ")(?:\\((" + - // To reduce the number of selectors needing tokenize in the preFilter, prefer arguments: - // 1. quoted (capture 3; capture 4 or capture 5) - "('((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\")|" + - // 2. simple (capture 6) - "((?:\\\\.|[^\\\\()[\\]]|" + attributes + ")*)|" + - // 3. anything else (capture 2) - ".*" + - ")\\)|)", - - // Leading and non-escaped trailing whitespace, capturing some non-whitespace characters preceding the latter - rwhitespace = new RegExp( whitespace + "+", "g" ), - rtrim = new RegExp( "^" + whitespace + "+|((?:^|[^\\\\])(?:\\\\.)*)" + whitespace + "+$", "g" ), - - rcomma = new RegExp( "^" + whitespace + "*," + whitespace + "*" ), - rcombinators = new RegExp( "^" + whitespace + "*([>+~]|" + whitespace + ")" + whitespace + "*" ), - rdescend = new RegExp( whitespace + "|>" ), - - rpseudo = new RegExp( pseudos ), - ridentifier = new RegExp( "^" + identifier + "$" ), - - matchExpr = { - "ID": new RegExp( "^#(" + identifier + ")" ), - "CLASS": new RegExp( "^\\.(" + identifier + ")" ), - "TAG": new RegExp( "^(" + identifier + "|[*])" ), - "ATTR": new RegExp( "^" + attributes ), - "PSEUDO": new RegExp( "^" + pseudos ), - "CHILD": new RegExp( "^:(only|first|last|nth|nth-last)-(child|of-type)(?:\\(" + whitespace + - "*(even|odd|(([+-]|)(\\d*)n|)" + whitespace + "*(?:([+-]|)" + whitespace + - "*(\\d+)|))" + whitespace + "*\\)|)", "i" ), - "bool": new RegExp( "^(?:" + booleans + ")$", "i" ), - // For use in libraries implementing .is() - // We use this for POS matching in `select` - "needsContext": new RegExp( "^" + whitespace + "*[>+~]|:(even|odd|eq|gt|lt|nth|first|last)(?:\\(" + - whitespace + "*((?:-\\d)?\\d*)" + whitespace + "*\\)|)(?=[^-]|$)", "i" ) - }, - - rhtml = /HTML$/i, - rinputs = /^(?:input|select|textarea|button)$/i, - rheader = /^h\d$/i, - - rnative = /^[^{]+\{\s*\[native \w/, - - // Easily-parseable/retrievable ID or TAG or CLASS selectors - rquickExpr = /^(?:#([\w-]+)|(\w+)|\.([\w-]+))$/, - - rsibling = /[+~]/, - - // CSS escapes - // http://www.w3.org/TR/CSS21/syndata.html#escaped-characters - runescape = new RegExp( "\\\\([\\da-f]{1,6}" + whitespace + "?|(" + whitespace + ")|.)", "ig" ), - funescape = function( _, escaped, escapedWhitespace ) { - var high = "0x" + escaped - 0x10000; - // NaN means non-codepoint - // Support: Firefox<24 - // Workaround erroneous numeric interpretation of +"0x" - return high !== high || escapedWhitespace ? - escaped : - high < 0 ? - // BMP codepoint - String.fromCharCode( high + 0x10000 ) : - // Supplemental Plane codepoint (surrogate pair) - String.fromCharCode( high >> 10 | 0xD800, high & 0x3FF | 0xDC00 ); - }, - - // CSS string/identifier serialization - // https://drafts.csswg.org/cssom/#common-serializing-idioms - rcssescape = /([\0-\x1f\x7f]|^-?\d)|^-$|[^\0-\x1f\x7f-\uFFFF\w-]/g, - fcssescape = function( ch, asCodePoint ) { - if ( asCodePoint ) { - - // U+0000 NULL becomes U+FFFD REPLACEMENT CHARACTER - if ( ch === "\0" ) { - return "\uFFFD"; - } - - // Control characters and (dependent upon position) numbers get escaped as code points - return ch.slice( 0, -1 ) + "\\" + ch.charCodeAt( ch.length - 1 ).toString( 16 ) + " "; - } - - // Other potentially-special ASCII characters get backslash-escaped - return "\\" + ch; - }, - - // Used for iframes - // See setDocument() - // Removing the function wrapper causes a "Permission Denied" - // error in IE - unloadHandler = function() { - setDocument(); - }, - - inDisabledFieldset = addCombinator( - function( elem ) { - return elem.disabled === true && elem.nodeName.toLowerCase() === "fieldset"; - }, - { dir: "parentNode", next: "legend" } - ); - -// Optimize for push.apply( _, NodeList ) -try { - push.apply( - (arr = slice.call( preferredDoc.childNodes )), - preferredDoc.childNodes - ); - // Support: Android<4.0 - // Detect silently failing push.apply - arr[ preferredDoc.childNodes.length ].nodeType; -} catch ( e ) { - push = { apply: arr.length ? - - // Leverage slice if possible - function( target, els ) { - push_native.apply( target, slice.call(els) ); - } : - - // Support: IE<9 - // Otherwise append directly - function( target, els ) { - var j = target.length, - i = 0; - // Can't trust NodeList.length - while ( (target[j++] = els[i++]) ) {} - target.length = j - 1; - } - }; -} - -function Sizzle( selector, context, results, seed ) { - var m, i, elem, nid, match, groups, newSelector, - newContext = context && context.ownerDocument, - - // nodeType defaults to 9, since context defaults to document - nodeType = context ? context.nodeType : 9; - - results = results || []; - - // Return early from calls with invalid selector or context - if ( typeof selector !== "string" || !selector || - nodeType !== 1 && nodeType !== 9 && nodeType !== 11 ) { - - return results; - } - - // Try to shortcut find operations (as opposed to filters) in HTML documents - if ( !seed ) { - - if ( ( context ? context.ownerDocument || context : preferredDoc ) !== document ) { - setDocument( context ); - } - context = context || document; - - if ( documentIsHTML ) { - - // If the selector is sufficiently simple, try using a "get*By*" DOM method - // (excepting DocumentFragment context, where the methods don't exist) - if ( nodeType !== 11 && (match = rquickExpr.exec( selector )) ) { - - // ID selector - if ( (m = match[1]) ) { - - // Document context - if ( nodeType === 9 ) { - if ( (elem = context.getElementById( m )) ) { - - // Support: IE, Opera, Webkit - // TODO: identify versions - // getElementById can match elements by name instead of ID - if ( elem.id === m ) { - results.push( elem ); - return results; - } - } else { - return results; - } - - // Element context - } else { - - // Support: IE, Opera, Webkit - // TODO: identify versions - // getElementById can match elements by name instead of ID - if ( newContext && (elem = newContext.getElementById( m )) && - contains( context, elem ) && - elem.id === m ) { - - results.push( elem ); - return results; - } - } - - // Type selector - } else if ( match[2] ) { - push.apply( results, context.getElementsByTagName( selector ) ); - return results; - - // Class selector - } else if ( (m = match[3]) && support.getElementsByClassName && - context.getElementsByClassName ) { - - push.apply( results, context.getElementsByClassName( m ) ); - return results; - } - } - - // Take advantage of querySelectorAll - if ( support.qsa && - !nonnativeSelectorCache[ selector + " " ] && - (!rbuggyQSA || !rbuggyQSA.test( selector )) && - - // Support: IE 8 only - // Exclude object elements - (nodeType !== 1 || context.nodeName.toLowerCase() !== "object") ) { - - newSelector = selector; - newContext = context; - - // qSA considers elements outside a scoping root when evaluating child or - // descendant combinators, which is not what we want. - // In such cases, we work around the behavior by prefixing every selector in the - // list with an ID selector referencing the scope context. - // Thanks to Andrew Dupont for this technique. - if ( nodeType === 1 && rdescend.test( selector ) ) { - - // Capture the context ID, setting it first if necessary - if ( (nid = context.getAttribute( "id" )) ) { - nid = nid.replace( rcssescape, fcssescape ); - } else { - context.setAttribute( "id", (nid = expando) ); - } - - // Prefix every selector in the list - groups = tokenize( selector ); - i = groups.length; - while ( i-- ) { - groups[i] = "#" + nid + " " + toSelector( groups[i] ); - } - newSelector = groups.join( "," ); - - // Expand context for sibling selectors - newContext = rsibling.test( selector ) && testContext( context.parentNode ) || - context; - } - - try { - push.apply( results, - newContext.querySelectorAll( newSelector ) - ); - return results; - } catch ( qsaError ) { - nonnativeSelectorCache( selector, true ); - } finally { - if ( nid === expando ) { - context.removeAttribute( "id" ); - } - } - } - } - } - - // All others - return select( selector.replace( rtrim, "$1" ), context, results, seed ); -} - -/** - * Create key-value caches of limited size - * @returns {function(string, object)} Returns the Object data after storing it on itself with - * property name the (space-suffixed) string and (if the cache is larger than Expr.cacheLength) - * deleting the oldest entry - */ -function createCache() { - var keys = []; - - function cache( key, value ) { - // Use (key + " ") to avoid collision with native prototype properties (see Issue #157) - if ( keys.push( key + " " ) > Expr.cacheLength ) { - // Only keep the most recent entries - delete cache[ keys.shift() ]; - } - return (cache[ key + " " ] = value); - } - return cache; -} - -/** - * Mark a function for special use by Sizzle - * @param {Function} fn The function to mark - */ -function markFunction( fn ) { - fn[ expando ] = true; - return fn; -} - -/** - * Support testing using an element - * @param {Function} fn Passed the created element and returns a boolean result - */ -function assert( fn ) { - var el = document.createElement("fieldset"); - - try { - return !!fn( el ); - } catch (e) { - return false; - } finally { - // Remove from its parent by default - if ( el.parentNode ) { - el.parentNode.removeChild( el ); - } - // release memory in IE - el = null; - } -} - -/** - * Adds the same handler for all of the specified attrs - * @param {String} attrs Pipe-separated list of attributes - * @param {Function} handler The method that will be applied - */ -function addHandle( attrs, handler ) { - var arr = attrs.split("|"), - i = arr.length; - - while ( i-- ) { - Expr.attrHandle[ arr[i] ] = handler; - } -} - -/** - * Checks document order of two siblings - * @param {Element} a - * @param {Element} b - * @returns {Number} Returns less than 0 if a precedes b, greater than 0 if a follows b - */ -function siblingCheck( a, b ) { - var cur = b && a, - diff = cur && a.nodeType === 1 && b.nodeType === 1 && - a.sourceIndex - b.sourceIndex; - - // Use IE sourceIndex if available on both nodes - if ( diff ) { - return diff; - } - - // Check if b follows a - if ( cur ) { - while ( (cur = cur.nextSibling) ) { - if ( cur === b ) { - return -1; - } - } - } - - return a ? 1 : -1; -} - -/** - * Returns a function to use in pseudos for input types - * @param {String} type - */ -function createInputPseudo( type ) { - return function( elem ) { - var name = elem.nodeName.toLowerCase(); - return name === "input" && elem.type === type; - }; -} - -/** - * Returns a function to use in pseudos for buttons - * @param {String} type - */ -function createButtonPseudo( type ) { - return function( elem ) { - var name = elem.nodeName.toLowerCase(); - return (name === "input" || name === "button") && elem.type === type; - }; -} - -/** - * Returns a function to use in pseudos for :enabled/:disabled - * @param {Boolean} disabled true for :disabled; false for :enabled - */ -function createDisabledPseudo( disabled ) { - - // Known :disabled false positives: fieldset[disabled] > legend:nth-of-type(n+2) :can-disable - return function( elem ) { - - // Only certain elements can match :enabled or :disabled - // https://html.spec.whatwg.org/multipage/scripting.html#selector-enabled - // https://html.spec.whatwg.org/multipage/scripting.html#selector-disabled - if ( "form" in elem ) { - - // Check for inherited disabledness on relevant non-disabled elements: - // * listed form-associated elements in a disabled fieldset - // https://html.spec.whatwg.org/multipage/forms.html#category-listed - // https://html.spec.whatwg.org/multipage/forms.html#concept-fe-disabled - // * option elements in a disabled optgroup - // https://html.spec.whatwg.org/multipage/forms.html#concept-option-disabled - // All such elements have a "form" property. - if ( elem.parentNode && elem.disabled === false ) { - - // Option elements defer to a parent optgroup if present - if ( "label" in elem ) { - if ( "label" in elem.parentNode ) { - return elem.parentNode.disabled === disabled; - } else { - return elem.disabled === disabled; - } - } - - // Support: IE 6 - 11 - // Use the isDisabled shortcut property to check for disabled fieldset ancestors - return elem.isDisabled === disabled || - - // Where there is no isDisabled, check manually - /* jshint -W018 */ - elem.isDisabled !== !disabled && - inDisabledFieldset( elem ) === disabled; - } - - return elem.disabled === disabled; - - // Try to winnow out elements that can't be disabled before trusting the disabled property. - // Some victims get caught in our net (label, legend, menu, track), but it shouldn't - // even exist on them, let alone have a boolean value. - } else if ( "label" in elem ) { - return elem.disabled === disabled; - } - - // Remaining elements are neither :enabled nor :disabled - return false; - }; -} - -/** - * Returns a function to use in pseudos for positionals - * @param {Function} fn - */ -function createPositionalPseudo( fn ) { - return markFunction(function( argument ) { - argument = +argument; - return markFunction(function( seed, matches ) { - var j, - matchIndexes = fn( [], seed.length, argument ), - i = matchIndexes.length; - - // Match elements found at the specified indexes - while ( i-- ) { - if ( seed[ (j = matchIndexes[i]) ] ) { - seed[j] = !(matches[j] = seed[j]); - } - } - }); - }); -} - -/** - * Checks a node for validity as a Sizzle context - * @param {Element|Object=} context - * @returns {Element|Object|Boolean} The input node if acceptable, otherwise a falsy value - */ -function testContext( context ) { - return context && typeof context.getElementsByTagName !== "undefined" && context; -} - -// Expose support vars for convenience -support = Sizzle.support = {}; - -/** - * Detects XML nodes - * @param {Element|Object} elem An element or a document - * @returns {Boolean} True iff elem is a non-HTML XML node - */ -isXML = Sizzle.isXML = function( elem ) { - var namespace = elem.namespaceURI, - docElem = (elem.ownerDocument || elem).documentElement; - - // Support: IE <=8 - // Assume HTML when documentElement doesn't yet exist, such as inside loading iframes - // https://bugs.jquery.com/ticket/4833 - return !rhtml.test( namespace || docElem && docElem.nodeName || "HTML" ); -}; - -/** - * Sets document-related variables once based on the current document - * @param {Element|Object} [doc] An element or document object to use to set the document - * @returns {Object} Returns the current document - */ -setDocument = Sizzle.setDocument = function( node ) { - var hasCompare, subWindow, - doc = node ? node.ownerDocument || node : preferredDoc; - - // Return early if doc is invalid or already selected - if ( doc === document || doc.nodeType !== 9 || !doc.documentElement ) { - return document; - } - - // Update global variables - document = doc; - docElem = document.documentElement; - documentIsHTML = !isXML( document ); - - // Support: IE 9-11, Edge - // Accessing iframe documents after unload throws "permission denied" errors (jQuery #13936) - if ( preferredDoc !== document && - (subWindow = document.defaultView) && subWindow.top !== subWindow ) { - - // Support: IE 11, Edge - if ( subWindow.addEventListener ) { - subWindow.addEventListener( "unload", unloadHandler, false ); - - // Support: IE 9 - 10 only - } else if ( subWindow.attachEvent ) { - subWindow.attachEvent( "onunload", unloadHandler ); - } - } - - /* Attributes - ---------------------------------------------------------------------- */ - - // Support: IE<8 - // Verify that getAttribute really returns attributes and not properties - // (excepting IE8 booleans) - support.attributes = assert(function( el ) { - el.className = "i"; - return !el.getAttribute("className"); - }); - - /* getElement(s)By* - ---------------------------------------------------------------------- */ - - // Check if getElementsByTagName("*") returns only elements - support.getElementsByTagName = assert(function( el ) { - el.appendChild( document.createComment("") ); - return !el.getElementsByTagName("*").length; - }); - - // Support: IE<9 - support.getElementsByClassName = rnative.test( document.getElementsByClassName ); - - // Support: IE<10 - // Check if getElementById returns elements by name - // The broken getElementById methods don't pick up programmatically-set names, - // so use a roundabout getElementsByName test - support.getById = assert(function( el ) { - docElem.appendChild( el ).id = expando; - return !document.getElementsByName || !document.getElementsByName( expando ).length; - }); - - // ID filter and find - if ( support.getById ) { - Expr.filter["ID"] = function( id ) { - var attrId = id.replace( runescape, funescape ); - return function( elem ) { - return elem.getAttribute("id") === attrId; - }; - }; - Expr.find["ID"] = function( id, context ) { - if ( typeof context.getElementById !== "undefined" && documentIsHTML ) { - var elem = context.getElementById( id ); - return elem ? [ elem ] : []; - } - }; - } else { - Expr.filter["ID"] = function( id ) { - var attrId = id.replace( runescape, funescape ); - return function( elem ) { - var node = typeof elem.getAttributeNode !== "undefined" && - elem.getAttributeNode("id"); - return node && node.value === attrId; - }; - }; - - // Support: IE 6 - 7 only - // getElementById is not reliable as a find shortcut - Expr.find["ID"] = function( id, context ) { - if ( typeof context.getElementById !== "undefined" && documentIsHTML ) { - var node, i, elems, - elem = context.getElementById( id ); - - if ( elem ) { - - // Verify the id attribute - node = elem.getAttributeNode("id"); - if ( node && node.value === id ) { - return [ elem ]; - } - - // Fall back on getElementsByName - elems = context.getElementsByName( id ); - i = 0; - while ( (elem = elems[i++]) ) { - node = elem.getAttributeNode("id"); - if ( node && node.value === id ) { - return [ elem ]; - } - } - } - - return []; - } - }; - } - - // Tag - Expr.find["TAG"] = support.getElementsByTagName ? - function( tag, context ) { - if ( typeof context.getElementsByTagName !== "undefined" ) { - return context.getElementsByTagName( tag ); - - // DocumentFragment nodes don't have gEBTN - } else if ( support.qsa ) { - return context.querySelectorAll( tag ); - } - } : - - function( tag, context ) { - var elem, - tmp = [], - i = 0, - // By happy coincidence, a (broken) gEBTN appears on DocumentFragment nodes too - results = context.getElementsByTagName( tag ); - - // Filter out possible comments - if ( tag === "*" ) { - while ( (elem = results[i++]) ) { - if ( elem.nodeType === 1 ) { - tmp.push( elem ); - } - } - - return tmp; - } - return results; - }; - - // Class - Expr.find["CLASS"] = support.getElementsByClassName && function( className, context ) { - if ( typeof context.getElementsByClassName !== "undefined" && documentIsHTML ) { - return context.getElementsByClassName( className ); - } - }; - - /* QSA/matchesSelector - ---------------------------------------------------------------------- */ - - // QSA and matchesSelector support - - // matchesSelector(:active) reports false when true (IE9/Opera 11.5) - rbuggyMatches = []; - - // qSa(:focus) reports false when true (Chrome 21) - // We allow this because of a bug in IE8/9 that throws an error - // whenever `document.activeElement` is accessed on an iframe - // So, we allow :focus to pass through QSA all the time to avoid the IE error - // See https://bugs.jquery.com/ticket/13378 - rbuggyQSA = []; - - if ( (support.qsa = rnative.test( document.querySelectorAll )) ) { - // Build QSA regex - // Regex strategy adopted from Diego Perini - assert(function( el ) { - // Select is set to empty string on purpose - // This is to test IE's treatment of not explicitly - // setting a boolean content attribute, - // since its presence should be enough - // https://bugs.jquery.com/ticket/12359 - docElem.appendChild( el ).innerHTML = "" + - ""; - - // Support: IE8, Opera 11-12.16 - // Nothing should be selected when empty strings follow ^= or $= or *= - // The test attribute must be unknown in Opera but "safe" for WinRT - // https://msdn.microsoft.com/en-us/library/ie/hh465388.aspx#attribute_section - if ( el.querySelectorAll("[msallowcapture^='']").length ) { - rbuggyQSA.push( "[*^$]=" + whitespace + "*(?:''|\"\")" ); - } - - // Support: IE8 - // Boolean attributes and "value" are not treated correctly - if ( !el.querySelectorAll("[selected]").length ) { - rbuggyQSA.push( "\\[" + whitespace + "*(?:value|" + booleans + ")" ); - } - - // Support: Chrome<29, Android<4.4, Safari<7.0+, iOS<7.0+, PhantomJS<1.9.8+ - if ( !el.querySelectorAll( "[id~=" + expando + "-]" ).length ) { - rbuggyQSA.push("~="); - } - - // Webkit/Opera - :checked should return selected option elements - // http://www.w3.org/TR/2011/REC-css3-selectors-20110929/#checked - // IE8 throws error here and will not see later tests - if ( !el.querySelectorAll(":checked").length ) { - rbuggyQSA.push(":checked"); - } - - // Support: Safari 8+, iOS 8+ - // https://bugs.webkit.org/show_bug.cgi?id=136851 - // In-page `selector#id sibling-combinator selector` fails - if ( !el.querySelectorAll( "a#" + expando + "+*" ).length ) { - rbuggyQSA.push(".#.+[+~]"); - } - }); - - assert(function( el ) { - el.innerHTML = "" + - ""; - - // Support: Windows 8 Native Apps - // The type and name attributes are restricted during .innerHTML assignment - var input = document.createElement("input"); - input.setAttribute( "type", "hidden" ); - el.appendChild( input ).setAttribute( "name", "D" ); - - // Support: IE8 - // Enforce case-sensitivity of name attribute - if ( el.querySelectorAll("[name=d]").length ) { - rbuggyQSA.push( "name" + whitespace + "*[*^$|!~]?=" ); - } - - // FF 3.5 - :enabled/:disabled and hidden elements (hidden elements are still enabled) - // IE8 throws error here and will not see later tests - if ( el.querySelectorAll(":enabled").length !== 2 ) { - rbuggyQSA.push( ":enabled", ":disabled" ); - } - - // Support: IE9-11+ - // IE's :disabled selector does not pick up the children of disabled fieldsets - docElem.appendChild( el ).disabled = true; - if ( el.querySelectorAll(":disabled").length !== 2 ) { - rbuggyQSA.push( ":enabled", ":disabled" ); - } - - // Opera 10-11 does not throw on post-comma invalid pseudos - el.querySelectorAll("*,:x"); - rbuggyQSA.push(",.*:"); - }); - } - - if ( (support.matchesSelector = rnative.test( (matches = docElem.matches || - docElem.webkitMatchesSelector || - docElem.mozMatchesSelector || - docElem.oMatchesSelector || - docElem.msMatchesSelector) )) ) { - - assert(function( el ) { - // Check to see if it's possible to do matchesSelector - // on a disconnected node (IE 9) - support.disconnectedMatch = matches.call( el, "*" ); - - // This should fail with an exception - // Gecko does not error, returns false instead - matches.call( el, "[s!='']:x" ); - rbuggyMatches.push( "!=", pseudos ); - }); - } - - rbuggyQSA = rbuggyQSA.length && new RegExp( rbuggyQSA.join("|") ); - rbuggyMatches = rbuggyMatches.length && new RegExp( rbuggyMatches.join("|") ); - - /* Contains - ---------------------------------------------------------------------- */ - hasCompare = rnative.test( docElem.compareDocumentPosition ); - - // Element contains another - // Purposefully self-exclusive - // As in, an element does not contain itself - contains = hasCompare || rnative.test( docElem.contains ) ? - function( a, b ) { - var adown = a.nodeType === 9 ? a.documentElement : a, - bup = b && b.parentNode; - return a === bup || !!( bup && bup.nodeType === 1 && ( - adown.contains ? - adown.contains( bup ) : - a.compareDocumentPosition && a.compareDocumentPosition( bup ) & 16 - )); - } : - function( a, b ) { - if ( b ) { - while ( (b = b.parentNode) ) { - if ( b === a ) { - return true; - } - } - } - return false; - }; - - /* Sorting - ---------------------------------------------------------------------- */ - - // Document order sorting - sortOrder = hasCompare ? - function( a, b ) { - - // Flag for duplicate removal - if ( a === b ) { - hasDuplicate = true; - return 0; - } - - // Sort on method existence if only one input has compareDocumentPosition - var compare = !a.compareDocumentPosition - !b.compareDocumentPosition; - if ( compare ) { - return compare; - } - - // Calculate position if both inputs belong to the same document - compare = ( a.ownerDocument || a ) === ( b.ownerDocument || b ) ? - a.compareDocumentPosition( b ) : - - // Otherwise we know they are disconnected - 1; - - // Disconnected nodes - if ( compare & 1 || - (!support.sortDetached && b.compareDocumentPosition( a ) === compare) ) { - - // Choose the first element that is related to our preferred document - if ( a === document || a.ownerDocument === preferredDoc && contains(preferredDoc, a) ) { - return -1; - } - if ( b === document || b.ownerDocument === preferredDoc && contains(preferredDoc, b) ) { - return 1; - } - - // Maintain original order - return sortInput ? - ( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) : - 0; - } - - return compare & 4 ? -1 : 1; - } : - function( a, b ) { - // Exit early if the nodes are identical - if ( a === b ) { - hasDuplicate = true; - return 0; - } - - var cur, - i = 0, - aup = a.parentNode, - bup = b.parentNode, - ap = [ a ], - bp = [ b ]; - - // Parentless nodes are either documents or disconnected - if ( !aup || !bup ) { - return a === document ? -1 : - b === document ? 1 : - aup ? -1 : - bup ? 1 : - sortInput ? - ( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) : - 0; - - // If the nodes are siblings, we can do a quick check - } else if ( aup === bup ) { - return siblingCheck( a, b ); - } - - // Otherwise we need full lists of their ancestors for comparison - cur = a; - while ( (cur = cur.parentNode) ) { - ap.unshift( cur ); - } - cur = b; - while ( (cur = cur.parentNode) ) { - bp.unshift( cur ); - } - - // Walk down the tree looking for a discrepancy - while ( ap[i] === bp[i] ) { - i++; - } - - return i ? - // Do a sibling check if the nodes have a common ancestor - siblingCheck( ap[i], bp[i] ) : - - // Otherwise nodes in our document sort first - ap[i] === preferredDoc ? -1 : - bp[i] === preferredDoc ? 1 : - 0; - }; - - return document; -}; - -Sizzle.matches = function( expr, elements ) { - return Sizzle( expr, null, null, elements ); -}; - -Sizzle.matchesSelector = function( elem, expr ) { - // Set document vars if needed - if ( ( elem.ownerDocument || elem ) !== document ) { - setDocument( elem ); - } - - if ( support.matchesSelector && documentIsHTML && - !nonnativeSelectorCache[ expr + " " ] && - ( !rbuggyMatches || !rbuggyMatches.test( expr ) ) && - ( !rbuggyQSA || !rbuggyQSA.test( expr ) ) ) { - - try { - var ret = matches.call( elem, expr ); - - // IE 9's matchesSelector returns false on disconnected nodes - if ( ret || support.disconnectedMatch || - // As well, disconnected nodes are said to be in a document - // fragment in IE 9 - elem.document && elem.document.nodeType !== 11 ) { - return ret; - } - } catch (e) { - nonnativeSelectorCache( expr, true ); - } - } - - return Sizzle( expr, document, null, [ elem ] ).length > 0; -}; - -Sizzle.contains = function( context, elem ) { - // Set document vars if needed - if ( ( context.ownerDocument || context ) !== document ) { - setDocument( context ); - } - return contains( context, elem ); -}; - -Sizzle.attr = function( elem, name ) { - // Set document vars if needed - if ( ( elem.ownerDocument || elem ) !== document ) { - setDocument( elem ); - } - - var fn = Expr.attrHandle[ name.toLowerCase() ], - // Don't get fooled by Object.prototype properties (jQuery #13807) - val = fn && hasOwn.call( Expr.attrHandle, name.toLowerCase() ) ? - fn( elem, name, !documentIsHTML ) : - undefined; - - return val !== undefined ? - val : - support.attributes || !documentIsHTML ? - elem.getAttribute( name ) : - (val = elem.getAttributeNode(name)) && val.specified ? - val.value : - null; -}; - -Sizzle.escape = function( sel ) { - return (sel + "").replace( rcssescape, fcssescape ); -}; - -Sizzle.error = function( msg ) { - throw new Error( "Syntax error, unrecognized expression: " + msg ); -}; - -/** - * Document sorting and removing duplicates - * @param {ArrayLike} results - */ -Sizzle.uniqueSort = function( results ) { - var elem, - duplicates = [], - j = 0, - i = 0; - - // Unless we *know* we can detect duplicates, assume their presence - hasDuplicate = !support.detectDuplicates; - sortInput = !support.sortStable && results.slice( 0 ); - results.sort( sortOrder ); - - if ( hasDuplicate ) { - while ( (elem = results[i++]) ) { - if ( elem === results[ i ] ) { - j = duplicates.push( i ); - } - } - while ( j-- ) { - results.splice( duplicates[ j ], 1 ); - } - } - - // Clear input after sorting to release objects - // See https://github.com/jquery/sizzle/pull/225 - sortInput = null; - - return results; -}; - -/** - * Utility function for retrieving the text value of an array of DOM nodes - * @param {Array|Element} elem - */ -getText = Sizzle.getText = function( elem ) { - var node, - ret = "", - i = 0, - nodeType = elem.nodeType; - - if ( !nodeType ) { - // If no nodeType, this is expected to be an array - while ( (node = elem[i++]) ) { - // Do not traverse comment nodes - ret += getText( node ); - } - } else if ( nodeType === 1 || nodeType === 9 || nodeType === 11 ) { - // Use textContent for elements - // innerText usage removed for consistency of new lines (jQuery #11153) - if ( typeof elem.textContent === "string" ) { - return elem.textContent; - } else { - // Traverse its children - for ( elem = elem.firstChild; elem; elem = elem.nextSibling ) { - ret += getText( elem ); - } - } - } else if ( nodeType === 3 || nodeType === 4 ) { - return elem.nodeValue; - } - // Do not include comment or processing instruction nodes - - return ret; -}; - -Expr = Sizzle.selectors = { - - // Can be adjusted by the user - cacheLength: 50, - - createPseudo: markFunction, - - match: matchExpr, - - attrHandle: {}, - - find: {}, - - relative: { - ">": { dir: "parentNode", first: true }, - " ": { dir: "parentNode" }, - "+": { dir: "previousSibling", first: true }, - "~": { dir: "previousSibling" } - }, - - preFilter: { - "ATTR": function( match ) { - match[1] = match[1].replace( runescape, funescape ); - - // Move the given value to match[3] whether quoted or unquoted - match[3] = ( match[3] || match[4] || match[5] || "" ).replace( runescape, funescape ); - - if ( match[2] === "~=" ) { - match[3] = " " + match[3] + " "; - } - - return match.slice( 0, 4 ); - }, - - "CHILD": function( match ) { - /* matches from matchExpr["CHILD"] - 1 type (only|nth|...) - 2 what (child|of-type) - 3 argument (even|odd|\d*|\d*n([+-]\d+)?|...) - 4 xn-component of xn+y argument ([+-]?\d*n|) - 5 sign of xn-component - 6 x of xn-component - 7 sign of y-component - 8 y of y-component - */ - match[1] = match[1].toLowerCase(); - - if ( match[1].slice( 0, 3 ) === "nth" ) { - // nth-* requires argument - if ( !match[3] ) { - Sizzle.error( match[0] ); - } - - // numeric x and y parameters for Expr.filter.CHILD - // remember that false/true cast respectively to 0/1 - match[4] = +( match[4] ? match[5] + (match[6] || 1) : 2 * ( match[3] === "even" || match[3] === "odd" ) ); - match[5] = +( ( match[7] + match[8] ) || match[3] === "odd" ); - - // other types prohibit arguments - } else if ( match[3] ) { - Sizzle.error( match[0] ); - } - - return match; - }, - - "PSEUDO": function( match ) { - var excess, - unquoted = !match[6] && match[2]; - - if ( matchExpr["CHILD"].test( match[0] ) ) { - return null; - } - - // Accept quoted arguments as-is - if ( match[3] ) { - match[2] = match[4] || match[5] || ""; - - // Strip excess characters from unquoted arguments - } else if ( unquoted && rpseudo.test( unquoted ) && - // Get excess from tokenize (recursively) - (excess = tokenize( unquoted, true )) && - // advance to the next closing parenthesis - (excess = unquoted.indexOf( ")", unquoted.length - excess ) - unquoted.length) ) { - - // excess is a negative index - match[0] = match[0].slice( 0, excess ); - match[2] = unquoted.slice( 0, excess ); - } - - // Return only captures needed by the pseudo filter method (type and argument) - return match.slice( 0, 3 ); - } - }, - - filter: { - - "TAG": function( nodeNameSelector ) { - var nodeName = nodeNameSelector.replace( runescape, funescape ).toLowerCase(); - return nodeNameSelector === "*" ? - function() { return true; } : - function( elem ) { - return elem.nodeName && elem.nodeName.toLowerCase() === nodeName; - }; - }, - - "CLASS": function( className ) { - var pattern = classCache[ className + " " ]; - - return pattern || - (pattern = new RegExp( "(^|" + whitespace + ")" + className + "(" + whitespace + "|$)" )) && - classCache( className, function( elem ) { - return pattern.test( typeof elem.className === "string" && elem.className || typeof elem.getAttribute !== "undefined" && elem.getAttribute("class") || "" ); - }); - }, - - "ATTR": function( name, operator, check ) { - return function( elem ) { - var result = Sizzle.attr( elem, name ); - - if ( result == null ) { - return operator === "!="; - } - if ( !operator ) { - return true; - } - - result += ""; - - return operator === "=" ? result === check : - operator === "!=" ? result !== check : - operator === "^=" ? check && result.indexOf( check ) === 0 : - operator === "*=" ? check && result.indexOf( check ) > -1 : - operator === "$=" ? check && result.slice( -check.length ) === check : - operator === "~=" ? ( " " + result.replace( rwhitespace, " " ) + " " ).indexOf( check ) > -1 : - operator === "|=" ? result === check || result.slice( 0, check.length + 1 ) === check + "-" : - false; - }; - }, - - "CHILD": function( type, what, argument, first, last ) { - var simple = type.slice( 0, 3 ) !== "nth", - forward = type.slice( -4 ) !== "last", - ofType = what === "of-type"; - - return first === 1 && last === 0 ? - - // Shortcut for :nth-*(n) - function( elem ) { - return !!elem.parentNode; - } : - - function( elem, context, xml ) { - var cache, uniqueCache, outerCache, node, nodeIndex, start, - dir = simple !== forward ? "nextSibling" : "previousSibling", - parent = elem.parentNode, - name = ofType && elem.nodeName.toLowerCase(), - useCache = !xml && !ofType, - diff = false; - - if ( parent ) { - - // :(first|last|only)-(child|of-type) - if ( simple ) { - while ( dir ) { - node = elem; - while ( (node = node[ dir ]) ) { - if ( ofType ? - node.nodeName.toLowerCase() === name : - node.nodeType === 1 ) { - - return false; - } - } - // Reverse direction for :only-* (if we haven't yet done so) - start = dir = type === "only" && !start && "nextSibling"; - } - return true; - } - - start = [ forward ? parent.firstChild : parent.lastChild ]; - - // non-xml :nth-child(...) stores cache data on `parent` - if ( forward && useCache ) { - - // Seek `elem` from a previously-cached index - - // ...in a gzip-friendly way - node = parent; - outerCache = node[ expando ] || (node[ expando ] = {}); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ node.uniqueID ] || - (outerCache[ node.uniqueID ] = {}); - - cache = uniqueCache[ type ] || []; - nodeIndex = cache[ 0 ] === dirruns && cache[ 1 ]; - diff = nodeIndex && cache[ 2 ]; - node = nodeIndex && parent.childNodes[ nodeIndex ]; - - while ( (node = ++nodeIndex && node && node[ dir ] || - - // Fallback to seeking `elem` from the start - (diff = nodeIndex = 0) || start.pop()) ) { - - // When found, cache indexes on `parent` and break - if ( node.nodeType === 1 && ++diff && node === elem ) { - uniqueCache[ type ] = [ dirruns, nodeIndex, diff ]; - break; - } - } - - } else { - // Use previously-cached element index if available - if ( useCache ) { - // ...in a gzip-friendly way - node = elem; - outerCache = node[ expando ] || (node[ expando ] = {}); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ node.uniqueID ] || - (outerCache[ node.uniqueID ] = {}); - - cache = uniqueCache[ type ] || []; - nodeIndex = cache[ 0 ] === dirruns && cache[ 1 ]; - diff = nodeIndex; - } - - // xml :nth-child(...) - // or :nth-last-child(...) or :nth(-last)?-of-type(...) - if ( diff === false ) { - // Use the same loop as above to seek `elem` from the start - while ( (node = ++nodeIndex && node && node[ dir ] || - (diff = nodeIndex = 0) || start.pop()) ) { - - if ( ( ofType ? - node.nodeName.toLowerCase() === name : - node.nodeType === 1 ) && - ++diff ) { - - // Cache the index of each encountered element - if ( useCache ) { - outerCache = node[ expando ] || (node[ expando ] = {}); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ node.uniqueID ] || - (outerCache[ node.uniqueID ] = {}); - - uniqueCache[ type ] = [ dirruns, diff ]; - } - - if ( node === elem ) { - break; - } - } - } - } - } - - // Incorporate the offset, then check against cycle size - diff -= last; - return diff === first || ( diff % first === 0 && diff / first >= 0 ); - } - }; - }, - - "PSEUDO": function( pseudo, argument ) { - // pseudo-class names are case-insensitive - // http://www.w3.org/TR/selectors/#pseudo-classes - // Prioritize by case sensitivity in case custom pseudos are added with uppercase letters - // Remember that setFilters inherits from pseudos - var args, - fn = Expr.pseudos[ pseudo ] || Expr.setFilters[ pseudo.toLowerCase() ] || - Sizzle.error( "unsupported pseudo: " + pseudo ); - - // The user may use createPseudo to indicate that - // arguments are needed to create the filter function - // just as Sizzle does - if ( fn[ expando ] ) { - return fn( argument ); - } - - // But maintain support for old signatures - if ( fn.length > 1 ) { - args = [ pseudo, pseudo, "", argument ]; - return Expr.setFilters.hasOwnProperty( pseudo.toLowerCase() ) ? - markFunction(function( seed, matches ) { - var idx, - matched = fn( seed, argument ), - i = matched.length; - while ( i-- ) { - idx = indexOf( seed, matched[i] ); - seed[ idx ] = !( matches[ idx ] = matched[i] ); - } - }) : - function( elem ) { - return fn( elem, 0, args ); - }; - } - - return fn; - } - }, - - pseudos: { - // Potentially complex pseudos - "not": markFunction(function( selector ) { - // Trim the selector passed to compile - // to avoid treating leading and trailing - // spaces as combinators - var input = [], - results = [], - matcher = compile( selector.replace( rtrim, "$1" ) ); - - return matcher[ expando ] ? - markFunction(function( seed, matches, context, xml ) { - var elem, - unmatched = matcher( seed, null, xml, [] ), - i = seed.length; - - // Match elements unmatched by `matcher` - while ( i-- ) { - if ( (elem = unmatched[i]) ) { - seed[i] = !(matches[i] = elem); - } - } - }) : - function( elem, context, xml ) { - input[0] = elem; - matcher( input, null, xml, results ); - // Don't keep the element (issue #299) - input[0] = null; - return !results.pop(); - }; - }), - - "has": markFunction(function( selector ) { - return function( elem ) { - return Sizzle( selector, elem ).length > 0; - }; - }), - - "contains": markFunction(function( text ) { - text = text.replace( runescape, funescape ); - return function( elem ) { - return ( elem.textContent || getText( elem ) ).indexOf( text ) > -1; - }; - }), - - // "Whether an element is represented by a :lang() selector - // is based solely on the element's language value - // being equal to the identifier C, - // or beginning with the identifier C immediately followed by "-". - // The matching of C against the element's language value is performed case-insensitively. - // The identifier C does not have to be a valid language name." - // http://www.w3.org/TR/selectors/#lang-pseudo - "lang": markFunction( function( lang ) { - // lang value must be a valid identifier - if ( !ridentifier.test(lang || "") ) { - Sizzle.error( "unsupported lang: " + lang ); - } - lang = lang.replace( runescape, funescape ).toLowerCase(); - return function( elem ) { - var elemLang; - do { - if ( (elemLang = documentIsHTML ? - elem.lang : - elem.getAttribute("xml:lang") || elem.getAttribute("lang")) ) { - - elemLang = elemLang.toLowerCase(); - return elemLang === lang || elemLang.indexOf( lang + "-" ) === 0; - } - } while ( (elem = elem.parentNode) && elem.nodeType === 1 ); - return false; - }; - }), - - // Miscellaneous - "target": function( elem ) { - var hash = window.location && window.location.hash; - return hash && hash.slice( 1 ) === elem.id; - }, - - "root": function( elem ) { - return elem === docElem; - }, - - "focus": function( elem ) { - return elem === document.activeElement && (!document.hasFocus || document.hasFocus()) && !!(elem.type || elem.href || ~elem.tabIndex); - }, - - // Boolean properties - "enabled": createDisabledPseudo( false ), - "disabled": createDisabledPseudo( true ), - - "checked": function( elem ) { - // In CSS3, :checked should return both checked and selected elements - // http://www.w3.org/TR/2011/REC-css3-selectors-20110929/#checked - var nodeName = elem.nodeName.toLowerCase(); - return (nodeName === "input" && !!elem.checked) || (nodeName === "option" && !!elem.selected); - }, - - "selected": function( elem ) { - // Accessing this property makes selected-by-default - // options in Safari work properly - if ( elem.parentNode ) { - elem.parentNode.selectedIndex; - } - - return elem.selected === true; - }, - - // Contents - "empty": function( elem ) { - // http://www.w3.org/TR/selectors/#empty-pseudo - // :empty is negated by element (1) or content nodes (text: 3; cdata: 4; entity ref: 5), - // but not by others (comment: 8; processing instruction: 7; etc.) - // nodeType < 6 works because attributes (2) do not appear as children - for ( elem = elem.firstChild; elem; elem = elem.nextSibling ) { - if ( elem.nodeType < 6 ) { - return false; - } - } - return true; - }, - - "parent": function( elem ) { - return !Expr.pseudos["empty"]( elem ); - }, - - // Element/input types - "header": function( elem ) { - return rheader.test( elem.nodeName ); - }, - - "input": function( elem ) { - return rinputs.test( elem.nodeName ); - }, - - "button": function( elem ) { - var name = elem.nodeName.toLowerCase(); - return name === "input" && elem.type === "button" || name === "button"; - }, - - "text": function( elem ) { - var attr; - return elem.nodeName.toLowerCase() === "input" && - elem.type === "text" && - - // Support: IE<8 - // New HTML5 attribute values (e.g., "search") appear with elem.type === "text" - ( (attr = elem.getAttribute("type")) == null || attr.toLowerCase() === "text" ); - }, - - // Position-in-collection - "first": createPositionalPseudo(function() { - return [ 0 ]; - }), - - "last": createPositionalPseudo(function( matchIndexes, length ) { - return [ length - 1 ]; - }), - - "eq": createPositionalPseudo(function( matchIndexes, length, argument ) { - return [ argument < 0 ? argument + length : argument ]; - }), - - "even": createPositionalPseudo(function( matchIndexes, length ) { - var i = 0; - for ( ; i < length; i += 2 ) { - matchIndexes.push( i ); - } - return matchIndexes; - }), - - "odd": createPositionalPseudo(function( matchIndexes, length ) { - var i = 1; - for ( ; i < length; i += 2 ) { - matchIndexes.push( i ); - } - return matchIndexes; - }), - - "lt": createPositionalPseudo(function( matchIndexes, length, argument ) { - var i = argument < 0 ? - argument + length : - argument > length ? - length : - argument; - for ( ; --i >= 0; ) { - matchIndexes.push( i ); - } - return matchIndexes; - }), - - "gt": createPositionalPseudo(function( matchIndexes, length, argument ) { - var i = argument < 0 ? argument + length : argument; - for ( ; ++i < length; ) { - matchIndexes.push( i ); - } - return matchIndexes; - }) - } -}; - -Expr.pseudos["nth"] = Expr.pseudos["eq"]; - -// Add button/input type pseudos -for ( i in { radio: true, checkbox: true, file: true, password: true, image: true } ) { - Expr.pseudos[ i ] = createInputPseudo( i ); -} -for ( i in { submit: true, reset: true } ) { - Expr.pseudos[ i ] = createButtonPseudo( i ); -} - -// Easy API for creating new setFilters -function setFilters() {} -setFilters.prototype = Expr.filters = Expr.pseudos; -Expr.setFilters = new setFilters(); - -tokenize = Sizzle.tokenize = function( selector, parseOnly ) { - var matched, match, tokens, type, - soFar, groups, preFilters, - cached = tokenCache[ selector + " " ]; - - if ( cached ) { - return parseOnly ? 0 : cached.slice( 0 ); - } - - soFar = selector; - groups = []; - preFilters = Expr.preFilter; - - while ( soFar ) { - - // Comma and first run - if ( !matched || (match = rcomma.exec( soFar )) ) { - if ( match ) { - // Don't consume trailing commas as valid - soFar = soFar.slice( match[0].length ) || soFar; - } - groups.push( (tokens = []) ); - } - - matched = false; - - // Combinators - if ( (match = rcombinators.exec( soFar )) ) { - matched = match.shift(); - tokens.push({ - value: matched, - // Cast descendant combinators to space - type: match[0].replace( rtrim, " " ) - }); - soFar = soFar.slice( matched.length ); - } - - // Filters - for ( type in Expr.filter ) { - if ( (match = matchExpr[ type ].exec( soFar )) && (!preFilters[ type ] || - (match = preFilters[ type ]( match ))) ) { - matched = match.shift(); - tokens.push({ - value: matched, - type: type, - matches: match - }); - soFar = soFar.slice( matched.length ); - } - } - - if ( !matched ) { - break; - } - } - - // Return the length of the invalid excess - // if we're just parsing - // Otherwise, throw an error or return tokens - return parseOnly ? - soFar.length : - soFar ? - Sizzle.error( selector ) : - // Cache the tokens - tokenCache( selector, groups ).slice( 0 ); -}; - -function toSelector( tokens ) { - var i = 0, - len = tokens.length, - selector = ""; - for ( ; i < len; i++ ) { - selector += tokens[i].value; - } - return selector; -} - -function addCombinator( matcher, combinator, base ) { - var dir = combinator.dir, - skip = combinator.next, - key = skip || dir, - checkNonElements = base && key === "parentNode", - doneName = done++; - - return combinator.first ? - // Check against closest ancestor/preceding element - function( elem, context, xml ) { - while ( (elem = elem[ dir ]) ) { - if ( elem.nodeType === 1 || checkNonElements ) { - return matcher( elem, context, xml ); - } - } - return false; - } : - - // Check against all ancestor/preceding elements - function( elem, context, xml ) { - var oldCache, uniqueCache, outerCache, - newCache = [ dirruns, doneName ]; - - // We can't set arbitrary data on XML nodes, so they don't benefit from combinator caching - if ( xml ) { - while ( (elem = elem[ dir ]) ) { - if ( elem.nodeType === 1 || checkNonElements ) { - if ( matcher( elem, context, xml ) ) { - return true; - } - } - } - } else { - while ( (elem = elem[ dir ]) ) { - if ( elem.nodeType === 1 || checkNonElements ) { - outerCache = elem[ expando ] || (elem[ expando ] = {}); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ elem.uniqueID ] || (outerCache[ elem.uniqueID ] = {}); - - if ( skip && skip === elem.nodeName.toLowerCase() ) { - elem = elem[ dir ] || elem; - } else if ( (oldCache = uniqueCache[ key ]) && - oldCache[ 0 ] === dirruns && oldCache[ 1 ] === doneName ) { - - // Assign to newCache so results back-propagate to previous elements - return (newCache[ 2 ] = oldCache[ 2 ]); - } else { - // Reuse newcache so results back-propagate to previous elements - uniqueCache[ key ] = newCache; - - // A match means we're done; a fail means we have to keep checking - if ( (newCache[ 2 ] = matcher( elem, context, xml )) ) { - return true; - } - } - } - } - } - return false; - }; -} - -function elementMatcher( matchers ) { - return matchers.length > 1 ? - function( elem, context, xml ) { - var i = matchers.length; - while ( i-- ) { - if ( !matchers[i]( elem, context, xml ) ) { - return false; - } - } - return true; - } : - matchers[0]; -} - -function multipleContexts( selector, contexts, results ) { - var i = 0, - len = contexts.length; - for ( ; i < len; i++ ) { - Sizzle( selector, contexts[i], results ); - } - return results; -} - -function condense( unmatched, map, filter, context, xml ) { - var elem, - newUnmatched = [], - i = 0, - len = unmatched.length, - mapped = map != null; - - for ( ; i < len; i++ ) { - if ( (elem = unmatched[i]) ) { - if ( !filter || filter( elem, context, xml ) ) { - newUnmatched.push( elem ); - if ( mapped ) { - map.push( i ); - } - } - } - } - - return newUnmatched; -} - -function setMatcher( preFilter, selector, matcher, postFilter, postFinder, postSelector ) { - if ( postFilter && !postFilter[ expando ] ) { - postFilter = setMatcher( postFilter ); - } - if ( postFinder && !postFinder[ expando ] ) { - postFinder = setMatcher( postFinder, postSelector ); - } - return markFunction(function( seed, results, context, xml ) { - var temp, i, elem, - preMap = [], - postMap = [], - preexisting = results.length, - - // Get initial elements from seed or context - elems = seed || multipleContexts( selector || "*", context.nodeType ? [ context ] : context, [] ), - - // Prefilter to get matcher input, preserving a map for seed-results synchronization - matcherIn = preFilter && ( seed || !selector ) ? - condense( elems, preMap, preFilter, context, xml ) : - elems, - - matcherOut = matcher ? - // If we have a postFinder, or filtered seed, or non-seed postFilter or preexisting results, - postFinder || ( seed ? preFilter : preexisting || postFilter ) ? - - // ...intermediate processing is necessary - [] : - - // ...otherwise use results directly - results : - matcherIn; - - // Find primary matches - if ( matcher ) { - matcher( matcherIn, matcherOut, context, xml ); - } - - // Apply postFilter - if ( postFilter ) { - temp = condense( matcherOut, postMap ); - postFilter( temp, [], context, xml ); - - // Un-match failing elements by moving them back to matcherIn - i = temp.length; - while ( i-- ) { - if ( (elem = temp[i]) ) { - matcherOut[ postMap[i] ] = !(matcherIn[ postMap[i] ] = elem); - } - } - } - - if ( seed ) { - if ( postFinder || preFilter ) { - if ( postFinder ) { - // Get the final matcherOut by condensing this intermediate into postFinder contexts - temp = []; - i = matcherOut.length; - while ( i-- ) { - if ( (elem = matcherOut[i]) ) { - // Restore matcherIn since elem is not yet a final match - temp.push( (matcherIn[i] = elem) ); - } - } - postFinder( null, (matcherOut = []), temp, xml ); - } - - // Move matched elements from seed to results to keep them synchronized - i = matcherOut.length; - while ( i-- ) { - if ( (elem = matcherOut[i]) && - (temp = postFinder ? indexOf( seed, elem ) : preMap[i]) > -1 ) { - - seed[temp] = !(results[temp] = elem); - } - } - } - - // Add elements to results, through postFinder if defined - } else { - matcherOut = condense( - matcherOut === results ? - matcherOut.splice( preexisting, matcherOut.length ) : - matcherOut - ); - if ( postFinder ) { - postFinder( null, results, matcherOut, xml ); - } else { - push.apply( results, matcherOut ); - } - } - }); -} - -function matcherFromTokens( tokens ) { - var checkContext, matcher, j, - len = tokens.length, - leadingRelative = Expr.relative[ tokens[0].type ], - implicitRelative = leadingRelative || Expr.relative[" "], - i = leadingRelative ? 1 : 0, - - // The foundational matcher ensures that elements are reachable from top-level context(s) - matchContext = addCombinator( function( elem ) { - return elem === checkContext; - }, implicitRelative, true ), - matchAnyContext = addCombinator( function( elem ) { - return indexOf( checkContext, elem ) > -1; - }, implicitRelative, true ), - matchers = [ function( elem, context, xml ) { - var ret = ( !leadingRelative && ( xml || context !== outermostContext ) ) || ( - (checkContext = context).nodeType ? - matchContext( elem, context, xml ) : - matchAnyContext( elem, context, xml ) ); - // Avoid hanging onto element (issue #299) - checkContext = null; - return ret; - } ]; - - for ( ; i < len; i++ ) { - if ( (matcher = Expr.relative[ tokens[i].type ]) ) { - matchers = [ addCombinator(elementMatcher( matchers ), matcher) ]; - } else { - matcher = Expr.filter[ tokens[i].type ].apply( null, tokens[i].matches ); - - // Return special upon seeing a positional matcher - if ( matcher[ expando ] ) { - // Find the next relative operator (if any) for proper handling - j = ++i; - for ( ; j < len; j++ ) { - if ( Expr.relative[ tokens[j].type ] ) { - break; - } - } - return setMatcher( - i > 1 && elementMatcher( matchers ), - i > 1 && toSelector( - // If the preceding token was a descendant combinator, insert an implicit any-element `*` - tokens.slice( 0, i - 1 ).concat({ value: tokens[ i - 2 ].type === " " ? "*" : "" }) - ).replace( rtrim, "$1" ), - matcher, - i < j && matcherFromTokens( tokens.slice( i, j ) ), - j < len && matcherFromTokens( (tokens = tokens.slice( j )) ), - j < len && toSelector( tokens ) - ); - } - matchers.push( matcher ); - } - } - - return elementMatcher( matchers ); -} - -function matcherFromGroupMatchers( elementMatchers, setMatchers ) { - var bySet = setMatchers.length > 0, - byElement = elementMatchers.length > 0, - superMatcher = function( seed, context, xml, results, outermost ) { - var elem, j, matcher, - matchedCount = 0, - i = "0", - unmatched = seed && [], - setMatched = [], - contextBackup = outermostContext, - // We must always have either seed elements or outermost context - elems = seed || byElement && Expr.find["TAG"]( "*", outermost ), - // Use integer dirruns iff this is the outermost matcher - dirrunsUnique = (dirruns += contextBackup == null ? 1 : Math.random() || 0.1), - len = elems.length; - - if ( outermost ) { - outermostContext = context === document || context || outermost; - } - - // Add elements passing elementMatchers directly to results - // Support: IE<9, Safari - // Tolerate NodeList properties (IE: "length"; Safari: ) matching elements by id - for ( ; i !== len && (elem = elems[i]) != null; i++ ) { - if ( byElement && elem ) { - j = 0; - if ( !context && elem.ownerDocument !== document ) { - setDocument( elem ); - xml = !documentIsHTML; - } - while ( (matcher = elementMatchers[j++]) ) { - if ( matcher( elem, context || document, xml) ) { - results.push( elem ); - break; - } - } - if ( outermost ) { - dirruns = dirrunsUnique; - } - } - - // Track unmatched elements for set filters - if ( bySet ) { - // They will have gone through all possible matchers - if ( (elem = !matcher && elem) ) { - matchedCount--; - } - - // Lengthen the array for every element, matched or not - if ( seed ) { - unmatched.push( elem ); - } - } - } - - // `i` is now the count of elements visited above, and adding it to `matchedCount` - // makes the latter nonnegative. - matchedCount += i; - - // Apply set filters to unmatched elements - // NOTE: This can be skipped if there are no unmatched elements (i.e., `matchedCount` - // equals `i`), unless we didn't visit _any_ elements in the above loop because we have - // no element matchers and no seed. - // Incrementing an initially-string "0" `i` allows `i` to remain a string only in that - // case, which will result in a "00" `matchedCount` that differs from `i` but is also - // numerically zero. - if ( bySet && i !== matchedCount ) { - j = 0; - while ( (matcher = setMatchers[j++]) ) { - matcher( unmatched, setMatched, context, xml ); - } - - if ( seed ) { - // Reintegrate element matches to eliminate the need for sorting - if ( matchedCount > 0 ) { - while ( i-- ) { - if ( !(unmatched[i] || setMatched[i]) ) { - setMatched[i] = pop.call( results ); - } - } - } - - // Discard index placeholder values to get only actual matches - setMatched = condense( setMatched ); - } - - // Add matches to results - push.apply( results, setMatched ); - - // Seedless set matches succeeding multiple successful matchers stipulate sorting - if ( outermost && !seed && setMatched.length > 0 && - ( matchedCount + setMatchers.length ) > 1 ) { - - Sizzle.uniqueSort( results ); - } - } - - // Override manipulation of globals by nested matchers - if ( outermost ) { - dirruns = dirrunsUnique; - outermostContext = contextBackup; - } - - return unmatched; - }; - - return bySet ? - markFunction( superMatcher ) : - superMatcher; -} - -compile = Sizzle.compile = function( selector, match /* Internal Use Only */ ) { - var i, - setMatchers = [], - elementMatchers = [], - cached = compilerCache[ selector + " " ]; - - if ( !cached ) { - // Generate a function of recursive functions that can be used to check each element - if ( !match ) { - match = tokenize( selector ); - } - i = match.length; - while ( i-- ) { - cached = matcherFromTokens( match[i] ); - if ( cached[ expando ] ) { - setMatchers.push( cached ); - } else { - elementMatchers.push( cached ); - } - } - - // Cache the compiled function - cached = compilerCache( selector, matcherFromGroupMatchers( elementMatchers, setMatchers ) ); - - // Save selector and tokenization - cached.selector = selector; - } - return cached; -}; - -/** - * A low-level selection function that works with Sizzle's compiled - * selector functions - * @param {String|Function} selector A selector or a pre-compiled - * selector function built with Sizzle.compile - * @param {Element} context - * @param {Array} [results] - * @param {Array} [seed] A set of elements to match against - */ -select = Sizzle.select = function( selector, context, results, seed ) { - var i, tokens, token, type, find, - compiled = typeof selector === "function" && selector, - match = !seed && tokenize( (selector = compiled.selector || selector) ); - - results = results || []; - - // Try to minimize operations if there is only one selector in the list and no seed - // (the latter of which guarantees us context) - if ( match.length === 1 ) { - - // Reduce context if the leading compound selector is an ID - tokens = match[0] = match[0].slice( 0 ); - if ( tokens.length > 2 && (token = tokens[0]).type === "ID" && - context.nodeType === 9 && documentIsHTML && Expr.relative[ tokens[1].type ] ) { - - context = ( Expr.find["ID"]( token.matches[0].replace(runescape, funescape), context ) || [] )[0]; - if ( !context ) { - return results; - - // Precompiled matchers will still verify ancestry, so step up a level - } else if ( compiled ) { - context = context.parentNode; - } - - selector = selector.slice( tokens.shift().value.length ); - } - - // Fetch a seed set for right-to-left matching - i = matchExpr["needsContext"].test( selector ) ? 0 : tokens.length; - while ( i-- ) { - token = tokens[i]; - - // Abort if we hit a combinator - if ( Expr.relative[ (type = token.type) ] ) { - break; - } - if ( (find = Expr.find[ type ]) ) { - // Search, expanding context for leading sibling combinators - if ( (seed = find( - token.matches[0].replace( runescape, funescape ), - rsibling.test( tokens[0].type ) && testContext( context.parentNode ) || context - )) ) { - - // If seed is empty or no tokens remain, we can return early - tokens.splice( i, 1 ); - selector = seed.length && toSelector( tokens ); - if ( !selector ) { - push.apply( results, seed ); - return results; - } - - break; - } - } - } - } - - // Compile and execute a filtering function if one is not provided - // Provide `match` to avoid retokenization if we modified the selector above - ( compiled || compile( selector, match ) )( - seed, - context, - !documentIsHTML, - results, - !context || rsibling.test( selector ) && testContext( context.parentNode ) || context - ); - return results; -}; - -// One-time assignments - -// Sort stability -support.sortStable = expando.split("").sort( sortOrder ).join("") === expando; - -// Support: Chrome 14-35+ -// Always assume duplicates if they aren't passed to the comparison function -support.detectDuplicates = !!hasDuplicate; - -// Initialize against the default document -setDocument(); - -// Support: Webkit<537.32 - Safari 6.0.3/Chrome 25 (fixed in Chrome 27) -// Detached nodes confoundingly follow *each other* -support.sortDetached = assert(function( el ) { - // Should return 1, but returns 4 (following) - return el.compareDocumentPosition( document.createElement("fieldset") ) & 1; -}); - -// Support: IE<8 -// Prevent attribute/property "interpolation" -// https://msdn.microsoft.com/en-us/library/ms536429%28VS.85%29.aspx -if ( !assert(function( el ) { - el.innerHTML = ""; - return el.firstChild.getAttribute("href") === "#" ; -}) ) { - addHandle( "type|href|height|width", function( elem, name, isXML ) { - if ( !isXML ) { - return elem.getAttribute( name, name.toLowerCase() === "type" ? 1 : 2 ); - } - }); -} - -// Support: IE<9 -// Use defaultValue in place of getAttribute("value") -if ( !support.attributes || !assert(function( el ) { - el.innerHTML = ""; - el.firstChild.setAttribute( "value", "" ); - return el.firstChild.getAttribute( "value" ) === ""; -}) ) { - addHandle( "value", function( elem, name, isXML ) { - if ( !isXML && elem.nodeName.toLowerCase() === "input" ) { - return elem.defaultValue; - } - }); -} - -// Support: IE<9 -// Use getAttributeNode to fetch booleans when getAttribute lies -if ( !assert(function( el ) { - return el.getAttribute("disabled") == null; -}) ) { - addHandle( booleans, function( elem, name, isXML ) { - var val; - if ( !isXML ) { - return elem[ name ] === true ? name.toLowerCase() : - (val = elem.getAttributeNode( name )) && val.specified ? - val.value : - null; - } - }); -} - -return Sizzle; - -})( window ); - - - -jQuery.find = Sizzle; -jQuery.expr = Sizzle.selectors; - -// Deprecated -jQuery.expr[ ":" ] = jQuery.expr.pseudos; -jQuery.uniqueSort = jQuery.unique = Sizzle.uniqueSort; -jQuery.text = Sizzle.getText; -jQuery.isXMLDoc = Sizzle.isXML; -jQuery.contains = Sizzle.contains; -jQuery.escapeSelector = Sizzle.escape; - - - - -var dir = function( elem, dir, until ) { - var matched = [], - truncate = until !== undefined; - - while ( ( elem = elem[ dir ] ) && elem.nodeType !== 9 ) { - if ( elem.nodeType === 1 ) { - if ( truncate && jQuery( elem ).is( until ) ) { - break; - } - matched.push( elem ); - } - } - return matched; -}; - - -var siblings = function( n, elem ) { - var matched = []; - - for ( ; n; n = n.nextSibling ) { - if ( n.nodeType === 1 && n !== elem ) { - matched.push( n ); - } - } - - return matched; -}; - - -var rneedsContext = jQuery.expr.match.needsContext; - - - -function nodeName( elem, name ) { - - return elem.nodeName && elem.nodeName.toLowerCase() === name.toLowerCase(); - -}; -var rsingleTag = ( /^<([a-z][^\/\0>:\x20\t\r\n\f]*)[\x20\t\r\n\f]*\/?>(?:<\/\1>|)$/i ); - - - -// Implement the identical functionality for filter and not -function winnow( elements, qualifier, not ) { - if ( isFunction( qualifier ) ) { - return jQuery.grep( elements, function( elem, i ) { - return !!qualifier.call( elem, i, elem ) !== not; - } ); - } - - // Single element - if ( qualifier.nodeType ) { - return jQuery.grep( elements, function( elem ) { - return ( elem === qualifier ) !== not; - } ); - } - - // Arraylike of elements (jQuery, arguments, Array) - if ( typeof qualifier !== "string" ) { - return jQuery.grep( elements, function( elem ) { - return ( indexOf.call( qualifier, elem ) > -1 ) !== not; - } ); - } - - // Filtered directly for both simple and complex selectors - return jQuery.filter( qualifier, elements, not ); -} - -jQuery.filter = function( expr, elems, not ) { - var elem = elems[ 0 ]; - - if ( not ) { - expr = ":not(" + expr + ")"; - } - - if ( elems.length === 1 && elem.nodeType === 1 ) { - return jQuery.find.matchesSelector( elem, expr ) ? [ elem ] : []; - } - - return jQuery.find.matches( expr, jQuery.grep( elems, function( elem ) { - return elem.nodeType === 1; - } ) ); -}; - -jQuery.fn.extend( { - find: function( selector ) { - var i, ret, - len = this.length, - self = this; - - if ( typeof selector !== "string" ) { - return this.pushStack( jQuery( selector ).filter( function() { - for ( i = 0; i < len; i++ ) { - if ( jQuery.contains( self[ i ], this ) ) { - return true; - } - } - } ) ); - } - - ret = this.pushStack( [] ); - - for ( i = 0; i < len; i++ ) { - jQuery.find( selector, self[ i ], ret ); - } - - return len > 1 ? jQuery.uniqueSort( ret ) : ret; - }, - filter: function( selector ) { - return this.pushStack( winnow( this, selector || [], false ) ); - }, - not: function( selector ) { - return this.pushStack( winnow( this, selector || [], true ) ); - }, - is: function( selector ) { - return !!winnow( - this, - - // If this is a positional/relative selector, check membership in the returned set - // so $("p:first").is("p:last") won't return true for a doc with two "p". - typeof selector === "string" && rneedsContext.test( selector ) ? - jQuery( selector ) : - selector || [], - false - ).length; - } -} ); - - -// Initialize a jQuery object - - -// A central reference to the root jQuery(document) -var rootjQuery, - - // A simple way to check for HTML strings - // Prioritize #id over to avoid XSS via location.hash (#9521) - // Strict HTML recognition (#11290: must start with <) - // Shortcut simple #id case for speed - rquickExpr = /^(?:\s*(<[\w\W]+>)[^>]*|#([\w-]+))$/, - - init = jQuery.fn.init = function( selector, context, root ) { - var match, elem; - - // HANDLE: $(""), $(null), $(undefined), $(false) - if ( !selector ) { - return this; - } - - // Method init() accepts an alternate rootjQuery - // so migrate can support jQuery.sub (gh-2101) - root = root || rootjQuery; - - // Handle HTML strings - if ( typeof selector === "string" ) { - if ( selector[ 0 ] === "<" && - selector[ selector.length - 1 ] === ">" && - selector.length >= 3 ) { - - // Assume that strings that start and end with <> are HTML and skip the regex check - match = [ null, selector, null ]; - - } else { - match = rquickExpr.exec( selector ); - } - - // Match html or make sure no context is specified for #id - if ( match && ( match[ 1 ] || !context ) ) { - - // HANDLE: $(html) -> $(array) - if ( match[ 1 ] ) { - context = context instanceof jQuery ? context[ 0 ] : context; - - // Option to run scripts is true for back-compat - // Intentionally let the error be thrown if parseHTML is not present - jQuery.merge( this, jQuery.parseHTML( - match[ 1 ], - context && context.nodeType ? context.ownerDocument || context : document, - true - ) ); - - // HANDLE: $(html, props) - if ( rsingleTag.test( match[ 1 ] ) && jQuery.isPlainObject( context ) ) { - for ( match in context ) { - - // Properties of context are called as methods if possible - if ( isFunction( this[ match ] ) ) { - this[ match ]( context[ match ] ); - - // ...and otherwise set as attributes - } else { - this.attr( match, context[ match ] ); - } - } - } - - return this; - - // HANDLE: $(#id) - } else { - elem = document.getElementById( match[ 2 ] ); - - if ( elem ) { - - // Inject the element directly into the jQuery object - this[ 0 ] = elem; - this.length = 1; - } - return this; - } - - // HANDLE: $(expr, $(...)) - } else if ( !context || context.jquery ) { - return ( context || root ).find( selector ); - - // HANDLE: $(expr, context) - // (which is just equivalent to: $(context).find(expr) - } else { - return this.constructor( context ).find( selector ); - } - - // HANDLE: $(DOMElement) - } else if ( selector.nodeType ) { - this[ 0 ] = selector; - this.length = 1; - return this; - - // HANDLE: $(function) - // Shortcut for document ready - } else if ( isFunction( selector ) ) { - return root.ready !== undefined ? - root.ready( selector ) : - - // Execute immediately if ready is not present - selector( jQuery ); - } - - return jQuery.makeArray( selector, this ); - }; - -// Give the init function the jQuery prototype for later instantiation -init.prototype = jQuery.fn; - -// Initialize central reference -rootjQuery = jQuery( document ); - - -var rparentsprev = /^(?:parents|prev(?:Until|All))/, - - // Methods guaranteed to produce a unique set when starting from a unique set - guaranteedUnique = { - children: true, - contents: true, - next: true, - prev: true - }; - -jQuery.fn.extend( { - has: function( target ) { - var targets = jQuery( target, this ), - l = targets.length; - - return this.filter( function() { - var i = 0; - for ( ; i < l; i++ ) { - if ( jQuery.contains( this, targets[ i ] ) ) { - return true; - } - } - } ); - }, - - closest: function( selectors, context ) { - var cur, - i = 0, - l = this.length, - matched = [], - targets = typeof selectors !== "string" && jQuery( selectors ); - - // Positional selectors never match, since there's no _selection_ context - if ( !rneedsContext.test( selectors ) ) { - for ( ; i < l; i++ ) { - for ( cur = this[ i ]; cur && cur !== context; cur = cur.parentNode ) { - - // Always skip document fragments - if ( cur.nodeType < 11 && ( targets ? - targets.index( cur ) > -1 : - - // Don't pass non-elements to Sizzle - cur.nodeType === 1 && - jQuery.find.matchesSelector( cur, selectors ) ) ) { - - matched.push( cur ); - break; - } - } - } - } - - return this.pushStack( matched.length > 1 ? jQuery.uniqueSort( matched ) : matched ); - }, - - // Determine the position of an element within the set - index: function( elem ) { - - // No argument, return index in parent - if ( !elem ) { - return ( this[ 0 ] && this[ 0 ].parentNode ) ? this.first().prevAll().length : -1; - } - - // Index in selector - if ( typeof elem === "string" ) { - return indexOf.call( jQuery( elem ), this[ 0 ] ); - } - - // Locate the position of the desired element - return indexOf.call( this, - - // If it receives a jQuery object, the first element is used - elem.jquery ? elem[ 0 ] : elem - ); - }, - - add: function( selector, context ) { - return this.pushStack( - jQuery.uniqueSort( - jQuery.merge( this.get(), jQuery( selector, context ) ) - ) - ); - }, - - addBack: function( selector ) { - return this.add( selector == null ? - this.prevObject : this.prevObject.filter( selector ) - ); - } -} ); - -function sibling( cur, dir ) { - while ( ( cur = cur[ dir ] ) && cur.nodeType !== 1 ) {} - return cur; -} - -jQuery.each( { - parent: function( elem ) { - var parent = elem.parentNode; - return parent && parent.nodeType !== 11 ? parent : null; - }, - parents: function( elem ) { - return dir( elem, "parentNode" ); - }, - parentsUntil: function( elem, i, until ) { - return dir( elem, "parentNode", until ); - }, - next: function( elem ) { - return sibling( elem, "nextSibling" ); - }, - prev: function( elem ) { - return sibling( elem, "previousSibling" ); - }, - nextAll: function( elem ) { - return dir( elem, "nextSibling" ); - }, - prevAll: function( elem ) { - return dir( elem, "previousSibling" ); - }, - nextUntil: function( elem, i, until ) { - return dir( elem, "nextSibling", until ); - }, - prevUntil: function( elem, i, until ) { - return dir( elem, "previousSibling", until ); - }, - siblings: function( elem ) { - return siblings( ( elem.parentNode || {} ).firstChild, elem ); - }, - children: function( elem ) { - return siblings( elem.firstChild ); - }, - contents: function( elem ) { - if ( typeof elem.contentDocument !== "undefined" ) { - return elem.contentDocument; - } - - // Support: IE 9 - 11 only, iOS 7 only, Android Browser <=4.3 only - // Treat the template element as a regular one in browsers that - // don't support it. - if ( nodeName( elem, "template" ) ) { - elem = elem.content || elem; - } - - return jQuery.merge( [], elem.childNodes ); - } -}, function( name, fn ) { - jQuery.fn[ name ] = function( until, selector ) { - var matched = jQuery.map( this, fn, until ); - - if ( name.slice( -5 ) !== "Until" ) { - selector = until; - } - - if ( selector && typeof selector === "string" ) { - matched = jQuery.filter( selector, matched ); - } - - if ( this.length > 1 ) { - - // Remove duplicates - if ( !guaranteedUnique[ name ] ) { - jQuery.uniqueSort( matched ); - } - - // Reverse order for parents* and prev-derivatives - if ( rparentsprev.test( name ) ) { - matched.reverse(); - } - } - - return this.pushStack( matched ); - }; -} ); -var rnothtmlwhite = ( /[^\x20\t\r\n\f]+/g ); - - - -// Convert String-formatted options into Object-formatted ones -function createOptions( options ) { - var object = {}; - jQuery.each( options.match( rnothtmlwhite ) || [], function( _, flag ) { - object[ flag ] = true; - } ); - return object; -} - -/* - * Create a callback list using the following parameters: - * - * options: an optional list of space-separated options that will change how - * the callback list behaves or a more traditional option object - * - * By default a callback list will act like an event callback list and can be - * "fired" multiple times. - * - * Possible options: - * - * once: will ensure the callback list can only be fired once (like a Deferred) - * - * memory: will keep track of previous values and will call any callback added - * after the list has been fired right away with the latest "memorized" - * values (like a Deferred) - * - * unique: will ensure a callback can only be added once (no duplicate in the list) - * - * stopOnFalse: interrupt callings when a callback returns false - * - */ -jQuery.Callbacks = function( options ) { - - // Convert options from String-formatted to Object-formatted if needed - // (we check in cache first) - options = typeof options === "string" ? - createOptions( options ) : - jQuery.extend( {}, options ); - - var // Flag to know if list is currently firing - firing, - - // Last fire value for non-forgettable lists - memory, - - // Flag to know if list was already fired - fired, - - // Flag to prevent firing - locked, - - // Actual callback list - list = [], - - // Queue of execution data for repeatable lists - queue = [], - - // Index of currently firing callback (modified by add/remove as needed) - firingIndex = -1, - - // Fire callbacks - fire = function() { - - // Enforce single-firing - locked = locked || options.once; - - // Execute callbacks for all pending executions, - // respecting firingIndex overrides and runtime changes - fired = firing = true; - for ( ; queue.length; firingIndex = -1 ) { - memory = queue.shift(); - while ( ++firingIndex < list.length ) { - - // Run callback and check for early termination - if ( list[ firingIndex ].apply( memory[ 0 ], memory[ 1 ] ) === false && - options.stopOnFalse ) { - - // Jump to end and forget the data so .add doesn't re-fire - firingIndex = list.length; - memory = false; - } - } - } - - // Forget the data if we're done with it - if ( !options.memory ) { - memory = false; - } - - firing = false; - - // Clean up if we're done firing for good - if ( locked ) { - - // Keep an empty list if we have data for future add calls - if ( memory ) { - list = []; - - // Otherwise, this object is spent - } else { - list = ""; - } - } - }, - - // Actual Callbacks object - self = { - - // Add a callback or a collection of callbacks to the list - add: function() { - if ( list ) { - - // If we have memory from a past run, we should fire after adding - if ( memory && !firing ) { - firingIndex = list.length - 1; - queue.push( memory ); - } - - ( function add( args ) { - jQuery.each( args, function( _, arg ) { - if ( isFunction( arg ) ) { - if ( !options.unique || !self.has( arg ) ) { - list.push( arg ); - } - } else if ( arg && arg.length && toType( arg ) !== "string" ) { - - // Inspect recursively - add( arg ); - } - } ); - } )( arguments ); - - if ( memory && !firing ) { - fire(); - } - } - return this; - }, - - // Remove a callback from the list - remove: function() { - jQuery.each( arguments, function( _, arg ) { - var index; - while ( ( index = jQuery.inArray( arg, list, index ) ) > -1 ) { - list.splice( index, 1 ); - - // Handle firing indexes - if ( index <= firingIndex ) { - firingIndex--; - } - } - } ); - return this; - }, - - // Check if a given callback is in the list. - // If no argument is given, return whether or not list has callbacks attached. - has: function( fn ) { - return fn ? - jQuery.inArray( fn, list ) > -1 : - list.length > 0; - }, - - // Remove all callbacks from the list - empty: function() { - if ( list ) { - list = []; - } - return this; - }, - - // Disable .fire and .add - // Abort any current/pending executions - // Clear all callbacks and values - disable: function() { - locked = queue = []; - list = memory = ""; - return this; - }, - disabled: function() { - return !list; - }, - - // Disable .fire - // Also disable .add unless we have memory (since it would have no effect) - // Abort any pending executions - lock: function() { - locked = queue = []; - if ( !memory && !firing ) { - list = memory = ""; - } - return this; - }, - locked: function() { - return !!locked; - }, - - // Call all callbacks with the given context and arguments - fireWith: function( context, args ) { - if ( !locked ) { - args = args || []; - args = [ context, args.slice ? args.slice() : args ]; - queue.push( args ); - if ( !firing ) { - fire(); - } - } - return this; - }, - - // Call all the callbacks with the given arguments - fire: function() { - self.fireWith( this, arguments ); - return this; - }, - - // To know if the callbacks have already been called at least once - fired: function() { - return !!fired; - } - }; - - return self; -}; - - -function Identity( v ) { - return v; -} -function Thrower( ex ) { - throw ex; -} - -function adoptValue( value, resolve, reject, noValue ) { - var method; - - try { - - // Check for promise aspect first to privilege synchronous behavior - if ( value && isFunction( ( method = value.promise ) ) ) { - method.call( value ).done( resolve ).fail( reject ); - - // Other thenables - } else if ( value && isFunction( ( method = value.then ) ) ) { - method.call( value, resolve, reject ); - - // Other non-thenables - } else { - - // Control `resolve` arguments by letting Array#slice cast boolean `noValue` to integer: - // * false: [ value ].slice( 0 ) => resolve( value ) - // * true: [ value ].slice( 1 ) => resolve() - resolve.apply( undefined, [ value ].slice( noValue ) ); - } - - // For Promises/A+, convert exceptions into rejections - // Since jQuery.when doesn't unwrap thenables, we can skip the extra checks appearing in - // Deferred#then to conditionally suppress rejection. - } catch ( value ) { - - // Support: Android 4.0 only - // Strict mode functions invoked without .call/.apply get global-object context - reject.apply( undefined, [ value ] ); - } -} - -jQuery.extend( { - - Deferred: function( func ) { - var tuples = [ - - // action, add listener, callbacks, - // ... .then handlers, argument index, [final state] - [ "notify", "progress", jQuery.Callbacks( "memory" ), - jQuery.Callbacks( "memory" ), 2 ], - [ "resolve", "done", jQuery.Callbacks( "once memory" ), - jQuery.Callbacks( "once memory" ), 0, "resolved" ], - [ "reject", "fail", jQuery.Callbacks( "once memory" ), - jQuery.Callbacks( "once memory" ), 1, "rejected" ] - ], - state = "pending", - promise = { - state: function() { - return state; - }, - always: function() { - deferred.done( arguments ).fail( arguments ); - return this; - }, - "catch": function( fn ) { - return promise.then( null, fn ); - }, - - // Keep pipe for back-compat - pipe: function( /* fnDone, fnFail, fnProgress */ ) { - var fns = arguments; - - return jQuery.Deferred( function( newDefer ) { - jQuery.each( tuples, function( i, tuple ) { - - // Map tuples (progress, done, fail) to arguments (done, fail, progress) - var fn = isFunction( fns[ tuple[ 4 ] ] ) && fns[ tuple[ 4 ] ]; - - // deferred.progress(function() { bind to newDefer or newDefer.notify }) - // deferred.done(function() { bind to newDefer or newDefer.resolve }) - // deferred.fail(function() { bind to newDefer or newDefer.reject }) - deferred[ tuple[ 1 ] ]( function() { - var returned = fn && fn.apply( this, arguments ); - if ( returned && isFunction( returned.promise ) ) { - returned.promise() - .progress( newDefer.notify ) - .done( newDefer.resolve ) - .fail( newDefer.reject ); - } else { - newDefer[ tuple[ 0 ] + "With" ]( - this, - fn ? [ returned ] : arguments - ); - } - } ); - } ); - fns = null; - } ).promise(); - }, - then: function( onFulfilled, onRejected, onProgress ) { - var maxDepth = 0; - function resolve( depth, deferred, handler, special ) { - return function() { - var that = this, - args = arguments, - mightThrow = function() { - var returned, then; - - // Support: Promises/A+ section 2.3.3.3.3 - // https://promisesaplus.com/#point-59 - // Ignore double-resolution attempts - if ( depth < maxDepth ) { - return; - } - - returned = handler.apply( that, args ); - - // Support: Promises/A+ section 2.3.1 - // https://promisesaplus.com/#point-48 - if ( returned === deferred.promise() ) { - throw new TypeError( "Thenable self-resolution" ); - } - - // Support: Promises/A+ sections 2.3.3.1, 3.5 - // https://promisesaplus.com/#point-54 - // https://promisesaplus.com/#point-75 - // Retrieve `then` only once - then = returned && - - // Support: Promises/A+ section 2.3.4 - // https://promisesaplus.com/#point-64 - // Only check objects and functions for thenability - ( typeof returned === "object" || - typeof returned === "function" ) && - returned.then; - - // Handle a returned thenable - if ( isFunction( then ) ) { - - // Special processors (notify) just wait for resolution - if ( special ) { - then.call( - returned, - resolve( maxDepth, deferred, Identity, special ), - resolve( maxDepth, deferred, Thrower, special ) - ); - - // Normal processors (resolve) also hook into progress - } else { - - // ...and disregard older resolution values - maxDepth++; - - then.call( - returned, - resolve( maxDepth, deferred, Identity, special ), - resolve( maxDepth, deferred, Thrower, special ), - resolve( maxDepth, deferred, Identity, - deferred.notifyWith ) - ); - } - - // Handle all other returned values - } else { - - // Only substitute handlers pass on context - // and multiple values (non-spec behavior) - if ( handler !== Identity ) { - that = undefined; - args = [ returned ]; - } - - // Process the value(s) - // Default process is resolve - ( special || deferred.resolveWith )( that, args ); - } - }, - - // Only normal processors (resolve) catch and reject exceptions - process = special ? - mightThrow : - function() { - try { - mightThrow(); - } catch ( e ) { - - if ( jQuery.Deferred.exceptionHook ) { - jQuery.Deferred.exceptionHook( e, - process.stackTrace ); - } - - // Support: Promises/A+ section 2.3.3.3.4.1 - // https://promisesaplus.com/#point-61 - // Ignore post-resolution exceptions - if ( depth + 1 >= maxDepth ) { - - // Only substitute handlers pass on context - // and multiple values (non-spec behavior) - if ( handler !== Thrower ) { - that = undefined; - args = [ e ]; - } - - deferred.rejectWith( that, args ); - } - } - }; - - // Support: Promises/A+ section 2.3.3.3.1 - // https://promisesaplus.com/#point-57 - // Re-resolve promises immediately to dodge false rejection from - // subsequent errors - if ( depth ) { - process(); - } else { - - // Call an optional hook to record the stack, in case of exception - // since it's otherwise lost when execution goes async - if ( jQuery.Deferred.getStackHook ) { - process.stackTrace = jQuery.Deferred.getStackHook(); - } - window.setTimeout( process ); - } - }; - } - - return jQuery.Deferred( function( newDefer ) { - - // progress_handlers.add( ... ) - tuples[ 0 ][ 3 ].add( - resolve( - 0, - newDefer, - isFunction( onProgress ) ? - onProgress : - Identity, - newDefer.notifyWith - ) - ); - - // fulfilled_handlers.add( ... ) - tuples[ 1 ][ 3 ].add( - resolve( - 0, - newDefer, - isFunction( onFulfilled ) ? - onFulfilled : - Identity - ) - ); - - // rejected_handlers.add( ... ) - tuples[ 2 ][ 3 ].add( - resolve( - 0, - newDefer, - isFunction( onRejected ) ? - onRejected : - Thrower - ) - ); - } ).promise(); - }, - - // Get a promise for this deferred - // If obj is provided, the promise aspect is added to the object - promise: function( obj ) { - return obj != null ? jQuery.extend( obj, promise ) : promise; - } - }, - deferred = {}; - - // Add list-specific methods - jQuery.each( tuples, function( i, tuple ) { - var list = tuple[ 2 ], - stateString = tuple[ 5 ]; - - // promise.progress = list.add - // promise.done = list.add - // promise.fail = list.add - promise[ tuple[ 1 ] ] = list.add; - - // Handle state - if ( stateString ) { - list.add( - function() { - - // state = "resolved" (i.e., fulfilled) - // state = "rejected" - state = stateString; - }, - - // rejected_callbacks.disable - // fulfilled_callbacks.disable - tuples[ 3 - i ][ 2 ].disable, - - // rejected_handlers.disable - // fulfilled_handlers.disable - tuples[ 3 - i ][ 3 ].disable, - - // progress_callbacks.lock - tuples[ 0 ][ 2 ].lock, - - // progress_handlers.lock - tuples[ 0 ][ 3 ].lock - ); - } - - // progress_handlers.fire - // fulfilled_handlers.fire - // rejected_handlers.fire - list.add( tuple[ 3 ].fire ); - - // deferred.notify = function() { deferred.notifyWith(...) } - // deferred.resolve = function() { deferred.resolveWith(...) } - // deferred.reject = function() { deferred.rejectWith(...) } - deferred[ tuple[ 0 ] ] = function() { - deferred[ tuple[ 0 ] + "With" ]( this === deferred ? undefined : this, arguments ); - return this; - }; - - // deferred.notifyWith = list.fireWith - // deferred.resolveWith = list.fireWith - // deferred.rejectWith = list.fireWith - deferred[ tuple[ 0 ] + "With" ] = list.fireWith; - } ); - - // Make the deferred a promise - promise.promise( deferred ); - - // Call given func if any - if ( func ) { - func.call( deferred, deferred ); - } - - // All done! - return deferred; - }, - - // Deferred helper - when: function( singleValue ) { - var - - // count of uncompleted subordinates - remaining = arguments.length, - - // count of unprocessed arguments - i = remaining, - - // subordinate fulfillment data - resolveContexts = Array( i ), - resolveValues = slice.call( arguments ), - - // the master Deferred - master = jQuery.Deferred(), - - // subordinate callback factory - updateFunc = function( i ) { - return function( value ) { - resolveContexts[ i ] = this; - resolveValues[ i ] = arguments.length > 1 ? slice.call( arguments ) : value; - if ( !( --remaining ) ) { - master.resolveWith( resolveContexts, resolveValues ); - } - }; - }; - - // Single- and empty arguments are adopted like Promise.resolve - if ( remaining <= 1 ) { - adoptValue( singleValue, master.done( updateFunc( i ) ).resolve, master.reject, - !remaining ); - - // Use .then() to unwrap secondary thenables (cf. gh-3000) - if ( master.state() === "pending" || - isFunction( resolveValues[ i ] && resolveValues[ i ].then ) ) { - - return master.then(); - } - } - - // Multiple arguments are aggregated like Promise.all array elements - while ( i-- ) { - adoptValue( resolveValues[ i ], updateFunc( i ), master.reject ); - } - - return master.promise(); - } -} ); - - -// These usually indicate a programmer mistake during development, -// warn about them ASAP rather than swallowing them by default. -var rerrorNames = /^(Eval|Internal|Range|Reference|Syntax|Type|URI)Error$/; - -jQuery.Deferred.exceptionHook = function( error, stack ) { - - // Support: IE 8 - 9 only - // Console exists when dev tools are open, which can happen at any time - if ( window.console && window.console.warn && error && rerrorNames.test( error.name ) ) { - window.console.warn( "jQuery.Deferred exception: " + error.message, error.stack, stack ); - } -}; - - - - -jQuery.readyException = function( error ) { - window.setTimeout( function() { - throw error; - } ); -}; - - - - -// The deferred used on DOM ready -var readyList = jQuery.Deferred(); - -jQuery.fn.ready = function( fn ) { - - readyList - .then( fn ) - - // Wrap jQuery.readyException in a function so that the lookup - // happens at the time of error handling instead of callback - // registration. - .catch( function( error ) { - jQuery.readyException( error ); - } ); - - return this; -}; - -jQuery.extend( { - - // Is the DOM ready to be used? Set to true once it occurs. - isReady: false, - - // A counter to track how many items to wait for before - // the ready event fires. See #6781 - readyWait: 1, - - // Handle when the DOM is ready - ready: function( wait ) { - - // Abort if there are pending holds or we're already ready - if ( wait === true ? --jQuery.readyWait : jQuery.isReady ) { - return; - } - - // Remember that the DOM is ready - jQuery.isReady = true; - - // If a normal DOM Ready event fired, decrement, and wait if need be - if ( wait !== true && --jQuery.readyWait > 0 ) { - return; - } - - // If there are functions bound, to execute - readyList.resolveWith( document, [ jQuery ] ); - } -} ); - -jQuery.ready.then = readyList.then; - -// The ready event handler and self cleanup method -function completed() { - document.removeEventListener( "DOMContentLoaded", completed ); - window.removeEventListener( "load", completed ); - jQuery.ready(); -} - -// Catch cases where $(document).ready() is called -// after the browser event has already occurred. -// Support: IE <=9 - 10 only -// Older IE sometimes signals "interactive" too soon -if ( document.readyState === "complete" || - ( document.readyState !== "loading" && !document.documentElement.doScroll ) ) { - - // Handle it asynchronously to allow scripts the opportunity to delay ready - window.setTimeout( jQuery.ready ); - -} else { - - // Use the handy event callback - document.addEventListener( "DOMContentLoaded", completed ); - - // A fallback to window.onload, that will always work - window.addEventListener( "load", completed ); -} - - - - -// Multifunctional method to get and set values of a collection -// The value/s can optionally be executed if it's a function -var access = function( elems, fn, key, value, chainable, emptyGet, raw ) { - var i = 0, - len = elems.length, - bulk = key == null; - - // Sets many values - if ( toType( key ) === "object" ) { - chainable = true; - for ( i in key ) { - access( elems, fn, i, key[ i ], true, emptyGet, raw ); - } - - // Sets one value - } else if ( value !== undefined ) { - chainable = true; - - if ( !isFunction( value ) ) { - raw = true; - } - - if ( bulk ) { - - // Bulk operations run against the entire set - if ( raw ) { - fn.call( elems, value ); - fn = null; - - // ...except when executing function values - } else { - bulk = fn; - fn = function( elem, key, value ) { - return bulk.call( jQuery( elem ), value ); - }; - } - } - - if ( fn ) { - for ( ; i < len; i++ ) { - fn( - elems[ i ], key, raw ? - value : - value.call( elems[ i ], i, fn( elems[ i ], key ) ) - ); - } - } - } - - if ( chainable ) { - return elems; - } - - // Gets - if ( bulk ) { - return fn.call( elems ); - } - - return len ? fn( elems[ 0 ], key ) : emptyGet; -}; - - -// Matches dashed string for camelizing -var rmsPrefix = /^-ms-/, - rdashAlpha = /-([a-z])/g; - -// Used by camelCase as callback to replace() -function fcamelCase( all, letter ) { - return letter.toUpperCase(); -} - -// Convert dashed to camelCase; used by the css and data modules -// Support: IE <=9 - 11, Edge 12 - 15 -// Microsoft forgot to hump their vendor prefix (#9572) -function camelCase( string ) { - return string.replace( rmsPrefix, "ms-" ).replace( rdashAlpha, fcamelCase ); -} -var acceptData = function( owner ) { - - // Accepts only: - // - Node - // - Node.ELEMENT_NODE - // - Node.DOCUMENT_NODE - // - Object - // - Any - return owner.nodeType === 1 || owner.nodeType === 9 || !( +owner.nodeType ); -}; - - - - -function Data() { - this.expando = jQuery.expando + Data.uid++; -} - -Data.uid = 1; - -Data.prototype = { - - cache: function( owner ) { - - // Check if the owner object already has a cache - var value = owner[ this.expando ]; - - // If not, create one - if ( !value ) { - value = {}; - - // We can accept data for non-element nodes in modern browsers, - // but we should not, see #8335. - // Always return an empty object. - if ( acceptData( owner ) ) { - - // If it is a node unlikely to be stringify-ed or looped over - // use plain assignment - if ( owner.nodeType ) { - owner[ this.expando ] = value; - - // Otherwise secure it in a non-enumerable property - // configurable must be true to allow the property to be - // deleted when data is removed - } else { - Object.defineProperty( owner, this.expando, { - value: value, - configurable: true - } ); - } - } - } - - return value; - }, - set: function( owner, data, value ) { - var prop, - cache = this.cache( owner ); - - // Handle: [ owner, key, value ] args - // Always use camelCase key (gh-2257) - if ( typeof data === "string" ) { - cache[ camelCase( data ) ] = value; - - // Handle: [ owner, { properties } ] args - } else { - - // Copy the properties one-by-one to the cache object - for ( prop in data ) { - cache[ camelCase( prop ) ] = data[ prop ]; - } - } - return cache; - }, - get: function( owner, key ) { - return key === undefined ? - this.cache( owner ) : - - // Always use camelCase key (gh-2257) - owner[ this.expando ] && owner[ this.expando ][ camelCase( key ) ]; - }, - access: function( owner, key, value ) { - - // In cases where either: - // - // 1. No key was specified - // 2. A string key was specified, but no value provided - // - // Take the "read" path and allow the get method to determine - // which value to return, respectively either: - // - // 1. The entire cache object - // 2. The data stored at the key - // - if ( key === undefined || - ( ( key && typeof key === "string" ) && value === undefined ) ) { - - return this.get( owner, key ); - } - - // When the key is not a string, or both a key and value - // are specified, set or extend (existing objects) with either: - // - // 1. An object of properties - // 2. A key and value - // - this.set( owner, key, value ); - - // Since the "set" path can have two possible entry points - // return the expected data based on which path was taken[*] - return value !== undefined ? value : key; - }, - remove: function( owner, key ) { - var i, - cache = owner[ this.expando ]; - - if ( cache === undefined ) { - return; - } - - if ( key !== undefined ) { - - // Support array or space separated string of keys - if ( Array.isArray( key ) ) { - - // If key is an array of keys... - // We always set camelCase keys, so remove that. - key = key.map( camelCase ); - } else { - key = camelCase( key ); - - // If a key with the spaces exists, use it. - // Otherwise, create an array by matching non-whitespace - key = key in cache ? - [ key ] : - ( key.match( rnothtmlwhite ) || [] ); - } - - i = key.length; - - while ( i-- ) { - delete cache[ key[ i ] ]; - } - } - - // Remove the expando if there's no more data - if ( key === undefined || jQuery.isEmptyObject( cache ) ) { - - // Support: Chrome <=35 - 45 - // Webkit & Blink performance suffers when deleting properties - // from DOM nodes, so set to undefined instead - // https://bugs.chromium.org/p/chromium/issues/detail?id=378607 (bug restricted) - if ( owner.nodeType ) { - owner[ this.expando ] = undefined; - } else { - delete owner[ this.expando ]; - } - } - }, - hasData: function( owner ) { - var cache = owner[ this.expando ]; - return cache !== undefined && !jQuery.isEmptyObject( cache ); - } -}; -var dataPriv = new Data(); - -var dataUser = new Data(); - - - -// Implementation Summary -// -// 1. Enforce API surface and semantic compatibility with 1.9.x branch -// 2. Improve the module's maintainability by reducing the storage -// paths to a single mechanism. -// 3. Use the same single mechanism to support "private" and "user" data. -// 4. _Never_ expose "private" data to user code (TODO: Drop _data, _removeData) -// 5. Avoid exposing implementation details on user objects (eg. expando properties) -// 6. Provide a clear path for implementation upgrade to WeakMap in 2014 - -var rbrace = /^(?:\{[\w\W]*\}|\[[\w\W]*\])$/, - rmultiDash = /[A-Z]/g; - -function getData( data ) { - if ( data === "true" ) { - return true; - } - - if ( data === "false" ) { - return false; - } - - if ( data === "null" ) { - return null; - } - - // Only convert to a number if it doesn't change the string - if ( data === +data + "" ) { - return +data; - } - - if ( rbrace.test( data ) ) { - return JSON.parse( data ); - } - - return data; -} - -function dataAttr( elem, key, data ) { - var name; - - // If nothing was found internally, try to fetch any - // data from the HTML5 data-* attribute - if ( data === undefined && elem.nodeType === 1 ) { - name = "data-" + key.replace( rmultiDash, "-$&" ).toLowerCase(); - data = elem.getAttribute( name ); - - if ( typeof data === "string" ) { - try { - data = getData( data ); - } catch ( e ) {} - - // Make sure we set the data so it isn't changed later - dataUser.set( elem, key, data ); - } else { - data = undefined; - } - } - return data; -} - -jQuery.extend( { - hasData: function( elem ) { - return dataUser.hasData( elem ) || dataPriv.hasData( elem ); - }, - - data: function( elem, name, data ) { - return dataUser.access( elem, name, data ); - }, - - removeData: function( elem, name ) { - dataUser.remove( elem, name ); - }, - - // TODO: Now that all calls to _data and _removeData have been replaced - // with direct calls to dataPriv methods, these can be deprecated. - _data: function( elem, name, data ) { - return dataPriv.access( elem, name, data ); - }, - - _removeData: function( elem, name ) { - dataPriv.remove( elem, name ); - } -} ); - -jQuery.fn.extend( { - data: function( key, value ) { - var i, name, data, - elem = this[ 0 ], - attrs = elem && elem.attributes; - - // Gets all values - if ( key === undefined ) { - if ( this.length ) { - data = dataUser.get( elem ); - - if ( elem.nodeType === 1 && !dataPriv.get( elem, "hasDataAttrs" ) ) { - i = attrs.length; - while ( i-- ) { - - // Support: IE 11 only - // The attrs elements can be null (#14894) - if ( attrs[ i ] ) { - name = attrs[ i ].name; - if ( name.indexOf( "data-" ) === 0 ) { - name = camelCase( name.slice( 5 ) ); - dataAttr( elem, name, data[ name ] ); - } - } - } - dataPriv.set( elem, "hasDataAttrs", true ); - } - } - - return data; - } - - // Sets multiple values - if ( typeof key === "object" ) { - return this.each( function() { - dataUser.set( this, key ); - } ); - } - - return access( this, function( value ) { - var data; - - // The calling jQuery object (element matches) is not empty - // (and therefore has an element appears at this[ 0 ]) and the - // `value` parameter was not undefined. An empty jQuery object - // will result in `undefined` for elem = this[ 0 ] which will - // throw an exception if an attempt to read a data cache is made. - if ( elem && value === undefined ) { - - // Attempt to get data from the cache - // The key will always be camelCased in Data - data = dataUser.get( elem, key ); - if ( data !== undefined ) { - return data; - } - - // Attempt to "discover" the data in - // HTML5 custom data-* attrs - data = dataAttr( elem, key ); - if ( data !== undefined ) { - return data; - } - - // We tried really hard, but the data doesn't exist. - return; - } - - // Set the data... - this.each( function() { - - // We always store the camelCased key - dataUser.set( this, key, value ); - } ); - }, null, value, arguments.length > 1, null, true ); - }, - - removeData: function( key ) { - return this.each( function() { - dataUser.remove( this, key ); - } ); - } -} ); - - -jQuery.extend( { - queue: function( elem, type, data ) { - var queue; - - if ( elem ) { - type = ( type || "fx" ) + "queue"; - queue = dataPriv.get( elem, type ); - - // Speed up dequeue by getting out quickly if this is just a lookup - if ( data ) { - if ( !queue || Array.isArray( data ) ) { - queue = dataPriv.access( elem, type, jQuery.makeArray( data ) ); - } else { - queue.push( data ); - } - } - return queue || []; - } - }, - - dequeue: function( elem, type ) { - type = type || "fx"; - - var queue = jQuery.queue( elem, type ), - startLength = queue.length, - fn = queue.shift(), - hooks = jQuery._queueHooks( elem, type ), - next = function() { - jQuery.dequeue( elem, type ); - }; - - // If the fx queue is dequeued, always remove the progress sentinel - if ( fn === "inprogress" ) { - fn = queue.shift(); - startLength--; - } - - if ( fn ) { - - // Add a progress sentinel to prevent the fx queue from being - // automatically dequeued - if ( type === "fx" ) { - queue.unshift( "inprogress" ); - } - - // Clear up the last queue stop function - delete hooks.stop; - fn.call( elem, next, hooks ); - } - - if ( !startLength && hooks ) { - hooks.empty.fire(); - } - }, - - // Not public - generate a queueHooks object, or return the current one - _queueHooks: function( elem, type ) { - var key = type + "queueHooks"; - return dataPriv.get( elem, key ) || dataPriv.access( elem, key, { - empty: jQuery.Callbacks( "once memory" ).add( function() { - dataPriv.remove( elem, [ type + "queue", key ] ); - } ) - } ); - } -} ); - -jQuery.fn.extend( { - queue: function( type, data ) { - var setter = 2; - - if ( typeof type !== "string" ) { - data = type; - type = "fx"; - setter--; - } - - if ( arguments.length < setter ) { - return jQuery.queue( this[ 0 ], type ); - } - - return data === undefined ? - this : - this.each( function() { - var queue = jQuery.queue( this, type, data ); - - // Ensure a hooks for this queue - jQuery._queueHooks( this, type ); - - if ( type === "fx" && queue[ 0 ] !== "inprogress" ) { - jQuery.dequeue( this, type ); - } - } ); - }, - dequeue: function( type ) { - return this.each( function() { - jQuery.dequeue( this, type ); - } ); - }, - clearQueue: function( type ) { - return this.queue( type || "fx", [] ); - }, - - // Get a promise resolved when queues of a certain type - // are emptied (fx is the type by default) - promise: function( type, obj ) { - var tmp, - count = 1, - defer = jQuery.Deferred(), - elements = this, - i = this.length, - resolve = function() { - if ( !( --count ) ) { - defer.resolveWith( elements, [ elements ] ); - } - }; - - if ( typeof type !== "string" ) { - obj = type; - type = undefined; - } - type = type || "fx"; - - while ( i-- ) { - tmp = dataPriv.get( elements[ i ], type + "queueHooks" ); - if ( tmp && tmp.empty ) { - count++; - tmp.empty.add( resolve ); - } - } - resolve(); - return defer.promise( obj ); - } -} ); -var pnum = ( /[+-]?(?:\d*\.|)\d+(?:[eE][+-]?\d+|)/ ).source; - -var rcssNum = new RegExp( "^(?:([+-])=|)(" + pnum + ")([a-z%]*)$", "i" ); - - -var cssExpand = [ "Top", "Right", "Bottom", "Left" ]; - -var documentElement = document.documentElement; - - - - var isAttached = function( elem ) { - return jQuery.contains( elem.ownerDocument, elem ); - }, - composed = { composed: true }; - - // Support: IE 9 - 11+, Edge 12 - 18+, iOS 10.0 - 10.2 only - // Check attachment across shadow DOM boundaries when possible (gh-3504) - // Support: iOS 10.0-10.2 only - // Early iOS 10 versions support `attachShadow` but not `getRootNode`, - // leading to errors. We need to check for `getRootNode`. - if ( documentElement.getRootNode ) { - isAttached = function( elem ) { - return jQuery.contains( elem.ownerDocument, elem ) || - elem.getRootNode( composed ) === elem.ownerDocument; - }; - } -var isHiddenWithinTree = function( elem, el ) { - - // isHiddenWithinTree might be called from jQuery#filter function; - // in that case, element will be second argument - elem = el || elem; - - // Inline style trumps all - return elem.style.display === "none" || - elem.style.display === "" && - - // Otherwise, check computed style - // Support: Firefox <=43 - 45 - // Disconnected elements can have computed display: none, so first confirm that elem is - // in the document. - isAttached( elem ) && - - jQuery.css( elem, "display" ) === "none"; - }; - -var swap = function( elem, options, callback, args ) { - var ret, name, - old = {}; - - // Remember the old values, and insert the new ones - for ( name in options ) { - old[ name ] = elem.style[ name ]; - elem.style[ name ] = options[ name ]; - } - - ret = callback.apply( elem, args || [] ); - - // Revert the old values - for ( name in options ) { - elem.style[ name ] = old[ name ]; - } - - return ret; -}; - - - - -function adjustCSS( elem, prop, valueParts, tween ) { - var adjusted, scale, - maxIterations = 20, - currentValue = tween ? - function() { - return tween.cur(); - } : - function() { - return jQuery.css( elem, prop, "" ); - }, - initial = currentValue(), - unit = valueParts && valueParts[ 3 ] || ( jQuery.cssNumber[ prop ] ? "" : "px" ), - - // Starting value computation is required for potential unit mismatches - initialInUnit = elem.nodeType && - ( jQuery.cssNumber[ prop ] || unit !== "px" && +initial ) && - rcssNum.exec( jQuery.css( elem, prop ) ); - - if ( initialInUnit && initialInUnit[ 3 ] !== unit ) { - - // Support: Firefox <=54 - // Halve the iteration target value to prevent interference from CSS upper bounds (gh-2144) - initial = initial / 2; - - // Trust units reported by jQuery.css - unit = unit || initialInUnit[ 3 ]; - - // Iteratively approximate from a nonzero starting point - initialInUnit = +initial || 1; - - while ( maxIterations-- ) { - - // Evaluate and update our best guess (doubling guesses that zero out). - // Finish if the scale equals or crosses 1 (making the old*new product non-positive). - jQuery.style( elem, prop, initialInUnit + unit ); - if ( ( 1 - scale ) * ( 1 - ( scale = currentValue() / initial || 0.5 ) ) <= 0 ) { - maxIterations = 0; - } - initialInUnit = initialInUnit / scale; - - } - - initialInUnit = initialInUnit * 2; - jQuery.style( elem, prop, initialInUnit + unit ); - - // Make sure we update the tween properties later on - valueParts = valueParts || []; - } - - if ( valueParts ) { - initialInUnit = +initialInUnit || +initial || 0; - - // Apply relative offset (+=/-=) if specified - adjusted = valueParts[ 1 ] ? - initialInUnit + ( valueParts[ 1 ] + 1 ) * valueParts[ 2 ] : - +valueParts[ 2 ]; - if ( tween ) { - tween.unit = unit; - tween.start = initialInUnit; - tween.end = adjusted; - } - } - return adjusted; -} - - -var defaultDisplayMap = {}; - -function getDefaultDisplay( elem ) { - var temp, - doc = elem.ownerDocument, - nodeName = elem.nodeName, - display = defaultDisplayMap[ nodeName ]; - - if ( display ) { - return display; - } - - temp = doc.body.appendChild( doc.createElement( nodeName ) ); - display = jQuery.css( temp, "display" ); - - temp.parentNode.removeChild( temp ); - - if ( display === "none" ) { - display = "block"; - } - defaultDisplayMap[ nodeName ] = display; - - return display; -} - -function showHide( elements, show ) { - var display, elem, - values = [], - index = 0, - length = elements.length; - - // Determine new display value for elements that need to change - for ( ; index < length; index++ ) { - elem = elements[ index ]; - if ( !elem.style ) { - continue; - } - - display = elem.style.display; - if ( show ) { - - // Since we force visibility upon cascade-hidden elements, an immediate (and slow) - // check is required in this first loop unless we have a nonempty display value (either - // inline or about-to-be-restored) - if ( display === "none" ) { - values[ index ] = dataPriv.get( elem, "display" ) || null; - if ( !values[ index ] ) { - elem.style.display = ""; - } - } - if ( elem.style.display === "" && isHiddenWithinTree( elem ) ) { - values[ index ] = getDefaultDisplay( elem ); - } - } else { - if ( display !== "none" ) { - values[ index ] = "none"; - - // Remember what we're overwriting - dataPriv.set( elem, "display", display ); - } - } - } - - // Set the display of the elements in a second loop to avoid constant reflow - for ( index = 0; index < length; index++ ) { - if ( values[ index ] != null ) { - elements[ index ].style.display = values[ index ]; - } - } - - return elements; -} - -jQuery.fn.extend( { - show: function() { - return showHide( this, true ); - }, - hide: function() { - return showHide( this ); - }, - toggle: function( state ) { - if ( typeof state === "boolean" ) { - return state ? this.show() : this.hide(); - } - - return this.each( function() { - if ( isHiddenWithinTree( this ) ) { - jQuery( this ).show(); - } else { - jQuery( this ).hide(); - } - } ); - } -} ); -var rcheckableType = ( /^(?:checkbox|radio)$/i ); - -var rtagName = ( /<([a-z][^\/\0>\x20\t\r\n\f]*)/i ); - -var rscriptType = ( /^$|^module$|\/(?:java|ecma)script/i ); - - - -// We have to close these tags to support XHTML (#13200) -var wrapMap = { - - // Support: IE <=9 only - option: [ 1, "" ], - - // XHTML parsers do not magically insert elements in the - // same way that tag soup parsers do. So we cannot shorten - // this by omitting or other required elements. - thead: [ 1, "", "
    " ], - col: [ 2, "", "
    " ], - tr: [ 2, "", "
    " ], - td: [ 3, "", "
    " ], - - _default: [ 0, "", "" ] -}; - -// Support: IE <=9 only -wrapMap.optgroup = wrapMap.option; - -wrapMap.tbody = wrapMap.tfoot = wrapMap.colgroup = wrapMap.caption = wrapMap.thead; -wrapMap.th = wrapMap.td; - - -function getAll( context, tag ) { - - // Support: IE <=9 - 11 only - // Use typeof to avoid zero-argument method invocation on host objects (#15151) - var ret; - - if ( typeof context.getElementsByTagName !== "undefined" ) { - ret = context.getElementsByTagName( tag || "*" ); - - } else if ( typeof context.querySelectorAll !== "undefined" ) { - ret = context.querySelectorAll( tag || "*" ); - - } else { - ret = []; - } - - if ( tag === undefined || tag && nodeName( context, tag ) ) { - return jQuery.merge( [ context ], ret ); - } - - return ret; -} - - -// Mark scripts as having already been evaluated -function setGlobalEval( elems, refElements ) { - var i = 0, - l = elems.length; - - for ( ; i < l; i++ ) { - dataPriv.set( - elems[ i ], - "globalEval", - !refElements || dataPriv.get( refElements[ i ], "globalEval" ) - ); - } -} - - -var rhtml = /<|&#?\w+;/; - -function buildFragment( elems, context, scripts, selection, ignored ) { - var elem, tmp, tag, wrap, attached, j, - fragment = context.createDocumentFragment(), - nodes = [], - i = 0, - l = elems.length; - - for ( ; i < l; i++ ) { - elem = elems[ i ]; - - if ( elem || elem === 0 ) { - - // Add nodes directly - if ( toType( elem ) === "object" ) { - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - jQuery.merge( nodes, elem.nodeType ? [ elem ] : elem ); - - // Convert non-html into a text node - } else if ( !rhtml.test( elem ) ) { - nodes.push( context.createTextNode( elem ) ); - - // Convert html into DOM nodes - } else { - tmp = tmp || fragment.appendChild( context.createElement( "div" ) ); - - // Deserialize a standard representation - tag = ( rtagName.exec( elem ) || [ "", "" ] )[ 1 ].toLowerCase(); - wrap = wrapMap[ tag ] || wrapMap._default; - tmp.innerHTML = wrap[ 1 ] + jQuery.htmlPrefilter( elem ) + wrap[ 2 ]; - - // Descend through wrappers to the right content - j = wrap[ 0 ]; - while ( j-- ) { - tmp = tmp.lastChild; - } - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - jQuery.merge( nodes, tmp.childNodes ); - - // Remember the top-level container - tmp = fragment.firstChild; - - // Ensure the created nodes are orphaned (#12392) - tmp.textContent = ""; - } - } - } - - // Remove wrapper from fragment - fragment.textContent = ""; - - i = 0; - while ( ( elem = nodes[ i++ ] ) ) { - - // Skip elements already in the context collection (trac-4087) - if ( selection && jQuery.inArray( elem, selection ) > -1 ) { - if ( ignored ) { - ignored.push( elem ); - } - continue; - } - - attached = isAttached( elem ); - - // Append to fragment - tmp = getAll( fragment.appendChild( elem ), "script" ); - - // Preserve script evaluation history - if ( attached ) { - setGlobalEval( tmp ); - } - - // Capture executables - if ( scripts ) { - j = 0; - while ( ( elem = tmp[ j++ ] ) ) { - if ( rscriptType.test( elem.type || "" ) ) { - scripts.push( elem ); - } - } - } - } - - return fragment; -} - - -( function() { - var fragment = document.createDocumentFragment(), - div = fragment.appendChild( document.createElement( "div" ) ), - input = document.createElement( "input" ); - - // Support: Android 4.0 - 4.3 only - // Check state lost if the name is set (#11217) - // Support: Windows Web Apps (WWA) - // `name` and `type` must use .setAttribute for WWA (#14901) - input.setAttribute( "type", "radio" ); - input.setAttribute( "checked", "checked" ); - input.setAttribute( "name", "t" ); - - div.appendChild( input ); - - // Support: Android <=4.1 only - // Older WebKit doesn't clone checked state correctly in fragments - support.checkClone = div.cloneNode( true ).cloneNode( true ).lastChild.checked; - - // Support: IE <=11 only - // Make sure textarea (and checkbox) defaultValue is properly cloned - div.innerHTML = ""; - support.noCloneChecked = !!div.cloneNode( true ).lastChild.defaultValue; -} )(); - - -var - rkeyEvent = /^key/, - rmouseEvent = /^(?:mouse|pointer|contextmenu|drag|drop)|click/, - rtypenamespace = /^([^.]*)(?:\.(.+)|)/; - -function returnTrue() { - return true; -} - -function returnFalse() { - return false; -} - -// Support: IE <=9 - 11+ -// focus() and blur() are asynchronous, except when they are no-op. -// So expect focus to be synchronous when the element is already active, -// and blur to be synchronous when the element is not already active. -// (focus and blur are always synchronous in other supported browsers, -// this just defines when we can count on it). -function expectSync( elem, type ) { - return ( elem === safeActiveElement() ) === ( type === "focus" ); -} - -// Support: IE <=9 only -// Accessing document.activeElement can throw unexpectedly -// https://bugs.jquery.com/ticket/13393 -function safeActiveElement() { - try { - return document.activeElement; - } catch ( err ) { } -} - -function on( elem, types, selector, data, fn, one ) { - var origFn, type; - - // Types can be a map of types/handlers - if ( typeof types === "object" ) { - - // ( types-Object, selector, data ) - if ( typeof selector !== "string" ) { - - // ( types-Object, data ) - data = data || selector; - selector = undefined; - } - for ( type in types ) { - on( elem, type, selector, data, types[ type ], one ); - } - return elem; - } - - if ( data == null && fn == null ) { - - // ( types, fn ) - fn = selector; - data = selector = undefined; - } else if ( fn == null ) { - if ( typeof selector === "string" ) { - - // ( types, selector, fn ) - fn = data; - data = undefined; - } else { - - // ( types, data, fn ) - fn = data; - data = selector; - selector = undefined; - } - } - if ( fn === false ) { - fn = returnFalse; - } else if ( !fn ) { - return elem; - } - - if ( one === 1 ) { - origFn = fn; - fn = function( event ) { - - // Can use an empty set, since event contains the info - jQuery().off( event ); - return origFn.apply( this, arguments ); - }; - - // Use same guid so caller can remove using origFn - fn.guid = origFn.guid || ( origFn.guid = jQuery.guid++ ); - } - return elem.each( function() { - jQuery.event.add( this, types, fn, data, selector ); - } ); -} - -/* - * Helper functions for managing events -- not part of the public interface. - * Props to Dean Edwards' addEvent library for many of the ideas. - */ -jQuery.event = { - - global: {}, - - add: function( elem, types, handler, data, selector ) { - - var handleObjIn, eventHandle, tmp, - events, t, handleObj, - special, handlers, type, namespaces, origType, - elemData = dataPriv.get( elem ); - - // Don't attach events to noData or text/comment nodes (but allow plain objects) - if ( !elemData ) { - return; - } - - // Caller can pass in an object of custom data in lieu of the handler - if ( handler.handler ) { - handleObjIn = handler; - handler = handleObjIn.handler; - selector = handleObjIn.selector; - } - - // Ensure that invalid selectors throw exceptions at attach time - // Evaluate against documentElement in case elem is a non-element node (e.g., document) - if ( selector ) { - jQuery.find.matchesSelector( documentElement, selector ); - } - - // Make sure that the handler has a unique ID, used to find/remove it later - if ( !handler.guid ) { - handler.guid = jQuery.guid++; - } - - // Init the element's event structure and main handler, if this is the first - if ( !( events = elemData.events ) ) { - events = elemData.events = {}; - } - if ( !( eventHandle = elemData.handle ) ) { - eventHandle = elemData.handle = function( e ) { - - // Discard the second event of a jQuery.event.trigger() and - // when an event is called after a page has unloaded - return typeof jQuery !== "undefined" && jQuery.event.triggered !== e.type ? - jQuery.event.dispatch.apply( elem, arguments ) : undefined; - }; - } - - // Handle multiple events separated by a space - types = ( types || "" ).match( rnothtmlwhite ) || [ "" ]; - t = types.length; - while ( t-- ) { - tmp = rtypenamespace.exec( types[ t ] ) || []; - type = origType = tmp[ 1 ]; - namespaces = ( tmp[ 2 ] || "" ).split( "." ).sort(); - - // There *must* be a type, no attaching namespace-only handlers - if ( !type ) { - continue; - } - - // If event changes its type, use the special event handlers for the changed type - special = jQuery.event.special[ type ] || {}; - - // If selector defined, determine special event api type, otherwise given type - type = ( selector ? special.delegateType : special.bindType ) || type; - - // Update special based on newly reset type - special = jQuery.event.special[ type ] || {}; - - // handleObj is passed to all event handlers - handleObj = jQuery.extend( { - type: type, - origType: origType, - data: data, - handler: handler, - guid: handler.guid, - selector: selector, - needsContext: selector && jQuery.expr.match.needsContext.test( selector ), - namespace: namespaces.join( "." ) - }, handleObjIn ); - - // Init the event handler queue if we're the first - if ( !( handlers = events[ type ] ) ) { - handlers = events[ type ] = []; - handlers.delegateCount = 0; - - // Only use addEventListener if the special events handler returns false - if ( !special.setup || - special.setup.call( elem, data, namespaces, eventHandle ) === false ) { - - if ( elem.addEventListener ) { - elem.addEventListener( type, eventHandle ); - } - } - } - - if ( special.add ) { - special.add.call( elem, handleObj ); - - if ( !handleObj.handler.guid ) { - handleObj.handler.guid = handler.guid; - } - } - - // Add to the element's handler list, delegates in front - if ( selector ) { - handlers.splice( handlers.delegateCount++, 0, handleObj ); - } else { - handlers.push( handleObj ); - } - - // Keep track of which events have ever been used, for event optimization - jQuery.event.global[ type ] = true; - } - - }, - - // Detach an event or set of events from an element - remove: function( elem, types, handler, selector, mappedTypes ) { - - var j, origCount, tmp, - events, t, handleObj, - special, handlers, type, namespaces, origType, - elemData = dataPriv.hasData( elem ) && dataPriv.get( elem ); - - if ( !elemData || !( events = elemData.events ) ) { - return; - } - - // Once for each type.namespace in types; type may be omitted - types = ( types || "" ).match( rnothtmlwhite ) || [ "" ]; - t = types.length; - while ( t-- ) { - tmp = rtypenamespace.exec( types[ t ] ) || []; - type = origType = tmp[ 1 ]; - namespaces = ( tmp[ 2 ] || "" ).split( "." ).sort(); - - // Unbind all events (on this namespace, if provided) for the element - if ( !type ) { - for ( type in events ) { - jQuery.event.remove( elem, type + types[ t ], handler, selector, true ); - } - continue; - } - - special = jQuery.event.special[ type ] || {}; - type = ( selector ? special.delegateType : special.bindType ) || type; - handlers = events[ type ] || []; - tmp = tmp[ 2 ] && - new RegExp( "(^|\\.)" + namespaces.join( "\\.(?:.*\\.|)" ) + "(\\.|$)" ); - - // Remove matching events - origCount = j = handlers.length; - while ( j-- ) { - handleObj = handlers[ j ]; - - if ( ( mappedTypes || origType === handleObj.origType ) && - ( !handler || handler.guid === handleObj.guid ) && - ( !tmp || tmp.test( handleObj.namespace ) ) && - ( !selector || selector === handleObj.selector || - selector === "**" && handleObj.selector ) ) { - handlers.splice( j, 1 ); - - if ( handleObj.selector ) { - handlers.delegateCount--; - } - if ( special.remove ) { - special.remove.call( elem, handleObj ); - } - } - } - - // Remove generic event handler if we removed something and no more handlers exist - // (avoids potential for endless recursion during removal of special event handlers) - if ( origCount && !handlers.length ) { - if ( !special.teardown || - special.teardown.call( elem, namespaces, elemData.handle ) === false ) { - - jQuery.removeEvent( elem, type, elemData.handle ); - } - - delete events[ type ]; - } - } - - // Remove data and the expando if it's no longer used - if ( jQuery.isEmptyObject( events ) ) { - dataPriv.remove( elem, "handle events" ); - } - }, - - dispatch: function( nativeEvent ) { - - // Make a writable jQuery.Event from the native event object - var event = jQuery.event.fix( nativeEvent ); - - var i, j, ret, matched, handleObj, handlerQueue, - args = new Array( arguments.length ), - handlers = ( dataPriv.get( this, "events" ) || {} )[ event.type ] || [], - special = jQuery.event.special[ event.type ] || {}; - - // Use the fix-ed jQuery.Event rather than the (read-only) native event - args[ 0 ] = event; - - for ( i = 1; i < arguments.length; i++ ) { - args[ i ] = arguments[ i ]; - } - - event.delegateTarget = this; - - // Call the preDispatch hook for the mapped type, and let it bail if desired - if ( special.preDispatch && special.preDispatch.call( this, event ) === false ) { - return; - } - - // Determine handlers - handlerQueue = jQuery.event.handlers.call( this, event, handlers ); - - // Run delegates first; they may want to stop propagation beneath us - i = 0; - while ( ( matched = handlerQueue[ i++ ] ) && !event.isPropagationStopped() ) { - event.currentTarget = matched.elem; - - j = 0; - while ( ( handleObj = matched.handlers[ j++ ] ) && - !event.isImmediatePropagationStopped() ) { - - // If the event is namespaced, then each handler is only invoked if it is - // specially universal or its namespaces are a superset of the event's. - if ( !event.rnamespace || handleObj.namespace === false || - event.rnamespace.test( handleObj.namespace ) ) { - - event.handleObj = handleObj; - event.data = handleObj.data; - - ret = ( ( jQuery.event.special[ handleObj.origType ] || {} ).handle || - handleObj.handler ).apply( matched.elem, args ); - - if ( ret !== undefined ) { - if ( ( event.result = ret ) === false ) { - event.preventDefault(); - event.stopPropagation(); - } - } - } - } - } - - // Call the postDispatch hook for the mapped type - if ( special.postDispatch ) { - special.postDispatch.call( this, event ); - } - - return event.result; - }, - - handlers: function( event, handlers ) { - var i, handleObj, sel, matchedHandlers, matchedSelectors, - handlerQueue = [], - delegateCount = handlers.delegateCount, - cur = event.target; - - // Find delegate handlers - if ( delegateCount && - - // Support: IE <=9 - // Black-hole SVG instance trees (trac-13180) - cur.nodeType && - - // Support: Firefox <=42 - // Suppress spec-violating clicks indicating a non-primary pointer button (trac-3861) - // https://www.w3.org/TR/DOM-Level-3-Events/#event-type-click - // Support: IE 11 only - // ...but not arrow key "clicks" of radio inputs, which can have `button` -1 (gh-2343) - !( event.type === "click" && event.button >= 1 ) ) { - - for ( ; cur !== this; cur = cur.parentNode || this ) { - - // Don't check non-elements (#13208) - // Don't process clicks on disabled elements (#6911, #8165, #11382, #11764) - if ( cur.nodeType === 1 && !( event.type === "click" && cur.disabled === true ) ) { - matchedHandlers = []; - matchedSelectors = {}; - for ( i = 0; i < delegateCount; i++ ) { - handleObj = handlers[ i ]; - - // Don't conflict with Object.prototype properties (#13203) - sel = handleObj.selector + " "; - - if ( matchedSelectors[ sel ] === undefined ) { - matchedSelectors[ sel ] = handleObj.needsContext ? - jQuery( sel, this ).index( cur ) > -1 : - jQuery.find( sel, this, null, [ cur ] ).length; - } - if ( matchedSelectors[ sel ] ) { - matchedHandlers.push( handleObj ); - } - } - if ( matchedHandlers.length ) { - handlerQueue.push( { elem: cur, handlers: matchedHandlers } ); - } - } - } - } - - // Add the remaining (directly-bound) handlers - cur = this; - if ( delegateCount < handlers.length ) { - handlerQueue.push( { elem: cur, handlers: handlers.slice( delegateCount ) } ); - } - - return handlerQueue; - }, - - addProp: function( name, hook ) { - Object.defineProperty( jQuery.Event.prototype, name, { - enumerable: true, - configurable: true, - - get: isFunction( hook ) ? - function() { - if ( this.originalEvent ) { - return hook( this.originalEvent ); - } - } : - function() { - if ( this.originalEvent ) { - return this.originalEvent[ name ]; - } - }, - - set: function( value ) { - Object.defineProperty( this, name, { - enumerable: true, - configurable: true, - writable: true, - value: value - } ); - } - } ); - }, - - fix: function( originalEvent ) { - return originalEvent[ jQuery.expando ] ? - originalEvent : - new jQuery.Event( originalEvent ); - }, - - special: { - load: { - - // Prevent triggered image.load events from bubbling to window.load - noBubble: true - }, - click: { - - // Utilize native event to ensure correct state for checkable inputs - setup: function( data ) { - - // For mutual compressibility with _default, replace `this` access with a local var. - // `|| data` is dead code meant only to preserve the variable through minification. - var el = this || data; - - // Claim the first handler - if ( rcheckableType.test( el.type ) && - el.click && nodeName( el, "input" ) ) { - - // dataPriv.set( el, "click", ... ) - leverageNative( el, "click", returnTrue ); - } - - // Return false to allow normal processing in the caller - return false; - }, - trigger: function( data ) { - - // For mutual compressibility with _default, replace `this` access with a local var. - // `|| data` is dead code meant only to preserve the variable through minification. - var el = this || data; - - // Force setup before triggering a click - if ( rcheckableType.test( el.type ) && - el.click && nodeName( el, "input" ) ) { - - leverageNative( el, "click" ); - } - - // Return non-false to allow normal event-path propagation - return true; - }, - - // For cross-browser consistency, suppress native .click() on links - // Also prevent it if we're currently inside a leveraged native-event stack - _default: function( event ) { - var target = event.target; - return rcheckableType.test( target.type ) && - target.click && nodeName( target, "input" ) && - dataPriv.get( target, "click" ) || - nodeName( target, "a" ); - } - }, - - beforeunload: { - postDispatch: function( event ) { - - // Support: Firefox 20+ - // Firefox doesn't alert if the returnValue field is not set. - if ( event.result !== undefined && event.originalEvent ) { - event.originalEvent.returnValue = event.result; - } - } - } - } -}; - -// Ensure the presence of an event listener that handles manually-triggered -// synthetic events by interrupting progress until reinvoked in response to -// *native* events that it fires directly, ensuring that state changes have -// already occurred before other listeners are invoked. -function leverageNative( el, type, expectSync ) { - - // Missing expectSync indicates a trigger call, which must force setup through jQuery.event.add - if ( !expectSync ) { - if ( dataPriv.get( el, type ) === undefined ) { - jQuery.event.add( el, type, returnTrue ); - } - return; - } - - // Register the controller as a special universal handler for all event namespaces - dataPriv.set( el, type, false ); - jQuery.event.add( el, type, { - namespace: false, - handler: function( event ) { - var notAsync, result, - saved = dataPriv.get( this, type ); - - if ( ( event.isTrigger & 1 ) && this[ type ] ) { - - // Interrupt processing of the outer synthetic .trigger()ed event - // Saved data should be false in such cases, but might be a leftover capture object - // from an async native handler (gh-4350) - if ( !saved.length ) { - - // Store arguments for use when handling the inner native event - // There will always be at least one argument (an event object), so this array - // will not be confused with a leftover capture object. - saved = slice.call( arguments ); - dataPriv.set( this, type, saved ); - - // Trigger the native event and capture its result - // Support: IE <=9 - 11+ - // focus() and blur() are asynchronous - notAsync = expectSync( this, type ); - this[ type ](); - result = dataPriv.get( this, type ); - if ( saved !== result || notAsync ) { - dataPriv.set( this, type, false ); - } else { - result = {}; - } - if ( saved !== result ) { - - // Cancel the outer synthetic event - event.stopImmediatePropagation(); - event.preventDefault(); - return result.value; - } - - // If this is an inner synthetic event for an event with a bubbling surrogate - // (focus or blur), assume that the surrogate already propagated from triggering the - // native event and prevent that from happening again here. - // This technically gets the ordering wrong w.r.t. to `.trigger()` (in which the - // bubbling surrogate propagates *after* the non-bubbling base), but that seems - // less bad than duplication. - } else if ( ( jQuery.event.special[ type ] || {} ).delegateType ) { - event.stopPropagation(); - } - - // If this is a native event triggered above, everything is now in order - // Fire an inner synthetic event with the original arguments - } else if ( saved.length ) { - - // ...and capture the result - dataPriv.set( this, type, { - value: jQuery.event.trigger( - - // Support: IE <=9 - 11+ - // Extend with the prototype to reset the above stopImmediatePropagation() - jQuery.extend( saved[ 0 ], jQuery.Event.prototype ), - saved.slice( 1 ), - this - ) - } ); - - // Abort handling of the native event - event.stopImmediatePropagation(); - } - } - } ); -} - -jQuery.removeEvent = function( elem, type, handle ) { - - // This "if" is needed for plain objects - if ( elem.removeEventListener ) { - elem.removeEventListener( type, handle ); - } -}; - -jQuery.Event = function( src, props ) { - - // Allow instantiation without the 'new' keyword - if ( !( this instanceof jQuery.Event ) ) { - return new jQuery.Event( src, props ); - } - - // Event object - if ( src && src.type ) { - this.originalEvent = src; - this.type = src.type; - - // Events bubbling up the document may have been marked as prevented - // by a handler lower down the tree; reflect the correct value. - this.isDefaultPrevented = src.defaultPrevented || - src.defaultPrevented === undefined && - - // Support: Android <=2.3 only - src.returnValue === false ? - returnTrue : - returnFalse; - - // Create target properties - // Support: Safari <=6 - 7 only - // Target should not be a text node (#504, #13143) - this.target = ( src.target && src.target.nodeType === 3 ) ? - src.target.parentNode : - src.target; - - this.currentTarget = src.currentTarget; - this.relatedTarget = src.relatedTarget; - - // Event type - } else { - this.type = src; - } - - // Put explicitly provided properties onto the event object - if ( props ) { - jQuery.extend( this, props ); - } - - // Create a timestamp if incoming event doesn't have one - this.timeStamp = src && src.timeStamp || Date.now(); - - // Mark it as fixed - this[ jQuery.expando ] = true; -}; - -// jQuery.Event is based on DOM3 Events as specified by the ECMAScript Language Binding -// https://www.w3.org/TR/2003/WD-DOM-Level-3-Events-20030331/ecma-script-binding.html -jQuery.Event.prototype = { - constructor: jQuery.Event, - isDefaultPrevented: returnFalse, - isPropagationStopped: returnFalse, - isImmediatePropagationStopped: returnFalse, - isSimulated: false, - - preventDefault: function() { - var e = this.originalEvent; - - this.isDefaultPrevented = returnTrue; - - if ( e && !this.isSimulated ) { - e.preventDefault(); - } - }, - stopPropagation: function() { - var e = this.originalEvent; - - this.isPropagationStopped = returnTrue; - - if ( e && !this.isSimulated ) { - e.stopPropagation(); - } - }, - stopImmediatePropagation: function() { - var e = this.originalEvent; - - this.isImmediatePropagationStopped = returnTrue; - - if ( e && !this.isSimulated ) { - e.stopImmediatePropagation(); - } - - this.stopPropagation(); - } -}; - -// Includes all common event props including KeyEvent and MouseEvent specific props -jQuery.each( { - altKey: true, - bubbles: true, - cancelable: true, - changedTouches: true, - ctrlKey: true, - detail: true, - eventPhase: true, - metaKey: true, - pageX: true, - pageY: true, - shiftKey: true, - view: true, - "char": true, - code: true, - charCode: true, - key: true, - keyCode: true, - button: true, - buttons: true, - clientX: true, - clientY: true, - offsetX: true, - offsetY: true, - pointerId: true, - pointerType: true, - screenX: true, - screenY: true, - targetTouches: true, - toElement: true, - touches: true, - - which: function( event ) { - var button = event.button; - - // Add which for key events - if ( event.which == null && rkeyEvent.test( event.type ) ) { - return event.charCode != null ? event.charCode : event.keyCode; - } - - // Add which for click: 1 === left; 2 === middle; 3 === right - if ( !event.which && button !== undefined && rmouseEvent.test( event.type ) ) { - if ( button & 1 ) { - return 1; - } - - if ( button & 2 ) { - return 3; - } - - if ( button & 4 ) { - return 2; - } - - return 0; - } - - return event.which; - } -}, jQuery.event.addProp ); - -jQuery.each( { focus: "focusin", blur: "focusout" }, function( type, delegateType ) { - jQuery.event.special[ type ] = { - - // Utilize native event if possible so blur/focus sequence is correct - setup: function() { - - // Claim the first handler - // dataPriv.set( this, "focus", ... ) - // dataPriv.set( this, "blur", ... ) - leverageNative( this, type, expectSync ); - - // Return false to allow normal processing in the caller - return false; - }, - trigger: function() { - - // Force setup before trigger - leverageNative( this, type ); - - // Return non-false to allow normal event-path propagation - return true; - }, - - delegateType: delegateType - }; -} ); - -// Create mouseenter/leave events using mouseover/out and event-time checks -// so that event delegation works in jQuery. -// Do the same for pointerenter/pointerleave and pointerover/pointerout -// -// Support: Safari 7 only -// Safari sends mouseenter too often; see: -// https://bugs.chromium.org/p/chromium/issues/detail?id=470258 -// for the description of the bug (it existed in older Chrome versions as well). -jQuery.each( { - mouseenter: "mouseover", - mouseleave: "mouseout", - pointerenter: "pointerover", - pointerleave: "pointerout" -}, function( orig, fix ) { - jQuery.event.special[ orig ] = { - delegateType: fix, - bindType: fix, - - handle: function( event ) { - var ret, - target = this, - related = event.relatedTarget, - handleObj = event.handleObj; - - // For mouseenter/leave call the handler if related is outside the target. - // NB: No relatedTarget if the mouse left/entered the browser window - if ( !related || ( related !== target && !jQuery.contains( target, related ) ) ) { - event.type = handleObj.origType; - ret = handleObj.handler.apply( this, arguments ); - event.type = fix; - } - return ret; - } - }; -} ); - -jQuery.fn.extend( { - - on: function( types, selector, data, fn ) { - return on( this, types, selector, data, fn ); - }, - one: function( types, selector, data, fn ) { - return on( this, types, selector, data, fn, 1 ); - }, - off: function( types, selector, fn ) { - var handleObj, type; - if ( types && types.preventDefault && types.handleObj ) { - - // ( event ) dispatched jQuery.Event - handleObj = types.handleObj; - jQuery( types.delegateTarget ).off( - handleObj.namespace ? - handleObj.origType + "." + handleObj.namespace : - handleObj.origType, - handleObj.selector, - handleObj.handler - ); - return this; - } - if ( typeof types === "object" ) { - - // ( types-object [, selector] ) - for ( type in types ) { - this.off( type, selector, types[ type ] ); - } - return this; - } - if ( selector === false || typeof selector === "function" ) { - - // ( types [, fn] ) - fn = selector; - selector = undefined; - } - if ( fn === false ) { - fn = returnFalse; - } - return this.each( function() { - jQuery.event.remove( this, types, fn, selector ); - } ); - } -} ); - - -var - - /* eslint-disable max-len */ - - // See https://github.com/eslint/eslint/issues/3229 - rxhtmlTag = /<(?!area|br|col|embed|hr|img|input|link|meta|param)(([a-z][^\/\0>\x20\t\r\n\f]*)[^>]*)\/>/gi, - - /* eslint-enable */ - - // Support: IE <=10 - 11, Edge 12 - 13 only - // In IE/Edge using regex groups here causes severe slowdowns. - // See https://connect.microsoft.com/IE/feedback/details/1736512/ - rnoInnerhtml = /\s*$/g; - -// Prefer a tbody over its parent table for containing new rows -function manipulationTarget( elem, content ) { - if ( nodeName( elem, "table" ) && - nodeName( content.nodeType !== 11 ? content : content.firstChild, "tr" ) ) { - - return jQuery( elem ).children( "tbody" )[ 0 ] || elem; - } - - return elem; -} - -// Replace/restore the type attribute of script elements for safe DOM manipulation -function disableScript( elem ) { - elem.type = ( elem.getAttribute( "type" ) !== null ) + "/" + elem.type; - return elem; -} -function restoreScript( elem ) { - if ( ( elem.type || "" ).slice( 0, 5 ) === "true/" ) { - elem.type = elem.type.slice( 5 ); - } else { - elem.removeAttribute( "type" ); - } - - return elem; -} - -function cloneCopyEvent( src, dest ) { - var i, l, type, pdataOld, pdataCur, udataOld, udataCur, events; - - if ( dest.nodeType !== 1 ) { - return; - } - - // 1. Copy private data: events, handlers, etc. - if ( dataPriv.hasData( src ) ) { - pdataOld = dataPriv.access( src ); - pdataCur = dataPriv.set( dest, pdataOld ); - events = pdataOld.events; - - if ( events ) { - delete pdataCur.handle; - pdataCur.events = {}; - - for ( type in events ) { - for ( i = 0, l = events[ type ].length; i < l; i++ ) { - jQuery.event.add( dest, type, events[ type ][ i ] ); - } - } - } - } - - // 2. Copy user data - if ( dataUser.hasData( src ) ) { - udataOld = dataUser.access( src ); - udataCur = jQuery.extend( {}, udataOld ); - - dataUser.set( dest, udataCur ); - } -} - -// Fix IE bugs, see support tests -function fixInput( src, dest ) { - var nodeName = dest.nodeName.toLowerCase(); - - // Fails to persist the checked state of a cloned checkbox or radio button. - if ( nodeName === "input" && rcheckableType.test( src.type ) ) { - dest.checked = src.checked; - - // Fails to return the selected option to the default selected state when cloning options - } else if ( nodeName === "input" || nodeName === "textarea" ) { - dest.defaultValue = src.defaultValue; - } -} - -function domManip( collection, args, callback, ignored ) { - - // Flatten any nested arrays - args = concat.apply( [], args ); - - var fragment, first, scripts, hasScripts, node, doc, - i = 0, - l = collection.length, - iNoClone = l - 1, - value = args[ 0 ], - valueIsFunction = isFunction( value ); - - // We can't cloneNode fragments that contain checked, in WebKit - if ( valueIsFunction || - ( l > 1 && typeof value === "string" && - !support.checkClone && rchecked.test( value ) ) ) { - return collection.each( function( index ) { - var self = collection.eq( index ); - if ( valueIsFunction ) { - args[ 0 ] = value.call( this, index, self.html() ); - } - domManip( self, args, callback, ignored ); - } ); - } - - if ( l ) { - fragment = buildFragment( args, collection[ 0 ].ownerDocument, false, collection, ignored ); - first = fragment.firstChild; - - if ( fragment.childNodes.length === 1 ) { - fragment = first; - } - - // Require either new content or an interest in ignored elements to invoke the callback - if ( first || ignored ) { - scripts = jQuery.map( getAll( fragment, "script" ), disableScript ); - hasScripts = scripts.length; - - // Use the original fragment for the last item - // instead of the first because it can end up - // being emptied incorrectly in certain situations (#8070). - for ( ; i < l; i++ ) { - node = fragment; - - if ( i !== iNoClone ) { - node = jQuery.clone( node, true, true ); - - // Keep references to cloned scripts for later restoration - if ( hasScripts ) { - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - jQuery.merge( scripts, getAll( node, "script" ) ); - } - } - - callback.call( collection[ i ], node, i ); - } - - if ( hasScripts ) { - doc = scripts[ scripts.length - 1 ].ownerDocument; - - // Reenable scripts - jQuery.map( scripts, restoreScript ); - - // Evaluate executable scripts on first document insertion - for ( i = 0; i < hasScripts; i++ ) { - node = scripts[ i ]; - if ( rscriptType.test( node.type || "" ) && - !dataPriv.access( node, "globalEval" ) && - jQuery.contains( doc, node ) ) { - - if ( node.src && ( node.type || "" ).toLowerCase() !== "module" ) { - - // Optional AJAX dependency, but won't run scripts if not present - if ( jQuery._evalUrl && !node.noModule ) { - jQuery._evalUrl( node.src, { - nonce: node.nonce || node.getAttribute( "nonce" ) - } ); - } - } else { - DOMEval( node.textContent.replace( rcleanScript, "" ), node, doc ); - } - } - } - } - } - } - - return collection; -} - -function remove( elem, selector, keepData ) { - var node, - nodes = selector ? jQuery.filter( selector, elem ) : elem, - i = 0; - - for ( ; ( node = nodes[ i ] ) != null; i++ ) { - if ( !keepData && node.nodeType === 1 ) { - jQuery.cleanData( getAll( node ) ); - } - - if ( node.parentNode ) { - if ( keepData && isAttached( node ) ) { - setGlobalEval( getAll( node, "script" ) ); - } - node.parentNode.removeChild( node ); - } - } - - return elem; -} - -jQuery.extend( { - htmlPrefilter: function( html ) { - return html.replace( rxhtmlTag, "<$1>" ); - }, - - clone: function( elem, dataAndEvents, deepDataAndEvents ) { - var i, l, srcElements, destElements, - clone = elem.cloneNode( true ), - inPage = isAttached( elem ); - - // Fix IE cloning issues - if ( !support.noCloneChecked && ( elem.nodeType === 1 || elem.nodeType === 11 ) && - !jQuery.isXMLDoc( elem ) ) { - - // We eschew Sizzle here for performance reasons: https://jsperf.com/getall-vs-sizzle/2 - destElements = getAll( clone ); - srcElements = getAll( elem ); - - for ( i = 0, l = srcElements.length; i < l; i++ ) { - fixInput( srcElements[ i ], destElements[ i ] ); - } - } - - // Copy the events from the original to the clone - if ( dataAndEvents ) { - if ( deepDataAndEvents ) { - srcElements = srcElements || getAll( elem ); - destElements = destElements || getAll( clone ); - - for ( i = 0, l = srcElements.length; i < l; i++ ) { - cloneCopyEvent( srcElements[ i ], destElements[ i ] ); - } - } else { - cloneCopyEvent( elem, clone ); - } - } - - // Preserve script evaluation history - destElements = getAll( clone, "script" ); - if ( destElements.length > 0 ) { - setGlobalEval( destElements, !inPage && getAll( elem, "script" ) ); - } - - // Return the cloned set - return clone; - }, - - cleanData: function( elems ) { - var data, elem, type, - special = jQuery.event.special, - i = 0; - - for ( ; ( elem = elems[ i ] ) !== undefined; i++ ) { - if ( acceptData( elem ) ) { - if ( ( data = elem[ dataPriv.expando ] ) ) { - if ( data.events ) { - for ( type in data.events ) { - if ( special[ type ] ) { - jQuery.event.remove( elem, type ); - - // This is a shortcut to avoid jQuery.event.remove's overhead - } else { - jQuery.removeEvent( elem, type, data.handle ); - } - } - } - - // Support: Chrome <=35 - 45+ - // Assign undefined instead of using delete, see Data#remove - elem[ dataPriv.expando ] = undefined; - } - if ( elem[ dataUser.expando ] ) { - - // Support: Chrome <=35 - 45+ - // Assign undefined instead of using delete, see Data#remove - elem[ dataUser.expando ] = undefined; - } - } - } - } -} ); - -jQuery.fn.extend( { - detach: function( selector ) { - return remove( this, selector, true ); - }, - - remove: function( selector ) { - return remove( this, selector ); - }, - - text: function( value ) { - return access( this, function( value ) { - return value === undefined ? - jQuery.text( this ) : - this.empty().each( function() { - if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) { - this.textContent = value; - } - } ); - }, null, value, arguments.length ); - }, - - append: function() { - return domManip( this, arguments, function( elem ) { - if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) { - var target = manipulationTarget( this, elem ); - target.appendChild( elem ); - } - } ); - }, - - prepend: function() { - return domManip( this, arguments, function( elem ) { - if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) { - var target = manipulationTarget( this, elem ); - target.insertBefore( elem, target.firstChild ); - } - } ); - }, - - before: function() { - return domManip( this, arguments, function( elem ) { - if ( this.parentNode ) { - this.parentNode.insertBefore( elem, this ); - } - } ); - }, - - after: function() { - return domManip( this, arguments, function( elem ) { - if ( this.parentNode ) { - this.parentNode.insertBefore( elem, this.nextSibling ); - } - } ); - }, - - empty: function() { - var elem, - i = 0; - - for ( ; ( elem = this[ i ] ) != null; i++ ) { - if ( elem.nodeType === 1 ) { - - // Prevent memory leaks - jQuery.cleanData( getAll( elem, false ) ); - - // Remove any remaining nodes - elem.textContent = ""; - } - } - - return this; - }, - - clone: function( dataAndEvents, deepDataAndEvents ) { - dataAndEvents = dataAndEvents == null ? false : dataAndEvents; - deepDataAndEvents = deepDataAndEvents == null ? dataAndEvents : deepDataAndEvents; - - return this.map( function() { - return jQuery.clone( this, dataAndEvents, deepDataAndEvents ); - } ); - }, - - html: function( value ) { - return access( this, function( value ) { - var elem = this[ 0 ] || {}, - i = 0, - l = this.length; - - if ( value === undefined && elem.nodeType === 1 ) { - return elem.innerHTML; - } - - // See if we can take a shortcut and just use innerHTML - if ( typeof value === "string" && !rnoInnerhtml.test( value ) && - !wrapMap[ ( rtagName.exec( value ) || [ "", "" ] )[ 1 ].toLowerCase() ] ) { - - value = jQuery.htmlPrefilter( value ); - - try { - for ( ; i < l; i++ ) { - elem = this[ i ] || {}; - - // Remove element nodes and prevent memory leaks - if ( elem.nodeType === 1 ) { - jQuery.cleanData( getAll( elem, false ) ); - elem.innerHTML = value; - } - } - - elem = 0; - - // If using innerHTML throws an exception, use the fallback method - } catch ( e ) {} - } - - if ( elem ) { - this.empty().append( value ); - } - }, null, value, arguments.length ); - }, - - replaceWith: function() { - var ignored = []; - - // Make the changes, replacing each non-ignored context element with the new content - return domManip( this, arguments, function( elem ) { - var parent = this.parentNode; - - if ( jQuery.inArray( this, ignored ) < 0 ) { - jQuery.cleanData( getAll( this ) ); - if ( parent ) { - parent.replaceChild( elem, this ); - } - } - - // Force callback invocation - }, ignored ); - } -} ); - -jQuery.each( { - appendTo: "append", - prependTo: "prepend", - insertBefore: "before", - insertAfter: "after", - replaceAll: "replaceWith" -}, function( name, original ) { - jQuery.fn[ name ] = function( selector ) { - var elems, - ret = [], - insert = jQuery( selector ), - last = insert.length - 1, - i = 0; - - for ( ; i <= last; i++ ) { - elems = i === last ? this : this.clone( true ); - jQuery( insert[ i ] )[ original ]( elems ); - - // Support: Android <=4.0 only, PhantomJS 1 only - // .get() because push.apply(_, arraylike) throws on ancient WebKit - push.apply( ret, elems.get() ); - } - - return this.pushStack( ret ); - }; -} ); -var rnumnonpx = new RegExp( "^(" + pnum + ")(?!px)[a-z%]+$", "i" ); - -var getStyles = function( elem ) { - - // Support: IE <=11 only, Firefox <=30 (#15098, #14150) - // IE throws on elements created in popups - // FF meanwhile throws on frame elements through "defaultView.getComputedStyle" - var view = elem.ownerDocument.defaultView; - - if ( !view || !view.opener ) { - view = window; - } - - return view.getComputedStyle( elem ); - }; - -var rboxStyle = new RegExp( cssExpand.join( "|" ), "i" ); - - - -( function() { - - // Executing both pixelPosition & boxSizingReliable tests require only one layout - // so they're executed at the same time to save the second computation. - function computeStyleTests() { - - // This is a singleton, we need to execute it only once - if ( !div ) { - return; - } - - container.style.cssText = "position:absolute;left:-11111px;width:60px;" + - "margin-top:1px;padding:0;border:0"; - div.style.cssText = - "position:relative;display:block;box-sizing:border-box;overflow:scroll;" + - "margin:auto;border:1px;padding:1px;" + - "width:60%;top:1%"; - documentElement.appendChild( container ).appendChild( div ); - - var divStyle = window.getComputedStyle( div ); - pixelPositionVal = divStyle.top !== "1%"; - - // Support: Android 4.0 - 4.3 only, Firefox <=3 - 44 - reliableMarginLeftVal = roundPixelMeasures( divStyle.marginLeft ) === 12; - - // Support: Android 4.0 - 4.3 only, Safari <=9.1 - 10.1, iOS <=7.0 - 9.3 - // Some styles come back with percentage values, even though they shouldn't - div.style.right = "60%"; - pixelBoxStylesVal = roundPixelMeasures( divStyle.right ) === 36; - - // Support: IE 9 - 11 only - // Detect misreporting of content dimensions for box-sizing:border-box elements - boxSizingReliableVal = roundPixelMeasures( divStyle.width ) === 36; - - // Support: IE 9 only - // Detect overflow:scroll screwiness (gh-3699) - // Support: Chrome <=64 - // Don't get tricked when zoom affects offsetWidth (gh-4029) - div.style.position = "absolute"; - scrollboxSizeVal = roundPixelMeasures( div.offsetWidth / 3 ) === 12; - - documentElement.removeChild( container ); - - // Nullify the div so it wouldn't be stored in the memory and - // it will also be a sign that checks already performed - div = null; - } - - function roundPixelMeasures( measure ) { - return Math.round( parseFloat( measure ) ); - } - - var pixelPositionVal, boxSizingReliableVal, scrollboxSizeVal, pixelBoxStylesVal, - reliableMarginLeftVal, - container = document.createElement( "div" ), - div = document.createElement( "div" ); - - // Finish early in limited (non-browser) environments - if ( !div.style ) { - return; - } - - // Support: IE <=9 - 11 only - // Style of cloned element affects source element cloned (#8908) - div.style.backgroundClip = "content-box"; - div.cloneNode( true ).style.backgroundClip = ""; - support.clearCloneStyle = div.style.backgroundClip === "content-box"; - - jQuery.extend( support, { - boxSizingReliable: function() { - computeStyleTests(); - return boxSizingReliableVal; - }, - pixelBoxStyles: function() { - computeStyleTests(); - return pixelBoxStylesVal; - }, - pixelPosition: function() { - computeStyleTests(); - return pixelPositionVal; - }, - reliableMarginLeft: function() { - computeStyleTests(); - return reliableMarginLeftVal; - }, - scrollboxSize: function() { - computeStyleTests(); - return scrollboxSizeVal; - } - } ); -} )(); - - -function curCSS( elem, name, computed ) { - var width, minWidth, maxWidth, ret, - - // Support: Firefox 51+ - // Retrieving style before computed somehow - // fixes an issue with getting wrong values - // on detached elements - style = elem.style; - - computed = computed || getStyles( elem ); - - // getPropertyValue is needed for: - // .css('filter') (IE 9 only, #12537) - // .css('--customProperty) (#3144) - if ( computed ) { - ret = computed.getPropertyValue( name ) || computed[ name ]; - - if ( ret === "" && !isAttached( elem ) ) { - ret = jQuery.style( elem, name ); - } - - // A tribute to the "awesome hack by Dean Edwards" - // Android Browser returns percentage for some values, - // but width seems to be reliably pixels. - // This is against the CSSOM draft spec: - // https://drafts.csswg.org/cssom/#resolved-values - if ( !support.pixelBoxStyles() && rnumnonpx.test( ret ) && rboxStyle.test( name ) ) { - - // Remember the original values - width = style.width; - minWidth = style.minWidth; - maxWidth = style.maxWidth; - - // Put in the new values to get a computed value out - style.minWidth = style.maxWidth = style.width = ret; - ret = computed.width; - - // Revert the changed values - style.width = width; - style.minWidth = minWidth; - style.maxWidth = maxWidth; - } - } - - return ret !== undefined ? - - // Support: IE <=9 - 11 only - // IE returns zIndex value as an integer. - ret + "" : - ret; -} - - -function addGetHookIf( conditionFn, hookFn ) { - - // Define the hook, we'll check on the first run if it's really needed. - return { - get: function() { - if ( conditionFn() ) { - - // Hook not needed (or it's not possible to use it due - // to missing dependency), remove it. - delete this.get; - return; - } - - // Hook needed; redefine it so that the support test is not executed again. - return ( this.get = hookFn ).apply( this, arguments ); - } - }; -} - - -var cssPrefixes = [ "Webkit", "Moz", "ms" ], - emptyStyle = document.createElement( "div" ).style, - vendorProps = {}; - -// Return a vendor-prefixed property or undefined -function vendorPropName( name ) { - - // Check for vendor prefixed names - var capName = name[ 0 ].toUpperCase() + name.slice( 1 ), - i = cssPrefixes.length; - - while ( i-- ) { - name = cssPrefixes[ i ] + capName; - if ( name in emptyStyle ) { - return name; - } - } -} - -// Return a potentially-mapped jQuery.cssProps or vendor prefixed property -function finalPropName( name ) { - var final = jQuery.cssProps[ name ] || vendorProps[ name ]; - - if ( final ) { - return final; - } - if ( name in emptyStyle ) { - return name; - } - return vendorProps[ name ] = vendorPropName( name ) || name; -} - - -var - - // Swappable if display is none or starts with table - // except "table", "table-cell", or "table-caption" - // See here for display values: https://developer.mozilla.org/en-US/docs/CSS/display - rdisplayswap = /^(none|table(?!-c[ea]).+)/, - rcustomProp = /^--/, - cssShow = { position: "absolute", visibility: "hidden", display: "block" }, - cssNormalTransform = { - letterSpacing: "0", - fontWeight: "400" - }; - -function setPositiveNumber( elem, value, subtract ) { - - // Any relative (+/-) values have already been - // normalized at this point - var matches = rcssNum.exec( value ); - return matches ? - - // Guard against undefined "subtract", e.g., when used as in cssHooks - Math.max( 0, matches[ 2 ] - ( subtract || 0 ) ) + ( matches[ 3 ] || "px" ) : - value; -} - -function boxModelAdjustment( elem, dimension, box, isBorderBox, styles, computedVal ) { - var i = dimension === "width" ? 1 : 0, - extra = 0, - delta = 0; - - // Adjustment may not be necessary - if ( box === ( isBorderBox ? "border" : "content" ) ) { - return 0; - } - - for ( ; i < 4; i += 2 ) { - - // Both box models exclude margin - if ( box === "margin" ) { - delta += jQuery.css( elem, box + cssExpand[ i ], true, styles ); - } - - // If we get here with a content-box, we're seeking "padding" or "border" or "margin" - if ( !isBorderBox ) { - - // Add padding - delta += jQuery.css( elem, "padding" + cssExpand[ i ], true, styles ); - - // For "border" or "margin", add border - if ( box !== "padding" ) { - delta += jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles ); - - // But still keep track of it otherwise - } else { - extra += jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles ); - } - - // If we get here with a border-box (content + padding + border), we're seeking "content" or - // "padding" or "margin" - } else { - - // For "content", subtract padding - if ( box === "content" ) { - delta -= jQuery.css( elem, "padding" + cssExpand[ i ], true, styles ); - } - - // For "content" or "padding", subtract border - if ( box !== "margin" ) { - delta -= jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles ); - } - } - } - - // Account for positive content-box scroll gutter when requested by providing computedVal - if ( !isBorderBox && computedVal >= 0 ) { - - // offsetWidth/offsetHeight is a rounded sum of content, padding, scroll gutter, and border - // Assuming integer scroll gutter, subtract the rest and round down - delta += Math.max( 0, Math.ceil( - elem[ "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ) ] - - computedVal - - delta - - extra - - 0.5 - - // If offsetWidth/offsetHeight is unknown, then we can't determine content-box scroll gutter - // Use an explicit zero to avoid NaN (gh-3964) - ) ) || 0; - } - - return delta; -} - -function getWidthOrHeight( elem, dimension, extra ) { - - // Start with computed style - var styles = getStyles( elem ), - - // To avoid forcing a reflow, only fetch boxSizing if we need it (gh-4322). - // Fake content-box until we know it's needed to know the true value. - boxSizingNeeded = !support.boxSizingReliable() || extra, - isBorderBox = boxSizingNeeded && - jQuery.css( elem, "boxSizing", false, styles ) === "border-box", - valueIsBorderBox = isBorderBox, - - val = curCSS( elem, dimension, styles ), - offsetProp = "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ); - - // Support: Firefox <=54 - // Return a confounding non-pixel value or feign ignorance, as appropriate. - if ( rnumnonpx.test( val ) ) { - if ( !extra ) { - return val; - } - val = "auto"; - } - - - // Fall back to offsetWidth/offsetHeight when value is "auto" - // This happens for inline elements with no explicit setting (gh-3571) - // Support: Android <=4.1 - 4.3 only - // Also use offsetWidth/offsetHeight for misreported inline dimensions (gh-3602) - // Support: IE 9-11 only - // Also use offsetWidth/offsetHeight for when box sizing is unreliable - // We use getClientRects() to check for hidden/disconnected. - // In those cases, the computed value can be trusted to be border-box - if ( ( !support.boxSizingReliable() && isBorderBox || - val === "auto" || - !parseFloat( val ) && jQuery.css( elem, "display", false, styles ) === "inline" ) && - elem.getClientRects().length ) { - - isBorderBox = jQuery.css( elem, "boxSizing", false, styles ) === "border-box"; - - // Where available, offsetWidth/offsetHeight approximate border box dimensions. - // Where not available (e.g., SVG), assume unreliable box-sizing and interpret the - // retrieved value as a content box dimension. - valueIsBorderBox = offsetProp in elem; - if ( valueIsBorderBox ) { - val = elem[ offsetProp ]; - } - } - - // Normalize "" and auto - val = parseFloat( val ) || 0; - - // Adjust for the element's box model - return ( val + - boxModelAdjustment( - elem, - dimension, - extra || ( isBorderBox ? "border" : "content" ), - valueIsBorderBox, - styles, - - // Provide the current computed size to request scroll gutter calculation (gh-3589) - val - ) - ) + "px"; -} - -jQuery.extend( { - - // Add in style property hooks for overriding the default - // behavior of getting and setting a style property - cssHooks: { - opacity: { - get: function( elem, computed ) { - if ( computed ) { - - // We should always get a number back from opacity - var ret = curCSS( elem, "opacity" ); - return ret === "" ? "1" : ret; - } - } - } - }, - - // Don't automatically add "px" to these possibly-unitless properties - cssNumber: { - "animationIterationCount": true, - "columnCount": true, - "fillOpacity": true, - "flexGrow": true, - "flexShrink": true, - "fontWeight": true, - "gridArea": true, - "gridColumn": true, - "gridColumnEnd": true, - "gridColumnStart": true, - "gridRow": true, - "gridRowEnd": true, - "gridRowStart": true, - "lineHeight": true, - "opacity": true, - "order": true, - "orphans": true, - "widows": true, - "zIndex": true, - "zoom": true - }, - - // Add in properties whose names you wish to fix before - // setting or getting the value - cssProps: {}, - - // Get and set the style property on a DOM Node - style: function( elem, name, value, extra ) { - - // Don't set styles on text and comment nodes - if ( !elem || elem.nodeType === 3 || elem.nodeType === 8 || !elem.style ) { - return; - } - - // Make sure that we're working with the right name - var ret, type, hooks, - origName = camelCase( name ), - isCustomProp = rcustomProp.test( name ), - style = elem.style; - - // Make sure that we're working with the right name. We don't - // want to query the value if it is a CSS custom property - // since they are user-defined. - if ( !isCustomProp ) { - name = finalPropName( origName ); - } - - // Gets hook for the prefixed version, then unprefixed version - hooks = jQuery.cssHooks[ name ] || jQuery.cssHooks[ origName ]; - - // Check if we're setting a value - if ( value !== undefined ) { - type = typeof value; - - // Convert "+=" or "-=" to relative numbers (#7345) - if ( type === "string" && ( ret = rcssNum.exec( value ) ) && ret[ 1 ] ) { - value = adjustCSS( elem, name, ret ); - - // Fixes bug #9237 - type = "number"; - } - - // Make sure that null and NaN values aren't set (#7116) - if ( value == null || value !== value ) { - return; - } - - // If a number was passed in, add the unit (except for certain CSS properties) - // The isCustomProp check can be removed in jQuery 4.0 when we only auto-append - // "px" to a few hardcoded values. - if ( type === "number" && !isCustomProp ) { - value += ret && ret[ 3 ] || ( jQuery.cssNumber[ origName ] ? "" : "px" ); - } - - // background-* props affect original clone's values - if ( !support.clearCloneStyle && value === "" && name.indexOf( "background" ) === 0 ) { - style[ name ] = "inherit"; - } - - // If a hook was provided, use that value, otherwise just set the specified value - if ( !hooks || !( "set" in hooks ) || - ( value = hooks.set( elem, value, extra ) ) !== undefined ) { - - if ( isCustomProp ) { - style.setProperty( name, value ); - } else { - style[ name ] = value; - } - } - - } else { - - // If a hook was provided get the non-computed value from there - if ( hooks && "get" in hooks && - ( ret = hooks.get( elem, false, extra ) ) !== undefined ) { - - return ret; - } - - // Otherwise just get the value from the style object - return style[ name ]; - } - }, - - css: function( elem, name, extra, styles ) { - var val, num, hooks, - origName = camelCase( name ), - isCustomProp = rcustomProp.test( name ); - - // Make sure that we're working with the right name. We don't - // want to modify the value if it is a CSS custom property - // since they are user-defined. - if ( !isCustomProp ) { - name = finalPropName( origName ); - } - - // Try prefixed name followed by the unprefixed name - hooks = jQuery.cssHooks[ name ] || jQuery.cssHooks[ origName ]; - - // If a hook was provided get the computed value from there - if ( hooks && "get" in hooks ) { - val = hooks.get( elem, true, extra ); - } - - // Otherwise, if a way to get the computed value exists, use that - if ( val === undefined ) { - val = curCSS( elem, name, styles ); - } - - // Convert "normal" to computed value - if ( val === "normal" && name in cssNormalTransform ) { - val = cssNormalTransform[ name ]; - } - - // Make numeric if forced or a qualifier was provided and val looks numeric - if ( extra === "" || extra ) { - num = parseFloat( val ); - return extra === true || isFinite( num ) ? num || 0 : val; - } - - return val; - } -} ); - -jQuery.each( [ "height", "width" ], function( i, dimension ) { - jQuery.cssHooks[ dimension ] = { - get: function( elem, computed, extra ) { - if ( computed ) { - - // Certain elements can have dimension info if we invisibly show them - // but it must have a current display style that would benefit - return rdisplayswap.test( jQuery.css( elem, "display" ) ) && - - // Support: Safari 8+ - // Table columns in Safari have non-zero offsetWidth & zero - // getBoundingClientRect().width unless display is changed. - // Support: IE <=11 only - // Running getBoundingClientRect on a disconnected node - // in IE throws an error. - ( !elem.getClientRects().length || !elem.getBoundingClientRect().width ) ? - swap( elem, cssShow, function() { - return getWidthOrHeight( elem, dimension, extra ); - } ) : - getWidthOrHeight( elem, dimension, extra ); - } - }, - - set: function( elem, value, extra ) { - var matches, - styles = getStyles( elem ), - - // Only read styles.position if the test has a chance to fail - // to avoid forcing a reflow. - scrollboxSizeBuggy = !support.scrollboxSize() && - styles.position === "absolute", - - // To avoid forcing a reflow, only fetch boxSizing if we need it (gh-3991) - boxSizingNeeded = scrollboxSizeBuggy || extra, - isBorderBox = boxSizingNeeded && - jQuery.css( elem, "boxSizing", false, styles ) === "border-box", - subtract = extra ? - boxModelAdjustment( - elem, - dimension, - extra, - isBorderBox, - styles - ) : - 0; - - // Account for unreliable border-box dimensions by comparing offset* to computed and - // faking a content-box to get border and padding (gh-3699) - if ( isBorderBox && scrollboxSizeBuggy ) { - subtract -= Math.ceil( - elem[ "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ) ] - - parseFloat( styles[ dimension ] ) - - boxModelAdjustment( elem, dimension, "border", false, styles ) - - 0.5 - ); - } - - // Convert to pixels if value adjustment is needed - if ( subtract && ( matches = rcssNum.exec( value ) ) && - ( matches[ 3 ] || "px" ) !== "px" ) { - - elem.style[ dimension ] = value; - value = jQuery.css( elem, dimension ); - } - - return setPositiveNumber( elem, value, subtract ); - } - }; -} ); - -jQuery.cssHooks.marginLeft = addGetHookIf( support.reliableMarginLeft, - function( elem, computed ) { - if ( computed ) { - return ( parseFloat( curCSS( elem, "marginLeft" ) ) || - elem.getBoundingClientRect().left - - swap( elem, { marginLeft: 0 }, function() { - return elem.getBoundingClientRect().left; - } ) - ) + "px"; - } - } -); - -// These hooks are used by animate to expand properties -jQuery.each( { - margin: "", - padding: "", - border: "Width" -}, function( prefix, suffix ) { - jQuery.cssHooks[ prefix + suffix ] = { - expand: function( value ) { - var i = 0, - expanded = {}, - - // Assumes a single number if not a string - parts = typeof value === "string" ? value.split( " " ) : [ value ]; - - for ( ; i < 4; i++ ) { - expanded[ prefix + cssExpand[ i ] + suffix ] = - parts[ i ] || parts[ i - 2 ] || parts[ 0 ]; - } - - return expanded; - } - }; - - if ( prefix !== "margin" ) { - jQuery.cssHooks[ prefix + suffix ].set = setPositiveNumber; - } -} ); - -jQuery.fn.extend( { - css: function( name, value ) { - return access( this, function( elem, name, value ) { - var styles, len, - map = {}, - i = 0; - - if ( Array.isArray( name ) ) { - styles = getStyles( elem ); - len = name.length; - - for ( ; i < len; i++ ) { - map[ name[ i ] ] = jQuery.css( elem, name[ i ], false, styles ); - } - - return map; - } - - return value !== undefined ? - jQuery.style( elem, name, value ) : - jQuery.css( elem, name ); - }, name, value, arguments.length > 1 ); - } -} ); - - -function Tween( elem, options, prop, end, easing ) { - return new Tween.prototype.init( elem, options, prop, end, easing ); -} -jQuery.Tween = Tween; - -Tween.prototype = { - constructor: Tween, - init: function( elem, options, prop, end, easing, unit ) { - this.elem = elem; - this.prop = prop; - this.easing = easing || jQuery.easing._default; - this.options = options; - this.start = this.now = this.cur(); - this.end = end; - this.unit = unit || ( jQuery.cssNumber[ prop ] ? "" : "px" ); - }, - cur: function() { - var hooks = Tween.propHooks[ this.prop ]; - - return hooks && hooks.get ? - hooks.get( this ) : - Tween.propHooks._default.get( this ); - }, - run: function( percent ) { - var eased, - hooks = Tween.propHooks[ this.prop ]; - - if ( this.options.duration ) { - this.pos = eased = jQuery.easing[ this.easing ]( - percent, this.options.duration * percent, 0, 1, this.options.duration - ); - } else { - this.pos = eased = percent; - } - this.now = ( this.end - this.start ) * eased + this.start; - - if ( this.options.step ) { - this.options.step.call( this.elem, this.now, this ); - } - - if ( hooks && hooks.set ) { - hooks.set( this ); - } else { - Tween.propHooks._default.set( this ); - } - return this; - } -}; - -Tween.prototype.init.prototype = Tween.prototype; - -Tween.propHooks = { - _default: { - get: function( tween ) { - var result; - - // Use a property on the element directly when it is not a DOM element, - // or when there is no matching style property that exists. - if ( tween.elem.nodeType !== 1 || - tween.elem[ tween.prop ] != null && tween.elem.style[ tween.prop ] == null ) { - return tween.elem[ tween.prop ]; - } - - // Passing an empty string as a 3rd parameter to .css will automatically - // attempt a parseFloat and fallback to a string if the parse fails. - // Simple values such as "10px" are parsed to Float; - // complex values such as "rotate(1rad)" are returned as-is. - result = jQuery.css( tween.elem, tween.prop, "" ); - - // Empty strings, null, undefined and "auto" are converted to 0. - return !result || result === "auto" ? 0 : result; - }, - set: function( tween ) { - - // Use step hook for back compat. - // Use cssHook if its there. - // Use .style if available and use plain properties where available. - if ( jQuery.fx.step[ tween.prop ] ) { - jQuery.fx.step[ tween.prop ]( tween ); - } else if ( tween.elem.nodeType === 1 && ( - jQuery.cssHooks[ tween.prop ] || - tween.elem.style[ finalPropName( tween.prop ) ] != null ) ) { - jQuery.style( tween.elem, tween.prop, tween.now + tween.unit ); - } else { - tween.elem[ tween.prop ] = tween.now; - } - } - } -}; - -// Support: IE <=9 only -// Panic based approach to setting things on disconnected nodes -Tween.propHooks.scrollTop = Tween.propHooks.scrollLeft = { - set: function( tween ) { - if ( tween.elem.nodeType && tween.elem.parentNode ) { - tween.elem[ tween.prop ] = tween.now; - } - } -}; - -jQuery.easing = { - linear: function( p ) { - return p; - }, - swing: function( p ) { - return 0.5 - Math.cos( p * Math.PI ) / 2; - }, - _default: "swing" -}; - -jQuery.fx = Tween.prototype.init; - -// Back compat <1.8 extension point -jQuery.fx.step = {}; - - - - -var - fxNow, inProgress, - rfxtypes = /^(?:toggle|show|hide)$/, - rrun = /queueHooks$/; - -function schedule() { - if ( inProgress ) { - if ( document.hidden === false && window.requestAnimationFrame ) { - window.requestAnimationFrame( schedule ); - } else { - window.setTimeout( schedule, jQuery.fx.interval ); - } - - jQuery.fx.tick(); - } -} - -// Animations created synchronously will run synchronously -function createFxNow() { - window.setTimeout( function() { - fxNow = undefined; - } ); - return ( fxNow = Date.now() ); -} - -// Generate parameters to create a standard animation -function genFx( type, includeWidth ) { - var which, - i = 0, - attrs = { height: type }; - - // If we include width, step value is 1 to do all cssExpand values, - // otherwise step value is 2 to skip over Left and Right - includeWidth = includeWidth ? 1 : 0; - for ( ; i < 4; i += 2 - includeWidth ) { - which = cssExpand[ i ]; - attrs[ "margin" + which ] = attrs[ "padding" + which ] = type; - } - - if ( includeWidth ) { - attrs.opacity = attrs.width = type; - } - - return attrs; -} - -function createTween( value, prop, animation ) { - var tween, - collection = ( Animation.tweeners[ prop ] || [] ).concat( Animation.tweeners[ "*" ] ), - index = 0, - length = collection.length; - for ( ; index < length; index++ ) { - if ( ( tween = collection[ index ].call( animation, prop, value ) ) ) { - - // We're done with this property - return tween; - } - } -} - -function defaultPrefilter( elem, props, opts ) { - var prop, value, toggle, hooks, oldfire, propTween, restoreDisplay, display, - isBox = "width" in props || "height" in props, - anim = this, - orig = {}, - style = elem.style, - hidden = elem.nodeType && isHiddenWithinTree( elem ), - dataShow = dataPriv.get( elem, "fxshow" ); - - // Queue-skipping animations hijack the fx hooks - if ( !opts.queue ) { - hooks = jQuery._queueHooks( elem, "fx" ); - if ( hooks.unqueued == null ) { - hooks.unqueued = 0; - oldfire = hooks.empty.fire; - hooks.empty.fire = function() { - if ( !hooks.unqueued ) { - oldfire(); - } - }; - } - hooks.unqueued++; - - anim.always( function() { - - // Ensure the complete handler is called before this completes - anim.always( function() { - hooks.unqueued--; - if ( !jQuery.queue( elem, "fx" ).length ) { - hooks.empty.fire(); - } - } ); - } ); - } - - // Detect show/hide animations - for ( prop in props ) { - value = props[ prop ]; - if ( rfxtypes.test( value ) ) { - delete props[ prop ]; - toggle = toggle || value === "toggle"; - if ( value === ( hidden ? "hide" : "show" ) ) { - - // Pretend to be hidden if this is a "show" and - // there is still data from a stopped show/hide - if ( value === "show" && dataShow && dataShow[ prop ] !== undefined ) { - hidden = true; - - // Ignore all other no-op show/hide data - } else { - continue; - } - } - orig[ prop ] = dataShow && dataShow[ prop ] || jQuery.style( elem, prop ); - } - } - - // Bail out if this is a no-op like .hide().hide() - propTween = !jQuery.isEmptyObject( props ); - if ( !propTween && jQuery.isEmptyObject( orig ) ) { - return; - } - - // Restrict "overflow" and "display" styles during box animations - if ( isBox && elem.nodeType === 1 ) { - - // Support: IE <=9 - 11, Edge 12 - 15 - // Record all 3 overflow attributes because IE does not infer the shorthand - // from identically-valued overflowX and overflowY and Edge just mirrors - // the overflowX value there. - opts.overflow = [ style.overflow, style.overflowX, style.overflowY ]; - - // Identify a display type, preferring old show/hide data over the CSS cascade - restoreDisplay = dataShow && dataShow.display; - if ( restoreDisplay == null ) { - restoreDisplay = dataPriv.get( elem, "display" ); - } - display = jQuery.css( elem, "display" ); - if ( display === "none" ) { - if ( restoreDisplay ) { - display = restoreDisplay; - } else { - - // Get nonempty value(s) by temporarily forcing visibility - showHide( [ elem ], true ); - restoreDisplay = elem.style.display || restoreDisplay; - display = jQuery.css( elem, "display" ); - showHide( [ elem ] ); - } - } - - // Animate inline elements as inline-block - if ( display === "inline" || display === "inline-block" && restoreDisplay != null ) { - if ( jQuery.css( elem, "float" ) === "none" ) { - - // Restore the original display value at the end of pure show/hide animations - if ( !propTween ) { - anim.done( function() { - style.display = restoreDisplay; - } ); - if ( restoreDisplay == null ) { - display = style.display; - restoreDisplay = display === "none" ? "" : display; - } - } - style.display = "inline-block"; - } - } - } - - if ( opts.overflow ) { - style.overflow = "hidden"; - anim.always( function() { - style.overflow = opts.overflow[ 0 ]; - style.overflowX = opts.overflow[ 1 ]; - style.overflowY = opts.overflow[ 2 ]; - } ); - } - - // Implement show/hide animations - propTween = false; - for ( prop in orig ) { - - // General show/hide setup for this element animation - if ( !propTween ) { - if ( dataShow ) { - if ( "hidden" in dataShow ) { - hidden = dataShow.hidden; - } - } else { - dataShow = dataPriv.access( elem, "fxshow", { display: restoreDisplay } ); - } - - // Store hidden/visible for toggle so `.stop().toggle()` "reverses" - if ( toggle ) { - dataShow.hidden = !hidden; - } - - // Show elements before animating them - if ( hidden ) { - showHide( [ elem ], true ); - } - - /* eslint-disable no-loop-func */ - - anim.done( function() { - - /* eslint-enable no-loop-func */ - - // The final step of a "hide" animation is actually hiding the element - if ( !hidden ) { - showHide( [ elem ] ); - } - dataPriv.remove( elem, "fxshow" ); - for ( prop in orig ) { - jQuery.style( elem, prop, orig[ prop ] ); - } - } ); - } - - // Per-property setup - propTween = createTween( hidden ? dataShow[ prop ] : 0, prop, anim ); - if ( !( prop in dataShow ) ) { - dataShow[ prop ] = propTween.start; - if ( hidden ) { - propTween.end = propTween.start; - propTween.start = 0; - } - } - } -} - -function propFilter( props, specialEasing ) { - var index, name, easing, value, hooks; - - // camelCase, specialEasing and expand cssHook pass - for ( index in props ) { - name = camelCase( index ); - easing = specialEasing[ name ]; - value = props[ index ]; - if ( Array.isArray( value ) ) { - easing = value[ 1 ]; - value = props[ index ] = value[ 0 ]; - } - - if ( index !== name ) { - props[ name ] = value; - delete props[ index ]; - } - - hooks = jQuery.cssHooks[ name ]; - if ( hooks && "expand" in hooks ) { - value = hooks.expand( value ); - delete props[ name ]; - - // Not quite $.extend, this won't overwrite existing keys. - // Reusing 'index' because we have the correct "name" - for ( index in value ) { - if ( !( index in props ) ) { - props[ index ] = value[ index ]; - specialEasing[ index ] = easing; - } - } - } else { - specialEasing[ name ] = easing; - } - } -} - -function Animation( elem, properties, options ) { - var result, - stopped, - index = 0, - length = Animation.prefilters.length, - deferred = jQuery.Deferred().always( function() { - - // Don't match elem in the :animated selector - delete tick.elem; - } ), - tick = function() { - if ( stopped ) { - return false; - } - var currentTime = fxNow || createFxNow(), - remaining = Math.max( 0, animation.startTime + animation.duration - currentTime ), - - // Support: Android 2.3 only - // Archaic crash bug won't allow us to use `1 - ( 0.5 || 0 )` (#12497) - temp = remaining / animation.duration || 0, - percent = 1 - temp, - index = 0, - length = animation.tweens.length; - - for ( ; index < length; index++ ) { - animation.tweens[ index ].run( percent ); - } - - deferred.notifyWith( elem, [ animation, percent, remaining ] ); - - // If there's more to do, yield - if ( percent < 1 && length ) { - return remaining; - } - - // If this was an empty animation, synthesize a final progress notification - if ( !length ) { - deferred.notifyWith( elem, [ animation, 1, 0 ] ); - } - - // Resolve the animation and report its conclusion - deferred.resolveWith( elem, [ animation ] ); - return false; - }, - animation = deferred.promise( { - elem: elem, - props: jQuery.extend( {}, properties ), - opts: jQuery.extend( true, { - specialEasing: {}, - easing: jQuery.easing._default - }, options ), - originalProperties: properties, - originalOptions: options, - startTime: fxNow || createFxNow(), - duration: options.duration, - tweens: [], - createTween: function( prop, end ) { - var tween = jQuery.Tween( elem, animation.opts, prop, end, - animation.opts.specialEasing[ prop ] || animation.opts.easing ); - animation.tweens.push( tween ); - return tween; - }, - stop: function( gotoEnd ) { - var index = 0, - - // If we are going to the end, we want to run all the tweens - // otherwise we skip this part - length = gotoEnd ? animation.tweens.length : 0; - if ( stopped ) { - return this; - } - stopped = true; - for ( ; index < length; index++ ) { - animation.tweens[ index ].run( 1 ); - } - - // Resolve when we played the last frame; otherwise, reject - if ( gotoEnd ) { - deferred.notifyWith( elem, [ animation, 1, 0 ] ); - deferred.resolveWith( elem, [ animation, gotoEnd ] ); - } else { - deferred.rejectWith( elem, [ animation, gotoEnd ] ); - } - return this; - } - } ), - props = animation.props; - - propFilter( props, animation.opts.specialEasing ); - - for ( ; index < length; index++ ) { - result = Animation.prefilters[ index ].call( animation, elem, props, animation.opts ); - if ( result ) { - if ( isFunction( result.stop ) ) { - jQuery._queueHooks( animation.elem, animation.opts.queue ).stop = - result.stop.bind( result ); - } - return result; - } - } - - jQuery.map( props, createTween, animation ); - - if ( isFunction( animation.opts.start ) ) { - animation.opts.start.call( elem, animation ); - } - - // Attach callbacks from options - animation - .progress( animation.opts.progress ) - .done( animation.opts.done, animation.opts.complete ) - .fail( animation.opts.fail ) - .always( animation.opts.always ); - - jQuery.fx.timer( - jQuery.extend( tick, { - elem: elem, - anim: animation, - queue: animation.opts.queue - } ) - ); - - return animation; -} - -jQuery.Animation = jQuery.extend( Animation, { - - tweeners: { - "*": [ function( prop, value ) { - var tween = this.createTween( prop, value ); - adjustCSS( tween.elem, prop, rcssNum.exec( value ), tween ); - return tween; - } ] - }, - - tweener: function( props, callback ) { - if ( isFunction( props ) ) { - callback = props; - props = [ "*" ]; - } else { - props = props.match( rnothtmlwhite ); - } - - var prop, - index = 0, - length = props.length; - - for ( ; index < length; index++ ) { - prop = props[ index ]; - Animation.tweeners[ prop ] = Animation.tweeners[ prop ] || []; - Animation.tweeners[ prop ].unshift( callback ); - } - }, - - prefilters: [ defaultPrefilter ], - - prefilter: function( callback, prepend ) { - if ( prepend ) { - Animation.prefilters.unshift( callback ); - } else { - Animation.prefilters.push( callback ); - } - } -} ); - -jQuery.speed = function( speed, easing, fn ) { - var opt = speed && typeof speed === "object" ? jQuery.extend( {}, speed ) : { - complete: fn || !fn && easing || - isFunction( speed ) && speed, - duration: speed, - easing: fn && easing || easing && !isFunction( easing ) && easing - }; - - // Go to the end state if fx are off - if ( jQuery.fx.off ) { - opt.duration = 0; - - } else { - if ( typeof opt.duration !== "number" ) { - if ( opt.duration in jQuery.fx.speeds ) { - opt.duration = jQuery.fx.speeds[ opt.duration ]; - - } else { - opt.duration = jQuery.fx.speeds._default; - } - } - } - - // Normalize opt.queue - true/undefined/null -> "fx" - if ( opt.queue == null || opt.queue === true ) { - opt.queue = "fx"; - } - - // Queueing - opt.old = opt.complete; - - opt.complete = function() { - if ( isFunction( opt.old ) ) { - opt.old.call( this ); - } - - if ( opt.queue ) { - jQuery.dequeue( this, opt.queue ); - } - }; - - return opt; -}; - -jQuery.fn.extend( { - fadeTo: function( speed, to, easing, callback ) { - - // Show any hidden elements after setting opacity to 0 - return this.filter( isHiddenWithinTree ).css( "opacity", 0 ).show() - - // Animate to the value specified - .end().animate( { opacity: to }, speed, easing, callback ); - }, - animate: function( prop, speed, easing, callback ) { - var empty = jQuery.isEmptyObject( prop ), - optall = jQuery.speed( speed, easing, callback ), - doAnimation = function() { - - // Operate on a copy of prop so per-property easing won't be lost - var anim = Animation( this, jQuery.extend( {}, prop ), optall ); - - // Empty animations, or finishing resolves immediately - if ( empty || dataPriv.get( this, "finish" ) ) { - anim.stop( true ); - } - }; - doAnimation.finish = doAnimation; - - return empty || optall.queue === false ? - this.each( doAnimation ) : - this.queue( optall.queue, doAnimation ); - }, - stop: function( type, clearQueue, gotoEnd ) { - var stopQueue = function( hooks ) { - var stop = hooks.stop; - delete hooks.stop; - stop( gotoEnd ); - }; - - if ( typeof type !== "string" ) { - gotoEnd = clearQueue; - clearQueue = type; - type = undefined; - } - if ( clearQueue && type !== false ) { - this.queue( type || "fx", [] ); - } - - return this.each( function() { - var dequeue = true, - index = type != null && type + "queueHooks", - timers = jQuery.timers, - data = dataPriv.get( this ); - - if ( index ) { - if ( data[ index ] && data[ index ].stop ) { - stopQueue( data[ index ] ); - } - } else { - for ( index in data ) { - if ( data[ index ] && data[ index ].stop && rrun.test( index ) ) { - stopQueue( data[ index ] ); - } - } - } - - for ( index = timers.length; index--; ) { - if ( timers[ index ].elem === this && - ( type == null || timers[ index ].queue === type ) ) { - - timers[ index ].anim.stop( gotoEnd ); - dequeue = false; - timers.splice( index, 1 ); - } - } - - // Start the next in the queue if the last step wasn't forced. - // Timers currently will call their complete callbacks, which - // will dequeue but only if they were gotoEnd. - if ( dequeue || !gotoEnd ) { - jQuery.dequeue( this, type ); - } - } ); - }, - finish: function( type ) { - if ( type !== false ) { - type = type || "fx"; - } - return this.each( function() { - var index, - data = dataPriv.get( this ), - queue = data[ type + "queue" ], - hooks = data[ type + "queueHooks" ], - timers = jQuery.timers, - length = queue ? queue.length : 0; - - // Enable finishing flag on private data - data.finish = true; - - // Empty the queue first - jQuery.queue( this, type, [] ); - - if ( hooks && hooks.stop ) { - hooks.stop.call( this, true ); - } - - // Look for any active animations, and finish them - for ( index = timers.length; index--; ) { - if ( timers[ index ].elem === this && timers[ index ].queue === type ) { - timers[ index ].anim.stop( true ); - timers.splice( index, 1 ); - } - } - - // Look for any animations in the old queue and finish them - for ( index = 0; index < length; index++ ) { - if ( queue[ index ] && queue[ index ].finish ) { - queue[ index ].finish.call( this ); - } - } - - // Turn off finishing flag - delete data.finish; - } ); - } -} ); - -jQuery.each( [ "toggle", "show", "hide" ], function( i, name ) { - var cssFn = jQuery.fn[ name ]; - jQuery.fn[ name ] = function( speed, easing, callback ) { - return speed == null || typeof speed === "boolean" ? - cssFn.apply( this, arguments ) : - this.animate( genFx( name, true ), speed, easing, callback ); - }; -} ); - -// Generate shortcuts for custom animations -jQuery.each( { - slideDown: genFx( "show" ), - slideUp: genFx( "hide" ), - slideToggle: genFx( "toggle" ), - fadeIn: { opacity: "show" }, - fadeOut: { opacity: "hide" }, - fadeToggle: { opacity: "toggle" } -}, function( name, props ) { - jQuery.fn[ name ] = function( speed, easing, callback ) { - return this.animate( props, speed, easing, callback ); - }; -} ); - -jQuery.timers = []; -jQuery.fx.tick = function() { - var timer, - i = 0, - timers = jQuery.timers; - - fxNow = Date.now(); - - for ( ; i < timers.length; i++ ) { - timer = timers[ i ]; - - // Run the timer and safely remove it when done (allowing for external removal) - if ( !timer() && timers[ i ] === timer ) { - timers.splice( i--, 1 ); - } - } - - if ( !timers.length ) { - jQuery.fx.stop(); - } - fxNow = undefined; -}; - -jQuery.fx.timer = function( timer ) { - jQuery.timers.push( timer ); - jQuery.fx.start(); -}; - -jQuery.fx.interval = 13; -jQuery.fx.start = function() { - if ( inProgress ) { - return; - } - - inProgress = true; - schedule(); -}; - -jQuery.fx.stop = function() { - inProgress = null; -}; - -jQuery.fx.speeds = { - slow: 600, - fast: 200, - - // Default speed - _default: 400 -}; - - -// Based off of the plugin by Clint Helfers, with permission. -// https://web.archive.org/web/20100324014747/http://blindsignals.com/index.php/2009/07/jquery-delay/ -jQuery.fn.delay = function( time, type ) { - time = jQuery.fx ? jQuery.fx.speeds[ time ] || time : time; - type = type || "fx"; - - return this.queue( type, function( next, hooks ) { - var timeout = window.setTimeout( next, time ); - hooks.stop = function() { - window.clearTimeout( timeout ); - }; - } ); -}; - - -( function() { - var input = document.createElement( "input" ), - select = document.createElement( "select" ), - opt = select.appendChild( document.createElement( "option" ) ); - - input.type = "checkbox"; - - // Support: Android <=4.3 only - // Default value for a checkbox should be "on" - support.checkOn = input.value !== ""; - - // Support: IE <=11 only - // Must access selectedIndex to make default options select - support.optSelected = opt.selected; - - // Support: IE <=11 only - // An input loses its value after becoming a radio - input = document.createElement( "input" ); - input.value = "t"; - input.type = "radio"; - support.radioValue = input.value === "t"; -} )(); - - -var boolHook, - attrHandle = jQuery.expr.attrHandle; - -jQuery.fn.extend( { - attr: function( name, value ) { - return access( this, jQuery.attr, name, value, arguments.length > 1 ); - }, - - removeAttr: function( name ) { - return this.each( function() { - jQuery.removeAttr( this, name ); - } ); - } -} ); - -jQuery.extend( { - attr: function( elem, name, value ) { - var ret, hooks, - nType = elem.nodeType; - - // Don't get/set attributes on text, comment and attribute nodes - if ( nType === 3 || nType === 8 || nType === 2 ) { - return; - } - - // Fallback to prop when attributes are not supported - if ( typeof elem.getAttribute === "undefined" ) { - return jQuery.prop( elem, name, value ); - } - - // Attribute hooks are determined by the lowercase version - // Grab necessary hook if one is defined - if ( nType !== 1 || !jQuery.isXMLDoc( elem ) ) { - hooks = jQuery.attrHooks[ name.toLowerCase() ] || - ( jQuery.expr.match.bool.test( name ) ? boolHook : undefined ); - } - - if ( value !== undefined ) { - if ( value === null ) { - jQuery.removeAttr( elem, name ); - return; - } - - if ( hooks && "set" in hooks && - ( ret = hooks.set( elem, value, name ) ) !== undefined ) { - return ret; - } - - elem.setAttribute( name, value + "" ); - return value; - } - - if ( hooks && "get" in hooks && ( ret = hooks.get( elem, name ) ) !== null ) { - return ret; - } - - ret = jQuery.find.attr( elem, name ); - - // Non-existent attributes return null, we normalize to undefined - return ret == null ? undefined : ret; - }, - - attrHooks: { - type: { - set: function( elem, value ) { - if ( !support.radioValue && value === "radio" && - nodeName( elem, "input" ) ) { - var val = elem.value; - elem.setAttribute( "type", value ); - if ( val ) { - elem.value = val; - } - return value; - } - } - } - }, - - removeAttr: function( elem, value ) { - var name, - i = 0, - - // Attribute names can contain non-HTML whitespace characters - // https://html.spec.whatwg.org/multipage/syntax.html#attributes-2 - attrNames = value && value.match( rnothtmlwhite ); - - if ( attrNames && elem.nodeType === 1 ) { - while ( ( name = attrNames[ i++ ] ) ) { - elem.removeAttribute( name ); - } - } - } -} ); - -// Hooks for boolean attributes -boolHook = { - set: function( elem, value, name ) { - if ( value === false ) { - - // Remove boolean attributes when set to false - jQuery.removeAttr( elem, name ); - } else { - elem.setAttribute( name, name ); - } - return name; - } -}; - -jQuery.each( jQuery.expr.match.bool.source.match( /\w+/g ), function( i, name ) { - var getter = attrHandle[ name ] || jQuery.find.attr; - - attrHandle[ name ] = function( elem, name, isXML ) { - var ret, handle, - lowercaseName = name.toLowerCase(); - - if ( !isXML ) { - - // Avoid an infinite loop by temporarily removing this function from the getter - handle = attrHandle[ lowercaseName ]; - attrHandle[ lowercaseName ] = ret; - ret = getter( elem, name, isXML ) != null ? - lowercaseName : - null; - attrHandle[ lowercaseName ] = handle; - } - return ret; - }; -} ); - - - - -var rfocusable = /^(?:input|select|textarea|button)$/i, - rclickable = /^(?:a|area)$/i; - -jQuery.fn.extend( { - prop: function( name, value ) { - return access( this, jQuery.prop, name, value, arguments.length > 1 ); - }, - - removeProp: function( name ) { - return this.each( function() { - delete this[ jQuery.propFix[ name ] || name ]; - } ); - } -} ); - -jQuery.extend( { - prop: function( elem, name, value ) { - var ret, hooks, - nType = elem.nodeType; - - // Don't get/set properties on text, comment and attribute nodes - if ( nType === 3 || nType === 8 || nType === 2 ) { - return; - } - - if ( nType !== 1 || !jQuery.isXMLDoc( elem ) ) { - - // Fix name and attach hooks - name = jQuery.propFix[ name ] || name; - hooks = jQuery.propHooks[ name ]; - } - - if ( value !== undefined ) { - if ( hooks && "set" in hooks && - ( ret = hooks.set( elem, value, name ) ) !== undefined ) { - return ret; - } - - return ( elem[ name ] = value ); - } - - if ( hooks && "get" in hooks && ( ret = hooks.get( elem, name ) ) !== null ) { - return ret; - } - - return elem[ name ]; - }, - - propHooks: { - tabIndex: { - get: function( elem ) { - - // Support: IE <=9 - 11 only - // elem.tabIndex doesn't always return the - // correct value when it hasn't been explicitly set - // https://web.archive.org/web/20141116233347/http://fluidproject.org/blog/2008/01/09/getting-setting-and-removing-tabindex-values-with-javascript/ - // Use proper attribute retrieval(#12072) - var tabindex = jQuery.find.attr( elem, "tabindex" ); - - if ( tabindex ) { - return parseInt( tabindex, 10 ); - } - - if ( - rfocusable.test( elem.nodeName ) || - rclickable.test( elem.nodeName ) && - elem.href - ) { - return 0; - } - - return -1; - } - } - }, - - propFix: { - "for": "htmlFor", - "class": "className" - } -} ); - -// Support: IE <=11 only -// Accessing the selectedIndex property -// forces the browser to respect setting selected -// on the option -// The getter ensures a default option is selected -// when in an optgroup -// eslint rule "no-unused-expressions" is disabled for this code -// since it considers such accessions noop -if ( !support.optSelected ) { - jQuery.propHooks.selected = { - get: function( elem ) { - - /* eslint no-unused-expressions: "off" */ - - var parent = elem.parentNode; - if ( parent && parent.parentNode ) { - parent.parentNode.selectedIndex; - } - return null; - }, - set: function( elem ) { - - /* eslint no-unused-expressions: "off" */ - - var parent = elem.parentNode; - if ( parent ) { - parent.selectedIndex; - - if ( parent.parentNode ) { - parent.parentNode.selectedIndex; - } - } - } - }; -} - -jQuery.each( [ - "tabIndex", - "readOnly", - "maxLength", - "cellSpacing", - "cellPadding", - "rowSpan", - "colSpan", - "useMap", - "frameBorder", - "contentEditable" -], function() { - jQuery.propFix[ this.toLowerCase() ] = this; -} ); - - - - - // Strip and collapse whitespace according to HTML spec - // https://infra.spec.whatwg.org/#strip-and-collapse-ascii-whitespace - function stripAndCollapse( value ) { - var tokens = value.match( rnothtmlwhite ) || []; - return tokens.join( " " ); - } - - -function getClass( elem ) { - return elem.getAttribute && elem.getAttribute( "class" ) || ""; -} - -function classesToArray( value ) { - if ( Array.isArray( value ) ) { - return value; - } - if ( typeof value === "string" ) { - return value.match( rnothtmlwhite ) || []; - } - return []; -} - -jQuery.fn.extend( { - addClass: function( value ) { - var classes, elem, cur, curValue, clazz, j, finalValue, - i = 0; - - if ( isFunction( value ) ) { - return this.each( function( j ) { - jQuery( this ).addClass( value.call( this, j, getClass( this ) ) ); - } ); - } - - classes = classesToArray( value ); - - if ( classes.length ) { - while ( ( elem = this[ i++ ] ) ) { - curValue = getClass( elem ); - cur = elem.nodeType === 1 && ( " " + stripAndCollapse( curValue ) + " " ); - - if ( cur ) { - j = 0; - while ( ( clazz = classes[ j++ ] ) ) { - if ( cur.indexOf( " " + clazz + " " ) < 0 ) { - cur += clazz + " "; - } - } - - // Only assign if different to avoid unneeded rendering. - finalValue = stripAndCollapse( cur ); - if ( curValue !== finalValue ) { - elem.setAttribute( "class", finalValue ); - } - } - } - } - - return this; - }, - - removeClass: function( value ) { - var classes, elem, cur, curValue, clazz, j, finalValue, - i = 0; - - if ( isFunction( value ) ) { - return this.each( function( j ) { - jQuery( this ).removeClass( value.call( this, j, getClass( this ) ) ); - } ); - } - - if ( !arguments.length ) { - return this.attr( "class", "" ); - } - - classes = classesToArray( value ); - - if ( classes.length ) { - while ( ( elem = this[ i++ ] ) ) { - curValue = getClass( elem ); - - // This expression is here for better compressibility (see addClass) - cur = elem.nodeType === 1 && ( " " + stripAndCollapse( curValue ) + " " ); - - if ( cur ) { - j = 0; - while ( ( clazz = classes[ j++ ] ) ) { - - // Remove *all* instances - while ( cur.indexOf( " " + clazz + " " ) > -1 ) { - cur = cur.replace( " " + clazz + " ", " " ); - } - } - - // Only assign if different to avoid unneeded rendering. - finalValue = stripAndCollapse( cur ); - if ( curValue !== finalValue ) { - elem.setAttribute( "class", finalValue ); - } - } - } - } - - return this; - }, - - toggleClass: function( value, stateVal ) { - var type = typeof value, - isValidValue = type === "string" || Array.isArray( value ); - - if ( typeof stateVal === "boolean" && isValidValue ) { - return stateVal ? this.addClass( value ) : this.removeClass( value ); - } - - if ( isFunction( value ) ) { - return this.each( function( i ) { - jQuery( this ).toggleClass( - value.call( this, i, getClass( this ), stateVal ), - stateVal - ); - } ); - } - - return this.each( function() { - var className, i, self, classNames; - - if ( isValidValue ) { - - // Toggle individual class names - i = 0; - self = jQuery( this ); - classNames = classesToArray( value ); - - while ( ( className = classNames[ i++ ] ) ) { - - // Check each className given, space separated list - if ( self.hasClass( className ) ) { - self.removeClass( className ); - } else { - self.addClass( className ); - } - } - - // Toggle whole class name - } else if ( value === undefined || type === "boolean" ) { - className = getClass( this ); - if ( className ) { - - // Store className if set - dataPriv.set( this, "__className__", className ); - } - - // If the element has a class name or if we're passed `false`, - // then remove the whole classname (if there was one, the above saved it). - // Otherwise bring back whatever was previously saved (if anything), - // falling back to the empty string if nothing was stored. - if ( this.setAttribute ) { - this.setAttribute( "class", - className || value === false ? - "" : - dataPriv.get( this, "__className__" ) || "" - ); - } - } - } ); - }, - - hasClass: function( selector ) { - var className, elem, - i = 0; - - className = " " + selector + " "; - while ( ( elem = this[ i++ ] ) ) { - if ( elem.nodeType === 1 && - ( " " + stripAndCollapse( getClass( elem ) ) + " " ).indexOf( className ) > -1 ) { - return true; - } - } - - return false; - } -} ); - - - - -var rreturn = /\r/g; - -jQuery.fn.extend( { - val: function( value ) { - var hooks, ret, valueIsFunction, - elem = this[ 0 ]; - - if ( !arguments.length ) { - if ( elem ) { - hooks = jQuery.valHooks[ elem.type ] || - jQuery.valHooks[ elem.nodeName.toLowerCase() ]; - - if ( hooks && - "get" in hooks && - ( ret = hooks.get( elem, "value" ) ) !== undefined - ) { - return ret; - } - - ret = elem.value; - - // Handle most common string cases - if ( typeof ret === "string" ) { - return ret.replace( rreturn, "" ); - } - - // Handle cases where value is null/undef or number - return ret == null ? "" : ret; - } - - return; - } - - valueIsFunction = isFunction( value ); - - return this.each( function( i ) { - var val; - - if ( this.nodeType !== 1 ) { - return; - } - - if ( valueIsFunction ) { - val = value.call( this, i, jQuery( this ).val() ); - } else { - val = value; - } - - // Treat null/undefined as ""; convert numbers to string - if ( val == null ) { - val = ""; - - } else if ( typeof val === "number" ) { - val += ""; - - } else if ( Array.isArray( val ) ) { - val = jQuery.map( val, function( value ) { - return value == null ? "" : value + ""; - } ); - } - - hooks = jQuery.valHooks[ this.type ] || jQuery.valHooks[ this.nodeName.toLowerCase() ]; - - // If set returns undefined, fall back to normal setting - if ( !hooks || !( "set" in hooks ) || hooks.set( this, val, "value" ) === undefined ) { - this.value = val; - } - } ); - } -} ); - -jQuery.extend( { - valHooks: { - option: { - get: function( elem ) { - - var val = jQuery.find.attr( elem, "value" ); - return val != null ? - val : - - // Support: IE <=10 - 11 only - // option.text throws exceptions (#14686, #14858) - // Strip and collapse whitespace - // https://html.spec.whatwg.org/#strip-and-collapse-whitespace - stripAndCollapse( jQuery.text( elem ) ); - } - }, - select: { - get: function( elem ) { - var value, option, i, - options = elem.options, - index = elem.selectedIndex, - one = elem.type === "select-one", - values = one ? null : [], - max = one ? index + 1 : options.length; - - if ( index < 0 ) { - i = max; - - } else { - i = one ? index : 0; - } - - // Loop through all the selected options - for ( ; i < max; i++ ) { - option = options[ i ]; - - // Support: IE <=9 only - // IE8-9 doesn't update selected after form reset (#2551) - if ( ( option.selected || i === index ) && - - // Don't return options that are disabled or in a disabled optgroup - !option.disabled && - ( !option.parentNode.disabled || - !nodeName( option.parentNode, "optgroup" ) ) ) { - - // Get the specific value for the option - value = jQuery( option ).val(); - - // We don't need an array for one selects - if ( one ) { - return value; - } - - // Multi-Selects return an array - values.push( value ); - } - } - - return values; - }, - - set: function( elem, value ) { - var optionSet, option, - options = elem.options, - values = jQuery.makeArray( value ), - i = options.length; - - while ( i-- ) { - option = options[ i ]; - - /* eslint-disable no-cond-assign */ - - if ( option.selected = - jQuery.inArray( jQuery.valHooks.option.get( option ), values ) > -1 - ) { - optionSet = true; - } - - /* eslint-enable no-cond-assign */ - } - - // Force browsers to behave consistently when non-matching value is set - if ( !optionSet ) { - elem.selectedIndex = -1; - } - return values; - } - } - } -} ); - -// Radios and checkboxes getter/setter -jQuery.each( [ "radio", "checkbox" ], function() { - jQuery.valHooks[ this ] = { - set: function( elem, value ) { - if ( Array.isArray( value ) ) { - return ( elem.checked = jQuery.inArray( jQuery( elem ).val(), value ) > -1 ); - } - } - }; - if ( !support.checkOn ) { - jQuery.valHooks[ this ].get = function( elem ) { - return elem.getAttribute( "value" ) === null ? "on" : elem.value; - }; - } -} ); - - - - -// Return jQuery for attributes-only inclusion - - -support.focusin = "onfocusin" in window; - - -var rfocusMorph = /^(?:focusinfocus|focusoutblur)$/, - stopPropagationCallback = function( e ) { - e.stopPropagation(); - }; - -jQuery.extend( jQuery.event, { - - trigger: function( event, data, elem, onlyHandlers ) { - - var i, cur, tmp, bubbleType, ontype, handle, special, lastElement, - eventPath = [ elem || document ], - type = hasOwn.call( event, "type" ) ? event.type : event, - namespaces = hasOwn.call( event, "namespace" ) ? event.namespace.split( "." ) : []; - - cur = lastElement = tmp = elem = elem || document; - - // Don't do events on text and comment nodes - if ( elem.nodeType === 3 || elem.nodeType === 8 ) { - return; - } - - // focus/blur morphs to focusin/out; ensure we're not firing them right now - if ( rfocusMorph.test( type + jQuery.event.triggered ) ) { - return; - } - - if ( type.indexOf( "." ) > -1 ) { - - // Namespaced trigger; create a regexp to match event type in handle() - namespaces = type.split( "." ); - type = namespaces.shift(); - namespaces.sort(); - } - ontype = type.indexOf( ":" ) < 0 && "on" + type; - - // Caller can pass in a jQuery.Event object, Object, or just an event type string - event = event[ jQuery.expando ] ? - event : - new jQuery.Event( type, typeof event === "object" && event ); - - // Trigger bitmask: & 1 for native handlers; & 2 for jQuery (always true) - event.isTrigger = onlyHandlers ? 2 : 3; - event.namespace = namespaces.join( "." ); - event.rnamespace = event.namespace ? - new RegExp( "(^|\\.)" + namespaces.join( "\\.(?:.*\\.|)" ) + "(\\.|$)" ) : - null; - - // Clean up the event in case it is being reused - event.result = undefined; - if ( !event.target ) { - event.target = elem; - } - - // Clone any incoming data and prepend the event, creating the handler arg list - data = data == null ? - [ event ] : - jQuery.makeArray( data, [ event ] ); - - // Allow special events to draw outside the lines - special = jQuery.event.special[ type ] || {}; - if ( !onlyHandlers && special.trigger && special.trigger.apply( elem, data ) === false ) { - return; - } - - // Determine event propagation path in advance, per W3C events spec (#9951) - // Bubble up to document, then to window; watch for a global ownerDocument var (#9724) - if ( !onlyHandlers && !special.noBubble && !isWindow( elem ) ) { - - bubbleType = special.delegateType || type; - if ( !rfocusMorph.test( bubbleType + type ) ) { - cur = cur.parentNode; - } - for ( ; cur; cur = cur.parentNode ) { - eventPath.push( cur ); - tmp = cur; - } - - // Only add window if we got to document (e.g., not plain obj or detached DOM) - if ( tmp === ( elem.ownerDocument || document ) ) { - eventPath.push( tmp.defaultView || tmp.parentWindow || window ); - } - } - - // Fire handlers on the event path - i = 0; - while ( ( cur = eventPath[ i++ ] ) && !event.isPropagationStopped() ) { - lastElement = cur; - event.type = i > 1 ? - bubbleType : - special.bindType || type; - - // jQuery handler - handle = ( dataPriv.get( cur, "events" ) || {} )[ event.type ] && - dataPriv.get( cur, "handle" ); - if ( handle ) { - handle.apply( cur, data ); - } - - // Native handler - handle = ontype && cur[ ontype ]; - if ( handle && handle.apply && acceptData( cur ) ) { - event.result = handle.apply( cur, data ); - if ( event.result === false ) { - event.preventDefault(); - } - } - } - event.type = type; - - // If nobody prevented the default action, do it now - if ( !onlyHandlers && !event.isDefaultPrevented() ) { - - if ( ( !special._default || - special._default.apply( eventPath.pop(), data ) === false ) && - acceptData( elem ) ) { - - // Call a native DOM method on the target with the same name as the event. - // Don't do default actions on window, that's where global variables be (#6170) - if ( ontype && isFunction( elem[ type ] ) && !isWindow( elem ) ) { - - // Don't re-trigger an onFOO event when we call its FOO() method - tmp = elem[ ontype ]; - - if ( tmp ) { - elem[ ontype ] = null; - } - - // Prevent re-triggering of the same event, since we already bubbled it above - jQuery.event.triggered = type; - - if ( event.isPropagationStopped() ) { - lastElement.addEventListener( type, stopPropagationCallback ); - } - - elem[ type ](); - - if ( event.isPropagationStopped() ) { - lastElement.removeEventListener( type, stopPropagationCallback ); - } - - jQuery.event.triggered = undefined; - - if ( tmp ) { - elem[ ontype ] = tmp; - } - } - } - } - - return event.result; - }, - - // Piggyback on a donor event to simulate a different one - // Used only for `focus(in | out)` events - simulate: function( type, elem, event ) { - var e = jQuery.extend( - new jQuery.Event(), - event, - { - type: type, - isSimulated: true - } - ); - - jQuery.event.trigger( e, null, elem ); - } - -} ); - -jQuery.fn.extend( { - - trigger: function( type, data ) { - return this.each( function() { - jQuery.event.trigger( type, data, this ); - } ); - }, - triggerHandler: function( type, data ) { - var elem = this[ 0 ]; - if ( elem ) { - return jQuery.event.trigger( type, data, elem, true ); - } - } -} ); - - -// Support: Firefox <=44 -// Firefox doesn't have focus(in | out) events -// Related ticket - https://bugzilla.mozilla.org/show_bug.cgi?id=687787 -// -// Support: Chrome <=48 - 49, Safari <=9.0 - 9.1 -// focus(in | out) events fire after focus & blur events, -// which is spec violation - http://www.w3.org/TR/DOM-Level-3-Events/#events-focusevent-event-order -// Related ticket - https://bugs.chromium.org/p/chromium/issues/detail?id=449857 -if ( !support.focusin ) { - jQuery.each( { focus: "focusin", blur: "focusout" }, function( orig, fix ) { - - // Attach a single capturing handler on the document while someone wants focusin/focusout - var handler = function( event ) { - jQuery.event.simulate( fix, event.target, jQuery.event.fix( event ) ); - }; - - jQuery.event.special[ fix ] = { - setup: function() { - var doc = this.ownerDocument || this, - attaches = dataPriv.access( doc, fix ); - - if ( !attaches ) { - doc.addEventListener( orig, handler, true ); - } - dataPriv.access( doc, fix, ( attaches || 0 ) + 1 ); - }, - teardown: function() { - var doc = this.ownerDocument || this, - attaches = dataPriv.access( doc, fix ) - 1; - - if ( !attaches ) { - doc.removeEventListener( orig, handler, true ); - dataPriv.remove( doc, fix ); - - } else { - dataPriv.access( doc, fix, attaches ); - } - } - }; - } ); -} -var location = window.location; - -var nonce = Date.now(); - -var rquery = ( /\?/ ); - - - -// Cross-browser xml parsing -jQuery.parseXML = function( data ) { - var xml; - if ( !data || typeof data !== "string" ) { - return null; - } - - // Support: IE 9 - 11 only - // IE throws on parseFromString with invalid input. - try { - xml = ( new window.DOMParser() ).parseFromString( data, "text/xml" ); - } catch ( e ) { - xml = undefined; - } - - if ( !xml || xml.getElementsByTagName( "parsererror" ).length ) { - jQuery.error( "Invalid XML: " + data ); - } - return xml; -}; - - -var - rbracket = /\[\]$/, - rCRLF = /\r?\n/g, - rsubmitterTypes = /^(?:submit|button|image|reset|file)$/i, - rsubmittable = /^(?:input|select|textarea|keygen)/i; - -function buildParams( prefix, obj, traditional, add ) { - var name; - - if ( Array.isArray( obj ) ) { - - // Serialize array item. - jQuery.each( obj, function( i, v ) { - if ( traditional || rbracket.test( prefix ) ) { - - // Treat each array item as a scalar. - add( prefix, v ); - - } else { - - // Item is non-scalar (array or object), encode its numeric index. - buildParams( - prefix + "[" + ( typeof v === "object" && v != null ? i : "" ) + "]", - v, - traditional, - add - ); - } - } ); - - } else if ( !traditional && toType( obj ) === "object" ) { - - // Serialize object item. - for ( name in obj ) { - buildParams( prefix + "[" + name + "]", obj[ name ], traditional, add ); - } - - } else { - - // Serialize scalar item. - add( prefix, obj ); - } -} - -// Serialize an array of form elements or a set of -// key/values into a query string -jQuery.param = function( a, traditional ) { - var prefix, - s = [], - add = function( key, valueOrFunction ) { - - // If value is a function, invoke it and use its return value - var value = isFunction( valueOrFunction ) ? - valueOrFunction() : - valueOrFunction; - - s[ s.length ] = encodeURIComponent( key ) + "=" + - encodeURIComponent( value == null ? "" : value ); - }; - - if ( a == null ) { - return ""; - } - - // If an array was passed in, assume that it is an array of form elements. - if ( Array.isArray( a ) || ( a.jquery && !jQuery.isPlainObject( a ) ) ) { - - // Serialize the form elements - jQuery.each( a, function() { - add( this.name, this.value ); - } ); - - } else { - - // If traditional, encode the "old" way (the way 1.3.2 or older - // did it), otherwise encode params recursively. - for ( prefix in a ) { - buildParams( prefix, a[ prefix ], traditional, add ); - } - } - - // Return the resulting serialization - return s.join( "&" ); -}; - -jQuery.fn.extend( { - serialize: function() { - return jQuery.param( this.serializeArray() ); - }, - serializeArray: function() { - return this.map( function() { - - // Can add propHook for "elements" to filter or add form elements - var elements = jQuery.prop( this, "elements" ); - return elements ? jQuery.makeArray( elements ) : this; - } ) - .filter( function() { - var type = this.type; - - // Use .is( ":disabled" ) so that fieldset[disabled] works - return this.name && !jQuery( this ).is( ":disabled" ) && - rsubmittable.test( this.nodeName ) && !rsubmitterTypes.test( type ) && - ( this.checked || !rcheckableType.test( type ) ); - } ) - .map( function( i, elem ) { - var val = jQuery( this ).val(); - - if ( val == null ) { - return null; - } - - if ( Array.isArray( val ) ) { - return jQuery.map( val, function( val ) { - return { name: elem.name, value: val.replace( rCRLF, "\r\n" ) }; - } ); - } - - return { name: elem.name, value: val.replace( rCRLF, "\r\n" ) }; - } ).get(); - } -} ); - - -var - r20 = /%20/g, - rhash = /#.*$/, - rantiCache = /([?&])_=[^&]*/, - rheaders = /^(.*?):[ \t]*([^\r\n]*)$/mg, - - // #7653, #8125, #8152: local protocol detection - rlocalProtocol = /^(?:about|app|app-storage|.+-extension|file|res|widget):$/, - rnoContent = /^(?:GET|HEAD)$/, - rprotocol = /^\/\//, - - /* Prefilters - * 1) They are useful to introduce custom dataTypes (see ajax/jsonp.js for an example) - * 2) These are called: - * - BEFORE asking for a transport - * - AFTER param serialization (s.data is a string if s.processData is true) - * 3) key is the dataType - * 4) the catchall symbol "*" can be used - * 5) execution will start with transport dataType and THEN continue down to "*" if needed - */ - prefilters = {}, - - /* Transports bindings - * 1) key is the dataType - * 2) the catchall symbol "*" can be used - * 3) selection will start with transport dataType and THEN go to "*" if needed - */ - transports = {}, - - // Avoid comment-prolog char sequence (#10098); must appease lint and evade compression - allTypes = "*/".concat( "*" ), - - // Anchor tag for parsing the document origin - originAnchor = document.createElement( "a" ); - originAnchor.href = location.href; - -// Base "constructor" for jQuery.ajaxPrefilter and jQuery.ajaxTransport -function addToPrefiltersOrTransports( structure ) { - - // dataTypeExpression is optional and defaults to "*" - return function( dataTypeExpression, func ) { - - if ( typeof dataTypeExpression !== "string" ) { - func = dataTypeExpression; - dataTypeExpression = "*"; - } - - var dataType, - i = 0, - dataTypes = dataTypeExpression.toLowerCase().match( rnothtmlwhite ) || []; - - if ( isFunction( func ) ) { - - // For each dataType in the dataTypeExpression - while ( ( dataType = dataTypes[ i++ ] ) ) { - - // Prepend if requested - if ( dataType[ 0 ] === "+" ) { - dataType = dataType.slice( 1 ) || "*"; - ( structure[ dataType ] = structure[ dataType ] || [] ).unshift( func ); - - // Otherwise append - } else { - ( structure[ dataType ] = structure[ dataType ] || [] ).push( func ); - } - } - } - }; -} - -// Base inspection function for prefilters and transports -function inspectPrefiltersOrTransports( structure, options, originalOptions, jqXHR ) { - - var inspected = {}, - seekingTransport = ( structure === transports ); - - function inspect( dataType ) { - var selected; - inspected[ dataType ] = true; - jQuery.each( structure[ dataType ] || [], function( _, prefilterOrFactory ) { - var dataTypeOrTransport = prefilterOrFactory( options, originalOptions, jqXHR ); - if ( typeof dataTypeOrTransport === "string" && - !seekingTransport && !inspected[ dataTypeOrTransport ] ) { - - options.dataTypes.unshift( dataTypeOrTransport ); - inspect( dataTypeOrTransport ); - return false; - } else if ( seekingTransport ) { - return !( selected = dataTypeOrTransport ); - } - } ); - return selected; - } - - return inspect( options.dataTypes[ 0 ] ) || !inspected[ "*" ] && inspect( "*" ); -} - -// A special extend for ajax options -// that takes "flat" options (not to be deep extended) -// Fixes #9887 -function ajaxExtend( target, src ) { - var key, deep, - flatOptions = jQuery.ajaxSettings.flatOptions || {}; - - for ( key in src ) { - if ( src[ key ] !== undefined ) { - ( flatOptions[ key ] ? target : ( deep || ( deep = {} ) ) )[ key ] = src[ key ]; - } - } - if ( deep ) { - jQuery.extend( true, target, deep ); - } - - return target; -} - -/* Handles responses to an ajax request: - * - finds the right dataType (mediates between content-type and expected dataType) - * - returns the corresponding response - */ -function ajaxHandleResponses( s, jqXHR, responses ) { - - var ct, type, finalDataType, firstDataType, - contents = s.contents, - dataTypes = s.dataTypes; - - // Remove auto dataType and get content-type in the process - while ( dataTypes[ 0 ] === "*" ) { - dataTypes.shift(); - if ( ct === undefined ) { - ct = s.mimeType || jqXHR.getResponseHeader( "Content-Type" ); - } - } - - // Check if we're dealing with a known content-type - if ( ct ) { - for ( type in contents ) { - if ( contents[ type ] && contents[ type ].test( ct ) ) { - dataTypes.unshift( type ); - break; - } - } - } - - // Check to see if we have a response for the expected dataType - if ( dataTypes[ 0 ] in responses ) { - finalDataType = dataTypes[ 0 ]; - } else { - - // Try convertible dataTypes - for ( type in responses ) { - if ( !dataTypes[ 0 ] || s.converters[ type + " " + dataTypes[ 0 ] ] ) { - finalDataType = type; - break; - } - if ( !firstDataType ) { - firstDataType = type; - } - } - - // Or just use first one - finalDataType = finalDataType || firstDataType; - } - - // If we found a dataType - // We add the dataType to the list if needed - // and return the corresponding response - if ( finalDataType ) { - if ( finalDataType !== dataTypes[ 0 ] ) { - dataTypes.unshift( finalDataType ); - } - return responses[ finalDataType ]; - } -} - -/* Chain conversions given the request and the original response - * Also sets the responseXXX fields on the jqXHR instance - */ -function ajaxConvert( s, response, jqXHR, isSuccess ) { - var conv2, current, conv, tmp, prev, - converters = {}, - - // Work with a copy of dataTypes in case we need to modify it for conversion - dataTypes = s.dataTypes.slice(); - - // Create converters map with lowercased keys - if ( dataTypes[ 1 ] ) { - for ( conv in s.converters ) { - converters[ conv.toLowerCase() ] = s.converters[ conv ]; - } - } - - current = dataTypes.shift(); - - // Convert to each sequential dataType - while ( current ) { - - if ( s.responseFields[ current ] ) { - jqXHR[ s.responseFields[ current ] ] = response; - } - - // Apply the dataFilter if provided - if ( !prev && isSuccess && s.dataFilter ) { - response = s.dataFilter( response, s.dataType ); - } - - prev = current; - current = dataTypes.shift(); - - if ( current ) { - - // There's only work to do if current dataType is non-auto - if ( current === "*" ) { - - current = prev; - - // Convert response if prev dataType is non-auto and differs from current - } else if ( prev !== "*" && prev !== current ) { - - // Seek a direct converter - conv = converters[ prev + " " + current ] || converters[ "* " + current ]; - - // If none found, seek a pair - if ( !conv ) { - for ( conv2 in converters ) { - - // If conv2 outputs current - tmp = conv2.split( " " ); - if ( tmp[ 1 ] === current ) { - - // If prev can be converted to accepted input - conv = converters[ prev + " " + tmp[ 0 ] ] || - converters[ "* " + tmp[ 0 ] ]; - if ( conv ) { - - // Condense equivalence converters - if ( conv === true ) { - conv = converters[ conv2 ]; - - // Otherwise, insert the intermediate dataType - } else if ( converters[ conv2 ] !== true ) { - current = tmp[ 0 ]; - dataTypes.unshift( tmp[ 1 ] ); - } - break; - } - } - } - } - - // Apply converter (if not an equivalence) - if ( conv !== true ) { - - // Unless errors are allowed to bubble, catch and return them - if ( conv && s.throws ) { - response = conv( response ); - } else { - try { - response = conv( response ); - } catch ( e ) { - return { - state: "parsererror", - error: conv ? e : "No conversion from " + prev + " to " + current - }; - } - } - } - } - } - } - - return { state: "success", data: response }; -} - -jQuery.extend( { - - // Counter for holding the number of active queries - active: 0, - - // Last-Modified header cache for next request - lastModified: {}, - etag: {}, - - ajaxSettings: { - url: location.href, - type: "GET", - isLocal: rlocalProtocol.test( location.protocol ), - global: true, - processData: true, - async: true, - contentType: "application/x-www-form-urlencoded; charset=UTF-8", - - /* - timeout: 0, - data: null, - dataType: null, - username: null, - password: null, - cache: null, - throws: false, - traditional: false, - headers: {}, - */ - - accepts: { - "*": allTypes, - text: "text/plain", - html: "text/html", - xml: "application/xml, text/xml", - json: "application/json, text/javascript" - }, - - contents: { - xml: /\bxml\b/, - html: /\bhtml/, - json: /\bjson\b/ - }, - - responseFields: { - xml: "responseXML", - text: "responseText", - json: "responseJSON" - }, - - // Data converters - // Keys separate source (or catchall "*") and destination types with a single space - converters: { - - // Convert anything to text - "* text": String, - - // Text to html (true = no transformation) - "text html": true, - - // Evaluate text as a json expression - "text json": JSON.parse, - - // Parse text as xml - "text xml": jQuery.parseXML - }, - - // For options that shouldn't be deep extended: - // you can add your own custom options here if - // and when you create one that shouldn't be - // deep extended (see ajaxExtend) - flatOptions: { - url: true, - context: true - } - }, - - // Creates a full fledged settings object into target - // with both ajaxSettings and settings fields. - // If target is omitted, writes into ajaxSettings. - ajaxSetup: function( target, settings ) { - return settings ? - - // Building a settings object - ajaxExtend( ajaxExtend( target, jQuery.ajaxSettings ), settings ) : - - // Extending ajaxSettings - ajaxExtend( jQuery.ajaxSettings, target ); - }, - - ajaxPrefilter: addToPrefiltersOrTransports( prefilters ), - ajaxTransport: addToPrefiltersOrTransports( transports ), - - // Main method - ajax: function( url, options ) { - - // If url is an object, simulate pre-1.5 signature - if ( typeof url === "object" ) { - options = url; - url = undefined; - } - - // Force options to be an object - options = options || {}; - - var transport, - - // URL without anti-cache param - cacheURL, - - // Response headers - responseHeadersString, - responseHeaders, - - // timeout handle - timeoutTimer, - - // Url cleanup var - urlAnchor, - - // Request state (becomes false upon send and true upon completion) - completed, - - // To know if global events are to be dispatched - fireGlobals, - - // Loop variable - i, - - // uncached part of the url - uncached, - - // Create the final options object - s = jQuery.ajaxSetup( {}, options ), - - // Callbacks context - callbackContext = s.context || s, - - // Context for global events is callbackContext if it is a DOM node or jQuery collection - globalEventContext = s.context && - ( callbackContext.nodeType || callbackContext.jquery ) ? - jQuery( callbackContext ) : - jQuery.event, - - // Deferreds - deferred = jQuery.Deferred(), - completeDeferred = jQuery.Callbacks( "once memory" ), - - // Status-dependent callbacks - statusCode = s.statusCode || {}, - - // Headers (they are sent all at once) - requestHeaders = {}, - requestHeadersNames = {}, - - // Default abort message - strAbort = "canceled", - - // Fake xhr - jqXHR = { - readyState: 0, - - // Builds headers hashtable if needed - getResponseHeader: function( key ) { - var match; - if ( completed ) { - if ( !responseHeaders ) { - responseHeaders = {}; - while ( ( match = rheaders.exec( responseHeadersString ) ) ) { - responseHeaders[ match[ 1 ].toLowerCase() + " " ] = - ( responseHeaders[ match[ 1 ].toLowerCase() + " " ] || [] ) - .concat( match[ 2 ] ); - } - } - match = responseHeaders[ key.toLowerCase() + " " ]; - } - return match == null ? null : match.join( ", " ); - }, - - // Raw string - getAllResponseHeaders: function() { - return completed ? responseHeadersString : null; - }, - - // Caches the header - setRequestHeader: function( name, value ) { - if ( completed == null ) { - name = requestHeadersNames[ name.toLowerCase() ] = - requestHeadersNames[ name.toLowerCase() ] || name; - requestHeaders[ name ] = value; - } - return this; - }, - - // Overrides response content-type header - overrideMimeType: function( type ) { - if ( completed == null ) { - s.mimeType = type; - } - return this; - }, - - // Status-dependent callbacks - statusCode: function( map ) { - var code; - if ( map ) { - if ( completed ) { - - // Execute the appropriate callbacks - jqXHR.always( map[ jqXHR.status ] ); - } else { - - // Lazy-add the new callbacks in a way that preserves old ones - for ( code in map ) { - statusCode[ code ] = [ statusCode[ code ], map[ code ] ]; - } - } - } - return this; - }, - - // Cancel the request - abort: function( statusText ) { - var finalText = statusText || strAbort; - if ( transport ) { - transport.abort( finalText ); - } - done( 0, finalText ); - return this; - } - }; - - // Attach deferreds - deferred.promise( jqXHR ); - - // Add protocol if not provided (prefilters might expect it) - // Handle falsy url in the settings object (#10093: consistency with old signature) - // We also use the url parameter if available - s.url = ( ( url || s.url || location.href ) + "" ) - .replace( rprotocol, location.protocol + "//" ); - - // Alias method option to type as per ticket #12004 - s.type = options.method || options.type || s.method || s.type; - - // Extract dataTypes list - s.dataTypes = ( s.dataType || "*" ).toLowerCase().match( rnothtmlwhite ) || [ "" ]; - - // A cross-domain request is in order when the origin doesn't match the current origin. - if ( s.crossDomain == null ) { - urlAnchor = document.createElement( "a" ); - - // Support: IE <=8 - 11, Edge 12 - 15 - // IE throws exception on accessing the href property if url is malformed, - // e.g. http://example.com:80x/ - try { - urlAnchor.href = s.url; - - // Support: IE <=8 - 11 only - // Anchor's host property isn't correctly set when s.url is relative - urlAnchor.href = urlAnchor.href; - s.crossDomain = originAnchor.protocol + "//" + originAnchor.host !== - urlAnchor.protocol + "//" + urlAnchor.host; - } catch ( e ) { - - // If there is an error parsing the URL, assume it is crossDomain, - // it can be rejected by the transport if it is invalid - s.crossDomain = true; - } - } - - // Convert data if not already a string - if ( s.data && s.processData && typeof s.data !== "string" ) { - s.data = jQuery.param( s.data, s.traditional ); - } - - // Apply prefilters - inspectPrefiltersOrTransports( prefilters, s, options, jqXHR ); - - // If request was aborted inside a prefilter, stop there - if ( completed ) { - return jqXHR; - } - - // We can fire global events as of now if asked to - // Don't fire events if jQuery.event is undefined in an AMD-usage scenario (#15118) - fireGlobals = jQuery.event && s.global; - - // Watch for a new set of requests - if ( fireGlobals && jQuery.active++ === 0 ) { - jQuery.event.trigger( "ajaxStart" ); - } - - // Uppercase the type - s.type = s.type.toUpperCase(); - - // Determine if request has content - s.hasContent = !rnoContent.test( s.type ); - - // Save the URL in case we're toying with the If-Modified-Since - // and/or If-None-Match header later on - // Remove hash to simplify url manipulation - cacheURL = s.url.replace( rhash, "" ); - - // More options handling for requests with no content - if ( !s.hasContent ) { - - // Remember the hash so we can put it back - uncached = s.url.slice( cacheURL.length ); - - // If data is available and should be processed, append data to url - if ( s.data && ( s.processData || typeof s.data === "string" ) ) { - cacheURL += ( rquery.test( cacheURL ) ? "&" : "?" ) + s.data; - - // #9682: remove data so that it's not used in an eventual retry - delete s.data; - } - - // Add or update anti-cache param if needed - if ( s.cache === false ) { - cacheURL = cacheURL.replace( rantiCache, "$1" ); - uncached = ( rquery.test( cacheURL ) ? "&" : "?" ) + "_=" + ( nonce++ ) + uncached; - } - - // Put hash and anti-cache on the URL that will be requested (gh-1732) - s.url = cacheURL + uncached; - - // Change '%20' to '+' if this is encoded form body content (gh-2658) - } else if ( s.data && s.processData && - ( s.contentType || "" ).indexOf( "application/x-www-form-urlencoded" ) === 0 ) { - s.data = s.data.replace( r20, "+" ); - } - - // Set the If-Modified-Since and/or If-None-Match header, if in ifModified mode. - if ( s.ifModified ) { - if ( jQuery.lastModified[ cacheURL ] ) { - jqXHR.setRequestHeader( "If-Modified-Since", jQuery.lastModified[ cacheURL ] ); - } - if ( jQuery.etag[ cacheURL ] ) { - jqXHR.setRequestHeader( "If-None-Match", jQuery.etag[ cacheURL ] ); - } - } - - // Set the correct header, if data is being sent - if ( s.data && s.hasContent && s.contentType !== false || options.contentType ) { - jqXHR.setRequestHeader( "Content-Type", s.contentType ); - } - - // Set the Accepts header for the server, depending on the dataType - jqXHR.setRequestHeader( - "Accept", - s.dataTypes[ 0 ] && s.accepts[ s.dataTypes[ 0 ] ] ? - s.accepts[ s.dataTypes[ 0 ] ] + - ( s.dataTypes[ 0 ] !== "*" ? ", " + allTypes + "; q=0.01" : "" ) : - s.accepts[ "*" ] - ); - - // Check for headers option - for ( i in s.headers ) { - jqXHR.setRequestHeader( i, s.headers[ i ] ); - } - - // Allow custom headers/mimetypes and early abort - if ( s.beforeSend && - ( s.beforeSend.call( callbackContext, jqXHR, s ) === false || completed ) ) { - - // Abort if not done already and return - return jqXHR.abort(); - } - - // Aborting is no longer a cancellation - strAbort = "abort"; - - // Install callbacks on deferreds - completeDeferred.add( s.complete ); - jqXHR.done( s.success ); - jqXHR.fail( s.error ); - - // Get transport - transport = inspectPrefiltersOrTransports( transports, s, options, jqXHR ); - - // If no transport, we auto-abort - if ( !transport ) { - done( -1, "No Transport" ); - } else { - jqXHR.readyState = 1; - - // Send global event - if ( fireGlobals ) { - globalEventContext.trigger( "ajaxSend", [ jqXHR, s ] ); - } - - // If request was aborted inside ajaxSend, stop there - if ( completed ) { - return jqXHR; - } - - // Timeout - if ( s.async && s.timeout > 0 ) { - timeoutTimer = window.setTimeout( function() { - jqXHR.abort( "timeout" ); - }, s.timeout ); - } - - try { - completed = false; - transport.send( requestHeaders, done ); - } catch ( e ) { - - // Rethrow post-completion exceptions - if ( completed ) { - throw e; - } - - // Propagate others as results - done( -1, e ); - } - } - - // Callback for when everything is done - function done( status, nativeStatusText, responses, headers ) { - var isSuccess, success, error, response, modified, - statusText = nativeStatusText; - - // Ignore repeat invocations - if ( completed ) { - return; - } - - completed = true; - - // Clear timeout if it exists - if ( timeoutTimer ) { - window.clearTimeout( timeoutTimer ); - } - - // Dereference transport for early garbage collection - // (no matter how long the jqXHR object will be used) - transport = undefined; - - // Cache response headers - responseHeadersString = headers || ""; - - // Set readyState - jqXHR.readyState = status > 0 ? 4 : 0; - - // Determine if successful - isSuccess = status >= 200 && status < 300 || status === 304; - - // Get response data - if ( responses ) { - response = ajaxHandleResponses( s, jqXHR, responses ); - } - - // Convert no matter what (that way responseXXX fields are always set) - response = ajaxConvert( s, response, jqXHR, isSuccess ); - - // If successful, handle type chaining - if ( isSuccess ) { - - // Set the If-Modified-Since and/or If-None-Match header, if in ifModified mode. - if ( s.ifModified ) { - modified = jqXHR.getResponseHeader( "Last-Modified" ); - if ( modified ) { - jQuery.lastModified[ cacheURL ] = modified; - } - modified = jqXHR.getResponseHeader( "etag" ); - if ( modified ) { - jQuery.etag[ cacheURL ] = modified; - } - } - - // if no content - if ( status === 204 || s.type === "HEAD" ) { - statusText = "nocontent"; - - // if not modified - } else if ( status === 304 ) { - statusText = "notmodified"; - - // If we have data, let's convert it - } else { - statusText = response.state; - success = response.data; - error = response.error; - isSuccess = !error; - } - } else { - - // Extract error from statusText and normalize for non-aborts - error = statusText; - if ( status || !statusText ) { - statusText = "error"; - if ( status < 0 ) { - status = 0; - } - } - } - - // Set data for the fake xhr object - jqXHR.status = status; - jqXHR.statusText = ( nativeStatusText || statusText ) + ""; - - // Success/Error - if ( isSuccess ) { - deferred.resolveWith( callbackContext, [ success, statusText, jqXHR ] ); - } else { - deferred.rejectWith( callbackContext, [ jqXHR, statusText, error ] ); - } - - // Status-dependent callbacks - jqXHR.statusCode( statusCode ); - statusCode = undefined; - - if ( fireGlobals ) { - globalEventContext.trigger( isSuccess ? "ajaxSuccess" : "ajaxError", - [ jqXHR, s, isSuccess ? success : error ] ); - } - - // Complete - completeDeferred.fireWith( callbackContext, [ jqXHR, statusText ] ); - - if ( fireGlobals ) { - globalEventContext.trigger( "ajaxComplete", [ jqXHR, s ] ); - - // Handle the global AJAX counter - if ( !( --jQuery.active ) ) { - jQuery.event.trigger( "ajaxStop" ); - } - } - } - - return jqXHR; - }, - - getJSON: function( url, data, callback ) { - return jQuery.get( url, data, callback, "json" ); - }, - - getScript: function( url, callback ) { - return jQuery.get( url, undefined, callback, "script" ); - } -} ); - -jQuery.each( [ "get", "post" ], function( i, method ) { - jQuery[ method ] = function( url, data, callback, type ) { - - // Shift arguments if data argument was omitted - if ( isFunction( data ) ) { - type = type || callback; - callback = data; - data = undefined; - } - - // The url can be an options object (which then must have .url) - return jQuery.ajax( jQuery.extend( { - url: url, - type: method, - dataType: type, - data: data, - success: callback - }, jQuery.isPlainObject( url ) && url ) ); - }; -} ); - - -jQuery._evalUrl = function( url, options ) { - return jQuery.ajax( { - url: url, - - // Make this explicit, since user can override this through ajaxSetup (#11264) - type: "GET", - dataType: "script", - cache: true, - async: false, - global: false, - - // Only evaluate the response if it is successful (gh-4126) - // dataFilter is not invoked for failure responses, so using it instead - // of the default converter is kludgy but it works. - converters: { - "text script": function() {} - }, - dataFilter: function( response ) { - jQuery.globalEval( response, options ); - } - } ); -}; - - -jQuery.fn.extend( { - wrapAll: function( html ) { - var wrap; - - if ( this[ 0 ] ) { - if ( isFunction( html ) ) { - html = html.call( this[ 0 ] ); - } - - // The elements to wrap the target around - wrap = jQuery( html, this[ 0 ].ownerDocument ).eq( 0 ).clone( true ); - - if ( this[ 0 ].parentNode ) { - wrap.insertBefore( this[ 0 ] ); - } - - wrap.map( function() { - var elem = this; - - while ( elem.firstElementChild ) { - elem = elem.firstElementChild; - } - - return elem; - } ).append( this ); - } - - return this; - }, - - wrapInner: function( html ) { - if ( isFunction( html ) ) { - return this.each( function( i ) { - jQuery( this ).wrapInner( html.call( this, i ) ); - } ); - } - - return this.each( function() { - var self = jQuery( this ), - contents = self.contents(); - - if ( contents.length ) { - contents.wrapAll( html ); - - } else { - self.append( html ); - } - } ); - }, - - wrap: function( html ) { - var htmlIsFunction = isFunction( html ); - - return this.each( function( i ) { - jQuery( this ).wrapAll( htmlIsFunction ? html.call( this, i ) : html ); - } ); - }, - - unwrap: function( selector ) { - this.parent( selector ).not( "body" ).each( function() { - jQuery( this ).replaceWith( this.childNodes ); - } ); - return this; - } -} ); - - -jQuery.expr.pseudos.hidden = function( elem ) { - return !jQuery.expr.pseudos.visible( elem ); -}; -jQuery.expr.pseudos.visible = function( elem ) { - return !!( elem.offsetWidth || elem.offsetHeight || elem.getClientRects().length ); -}; - - - - -jQuery.ajaxSettings.xhr = function() { - try { - return new window.XMLHttpRequest(); - } catch ( e ) {} -}; - -var xhrSuccessStatus = { - - // File protocol always yields status code 0, assume 200 - 0: 200, - - // Support: IE <=9 only - // #1450: sometimes IE returns 1223 when it should be 204 - 1223: 204 - }, - xhrSupported = jQuery.ajaxSettings.xhr(); - -support.cors = !!xhrSupported && ( "withCredentials" in xhrSupported ); -support.ajax = xhrSupported = !!xhrSupported; - -jQuery.ajaxTransport( function( options ) { - var callback, errorCallback; - - // Cross domain only allowed if supported through XMLHttpRequest - if ( support.cors || xhrSupported && !options.crossDomain ) { - return { - send: function( headers, complete ) { - var i, - xhr = options.xhr(); - - xhr.open( - options.type, - options.url, - options.async, - options.username, - options.password - ); - - // Apply custom fields if provided - if ( options.xhrFields ) { - for ( i in options.xhrFields ) { - xhr[ i ] = options.xhrFields[ i ]; - } - } - - // Override mime type if needed - if ( options.mimeType && xhr.overrideMimeType ) { - xhr.overrideMimeType( options.mimeType ); - } - - // X-Requested-With header - // For cross-domain requests, seeing as conditions for a preflight are - // akin to a jigsaw puzzle, we simply never set it to be sure. - // (it can always be set on a per-request basis or even using ajaxSetup) - // For same-domain requests, won't change header if already provided. - if ( !options.crossDomain && !headers[ "X-Requested-With" ] ) { - headers[ "X-Requested-With" ] = "XMLHttpRequest"; - } - - // Set headers - for ( i in headers ) { - xhr.setRequestHeader( i, headers[ i ] ); - } - - // Callback - callback = function( type ) { - return function() { - if ( callback ) { - callback = errorCallback = xhr.onload = - xhr.onerror = xhr.onabort = xhr.ontimeout = - xhr.onreadystatechange = null; - - if ( type === "abort" ) { - xhr.abort(); - } else if ( type === "error" ) { - - // Support: IE <=9 only - // On a manual native abort, IE9 throws - // errors on any property access that is not readyState - if ( typeof xhr.status !== "number" ) { - complete( 0, "error" ); - } else { - complete( - - // File: protocol always yields status 0; see #8605, #14207 - xhr.status, - xhr.statusText - ); - } - } else { - complete( - xhrSuccessStatus[ xhr.status ] || xhr.status, - xhr.statusText, - - // Support: IE <=9 only - // IE9 has no XHR2 but throws on binary (trac-11426) - // For XHR2 non-text, let the caller handle it (gh-2498) - ( xhr.responseType || "text" ) !== "text" || - typeof xhr.responseText !== "string" ? - { binary: xhr.response } : - { text: xhr.responseText }, - xhr.getAllResponseHeaders() - ); - } - } - }; - }; - - // Listen to events - xhr.onload = callback(); - errorCallback = xhr.onerror = xhr.ontimeout = callback( "error" ); - - // Support: IE 9 only - // Use onreadystatechange to replace onabort - // to handle uncaught aborts - if ( xhr.onabort !== undefined ) { - xhr.onabort = errorCallback; - } else { - xhr.onreadystatechange = function() { - - // Check readyState before timeout as it changes - if ( xhr.readyState === 4 ) { - - // Allow onerror to be called first, - // but that will not handle a native abort - // Also, save errorCallback to a variable - // as xhr.onerror cannot be accessed - window.setTimeout( function() { - if ( callback ) { - errorCallback(); - } - } ); - } - }; - } - - // Create the abort callback - callback = callback( "abort" ); - - try { - - // Do send the request (this may raise an exception) - xhr.send( options.hasContent && options.data || null ); - } catch ( e ) { - - // #14683: Only rethrow if this hasn't been notified as an error yet - if ( callback ) { - throw e; - } - } - }, - - abort: function() { - if ( callback ) { - callback(); - } - } - }; - } -} ); - - - - -// Prevent auto-execution of scripts when no explicit dataType was provided (See gh-2432) -jQuery.ajaxPrefilter( function( s ) { - if ( s.crossDomain ) { - s.contents.script = false; - } -} ); - -// Install script dataType -jQuery.ajaxSetup( { - accepts: { - script: "text/javascript, application/javascript, " + - "application/ecmascript, application/x-ecmascript" - }, - contents: { - script: /\b(?:java|ecma)script\b/ - }, - converters: { - "text script": function( text ) { - jQuery.globalEval( text ); - return text; - } - } -} ); - -// Handle cache's special case and crossDomain -jQuery.ajaxPrefilter( "script", function( s ) { - if ( s.cache === undefined ) { - s.cache = false; - } - if ( s.crossDomain ) { - s.type = "GET"; - } -} ); - -// Bind script tag hack transport -jQuery.ajaxTransport( "script", function( s ) { - - // This transport only deals with cross domain or forced-by-attrs requests - if ( s.crossDomain || s.scriptAttrs ) { - var script, callback; - return { - send: function( _, complete ) { - script = jQuery( " - - - - - - - - - - - - - - - - - - -
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    Files used in PDF extraction

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    Configuration file

    -

    Configuration files may define the PDF processing parameters. -By default, the pdfgetx3 program attempts to read -.pdfgetx3.cfg file from the user HOME directory, -then .pdfgetx3.cfg and pdfgetx3.cfg files -from the current working directory. -If configuration file has a different name, it needs to be specified -with the -c, --config option. -The pdfgetn3 program works in the same way, -except it checks for configuration files -~/.pdfgetn3.cfg, .pdfgetn3.cfg and pdfgetn3.cfg.

    -

    The easiest way of creating a configuration file is to generate -a template content using the --createconfig option as

    -
    pdfgetx3 --createconfig=test.cfg
-
    -
    -

    and then change the generated test.cfg file in your favorite text -editor. The configuration file follows a simple “varname=value” syntax, -any lines starting with “#” are ignored as comments.

    -

    The configuration file has several sections marked as [SECTIONNAME]. -The [DEFAULT] section is mandatory and it contains the default -global settings. Any other sections are optional and they are applied -only when selected with the -s, --section option on the -command line. Thus

    -
    pdfgetx3 --config=test.cfg --section=nacl
-
    -
    -

    would read the parameters from the [nacl] section after reading the -defaults. Having several sections in the configuration -file is useful when there are multiple measurements that share most of -the parameters, but differ in a few of them, for example in chemical -composition. The configuration file can then contain sections per each -sample that define only the composition, while all other parameters are -specified just once in the global DEFAULT section.

    -
    -
    -

    Input files

    -

    PDFgetX3 and PDFgetN3 accept input powder diffraction data -in the form of two-column text file, -where the first column x is either the scattering angle -2Θ in degrees, momentum transfer Q in inverse nanometers or Q -in inverse ångströms. The second column y contains the corresponding -scattered intensities normalized per unit solid angle. The actual type -of the x-values is identified by the dataformat parameter. -The input files may contain header with comments or metadata, and the -actual data are read from the first long section of numerical values.

    -

    The input files are usually passed as command-line arguments to -pdfgetx3 or pdfgetn3 programs and must be paths -accessible from the current working directory.

    -

    Input files can be also defined by setting the inputfile -value in the configuration file. The -d, --datapath -option can be then used to provide additional data directories to -search for these inputs and for the backgroundfile. -This is to support configuration files located in a different -directory than the data.

    -

    When the --find option is active, the pdfgetx3 arguments -are understood as filename patterns and the input files are found -in the current or specified directory.

    -
    -
    -

    Output files

    -

    PDFgetX3 and PDFgetN3 can produce up to four different output data files:

    -
      -

    • .iq – I(Q), the background-corrected -intensities sampled on a regular Q-space grid in inverse ångströms,

      • -

    • .sq – S(Q), the total scattering structure function, -with intensities normalized by average scattering factors and -corrected by a polynomial fit,

      • -

    • .fq – F(Q), the reduced structure function equal to Q(S(Q) - 1),

      • -

    • .gr – G(r), the resultant PDF, where the first column is the -separation r in ångströms and the second is the function G in -Å-2.

      • -
    -

    You can specify what output files should be produced by setting the -outputtypes parameter in the configuration file or by -passing the -t, --outputtypes on the command line.

    -

    The header of all output files contains the parameter values that were -used in the calculation and thus it is by itself a valid configuration -file. When passed as an argument to the --config option, -the PDFgetX3 will reproduce the previous calculation.

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    Software requirements

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    This software is written in Python programming language, therefore -you must have Python 3.8, 3.7, 3.6, 3.5 or 2.7 installed. In addition, -the following third-party Python libraries are also required:

    -
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    • pip - Python package installer

      • -

    • setuptools - tools for installing Python packages

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    • six - Python 2 and 3 compatibility library

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    • NumPy - library for scientific computing with Python

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    • matplotlib - Python plotting library

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    • IPython - enhanced interactive Python shell

      • -
    -

    Standard Python releases can be obtained from -https://www.python.org/downloads. -The third-party libraries can be found at the -Python Package Index -or using any Internet search engine.

    -

    Another more convenient option is to obtain one of the science-oriented -Python distributions such as -Anaconda Python, -Enthought Canopy or -PythonXY, -These distributions already include all the necessary libraries, so the -required Python software can be all installed in one step.

    -

    On Linux operating systems the third-party libraries are usually -included in a system software repository. For example on an -Ubuntu Linux computer the software dependencies can be all installed -with a single shell command

    -
    sudo apt-get install \
-  python3-pip python3-setuptools python3-six \
-  python3-numpy python3-matplotlib ipython3
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    This may be, of course, as well accomplished using the GUI -driven Synaptic package manager. Other Linux -distributions may use different software management tools, -but the names of the necessary packages should be very similar -to those above.

    -

    On Windows operating system, it may be necessary to add the -C:\Python37 directory and the scripts directory -C:\Python37\Scripts to the system PATH. Some Python -distributions already do so as a part of their installation process. The -easiest way to check is to start the Command Prompt, type -there python and see if this starts the Python interpreter.

    -

    Alternately, if you want to run the diffpy.pdfgetx software with a specific version of Python, -we recommend using a virtual environment, such as conda. For example, if you have Anaconda Python installed, -you can create a conda virtual environment to install the software as follow

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    conda create --name pdfgetx_env numpy matplotlib ipython --python=3.8
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    You can choose the name of the environment and python version as you desire. You can choose any of the -supported Python versions. Then, activate this environment and follow the instructions in the -next section to install the software

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    conda activate pdfgetx_env
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    Installation

    -

    The diffpy.pdfgetx software is distributed as a Python wheel file, -which can be obtained from the -Columbia Technology Ventures. -Once all the required software is in -place, start the command prompt on Windows or a Unix terminal on Linux -or Mac, navigate to the directory that contains the wheel file and -execute the following command:

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    pip install ./diffpy.pdfgetx-VERSION.whl
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    Here VERSION needs to be replaced to match the actual filename. It is -critical that pip installer is from a supported Python version otherwise -the program would not work. On Linux and Mac operating systems the installation may need to run with root user privileges, for example, by prepending sudo to the command line above. If root access is not available, use the pip install options --user or --prefix to install the software to a user-writable directory.

    -

    The package provides three programs for PDF conversion, pdfgetx3, pdfgetn3 and pdfgets3. To check if they are correctly installed run

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    pdfgetx3 --version
-pdfgetn3 --version
-pdfgets3 --version
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    -
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    This should display the software version, which should agree -with the VERSION string in the wheel package name. -The installation also includes a plotdata -command for an easy plotting of text data files. To verify -if plotdata works, run the plotdata --version command. -Finally, a comprehensive test of the installed software can -be executed using

    -
    python -m diffpy.pdfgetx.tests.run
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    Note

    -

    Older versions of diffpy.pdfgetx use Python egg format -instead of Python wheel. -To install these use the easy_install command as follows:

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    python -m easy_install ./diffpy.pdfgetx-VERSION.egg
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    IPython magic command

    -

    These instructions are intended for IPython users who would like to -integrate PDFgetX3, PDFgetN3 and PDFgetS3 into their IPython environment. If -you don’t plan to customize IPython in such way you can safely skip -this paragraph.

    -

    When pdfgetx3 or pdfgetn3 or pdfgets3 is run in interactive mode, it start -IPython interactive shell and define an extra %pdfgetx3, %pdfgetn3 and %pdfgets3 magic commands within the IPython session. The IPython -magic commands are not valid Python code, but work in a similar -fashion as standard shell commands. The %pdfgetx3, %pdfgetn3 and %pdfgets3 magics can be thus used with the same options and arguments as if run from the shell. This is useful for processing more files, while -preserving all plots or variables that were already created -in an IPython session.

    -

    The %pdfgetx3, %pdfgetn3 and %pdfgets3 magic commands can be defined -permanently so they are available in all IPython sessions. To set -this up

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      -

    1. find the profile_default/ipython_config.py file and open it -in a text editor. If that file does not exists, -create it first by executing

      -
      ipython profile create
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      -
      -
      2. -

    2. navigate to the paragraph that contains the -c.InteractiveShellApp.extensions and add there -the following line

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      c.InteractiveShellApp.extensions = ['diffpy.pdfgetx.ipy_magics']
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      There must be no leading indent, i.e., the text must start at the -very first column.

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    Navigation

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    Interactive mode

    -

    The interactive mode is activated by using either the --i, --interact option or a non-empty ---plot option. In the interactive mode -the program starts an IPython interactive shell and pre-loads several -functions and variables related to the PDF calculation. It also defines -IPython commands %pdfgetx3 and %pdfgetn3, which can be used with -the same syntax as the pdfgetx3 and pdfgetn3 in -system shell. -The interactive session is also initialized with all functions from the -matplotlib.pyplot module for convenient plotting. -The functions and variables related to PDF processing are:

    -
    -
    -pdfgetter(x=None, y=None, filename='', **kwargs)
    -

    Instance of the PDFGetter class which serves as a -low-level function that calculates the PDF. This is a callable -object, which takes as an argument a pair of input arrays for -(Q, intensity) or (2Θ, intensity) depending on -dataformat. It can be also called with a keyword -argument filename=FILE, which would read the input arrays -from the specified file. When called with no arguments, -it calculates PDF from the last input data.

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    Parameters
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    • x (numpy.ndarray, optional) – -The Q or 2Θ values in powder diffraction pattern.

      • -

    • y (numpy.ndarray, optional) – -The scattered intensities in powder diffraction pattern

      • -

    • filename (str, optional) – -The text data file for loading the x, y values when -they are not specified.

      • -

    • kwargs (misc, optional) – -Extra keyword arguments that are applied to -the config object, for example qmax=20.

      • -
    -
    -
    Returns
    -

    A pair of output arrays (r, G).

    -
    -
    -
    - -
    -
    -config
    -

    Instance of the PDFConfig class that stores the -parameters and input files for the program. -Use print(config) to display the current configuration values. -This is the same object as pdfgetter.config. Configuration -may be changed by setting a respective attribute of the -config object, for example:

    -
    In [1]: config.qmax = 21
-
    -
    -

    The config values may be also changed by calling the -pdfgetter() or processfiles() function with a -corresponding keyword argument, for example -processfiles(qmax=20, force="once").

    -
    - -
    -
    -iraw
    -
    -iq
    -
    -sq
    -
    -fq
    -
    -gr
    -

    These variables are assigned the input raw intensities and the -intermediate results, stored as matrix rows. The matrix rows -correspond to twotheta1, intensity1, twotheta2, intensity2, etc. -Because matrices are iterated row first, the raw intensities -from all input files can be plotted with the matplotlib plot -function as plot(*iraw).

    -

    These variables should be considered read-only and are reset -with subsequent PDF calculations.

    -
    - -
    -
    -tuneconfig(plotids=None, pdfgetter=None, axeslist=None)
    -

    Show a GUI dialog for interactive tuning of configuration variables.

    -
    -
    Parameters
    -
      -

    • plotids – The string or iterable that specify what interactive plots should be -tuned. By default the same as config.plot. It can be also an -integer index or name of a transformation in pdfgetter() or -a reference to a Transformation object.

      • -

    • pdfgetter – The optional PDFGetter object to be tuned. -This is by default the interactive pdfgetter() object.

      • -

    • axeslist – An optional list of matplotlib Axes for showing interactive plots. -When None, use subplot(N, 1, i) to create any necessary axes.

      • -
    -
    -
    -
    -

    Note

    -

    Changes from tuneconfig() apply only to the configuration -and results in memory. Use the processfiles() function -to save them to disk.

    -
    -
    -

    See also

    -

    Interactive tuning of parameters tutorial

    -
    -
    - -
    -
    -processfiles(filename=None, **kwargs)
    -

    Process all input files again with the current configuration values. -This is a higher-level function than pdfgetter(), as -it also saves output files and produces plots as specified by the -config object.

    -
    -
    Parameters
    -
      -

    • filename – One or more input files to be converted to PDFs and saved or -plotted according to the config settings. Use the -previous list of input files when not specified.

      • -

    • kwargs – An optional keyword arguments to set for the config -object, for example (force="once", qmax=18).

      • -
    -
    -
    -

    This function updates the config.inputfiles -list and the iraw, iq, -sq, fq and gr -interactive variables.

    -
    - -
    -
    -clearsession()
    -

    Clear all elements from the config.inputfiles -and also the -iraw, iq, sq, -fq and gr variables.

    -
    -
    Returns
    -

    No return value.

    -
    -
    -
    - -
    -
    -loaddata(filename, minrows=10, usecols=None, **kwargs)
    -

    Find and load data from a text file.

    -

    The data reading starts at the first matrix block of at least minrows rows -and constant number of columns. This seems to work for most of the -datafiles including those generated by PDFGetX2.

    -
    -
    Parameters
    -
      -

    • filename (str) – Name of the file to load the text data from.

      • -

    • minrows (int, optional) – Minimum number of rows in the first data block, by default 10. -All rows must have the same number of floating point values.

      • -

    • usecols (int, str, slice, iterable, optional) – Indices or names of the columns to be loaded from the data block, -the default is all columns. Data blocks that do not contain -sufficient number of columns are skipped. When usecols contain -string items, they are translated to column indices by looking -up a header line preceding the data block. String items formatted -as i:j:k are converted to slice objects. When usecols type -is string it is split to a list of names at comma and whitespace -characters.

      • -

    • unpack (bool, optional) – Return data as a sequence of columns that allows tuple unpacking -such as x, y = loaddata(FILENAME, unpack=True). Note that -transposing the loaded array as loaddata(FILENAME).T has -the same effect. The default is False.

      • -

    • kwargs (misc, optional) – Extra keyword arguments that are passed to numpy.loadtxt.

      • -
    -
    -
    Returns
    -

    data (numpy.ndarray) – The data block loaded from the text file.

    -
    -
    -
    -

    See also

    -

    numpy.loadtxt()

    -
    -

    This function can be imported from the -diffpy.pdfgetx module.

    -
    - -
    -
    -plotdata(filenames, style=None, x=None, y=None, log=None, ax=None, **kwargs)
    -

    Plot one or more text data files.

    -

    The files are searched for data blocks which have enough columns -to satisfy both x and y selectors of the plotted data. This -may result in an empty plot when file has none wide-enough data -block (e.g., when y=100).

    -
    -
    Parameters
    -
      -

    • filenames (str or an iterable of string file names) – One or more text data files to be plotted.

      • -

    • style (str) – Optional style argument for the matplotlib plot() function.

      • -

    • x (int, str, or iterable, optional) – The column to be used for the x data. This can be a zero-based -index of the desired column or a column name from data header. -A special symbol “.” can be used for a sequential data index. -When not specified, use the first column.

      • -

    • y (int, str, iterable, or slice, optional) – One or more columns to be used for the y data. This can be -a single zero-based index of the desired column or an iterable -of several indices. The y value can be also a string which -is split at commas and converted to integers, column names -or slice objects, e.g. “0,sine,4:7”. The slice instances -are applied to the entire data block from each loaded file. -Use the second column when not specified.

      • -

    • log ({‘x’, ‘y’}, optional) – Set logarithmic scaling for the specified axis and linear scaling -for all others. For example, log="y" applies linear scaling -to the x-axis and logarithmic to the y-axis. Keep the current -axis scaling when not specified.

      • -

    • ax (matplotlib.axes.Axes, optional) – The axes to plot to. The plotting will be performed using the -ax.plot method. The default is pyplot.gca().

      • -

    • kwargs (misc, optional) – Keyword arguments for the matplotlib plot() function.

      • -
    -
    -
    Returns
    -

    lines (list) – The matplotlib Line2D objects added to the current axis.

    -
    -
    -
    -

    See also

    -

    diffpy.pdfgetx.loaddata()

    -
    -

    This function can be imported from the -diffpy.pdfgetx.plotdata module.

    -
    - -
    -
    -findfiles(patterns=(), path='.', dotfiles=False)
    -

    Find files that match all specified patterns.

    -

    Pattern syntax:

    -
      -

    • ^start - match “start” only at the beginning of the string.

      • -

    • end$ - match “end” only at the end of string.

      • -

    • <7> - match number 7 preceded by any number of leading zeros.

      • -

    • <1-34> - match an integer range from 1 to 34 inclusive.

      • -

    • <7-> - match an integer greater or equal 7.

      • -

    • <-> - match any integer.

      • -

    • + - start a new group of patterns to match more files.

      • -

    • dir/ - set search path effective from the current pattern group.

      • -
    -

    All integer ranges <N-M> above allow one or more leading zeros. -The range syntax does not support matching of negative numbers.

    -
    -
    Parameters
    -
      -

    • patterns (iterable of strings or str, optional) – String patterns that must all match in returned filenames. -Can be also a single string with patterns separated by -whitespace characters. When empty match all files in the -current directory or in the path. A single + starts -a new pattern group for additional matches. Each pattern -group may have one entry containing /, for example, -dir/ or ./, which sets the search directory for -this and subsequent pattern groups. When pattern group -contains only the path entry it reuses file patterns from -the previous group.

      • -

    • path (str, optional) – Directory to be searched for the files. The default is “.” -to search the current directory.

      • -

    • dotfiles (bool, optional) – When True search also the hidden “.” starting files. These -files are by default ignored, but can be explicitly selected -by adding the ^. pattern.

      • -
    -
    -
    Returns
    -

    filenames (list) – The list of matching filenames. Return all files when -patterns are not specified.

    -
    -
    -

    This function can be imported from the -diffpy.pdfgetx module.

    -
    - -
    - - -
    -
    -
    - -
    -
    -
    -

    Navigation

    - -
    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.1.1/intro.html b/static_root/doc/pdfgetx/2.1.1/intro.html deleted file mode 100644 index 151c31c6..00000000 --- a/static_root/doc/pdfgetx/2.1.1/intro.html +++ /dev/null @@ -1,176 +0,0 @@ - - - - - - Introduction — diffpy.pdfgetx 2.1.1 documentation - - - - - - - - - - - - - - - - - - - - - - -
    -

    Navigation

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    - - - -
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    -
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    - -
    -

    Introduction

    -

    diffpy.pdfgetx is a simple yet powerful software for converting X-ray or -neutron powder diffraction data to atomic Pair Distribution Functions -(PDFs). In addition, it also allows the extraction of PDFs from small-angle -scattering (SAS) data. The software includes three command line programs -PDFgetX3, PDFgetN3 and PDFgetS3 for processing X-ray, -constant-wavelength neutron and small-angle diffraction data -respectively. PDFgetX3, PDFgetN3 and PDFgetS3 can be used in a batch -mode to convert a series of data files without user intervention. The -programs can be also run in an interactive mode that allows to control -process parameters and plot the PDFs and any intermediate results. Users -can interactively tune the PDF processing parameters, visualize their effect on the results and adjust them to their optimum values. The programs are bundled with Python library diffpy.pdfgetx for PDF processing functions, which can be used in custom Python scripts.

    -
    -

    License notice

    -

    Use of this software is subject to and permitted only under a separate, -written Use License granted by Columbia University. If you or your employer -is not a party to such an agreement, then your use of this software is -prohibited. If you don’t know whether or not your anticipated use is under -a license, you must contact Prof. Simon Billinge at sb2896@columbia.edu. -Use of this software without a license is prohibited.

    -

    Copyright 2009-2020, Trustees of Columbia University in the City of New York.

    -

    For more information please email Prof. Simon Billinge at sb2896@columbia.edu

    -
    -
    -

    Authors

    -

    This code was written by members of the Billinge Group at -Columbia University and Brookhaven National Laboratory including -Pavol Juhás, -Timur Davis, -Chia-Hao (Timothy) Liu, -Christopher Wright, -Christopher Farrow, -Hung Vuong, -Songsheng Tao, -Simon Billinge.

    -
    -
    -

    References

    -

    If you use this program for a scientific research that leads -to publication, we ask that you acknowledge use of the program -by citing the following paper in your publication:

    -
    -

    P. Juhás and T. Davis, C. L. Farrow, S. J. L. Billinge -PDFgetX3: A rapid and highly automatable program for processing -powder diffraction data into total scattering pair distribution -functions, -J. Appl. Crystallogr. 46, 560-566 (2013)

    -
    -

    For research publications that use this software to process neutron -diffraction data we ask you to also cite:

    -
    -

    P. Juhás, J. N. Louwen, L. van Eijck, E. T. C. Vogt, -S. J. L. Billinge -PDFgetN3: atomic pair distribution functions from neutron -powder diffraction data using ad hoc corrections, -J. Appl. Crystallogr. 51 (2018)

    -
    -

    For research publications utilising the sasPDF utility, PDFGetS3, we ask you to acknowledge the use of the program by citing following paper in your publication:

    -
    -

    CH Liu, E. Janke, R. Li, P. Juhás, O. Gang, D. V. Talapin, S. J. L. Billinge -sasPDF: pair distribution function analysis of nanoparticle assemblies from small-angle-scattering data.

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    -
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    Navigation

    - -
    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.1.1/options.html b/static_root/doc/pdfgetx/2.1.1/options.html deleted file mode 100644 index 3c4c76a5..00000000 --- a/static_root/doc/pdfgetx/2.1.1/options.html +++ /dev/null @@ -1,663 +0,0 @@ - - - - - - Options and parameters — diffpy.pdfgetx 2.1.1 documentation - - - - - - - - - - - - - - - - - - - - - - -
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    Navigation

    - -
    - - - -
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    - -
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    Options and parameters

    -

    PDFgetX3, PDFgetN3 and PDFgetS3 are very flexible in allowing users to customize -the actions of the program. They have a number of parameters that can -be specified either in configuration file or as command line options. -Here is a complete description of the parameters and options used by -either program.

    -
    -

    Note

    -

    The command line options start with a leading “-” and can -be only used as command line arguments when starting the -pdfgetx3 program. Within configuration file the parameter -names are plain words without any leading dashes. Finally, -parameters can be also set in the interactive mode as attributes of -the config object, but the assignments must be valid -Python statements. Here are examples of setting composition of -a processed specimen using each of these forms:

    -
      -

    1. assigned in configuration file:

      -
      ...
-composition = CaTiO3
-...
-
      -
      -
      2. -

    2. set as a command-line option when starting pdfgetx3 or -pdfgetn3:

      -
      pdfgetx3 --composition=CaTiO3
-
      -
      -
      3. -

    3. set in the IPython interactive mode:

      -
      pdfgetx3 -i
-...
-In [1]: config.composition = "CaTiO3"
-
      -
      -
      4. -
    -
    -
    -

    Program operation

    -
    -
    --h, --help
    -

    Display a brief usage information with a list of command line options -and exit.

    -
    - -
    -
    --V, --version
    -

    Display the program version and exit.

    -
    - -
    -
    ---manual
    -

    Open this manual in a Web browser and exit.

    -
    - -
    -
    --f, --find
    -
    - -
    -

    Select input files that match all patterns. The command -line arguments are by default taken as input files. However, -with the --find option they are processed as -file patterns and the matching files are then used as inputs. -The input files are by default searched in the current directory -unless there is a path entry (e.g., data/) that -selects a different search path. The search patterns are -interpreted as fixed strings, all of which must be present -in the file name. A single argument + starts -a new group of patterns to match more files that are not -covered by one set of patterns. Additional pattern -groups reuse the current search path unless they provide -their own path value. Pattern groups containing only -a path entry reuse file patterns from the last group. -When pattern groups overlap the repeated matches are ignored -to make the resulting list of files unique. Files starting -with . are ignored unless there is ^. pattern -that explicitly matches them. The search -syntax provides the following special patterns:

    - ---- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

    ^

    match at the beginning of the string, i.e., ^start -matches only filenames that start with “start”.

    $

    match at the end of string, for example, .chi$ selects -file names ending with “.chi”. A $ on its own -matches every string and can be used to select all files.

    <N>

    match number N preceded by any number of leading zeros, -e.g., <7> would match in “f7.chi”, “f007.chi”, but not -in “f77.chi”.

    <N-M>

    match an integer range from N to M inclusive. -The matched number may have one or more leading zeros.

    <7->

    match number 7 or larger.

    <-7>

    match number 7 or smaller.

    <->

    match any integer number.

    +

    start a new pattern group, for example, .chi$ + .dat$

    /

    set search path. An argument containing the / symbol -is taken as the search path, for example, data/ or -./. Each pattern group may provide its own search -path effective for that and any subsequent pattern group.

    -

    The ^$<> characters are often special to Unix or Windows -command shells, therefore they need to be enclosed in double -quotes (") when used on command line.

    -
    -

    See also

    -

    tutorial on matching input files

    -
    -
    -
    -
    --l, --list
    -

    List all input files and exit. This is useful with the ---find option to verify if input files -are matched as intended.

    -
    - -
    -
    -

    Configuration file options

    -
    -
    --c CONFIG, --config=CONFIG
    -

    Read custom configuration file after loading the default ones. -Do not load any configuration file when “NONE”.

    -
    - -
    -
    --s NAME, --section=NAME
    -

    Load the custom configuration file section [SectionName] after -loading the [DEFAULT] section. This is useful for creating -several configuration variants in a single configuration file.

    -
    - -
    -
    ---createconfig=FILE
    -

    Write template configuration to a new FILE and exit. Write -to the standard output when FILE is “-“.

    -
    - -

    See also the configuration file section -for further details.

    -
    -
    -

    Input and output options

    -
    -
    -inputfile
    -

    This parameter allows to specify one or more input files in the -configuration file, one file per line. The inputfile -is only used if no input files were provided on the -pdfgetx3 or pdfgetn3 command line.

    -
    - -
    -
    -dataformat
    -
    - -
    -
    ---format=FORMAT
    -

    Format of input files. Available formats are: twotheta, QA, -Qnm corresponding to a two-column text data where the first -column is either the scattering angle 2Θ in degrees, Q in -inverse ångströms or Q in inverse nanometers.

    -
    - -
    -
    -backgroundfile
    -
    - -
    -
    --b FILE, --background=FILE
    -

    Optional datafile with background intensities from an empty sample -holder. It must be in the same dataformat as other input files.

    -
    - -
    -

    Note

    -

    The following input is only used in sas mode.

    -
    -
    -
    -formfactorfile
    -
    - -
    -
    --ff FILE, --formfactorfile=FILE
    -

    Form factor intensities of the scatterers. This is required for sas mode. The form factor file is expected to be in two-column format with (Q, f2avg) data or three-column format with (Q, f2avg, favg2) data. The unit of Q is required to be A^-1.

    -
    - -
    -
    -datapath
    -
    - -
    -
    --d DATAPATH, --datapath=DATAPATH
    -

    One or more extra directories to be searched for input or -background data files. The -d option can be specified -several times to add more directories, these are prepended in front -of any default value. Within configuration file the datapath -directories have to be listed each on a separate line.

    -

    A special value “NONE” (or “none”) clears any previously defined -paths and only the further paths, if any, would be searched for -inputs.

    -
    - -
    -
    -output
    -
    - -
    -
    --o OUTPUT, --output=OUTPUT
    -

    Output file name, write to the standard output when “-“. The --t, --outputtypes option controls what results are -being saved. Normally the OUTPUT is used as a custom basename for -the output files. The OUTPUT may contain @f, @h, @r, @e, @t, @b, @o -tokens, which are expanded as follows:

    - ----- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

    token

    example

    definition

    @h

    dir1/dir2

    the input file directory or “.”

    @r

    dir1/dir2/filename

    the input path with extension removed

    @e

    dat

    the input file extension without “.”

    @t

    filename.dat

    the tail component of the input file

    @b

    filename

    the tail component with extension removed

    @o

    gr

    the output extension iq, sq, fq or gr

    -

    An empty value works the same as “@b.@o” and saves the data -in the current directory with a proper extension for the -saved results. When “@o” is not present in the OUTPUT, it is -appended as a default filename extension.

    -
    - -
    -
    -outputtypes
    -
    - -
    -
    --t TYPES, --outputtypes=TYPES
    -

    Result types to be saved, one or more comma separated values. -Supported values are “iq”, “sq”, “fq”, “gr”, corresponding to the -I(Q), S(Q), F(Q) and G(r) curves; these are also used as output -file extensions.

    -

    Result files are not written when empty, “none” or “NONE”.

    -
    - -
    -
    -force
    -
    - -
    -
    ---force=FORCE
    -

    Overwrite existing output files. By default the output -files are not written if they already exist. Possible values -in a configuration file are “true”, “yes”, “on”, “1” or -“false”, “no”, “off”, “0” or “once”. The special value “once” -permits one overwrite and then resets config.force to -False. Note that in interactive mode the values assigned -to config.force are converted to Python bool -unless equal to “once”.

    -
    - -
    -
    -

    PDF parameters

    -
    -
    -mode
    -
    - -
    -
    ---mode=STRING
    -

    The PDF conversion mode, i.e., the name of the -pdfgetter() setup. The available modes correspond -to the radiation type used in powder diffraction experiment and can -be “xray” or “neutron”.

    -
    - -
    -
    -wavelength
    -
    - -
    -
    --w FLOAT, --wavelength=FLOAT
    -

    X-ray wavelength in ångströms. This value is required -for the “twotheta” dataformat in order to convert the scattering -angles 2Θ to a momentum transfer Q. For other data formats -the wavelength is not necessary and may be left undefined.

    -
    - -
    -
    -twothetazero
    -
    - -
    -
    ---twothetazero=FLOAT
    -

    Position of the zero scattering angle in diffractometer degrees. -This parameter corrects for a constant offset in the -measured 2Θ values. When loading configuration file -it is assumed 0 unless specified otherwise. This parameter -is only effective for the “twotheta” dataformat.

    -
    - -
    -
    -composition
    -
    - -
    -
    ---composition=STRING
    -

    Chemical composition of the sample. Supported formats are -“PbTi0.5Zr0.5O3”, “Pb 1 Ti 1/2 Zr 1/2 O 3” or “CH3 (CH2)3 OH”. -Space characters are ignored, unit counts can be omitted, but it is -important to use a proper upper and lower case in atom symbols. -Elements can appear several times in the formula, e.g., “CH3 CH3”, -and the formula may contain parentheses or fractional -stoichiometries.

    -
    - -
    -
    -bgscale
    -
    - -
    -
    ---bgscale=FLOAT
    -

    Scaling of the background intensities loaded from the -backgroundfile, by default 1.

    -
    - -
    -
    -rpoly
    -
    - -
    -
    ---rpoly=FLOAT
    -

    r-limit for the maximum frequency in the F(Q) correction polynomial. -The PDF is unreliable at shorter r, however a -very small rpoly would disable polynomial correction and -give noisy PDF. -Larger values produce closer fits with a higher degree polynomial, -but when too large, they might smooth-out a useful signal in the -data. The default is 0.9.

    -
    - -
    -
    -qmaxinst
    -
    - -
    -
    ---qmaxinst
    -

    The Q cutoff for the meaningful input intensities in inverse -ångströms. Some data files may contain trailing zeros -or unreliable intensities at the upper bound of the detector range. -The qmaxinst defines a threshold for unreliable data. -The parameter is also used as an upper boundary for the polynomial -fit correction of the S(Q) data.

    -
    - -
    -
    -qmin
    -
    - -
    -
    ---qmin
    -

    The lower Q-limit for the Fourier transformation of the F(Q) curve -in inverse ångströms.

    -
    - -
    -
    -qmax
    -
    - -
    -
    ---qmax
    -

    The upper Q-limit for the Fourier transformation of the F(Q) curve -in inverse ångströms. This is essentially a limit, where sample -signal decays to the level of data noise.

    -
    - -
    -
    -rmin
    -
    - -
    -
    ---rmin=FLOAT
    -

    Lower bound of the r-grid for the calculated PDF in ångströms.

    -
    - -
    -
    -rmax
    -
    - -
    -
    ---rmax=FLOAT
    -

    Upper bound of the r-grid for the calculated PDF in ångströms.

    -
    - -
    -
    -rstep
    -
    - -
    -
    ---rstep=FLOAT
    -

    Spacing of the r-grid for the calculated PDF in ångströms.

    -
    - -
    -
    -

    Other parameters

    -
    -
    -plot
    -
    - -
    -
    --p TYPES, --plot=TYPES
    -

    Plot the specified results. A comma separated list with one or -more items from “iq”, “sq”, “fq”, “gr”. No plot is produced when -empty, “none” or “NONE”. Setting this option turns on the -interactive mode.

    -
    - -
    -
    -interact
    -
    - -
    -
    --i, --interact
    -

    Start an IPython interactive session after processing all files. -Useful for tuning the configuration parameters or interactive -plotting. This is always on when plot option has been set. -See also Interactive mode for further details.

    -
    - -
    -
    -verbose
    -
    - -
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    ---verbose=VALUE
    -

    Level of detail for the program to report about its actions. -Possible values are “error”, “warning”, “info”, “debug”, “all” or an -integer number from 0 to 5. Messages are completely suppressed when -0, all messages are printed when verbose is 5 (“all”) or higher. -This option is useful for diagnostics of any unexpected behavior -in the program.

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    Navigation

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    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.1.1/pdfgetxn3-examples.zip b/static_root/doc/pdfgetx/2.1.1/pdfgetxn3-examples.zip deleted file mode 100755 index fbac94df..00000000 Binary files a/static_root/doc/pdfgetx/2.1.1/pdfgetxn3-examples.zip and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.1.1/plotdata.html b/static_root/doc/pdfgetx/2.1.1/plotdata.html deleted file mode 100644 index 18cdf0b2..00000000 --- a/static_root/doc/pdfgetx/2.1.1/plotdata.html +++ /dev/null @@ -1,278 +0,0 @@ - - - - - - The plotdata program — diffpy.pdfgetx 2.1.1 documentation - - - - - - - - - - - - - - - - - - - - - - -
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    Navigation

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    The plotdata program

    -

    The PDFgetX3 software includes a simple stand-alone utility -plotdata for plotting text data files. In most cases -this program can be invoked from a command-shell as

    -
    plotdata file1.dat file2.dat
-
    -
    -

    which plots the numerical data from the text files file1.dat, -file2.dat together in a single graph. By default the first -column is used as an x variable and the second column is used for the -y values. After displaying the plot the program starts an IPython -interactive session allowing the user to modify or save plots. The -IPython session is initialized with the filenames variable -containing a list of plotted files. It also pre-loads the -plotdata() and findfiles() functions just as in PDFgetX3 -interactive session. The plotdata() -function works in a similar way as the plotdata program, -just its arguments need to be passed as Python function arguments -instead of command-line options. Thus an equivalent call of the -plotdata() function would be:

    -
    In [1]: plotdata(['file1.dat', 'file2.dat'])
-
    -
    -
    -

    Selecting files

    -

    The plotdata program includes a file searching feature -that is useful for selecting a set of files in large -directories. It is also convenient for Windows operating systems, -where the command prompt cannot do filename expansion for patterns -such as *.dat. The file search feature is controlled by the -following options:

    -
    -
    --f, --find
    -

    Use command line arguments as filename patterns and plot all matching -files. This option works in the same way as for -pdfgetx3, for full details see the -pdfgetx3 --find documentation. Note that -within command line the special patterns ^$<> need to be quoted -in double quotes (") so they are not processed by command shell.

    -
    - -
    -
    --l, --list
    -

    List the input files and exit. This is useful in conjunction -with the -f, --find option to check if data files -are selected as intended.

    -
    - -

    Assuming the current directory contains 20 files named -file1.dat, file2.dat, …, file20.dat, -the plotting of files 9 to 13 could be done (with a check listing) -as follows

    -
    $ plotdata -fl "<9-13>.dat"
-file9.dat
-file10.dat
-file11.dat
-file12.dat
-file13.dat
-$ plotdata -f "<9-13>.dat"
-
    -
    -

    Within an interactive IPython session the equivalent plot could be -produced by combining the plotdata() and findfiles() functions as

    -
    In [1]: plotdata(findfiles("<9-13>.dat"))
-
    -
    -
    -
    -

    Selecting x and y data

    -

    The plotdata program provides several ways of selecting -columns for x or y data and for specifying plot markers or line -formats. The columns can be specified using their integer index, -but one needs to keep in mind the index of the first column is “0” -as per Python indexing conventions. Here is a list of options -supported by the plotdata program (and function):

    -
    -
    --x X
    -

    index or name of the x-column to plot. See the -y option -for the supported syntax, but note that X may select only one -column. When set to “.” use the data-row index for x.

    -
    - -
    -
    --y Y
    -

    index or name of the y-column or columns to plot. The Y column -specification can be a comma separated list of indices, column names -or Python-like ranges, for example “1,2”, “G”, “1:4” (START:STOP, -same as “1,2,3”), “1:4:2” (START:STOP:STEP, same as “1,3”), or -“-2:” (same as “-2,-1”, i.e, the last 2 columns). Because column -indexing starts at “0” the second column must be specified as “1”.

    -

    The column names work if the data section in the file is preceded by -a headline of unique column names, for example:

    -
    x     square      cube
-1     1           1
-2     4           8
-3     9           27
-4     16          64
-
    -
    -

    For such data file the plotdata program will recognize column names -“x”, “square” and “cube” and an implicit “.” for row index.

    -
    - -
    -
    --s STYLE, --style=STYLE
    -

    optional plot format specification. See the -matplotlib.pyplot.plot() function -for a list of available formats.

    -
    - -
    -
    --L LOG, --log=LOG
    -

    axes to be plotted with logarithmic scaling, for example, “x”, “y” or -“xy”. Axes not listed in LOG will use linear scaling.

    -
    - -
    -
    --h, --help
    -

    display a brief usage info and exit.

    -
    - -
    -
    --V, --version
    -

    show program version and exit.

    -
    - -
    -
    ---manual
    -

    Open this manual page in a Web browser and exit.

    -
    - -
    -
    -

    Examples

    -

    The examples directory plotdata contains a sincos.dat -file that has 3-columns of values labeled as “x”, “sin” and “cos”. -Here are several examples of the plotdata capabilities -when used from command line - the user is encouraged to try them out:

    -
    plotdata sincos.dat
-plotdata -y 1,2 sincos.dat
-plotdata -x . -y 0:3 sincos.dat
-plotdata -y cos sincos.dat
-plotdata -x sin -y cos -sr-- sincos.dat
-
    -
    -

    An equivalent usage from a general IPython session would be:

    -
    ipython --matplotlib=auto
-In [1]: from diffpy.pdfgetx.plotdata import plotdata
-In [2]: plotdata('sincos.dat')
-In [3]: plotdata('sincos.dat', y=[1,2])
-In [4]: plotdata('sincos.dat', x='.', y=':3')
-In [5]: plotdata('sincos.dat', y='cos')
-In [6]: plotdata('sincos.dat', x='sin', y='cos', style='r--')
-
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    Navigation

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    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.1.1/quick-start.html b/static_root/doc/pdfgetx/2.1.1/quick-start.html deleted file mode 100644 index 123d446b..00000000 --- a/static_root/doc/pdfgetx/2.1.1/quick-start.html +++ /dev/null @@ -1,250 +0,0 @@ - - - - - - Quick-start guide — diffpy.pdfgetx 2.1.1 documentation - - - - - - - - - - - - - - - - - - - - - - -
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    Quick-start guide

    -

    This guide assumes that the software has been correctly installed and -its command line programs PDFgetX3, PDFgetN3 and PDFgetS3 can be -executed by typing pdfgetx3, pdfgetn3, or -pdfgets3 in a shell window. Please, refer to the installation section if this is not working yet.

    -
    -

    pdfgetx3 command

    -

    The pdfgetx3 program is a command-line application, therefore all -the input files and run-parameters are supplied either as command-line -arguments or through a configuration file. In general, the pdfgetx3 is -executed from a command shell as

    -
    pdfgetx3 [options] input1 input2 ... inputN
-
    -
    -

    The inputN stands for an input powder diffraction data. The -inputN file is a simple two-column text file, where the first -column corresponds to either the 2Θ diffraction angle, or a -momentum transfer, Q, in inverse nanometer or inverse ångström units. -The second column contains the corresponding X-ray intensities. The -input file may start with a header containing comments or metadata -related to the measurement. PDFgetX3 will ignore any text leading to a -long two-column section. The example input files in this manual were -created with the -FIT2D program using -its “chi” output format, thus we will also refer to them as “chi-files”. -A typical content of a “chi” file looks as folows:

    -
    Pt_bulk-00055.tif: 2-theta Scan
-2-Theta Angle (Degrees)
-
-       1465
- 2.0003892E-02  0.0000000E+00
- 6.0011677E-02  0.0000000E+00
- 1.0001946E-01  0.0000000E+00
- 1.4002724E-01  0.0000000E+00
- 1.8003502E-01  0.0000000E+00
- ...
-
    -
    -

    The command-line options are arguments that start with a dash “-” and -are used to specify run-parameters or modify the program behavior. The -options can be specified in a short form that consists of a dash and -a single character, or in a long, more descriptive format starting with -a doubled dash --. Options may require values. For short options, -the value may be joined to the option string, for example --w0.142774, while for the long options it has to be separated -with an equal sign, e.g., --wavelength=0.142774. Although -all the PDF calculation parameters can be passed as command line -options, it is often more convenient to set them in a configuration -file. When run parameter is present both in a configuration file and -as command-line option, the command-line value takes precedence. The -command-line options are all described in the Options and parameters section of -this manual. A brief summary of options can be also displayed by -executing

    -
    pdfgetx3 --help
-
    -
    -

    The best way of getting familiar with PDFgetX3 is to process -the example diffraction data described in the Tutorial. -In general, the first step is to create a commented configuration file pdfgetx3.cfg using:

    -
    pdfgetx3 --createconfig=pdfgetx3.cfg
-
    -
    -

    The configuration file can have any name, but it is preferable -to use either pdfgetx3.cfg or .pdfgetx3.cfg, -for these files are automatically loaded by PDFgetX3. All -other configuration files must be passed explicitly to the program -using the -c, --config option.

    -

    Open the pdfgetx3.cfg file in a text editor. The lines that -start with a hash mark # are comments and are not used. The lines -starting with a right brace [ denote sections in the configuration -file. The active lines are all formatted as -“NAME=VALUE”. Although PDFgetX3 has many options, in general only a few -of them are critical for the PDF calculation:

    -
      -

    • dataformat – specifies the input data format

      • -

    • wavelength – radiation wavelength in Å required for the -“twotheta” format.

      • -

    • composition – chemical composition of the sample

      • -

    • qmaxinst – upper Q boundary for a meaningful measurement -intensities.

      • -

    • qmax – Q-cutoff for the Fourier transformation that -yields the PDF.

      • -
    -

    Save the updated configuration file and run pdfgetx3 on the input data -FILENAME.chi as

    -
    pdfgetx3 --verbose=info -t gr FILENAME.chi
-
    -
    -

    Here the --verbose=info option makes pdfgetx3 -print -more information about its operation. This helps to verify -if the configuration file is indeed loaded and if the parameter -values are assigned as intended. The PDFgetX3 will not write -any output files unless told so. The -t gr option -tells the program to save the final G(r) curve as a -FILENAME.gr file in the working directory.

    -

    The saved .gr file contains a header with all the calculation -parameters and the input file name. The .gr file can be therefore -also used as a configuration file in order to redo the same -calculation

    -
    pdfgetx3 -c FILENAME.gr --plot=fq,gr
-
    -
    -

    Note this command does not include any .chi file and this will as -a result process the previously used input FILENAME.chi. -The --plot=fq,gr option tells PDFgetX3 to -display 2 plots for the reduced structure function F(Q) and the -final PDF G(r). The --plot option also implies an -interactive mode -therefore the program does not exit, but starts an -interactive IPython session. To exit the interactive mode, -type exit() and press Enter.

    -
    -
    -

    pdfgetn3 command

    -

    The pdfgetx3 and pdfgetn3 programs operate in a very similar fashion -apart from being set to assume X-ray and neutron data respectively. -The type of the scattering data can be also specified using the ---mode option. Running pdfgetn3 is nearly identical -to executing pdfgetx3 --mode=neutron. The only difference between -these commands is that pdfgetx3 checks for configuration files -pdfgetx3.cfg and .pdfgetx3.cfg, whereas -pdfgetn3 looks for pdfgetn3.cfg and .pdfgetn3.cfg.

    -
    -
    -

    pdfgets3 command

    -

    The pdfgets3 program is virtually the same as its counterparts for x-ray -(pdfgetx3) and neutron (pdfgetn3) diffraction data. The only difference -is that instead of referencing the well documented x-ray or neutron -scattering form factor data, a user-defined form factor data is used -for getting the PDF from a small-angle scattering (SAS) data. This -behavior is enabled by specifying mode = sas in the configuration -file or in the command line tool. The pdfgets3 program by default -searches for a configuration named pdfgets3.cfg and -.pdfgets3.cfg in order, when no configuration file is specified.

    -

    Please refer to the tutorial section for a step-by-step processing of the example data files and for demonstration of the capabilities in PDFgetX3, PDFgetN3 and PDFgetS3.

    -
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    Navigation

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    Release notes

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    -

    Version 2.1.1 - 2020-09-01

    -
    -

    Added

    -
      -

    • Support for Python 3.8

      • -
    -
    -
    -
    -

    Version 2.1.0 – 2020-07-15

    -
    -

    Added

    -
      -

    • New mode sas for processing Small Angle Scattering data and -for using custom scattering factors.

      • -

    • qmax-pushes-qmin coupling of sliders in the tuneconfig tool.

      • -

    • New program pdfgets3 and IPython magic %pdfgets3.

      • -
    -
    -
    -

    Changed

    -
      -

    • Software distribution format to a universal Python wheel.

      • -

    • tuneconfig dialog to access full Q-range with all qmin, qmax, and -qmaxinst sliders. Increased range for the rpoly slider.

      • -
    -
    -
    -

    Deprecated

    -
      -

    • Software distribution in setuptools egg package.

      • -
    -
    -
    -

    Removed

    -
      -

    • Support for Python 3.4.

      • -
    -
    -
    -

    Fixed

    -
      -

    • Support backslash in the --find option path argument on Windows. -Both forward and back slashes are allowed on Windows, but other -platforms must use forward slash.

      • -

    • Recipe for platform-dependent Anaconda package.

      • -

    • Bogus test failure when installed in symlinked directory.

      • -
    -
    -
    -
    -

    Version 2.0.0 – 2018-11-02

    -
    -

    Added

    -
      -

    • New mode neutron for processing constant-wavelength -neutron scattering data.

      • -

    • Correction for an offset of diffractometer zero angle.

      • -

    • Configuration parameter twothetazero and command-line option ---twothetazero for position of the actual zero angle -in diffractometer degrees.

      • -

    • New program pdfgetn3 and IPython magic %pdfgetn3.

      • -

    • Separate configuration file pdfgetn3.cfg for the pdfgetn3 program.

      • -

    • New sub-package diffpy.pdfgetx.apps for entry points to all programs.

      • -

    • Table of electron scattering factors from E. J. Kirkland, -Advanced Computing in Electron Microscopy.

      • -

    • The + operator for additive pattern groups when matching input files -with pdfgetx3 --find.

      • -

    • An optional slash-containing entry, e.g., dir/, to set the search path -for pdfgetx3 --find. Each pattern group may have one path entry which -affects the current and subsequent pattern groups. Pattern groups that -have only the path entry reuse the previous file patterns, for example, -dir1/ .dat$ + dir2/ + dir3/.

      • -

    • The dotfiles flag argument to functs.findfiles to also find -dot-starting files without an explicit pattern.

      • -

    • Support for Python 3.7.

      • -

    • Tutorial examples for constant-wavelength neutron diffraction data.

      • -
    -
    -
    -

    Changed

    -
      -

    • Initialization arguments of PDFConfig to set initial configuration values.

      • -

    • path argument of functs.findfiles to give one search path instead -of a list of paths.

      • -

    • pdfgetx3 --find to search only the current directory and stop searching -in --datapath.

      • -

    • Improved PDF accuracy by removing repeated Q-grid interpolation.

      • -

    • Handling of dot files by pdfgetx3 --find and the functs.findfiles -function. The dotfiles are by default ignored unless explicitly selected -by a "^." pattern.

      • -

    • Return type of functs.findfiles from IPython SList to a simple list.

      • -

    • Rename camel case interactive functions to lowercase, i.e., to loaddata, -processfiles, clearsession.

      • -

    • Use config.datapath lookup in processfiles(filename).

      • -
    -
    -
    -

    Deprecated

    -
      -

    • Function cromermann.felectronatq for electron scattering -factors calculation using Mott-Bethe approximate formula.

      • -

    • IPython extension module diffpy.pdfgetx.ipy_pdfgetx3. -Use diffpy.pdfgetx.ipy_magics instead.

      • -

    • Camel case functions loadData, processFiles, clearSession.

      • -
    -
    -
    -

    Removed

    -
      -

    • Support for Python 2.6.

      • -

    • Processing of environment variable PDFGETX3PATH.

      • -

    • Support for IPython 0.x.

      • -

    • Obsolete variable __gitsha__ from the version module.

      • -

    • Processing of command line options in PDFConfig class.

      • -

    • Implicit loading of configuration files in PDFConfig instantiation.

      • -
    -
    -
    -

    Fixed

    -
      -

    • Import of all objects from matplotlib.pyplot into -an interactive session started by plotdata.

      • -

    • Inaccurate G interpolation when rstep is comparable to pi / qmax.

      • -

    • Lone anchor patterns ^, $ to match everything.

      • -
    -
    -
    -
    -

    Version 1.2 – 2018-01-12

    -
    -

    Added

    -
      -

    • Support for Python 3.4, 3.5, 3.6 in addition to Python 2.6 and 2.7.

      • -

    • Support for IPython 5.0 with preserved -compatibility with IPython 0.10 and later.

      • -

    • Support for matplotlib 2.0.

      • -

    • New option --log=LOG for the plotdata program to set logarithmic -scale for either of x or y axis. The plotdata() function learnt -a new log argument with the same purpose.

      • -

    • New argument ax for the plotdata() function that select a specific -matplotlib axis for plotting.

      • -

    • Support for Unicode filenames and values in the config -interactive variable.

      • -

    • Processing of parentheses and fractional stoichiometries in chemical -formulas as in Pb (Ti Zr)1/2 O3.

      • -

    • Explanatory error message when PDFgetX3 was installed for -unsupported Python.

      • -
    -
    -
    -

    Changed

    -
      -

    • The egg package file was enhanced to support all Python -versions. The software is now distributed in a single -egg rather than multiple eggs per each Python version.

      • -

    • PDFgetX3 option --force to take a boolean argument -(yes, no, true, etc.) or once. The configuration -parameter force can be likewise set to a bool or to -a string "once". This enables a safer one-time -overwrite of existing output files.

      • -

    • Plot labels to use a proper Unicode “Å” (Ångström) symbols. -The “Å” symbol is also used within units in output files.

      • -

    • The usecols argument of the loadData() function to also -accept scalars, open-end slice objects and string-denoted -slices such as "1:3" or "1:".

      • -

    • The plotdata program and plotdata() function to accept -open-end slices for the y-columns selection.

      • -

    • The IPython magic function %pdfgetx3 to set the _exit_code -variable as do generic shell commands run from IPython.

      • -

    • Inline documentation to use NumPy-style Napoleon format, -which is human readable and can be included in the manual.

      • -

    • Release scripts to build software package bundles and -documentation in binary-reproducible way.

      • -
    -
    -
    -

    Deprecated

    -
      -

    • Compatibility with Python 2.6.

      • -

    • Support for IPython 0.x.

      • -

    • Variable __gitsha__ in the version module which was renamed -to __git_commit__.

      • -
    -
    -
    -

    Removed

    -
      -

    • The hold argument of the plotdata() function, -because it was deprecated in matplotlib.

      • -

    • Support for multiple x-columns in plotdata program and -plotdata() function.

      • -

    • Import of all objects from numpy module into the interactive -session. NumPy is available under the np name instead.

      • -
    -
    -
    -

    Fixed

    -
      -

    • Avoid duplicate “.gr.gr” extension when pdfgetx3 is run -with option --output=f.gr.

      • -

    • Crash on loading custom configuration section from a local -file, when that section is missing in global configuration.

      • -

    • Missing checkbox in the tuneconfig dialog caused by matplotlib bug.

      • -
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    -
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deleted file mode 100644 index d20b361a..00000000 --- a/static_root/doc/pdfgetx/2.1.1/tutorial.html +++ /dev/null @@ -1,819 +0,0 @@ - - - - - - Tutorial — diffpy.pdfgetx 2.1.1 documentation - - - - - - - - - - - - - - - - - - - - - - -
    -

    Navigation

    - -
    - - - -
    -
    -
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    - -
    -

    Tutorial

    -

    In this tutorial we will convert several X-ray powder diffraction -patterns to corresponding PDFs. Open a terminal on a Unix-based system -or a Command Prompt on Windows and navigate to the examples -folder included with the PDFgetX3 distribution. The examples -folder can be found in the parent “doc” directory relative to this -document or another option is to just search your file system for -one of the input files mentioned below. -The example files are also available at -https://www.diffpy.org/doc/pdfgetx/2.1.1/pdfgetxn3-examples.zip.

    -
    -

    Nickel X-ray PDF

    -
    -

    predefined configuration file

    -

    Change to the Ni directory. The file named -ni300mesh_300k_nor_1-5.chi contains powder X-ray data -measured from nickel at the Advanced Photon Source beamline -6ID-D. The file contains two columns for the 2Θ scattering -angles and X-ray intensities. The second file -kapton_bgrd_300k_nor_2-3.chi contains the background -measurement, i.e., the intensities from an empty capillary. -Finally, the pdfgetx3.cfg contains a complete configuration -parameters for converting the powder pattern to a PDF. Since all -processing parameters are already defined in the configuration file, -the first PDF calculation is very simple and involves running the -pdfgetx3 program -with the powder data file as an argument:

    -
    $ pdfgetx3 ni300mesh_300k_nor_1-5.chi
-
    -
    -

    For the first run there should be no output on the screen, -however a new file, ni300mesh_300k_nor_1-5.gr should appear -in the work directory. -We can use the plotdata program, -included with this software, to plot the output data:

    -
    $ plotdata ni300mesh_300k_nor_1-5.gr
-
    -
    -

    This will open a graph window and start an IPython interactive session. -To exit and close the figure, type exit() on the IPython prompt. -Let’s run the program again, but now with a ---verbose=info -option, to show more details about the program actions.

    -
    $ pdfgetx3 --verbose=info ni300mesh_300k_nor_1-5.chi
-
-INFO:applying pdfgetx3 defaults
-INFO:set config.mode = xray
-INFO:searching for default config file /home/user/.pdfgetx3.cfg
-INFO:searching for default config file .pdfgetx3.cfg
-INFO:searching for default config file pdfgetx3.cfg
-INFO:loaded default config file pdfgetx3.cfg
-INFO:reset config.twothetazero = 0.0
-INFO:parsing config file section [DEFAULT]
-INFO:set config.dataformat = twotheta
-INFO:set config.backgroundfile = kapton_bgrd_300k_nor_2-3.chi
-INFO:set config.outputtypes = gr
-INFO:set config.wavelength = 0.142774
-INFO:set config.composition = Ni
-INFO:set config.qmaxinst = 26.5
-INFO:set config.qmax = 26.0
-INFO:set config.rmin = 0.0
-INFO:set config.rmax = 30.0
-INFO:set config.rstep = 0.01
-INFO:finished parsing config file
-INFO:processing command line options
-INFO:set config.verbose = info
-INFO:finished with command line options
-INFO:using 1 input files from the command line.
-INFO:configuring PDFGetter mode 'xray'
-INFO:calling config_xray
-INFO:started PDF processing.
-INFO:processing 'ni300mesh_300k_nor_1-5.chi'
-INFO:resolved output file '' as 'ni300mesh_300k_nor_1-5.gr'
-WARNING:ni300mesh_300k_nor_1-5.gr already exists.
-WARNING:Use "--force=yes" or "--force=once" to overwrite.
-INFO:elapsed time: 0.095
-
    -
    -

    Here we can see what configuration files are searched, which of them -get loaded and what are the effective values of the processing -parameters. Unless the --verbose option is in effect, the -program will show only messages that have either WARNING or ERROR -importance. The warning line above indicates no output has been -written, because that file already exists. This safety check can be -overruled with the --force=yes option, upon -which pdfgetx3 would overwrite any existing files.

    -

    PDFgetX3 output files start with a header that lists all the processing -parameters and can be used as a valid configuration file with the --c option. Another option, --plot=[iq,sq,fq,gr] turns on plotting of the final PDF or of some other result. A -side effect of the --plot option is that pdfgetx3 starts in -an interactive mode, so the user can manipulate or save the plots. To -put it all together, we are now going to redo the original PDF and plot -its reduced total scattering function F(Q) and the PDF curve G(r). This -time the chi file is not necessary, because the input file is already -listed in the gr file that is now used as a custom configuration:

    -
    $ pdfgetx3 -c ni300mesh_300k_nor_1-5.gr --plot=fq,gr
-
-WARNING:ni300mesh_300k_nor_1-5.gr already exists.
-WARNING:Use "--force=yes" or "--force=once" to overwrite.
-
-Variables related to PDF processing:
-
-pdfgetter    -- PDFGetter used for calculation.
-config       -- configuration data used by PDFGetter.
-                See config.inputfiles for a list of inputs.
-iraw         -- matrix of input raw intensities with 2 rows per file.
-iq sq fq gr  -- intermediate results per each input file stored
-                as matrix rows.
-
-Functions:
-
-tuneconfig   -- dynamically tune configuration variables.
-processfiles -- process specified data files.
-clearsession -- clear all elements from the inputfiles, iraw,
-                iq, sq, fq and gr variables.
-plotdata     -- plot all or selected columns from a text data file.
-loaddata     -- load all or selected columns from a text data file.
-findfiles    -- search for files matching the specified patterns.
-
-Use "%pdfgetx3" for a fresh run without exiting IPython.
-In [1]:
-
    -
    -

    This will open a plot figure similar to

    -_images/nickelfqgr.png -

    Because of the interactive mode implied by plotting, -the program enters an IPython session. -The IPython environment is preloaded with several extra functions -and variables related to the PDF processing. For example, the -config variable stores all the configuration parameters, -and its content can be displayed with the print() -function as

    -
    In [1]: print(config)
-
-configfile = ni300mesh_300k_nor_1-5.gr
-configsection = DEFAULT
-dataformat = twotheta
-...
-qmax = 26.0
-...
-
    -
    -

    The processfiles() function allows to redo the -whole calculation and plotting process for additional input files or -for new parameter values. To plot the F(Q) and G(r) -curves calculated at Qmax = 22 Å-1, we can call -processfiles() and pass it a keyword argument for -the new qmax as follows:

    -
    In [2]: processfiles(qmax=22)
-
-# the qmax parameter was updated to a new value, thus
-In [3]: config.qmax
-Out[3]: 22
-
    -
    -

    There should be now two lines in each plot axis corresponding to -the results at Qmax equal 26 and 22 Å-1. To exit the program, -type exit().

    -
    -
    -

    processing from scratch

    -

    We have already encountered the command-line option -c -for specifying a custom configuration file. A special argument “NONE”, -will make pdfgetx3 ignore any configuration files and start up in a -default state. We can use this feature to process the nickel PDF as if -we did not have any configuration file:

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi
-
-WARNING:Nothing to do, use "-t" or "--plot" options.
-ERROR:Configuration error: wavelength not specified.
-ERROR:See "--help" for more hints.
-
    -
    -

    There is an error, for the wavelength is necessary to convert -the scattering angle 2Θ to momentum transfer Q. The -X-ray wavelength was 0.142774 Å, which can be passed with the --w, --wavelength option:

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774
-
-...
-ERROR:Configuration error: Chemical composition not known.
-ERROR:See "--help" for more hints.
-
    -
    -

    There is still an error. The PDF calculation needs an average -X-ray scattering factor of the material, which is obtained from -sample chemical composition. The composition can be specified -with the --composition option. The example -below uses a “\” character to indicate the command continues -on the next line. Such syntax works in Unix terminals, but -on Windows the command has to be typed all on a single line:

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \
-           --composition=Ni
-
-WARNING:Nothing to do, use "-t" or "--plot" options.
-...
-
    -
    -

    There was no error message this time, but the program complains -about a lack of action. The pdfgetx3 program does not write any results -unless instructed by the -t, --outputtypes option. -The outputtypes option recognizes the following result types: -“iq”, “sq”, “fq”, “gr”. One or more of these type strings, -separated by a comma, can be included with the --t option, which will produce the corresponding -output files. An empty string, such as -t "", or -t NONE -may be used to clear any outputtypes defined in the configuration file, -and avoid the unseemly file-exists warnings.

    -

    At this point, we will not write any output files, but will use the ---plot option to display the calculated curves. The ---plot accepts the same arguments as outputtypes, so to -display the F(Q) and G(r) curves we shall run

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \
-           --composition=Ni --plot=fq,gr
-
-WARNING:qmaxinst reset to last nonzero point qmaxinst=28.0865680161
-WARNING:qmax reset to the data boundary qmaxinst=28.0865680161
-
    -
    -

    which should open the following plot window:

    -_images/nickelfqgrnoisy.png -

    The graphs look terrible. The PDF is very noisy and the F(Q) curve -shows a sudden break at about 27 Å-1. What happened? The powder -intensities are inaccurate at a very top of the detector angular range. -The interactive session is setup with -iraw, iq, sq, -fq, gr -variables for the original raw data and intermediate results. We -are going to plot the “iq” variable that has the input intensities -resampled on the Q grid. The matplotlib function -clf() clears the figure, -the iq variable is a two-row matrix with Q and I rows, and the -axis() -function lets us zoom to a given range:

    -
    In [1]: clf()
-In [2]: plot(iq[0], iq[1])
-Out[2]: [<matplotlib.lines.Line2D at 0x3e20f50>]
-In [3]: axis([20, 29, 0, 3000])
-Out[3]: [20, 29, 0, 3000]
-
    -
    -

    The graph shows a sudden drop in the raw intensities at 27 Å-1. -The qmaxinst variable defines a Q cutoff for a meaningful -instrument intensities and, to be on a safe side, we are going to set -it to 26.5 Å-1

    -
    In [4]: processfiles(qmaxinst=26.5)
-WARNING:qmax reset to the data boundary qmaxinst=26.5
-
    -
    -

    The updated curves looks reasonable without any oscillations and -breakpoints. The tuneconfig() function provides a -GUI-driven way for visualizing the processing parameters and their -effect on the results. Type tuneconfig() to execute the function, -which should open a new window with several sliders. Try to move -different sliders and see how do the F(Q) and G(r) curves change. -The rpoly parameter controls the degree of data-correction -polynomial and is an approximate low-r bound of reliable G -values. Once the parameters are tuned, they may be set to -exact values. We will also turn on the writing of the G(r) -curve and save it to an output file nicmd.gr:

    -
    In [14]: config.qmax = 26
-In [15]: config.outputtypes = 'gr'
-In [16]: config.output = 'nicmd'
-In [17]: processfiles()
-
    -
    -
    -
    -
    -

    Platinum X-ray series

    -

    PDFgetX3 has been designed to handle large series of data files. -With the fast area-detectors it is easy to measure hundreds of X-ray -patterns in a time or temperature series. Normally, these input -files need to be entered as command line arguments to the pdfgetx3 -program. This is usually no problem with Unix-like shells, which -expand filename patterns to a list of matching files. -However, such file generation is in general not available on Windows. -The input file names tend to include scan numbers which are useful -for selecting desired data, yet even with Unix shells it is -difficult to match a range of scan numbers -(z-shell being a notable exception).

    -
    -

    matching input files

    -

    The pdfgetx3 program includes a built-in function for finding -a set of input files. The command line arguments are normally taken as -input file names. However, if the -f, --find option is -present, the arguments are understood as patterns and the program looks -for files that match ALL of them. Another option --l, --list makes pdfgetx3 print out the matching files -without any other action, which can be used to verify if the patterns -match intended files.

    -

    We will try out this file search on platinum example files. Open a -terminal and navigate to the Pt directory. There should be a -series subdirectory with 6 chi files indexed from 903 to 908. -At first, let’s stay in the Pt directory and run the following -command

    -
    $ pdfgetx3 --list --find
-
-Pt_bulk-00055-pdfgetx2.gr
-Pt_bulk-00055-pdfgetx3.gr
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-pdfgetx3.cfg
-plotpdfcomparison.py
-
    -
    -

    Without any patterns the file search matches all files in the current -directory. Now let’s try to add name patterns. There are few special -patterns, for example ^ matches at the beginning of the filename, $ at the end and <N-M> matches a range of integer values from -N to M. The patterns containing ^$<> need to be quoted as -these characters have special meaning in the shell. Here are some -examples how it works.

    -

    Filenames containing “y”:

    -
    $ pdfgetx3 --list --find y
-empty_capillary-00032.chi
-plotpdfcomparison.py
-
    -
    -

    Filenames that containing both “y” and “chi”, here we use the -options --list and --find in an abbreviated -form -l and -f:

    -
    $ pdfgetx3 -lf y chi
-empty_capillary-00032.chi
-
    -
    -

    Filenames that start with “e”:

    -
    $ pdfgetx3 --list --find "^e"
-empty_capillary-00032.chi
-
    -
    -

    Filenames that contain character “2”:

    -
    $ pdfgetx3 --list --find 2
-Pt_bulk-00055-pdfgetx2.gr
-empty_capillary-00032.chi
-
    -
    -

    Filenames that contain numeric value “2”:

    -
    $ pdfgetx3 -lf "<2>"
-Pt_bulk-00055-pdfgetx2.gr
-
    -
    -

    The special argument + starts a new group of patterns to -generate extra files when they cannot be all covered by -a single set of patterns. For example, to match files that -contain contain both “bulk” and “chi” substrings and then -also those that have “empty” and “chi” in their names, use:

    -
    $ pdfgetx3 -lf bulk chi + empty chi
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-
    -
    -

    When pattern groups overlap the resulting matches are -made unique and each file is listed only once

    -
    $ pdfgetx3 -lf bulk chi + chi
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-
    -
    -
    -
    -

    data search path

    -

    Each group of PDFgetX3 patterns can have one entry containing -forward slash “/” to specify a non-current path that is searched -for input files. The path specification affects the current and -the following pattern groups unless they provide their own path. -The chi files numbered “903” to “905” and “908” from the -series subdirectory can be therefore matched using

    -
    $ pdfgetx3 -lf series/ "<903-905>" + 908
-series/Pt_bulk_ramp03-00903.chi
-series/Pt_bulk_ramp03-00904.chi
-series/Pt_bulk_ramp03-00905.chi
-series/Pt_bulk_ramp03-00908.chi
-
    -
    -

    The current directory can be selected using ./

    -
    $ pdfgetx3 -lf series/ 903 + ./ bulk chi
-series/Pt_bulk_ramp03-00903.chi
-Pt_bulk-00055.chi
-
    -
    -

    When additional pattern groups contain only the path -argument, they reuse the existing set of patterns. The -“.chi”-ending files in the current and series -directories can be thus found using

    -
    $ pdfgetx3 -lf ".chi$" + series/
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-series/Pt_bulk_ramp03-00903.chi
-series/Pt_bulk_ramp03-00904.chi
-series/Pt_bulk_ramp03-00905.chi
-series/Pt_bulk_ramp03-00906.chi
-series/Pt_bulk_ramp03-00907.chi
-series/Pt_bulk_ramp03-00908.chi
-
    -
    -
    -
    -

    output file names

    -

    By default the output files are saved in the current directory. The -output path, can be changed with the -o, --output option. -The -o recognizes several tokens that are replaced with -parts of the input file name, for example, “@b” expands to an -extension-stripped base name. In similar faction, “@o” is replaced -with the output type extension. Thus to generate PDFs for all files -in the series directory and save them in the -series-gr subfolder do

    -
    $ pdfgetx3 --find series/ "<900-910>.chi" --output=series-gr/@b.@o
-
    -
    -

    The extension “.@o” is automatic when not included anywhere in the -output file name. Thus to process the Pt series at Qmax = 18 Å-1 -while saving the results in the same folder, but with a “_qmax18” suffix -in their filenames do

    -
    $ pdfgetx3 --find series/ "<900-910>.chi" --qmax=18 -o series-gr/@b_qmax18
-
    -
    -

    For input file Pt_bulk_ramp03-00903.chi the -o option -above expands to output path series-gr/Pt_bulk_ramp03-00903_qmax18.gr. -The series-gr directory should now contain 12 “gr” files, -6 of them processed at Qmax = 27 Å-1 as given by configuration -file and 6 others processed at Qmax = 18 Å-1.

    -
    -

    See also

    -

    -o, --output for a list of output tokens

    -
    -
    -
    -
    -

    Interactive tuning of parameters

    -

    One of the most powerful features of PDFgetX3 is the ability to tune -PDF processing parameters in an interactive mode and immediately -visualize their effect on the results. To demonstrate this feature, -navigate to the Ni directory in the shell and process -the nickel PDF while plotting the F(Q) and G(r) curves. -Because of plotting the program will open an interactive IPython -session. The tuning mode can be then entered by calling the -tuneconfig() -function from the IPython environment

    -
    $ pdfgetx3 --plot=fq,gr ni300mesh_300k_nor_1-5.chi
-...
-In [1]: tuneconfig()
-
    -
    -

    The -tuneconfig() -function will by default add a second set of live lines -for the plotted curves and open a GUI dialog with sliders for the -tunable process parameters. Changing any slider would immediately -recalculate the PDF and update live lines in the plot.

    -_images/tunenickelfqgr.png -

    The constant data scale check-box rescales the result curves to a -constant maximum value. This is useful for assessing if a parameter -change produces different curve shape or if it just rescales the -results. The tunable parameters are described in the -PDF parameters section. -Only the active parameters are displayed in the tuneconfig GUI, -thus there would be no slider for the bgscale parameter -if PDF has been processed without any background data.

    -

    By default the -tuneconfig() -function displays the same curves as -specified by the --plot option, however it can be -configured to show arbitrary intermediate results or even visualize -selected steps in the PDF processing. We shall demonstrate this by -showing a live-plot of the polynomial correction together with the final -PDF. At first, we shall use the describe() method of the -pdfgetter() object to print out the chain of -transformations involved in the PDF processing and obtain a reference to -the transformation object t4 that applies the polynomial correction. -The transformation object can be then included in a list of plot -identifiers that are passed to the tuneconfig() function

    -
    $ pdfgetx3 -i ni300mesh_300k_nor_1-5.chi
-...
-Use "%pdfgetx3" for a fresh run without exiting IPython.
-
-In [1]: fig, ax = subplots(2)
-In [2]: pdfgetter.describe()
-0   TransformTwoThetaToQA
-    convert x data from twotheta to Q in 1/A
-1   TransformQGridRegular
-    Remove the data outside the (qmin, qmaxinst) range
-2   TransformBackground
-    subtract background intensity
-3   TransformXrayASFnormChris
-    scale and normalize intensities by x-ray scattering factors
-4   TransformSQnormRPoly
-    Normalize S(Q) by fitting a polynomial
-5   TransformSQToFQ
-    Convert S(Q) to F(Q).
-6   TransformFQgrid
-    Resample F(Q) to a regular grid suitable for FFT
-7   TransformFQToGr
-    Convert F(Q) to G(r).
-In [3]: t4 = pdfgetter.getTransformation(4)
-In [4]: tuneconfig([t4, 'gr'], axeslist=ax)
-In [5]: ax[0].legend(loc=2)
-
    -
    -

    The subplots() function above -is to create a new figure with 2 axes on top of each other. -Overall, the code above should display the following plot -and a GUI window:

    -_images/tunenickelt4gr.png -

    The tuning can be finished by clicking the Done button or closing the -tuneconfig GUI window. The parameter values can be thereafter adjusted -to a rounded values by setting an attribute of the config -object, for example:

    -
    In [5]: config.bgscale = 1.5
-
    -
    -

    Finally, to save the new results, we shall first confirm -outputtypes have been correctly set and then use the -processfiles() function to redo the calculations, plots and -data output for the updated configuration. Note that the -processfiles() function accepts keyword arguments for -configuration parameters. This is used at line In [8] to -turn on the force flag and is in effect a shortcut -for an extra config.force = True statement.

    -
    In [6]: config.outputtypes
-Out[6]: ['gr']
-In [7]: processfiles()
-WARNING:ni300mesh_300k_nor_1-5.gr already exists.
-WARNING:Use "--force=yes" or "--force=once" to overwrite.
-In [8]: processfiles(force=True)
-
    -
    -

    ni300mesh_300k_nor_1-5.gr was successfully saved at an -updated configuration for there were no warnings after the last call.

    -
    -
    -

    Neutron PDF

    -

    This example illustrates PDF extraction from -neutron powder data using pdfgetn3. -Navigate to the n-Sapphire directory in the shell. -The sapphire755.dat file contains powder diffraction data from -sapphire (α-Al2O3) -measured at the constant-wavelength PEARL instrument -at the Delft University of Technology. -The pdfgetn3.cfg configuration file specifies -processing parameters such as wavelength, -twothetazero, composition, and mode.

    -

    To extract the sapphire neutron PDF run

    -
    $ pdfgetn3 --verbose=info sapphire755.dat
-
-INFO:applying pdfgetn3 defaults
-INFO:set config.mode = neutron
-INFO:searching for default config file /home/user/.pdfgetn3.cfg
-INFO:searching for default config file .pdfgetn3.cfg
-INFO:searching for default config file pdfgetn3.cfg
-INFO:loaded default config file pdfgetn3.cfg
-INFO:reset config.twothetazero = 0.0
-INFO:parsing config file section [DEFAULT]
-INFO:set config.dataformat = twotheta
-INFO:set config.backgroundfile =
-INFO:set config.outputtypes = fq, gr
-INFO:set config.mode = neutron
-INFO:set config.wavelength = 1.0989
-INFO:set config.twothetazero = -0.38
-INFO:set config.composition = Al2O3
-INFO:set config.qmaxinst = 11.2
-INFO:set config.qmax = 11.2
-INFO:set config.rmin = 0.0
-INFO:set config.rmax = 20.0
-INFO:set config.rstep = 0.01
-INFO:finished parsing config file
-INFO:processing command line options
-INFO:set config.verbose = info
-INFO:finished with command line options
-INFO:using 1 input files from the command line.
-INFO:configuring PDFGetter mode 'neutron'
-INFO:calling config_neutron
-INFO:started PDF processing.
-INFO:processing 'sapphire755.dat'
-INFO:resolved output file '' as 'sapphire755.fq'
-INFO:written outpufile sapphire755.fq
-INFO:resolved output file '' as 'sapphire755.gr'
-INFO:written outpufile sapphire755.gr
-INFO:elapsed time: 0.097
-
    -
    -

    This will produce two files sapphire755.fq, sapphire755.gr -for the F(Q) and G(r) functions. -To compare them with expected results use

    -
    $ plotdata sapphire755-expected.fq sapphire755.fq
-$ plotdata sapphire755-expected.gr sapphire755.gr
-
    -
    -
    -
    -

    Fit twothetazero

    -

    For a good quality PDF it is essential to use powder patterns with -accurate values of Q. Some instruments may produce spectra with -a slightly offset scattering angle 2Θ which -causes inaccurate Q and a noticeably worse PDF. -In this example we fit a constant-wavelength neutron PDF from nickel -together with the twothetazero correction parameter for -diffractometer offset. -The procedure can be used to calibrate the zero correction from -a standard sample and then use it for subsequent PDF extractions. -The protocol can be also applied to fit zero correction in -a full-fledged PDF refinement in case -the zero offset may change for different samples.

    -

    This tutorial requires either Linux or Mac OS X platforms, -because the PDF fitting is conducted with -diffpy.cmi, -which is not yet available for Windows. -If diffpy.cmi is not yet installed, -we recommend to use Anaconda Python and set up a dedicated -Anaconda environment nbcmi for this tutorial. -This can be accomplished using the following steps:

    -
    $ conda create -n nbcmi -c diffpy python=2 diffpy.cmi
-$ conda activate nbcmi
-$ pip install path/to/diffpy.pdfgetx-VERSION.whl
-
    -
    -

    When these prerequisites are in place, -change to the n-twothetazero-fit directory -and open the self documented Jupyter notebook as follows

    -
    $ jupyter notebook fit-twothetazero.ipynb
-
    -
    -

    The notebook sets up and executes several PDF refinements and -compares the results from fits on uncorrected data and with -a fitted twothetazero. -After running all cells the notebook should produce similar graphs -as in the figure below.

    -
    -_images/twothetazerofit.svgz

    Refinement of nickel neutron PDF for (a) uncorrected data -and (b) with a refined zero correction. -The extracted PDFs are plotted as blue circles, -simulated PDFs as red lines and -the difference is plotted offset in green below.

    -
    -

    The final refined zero offset in the notebook should be approximately -0.36°. -The correction produces experimental PDF with a remarkably better fit -residual Rw which is lowered from (a) 0.18 to (b) 0.05.

    -
    -
    -

    Small-angle-scattering PDF (sasPDF)

    -

    Here we illustrate how to extract a PDF from small-angle-scattering (sas) data using pdfgets3. -To do this, navigate to the Au_DNA_NPA directory in your terminal. -In this folder, you will find Au_DNA_NPA.chi and -Au_DNA_FF.chi files which correspond to diffraction data from -DNA-capped Au nanoparticle assemblies and from a DNA-capped Au -nanoparticle colloidal solution respectively. Those two files were -measured at X21 beamline, NSLS and published in D. Nykypanchuk, M. M. -Maye, D. van der Lelie, and O. Gang, Nature 451, 549 (2008).. We thank Prof. Oleg Gang (Columbia University) for sharing this data. The pdfgets3.cfg -configuration file specifies processing parameters such as formfactorfile (required by sas mode), qmin, qmax, and mode.

    -

    To extract the PDF of DNA-capped DNA nanoparticle assemblies

    -
    $ pdfgets3 --verbose=info Au_DNA_NPA.chi
-
-INFO:applying pdfgets3 defaults
-INFO:set config.mode = sas
-INFO:searching for default config file /home/user/.pdfgets3.cfg
-INFO:searching for default config file .pdfgets3.cfg
-INFO:searching for default config file pdfgets3.cfg
-INFO:loaded default config file pdfgets3.cfg
-INFO:reset config.twothetazero = 0.0
-INFO:parsing config file section [DEFAULT]
-INFO:set config.dataformat = QA
-INFO:set config.backgroundfile =
-INFO:set config.datapath = []
-INFO:set config.formfactorfile = Au_DNA_FF.chi
-INFO:set config.output =
-INFO:set config.outputtypes = fq, gr
-INFO:set config.force = yes
-INFO:set config.mode = sas
-INFO:set config.rpoly = 240.605
-INFO:set config.qmaxinst = 0.075
-INFO:set config.qmin = 0.01
-INFO:set config.qmax = 0.072
-INFO:set config.rmin = 100.0
-INFO:set config.rmax = 5000.0
-INFO:set config.rstep = 1.0
-INFO:set config.plot = iq, fq, gr
-INFO:set config.verbose = info
-INFO:finished parsing config file
-INFO:processing command line options
-INFO:set config.verbose = info
-INFO:finished with command line options
-INFO:using 1 input files from the command line.
-INFO:configuring PDFGetter mode 'sas'
-INFO:calling config_sas
-INFO:started PDF processing.
-INFO:processing 'Au_DNA_NPA.chi'
-INFO:resolved output file '' as 'Au_DNA_NPA.fq'
-INFO:written outpufile Au_DNA_NPA.fq
-INFO:resolved output file '' as 'Au_DNA_NPA.gr'
-INFO:written outpufile Au_DNA_NPA.gr
-INFO:elapsed time: 0.947
-
    -
    -

    This will save two files Au_DNA_NPA.fq, Au_DNA_NPA.gr in the same directoy for the F(Q) and G(r) functions. This also plots F(Q) and G(r) functions in a pop-up window and the processing parameters such as rpoly or so may be tuned interactively by issuing command tuneconfig() in the IPython session as discussed above.

    -
    -
    - - -
    -
    -
    - -
    -
    -
    -

    Navigation

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The configuration file follows a simple "varname=value" syntax, -any lines starting with "#" are ignored as comments. - -The configuration file has several sections marked as ``[SECTIONNAME]``. -The ``[DEFAULT]`` section is mandatory and it contains the default -global settings. Any other sections are optional and they are applied -only when selected with the :option:`-s, --section <-s>` option on the -command line. Thus :: - - pdfgetx3 --config=test.cfg --section=nacl - -would read the parameters from the ``[nacl]`` section after reading the -defaults. Having several sections in the configuration -file is useful when there are multiple measurements that share most of -the parameters, but differ in a few of them, for example in chemical -composition. The configuration file can then contain sections per each -sample that define only the composition, while all other parameters are -specified just once in the global DEFAULT section. - - -Input files ------------------------------------------------------------------------- - -PDFgetX3 and PDFgetN3 accept input powder diffraction data -in the form of two-column text file, -where the first column x is either the scattering angle -|twotheta| in degrees, momentum transfer *Q* in inverse nanometers or *Q* -in inverse ångströms. The second column y contains the corresponding -scattered intensities normalized per unit solid angle. The actual type -of the x-values is identified by the :confval:`dataformat` parameter. -The input files may contain header with comments or metadata, and the -actual data are read from the first long section of numerical values. - -The input files are usually passed as command-line arguments to -:program:`pdfgetx3` or :program:`pdfgetn3` programs and must be paths -accessible from the current working directory. - -Input files can be also defined by setting the :confval:`inputfile` -value in the configuration file. The :option:`-d, --datapath <-d>` -option can be then used to provide additional data directories to -search for these inputs and for the :confval:`backgroundfile`. -This is to support configuration files located in a different -directory than the data. - -When the :option:`--find <-f>` option is active, the pdfgetx3 arguments -are understood as filename patterns and the input files are found -in the current or specified directory. - - -Output files ------------------------------------------------------------------------- - -PDFgetX3 and PDFgetN3 can produce up to four different output data files: - -* .iq -- |IQ|, the background-corrected - intensities sampled on a regular *Q*-space grid in inverse ångströms, - -* .sq -- |SQ|, the total scattering structure function, - with intensities normalized by average scattering factors and - corrected by a polynomial fit, - -* .fq -- |FQ|, the reduced structure function equal to *Q*\ (|SQ| - 1), - -* .gr -- |Gr|, the resultant PDF, where the first column is the - separation *r* in ångströms and the second is the function *G* in - Å\ :sup:`-2`. - -You can specify what output files should be produced by setting the -:confval:`outputtypes` parameter in the configuration file or by -passing the :option:`-t, --outputtypes <-t>` on the command line. - -The header of all output files contains the parameter values that were -used in the calculation and thus it is by itself a valid configuration -file. When passed as an argument to the :option:`--config <-c>` option, -the PDFgetX3 will reproduce the previous calculation. diff --git a/static_root/doc/pdfgetx/2.1.2/_sources/index.rst.txt b/static_root/doc/pdfgetx/2.1.2/_sources/index.rst.txt deleted file mode 100644 index c7bf373e..00000000 --- a/static_root/doc/pdfgetx/2.1.2/_sources/index.rst.txt +++ /dev/null @@ -1,38 +0,0 @@ -.. PDFgetX3 documentation master file, created by - sphinx-quickstart on Tue Sep 21 18:35:11 2010. - You can adapt this file completely to your liking, - but it should at least contain the root `toctree` directive. - -######################################################################## -diffpy.pdfgetx -######################################################################## - -User manual for PDFgetX3, PDFgetN3, PDFgetS3 and Python package diffpy.pdfgetx. - -| Release |release| -| |today| - -======================================================================== -Table of contents -======================================================================== - - -.. toctree:: - :maxdepth: 2 - - intro - install - quick-start - tutorial - files - interact - options - plotdata - release - -======================================================================== -Indices -======================================================================== - -* :ref:`genindex` -* :ref:`search` diff --git a/static_root/doc/pdfgetx/2.1.2/_sources/install.rst.txt b/static_root/doc/pdfgetx/2.1.2/_sources/install.rst.txt deleted file mode 100644 index 483f1fa6..00000000 --- a/static_root/doc/pdfgetx/2.1.2/_sources/install.rst.txt +++ /dev/null @@ -1,146 +0,0 @@ -Installation -======================================================================== - -.. include:: abbreviations.txt - -Software requirements ------------------------------------------------------------------------- - -This software is written in Python programming language, therefore -you must have Python 3.8, 3.7, 3.6, 3.5 or 2.7 installed. In addition, -the following third-party Python libraries are also required: - -* pip - Python package installer -* setuptools - tools for installing Python packages -* six - Python 2 and 3 compatibility library -* NumPy - library for scientific computing with Python -* matplotlib - Python plotting library -* IPython - enhanced interactive Python shell - -Standard Python releases can be obtained from -https://www.python.org/downloads. -The third-party libraries can be found at the -`Python Package Index `__ -or using any Internet search engine. - -Another more convenient option is to obtain one of the science-oriented -Python distributions such as -`Anaconda Python`_, -`Enthought Canopy `_ or -`PythonXY `_, -These distributions already include all the necessary libraries, so the -required Python software can be all installed in one step. - -On Linux operating systems the third-party libraries are usually -included in a system software repository. For example on an -Ubuntu Linux computer the software dependencies can be all installed -with a single shell command :: - - sudo apt-get install \ - python3-pip python3-setuptools python3-six \ - python3-numpy python3-matplotlib ipython3 - -This may be, of course, as well accomplished using the GUI -driven Synaptic package manager. Other Linux -distributions may use different software management tools, -but the names of the necessary packages should be very similar -to those above. - -On Windows operating system, it may be necessary to add the -``C:\Python37`` directory and the scripts directory -``C:\Python37\Scripts`` to the system :envvar:`!PATH`. Some Python -distributions already do so as a part of their installation process. The -easiest way to check is to start the :program:`Command Prompt`, type -there ``python`` and see if this starts the Python interpreter. - -Alternately, if you want to run the diffpy.pdfgetx software with a specific version of Python, -we recommend using a virtual environment, such as ``conda``. For example, if you have Anaconda Python installed, -you can create a conda virtual environment to install the software as follow :: - - conda create --name pdfgetx_env python=3.8 numpy matplotlib ipython - -You can choose the name of the environment and python version as you desire. You can choose any of the -supported Python versions. Then, activate this environment and follow the instructions in the -next section to install the software :: - - conda activate pdfgetx_env - -Installation ------------------------------------------------------------------------- - -The diffpy.pdfgetx software is distributed as a Python wheel file, -which can be obtained from the -`Columbia Technology Ventures -`__. -Once all the required software is in -place, start the command prompt on Windows or a Unix terminal on Linux -or Mac, navigate to the directory that contains the wheel file and -execute the following command:: - - pip install ./diffpy.pdfgetx-VERSION.whl - -Here VERSION needs to be replaced to match the actual filename. It is -critical that pip installer is from a supported Python version otherwise -the program would not work. On Linux and Mac operating systems the installation may need to run with root user privileges, for example, by prepending ``sudo`` to the command line above. If root access is not available, use the ``pip install`` options :option:`!--user` or :option:`!--prefix` to install the software to a user-writable directory. - -The package provides three programs for PDF conversion, :program:`pdfgetx3`, :program:`pdfgetn3` and :program:`pdfgets3`. To check if they are correctly installed run :: - - pdfgetx3 --version - pdfgetn3 --version - pdfgets3 --version - -This should display the software version, which should agree -with the VERSION string in the wheel package name. -The installation also includes a :program:`plotdata` -command for an easy plotting of text data files. To verify -if plotdata works, run the ``plotdata --version`` command. -Finally, a comprehensive test of the installed software can -be executed using :: - - python -m diffpy.pdfgetx.tests.run - -.. note:: - - Older versions of diffpy.pdfgetx use Python egg format - instead of Python wheel. - To install these use the easy_install command as follows:: - - python -m easy_install ./diffpy.pdfgetx-VERSION.egg - -.. index:: %pdfgetx3 IPython magic -.. index:: %pdfgetn3 IPython magic -.. index:: %pdfgets3 IPython magic - -IPython magic command ------------------------------------------------------------------------- - -These instructions are intended for `IPython`_ users who would like to -integrate PDFgetX3, PDFgetN3 and PDFgetS3 into their IPython environment. If -you don't plan to customize IPython in such way you can safely skip -this paragraph. - -When pdfgetx3 or pdfgetn3 or pdfgets3 is run in interactive mode, it start -IPython interactive shell and define an extra ``%pdfgetx3``, ``%pdfgetn3`` and ``%pdfgets3`` magic commands within the IPython session. The IPython -magic commands are not valid Python code, but work in a similar -fashion as standard shell commands. The ``%pdfgetx3``, ``%pdfgetn3`` and ``%pdfgets3`` magics can be thus used with the same options and arguments as if run from the shell. This is useful for processing more files, while -preserving all plots or variables that were already created -in an IPython session. - -The ``%pdfgetx3``, ``%pdfgetn3`` and ``%pdfgets3`` magic commands can be defined -permanently so they are available in all IPython sessions. To set -this up - -#. find the ``profile_default/ipython_config.py`` file and open it - in a text editor. If that file does not exists, - create it first by executing :: - - ipython profile create - -#. navigate to the paragraph that contains the - :py:data:`!c.InteractiveShellApp.extensions` and add there - the following line :: - - c.InteractiveShellApp.extensions = ['diffpy.pdfgetx.ipy_magics'] - - There must be no leading indent, i.e., the text must start at the - very first column. diff --git a/static_root/doc/pdfgetx/2.1.2/_sources/interact.rst.txt b/static_root/doc/pdfgetx/2.1.2/_sources/interact.rst.txt deleted file mode 100644 index 0d4fb746..00000000 --- a/static_root/doc/pdfgetx/2.1.2/_sources/interact.rst.txt +++ /dev/null @@ -1,154 +0,0 @@ -Interactive mode -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 -.. py:currentmodule:: _interactive_ - -The interactive mode is activated by using either the -:option:`-i, --interact <-i>` option or a non-empty -:option:`--plot <-p>` option. In the interactive mode -the program starts an `IPython`_ interactive shell and pre-loads several -functions and variables related to the PDF calculation. It also defines -IPython commands ``%pdfgetx3`` and ``%pdfgetn3``, which can be used with -the same syntax as the :program:`pdfgetx3` and :program:`pdfgetn3` in -system shell. -The interactive session is also initialized with all functions from the -:py:mod:`matplotlib.pyplot` module for convenient plotting. -The functions and variables related to PDF processing are: - -.. py:function:: pdfgetter(x=None, y=None, filename='', **kwargs) - - Instance of the :py:class:`!PDFGetter` class which serves as a - low-level function that calculates the PDF. This is a callable - object, which takes as an argument a pair of input arrays for - (*Q*, intensity) or (|twotheta|, intensity) depending on - :confval:`dataformat`. It can be also called with a keyword - argument ``filename=FILE``, which would read the input arrays - from the specified file. When called with no arguments, - it calculates PDF from the last input data. - - :parameters: - * **x** (*numpy.ndarray, optional*) -- - The *Q* or |twotheta| values in powder diffraction pattern. - - * **y** (*numpy.ndarray, optional*) -- - The scattered intensities in powder diffraction pattern - - * **filename** (*str, optional*) -- - The text data file for loading the `x`, `y` values when - they are not specified. - - * **kwargs** (*misc, optional*) -- - Extra keyword arguments that are applied to - the :data:`!config` object, for example ``qmax=20``. - - :return: - A pair of output arrays *(r, G)*. - -.. interactvar:: config - - Instance of the :py:class:`!PDFConfig` class that stores the - :ref:`parameters and input files ` for the program. - Use ``print(config)`` to display the current configuration values. - This is the same object as :data:`!pdfgetter.config`. Configuration - may be changed by setting a respective attribute of the - :interactvar:`!config` object, for example:: - - In [1]: config.qmax = 21 - - The :py:data:`!config` values may be also changed by calling the - :py:func:`pdfgetter` or :py:func:`processfiles` function with a - corresponding keyword argument, for example - ``processfiles(qmax=20, force="once")``. - -.. interactvar:: iraw - iq - sq - fq - gr - - These variables are assigned the input raw intensities and the - intermediate results, stored as matrix rows. The matrix rows - correspond to twotheta1, intensity1, twotheta2, intensity2, etc. - Because matrices are iterated row first, the raw intensities - from all input files can be plotted with the matplotlib plot - function as ``plot(*iraw)``. - - These variables should be considered read-only and are reset - with subsequent PDF calculations. - -.. py:function:: tuneconfig(plotids=None, pdfgetter=None, axeslist=None) - - Show a GUI dialog for interactive tuning of configuration variables. - - :arg plotids: - The string or iterable that specify what interactive plots should be - tuned. By default the same as ``config.plot``. It can be also an - integer index or name of a transformation in :py:func:`pdfgetter` or - a reference to a :py:class:`!Transformation` object. - - :arg pdfgetter: - The optional :py:class:`!PDFGetter` object to be tuned. - This is by default the interactive :py:func:`!pdfgetter` object. - - :arg axeslist: - An optional list of matplotlib Axes for showing interactive plots. - When None, use ``subplot(N, 1, i)`` to create any necessary axes. - - .. note:: - - Changes from :py:func:`!tuneconfig` apply only to the configuration - and results in memory. Use the :py:func:`processfiles` function - to save them to disk. - - .. seealso:: :ref:`my-tuneconfig` tutorial - -.. py:function:: processfiles(filename=None, **kwargs) - - Process all input files again with the current configuration values. - This is a higher-level function than :py:func:`pdfgetter`, as - it also saves output files and produces plots as specified by the - :interactvar:`config` object. - - :arg filename: - One or more input files to be converted to PDFs and saved or - plotted according to the :py:data:`!config` settings. Use the - previous list of input files when not specified. - - :arg kwargs: - An optional keyword arguments to set for the :py:data:`!config` - object, for example ``(force="once", qmax=18)``. - - This function updates the :interactvar:`config.inputfiles ` - list and the :interactvar:`iraw`, :interactvar:`iq`, - :interactvar:`sq`, :interactvar:`fq` and :interactvar:`gr` - interactive variables. - -.. py:function:: clearsession() - - Clear all elements from the :interactvar:`config.inputfiles ` - and also the - :interactvar:`iraw`, :interactvar:`iq`, :interactvar:`sq`, - :interactvar:`fq` and :interactvar:`gr` variables. - - :return: - No return value. - -.. py:currentmodule:: diffpy.pdfgetx -.. autofunction:: loaddata - - This function can be imported from the - :py:mod:`!diffpy.pdfgetx` module. - -.. py:currentmodule:: diffpy.pdfgetx.plotdata -.. autofunction:: plotdata - - This function can be imported from the - :py:mod:`!diffpy.pdfgetx.plotdata` module. - -.. py:currentmodule:: diffpy.pdfgetx -.. autofunction:: findfiles - - This function can be imported from the - :py:mod:`!diffpy.pdfgetx` module. diff --git a/static_root/doc/pdfgetx/2.1.2/_sources/intro.rst.txt b/static_root/doc/pdfgetx/2.1.2/_sources/intro.rst.txt deleted file mode 100644 index a112ee9a..00000000 --- a/static_root/doc/pdfgetx/2.1.2/_sources/intro.rst.txt +++ /dev/null @@ -1,70 +0,0 @@ -Introduction -======================================================================== - -diffpy.pdfgetx is a simple yet powerful software for converting X-ray or -neutron powder diffraction data to atomic Pair Distribution Functions -(PDFs). In addition, it also allows the extraction of PDFs from small-angle -scattering (SAS) data. The software includes three command line programs -PDFgetX3, PDFgetN3 and PDFgetS3 for processing X-ray, -constant-wavelength neutron and small-angle diffraction data -respectively. PDFgetX3, PDFgetN3 and PDFgetS3 can be used in a batch -mode to convert a series of data files without user intervention. The -programs can be also run in an interactive mode that allows to control -process parameters and plot the PDFs and any intermediate results. Users -can interactively tune the PDF processing parameters, visualize their effect on the results and adjust them to their optimum values. The programs are bundled with Python library diffpy.pdfgetx for PDF processing functions, which can be used in custom Python scripts. - - -.. index:: license - -License notice ------------------------------------------------------------------------- - -.. include:: ../../LICENSENOTICE.txt - - -.. index:: authors - -Authors ------------------------------------------------------------------------- - -This code was written by members of the Billinge Group at -Columbia University and Brookhaven National Laboratory including -Pavol Juhás, -Timur Davis, -Chia-Hao (Timothy) Liu, -Christopher Wright, -Christopher Farrow, -Hung Vuong, -Songsheng Tao, -Simon Billinge. - - -.. index:: citations, references - -References ------------------------------------------------------------------------- - -If you use this program for a scientific research that leads -to publication, we ask that you acknowledge use of the program -by citing the following paper in your publication: - - P. Juhás and T. Davis, C. L. Farrow, S. J. L. Billinge - `PDFgetX3: A rapid and highly automatable program for processing - powder diffraction data into total scattering pair distribution - functions `__, - *J. Appl. Crystallogr.* **46**, 560-566 (2013) - -For research publications that use this software to process neutron -diffraction data we ask you to also cite: - - P. Juhás, J. N. Louwen, L. van Eijck, E. T. C. Vogt, - S. J. L. Billinge - `PDFgetN3: atomic pair distribution functions from neutron - powder diffraction data using ad hoc corrections - `__, - *J. Appl. Crystallogr.* **51** (2018) - -For research publications utilising the sasPDF utility, PDFGetS3, we ask you to acknowledge the use of the program by citing following paper in your publication: - - CH Liu, E. Janke, R. Li, P. Juhás, O. Gang, D. V. Talapin, S. J. L. Billinge - `sasPDF: pair distribution function analysis of nanoparticle assemblies from small-angle-scattering data `__. diff --git a/static_root/doc/pdfgetx/2.1.2/_sources/options.rst.txt b/static_root/doc/pdfgetx/2.1.2/_sources/options.rst.txt deleted file mode 100644 index c02220f2..00000000 --- a/static_root/doc/pdfgetx/2.1.2/_sources/options.rst.txt +++ /dev/null @@ -1,370 +0,0 @@ -Options and parameters -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 - -PDFgetX3, PDFgetN3 and PDFgetS3 are very flexible in allowing users to customize -the actions of the program. They have a number of parameters that can -be specified either in configuration file or as command line options. -Here is a complete description of the parameters and options used by -either program. - - -.. Note :: - - The command line options start with a leading "-" and can - be only used as command line arguments when starting the - :program:`pdfgetx3` program. Within configuration file the parameter - names are plain words without any leading dashes. Finally, - parameters can be also set in the interactive mode as attributes of - the :interactvar:`config` object, but the assignments must be valid - Python statements. Here are examples of setting composition of - a processed specimen using each of these forms: - - #. assigned in configuration file:: - - ... - composition = CaTiO3 - ... - - #. set as a command-line option when starting :program:`pdfgetx3` or - :program:`pdfgetn3`:: - - pdfgetx3 --composition=CaTiO3 - - #. set in the IPython interactive mode:: - - pdfgetx3 -i - ... - In [1]: config.composition = "CaTiO3" - - -Program operation ------------------------------------------------------------------------- - -.. option:: -h, --help - - Display a brief usage information with a list of command line options - and exit. - -.. option:: -V, --version - - Display the program version and exit. - -.. option:: --manual - - Open this manual in a Web browser and exit. - -.. option:: -f, --find -.. _my-findpatterns: - - Select input files that match all patterns. The command - line arguments are by default taken as input files. However, - with the :option:`!--find` option they are processed as - file patterns and the matching files are then used as inputs. - The input files are by default searched in the current directory - unless there is a path entry (e.g., :file:`data/`) that - selects a different search path. The search patterns are - interpreted as fixed strings, all of which must be present - in the file name. A single argument ``+`` starts - a new group of patterns to match more files that are not - covered by one set of patterns. Additional pattern - groups reuse the current search path unless they provide - their own path value. Pattern groups containing only - a path entry reuse file patterns from the last group. - When pattern groups overlap the repeated matches are ignored - to make the resulting list of files unique. Files starting - with ``.`` are ignored unless there is ``^.`` pattern - that explicitly matches them. The search - syntax provides the following special patterns: - - .. tabularcolumns:: |l|p{0.75\textwidth}| - - +---------+------------------------------------------------------------+ - | ^ | match at the beginning of the string, i.e., ``^start`` | - | | matches only filenames that start with "start". | - +---------+------------------------------------------------------------+ - | $ | match at the end of string, for example, ``.chi$`` selects | - | | file names ending with ".chi". A ``$`` on its own | - | | matches every string and can be used to select all files. | - +---------+------------------------------------------------------------+ - | | match number *N* preceded by any number of leading zeros, | - | | e.g., ``<7>`` would match in "f7.chi", "f007.chi", but not | - | | in "f77.chi". | - +---------+------------------------------------------------------------+ - | | match an integer range from *N* to *M* inclusive. | - | | The matched number may have one or more leading zeros. | - +---------+------------------------------------------------------------+ - | <7-> | match number 7 or larger. | - +---------+------------------------------------------------------------+ - | <-7> | match number 7 or smaller. | - +---------+------------------------------------------------------------+ - | <-> | match any integer number. | - +---------+------------------------------------------------------------+ - | \+ | start a new pattern group, for example, ``.chi$ + .dat$`` | - +---------+------------------------------------------------------------+ - | / | set search path. An argument containing the ``/`` symbol | - | | is taken as the search path, for example, ``data/`` or | - | | ``./``. Each pattern group may provide its own search | - | | path effective for that and any subsequent pattern group. | - +---------+------------------------------------------------------------+ - - The ``^$<>`` characters are often special to Unix or Windows - command shells, therefore they need to be enclosed in double - quotes (\\") when used on command line. - - .. seealso:: tutorial on :ref:`my-findexamples` - -.. option:: -l, --list - - List all input files and exit. This is useful with the - :option:`!--find` option to verify if input files - are matched as intended. - - -Configuration file options ------------------------------------------------------------------------- - -.. option:: -c CONFIG, --config=CONFIG - - Read custom configuration file after loading the default ones. - Do not load any configuration file when "NONE". - -.. option:: -s NAME, --section=NAME - - Load the custom configuration file section ``[SectionName]`` after - loading the ``[DEFAULT]`` section. This is useful for creating - several configuration variants in a single configuration file. - -.. option:: --createconfig=FILE - - Write template configuration to a new FILE and exit. Write - to the standard output when FILE is "-". - -See also the :ref:`configuration file ` section -for further details. - -.. _my-ioparameters: - -Input and output options ------------------------------------------------------------------------- - -.. confval:: inputfile - - This parameter allows to specify one or more input files in the - configuration file, one file per line. The :confval:`!inputfile` - is only used if no input files were provided on the - :program:`pdfgetx3` or :program:`pdfgetn3` command line. - -.. confval:: dataformat -.. option:: --format=FORMAT - - Format of input files. Available formats are: ``twotheta``, ``QA``, - ``Qnm`` corresponding to a two-column text data where the first - column is either the scattering angle |twotheta| in degrees, *Q* in - inverse ångströms or *Q* in inverse nanometers. - -.. confval:: backgroundfile -.. option:: -b FILE, --background=FILE - - Optional datafile with background intensities from an empty sample - holder. It must be in the same dataformat as other input files. - -.. Note :: - - The following input is only used in ``sas`` mode. - -.. confval:: formfactorfile -.. option:: -ff FILE, --formfactorfile=FILE - - Form factor intensities of the scatterers. This is required for ``sas`` mode. The form factor file is expected to be in two-column format with (Q, f2avg) data or three-column format with (Q, f2avg, favg2) data. The unit of Q is required to be A^-1. - -.. _my-datapath: -.. confval:: datapath -.. option:: -d DATAPATH, --datapath=DATAPATH - - One or more extra directories to be searched for input or - background data files. The :option:`!-d` option can be specified - several times to add more directories, these are prepended in front - of any default value. Within configuration file the datapath - directories have to be listed each on a separate line. - - A special value "NONE" (or "none") clears any previously defined - paths and only the further paths, if any, would be searched for - inputs. - -.. confval:: output -.. option:: -o OUTPUT, --output=OUTPUT - - Output file name, write to the standard output when "-". The - :option:`-t, --outputtypes <-t>` option controls what results are - being saved. Normally the OUTPUT is used as a custom basename for - the output files. The OUTPUT may contain @f, @h, @r, @e, @t, @b, @o - tokens, which are expanded as follows: - - ===== ================== ======================================= - token example definition - ===== ================== ======================================= - @h dir1/dir2 the input file directory or "." - @r dir1/dir2/filename the input path with extension removed - @e dat the input file extension without "." - @t filename.dat the tail component of the input file - @b filename the tail component with extension removed - @o gr the output extension iq, sq, fq or gr - ===== ================== ======================================= - - An empty value works the same as "@b.@o" and saves the data - in the current directory with a proper extension for the - saved results. When "@o" is not present in the OUTPUT, it is - appended as a default filename extension. - -.. confval:: outputtypes -.. option:: -t TYPES, --outputtypes=TYPES - - Result types to be saved, one or more comma separated values. - Supported values are "iq", "sq", "fq", "gr", corresponding to the - |IQ|, |SQ|, |FQ| and |Gr| curves; these are also used as output - file extensions. - - Result files are not written when empty, "none" or "NONE". - -.. confval:: force -.. option:: --force=FORCE - - Overwrite existing output files. By default the output - files are not written if they already exist. Possible values - in a configuration file are "true", "yes", "on", "1" or - "false", "no", "off", "0" or "once". The special value "once" - permits one overwrite and then resets ``config.force`` to - ``False``. Note that in interactive mode the values assigned - to ``config.force`` are converted to Python :py:class:`bool` - unless equal to "once". - - -.. _my-pdfparameters: - -PDF parameters ------------------------------------------------------------------------- - - -.. confval:: mode -.. option:: --mode=STRING - - The PDF conversion mode, i.e., the name of the - :py:func:`.pdfgetter` setup. The available modes correspond - to the radiation type used in powder diffraction experiment and can - be "xray" or "neutron". - -.. confval:: wavelength -.. option:: -w FLOAT, --wavelength=FLOAT - - X-ray wavelength in ångströms. This value is required - for the "twotheta" dataformat in order to convert the scattering - angles |twotheta| to a momentum transfer *Q*. For other data formats - the wavelength is not necessary and may be left undefined. - -.. confval:: twothetazero -.. option:: --twothetazero=FLOAT - - Position of the zero scattering angle in diffractometer degrees. - This parameter corrects for a constant offset in the - measured |twotheta| values. When loading configuration file - it is assumed 0 unless specified otherwise. This parameter - is only effective for the "twotheta" dataformat. - -.. confval:: composition -.. option:: --composition=STRING - - Chemical composition of the sample. Supported formats are - "PbTi0.5Zr0.5O3", "Pb 1 Ti 1/2 Zr 1/2 O 3" or "CH3 (CH2)3 OH". - Space characters are ignored, unit counts can be omitted, but it is - important to use a proper upper and lower case in atom symbols. - Elements can appear several times in the formula, e.g., "CH3 CH3", - and the formula may contain parentheses or fractional - stoichiometries. - -.. confval:: bgscale -.. option:: --bgscale=FLOAT - - Scaling of the background intensities loaded from the - :confval:`backgroundfile`, by default 1. - -.. confval:: rpoly -.. option:: --rpoly=FLOAT - - *r*-limit for the maximum frequency in the |FQ| correction polynomial. - The PDF is unreliable at shorter *r*, however a - very small :confval:`!rpoly` would disable polynomial correction and - give noisy PDF. - Larger values produce closer fits with a higher degree polynomial, - but when too large, they might smooth-out a useful signal in the - data. The default is 0.9. - -.. confval:: qmaxinst -.. option:: --qmaxinst - - The *Q* cutoff for the meaningful input intensities in inverse - ångströms. Some data files may contain trailing zeros - or unreliable intensities at the upper bound of the detector range. - The :confval:`!qmaxinst` defines a threshold for unreliable data. - The parameter is also used as an upper boundary for the polynomial - fit correction of the |SQ| data. - -.. confval:: qmin -.. option:: --qmin - - The lower *Q*-limit for the Fourier transformation of the |FQ| curve - in inverse ångströms. - -.. confval:: qmax -.. option:: --qmax - - The upper *Q*-limit for the Fourier transformation of the |FQ| curve - in inverse ångströms. This is essentially a limit, where sample - signal decays to the level of data noise. - -.. confval:: rmin -.. option:: --rmin=FLOAT - - Lower bound of the *r*-grid for the calculated PDF in ångströms. - -.. confval:: rmax -.. option:: --rmax=FLOAT - - Upper bound of the *r*-grid for the calculated PDF in ångströms. - -.. confval:: rstep -.. option:: --rstep=FLOAT - - Spacing of the *r*-grid for the calculated PDF in ångströms. - - -Other parameters ------------------------------------------------------------------------- - -.. confval:: plot -.. option:: -p TYPES, --plot=TYPES - - Plot the specified results. A comma separated list with one or - more items from "iq", "sq", "fq", "gr". No plot is produced when - empty, "none" or "NONE". Setting this option turns on the - interactive mode. - -.. confval:: interact -.. option:: -i, --interact - - Start an IPython interactive session after processing all files. - Useful for tuning the configuration parameters or interactive - plotting. This is always on when plot option has been set. - See also :doc:`interact` for further details. - -.. confval:: verbose -.. option:: --verbose=VALUE - - Level of detail for the program to report about its actions. - Possible values are "error", "warning", "info", "debug", "all" or an - integer number from 0 to 5. Messages are completely suppressed when - 0, all messages are printed when verbose is 5 ("all") or higher. - This option is useful for diagnostics of any unexpected behavior - in the program. diff --git a/static_root/doc/pdfgetx/2.1.2/_sources/plotdata.rst.txt b/static_root/doc/pdfgetx/2.1.2/_sources/plotdata.rst.txt deleted file mode 100644 index d1c02156..00000000 --- a/static_root/doc/pdfgetx/2.1.2/_sources/plotdata.rst.txt +++ /dev/null @@ -1,161 +0,0 @@ -.. index:: plotdata (program) -.. _cmd-plotdata: - -The plotdata program -======================================================================== - -.. include:: abbreviations.txt -.. program:: plotdata - -The PDFgetX3 software includes a simple stand-alone utility -:program:`plotdata` for plotting text data files. In most cases -this program can be invoked from a command-shell as :: - - plotdata file1.dat file2.dat - -which plots the numerical data from the text files :file:`file1.dat`, -:file:`file2.dat` together in a single graph. By default the first -column is used as an *x* variable and the second column is used for the -*y* values. After displaying the plot the program starts an `IPython`_ -interactive session allowing the user to modify or save plots. The -IPython session is initialized with the :data:`!filenames` variable -containing a list of plotted files. It also pre-loads the -|plotdata| and |findfiles| functions just as in PDFgetX3 -interactive session. The :py:func:`!plotdata` -function works in a similar way as the :program:`plotdata` program, -just its arguments need to be passed as Python function arguments -instead of command-line options. Thus an equivalent call of the -:py:func:`!plotdata` function would be:: - - In [1]: plotdata(['file1.dat', 'file2.dat']) - - -Selecting files ------------------------------------------------------------------------- - -The :program:`plotdata` program includes a file searching feature -that is useful for selecting a set of files in large -directories. It is also convenient for Windows operating systems, -where the command prompt cannot do filename expansion for patterns -such as ``*.dat``. The file search feature is controlled by the -following options: - -.. option:: -f, --find - - Use command line arguments as filename patterns and plot all matching - files. This option works in the same way as for - :program:`pdfgetx3`, for full details see the - :option:`pdfgetx3 --find ` documentation. Note that - within command line the special patterns ``^$<>`` need to be quoted - in double quotes (\\") so they are not processed by command shell. - -.. option:: -l, --list - - List the input files and exit. This is useful in conjunction - with the :option:`!-f, --find` option to check if data files - are selected as intended. - -Assuming the current directory contains 20 files named -:file:`file1.dat`, :file:`file2.dat`, ..., :file:`file20.dat`, -the plotting of files 9 to 13 could be done (with a check listing) -as follows :: - - $ plotdata -fl "<9-13>.dat" - file9.dat - file10.dat - file11.dat - file12.dat - file13.dat - $ plotdata -f "<9-13>.dat" - -Within an interactive IPython session the equivalent plot could be -produced by combining the |plotdata| and |findfiles| functions as :: - - In [1]: plotdata(findfiles("<9-13>.dat")) - - -Selecting x and y data ------------------------------------------------------------------------- - -The :program:`plotdata` program provides several ways of selecting -columns for *x* or *y* data and for specifying plot markers or line -formats. The columns can be specified using their integer index, -but one needs to keep in mind the index of the first column is "0" -as per Python indexing conventions. Here is a list of options -supported by the plotdata program (and function): - - -.. option:: -x X - - index or name of the *x*-column to plot. See the :option:`-y` option - for the supported syntax, but note that ``X`` may select only one - column. When set to "." use the data-row index for *x*. - -.. option:: -y Y - - index or name of the *y*-column or columns to plot. The ``Y`` column - specification can be a comma separated list of indices, column names - or Python-like ranges, for example "1,2", "G", "1:4" (START:STOP, - same as "1,2,3"), "1:4:2" (START:STOP:STEP, same as "1,3"), or - "-2:" (same as "-2,-1", i.e, the last 2 columns). Because column - indexing starts at "0" the second column must be specified as "1". - - The column names work if the data section in the file is preceded by - a headline of unique column names, for example:: - - x square cube - 1 1 1 - 2 4 8 - 3 9 27 - 4 16 64 - - For such data file the plotdata program will recognize column names - "x", "square" and "cube" and an implicit "." for row index. - -.. option:: -s STYLE, --style=STYLE - - optional plot format specification. See the - :func:`matplotlib.pyplot.plot` function - for a list of available formats. - -.. option:: -L LOG, --log=LOG - - axes to be plotted with logarithmic scaling, for example, "x", "y" or - "xy". Axes not listed in ``LOG`` will use linear scaling. - -.. option:: -h, --help - - display a brief usage info and exit. - -.. option:: -V, --version - - show program version and exit. - -.. option:: --manual - - Open this manual page in a Web browser and exit. - - -Examples ------------------------------------------------------------------------- - -The examples directory :file:`plotdata` contains a :file:`sincos.dat` -file that has 3-columns of values labeled as "x", "sin" and "cos". -Here are several examples of the :program:`plotdata` capabilities -when used from command line - the user is encouraged to try them out:: - - plotdata sincos.dat - plotdata -y 1,2 sincos.dat - plotdata -x . -y 0:3 sincos.dat - plotdata -y cos sincos.dat - plotdata -x sin -y cos -sr-- sincos.dat - -An equivalent usage from a general IPython session would be:: - - ipython --matplotlib=auto - In [1]: from diffpy.pdfgetx.plotdata import plotdata - In [2]: plotdata('sincos.dat') - In [3]: plotdata('sincos.dat', y=[1,2]) - In [4]: plotdata('sincos.dat', x='.', y=':3') - In [5]: plotdata('sincos.dat', y='cos') - In [6]: plotdata('sincos.dat', x='sin', y='cos', style='r--') diff --git a/static_root/doc/pdfgetx/2.1.2/_sources/quick-start.rst.txt b/static_root/doc/pdfgetx/2.1.2/_sources/quick-start.rst.txt deleted file mode 100644 index 0b2fffd1..00000000 --- a/static_root/doc/pdfgetx/2.1.2/_sources/quick-start.rst.txt +++ /dev/null @@ -1,163 +0,0 @@ -Quick-start guide -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 - -This guide assumes that the software has been correctly installed and -its command line programs PDFgetX3, PDFgetN3 and PDFgetS3 can be -executed by typing :program:`pdfgetx3`, :program:`pdfgetn3`, or -:program:`pdfgets3` in a shell window. Please, refer to the :doc:`installation ` section if this is not working yet. - -.. index:: pdfgetx3 (program) -.. _cmd-pdfgetx3: - -pdfgetx3 command ------------------------------------------------------------------------- - -The pdfgetx3 program is a command-line application, therefore all -the input files and run-parameters are supplied either as command-line -arguments or through a configuration file. In general, the pdfgetx3 is -executed from a command shell as :: - - pdfgetx3 [options] input1 input2 ... inputN - -The :file:`inputN` stands for an input powder diffraction data. The -:file:`inputN` file is a simple two-column text file, where the first -column corresponds to either the |twotheta| diffraction angle, or a -momentum transfer, *Q*, in inverse nanometer or inverse ångström units. -The second column contains the corresponding X-ray intensities. The -input file may start with a header containing comments or metadata -related to the measurement. PDFgetX3 will ignore any text leading to a -long two-column section. The example input files in this manual were -created with the -`FIT2D program `_ using -its "chi" output format, thus we will also refer to them as "chi-files". -A typical content of a "chi" file looks as folows: - -.. code-block:: none - - Pt_bulk-00055.tif: 2-theta Scan - 2-Theta Angle (Degrees) - - 1465 - 2.0003892E-02 0.0000000E+00 - 6.0011677E-02 0.0000000E+00 - 1.0001946E-01 0.0000000E+00 - 1.4002724E-01 0.0000000E+00 - 1.8003502E-01 0.0000000E+00 - ... - -The command-line options are arguments that start with a dash "-" and -are used to specify run-parameters or modify the program behavior. The -options can be specified in a short form that consists of a dash and -a single character, or in a long, more descriptive format starting with -a doubled dash ``--``. Options may require values. For short options, -the value may be joined to the option string, for example -:option:`!-w0.142774`, while for the long options it has to be separated -with an equal sign, e.g., :option:`!--wavelength=0.142774`. Although -all the PDF calculation parameters can be passed as command line -options, it is often more convenient to set them in a configuration -file. When run parameter is present both in a configuration file and -as command-line option, the command-line value takes precedence. The -command-line options are all described in the :doc:`options` section of -this manual. A brief summary of options can be also displayed by -executing :: - - pdfgetx3 --help - -The best way of getting familiar with PDFgetX3 is to process -the example diffraction data described in the :doc:`tutorial`. -In general, the first step is to create a commented configuration file ``pdfgetx3.cfg`` using:: - - pdfgetx3 --createconfig=pdfgetx3.cfg - -The configuration file can have any name, but it is preferable -to use either :file:`pdfgetx3.cfg` or :file:`.pdfgetx3.cfg`, -for these files are automatically loaded by PDFgetX3. All -other configuration files must be passed explicitly to the program -using the :option:`-c, --config <-c>` option. - -Open the pdfgetx3.cfg file in a **text** editor. The lines that -start with a hash mark ``#`` are comments and are not used. The lines -starting with a right brace ``[`` denote sections in the configuration -file. The active lines are all formatted as -"NAME=VALUE". Although PDFgetX3 has many options, in general only a few -of them are critical for the PDF calculation: - -* :confval:`dataformat` -- specifies the input data format - -* :confval:`wavelength` -- radiation wavelength in Å required for the - "twotheta" format. - -* :confval:`composition` -- chemical composition of the sample - -* :confval:`qmaxinst` -- upper *Q* boundary for a meaningful measurement - intensities. - -* :confval:`qmax` -- *Q*-cutoff for the Fourier transformation that - yields the PDF. - -Save the updated configuration file and run pdfgetx3 on the input data -:file:`FILENAME.chi` as :: - - pdfgetx3 --verbose=info -t gr FILENAME.chi - -Here the :option:`--verbose=info <--verbose>` option makes pdfgetx3 -print -more information about its operation. This helps to verify -if the configuration file is indeed loaded and if the parameter -values are assigned as intended. The PDFgetX3 will not write -any output files unless told so. The :option:`-t gr <-t>` option -tells the program to save the final |Gr| curve as a -:file:`FILENAME.gr` file in the working directory. - -The saved .gr file contains a header with all the calculation -parameters and the input file name. The .gr file can be therefore -also used as a configuration file in order to redo the same -calculation :: - - pdfgetx3 -c FILENAME.gr --plot=fq,gr - -Note this command does not include any .chi file and this will as -a result process the previously used input :file:`FILENAME.chi`. -The :option:`--plot=fq,gr <-p>` option tells PDFgetX3 to -display 2 plots for the reduced structure function |FQ| and the -final PDF |Gr|. The :option:`!--plot` option also implies an -:doc:`interactive mode ` -therefore the program does not exit, but starts an -interactive `IPython`_ session. To exit the interactive mode, -type ``exit()`` and press Enter. - -.. index:: pdfgetn3 (program) -.. _cmd-pdfgetn3: - -pdfgetn3 command ------------------------------------------------------------------------- - -The pdfgetx3 and pdfgetn3 programs operate in a very similar fashion -apart from being set to assume X-ray and neutron data respectively. -The type of the scattering data can be also specified using the -:option:`--mode` option. Running ``pdfgetn3`` is nearly identical -to executing ``pdfgetx3 --mode=neutron``. The only difference between -these commands is that pdfgetx3 checks for configuration files -:file:`pdfgetx3.cfg` and :file:`.pdfgetx3.cfg`, whereas -pdfgetn3 looks for :file:`pdfgetn3.cfg` and :file:`.pdfgetn3.cfg`. - -.. index:: pdfgets3 (program) -.. _cmd-pdfgets3: - -pdfgets3 command ------------------------------------------------------------------------- - -The pdfgets3 program is virtually the same as its counterparts for x-ray -(pdfgetx3) and neutron (pdfgetn3) diffraction data. The only difference -is that instead of referencing the well documented x-ray or neutron -scattering form factor data, a user-defined form factor data is used -for getting the PDF from a small-angle scattering (SAS) data. This -behavior is enabled by specifying ``mode = sas`` in the configuration -file or in the command line tool. The pdfgets3 program by default -searches for a configuration named :file:`pdfgets3.cfg` and -:file:`.pdfgets3.cfg` in order, when no configuration file is specified. - -Please refer to the :doc:`tutorial section ` for a step-by-step processing of the example data files and for demonstration of the capabilities in PDFgetX3, PDFgetN3 and PDFgetS3. diff --git a/static_root/doc/pdfgetx/2.1.2/_sources/release.rst.txt b/static_root/doc/pdfgetx/2.1.2/_sources/release.rst.txt deleted file mode 100644 index 7ede93fa..00000000 --- a/static_root/doc/pdfgetx/2.1.2/_sources/release.rst.txt +++ /dev/null @@ -1,3 +0,0 @@ -.. index:: release notes - -.. mdinclude:: ../../CHANGELOG.md diff --git a/static_root/doc/pdfgetx/2.1.2/_sources/tutorial.rst.txt b/static_root/doc/pdfgetx/2.1.2/_sources/tutorial.rst.txt deleted file mode 100644 index ee02754b..00000000 --- a/static_root/doc/pdfgetx/2.1.2/_sources/tutorial.rst.txt +++ /dev/null @@ -1,744 +0,0 @@ -Tutorial -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 -.. index:: example files -.. py:currentmodule:: diffpy.pdfgetx - -In this tutorial we will convert several X-ray powder diffraction -patterns to corresponding PDFs. Open a terminal on a Unix-based system -or a Command Prompt on Windows and navigate to the :file:`examples` -folder included with the PDFgetX3 distribution. The :file:`examples` -folder can be found in the parent "doc" directory relative to this -document or another option is to just search your file system for -one of the input files mentioned below. -The example files are also available at -|zipped-examples|. - - -.. index:: examples - -Nickel X-ray PDF ------------------------------------------------------------------------- - -predefined configuration file -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - - -Change to the :file:`Ni` directory. The file named -:file:`ni300mesh_300k_nor_1-5.chi` contains powder X-ray data -measured from nickel at the Advanced Photon Source beamline -6ID-D. The file contains two columns for the |twotheta| scattering -angles and X-ray intensities. The second file -:file:`kapton_bgrd_300k_nor_2-3.chi` contains the background -measurement, i.e., the intensities from an empty capillary. -Finally, the :file:`pdfgetx3.cfg` contains a complete configuration -parameters for converting the powder pattern to a PDF. Since all -processing parameters are already defined in the configuration file, -the first PDF calculation is very simple and involves running the -:ref:`pdfgetx3 ` program -with the powder data file as an argument:: - - $ pdfgetx3 ni300mesh_300k_nor_1-5.chi - -For the first run there should be no output on the screen, -however a new file, :file:`ni300mesh_300k_nor_1-5.gr` should appear -in the work directory. -We can use the :ref:`plotdata ` program, -included with this software, to plot the output data:: - - $ plotdata ni300mesh_300k_nor_1-5.gr - -This will open a graph window and start an `IPython`_ interactive session. -To exit and close the figure, type ``exit()`` on the IPython prompt. -Let's run the program again, but now with a -:option:`--verbose=info <--verbose>` -option, to show more details about the program actions. :: - - $ pdfgetx3 --verbose=info ni300mesh_300k_nor_1-5.chi - - INFO:applying pdfgetx3 defaults - INFO:set config.mode = xray - INFO:searching for default config file /home/user/.pdfgetx3.cfg - INFO:searching for default config file .pdfgetx3.cfg - INFO:searching for default config file pdfgetx3.cfg - INFO:loaded default config file pdfgetx3.cfg - INFO:reset config.twothetazero = 0.0 - INFO:parsing config file section [DEFAULT] - INFO:set config.dataformat = twotheta - INFO:set config.backgroundfile = kapton_bgrd_300k_nor_2-3.chi - INFO:set config.outputtypes = gr - INFO:set config.wavelength = 0.142774 - INFO:set config.composition = Ni - INFO:set config.qmaxinst = 26.5 - INFO:set config.qmax = 26.0 - INFO:set config.rmin = 0.0 - INFO:set config.rmax = 30.0 - INFO:set config.rstep = 0.01 - INFO:finished parsing config file - INFO:processing command line options - INFO:set config.verbose = info - INFO:finished with command line options - INFO:using 1 input files from the command line. - INFO:configuring PDFGetter mode 'xray' - INFO:calling config_xray - INFO:started PDF processing. - INFO:processing 'ni300mesh_300k_nor_1-5.chi' - INFO:resolved output file '' as 'ni300mesh_300k_nor_1-5.gr' - WARNING:ni300mesh_300k_nor_1-5.gr already exists. - WARNING:Use "--force=yes" or "--force=once" to overwrite. - INFO:elapsed time: 0.095 - -Here we can see what configuration files are searched, which of them -get loaded and what are the effective values of the processing -parameters. Unless the :option:`!--verbose` option is in effect, the -program will show only messages that have either WARNING or ERROR -importance. The warning line above indicates no output has been -written, because that file already exists. This safety check can be -overruled with the :option:`--force=yes <--force>` option, upon -which pdfgetx3 would overwrite any existing files. - -PDFgetX3 output files start with a header that lists all the processing -parameters and can be used as a valid configuration file with the -:option:`-c` option. Another option, :option:`--plot=[iq,sq,fq,gr] -<-p>` turns on plotting of the final PDF or of some other result. A -side effect of the :option:`!--plot` option is that pdfgetx3 starts in -an interactive mode, so the user can manipulate or save the plots. To -put it all together, we are now going to redo the original PDF and plot -its reduced total scattering function |FQ| and the PDF curve |Gr|. This -time the chi file is not necessary, because the input file is already -listed in the gr file that is now used as a custom configuration:: - - $ pdfgetx3 -c ni300mesh_300k_nor_1-5.gr --plot=fq,gr - - WARNING:ni300mesh_300k_nor_1-5.gr already exists. - WARNING:Use "--force=yes" or "--force=once" to overwrite. - - Variables related to PDF processing: - - pdfgetter -- PDFGetter used for calculation. - config -- configuration data used by PDFGetter. - See config.inputfiles for a list of inputs. - iraw -- matrix of input raw intensities with 2 rows per file. - iq sq fq gr -- intermediate results per each input file stored - as matrix rows. - - Functions: - - tuneconfig -- dynamically tune configuration variables. - processfiles -- process specified data files. - clearsession -- clear all elements from the inputfiles, iraw, - iq, sq, fq and gr variables. - plotdata -- plot all or selected columns from a text data file. - loaddata -- load all or selected columns from a text data file. - findfiles -- search for files matching the specified patterns. - - Use "%pdfgetx3" for a fresh run without exiting IPython. - In [1]: - -This will open a plot figure similar to - -.. image:: images/nickelfqgr.png - -Because of the :doc:`interactive mode ` implied by plotting, -the program enters an IPython session. -The IPython environment is preloaded with several extra functions -and variables related to the PDF processing. For example, the -:interactvar:`config` variable stores all the configuration parameters, -and its content can be displayed with the :py:func:`print` -function as :: - - In [1]: print(config) - - configfile = ni300mesh_300k_nor_1-5.gr - configsection = DEFAULT - dataformat = twotheta - ... - qmax = 26.0 - ... - -The :py:func:`.processfiles` function allows to redo the -whole calculation and plotting process for additional input files or -for new parameter values. To plot the |FQ| and |Gr| -curves calculated at |Qmax| = 22 |Ainv|, we can call -:py:func:`!processfiles` and pass it a keyword argument for -the new qmax as follows:: - - In [2]: processfiles(qmax=22) - - # the qmax parameter was updated to a new value, thus - In [3]: config.qmax - Out[3]: 22 - -There should be now two lines in each plot axis corresponding to -the results at |Qmax| equal 26 and 22 |Ainv|. To exit the program, -type ``exit()``. - - -processing from scratch -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -We have already encountered the command-line :option:`option -c <-c>` -for specifying a custom configuration file. A special argument "NONE", -will make pdfgetx3 ignore any configuration files and start up in a -default state. We can use this feature to process the nickel PDF as if -we did not have any configuration file:: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi - - WARNING:Nothing to do, use "-t" or "--plot" options. - ERROR:Configuration error: wavelength not specified. - ERROR:See "--help" for more hints. - -There is an error, for the wavelength is necessary to convert -the scattering angle |twotheta| to momentum transfer *Q*. The -X-ray wavelength was 0.142774 Å, which can be passed with the -:option:`-w, --wavelength <-w>` option:: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 - - ... - ERROR:Configuration error: Chemical composition not known. - ERROR:See "--help" for more hints. - -There is still an error. The PDF calculation needs an average -X-ray scattering factor of the material, which is obtained from -sample chemical composition. The composition can be specified -with the :option:`--composition` option. The example -below uses a "\\\\" character to indicate the command continues -on the next line. Such syntax works in Unix terminals, but -on Windows the command has to be typed all on a single line:: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \ - --composition=Ni - - WARNING:Nothing to do, use "-t" or "--plot" options. - ... - -There was no error message this time, but the program complains -about a lack of action. The pdfgetx3 program does not write any results -unless instructed by the :option:`-t, --outputtypes <-t>` option. -The outputtypes option recognizes the following result types: -"iq", "sq", "fq", "gr". One or more of these type strings, -separated by a comma, can be included with the -:option:`!-t` option, which will produce the corresponding -output files. An empty string, such as ``-t ""``, or ``-t NONE`` -may be used to clear any outputtypes defined in the configuration file, -and avoid the unseemly file-exists warnings. - -At this point, we will not write any output files, but will use the -:option:`--plot <-p>` option to display the calculated curves. The -:option:`!--plot` accepts the same arguments as outputtypes, so to -display the |FQ| and |Gr| curves we shall run :: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \ - --composition=Ni --plot=fq,gr - - WARNING:qmaxinst reset to last nonzero point qmaxinst=28.0865680161 - WARNING:qmax reset to the data boundary qmaxinst=28.0865680161 - -which should open the following plot window: - -.. image:: images/nickelfqgrnoisy.png - -The graphs look terrible. The PDF is very noisy and the |FQ| curve -shows a sudden break at about 27 |Ainv|. What happened? The powder -intensities are inaccurate at a very top of the detector angular range. -The interactive session is setup with -:interactvar:`iraw`, :interactvar:`iq`, :interactvar:`sq`, -:interactvar:`fq`, :interactvar:`gr` -variables for the original raw data and intermediate results. We -are going to plot the "iq" variable that has the input intensities -resampled on the *Q* grid. The matplotlib function -:py:func:`~matplotlib.pyplot.clf` clears the figure, -the iq variable is a two-row matrix with *Q* and *I* rows, and the -:py:func:`~matplotlib.pyplot.axis` -function lets us zoom to a given range:: - - In [1]: clf() - In [2]: plot(iq[0], iq[1]) - Out[2]: [] - In [3]: axis([20, 29, 0, 3000]) - Out[3]: [20, 29, 0, 3000] - -The graph shows a sudden drop in the raw intensities at 27 |Ainv|. -The :confval:`qmaxinst` variable defines a *Q* cutoff for a meaningful -instrument intensities and, to be on a safe side, we are going to set -it to 26.5 |Ainv| :: - - In [4]: processfiles(qmaxinst=26.5) - WARNING:qmax reset to the data boundary qmaxinst=26.5 - -The updated curves looks reasonable without any oscillations and -breakpoints. The :py:func:`.tuneconfig` function provides a -GUI-driven way for visualizing the processing parameters and their -effect on the results. Type ``tuneconfig()`` to execute the function, -which should open a new window with several sliders. Try to move -different sliders and see how do the |FQ| and |Gr| curves change. -The :confval:`rpoly` parameter controls the degree of data-correction -polynomial and is an approximate low-*r* bound of reliable *G* -values. Once the parameters are tuned, they may be set to -exact values. We will also turn on the writing of the |Gr| -curve and save it to an output file :file:`nicmd.gr`:: - - In [14]: config.qmax = 26 - In [15]: config.outputtypes = 'gr' - In [16]: config.output = 'nicmd' - In [17]: processfiles() - - -Platinum X-ray series ------------------------------------------------------------------------- - -PDFgetX3 has been designed to handle large series of data files. -With the fast area-detectors it is easy to measure hundreds of X-ray -patterns in a time or temperature series. Normally, these input -files need to be entered as command line arguments to the pdfgetx3 -program. This is usually no problem with Unix-like shells, which -expand filename patterns to a list of matching files. -However, such file generation is in general not available on Windows. -The input file names tend to include scan numbers which are useful -for selecting desired data, yet even with Unix shells it is -difficult to match a range of scan numbers -(`z-shell `_ being a notable exception). - -.. _my-findexamples: - -matching input files -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -The :program:`pdfgetx3` program includes a built-in function for finding -a set of input files. The command line arguments are normally taken as -input file names. However, if the :option:`-f, --find <-f>` option is -present, the arguments are understood as patterns and the program looks -for files that match ALL of them. Another option -:option:`-l, --list <-l>` makes pdfgetx3 print out the matching files -without any other action, which can be used to verify if the patterns -match intended files. - -We will try out this file search on platinum example files. Open a -terminal and navigate to the :file:`Pt` directory. There should be a -:file:`series` subdirectory with 6 chi files indexed from 903 to 908. -At first, let's stay in the :file:`Pt` directory and run the following -command :: - - $ pdfgetx3 --list --find - - Pt_bulk-00055-pdfgetx2.gr - Pt_bulk-00055-pdfgetx3.gr - Pt_bulk-00055.chi - empty_capillary-00032.chi - pdfgetx3.cfg - plotpdfcomparison.py - -Without any patterns the file search matches all files in the current -directory. Now let's try to add name patterns. There are few special -patterns, for example ``^`` matches at the beginning of the filename, ``$`` at the end and ```` matches a range of integer values from -*N* to *M*. The patterns containing ``^$<>`` need to be quoted as -these characters have special meaning in the shell. Here are some -examples how it works. - -Filenames containing "y":: - - $ pdfgetx3 --list --find y - empty_capillary-00032.chi - plotpdfcomparison.py - -Filenames that containing both "y" and "chi", here we use the -options :option:`!--list` and :option:`!--find` in an abbreviated -form :option:`!-l` and :option:`!-f`:: - - $ pdfgetx3 -lf y chi - empty_capillary-00032.chi - -Filenames that start with "e":: - - $ pdfgetx3 --list --find "^e" - empty_capillary-00032.chi - -Filenames that contain *character* "2":: - - $ pdfgetx3 --list --find 2 - Pt_bulk-00055-pdfgetx2.gr - empty_capillary-00032.chi - -Filenames that contain *numeric value* "2":: - - $ pdfgetx3 -lf "<2>" - Pt_bulk-00055-pdfgetx2.gr - -The special argument ``+`` starts a new group of patterns to -generate extra files when they cannot be all covered by -a single set of patterns. For example, to match files that -contain contain both "bulk" and "chi" substrings and then -also those that have "empty" and "chi" in their names, use:: - - $ pdfgetx3 -lf bulk chi + empty chi - Pt_bulk-00055.chi - empty_capillary-00032.chi - -When pattern groups overlap the resulting matches are -made unique and each file is listed only once :: - - $ pdfgetx3 -lf bulk chi + chi - Pt_bulk-00055.chi - empty_capillary-00032.chi - - -data search path -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -Each group of PDFgetX3 patterns can have one entry containing -forward slash "/" to specify a non-current path that is searched -for input files. The path specification affects the current and -the following pattern groups unless they provide their own path. -The chi files numbered "903" to "905" and "908" from the -:file:`series` subdirectory can be therefore matched using :: - - $ pdfgetx3 -lf series/ "<903-905>" + 908 - series/Pt_bulk_ramp03-00903.chi - series/Pt_bulk_ramp03-00904.chi - series/Pt_bulk_ramp03-00905.chi - series/Pt_bulk_ramp03-00908.chi - -The current directory can be selected using `./` :: - - $ pdfgetx3 -lf series/ 903 + ./ bulk chi - series/Pt_bulk_ramp03-00903.chi - Pt_bulk-00055.chi - -When additional pattern groups contain only the path -argument, they reuse the existing set of patterns. The -".chi"-ending files in the current and :file:`series` -directories can be thus found using :: - - $ pdfgetx3 -lf ".chi$" + series/ - Pt_bulk-00055.chi - empty_capillary-00032.chi - series/Pt_bulk_ramp03-00903.chi - series/Pt_bulk_ramp03-00904.chi - series/Pt_bulk_ramp03-00905.chi - series/Pt_bulk_ramp03-00906.chi - series/Pt_bulk_ramp03-00907.chi - series/Pt_bulk_ramp03-00908.chi - - -output file names -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -By default the output files are saved in the current directory. The -output path, can be changed with the :option:`-o, --output <-o>` option. -The :option:`!-o` recognizes several tokens that are replaced with -parts of the input file name, for example, "@b" expands to an -extension-stripped base name. In similar faction, "@o" is replaced -with the output type extension. Thus to generate PDFs for all files -in the :file:`series` directory and save them in the -:file:`series-gr` subfolder do :: - - $ pdfgetx3 --find series/ "<900-910>.chi" --output=series-gr/@b.@o - -The extension ".@o" is automatic when not included anywhere in the -output file name. Thus to process the Pt series at |Qmax| = 18 |Ainv| -while saving the results in the same folder, but with a "_qmax18" suffix -in their filenames do :: - - $ pdfgetx3 --find series/ "<900-910>.chi" --qmax=18 -o series-gr/@b_qmax18 - -For input file :file:`Pt_bulk_ramp03-00903.chi` the :option:`!-o` option -above expands to output path :file:`series-gr/Pt_bulk_ramp03-00903_qmax18.gr`. -The :file:`series-gr` directory should now contain 12 "gr" files, -6 of them processed at |Qmax| = 27 |Ainv| as given by configuration -file and 6 others processed at |Qmax| = 18 |Ainv|. - -.. seealso:: :option:`-o, --output <-o>` for a list of output tokens - -.. index:: tuneconfig (example) -.. _my-tuneconfig: - -Interactive tuning of parameters ------------------------------------------------------------------------- - -One of the most powerful features of PDFgetX3 is the ability to tune -PDF processing parameters in an interactive mode and immediately -visualize their effect on the results. To demonstrate this feature, -navigate to the :file:`Ni` directory in the shell and process -the nickel PDF while plotting the |FQ| and |Gr| curves. -Because of plotting the program will open an interactive IPython -session. The tuning mode can be then entered by calling the -:py:func:`.tuneconfig` -function from the IPython environment :: - - $ pdfgetx3 --plot=fq,gr ni300mesh_300k_nor_1-5.chi - ... - In [1]: tuneconfig() - -The -:py:func:`!tuneconfig` -function will by default add a second set of live lines -for the plotted curves and open a GUI dialog with sliders for the -tunable process parameters. Changing any slider would immediately -recalculate the PDF and update live lines in the plot. - -.. image:: images/tunenickelfqgr.png - -The *constant data scale* check-box rescales the result curves to a -constant maximum value. This is useful for assessing if a parameter -change produces different curve shape or if it just rescales the -results. The tunable parameters are described in the -:ref:`PDF parameters section `. -Only the active parameters are displayed in the tuneconfig GUI, -thus there would be no slider for the :confval:`bgscale` parameter -if PDF has been processed without any background data. - -By default the -:py:func:`!tuneconfig` -function displays the same curves as -specified by the :option:`--plot <-p>` option, however it can be -configured to show arbitrary intermediate results or even visualize -selected steps in the PDF processing. We shall demonstrate this by -showing a live-plot of the polynomial correction together with the final -PDF. At first, we shall use the :py:meth:`!describe` method of the -:py:func:`.pdfgetter` object to print out the chain of -transformations involved in the PDF processing and obtain a reference to -the transformation object *t4* that applies the polynomial correction. -The transformation object can be then included in a list of plot -identifiers that are passed to the :py:func:`!tuneconfig` function :: - - $ pdfgetx3 -i ni300mesh_300k_nor_1-5.chi - ... - Use "%pdfgetx3" for a fresh run without exiting IPython. - - In [1]: fig, ax = subplots(2) - In [2]: pdfgetter.describe() - 0 TransformTwoThetaToQA - convert x data from twotheta to Q in 1/A - 1 TransformQGridRegular - Remove the data outside the (qmin, qmaxinst) range - 2 TransformBackground - subtract background intensity - 3 TransformXrayASFnormChris - scale and normalize intensities by x-ray scattering factors - 4 TransformSQnormRPoly - Normalize S(Q) by fitting a polynomial - 5 TransformSQToFQ - Convert S(Q) to F(Q). - 6 TransformFQgrid - Resample F(Q) to a regular grid suitable for FFT - 7 TransformFQToGr - Convert F(Q) to G(r). - In [3]: t4 = pdfgetter.getTransformation(4) - In [4]: tuneconfig([t4, 'gr'], axeslist=ax) - In [5]: ax[0].legend(loc=2) - -The :py:func:`~matplotlib.pyplot.subplots` function above -is to create a new figure with 2 axes on top of each other. -Overall, the code above should display the following plot -and a GUI window: - -.. image:: images/tunenickelt4gr.png - -The tuning can be finished by clicking the ``Done`` button or closing the -tuneconfig GUI window. The parameter values can be thereafter adjusted -to a rounded values by setting an attribute of the :interactvar:`config` -object, for example:: - - In [5]: config.bgscale = 1.5 - -Finally, to save the new results, we shall first confirm -:confval:`outputtypes` have been correctly set and then use the -:py:func:`.processfiles` function to redo the calculations, plots and -data output for the updated configuration. Note that the -:py:func:`!processfiles` function accepts keyword arguments for -configuration parameters. This is used at line ``In [8]`` to -turn on the :confval:`force` flag and is in effect a shortcut -for an extra ``config.force = True`` statement. :: - - In [6]: config.outputtypes - Out[6]: ['gr'] - In [7]: processfiles() - WARNING:ni300mesh_300k_nor_1-5.gr already exists. - WARNING:Use "--force=yes" or "--force=once" to overwrite. - In [8]: processfiles(force=True) - -:file:`ni300mesh_300k_nor_1-5.gr` was successfully saved at an -updated configuration for there were no warnings after the last call. - - -Neutron PDF ------------------------------------------------------------------------- - -This example illustrates PDF extraction from -neutron powder data using :ref:`pdfgetn3 `. -Navigate to the :file:`n-Sapphire` directory in the shell. -The :file:`sapphire755.dat` file contains powder diffraction data from -sapphire (α-Al\ :sub:`2`\ O\ :sub:`3`) -measured at the constant-wavelength PEARL instrument -at the Delft University of Technology. -The :file:`pdfgetn3.cfg` configuration file specifies -processing parameters such as :confval:`wavelength`, -:confval:`twothetazero`, :confval:`composition`, and :confval:`mode`. - -To extract the sapphire neutron PDF run :: - - $ pdfgetn3 --verbose=info sapphire755.dat - - INFO:applying pdfgetn3 defaults - INFO:set config.mode = neutron - INFO:searching for default config file /home/user/.pdfgetn3.cfg - INFO:searching for default config file .pdfgetn3.cfg - INFO:searching for default config file pdfgetn3.cfg - INFO:loaded default config file pdfgetn3.cfg - INFO:reset config.twothetazero = 0.0 - INFO:parsing config file section [DEFAULT] - INFO:set config.dataformat = twotheta - INFO:set config.backgroundfile = - INFO:set config.outputtypes = fq, gr - INFO:set config.mode = neutron - INFO:set config.wavelength = 1.0989 - INFO:set config.twothetazero = -0.38 - INFO:set config.composition = Al2O3 - INFO:set config.qmaxinst = 11.2 - INFO:set config.qmax = 11.2 - INFO:set config.rmin = 0.0 - INFO:set config.rmax = 20.0 - INFO:set config.rstep = 0.01 - INFO:finished parsing config file - INFO:processing command line options - INFO:set config.verbose = info - INFO:finished with command line options - INFO:using 1 input files from the command line. - INFO:configuring PDFGetter mode 'neutron' - INFO:calling config_neutron - INFO:started PDF processing. - INFO:processing 'sapphire755.dat' - INFO:resolved output file '' as 'sapphire755.fq' - INFO:written outpufile sapphire755.fq - INFO:resolved output file '' as 'sapphire755.gr' - INFO:written outpufile sapphire755.gr - INFO:elapsed time: 0.097 - -This will produce two files :file:`sapphire755.fq`, :file:`sapphire755.gr` -for the |FQ| and |Gr| functions. -To compare them with expected results use :: - - $ plotdata sapphire755-expected.fq sapphire755.fq - $ plotdata sapphire755-expected.gr sapphire755.gr - - -Fit twothetazero ------------------------------------------------------------------------- - -For a good quality PDF it is essential to use powder patterns with -accurate values of *Q*. Some instruments may produce spectra with -a slightly offset scattering angle |twotheta| which -causes inaccurate *Q* and a noticeably worse PDF. -In this example we fit a constant-wavelength neutron PDF from nickel -together with the :confval:`twothetazero` correction parameter for -diffractometer offset. -The procedure can be used to calibrate the zero correction from -a standard sample and then use it for subsequent PDF extractions. -The protocol can be also applied to fit zero correction in -a full-fledged PDF refinement in case -the zero offset may change for different samples. - -This tutorial requires either Linux or Mac OS X platforms, -because the PDF fitting is conducted with -`diffpy.cmi `__, -which is not yet available for Windows. -If diffpy.cmi is not yet installed, -we recommend to use `Anaconda Python`_ and set up a dedicated -Anaconda environment *nbcmi* for this tutorial. -This can be accomplished using the following steps:: - - $ conda create -n nbcmi -c diffpy python=2 diffpy.cmi - $ conda activate nbcmi - $ pip install path/to/diffpy.pdfgetx-VERSION.whl - -When these prerequisites are in place, -change to the :file:`n-twothetazero-fit` directory -and open the self documented Jupyter notebook as follows :: - - $ jupyter notebook fit-twothetazero.ipynb - -.. |tthzero| replace:: :confval:`!twothetazero` - -The notebook sets up and executes several PDF refinements and -compares the results from fits on uncorrected data and with -a fitted |tthzero|. -After running all cells the notebook should produce similar graphs -as in the figure below. - -.. figure:: images/twothetazerofit.* - - Refinement of nickel neutron PDF for **(a)** uncorrected data - and **(b)** with a refined zero correction. - The extracted PDFs are plotted as blue circles, - simulated PDFs as red lines and - the difference is plotted offset in green below. - -The final refined zero offset in the notebook should be approximately -0.36°. -The correction produces experimental PDF with a remarkably better fit -residual R\ :sub:`w` which is lowered from (a) 0.18 to (b) 0.05. - - -Small-angle-scattering PDF (sasPDF) ------------------------------------------------------------------------- - -Here we illustrate how to extract a PDF from small-angle-scattering (sas) data using :ref:`pdfgets3 `. -To do this, navigate to the :file:`Au_DNA_NPA` directory in your terminal. -In this folder, you will find :file:`Au_DNA_NPA.chi` and -:file:`Au_DNA_FF.chi` files which correspond to diffraction data from -DNA-capped Au nanoparticle assemblies and from a DNA-capped Au -nanoparticle colloidal solution respectively. Those two files were -measured at X21 beamline, NSLS and published in `D. Nykypanchuk, M. M. -Maye, D. van der Lelie, and O. Gang, Nature 451, 549 (2008). -`_. We thank Prof. Oleg Gang (Columbia University) for sharing this data. The :file:`pdfgets3.cfg` -configuration file specifies processing parameters such as :confval:`formfactorfile` (required by ``sas`` mode), :confval:`qmin`, :confval:`qmax`, and :confval:`mode`. - -To extract the PDF of DNA-capped DNA nanoparticle assemblies :: - - $ pdfgets3 --verbose=info Au_DNA_NPA.chi - - INFO:applying pdfgets3 defaults - INFO:set config.mode = sas - INFO:searching for default config file /home/user/.pdfgets3.cfg - INFO:searching for default config file .pdfgets3.cfg - INFO:searching for default config file pdfgets3.cfg - INFO:loaded default config file pdfgets3.cfg - INFO:reset config.twothetazero = 0.0 - INFO:parsing config file section [DEFAULT] - INFO:set config.dataformat = QA - INFO:set config.backgroundfile = - INFO:set config.datapath = [] - INFO:set config.formfactorfile = Au_DNA_FF.chi - INFO:set config.output = - INFO:set config.outputtypes = fq, gr - INFO:set config.force = yes - INFO:set config.mode = sas - INFO:set config.rpoly = 240.605 - INFO:set config.qmaxinst = 0.075 - INFO:set config.qmin = 0.01 - INFO:set config.qmax = 0.072 - INFO:set config.rmin = 100.0 - INFO:set config.rmax = 5000.0 - INFO:set config.rstep = 1.0 - INFO:set config.plot = iq, fq, gr - INFO:set config.verbose = info - INFO:finished parsing config file - INFO:processing command line options - INFO:set config.verbose = info - INFO:finished with command line options - INFO:using 1 input files from the command line. - INFO:configuring PDFGetter mode 'sas' - INFO:calling config_sas - INFO:started PDF processing. - INFO:processing 'Au_DNA_NPA.chi' - INFO:resolved output file '' as 'Au_DNA_NPA.fq' - INFO:written outpufile Au_DNA_NPA.fq - INFO:resolved output file '' as 'Au_DNA_NPA.gr' - INFO:written outpufile Au_DNA_NPA.gr - INFO:elapsed time: 0.947 - - -This will save two files :file:`Au_DNA_NPA.fq`, :file:`Au_DNA_NPA.gr` in the same directoy for the |FQ| and |Gr| functions. 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-} - -p.topic-title { - font-size: 1.1em; - font-weight: bold; - margin-top: 10px; -} - -/* -- admonitions ----------------------------------------------------------- */ - -div.admonition { - margin-top: 10px; - margin-bottom: 10px; - padding: 7px; -} - -div.admonition dt { - font-weight: bold; -} - -div.admonition dl { - margin-bottom: 0; -} - -p.admonition-title { - margin: 0px 10px 5px 0px; - font-weight: bold; -} - -div.body p.centered { - text-align: center; - margin-top: 25px; -} - -/* -- tables ---------------------------------------------------------------- */ - -table.docutils { - border: 0; - border-collapse: collapse; -} - -table.align-center { - margin-left: auto; - margin-right: auto; -} - -table.align-default { - margin-left: auto; - margin-right: auto; -} - -table caption span.caption-number { - font-style: italic; -} - -table caption span.caption-text { -} - -table.docutils td, table.docutils th { - padding: 1px 8px 1px 5px; - border-top: 0; - border-left: 0; - border-right: 0; 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- left: 0px; - z-index: 1; -} - -div.math:hover a.headerlink { - visibility: visible; -} - -/* -- printout stylesheet --------------------------------------------------- */ - -@media print { - div.document, - div.documentwrapper, - div.bodywrapper { - margin: 0 !important; - width: 100%; - } - - div.sphinxsidebar, - div.related, - div.footer, - #top-link { - display: none; - } -} \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.1.2/_static/classic.css b/static_root/doc/pdfgetx/2.1.2/_static/classic.css deleted file mode 100644 index 3496a7bb..00000000 --- a/static_root/doc/pdfgetx/2.1.2/_static/classic.css +++ /dev/null @@ -1,271 +0,0 @@ -/* - * classic.css_t - * ~~~~~~~~~~~~~ - * - * Sphinx stylesheet -- classic theme. - * - * :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS. - * :license: BSD, see LICENSE for details. - * - */ - -@import url("basic.css"); - -/* -- page layout ----------------------------------------------------------- */ - -html { - /* CSS hack for macOS's scrollbar (see #1125) */ - background-color: #FFFFFF; -} - -body { - font-family: 'Palatino', 'Palatino Linotype', 'URW Palladio L', 'Century Schoolbook L', 'Georgia', serif; - font-size: 100%; - background-color: white; - color: #000; - margin: 0; - padding: 0; -} - -div.document { - background-color: white; -} - -div.documentwrapper { - float: left; - width: 100%; -} - -div.bodywrapper { - margin: 0 0 0 230px; -} - -div.body { - background-color: white; - color: #222222; - padding: 0 20px 30px 20px; -} - -div.footer { - color: #555555; - width: 100%; - padding: 9px 0 9px 0; - text-align: center; - font-size: 75%; -} - -div.footer a { - color: #555555; - text-decoration: underline; -} - -div.related { - background-color: white; - line-height: 30px; - color: #666666; -} - -div.related a { - color: #444444; -} - -div.sphinxsidebar { -} - -div.sphinxsidebar h3 { - font-family: 'Myriad Pro', 'Trebuchet Ms', 'Segoe UI', sans-serif; - color: #444444; - font-size: 1.4em; - font-weight: normal; - margin: 0; - padding: 0; -} - -div.sphinxsidebar h3 a { - color: #444444; -} - -div.sphinxsidebar h4 { - font-family: 'Myriad Pro', 'Trebuchet Ms', 'Segoe UI', sans-serif; - color: #444444; - font-size: 1.3em; - font-weight: normal; - margin: 5px 0 0 0; - padding: 0; -} - -div.sphinxsidebar p { - color: #444444; -} - -div.sphinxsidebar p.topless { - margin: 5px 10px 10px 10px; -} - -div.sphinxsidebar ul { - margin: 10px; - padding: 0; - color: #444444; -} - -div.sphinxsidebar a { - color: #444444; -} - -div.sphinxsidebar input { - border: 1px solid #444444; - font-family: sans-serif; - font-size: 1em; -} - - -/* for collapsible sidebar */ -div#sidebarbutton { - background-color: #3c6e83; -} - - -/* -- hyperlink styles ------------------------------------------------------ */ - -a { - color: #00608f; - text-decoration: none; -} - -a:visited { - color: #30306f; - text-decoration: none; -} - -a:hover { - text-decoration: underline; -} - - - -/* -- body styles ----------------------------------------------------------- */ - -div.body h1, -div.body h2, -div.body h3, -div.body h4, -div.body h5, -div.body h6 { - font-family: 'Myriad Pro', 'Trebuchet Ms', 'Segoe UI', sans-serif; - background-color: white; - font-weight: normal; - color: #1a1a1a; - border-bottom: 1px solid #ccc; - margin: 20px -20px 10px -20px; - padding: 3px 0 3px 10px; -} - -div.body h1 { margin-top: 0; font-size: 200%; } -div.body h2 { font-size: 160%; } -div.body h3 { font-size: 140%; } -div.body h4 { font-size: 120%; } -div.body h5 { font-size: 110%; } -div.body h6 { font-size: 100%; } - -a.headerlink { - color: #aaaaaa; - font-size: 0.8em; - padding: 0 4px 0 4px; - text-decoration: none; -} - -a.headerlink:hover { - background-color: #aaaaaa; - color: white; -} - -div.body p, div.body dd, div.body li, div.body blockquote { - text-align: justify; - line-height: 130%; -} - -div.admonition p.admonition-title + p { - display: inline; -} - -div.admonition p { - margin-bottom: 5px; -} - -div.admonition pre { - margin-bottom: 5px; -} - -div.admonition ul, div.admonition ol { - margin-bottom: 5px; -} - -div.note { - background-color: #eee; - border: 1px solid #ccc; -} - -div.seealso { - background-color: #ffc; - border: 1px solid #ff6; -} - -div.topic { - background-color: #eee; -} - -div.warning { - background-color: #ffe4e4; - border: 1px solid #f66; -} - -p.admonition-title { - display: inline; -} - -p.admonition-title:after { - content: ":"; -} - -pre { - padding: 5px; - background-color: #eeffcc; - color: #333333; - line-height: 120%; - border: 1px solid #ac9; - border-left: none; - border-right: none; -} - -code { - background-color: #ecf0f3; - padding: 0 1px 0 1px; - font-size: 0.95em; -} - -th, dl.field-list > dt { - background-color: #ede; -} - -.warning code { - background: #efc2c2; -} - -.note code { - background: #d6d6d6; -} - -.viewcode-back { - font-family: 'Palatino', 'Palatino Linotype', 'URW Palladio L', 'Century Schoolbook L', 'Georgia', serif; -} - -div.viewcode-block:target { - background-color: #f4debf; - border-top: 1px solid #ac9; - border-bottom: 1px solid #ac9; -} - -div.code-block-caption { - color: #efefef; - background-color: #1c4e63; -} \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.1.2/_static/copybutton.js b/static_root/doc/pdfgetx/2.1.2/_static/copybutton.js deleted file mode 100644 index ca9f489f..00000000 --- a/static_root/doc/pdfgetx/2.1.2/_static/copybutton.js +++ /dev/null @@ -1,57 +0,0 @@ -$(document).ready(function() { - /* Add a [>>>] button on the top-right corner of code samples to hide - * the >>> and ... prompts and the output and thus make the code - * copyable. */ - var div = $('.highlight-python .highlight,' + - '.highlight-pycon .highlight,' + - '.highlight-python3 .highlight') - var pre = div.find('pre'); - - // get the styles from the current theme - pre.parent().parent().css('position', 'relative'); - var hide_text = 'Hide the prompts and output'; - var show_text = 'Show the prompts and output'; - var border_width = pre.css('border-top-width'); - var border_style = pre.css('border-top-style'); - var border_color = pre.css('border-top-color'); - var button_styles = { - 'cursor':'pointer', 'position': 'absolute', 'top': '0', 'right': '0', - 'border-color': border_color, 'border-style': border_style, - 'border-width': border_width, 'color': border_color, 'text-size': '75%', - 'font-family': 'monospace', 'padding-left': '0.2em', 'padding-right': '0.2em', - 'border-radius': '0 3px 0 0' - } - - // create and add the button to all the code blocks that contain >>> - div.each(function(index) { - var jthis = $(this); - if (jthis.find('.gp').length > 0) { - var button = $('>>>'); - button.css(button_styles) - button.attr('title', hide_text); - jthis.prepend(button); - } - // tracebacks (.gt) contain bare text elements that need to be - // wrapped in a span to work with .nextUntil() (see later) - jthis.find('pre:has(.gt)').contents().filter(function() { - return ((this.nodeType == 3) && (this.data.trim().length > 0)); - }).wrap(''); - }); - - // define the behavior of the button when it's clicked - $('.copybutton').toggle( - function() { - var button = $(this); - button.parent().find('.go, .gp, .gt').hide(); - button.next('pre').find('.gt').nextUntil('.gp, .go').css('visibility', 'hidden'); - button.css('text-decoration', 'line-through'); - button.attr('title', show_text); - }, - function() { - var button = $(this); - button.parent().find('.go, .gp, .gt').show(); - button.next('pre').find('.gt').nextUntil('.gp, .go').css('visibility', 'visible'); - button.css('text-decoration', 'none'); - button.attr('title', hide_text); - }); -}); diff --git a/static_root/doc/pdfgetx/2.1.2/_static/doctools.js b/static_root/doc/pdfgetx/2.1.2/_static/doctools.js deleted file mode 100644 index daccd209..00000000 --- a/static_root/doc/pdfgetx/2.1.2/_static/doctools.js +++ /dev/null @@ -1,315 +0,0 @@ -/* - * doctools.js - * ~~~~~~~~~~~ - * - * Sphinx JavaScript utilities for all documentation. - * - * :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS. - * :license: BSD, see LICENSE for details. - * - */ - -/** - * select a different prefix for underscore - */ -$u = _.noConflict(); - -/** - * make the code below compatible with browsers without - * an installed firebug like debugger -if (!window.console || !console.firebug) { - var names = ["log", "debug", "info", "warn", "error", "assert", "dir", - "dirxml", "group", "groupEnd", "time", "timeEnd", "count", "trace", - "profile", "profileEnd"]; - window.console = {}; - for (var i = 0; i < names.length; ++i) - window.console[names[i]] = function() {}; -} - */ - -/** - * small helper function to urldecode strings - */ -jQuery.urldecode = function(x) { - return decodeURIComponent(x).replace(/\+/g, ' '); -}; - -/** - * small helper function to urlencode strings - */ -jQuery.urlencode = encodeURIComponent; - -/** - * This function returns the parsed url parameters of the - * current request. Multiple values per key are supported, - * it will always return arrays of strings for the value parts. - */ -jQuery.getQueryParameters = function(s) { - if (typeof s === 'undefined') - s = document.location.search; - var parts = s.substr(s.indexOf('?') + 1).split('&'); - var result = {}; - for (var i = 0; i < parts.length; i++) { - var tmp = parts[i].split('=', 2); - var key = jQuery.urldecode(tmp[0]); - var value = jQuery.urldecode(tmp[1]); - if (key in result) - result[key].push(value); - else - result[key] = [value]; - } - return result; -}; - -/** - * highlight a given string on a jquery object by wrapping it in - * span elements with the given class name. - */ -jQuery.fn.highlightText = function(text, className) { - function highlight(node, addItems) { - if (node.nodeType === 3) { - var val = node.nodeValue; - var pos = val.toLowerCase().indexOf(text); - if (pos >= 0 && - !jQuery(node.parentNode).hasClass(className) && - !jQuery(node.parentNode).hasClass("nohighlight")) { - var span; - var isInSVG = jQuery(node).closest("body, svg, foreignObject").is("svg"); - if (isInSVG) { - span = document.createElementNS("http://www.w3.org/2000/svg", "tspan"); - } else { - span = document.createElement("span"); - span.className = className; - } - span.appendChild(document.createTextNode(val.substr(pos, text.length))); - node.parentNode.insertBefore(span, node.parentNode.insertBefore( - document.createTextNode(val.substr(pos + text.length)), - node.nextSibling)); - node.nodeValue = val.substr(0, pos); - if (isInSVG) { - var rect = document.createElementNS("http://www.w3.org/2000/svg", "rect"); - var bbox = node.parentElement.getBBox(); - rect.x.baseVal.value = bbox.x; - rect.y.baseVal.value = bbox.y; - rect.width.baseVal.value = bbox.width; - rect.height.baseVal.value = bbox.height; - rect.setAttribute('class', className); - addItems.push({ - "parent": node.parentNode, - "target": rect}); - } - } - } - else if (!jQuery(node).is("button, select, textarea")) { - jQuery.each(node.childNodes, function() { - highlight(this, addItems); - }); - } - } - var addItems = []; - var result = this.each(function() { - highlight(this, addItems); - }); - for (var i = 0; i < addItems.length; ++i) { - jQuery(addItems[i].parent).before(addItems[i].target); - } - return result; -}; - -/* - * backward compatibility for jQuery.browser - * This will be supported until firefox bug is fixed. - */ -if (!jQuery.browser) { - jQuery.uaMatch = function(ua) { - ua = ua.toLowerCase(); - - var match = /(chrome)[ \/]([\w.]+)/.exec(ua) || - /(webkit)[ \/]([\w.]+)/.exec(ua) || - /(opera)(?:.*version|)[ \/]([\w.]+)/.exec(ua) || - /(msie) ([\w.]+)/.exec(ua) || - ua.indexOf("compatible") < 0 && /(mozilla)(?:.*? rv:([\w.]+)|)/.exec(ua) || - []; - - return { - browser: match[ 1 ] || "", - version: match[ 2 ] || "0" - }; - }; - jQuery.browser = {}; - jQuery.browser[jQuery.uaMatch(navigator.userAgent).browser] = true; -} - -/** - * Small JavaScript module for the documentation. - */ -var Documentation = { - - init : function() { - this.fixFirefoxAnchorBug(); - this.highlightSearchWords(); - this.initIndexTable(); - if (DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS) { - this.initOnKeyListeners(); - } - }, - - /** - * i18n support - */ - TRANSLATIONS : {}, - PLURAL_EXPR : function(n) { return n === 1 ? 0 : 1; }, - LOCALE : 'unknown', - - // gettext and ngettext don't access this so that the functions - // can safely bound to a different name (_ = Documentation.gettext) - gettext : function(string) { - var translated = Documentation.TRANSLATIONS[string]; - if (typeof translated === 'undefined') - return string; - return (typeof translated === 'string') ? translated : translated[0]; - }, - - ngettext : function(singular, plural, n) { - var translated = Documentation.TRANSLATIONS[singular]; - if (typeof translated === 'undefined') - return (n == 1) ? singular : plural; - return translated[Documentation.PLURALEXPR(n)]; - }, - - addTranslations : function(catalog) { - for (var key in catalog.messages) - this.TRANSLATIONS[key] = catalog.messages[key]; - this.PLURAL_EXPR = new Function('n', 'return +(' + catalog.plural_expr + ')'); - this.LOCALE = catalog.locale; - }, - - /** - * add context elements like header anchor links - */ - addContextElements : function() { - $('div[id] > :header:first').each(function() { - $('\u00B6'). - attr('href', '#' + this.id). - attr('title', _('Permalink to this headline')). - appendTo(this); - }); - $('dt[id]').each(function() { - $('\u00B6'). - attr('href', '#' + this.id). - attr('title', _('Permalink to this definition')). - appendTo(this); - }); - }, - - /** - * workaround a firefox stupidity - * see: https://bugzilla.mozilla.org/show_bug.cgi?id=645075 - */ - fixFirefoxAnchorBug : function() { - if (document.location.hash && $.browser.mozilla) - window.setTimeout(function() { - document.location.href += ''; - }, 10); - }, - - /** - * highlight the search words provided in the url in the text - */ - highlightSearchWords : function() { - var params = $.getQueryParameters(); - var terms = (params.highlight) ? params.highlight[0].split(/\s+/) : []; - if (terms.length) { - var body = $('div.body'); - if (!body.length) { - body = $('body'); - } - window.setTimeout(function() { - $.each(terms, function() { - body.highlightText(this.toLowerCase(), 'highlighted'); - }); - }, 10); - $('

    ' + _('Hide Search Matches') + '

    ') - .appendTo($('#searchbox')); - } - }, - - /** - * init the domain index toggle buttons - */ - initIndexTable : function() { - var togglers = $('img.toggler').click(function() { - var src = $(this).attr('src'); - var idnum = $(this).attr('id').substr(7); - $('tr.cg-' + idnum).toggle(); - if (src.substr(-9) === 'minus.png') - $(this).attr('src', src.substr(0, src.length-9) + 'plus.png'); - else - $(this).attr('src', src.substr(0, src.length-8) + 'minus.png'); - }).css('display', ''); - if (DOCUMENTATION_OPTIONS.COLLAPSE_INDEX) { - togglers.click(); - } - }, - - /** - * helper function to hide the search marks again - */ - hideSearchWords : function() { - $('#searchbox .highlight-link').fadeOut(300); - $('span.highlighted').removeClass('highlighted'); - }, - - /** - * make the url absolute - */ - makeURL : function(relativeURL) { - return DOCUMENTATION_OPTIONS.URL_ROOT + '/' + relativeURL; - }, - - /** - * get the current relative url - */ - getCurrentURL : function() { - var path = document.location.pathname; - var parts = path.split(/\//); - $.each(DOCUMENTATION_OPTIONS.URL_ROOT.split(/\//), function() { - if (this === '..') - parts.pop(); - }); - var url = parts.join('/'); - return path.substring(url.lastIndexOf('/') + 1, path.length - 1); - }, - - initOnKeyListeners: function() { - $(document).keydown(function(event) { - var activeElementType = document.activeElement.tagName; - // don't navigate when in search box or textarea - if (activeElementType !== 'TEXTAREA' && activeElementType !== 'INPUT' && activeElementType !== 'SELECT' - && !event.altKey && !event.ctrlKey && !event.metaKey && !event.shiftKey) { - switch (event.keyCode) { - case 37: // left - var prevHref = $('link[rel="prev"]').prop('href'); - if (prevHref) { - window.location.href = prevHref; - return false; - } - case 39: // right - var nextHref = $('link[rel="next"]').prop('href'); - if (nextHref) { - window.location.href = nextHref; - return false; - } - } - } - }); - } -}; - -// quick alias for translations -_ = Documentation.gettext; - -$(document).ready(function() { - Documentation.init(); -}); diff --git a/static_root/doc/pdfgetx/2.1.2/_static/documentation_options.js b/static_root/doc/pdfgetx/2.1.2/_static/documentation_options.js deleted file mode 100644 index ec3d5cf2..00000000 --- a/static_root/doc/pdfgetx/2.1.2/_static/documentation_options.js +++ /dev/null @@ -1,11 +0,0 @@ -var DOCUMENTATION_OPTIONS = { - URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'), - VERSION: '2.1.2', - LANGUAGE: 'None', - COLLAPSE_INDEX: false, - BUILDER: 'html', - FILE_SUFFIX: '.html', - HAS_SOURCE: true, - SOURCELINK_SUFFIX: '.txt', - NAVIGATION_WITH_KEYS: true -}; \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.1.2/_static/favicon.png b/static_root/doc/pdfgetx/2.1.2/_static/favicon.png deleted file mode 100644 index 93e4a02c..00000000 Binary files a/static_root/doc/pdfgetx/2.1.2/_static/favicon.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.1.2/_static/file.png b/static_root/doc/pdfgetx/2.1.2/_static/file.png deleted file mode 100644 index a858a410..00000000 Binary files a/static_root/doc/pdfgetx/2.1.2/_static/file.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.1.2/_static/jquery-3.4.1.js b/static_root/doc/pdfgetx/2.1.2/_static/jquery-3.4.1.js deleted file mode 100644 index 773ad95c..00000000 --- a/static_root/doc/pdfgetx/2.1.2/_static/jquery-3.4.1.js +++ /dev/null @@ -1,10598 +0,0 @@ -/*! - * jQuery JavaScript Library v3.4.1 - * https://jquery.com/ - * - * Includes Sizzle.js - * https://sizzlejs.com/ - * - * Copyright JS Foundation and other contributors - * Released under the MIT license - * https://jquery.org/license - * - * Date: 2019-05-01T21:04Z - */ -( function( global, factory ) { - - "use strict"; - - if ( typeof module === "object" && typeof module.exports === "object" ) { - - // For CommonJS and CommonJS-like environments where a proper `window` - // is present, execute the factory and get jQuery. - // For environments that do not have a `window` with a `document` - // (such as Node.js), expose a factory as module.exports. - // This accentuates the need for the creation of a real `window`. - // e.g. var jQuery = require("jquery")(window); - // See ticket #14549 for more info. - module.exports = global.document ? - factory( global, true ) : - function( w ) { - if ( !w.document ) { - throw new Error( "jQuery requires a window with a document" ); - } - return factory( w ); - }; - } else { - factory( global ); - } - -// Pass this if window is not defined yet -} )( typeof window !== "undefined" ? window : this, function( window, noGlobal ) { - -// Edge <= 12 - 13+, Firefox <=18 - 45+, IE 10 - 11, Safari 5.1 - 9+, iOS 6 - 9.1 -// throw exceptions when non-strict code (e.g., ASP.NET 4.5) accesses strict mode -// arguments.callee.caller (trac-13335). But as of jQuery 3.0 (2016), strict mode should be common -// enough that all such attempts are guarded in a try block. -"use strict"; - -var arr = []; - -var document = window.document; - -var getProto = Object.getPrototypeOf; - -var slice = arr.slice; - -var concat = arr.concat; - -var push = arr.push; - -var indexOf = arr.indexOf; - -var class2type = {}; - -var toString = class2type.toString; - -var hasOwn = class2type.hasOwnProperty; - -var fnToString = hasOwn.toString; - -var ObjectFunctionString = fnToString.call( Object ); - -var support = {}; - -var isFunction = function isFunction( obj ) { - - // Support: Chrome <=57, Firefox <=52 - // In some browsers, typeof returns "function" for HTML elements - // (i.e., `typeof document.createElement( "object" ) === "function"`). - // We don't want to classify *any* DOM node as a function. - return typeof obj === "function" && typeof obj.nodeType !== "number"; - }; - - -var isWindow = function isWindow( obj ) { - return obj != null && obj === obj.window; - }; - - - - - var preservedScriptAttributes = { - type: true, - src: true, - nonce: true, - noModule: true - }; - - function DOMEval( code, node, doc ) { - doc = doc || document; - - var i, val, - script = doc.createElement( "script" ); - - script.text = code; - if ( node ) { - for ( i in preservedScriptAttributes ) { - - // Support: Firefox 64+, Edge 18+ - // Some browsers don't support the "nonce" property on scripts. - // On the other hand, just using `getAttribute` is not enough as - // the `nonce` attribute is reset to an empty string whenever it - // becomes browsing-context connected. - // See https://github.com/whatwg/html/issues/2369 - // See https://html.spec.whatwg.org/#nonce-attributes - // The `node.getAttribute` check was added for the sake of - // `jQuery.globalEval` so that it can fake a nonce-containing node - // via an object. - val = node[ i ] || node.getAttribute && node.getAttribute( i ); - if ( val ) { - script.setAttribute( i, val ); - } - } - } - doc.head.appendChild( script ).parentNode.removeChild( script ); - } - - -function toType( obj ) { - if ( obj == null ) { - return obj + ""; - } - - // Support: Android <=2.3 only (functionish RegExp) - return typeof obj === "object" || typeof obj === "function" ? - class2type[ toString.call( obj ) ] || "object" : - typeof obj; -} -/* global Symbol */ -// Defining this global in .eslintrc.json would create a danger of using the global -// unguarded in another place, it seems safer to define global only for this module - - - -var - version = "3.4.1", - - // Define a local copy of jQuery - jQuery = function( selector, context ) { - - // The jQuery object is actually just the init constructor 'enhanced' - // Need init if jQuery is called (just allow error to be thrown if not included) - return new jQuery.fn.init( selector, context ); - }, - - // Support: Android <=4.0 only - // Make sure we trim BOM and NBSP - rtrim = /^[\s\uFEFF\xA0]+|[\s\uFEFF\xA0]+$/g; - -jQuery.fn = jQuery.prototype = { - - // The current version of jQuery being used - jquery: version, - - constructor: jQuery, - - // The default length of a jQuery object is 0 - length: 0, - - toArray: function() { - return slice.call( this ); - }, - - // Get the Nth element in the matched element set OR - // Get the whole matched element set as a clean array - get: function( num ) { - - // Return all the elements in a clean array - if ( num == null ) { - return slice.call( this ); - } - - // Return just the one element from the set - return num < 0 ? this[ num + this.length ] : this[ num ]; - }, - - // Take an array of elements and push it onto the stack - // (returning the new matched element set) - pushStack: function( elems ) { - - // Build a new jQuery matched element set - var ret = jQuery.merge( this.constructor(), elems ); - - // Add the old object onto the stack (as a reference) - ret.prevObject = this; - - // Return the newly-formed element set - return ret; - }, - - // Execute a callback for every element in the matched set. - each: function( callback ) { - return jQuery.each( this, callback ); - }, - - map: function( callback ) { - return this.pushStack( jQuery.map( this, function( elem, i ) { - return callback.call( elem, i, elem ); - } ) ); - }, - - slice: function() { - return this.pushStack( slice.apply( this, arguments ) ); - }, - - first: function() { - return this.eq( 0 ); - }, - - last: function() { - return this.eq( -1 ); - }, - - eq: function( i ) { - var len = this.length, - j = +i + ( i < 0 ? len : 0 ); - return this.pushStack( j >= 0 && j < len ? [ this[ j ] ] : [] ); - }, - - end: function() { - return this.prevObject || this.constructor(); - }, - - // For internal use only. - // Behaves like an Array's method, not like a jQuery method. - push: push, - sort: arr.sort, - splice: arr.splice -}; - -jQuery.extend = jQuery.fn.extend = function() { - var options, name, src, copy, copyIsArray, clone, - target = arguments[ 0 ] || {}, - i = 1, - length = arguments.length, - deep = false; - - // Handle a deep copy situation - if ( typeof target === "boolean" ) { - deep = target; - - // Skip the boolean and the target - target = arguments[ i ] || {}; - i++; - } - - // Handle case when target is a string or something (possible in deep copy) - if ( typeof target !== "object" && !isFunction( target ) ) { - target = {}; - } - - // Extend jQuery itself if only one argument is passed - if ( i === length ) { - target = this; - i--; - } - - for ( ; i < length; i++ ) { - - // Only deal with non-null/undefined values - if ( ( options = arguments[ i ] ) != null ) { - - // Extend the base object - for ( name in options ) { - copy = options[ name ]; - - // Prevent Object.prototype pollution - // Prevent never-ending loop - if ( name === "__proto__" || target === copy ) { - continue; - } - - // Recurse if we're merging plain objects or arrays - if ( deep && copy && ( jQuery.isPlainObject( copy ) || - ( copyIsArray = Array.isArray( copy ) ) ) ) { - src = target[ name ]; - - // Ensure proper type for the source value - if ( copyIsArray && !Array.isArray( src ) ) { - clone = []; - } else if ( !copyIsArray && !jQuery.isPlainObject( src ) ) { - clone = {}; - } else { - clone = src; - } - copyIsArray = false; - - // Never move original objects, clone them - target[ name ] = jQuery.extend( deep, clone, copy ); - - // Don't bring in undefined values - } else if ( copy !== undefined ) { - target[ name ] = copy; - } - } - } - } - - // Return the modified object - return target; -}; - -jQuery.extend( { - - // Unique for each copy of jQuery on the page - expando: "jQuery" + ( version + Math.random() ).replace( /\D/g, "" ), - - // Assume jQuery is ready without the ready module - isReady: true, - - error: function( msg ) { - throw new Error( msg ); - }, - - noop: function() {}, - - isPlainObject: function( obj ) { - var proto, Ctor; - - // Detect obvious negatives - // Use toString instead of jQuery.type to catch host objects - if ( !obj || toString.call( obj ) !== "[object Object]" ) { - return false; - } - - proto = getProto( obj ); - - // Objects with no prototype (e.g., `Object.create( null )`) are plain - if ( !proto ) { - return true; - } - - // Objects with prototype are plain iff they were constructed by a global Object function - Ctor = hasOwn.call( proto, "constructor" ) && proto.constructor; - return typeof Ctor === "function" && fnToString.call( Ctor ) === ObjectFunctionString; - }, - - isEmptyObject: function( obj ) { - var name; - - for ( name in obj ) { - return false; - } - return true; - }, - - // Evaluates a script in a global context - globalEval: function( code, options ) { - DOMEval( code, { nonce: options && options.nonce } ); - }, - - each: function( obj, callback ) { - var length, i = 0; - - if ( isArrayLike( obj ) ) { - length = obj.length; - for ( ; i < length; i++ ) { - if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) { - break; - } - } - } else { - for ( i in obj ) { - if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) { - break; - } - } - } - - return obj; - }, - - // Support: Android <=4.0 only - trim: function( text ) { - return text == null ? - "" : - ( text + "" ).replace( rtrim, "" ); - }, - - // results is for internal usage only - makeArray: function( arr, results ) { - var ret = results || []; - - if ( arr != null ) { - if ( isArrayLike( Object( arr ) ) ) { - jQuery.merge( ret, - typeof arr === "string" ? - [ arr ] : arr - ); - } else { - push.call( ret, arr ); - } - } - - return ret; - }, - - inArray: function( elem, arr, i ) { - return arr == null ? -1 : indexOf.call( arr, elem, i ); - }, - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - merge: function( first, second ) { - var len = +second.length, - j = 0, - i = first.length; - - for ( ; j < len; j++ ) { - first[ i++ ] = second[ j ]; - } - - first.length = i; - - return first; - }, - - grep: function( elems, callback, invert ) { - var callbackInverse, - matches = [], - i = 0, - length = elems.length, - callbackExpect = !invert; - - // Go through the array, only saving the items - // that pass the validator function - for ( ; i < length; i++ ) { - callbackInverse = !callback( elems[ i ], i ); - if ( callbackInverse !== callbackExpect ) { - matches.push( elems[ i ] ); - } - } - - return matches; - }, - - // arg is for internal usage only - map: function( elems, callback, arg ) { - var length, value, - i = 0, - ret = []; - - // Go through the array, translating each of the items to their new values - if ( isArrayLike( elems ) ) { - length = elems.length; - for ( ; i < length; i++ ) { - value = callback( elems[ i ], i, arg ); - - if ( value != null ) { - ret.push( value ); - } - } - - // Go through every key on the object, - } else { - for ( i in elems ) { - value = callback( elems[ i ], i, arg ); - - if ( value != null ) { - ret.push( value ); - } - } - } - - // Flatten any nested arrays - return concat.apply( [], ret ); - }, - - // A global GUID counter for objects - guid: 1, - - // jQuery.support is not used in Core but other projects attach their - // properties to it so it needs to exist. - support: support -} ); - -if ( typeof Symbol === "function" ) { - jQuery.fn[ Symbol.iterator ] = arr[ Symbol.iterator ]; -} - -// Populate the class2type map -jQuery.each( "Boolean Number String Function Array Date RegExp Object Error Symbol".split( " " ), -function( i, name ) { - class2type[ "[object " + name + "]" ] = name.toLowerCase(); -} ); - -function isArrayLike( obj ) { - - // Support: real iOS 8.2 only (not reproducible in simulator) - // `in` check used to prevent JIT error (gh-2145) - // hasOwn isn't used here due to false negatives - // regarding Nodelist length in IE - var length = !!obj && "length" in obj && obj.length, - type = toType( obj ); - - if ( isFunction( obj ) || isWindow( obj ) ) { - return false; - } - - return type === "array" || length === 0 || - typeof length === "number" && length > 0 && ( length - 1 ) in obj; -} -var Sizzle = -/*! - * Sizzle CSS Selector Engine v2.3.4 - * https://sizzlejs.com/ - * - * Copyright JS Foundation and other contributors - * Released under the MIT license - * https://js.foundation/ - * - * Date: 2019-04-08 - */ -(function( window ) { - -var i, - support, - Expr, - getText, - isXML, - tokenize, - compile, - select, - outermostContext, - sortInput, - hasDuplicate, - - // Local document vars - setDocument, - document, - docElem, - documentIsHTML, - rbuggyQSA, - rbuggyMatches, - matches, - contains, - - // Instance-specific data - expando = "sizzle" + 1 * new Date(), - preferredDoc = window.document, - dirruns = 0, - done = 0, - classCache = createCache(), - tokenCache = createCache(), - compilerCache = createCache(), - nonnativeSelectorCache = createCache(), - sortOrder = function( a, b ) { - if ( a === b ) { - hasDuplicate = true; - } - return 0; - }, - - // Instance methods - hasOwn = ({}).hasOwnProperty, - arr = [], - pop = arr.pop, - push_native = arr.push, - push = arr.push, - slice = arr.slice, - // Use a stripped-down indexOf as it's faster than native - // https://jsperf.com/thor-indexof-vs-for/5 - indexOf = function( list, elem ) { - var i = 0, - len = list.length; - for ( ; i < len; i++ ) { - if ( list[i] === elem ) { - return i; - } - } - return -1; - }, - - booleans = "checked|selected|async|autofocus|autoplay|controls|defer|disabled|hidden|ismap|loop|multiple|open|readonly|required|scoped", - - // Regular expressions - - // http://www.w3.org/TR/css3-selectors/#whitespace - whitespace = "[\\x20\\t\\r\\n\\f]", - - // http://www.w3.org/TR/CSS21/syndata.html#value-def-identifier - identifier = "(?:\\\\.|[\\w-]|[^\0-\\xa0])+", - - // Attribute selectors: http://www.w3.org/TR/selectors/#attribute-selectors - attributes = "\\[" + whitespace + "*(" + identifier + ")(?:" + whitespace + - // Operator (capture 2) - "*([*^$|!~]?=)" + whitespace + - // "Attribute values must be CSS identifiers [capture 5] or strings [capture 3 or capture 4]" - "*(?:'((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\"|(" + identifier + "))|)" + whitespace + - "*\\]", - - pseudos = ":(" + identifier + ")(?:\\((" + - // To reduce the number of selectors needing tokenize in the preFilter, prefer arguments: - // 1. quoted (capture 3; capture 4 or capture 5) - "('((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\")|" + - // 2. simple (capture 6) - "((?:\\\\.|[^\\\\()[\\]]|" + attributes + ")*)|" + - // 3. anything else (capture 2) - ".*" + - ")\\)|)", - - // Leading and non-escaped trailing whitespace, capturing some non-whitespace characters preceding the latter - rwhitespace = new RegExp( whitespace + "+", "g" ), - rtrim = new RegExp( "^" + whitespace + "+|((?:^|[^\\\\])(?:\\\\.)*)" + whitespace + "+$", "g" ), - - rcomma = new RegExp( "^" + whitespace + "*," + whitespace + "*" ), - rcombinators = new RegExp( "^" + whitespace + "*([>+~]|" + whitespace + ")" + whitespace + "*" ), - rdescend = new RegExp( whitespace + "|>" ), - - rpseudo = new RegExp( pseudos ), - ridentifier = new RegExp( "^" + identifier + "$" ), - - matchExpr = { - "ID": new RegExp( "^#(" + identifier + ")" ), - "CLASS": new RegExp( "^\\.(" + identifier + ")" ), - "TAG": new RegExp( "^(" + identifier + "|[*])" ), - "ATTR": new RegExp( "^" + attributes ), - "PSEUDO": new RegExp( "^" + pseudos ), - "CHILD": new RegExp( "^:(only|first|last|nth|nth-last)-(child|of-type)(?:\\(" + whitespace + - "*(even|odd|(([+-]|)(\\d*)n|)" + whitespace + "*(?:([+-]|)" + whitespace + - "*(\\d+)|))" + whitespace + "*\\)|)", "i" ), - "bool": new RegExp( "^(?:" + booleans + ")$", "i" ), - // For use in libraries implementing .is() - // We use this for POS matching in `select` - "needsContext": new RegExp( "^" + whitespace + "*[>+~]|:(even|odd|eq|gt|lt|nth|first|last)(?:\\(" + - whitespace + "*((?:-\\d)?\\d*)" + whitespace + "*\\)|)(?=[^-]|$)", "i" ) - }, - - rhtml = /HTML$/i, - rinputs = /^(?:input|select|textarea|button)$/i, - rheader = /^h\d$/i, - - rnative = /^[^{]+\{\s*\[native \w/, - - // Easily-parseable/retrievable ID or TAG or CLASS selectors - rquickExpr = /^(?:#([\w-]+)|(\w+)|\.([\w-]+))$/, - - rsibling = /[+~]/, - - // CSS escapes - // http://www.w3.org/TR/CSS21/syndata.html#escaped-characters - runescape = new RegExp( "\\\\([\\da-f]{1,6}" + whitespace + "?|(" + whitespace + ")|.)", "ig" ), - funescape = function( _, escaped, escapedWhitespace ) { - var high = "0x" + escaped - 0x10000; - // NaN means non-codepoint - // Support: Firefox<24 - // Workaround erroneous numeric interpretation of +"0x" - return high !== high || escapedWhitespace ? - escaped : - high < 0 ? - // BMP codepoint - String.fromCharCode( high + 0x10000 ) : - // Supplemental Plane codepoint (surrogate pair) - String.fromCharCode( high >> 10 | 0xD800, high & 0x3FF | 0xDC00 ); - }, - - // CSS string/identifier serialization - // https://drafts.csswg.org/cssom/#common-serializing-idioms - rcssescape = /([\0-\x1f\x7f]|^-?\d)|^-$|[^\0-\x1f\x7f-\uFFFF\w-]/g, - fcssescape = function( ch, asCodePoint ) { - if ( asCodePoint ) { - - // U+0000 NULL becomes U+FFFD REPLACEMENT CHARACTER - if ( ch === "\0" ) { - return "\uFFFD"; - } - - // Control characters and (dependent upon position) numbers get escaped as code points - return ch.slice( 0, -1 ) + "\\" + ch.charCodeAt( ch.length - 1 ).toString( 16 ) + " "; - } - - // Other potentially-special ASCII characters get backslash-escaped - return "\\" + ch; - }, - - // Used for iframes - // See setDocument() - // Removing the function wrapper causes a "Permission Denied" - // error in IE - unloadHandler = function() { - setDocument(); - }, - - inDisabledFieldset = addCombinator( - function( elem ) { - return elem.disabled === true && elem.nodeName.toLowerCase() === "fieldset"; - }, - { dir: "parentNode", next: "legend" } - ); - -// Optimize for push.apply( _, NodeList ) -try { - push.apply( - (arr = slice.call( preferredDoc.childNodes )), - preferredDoc.childNodes - ); - // Support: Android<4.0 - // Detect silently failing push.apply - arr[ preferredDoc.childNodes.length ].nodeType; -} catch ( e ) { - push = { apply: arr.length ? - - // Leverage slice if possible - function( target, els ) { - push_native.apply( target, slice.call(els) ); - } : - - // Support: IE<9 - // Otherwise append directly - function( target, els ) { - var j = target.length, - i = 0; - // Can't trust NodeList.length - while ( (target[j++] = els[i++]) ) {} - target.length = j - 1; - } - }; -} - -function Sizzle( selector, context, results, seed ) { - var m, i, elem, nid, match, groups, newSelector, - newContext = context && context.ownerDocument, - - // nodeType defaults to 9, since context defaults to document - nodeType = context ? context.nodeType : 9; - - results = results || []; - - // Return early from calls with invalid selector or context - if ( typeof selector !== "string" || !selector || - nodeType !== 1 && nodeType !== 9 && nodeType !== 11 ) { - - return results; - } - - // Try to shortcut find operations (as opposed to filters) in HTML documents - if ( !seed ) { - - if ( ( context ? context.ownerDocument || context : preferredDoc ) !== document ) { - setDocument( context ); - } - context = context || document; - - if ( documentIsHTML ) { - - // If the selector is sufficiently simple, try using a "get*By*" DOM method - // (excepting DocumentFragment context, where the methods don't exist) - if ( nodeType !== 11 && (match = rquickExpr.exec( selector )) ) { - - // ID selector - if ( (m = match[1]) ) { - - // Document context - if ( nodeType === 9 ) { - if ( (elem = context.getElementById( m )) ) { - - // Support: IE, Opera, Webkit - // TODO: identify versions - // getElementById can match elements by name instead of ID - if ( elem.id === m ) { - results.push( elem ); - return results; - } - } else { - return results; - } - - // Element context - } else { - - // Support: IE, Opera, Webkit - // TODO: identify versions - // getElementById can match elements by name instead of ID - if ( newContext && (elem = newContext.getElementById( m )) && - contains( context, elem ) && - elem.id === m ) { - - results.push( elem ); - return results; - } - } - - // Type selector - } else if ( match[2] ) { - push.apply( results, context.getElementsByTagName( selector ) ); - return results; - - // Class selector - } else if ( (m = match[3]) && support.getElementsByClassName && - context.getElementsByClassName ) { - - push.apply( results, context.getElementsByClassName( m ) ); - return results; - } - } - - // Take advantage of querySelectorAll - if ( support.qsa && - !nonnativeSelectorCache[ selector + " " ] && - (!rbuggyQSA || !rbuggyQSA.test( selector )) && - - // Support: IE 8 only - // Exclude object elements - (nodeType !== 1 || context.nodeName.toLowerCase() !== "object") ) { - - newSelector = selector; - newContext = context; - - // qSA considers elements outside a scoping root when evaluating child or - // descendant combinators, which is not what we want. - // In such cases, we work around the behavior by prefixing every selector in the - // list with an ID selector referencing the scope context. - // Thanks to Andrew Dupont for this technique. - if ( nodeType === 1 && rdescend.test( selector ) ) { - - // Capture the context ID, setting it first if necessary - if ( (nid = context.getAttribute( "id" )) ) { - nid = nid.replace( rcssescape, fcssescape ); - } else { - context.setAttribute( "id", (nid = expando) ); - } - - // Prefix every selector in the list - groups = tokenize( selector ); - i = groups.length; - while ( i-- ) { - groups[i] = "#" + nid + " " + toSelector( groups[i] ); - } - newSelector = groups.join( "," ); - - // Expand context for sibling selectors - newContext = rsibling.test( selector ) && testContext( context.parentNode ) || - context; - } - - try { - push.apply( results, - newContext.querySelectorAll( newSelector ) - ); - return results; - } catch ( qsaError ) { - nonnativeSelectorCache( selector, true ); - } finally { - if ( nid === expando ) { - context.removeAttribute( "id" ); - } - } - } - } - } - - // All others - return select( selector.replace( rtrim, "$1" ), context, results, seed ); -} - -/** - * Create key-value caches of limited size - * @returns {function(string, object)} Returns the Object data after storing it on itself with - * property name the (space-suffixed) string and (if the cache is larger than Expr.cacheLength) - * deleting the oldest entry - */ -function createCache() { - var keys = []; - - function cache( key, value ) { - // Use (key + " ") to avoid collision with native prototype properties (see Issue #157) - if ( keys.push( key + " " ) > Expr.cacheLength ) { - // Only keep the most recent entries - delete cache[ keys.shift() ]; - } - return (cache[ key + " " ] = value); - } - return cache; -} - -/** - * Mark a function for special use by Sizzle - * @param {Function} fn The function to mark - */ -function markFunction( fn ) { - fn[ expando ] = true; - return fn; -} - -/** - * Support testing using an element - * @param {Function} fn Passed the created element and returns a boolean result - */ -function assert( fn ) { - var el = document.createElement("fieldset"); - - try { - return !!fn( el ); - } catch (e) { - return false; - } finally { - // Remove from its parent by default - if ( el.parentNode ) { - el.parentNode.removeChild( el ); - } - // release memory in IE - el = null; - } -} - -/** - * Adds the same handler for all of the specified attrs - * @param {String} attrs Pipe-separated list of attributes - * @param {Function} handler The method that will be applied - */ -function addHandle( attrs, handler ) { - var arr = attrs.split("|"), - i = arr.length; - - while ( i-- ) { - Expr.attrHandle[ arr[i] ] = handler; - } -} - -/** - * Checks document order of two siblings - * @param {Element} a - * @param {Element} b - * @returns {Number} Returns less than 0 if a precedes b, greater than 0 if a follows b - */ -function siblingCheck( a, b ) { - var cur = b && a, - diff = cur && a.nodeType === 1 && b.nodeType === 1 && - a.sourceIndex - b.sourceIndex; - - // Use IE sourceIndex if available on both nodes - if ( diff ) { - return diff; - } - - // Check if b follows a - if ( cur ) { - while ( (cur = cur.nextSibling) ) { - if ( cur === b ) { - return -1; - } - } - } - - return a ? 1 : -1; -} - -/** - * Returns a function to use in pseudos for input types - * @param {String} type - */ -function createInputPseudo( type ) { - return function( elem ) { - var name = elem.nodeName.toLowerCase(); - return name === "input" && elem.type === type; - }; -} - -/** - * Returns a function to use in pseudos for buttons - * @param {String} type - */ -function createButtonPseudo( type ) { - return function( elem ) { - var name = elem.nodeName.toLowerCase(); - return (name === "input" || name === "button") && elem.type === type; - }; -} - -/** - * Returns a function to use in pseudos for :enabled/:disabled - * @param {Boolean} disabled true for :disabled; false for :enabled - */ -function createDisabledPseudo( disabled ) { - - // Known :disabled false positives: fieldset[disabled] > legend:nth-of-type(n+2) :can-disable - return function( elem ) { - - // Only certain elements can match :enabled or :disabled - // https://html.spec.whatwg.org/multipage/scripting.html#selector-enabled - // https://html.spec.whatwg.org/multipage/scripting.html#selector-disabled - if ( "form" in elem ) { - - // Check for inherited disabledness on relevant non-disabled elements: - // * listed form-associated elements in a disabled fieldset - // https://html.spec.whatwg.org/multipage/forms.html#category-listed - // https://html.spec.whatwg.org/multipage/forms.html#concept-fe-disabled - // * option elements in a disabled optgroup - // https://html.spec.whatwg.org/multipage/forms.html#concept-option-disabled - // All such elements have a "form" property. - if ( elem.parentNode && elem.disabled === false ) { - - // Option elements defer to a parent optgroup if present - if ( "label" in elem ) { - if ( "label" in elem.parentNode ) { - return elem.parentNode.disabled === disabled; - } else { - return elem.disabled === disabled; - } - } - - // Support: IE 6 - 11 - // Use the isDisabled shortcut property to check for disabled fieldset ancestors - return elem.isDisabled === disabled || - - // Where there is no isDisabled, check manually - /* jshint -W018 */ - elem.isDisabled !== !disabled && - inDisabledFieldset( elem ) === disabled; - } - - return elem.disabled === disabled; - - // Try to winnow out elements that can't be disabled before trusting the disabled property. - // Some victims get caught in our net (label, legend, menu, track), but it shouldn't - // even exist on them, let alone have a boolean value. - } else if ( "label" in elem ) { - return elem.disabled === disabled; - } - - // Remaining elements are neither :enabled nor :disabled - return false; - }; -} - -/** - * Returns a function to use in pseudos for positionals - * @param {Function} fn - */ -function createPositionalPseudo( fn ) { - return markFunction(function( argument ) { - argument = +argument; - return markFunction(function( seed, matches ) { - var j, - matchIndexes = fn( [], seed.length, argument ), - i = matchIndexes.length; - - // Match elements found at the specified indexes - while ( i-- ) { - if ( seed[ (j = matchIndexes[i]) ] ) { - seed[j] = !(matches[j] = seed[j]); - } - } - }); - }); -} - -/** - * Checks a node for validity as a Sizzle context - * @param {Element|Object=} context - * @returns {Element|Object|Boolean} The input node if acceptable, otherwise a falsy value - */ -function testContext( context ) { - return context && typeof context.getElementsByTagName !== "undefined" && context; -} - -// Expose support vars for convenience -support = Sizzle.support = {}; - -/** - * Detects XML nodes - * @param {Element|Object} elem An element or a document - * @returns {Boolean} True iff elem is a non-HTML XML node - */ -isXML = Sizzle.isXML = function( elem ) { - var namespace = elem.namespaceURI, - docElem = (elem.ownerDocument || elem).documentElement; - - // Support: IE <=8 - // Assume HTML when documentElement doesn't yet exist, such as inside loading iframes - // https://bugs.jquery.com/ticket/4833 - return !rhtml.test( namespace || docElem && docElem.nodeName || "HTML" ); -}; - -/** - * Sets document-related variables once based on the current document - * @param {Element|Object} [doc] An element or document object to use to set the document - * @returns {Object} Returns the current document - */ -setDocument = Sizzle.setDocument = function( node ) { - var hasCompare, subWindow, - doc = node ? node.ownerDocument || node : preferredDoc; - - // Return early if doc is invalid or already selected - if ( doc === document || doc.nodeType !== 9 || !doc.documentElement ) { - return document; - } - - // Update global variables - document = doc; - docElem = document.documentElement; - documentIsHTML = !isXML( document ); - - // Support: IE 9-11, Edge - // Accessing iframe documents after unload throws "permission denied" errors (jQuery #13936) - if ( preferredDoc !== document && - (subWindow = document.defaultView) && subWindow.top !== subWindow ) { - - // Support: IE 11, Edge - if ( subWindow.addEventListener ) { - subWindow.addEventListener( "unload", unloadHandler, false ); - - // Support: IE 9 - 10 only - } else if ( subWindow.attachEvent ) { - subWindow.attachEvent( "onunload", unloadHandler ); - } - } - - /* Attributes - ---------------------------------------------------------------------- */ - - // Support: IE<8 - // Verify that getAttribute really returns attributes and not properties - // (excepting IE8 booleans) - support.attributes = assert(function( el ) { - el.className = "i"; - return !el.getAttribute("className"); - }); - - /* getElement(s)By* - ---------------------------------------------------------------------- */ - - // Check if getElementsByTagName("*") returns only elements - support.getElementsByTagName = assert(function( el ) { - el.appendChild( document.createComment("") ); - return !el.getElementsByTagName("*").length; - }); - - // Support: IE<9 - support.getElementsByClassName = rnative.test( document.getElementsByClassName ); - - // Support: IE<10 - // Check if getElementById returns elements by name - // The broken getElementById methods don't pick up programmatically-set names, - // so use a roundabout getElementsByName test - support.getById = assert(function( el ) { - docElem.appendChild( el ).id = expando; - return !document.getElementsByName || !document.getElementsByName( expando ).length; - }); - - // ID filter and find - if ( support.getById ) { - Expr.filter["ID"] = function( id ) { - var attrId = id.replace( runescape, funescape ); - return function( elem ) { - return elem.getAttribute("id") === attrId; - }; - }; - Expr.find["ID"] = function( id, context ) { - if ( typeof context.getElementById !== "undefined" && documentIsHTML ) { - var elem = context.getElementById( id ); - return elem ? [ elem ] : []; - } - }; - } else { - Expr.filter["ID"] = function( id ) { - var attrId = id.replace( runescape, funescape ); - return function( elem ) { - var node = typeof elem.getAttributeNode !== "undefined" && - elem.getAttributeNode("id"); - return node && node.value === attrId; - }; - }; - - // Support: IE 6 - 7 only - // getElementById is not reliable as a find shortcut - Expr.find["ID"] = function( id, context ) { - if ( typeof context.getElementById !== "undefined" && documentIsHTML ) { - var node, i, elems, - elem = context.getElementById( id ); - - if ( elem ) { - - // Verify the id attribute - node = elem.getAttributeNode("id"); - if ( node && node.value === id ) { - return [ elem ]; - } - - // Fall back on getElementsByName - elems = context.getElementsByName( id ); - i = 0; - while ( (elem = elems[i++]) ) { - node = elem.getAttributeNode("id"); - if ( node && node.value === id ) { - return [ elem ]; - } - } - } - - return []; - } - }; - } - - // Tag - Expr.find["TAG"] = support.getElementsByTagName ? - function( tag, context ) { - if ( typeof context.getElementsByTagName !== "undefined" ) { - return context.getElementsByTagName( tag ); - - // DocumentFragment nodes don't have gEBTN - } else if ( support.qsa ) { - return context.querySelectorAll( tag ); - } - } : - - function( tag, context ) { - var elem, - tmp = [], - i = 0, - // By happy coincidence, a (broken) gEBTN appears on DocumentFragment nodes too - results = context.getElementsByTagName( tag ); - - // Filter out possible comments - if ( tag === "*" ) { - while ( (elem = results[i++]) ) { - if ( elem.nodeType === 1 ) { - tmp.push( elem ); - } - } - - return tmp; - } - return results; - }; - - // Class - Expr.find["CLASS"] = support.getElementsByClassName && function( className, context ) { - if ( typeof context.getElementsByClassName !== "undefined" && documentIsHTML ) { - return context.getElementsByClassName( className ); - } - }; - - /* QSA/matchesSelector - ---------------------------------------------------------------------- */ - - // QSA and matchesSelector support - - // matchesSelector(:active) reports false when true (IE9/Opera 11.5) - rbuggyMatches = []; - - // qSa(:focus) reports false when true (Chrome 21) - // We allow this because of a bug in IE8/9 that throws an error - // whenever `document.activeElement` is accessed on an iframe - // So, we allow :focus to pass through QSA all the time to avoid the IE error - // See https://bugs.jquery.com/ticket/13378 - rbuggyQSA = []; - - if ( (support.qsa = rnative.test( document.querySelectorAll )) ) { - // Build QSA regex - // Regex strategy adopted from Diego Perini - assert(function( el ) { - // Select is set to empty string on purpose - // This is to test IE's treatment of not explicitly - // setting a boolean content attribute, - // since its presence should be enough - // https://bugs.jquery.com/ticket/12359 - docElem.appendChild( el ).innerHTML = "" + - ""; - - // Support: IE8, Opera 11-12.16 - // Nothing should be selected when empty strings follow ^= or $= or *= - // The test attribute must be unknown in Opera but "safe" for WinRT - // https://msdn.microsoft.com/en-us/library/ie/hh465388.aspx#attribute_section - if ( el.querySelectorAll("[msallowcapture^='']").length ) { - rbuggyQSA.push( "[*^$]=" + whitespace + "*(?:''|\"\")" ); - } - - // Support: IE8 - // Boolean attributes and "value" are not treated correctly - if ( !el.querySelectorAll("[selected]").length ) { - rbuggyQSA.push( "\\[" + whitespace + "*(?:value|" + booleans + ")" ); - } - - // Support: Chrome<29, Android<4.4, Safari<7.0+, iOS<7.0+, PhantomJS<1.9.8+ - if ( !el.querySelectorAll( "[id~=" + expando + "-]" ).length ) { - rbuggyQSA.push("~="); - } - - // Webkit/Opera - :checked should return selected option elements - // http://www.w3.org/TR/2011/REC-css3-selectors-20110929/#checked - // IE8 throws error here and will not see later tests - if ( !el.querySelectorAll(":checked").length ) { - rbuggyQSA.push(":checked"); - } - - // Support: Safari 8+, iOS 8+ - // https://bugs.webkit.org/show_bug.cgi?id=136851 - // In-page `selector#id sibling-combinator selector` fails - if ( !el.querySelectorAll( "a#" + expando + "+*" ).length ) { - rbuggyQSA.push(".#.+[+~]"); - } - }); - - assert(function( el ) { - el.innerHTML = "" + - ""; - - // Support: Windows 8 Native Apps - // The type and name attributes are restricted during .innerHTML assignment - var input = document.createElement("input"); - input.setAttribute( "type", "hidden" ); - el.appendChild( input ).setAttribute( "name", "D" ); - - // Support: IE8 - // Enforce case-sensitivity of name attribute - if ( el.querySelectorAll("[name=d]").length ) { - rbuggyQSA.push( "name" + whitespace + "*[*^$|!~]?=" ); - } - - // FF 3.5 - :enabled/:disabled and hidden elements (hidden elements are still enabled) - // IE8 throws error here and will not see later tests - if ( el.querySelectorAll(":enabled").length !== 2 ) { - rbuggyQSA.push( ":enabled", ":disabled" ); - } - - // Support: IE9-11+ - // IE's :disabled selector does not pick up the children of disabled fieldsets - docElem.appendChild( el ).disabled = true; - if ( el.querySelectorAll(":disabled").length !== 2 ) { - rbuggyQSA.push( ":enabled", ":disabled" ); - } - - // Opera 10-11 does not throw on post-comma invalid pseudos - el.querySelectorAll("*,:x"); - rbuggyQSA.push(",.*:"); - }); - } - - if ( (support.matchesSelector = rnative.test( (matches = docElem.matches || - docElem.webkitMatchesSelector || - docElem.mozMatchesSelector || - docElem.oMatchesSelector || - docElem.msMatchesSelector) )) ) { - - assert(function( el ) { - // Check to see if it's possible to do matchesSelector - // on a disconnected node (IE 9) - support.disconnectedMatch = matches.call( el, "*" ); - - // This should fail with an exception - // Gecko does not error, returns false instead - matches.call( el, "[s!='']:x" ); - rbuggyMatches.push( "!=", pseudos ); - }); - } - - rbuggyQSA = rbuggyQSA.length && new RegExp( rbuggyQSA.join("|") ); - rbuggyMatches = rbuggyMatches.length && new RegExp( rbuggyMatches.join("|") ); - - /* Contains - ---------------------------------------------------------------------- */ - hasCompare = rnative.test( docElem.compareDocumentPosition ); - - // Element contains another - // Purposefully self-exclusive - // As in, an element does not contain itself - contains = hasCompare || rnative.test( docElem.contains ) ? - function( a, b ) { - var adown = a.nodeType === 9 ? a.documentElement : a, - bup = b && b.parentNode; - return a === bup || !!( bup && bup.nodeType === 1 && ( - adown.contains ? - adown.contains( bup ) : - a.compareDocumentPosition && a.compareDocumentPosition( bup ) & 16 - )); - } : - function( a, b ) { - if ( b ) { - while ( (b = b.parentNode) ) { - if ( b === a ) { - return true; - } - } - } - return false; - }; - - /* Sorting - ---------------------------------------------------------------------- */ - - // Document order sorting - sortOrder = hasCompare ? - function( a, b ) { - - // Flag for duplicate removal - if ( a === b ) { - hasDuplicate = true; - return 0; - } - - // Sort on method existence if only one input has compareDocumentPosition - var compare = !a.compareDocumentPosition - !b.compareDocumentPosition; - if ( compare ) { - return compare; - } - - // Calculate position if both inputs belong to the same document - compare = ( a.ownerDocument || a ) === ( b.ownerDocument || b ) ? - a.compareDocumentPosition( b ) : - - // Otherwise we know they are disconnected - 1; - - // Disconnected nodes - if ( compare & 1 || - (!support.sortDetached && b.compareDocumentPosition( a ) === compare) ) { - - // Choose the first element that is related to our preferred document - if ( a === document || a.ownerDocument === preferredDoc && contains(preferredDoc, a) ) { - return -1; - } - if ( b === document || b.ownerDocument === preferredDoc && contains(preferredDoc, b) ) { - return 1; - } - - // Maintain original order - return sortInput ? - ( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) : - 0; - } - - return compare & 4 ? -1 : 1; - } : - function( a, b ) { - // Exit early if the nodes are identical - if ( a === b ) { - hasDuplicate = true; - return 0; - } - - var cur, - i = 0, - aup = a.parentNode, - bup = b.parentNode, - ap = [ a ], - bp = [ b ]; - - // Parentless nodes are either documents or disconnected - if ( !aup || !bup ) { - return a === document ? -1 : - b === document ? 1 : - aup ? -1 : - bup ? 1 : - sortInput ? - ( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) : - 0; - - // If the nodes are siblings, we can do a quick check - } else if ( aup === bup ) { - return siblingCheck( a, b ); - } - - // Otherwise we need full lists of their ancestors for comparison - cur = a; - while ( (cur = cur.parentNode) ) { - ap.unshift( cur ); - } - cur = b; - while ( (cur = cur.parentNode) ) { - bp.unshift( cur ); - } - - // Walk down the tree looking for a discrepancy - while ( ap[i] === bp[i] ) { - i++; - } - - return i ? - // Do a sibling check if the nodes have a common ancestor - siblingCheck( ap[i], bp[i] ) : - - // Otherwise nodes in our document sort first - ap[i] === preferredDoc ? -1 : - bp[i] === preferredDoc ? 1 : - 0; - }; - - return document; -}; - -Sizzle.matches = function( expr, elements ) { - return Sizzle( expr, null, null, elements ); -}; - -Sizzle.matchesSelector = function( elem, expr ) { - // Set document vars if needed - if ( ( elem.ownerDocument || elem ) !== document ) { - setDocument( elem ); - } - - if ( support.matchesSelector && documentIsHTML && - !nonnativeSelectorCache[ expr + " " ] && - ( !rbuggyMatches || !rbuggyMatches.test( expr ) ) && - ( !rbuggyQSA || !rbuggyQSA.test( expr ) ) ) { - - try { - var ret = matches.call( elem, expr ); - - // IE 9's matchesSelector returns false on disconnected nodes - if ( ret || support.disconnectedMatch || - // As well, disconnected nodes are said to be in a document - // fragment in IE 9 - elem.document && elem.document.nodeType !== 11 ) { - return ret; - } - } catch (e) { - nonnativeSelectorCache( expr, true ); - } - } - - return Sizzle( expr, document, null, [ elem ] ).length > 0; -}; - -Sizzle.contains = function( context, elem ) { - // Set document vars if needed - if ( ( context.ownerDocument || context ) !== document ) { - setDocument( context ); - } - return contains( context, elem ); -}; - -Sizzle.attr = function( elem, name ) { - // Set document vars if needed - if ( ( elem.ownerDocument || elem ) !== document ) { - setDocument( elem ); - } - - var fn = Expr.attrHandle[ name.toLowerCase() ], - // Don't get fooled by Object.prototype properties (jQuery #13807) - val = fn && hasOwn.call( Expr.attrHandle, name.toLowerCase() ) ? - fn( elem, name, !documentIsHTML ) : - undefined; - - return val !== undefined ? - val : - support.attributes || !documentIsHTML ? - elem.getAttribute( name ) : - (val = elem.getAttributeNode(name)) && val.specified ? - val.value : - null; -}; - -Sizzle.escape = function( sel ) { - return (sel + "").replace( rcssescape, fcssescape ); -}; - -Sizzle.error = function( msg ) { - throw new Error( "Syntax error, unrecognized expression: " + msg ); -}; - -/** - * Document sorting and removing duplicates - * @param {ArrayLike} results - */ -Sizzle.uniqueSort = function( results ) { - var elem, - duplicates = [], - j = 0, - i = 0; - - // Unless we *know* we can detect duplicates, assume their presence - hasDuplicate = !support.detectDuplicates; - sortInput = !support.sortStable && results.slice( 0 ); - results.sort( sortOrder ); - - if ( hasDuplicate ) { - while ( (elem = results[i++]) ) { - if ( elem === results[ i ] ) { - j = duplicates.push( i ); - } - } - while ( j-- ) { - results.splice( duplicates[ j ], 1 ); - } - } - - // Clear input after sorting to release objects - // See https://github.com/jquery/sizzle/pull/225 - sortInput = null; - - return results; -}; - -/** - * Utility function for retrieving the text value of an array of DOM nodes - * @param {Array|Element} elem - */ -getText = Sizzle.getText = function( elem ) { - var node, - ret = "", - i = 0, - nodeType = elem.nodeType; - - if ( !nodeType ) { - // If no nodeType, this is expected to be an array - while ( (node = elem[i++]) ) { - // Do not traverse comment nodes - ret += getText( node ); - } - } else if ( nodeType === 1 || nodeType === 9 || nodeType === 11 ) { - // Use textContent for elements - // innerText usage removed for consistency of new lines (jQuery #11153) - if ( typeof elem.textContent === "string" ) { - return elem.textContent; - } else { - // Traverse its children - for ( elem = elem.firstChild; elem; elem = elem.nextSibling ) { - ret += getText( elem ); - } - } - } else if ( nodeType === 3 || nodeType === 4 ) { - return elem.nodeValue; - } - // Do not include comment or processing instruction nodes - - return ret; -}; - -Expr = Sizzle.selectors = { - - // Can be adjusted by the user - cacheLength: 50, - - createPseudo: markFunction, - - match: matchExpr, - - attrHandle: {}, - - find: {}, - - relative: { - ">": { dir: "parentNode", first: true }, - " ": { dir: "parentNode" }, - "+": { dir: "previousSibling", first: true }, - "~": { dir: "previousSibling" } - }, - - preFilter: { - "ATTR": function( match ) { - match[1] = match[1].replace( runescape, funescape ); - - // Move the given value to match[3] whether quoted or unquoted - match[3] = ( match[3] || match[4] || match[5] || "" ).replace( runescape, funescape ); - - if ( match[2] === "~=" ) { - match[3] = " " + match[3] + " "; - } - - return match.slice( 0, 4 ); - }, - - "CHILD": function( match ) { - /* matches from matchExpr["CHILD"] - 1 type (only|nth|...) - 2 what (child|of-type) - 3 argument (even|odd|\d*|\d*n([+-]\d+)?|...) - 4 xn-component of xn+y argument ([+-]?\d*n|) - 5 sign of xn-component - 6 x of xn-component - 7 sign of y-component - 8 y of y-component - */ - match[1] = match[1].toLowerCase(); - - if ( match[1].slice( 0, 3 ) === "nth" ) { - // nth-* requires argument - if ( !match[3] ) { - Sizzle.error( match[0] ); - } - - // numeric x and y parameters for Expr.filter.CHILD - // remember that false/true cast respectively to 0/1 - match[4] = +( match[4] ? match[5] + (match[6] || 1) : 2 * ( match[3] === "even" || match[3] === "odd" ) ); - match[5] = +( ( match[7] + match[8] ) || match[3] === "odd" ); - - // other types prohibit arguments - } else if ( match[3] ) { - Sizzle.error( match[0] ); - } - - return match; - }, - - "PSEUDO": function( match ) { - var excess, - unquoted = !match[6] && match[2]; - - if ( matchExpr["CHILD"].test( match[0] ) ) { - return null; - } - - // Accept quoted arguments as-is - if ( match[3] ) { - match[2] = match[4] || match[5] || ""; - - // Strip excess characters from unquoted arguments - } else if ( unquoted && rpseudo.test( unquoted ) && - // Get excess from tokenize (recursively) - (excess = tokenize( unquoted, true )) && - // advance to the next closing parenthesis - (excess = unquoted.indexOf( ")", unquoted.length - excess ) - unquoted.length) ) { - - // excess is a negative index - match[0] = match[0].slice( 0, excess ); - match[2] = unquoted.slice( 0, excess ); - } - - // Return only captures needed by the pseudo filter method (type and argument) - return match.slice( 0, 3 ); - } - }, - - filter: { - - "TAG": function( nodeNameSelector ) { - var nodeName = nodeNameSelector.replace( runescape, funescape ).toLowerCase(); - return nodeNameSelector === "*" ? - function() { return true; } : - function( elem ) { - return elem.nodeName && elem.nodeName.toLowerCase() === nodeName; - }; - }, - - "CLASS": function( className ) { - var pattern = classCache[ className + " " ]; - - return pattern || - (pattern = new RegExp( "(^|" + whitespace + ")" + className + "(" + whitespace + "|$)" )) && - classCache( className, function( elem ) { - return pattern.test( typeof elem.className === "string" && elem.className || typeof elem.getAttribute !== "undefined" && elem.getAttribute("class") || "" ); - }); - }, - - "ATTR": function( name, operator, check ) { - return function( elem ) { - var result = Sizzle.attr( elem, name ); - - if ( result == null ) { - return operator === "!="; - } - if ( !operator ) { - return true; - } - - result += ""; - - return operator === "=" ? result === check : - operator === "!=" ? result !== check : - operator === "^=" ? check && result.indexOf( check ) === 0 : - operator === "*=" ? check && result.indexOf( check ) > -1 : - operator === "$=" ? check && result.slice( -check.length ) === check : - operator === "~=" ? ( " " + result.replace( rwhitespace, " " ) + " " ).indexOf( check ) > -1 : - operator === "|=" ? result === check || result.slice( 0, check.length + 1 ) === check + "-" : - false; - }; - }, - - "CHILD": function( type, what, argument, first, last ) { - var simple = type.slice( 0, 3 ) !== "nth", - forward = type.slice( -4 ) !== "last", - ofType = what === "of-type"; - - return first === 1 && last === 0 ? - - // Shortcut for :nth-*(n) - function( elem ) { - return !!elem.parentNode; - } : - - function( elem, context, xml ) { - var cache, uniqueCache, outerCache, node, nodeIndex, start, - dir = simple !== forward ? "nextSibling" : "previousSibling", - parent = elem.parentNode, - name = ofType && elem.nodeName.toLowerCase(), - useCache = !xml && !ofType, - diff = false; - - if ( parent ) { - - // :(first|last|only)-(child|of-type) - if ( simple ) { - while ( dir ) { - node = elem; - while ( (node = node[ dir ]) ) { - if ( ofType ? - node.nodeName.toLowerCase() === name : - node.nodeType === 1 ) { - - return false; - } - } - // Reverse direction for :only-* (if we haven't yet done so) - start = dir = type === "only" && !start && "nextSibling"; - } - return true; - } - - start = [ forward ? parent.firstChild : parent.lastChild ]; - - // non-xml :nth-child(...) stores cache data on `parent` - if ( forward && useCache ) { - - // Seek `elem` from a previously-cached index - - // ...in a gzip-friendly way - node = parent; - outerCache = node[ expando ] || (node[ expando ] = {}); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ node.uniqueID ] || - (outerCache[ node.uniqueID ] = {}); - - cache = uniqueCache[ type ] || []; - nodeIndex = cache[ 0 ] === dirruns && cache[ 1 ]; - diff = nodeIndex && cache[ 2 ]; - node = nodeIndex && parent.childNodes[ nodeIndex ]; - - while ( (node = ++nodeIndex && node && node[ dir ] || - - // Fallback to seeking `elem` from the start - (diff = nodeIndex = 0) || start.pop()) ) { - - // When found, cache indexes on `parent` and break - if ( node.nodeType === 1 && ++diff && node === elem ) { - uniqueCache[ type ] = [ dirruns, nodeIndex, diff ]; - break; - } - } - - } else { - // Use previously-cached element index if available - if ( useCache ) { - // ...in a gzip-friendly way - node = elem; - outerCache = node[ expando ] || (node[ expando ] = {}); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ node.uniqueID ] || - (outerCache[ node.uniqueID ] = {}); - - cache = uniqueCache[ type ] || []; - nodeIndex = cache[ 0 ] === dirruns && cache[ 1 ]; - diff = nodeIndex; - } - - // xml :nth-child(...) - // or :nth-last-child(...) or :nth(-last)?-of-type(...) - if ( diff === false ) { - // Use the same loop as above to seek `elem` from the start - while ( (node = ++nodeIndex && node && node[ dir ] || - (diff = nodeIndex = 0) || start.pop()) ) { - - if ( ( ofType ? - node.nodeName.toLowerCase() === name : - node.nodeType === 1 ) && - ++diff ) { - - // Cache the index of each encountered element - if ( useCache ) { - outerCache = node[ expando ] || (node[ expando ] = {}); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ node.uniqueID ] || - (outerCache[ node.uniqueID ] = {}); - - uniqueCache[ type ] = [ dirruns, diff ]; - } - - if ( node === elem ) { - break; - } - } - } - } - } - - // Incorporate the offset, then check against cycle size - diff -= last; - return diff === first || ( diff % first === 0 && diff / first >= 0 ); - } - }; - }, - - "PSEUDO": function( pseudo, argument ) { - // pseudo-class names are case-insensitive - // http://www.w3.org/TR/selectors/#pseudo-classes - // Prioritize by case sensitivity in case custom pseudos are added with uppercase letters - // Remember that setFilters inherits from pseudos - var args, - fn = Expr.pseudos[ pseudo ] || Expr.setFilters[ pseudo.toLowerCase() ] || - Sizzle.error( "unsupported pseudo: " + pseudo ); - - // The user may use createPseudo to indicate that - // arguments are needed to create the filter function - // just as Sizzle does - if ( fn[ expando ] ) { - return fn( argument ); - } - - // But maintain support for old signatures - if ( fn.length > 1 ) { - args = [ pseudo, pseudo, "", argument ]; - return Expr.setFilters.hasOwnProperty( pseudo.toLowerCase() ) ? - markFunction(function( seed, matches ) { - var idx, - matched = fn( seed, argument ), - i = matched.length; - while ( i-- ) { - idx = indexOf( seed, matched[i] ); - seed[ idx ] = !( matches[ idx ] = matched[i] ); - } - }) : - function( elem ) { - return fn( elem, 0, args ); - }; - } - - return fn; - } - }, - - pseudos: { - // Potentially complex pseudos - "not": markFunction(function( selector ) { - // Trim the selector passed to compile - // to avoid treating leading and trailing - // spaces as combinators - var input = [], - results = [], - matcher = compile( selector.replace( rtrim, "$1" ) ); - - return matcher[ expando ] ? - markFunction(function( seed, matches, context, xml ) { - var elem, - unmatched = matcher( seed, null, xml, [] ), - i = seed.length; - - // Match elements unmatched by `matcher` - while ( i-- ) { - if ( (elem = unmatched[i]) ) { - seed[i] = !(matches[i] = elem); - } - } - }) : - function( elem, context, xml ) { - input[0] = elem; - matcher( input, null, xml, results ); - // Don't keep the element (issue #299) - input[0] = null; - return !results.pop(); - }; - }), - - "has": markFunction(function( selector ) { - return function( elem ) { - return Sizzle( selector, elem ).length > 0; - }; - }), - - "contains": markFunction(function( text ) { - text = text.replace( runescape, funescape ); - return function( elem ) { - return ( elem.textContent || getText( elem ) ).indexOf( text ) > -1; - }; - }), - - // "Whether an element is represented by a :lang() selector - // is based solely on the element's language value - // being equal to the identifier C, - // or beginning with the identifier C immediately followed by "-". - // The matching of C against the element's language value is performed case-insensitively. - // The identifier C does not have to be a valid language name." - // http://www.w3.org/TR/selectors/#lang-pseudo - "lang": markFunction( function( lang ) { - // lang value must be a valid identifier - if ( !ridentifier.test(lang || "") ) { - Sizzle.error( "unsupported lang: " + lang ); - } - lang = lang.replace( runescape, funescape ).toLowerCase(); - return function( elem ) { - var elemLang; - do { - if ( (elemLang = documentIsHTML ? - elem.lang : - elem.getAttribute("xml:lang") || elem.getAttribute("lang")) ) { - - elemLang = elemLang.toLowerCase(); - return elemLang === lang || elemLang.indexOf( lang + "-" ) === 0; - } - } while ( (elem = elem.parentNode) && elem.nodeType === 1 ); - return false; - }; - }), - - // Miscellaneous - "target": function( elem ) { - var hash = window.location && window.location.hash; - return hash && hash.slice( 1 ) === elem.id; - }, - - "root": function( elem ) { - return elem === docElem; - }, - - "focus": function( elem ) { - return elem === document.activeElement && (!document.hasFocus || document.hasFocus()) && !!(elem.type || elem.href || ~elem.tabIndex); - }, - - // Boolean properties - "enabled": createDisabledPseudo( false ), - "disabled": createDisabledPseudo( true ), - - "checked": function( elem ) { - // In CSS3, :checked should return both checked and selected elements - // http://www.w3.org/TR/2011/REC-css3-selectors-20110929/#checked - var nodeName = elem.nodeName.toLowerCase(); - return (nodeName === "input" && !!elem.checked) || (nodeName === "option" && !!elem.selected); - }, - - "selected": function( elem ) { - // Accessing this property makes selected-by-default - // options in Safari work properly - if ( elem.parentNode ) { - elem.parentNode.selectedIndex; - } - - return elem.selected === true; - }, - - // Contents - "empty": function( elem ) { - // http://www.w3.org/TR/selectors/#empty-pseudo - // :empty is negated by element (1) or content nodes (text: 3; cdata: 4; entity ref: 5), - // but not by others (comment: 8; processing instruction: 7; etc.) - // nodeType < 6 works because attributes (2) do not appear as children - for ( elem = elem.firstChild; elem; elem = elem.nextSibling ) { - if ( elem.nodeType < 6 ) { - return false; - } - } - return true; - }, - - "parent": function( elem ) { - return !Expr.pseudos["empty"]( elem ); - }, - - // Element/input types - "header": function( elem ) { - return rheader.test( elem.nodeName ); - }, - - "input": function( elem ) { - return rinputs.test( elem.nodeName ); - }, - - "button": function( elem ) { - var name = elem.nodeName.toLowerCase(); - return name === "input" && elem.type === "button" || name === "button"; - }, - - "text": function( elem ) { - var attr; - return elem.nodeName.toLowerCase() === "input" && - elem.type === "text" && - - // Support: IE<8 - // New HTML5 attribute values (e.g., "search") appear with elem.type === "text" - ( (attr = elem.getAttribute("type")) == null || attr.toLowerCase() === "text" ); - }, - - // Position-in-collection - "first": createPositionalPseudo(function() { - return [ 0 ]; - }), - - "last": createPositionalPseudo(function( matchIndexes, length ) { - return [ length - 1 ]; - }), - - "eq": createPositionalPseudo(function( matchIndexes, length, argument ) { - return [ argument < 0 ? argument + length : argument ]; - }), - - "even": createPositionalPseudo(function( matchIndexes, length ) { - var i = 0; - for ( ; i < length; i += 2 ) { - matchIndexes.push( i ); - } - return matchIndexes; - }), - - "odd": createPositionalPseudo(function( matchIndexes, length ) { - var i = 1; - for ( ; i < length; i += 2 ) { - matchIndexes.push( i ); - } - return matchIndexes; - }), - - "lt": createPositionalPseudo(function( matchIndexes, length, argument ) { - var i = argument < 0 ? - argument + length : - argument > length ? - length : - argument; - for ( ; --i >= 0; ) { - matchIndexes.push( i ); - } - return matchIndexes; - }), - - "gt": createPositionalPseudo(function( matchIndexes, length, argument ) { - var i = argument < 0 ? argument + length : argument; - for ( ; ++i < length; ) { - matchIndexes.push( i ); - } - return matchIndexes; - }) - } -}; - -Expr.pseudos["nth"] = Expr.pseudos["eq"]; - -// Add button/input type pseudos -for ( i in { radio: true, checkbox: true, file: true, password: true, image: true } ) { - Expr.pseudos[ i ] = createInputPseudo( i ); -} -for ( i in { submit: true, reset: true } ) { - Expr.pseudos[ i ] = createButtonPseudo( i ); -} - -// Easy API for creating new setFilters -function setFilters() {} -setFilters.prototype = Expr.filters = Expr.pseudos; -Expr.setFilters = new setFilters(); - -tokenize = Sizzle.tokenize = function( selector, parseOnly ) { - var matched, match, tokens, type, - soFar, groups, preFilters, - cached = tokenCache[ selector + " " ]; - - if ( cached ) { - return parseOnly ? 0 : cached.slice( 0 ); - } - - soFar = selector; - groups = []; - preFilters = Expr.preFilter; - - while ( soFar ) { - - // Comma and first run - if ( !matched || (match = rcomma.exec( soFar )) ) { - if ( match ) { - // Don't consume trailing commas as valid - soFar = soFar.slice( match[0].length ) || soFar; - } - groups.push( (tokens = []) ); - } - - matched = false; - - // Combinators - if ( (match = rcombinators.exec( soFar )) ) { - matched = match.shift(); - tokens.push({ - value: matched, - // Cast descendant combinators to space - type: match[0].replace( rtrim, " " ) - }); - soFar = soFar.slice( matched.length ); - } - - // Filters - for ( type in Expr.filter ) { - if ( (match = matchExpr[ type ].exec( soFar )) && (!preFilters[ type ] || - (match = preFilters[ type ]( match ))) ) { - matched = match.shift(); - tokens.push({ - value: matched, - type: type, - matches: match - }); - soFar = soFar.slice( matched.length ); - } - } - - if ( !matched ) { - break; - } - } - - // Return the length of the invalid excess - // if we're just parsing - // Otherwise, throw an error or return tokens - return parseOnly ? - soFar.length : - soFar ? - Sizzle.error( selector ) : - // Cache the tokens - tokenCache( selector, groups ).slice( 0 ); -}; - -function toSelector( tokens ) { - var i = 0, - len = tokens.length, - selector = ""; - for ( ; i < len; i++ ) { - selector += tokens[i].value; - } - return selector; -} - -function addCombinator( matcher, combinator, base ) { - var dir = combinator.dir, - skip = combinator.next, - key = skip || dir, - checkNonElements = base && key === "parentNode", - doneName = done++; - - return combinator.first ? - // Check against closest ancestor/preceding element - function( elem, context, xml ) { - while ( (elem = elem[ dir ]) ) { - if ( elem.nodeType === 1 || checkNonElements ) { - return matcher( elem, context, xml ); - } - } - return false; - } : - - // Check against all ancestor/preceding elements - function( elem, context, xml ) { - var oldCache, uniqueCache, outerCache, - newCache = [ dirruns, doneName ]; - - // We can't set arbitrary data on XML nodes, so they don't benefit from combinator caching - if ( xml ) { - while ( (elem = elem[ dir ]) ) { - if ( elem.nodeType === 1 || checkNonElements ) { - if ( matcher( elem, context, xml ) ) { - return true; - } - } - } - } else { - while ( (elem = elem[ dir ]) ) { - if ( elem.nodeType === 1 || checkNonElements ) { - outerCache = elem[ expando ] || (elem[ expando ] = {}); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ elem.uniqueID ] || (outerCache[ elem.uniqueID ] = {}); - - if ( skip && skip === elem.nodeName.toLowerCase() ) { - elem = elem[ dir ] || elem; - } else if ( (oldCache = uniqueCache[ key ]) && - oldCache[ 0 ] === dirruns && oldCache[ 1 ] === doneName ) { - - // Assign to newCache so results back-propagate to previous elements - return (newCache[ 2 ] = oldCache[ 2 ]); - } else { - // Reuse newcache so results back-propagate to previous elements - uniqueCache[ key ] = newCache; - - // A match means we're done; a fail means we have to keep checking - if ( (newCache[ 2 ] = matcher( elem, context, xml )) ) { - return true; - } - } - } - } - } - return false; - }; -} - -function elementMatcher( matchers ) { - return matchers.length > 1 ? - function( elem, context, xml ) { - var i = matchers.length; - while ( i-- ) { - if ( !matchers[i]( elem, context, xml ) ) { - return false; - } - } - return true; - } : - matchers[0]; -} - -function multipleContexts( selector, contexts, results ) { - var i = 0, - len = contexts.length; - for ( ; i < len; i++ ) { - Sizzle( selector, contexts[i], results ); - } - return results; -} - -function condense( unmatched, map, filter, context, xml ) { - var elem, - newUnmatched = [], - i = 0, - len = unmatched.length, - mapped = map != null; - - for ( ; i < len; i++ ) { - if ( (elem = unmatched[i]) ) { - if ( !filter || filter( elem, context, xml ) ) { - newUnmatched.push( elem ); - if ( mapped ) { - map.push( i ); - } - } - } - } - - return newUnmatched; -} - -function setMatcher( preFilter, selector, matcher, postFilter, postFinder, postSelector ) { - if ( postFilter && !postFilter[ expando ] ) { - postFilter = setMatcher( postFilter ); - } - if ( postFinder && !postFinder[ expando ] ) { - postFinder = setMatcher( postFinder, postSelector ); - } - return markFunction(function( seed, results, context, xml ) { - var temp, i, elem, - preMap = [], - postMap = [], - preexisting = results.length, - - // Get initial elements from seed or context - elems = seed || multipleContexts( selector || "*", context.nodeType ? [ context ] : context, [] ), - - // Prefilter to get matcher input, preserving a map for seed-results synchronization - matcherIn = preFilter && ( seed || !selector ) ? - condense( elems, preMap, preFilter, context, xml ) : - elems, - - matcherOut = matcher ? - // If we have a postFinder, or filtered seed, or non-seed postFilter or preexisting results, - postFinder || ( seed ? preFilter : preexisting || postFilter ) ? - - // ...intermediate processing is necessary - [] : - - // ...otherwise use results directly - results : - matcherIn; - - // Find primary matches - if ( matcher ) { - matcher( matcherIn, matcherOut, context, xml ); - } - - // Apply postFilter - if ( postFilter ) { - temp = condense( matcherOut, postMap ); - postFilter( temp, [], context, xml ); - - // Un-match failing elements by moving them back to matcherIn - i = temp.length; - while ( i-- ) { - if ( (elem = temp[i]) ) { - matcherOut[ postMap[i] ] = !(matcherIn[ postMap[i] ] = elem); - } - } - } - - if ( seed ) { - if ( postFinder || preFilter ) { - if ( postFinder ) { - // Get the final matcherOut by condensing this intermediate into postFinder contexts - temp = []; - i = matcherOut.length; - while ( i-- ) { - if ( (elem = matcherOut[i]) ) { - // Restore matcherIn since elem is not yet a final match - temp.push( (matcherIn[i] = elem) ); - } - } - postFinder( null, (matcherOut = []), temp, xml ); - } - - // Move matched elements from seed to results to keep them synchronized - i = matcherOut.length; - while ( i-- ) { - if ( (elem = matcherOut[i]) && - (temp = postFinder ? indexOf( seed, elem ) : preMap[i]) > -1 ) { - - seed[temp] = !(results[temp] = elem); - } - } - } - - // Add elements to results, through postFinder if defined - } else { - matcherOut = condense( - matcherOut === results ? - matcherOut.splice( preexisting, matcherOut.length ) : - matcherOut - ); - if ( postFinder ) { - postFinder( null, results, matcherOut, xml ); - } else { - push.apply( results, matcherOut ); - } - } - }); -} - -function matcherFromTokens( tokens ) { - var checkContext, matcher, j, - len = tokens.length, - leadingRelative = Expr.relative[ tokens[0].type ], - implicitRelative = leadingRelative || Expr.relative[" "], - i = leadingRelative ? 1 : 0, - - // The foundational matcher ensures that elements are reachable from top-level context(s) - matchContext = addCombinator( function( elem ) { - return elem === checkContext; - }, implicitRelative, true ), - matchAnyContext = addCombinator( function( elem ) { - return indexOf( checkContext, elem ) > -1; - }, implicitRelative, true ), - matchers = [ function( elem, context, xml ) { - var ret = ( !leadingRelative && ( xml || context !== outermostContext ) ) || ( - (checkContext = context).nodeType ? - matchContext( elem, context, xml ) : - matchAnyContext( elem, context, xml ) ); - // Avoid hanging onto element (issue #299) - checkContext = null; - return ret; - } ]; - - for ( ; i < len; i++ ) { - if ( (matcher = Expr.relative[ tokens[i].type ]) ) { - matchers = [ addCombinator(elementMatcher( matchers ), matcher) ]; - } else { - matcher = Expr.filter[ tokens[i].type ].apply( null, tokens[i].matches ); - - // Return special upon seeing a positional matcher - if ( matcher[ expando ] ) { - // Find the next relative operator (if any) for proper handling - j = ++i; - for ( ; j < len; j++ ) { - if ( Expr.relative[ tokens[j].type ] ) { - break; - } - } - return setMatcher( - i > 1 && elementMatcher( matchers ), - i > 1 && toSelector( - // If the preceding token was a descendant combinator, insert an implicit any-element `*` - tokens.slice( 0, i - 1 ).concat({ value: tokens[ i - 2 ].type === " " ? "*" : "" }) - ).replace( rtrim, "$1" ), - matcher, - i < j && matcherFromTokens( tokens.slice( i, j ) ), - j < len && matcherFromTokens( (tokens = tokens.slice( j )) ), - j < len && toSelector( tokens ) - ); - } - matchers.push( matcher ); - } - } - - return elementMatcher( matchers ); -} - -function matcherFromGroupMatchers( elementMatchers, setMatchers ) { - var bySet = setMatchers.length > 0, - byElement = elementMatchers.length > 0, - superMatcher = function( seed, context, xml, results, outermost ) { - var elem, j, matcher, - matchedCount = 0, - i = "0", - unmatched = seed && [], - setMatched = [], - contextBackup = outermostContext, - // We must always have either seed elements or outermost context - elems = seed || byElement && Expr.find["TAG"]( "*", outermost ), - // Use integer dirruns iff this is the outermost matcher - dirrunsUnique = (dirruns += contextBackup == null ? 1 : Math.random() || 0.1), - len = elems.length; - - if ( outermost ) { - outermostContext = context === document || context || outermost; - } - - // Add elements passing elementMatchers directly to results - // Support: IE<9, Safari - // Tolerate NodeList properties (IE: "length"; Safari: ) matching elements by id - for ( ; i !== len && (elem = elems[i]) != null; i++ ) { - if ( byElement && elem ) { - j = 0; - if ( !context && elem.ownerDocument !== document ) { - setDocument( elem ); - xml = !documentIsHTML; - } - while ( (matcher = elementMatchers[j++]) ) { - if ( matcher( elem, context || document, xml) ) { - results.push( elem ); - break; - } - } - if ( outermost ) { - dirruns = dirrunsUnique; - } - } - - // Track unmatched elements for set filters - if ( bySet ) { - // They will have gone through all possible matchers - if ( (elem = !matcher && elem) ) { - matchedCount--; - } - - // Lengthen the array for every element, matched or not - if ( seed ) { - unmatched.push( elem ); - } - } - } - - // `i` is now the count of elements visited above, and adding it to `matchedCount` - // makes the latter nonnegative. - matchedCount += i; - - // Apply set filters to unmatched elements - // NOTE: This can be skipped if there are no unmatched elements (i.e., `matchedCount` - // equals `i`), unless we didn't visit _any_ elements in the above loop because we have - // no element matchers and no seed. - // Incrementing an initially-string "0" `i` allows `i` to remain a string only in that - // case, which will result in a "00" `matchedCount` that differs from `i` but is also - // numerically zero. - if ( bySet && i !== matchedCount ) { - j = 0; - while ( (matcher = setMatchers[j++]) ) { - matcher( unmatched, setMatched, context, xml ); - } - - if ( seed ) { - // Reintegrate element matches to eliminate the need for sorting - if ( matchedCount > 0 ) { - while ( i-- ) { - if ( !(unmatched[i] || setMatched[i]) ) { - setMatched[i] = pop.call( results ); - } - } - } - - // Discard index placeholder values to get only actual matches - setMatched = condense( setMatched ); - } - - // Add matches to results - push.apply( results, setMatched ); - - // Seedless set matches succeeding multiple successful matchers stipulate sorting - if ( outermost && !seed && setMatched.length > 0 && - ( matchedCount + setMatchers.length ) > 1 ) { - - Sizzle.uniqueSort( results ); - } - } - - // Override manipulation of globals by nested matchers - if ( outermost ) { - dirruns = dirrunsUnique; - outermostContext = contextBackup; - } - - return unmatched; - }; - - return bySet ? - markFunction( superMatcher ) : - superMatcher; -} - -compile = Sizzle.compile = function( selector, match /* Internal Use Only */ ) { - var i, - setMatchers = [], - elementMatchers = [], - cached = compilerCache[ selector + " " ]; - - if ( !cached ) { - // Generate a function of recursive functions that can be used to check each element - if ( !match ) { - match = tokenize( selector ); - } - i = match.length; - while ( i-- ) { - cached = matcherFromTokens( match[i] ); - if ( cached[ expando ] ) { - setMatchers.push( cached ); - } else { - elementMatchers.push( cached ); - } - } - - // Cache the compiled function - cached = compilerCache( selector, matcherFromGroupMatchers( elementMatchers, setMatchers ) ); - - // Save selector and tokenization - cached.selector = selector; - } - return cached; -}; - -/** - * A low-level selection function that works with Sizzle's compiled - * selector functions - * @param {String|Function} selector A selector or a pre-compiled - * selector function built with Sizzle.compile - * @param {Element} context - * @param {Array} [results] - * @param {Array} [seed] A set of elements to match against - */ -select = Sizzle.select = function( selector, context, results, seed ) { - var i, tokens, token, type, find, - compiled = typeof selector === "function" && selector, - match = !seed && tokenize( (selector = compiled.selector || selector) ); - - results = results || []; - - // Try to minimize operations if there is only one selector in the list and no seed - // (the latter of which guarantees us context) - if ( match.length === 1 ) { - - // Reduce context if the leading compound selector is an ID - tokens = match[0] = match[0].slice( 0 ); - if ( tokens.length > 2 && (token = tokens[0]).type === "ID" && - context.nodeType === 9 && documentIsHTML && Expr.relative[ tokens[1].type ] ) { - - context = ( Expr.find["ID"]( token.matches[0].replace(runescape, funescape), context ) || [] )[0]; - if ( !context ) { - return results; - - // Precompiled matchers will still verify ancestry, so step up a level - } else if ( compiled ) { - context = context.parentNode; - } - - selector = selector.slice( tokens.shift().value.length ); - } - - // Fetch a seed set for right-to-left matching - i = matchExpr["needsContext"].test( selector ) ? 0 : tokens.length; - while ( i-- ) { - token = tokens[i]; - - // Abort if we hit a combinator - if ( Expr.relative[ (type = token.type) ] ) { - break; - } - if ( (find = Expr.find[ type ]) ) { - // Search, expanding context for leading sibling combinators - if ( (seed = find( - token.matches[0].replace( runescape, funescape ), - rsibling.test( tokens[0].type ) && testContext( context.parentNode ) || context - )) ) { - - // If seed is empty or no tokens remain, we can return early - tokens.splice( i, 1 ); - selector = seed.length && toSelector( tokens ); - if ( !selector ) { - push.apply( results, seed ); - return results; - } - - break; - } - } - } - } - - // Compile and execute a filtering function if one is not provided - // Provide `match` to avoid retokenization if we modified the selector above - ( compiled || compile( selector, match ) )( - seed, - context, - !documentIsHTML, - results, - !context || rsibling.test( selector ) && testContext( context.parentNode ) || context - ); - return results; -}; - -// One-time assignments - -// Sort stability -support.sortStable = expando.split("").sort( sortOrder ).join("") === expando; - -// Support: Chrome 14-35+ -// Always assume duplicates if they aren't passed to the comparison function -support.detectDuplicates = !!hasDuplicate; - -// Initialize against the default document -setDocument(); - -// Support: Webkit<537.32 - Safari 6.0.3/Chrome 25 (fixed in Chrome 27) -// Detached nodes confoundingly follow *each other* -support.sortDetached = assert(function( el ) { - // Should return 1, but returns 4 (following) - return el.compareDocumentPosition( document.createElement("fieldset") ) & 1; -}); - -// Support: IE<8 -// Prevent attribute/property "interpolation" -// https://msdn.microsoft.com/en-us/library/ms536429%28VS.85%29.aspx -if ( !assert(function( el ) { - el.innerHTML = ""; - return el.firstChild.getAttribute("href") === "#" ; -}) ) { - addHandle( "type|href|height|width", function( elem, name, isXML ) { - if ( !isXML ) { - return elem.getAttribute( name, name.toLowerCase() === "type" ? 1 : 2 ); - } - }); -} - -// Support: IE<9 -// Use defaultValue in place of getAttribute("value") -if ( !support.attributes || !assert(function( el ) { - el.innerHTML = ""; - el.firstChild.setAttribute( "value", "" ); - return el.firstChild.getAttribute( "value" ) === ""; -}) ) { - addHandle( "value", function( elem, name, isXML ) { - if ( !isXML && elem.nodeName.toLowerCase() === "input" ) { - return elem.defaultValue; - } - }); -} - -// Support: IE<9 -// Use getAttributeNode to fetch booleans when getAttribute lies -if ( !assert(function( el ) { - return el.getAttribute("disabled") == null; -}) ) { - addHandle( booleans, function( elem, name, isXML ) { - var val; - if ( !isXML ) { - return elem[ name ] === true ? name.toLowerCase() : - (val = elem.getAttributeNode( name )) && val.specified ? - val.value : - null; - } - }); -} - -return Sizzle; - -})( window ); - - - -jQuery.find = Sizzle; -jQuery.expr = Sizzle.selectors; - -// Deprecated -jQuery.expr[ ":" ] = jQuery.expr.pseudos; -jQuery.uniqueSort = jQuery.unique = Sizzle.uniqueSort; -jQuery.text = Sizzle.getText; -jQuery.isXMLDoc = Sizzle.isXML; -jQuery.contains = Sizzle.contains; -jQuery.escapeSelector = Sizzle.escape; - - - - -var dir = function( elem, dir, until ) { - var matched = [], - truncate = until !== undefined; - - while ( ( elem = elem[ dir ] ) && elem.nodeType !== 9 ) { - if ( elem.nodeType === 1 ) { - if ( truncate && jQuery( elem ).is( until ) ) { - break; - } - matched.push( elem ); - } - } - return matched; -}; - - -var siblings = function( n, elem ) { - var matched = []; - - for ( ; n; n = n.nextSibling ) { - if ( n.nodeType === 1 && n !== elem ) { - matched.push( n ); - } - } - - return matched; -}; - - -var rneedsContext = jQuery.expr.match.needsContext; - - - -function nodeName( elem, name ) { - - return elem.nodeName && elem.nodeName.toLowerCase() === name.toLowerCase(); - -}; -var rsingleTag = ( /^<([a-z][^\/\0>:\x20\t\r\n\f]*)[\x20\t\r\n\f]*\/?>(?:<\/\1>|)$/i ); - - - -// Implement the identical functionality for filter and not -function winnow( elements, qualifier, not ) { - if ( isFunction( qualifier ) ) { - return jQuery.grep( elements, function( elem, i ) { - return !!qualifier.call( elem, i, elem ) !== not; - } ); - } - - // Single element - if ( qualifier.nodeType ) { - return jQuery.grep( elements, function( elem ) { - return ( elem === qualifier ) !== not; - } ); - } - - // Arraylike of elements (jQuery, arguments, Array) - if ( typeof qualifier !== "string" ) { - return jQuery.grep( elements, function( elem ) { - return ( indexOf.call( qualifier, elem ) > -1 ) !== not; - } ); - } - - // Filtered directly for both simple and complex selectors - return jQuery.filter( qualifier, elements, not ); -} - -jQuery.filter = function( expr, elems, not ) { - var elem = elems[ 0 ]; - - if ( not ) { - expr = ":not(" + expr + ")"; - } - - if ( elems.length === 1 && elem.nodeType === 1 ) { - return jQuery.find.matchesSelector( elem, expr ) ? [ elem ] : []; - } - - return jQuery.find.matches( expr, jQuery.grep( elems, function( elem ) { - return elem.nodeType === 1; - } ) ); -}; - -jQuery.fn.extend( { - find: function( selector ) { - var i, ret, - len = this.length, - self = this; - - if ( typeof selector !== "string" ) { - return this.pushStack( jQuery( selector ).filter( function() { - for ( i = 0; i < len; i++ ) { - if ( jQuery.contains( self[ i ], this ) ) { - return true; - } - } - } ) ); - } - - ret = this.pushStack( [] ); - - for ( i = 0; i < len; i++ ) { - jQuery.find( selector, self[ i ], ret ); - } - - return len > 1 ? jQuery.uniqueSort( ret ) : ret; - }, - filter: function( selector ) { - return this.pushStack( winnow( this, selector || [], false ) ); - }, - not: function( selector ) { - return this.pushStack( winnow( this, selector || [], true ) ); - }, - is: function( selector ) { - return !!winnow( - this, - - // If this is a positional/relative selector, check membership in the returned set - // so $("p:first").is("p:last") won't return true for a doc with two "p". - typeof selector === "string" && rneedsContext.test( selector ) ? - jQuery( selector ) : - selector || [], - false - ).length; - } -} ); - - -// Initialize a jQuery object - - -// A central reference to the root jQuery(document) -var rootjQuery, - - // A simple way to check for HTML strings - // Prioritize #id over to avoid XSS via location.hash (#9521) - // Strict HTML recognition (#11290: must start with <) - // Shortcut simple #id case for speed - rquickExpr = /^(?:\s*(<[\w\W]+>)[^>]*|#([\w-]+))$/, - - init = jQuery.fn.init = function( selector, context, root ) { - var match, elem; - - // HANDLE: $(""), $(null), $(undefined), $(false) - if ( !selector ) { - return this; - } - - // Method init() accepts an alternate rootjQuery - // so migrate can support jQuery.sub (gh-2101) - root = root || rootjQuery; - - // Handle HTML strings - if ( typeof selector === "string" ) { - if ( selector[ 0 ] === "<" && - selector[ selector.length - 1 ] === ">" && - selector.length >= 3 ) { - - // Assume that strings that start and end with <> are HTML and skip the regex check - match = [ null, selector, null ]; - - } else { - match = rquickExpr.exec( selector ); - } - - // Match html or make sure no context is specified for #id - if ( match && ( match[ 1 ] || !context ) ) { - - // HANDLE: $(html) -> $(array) - if ( match[ 1 ] ) { - context = context instanceof jQuery ? context[ 0 ] : context; - - // Option to run scripts is true for back-compat - // Intentionally let the error be thrown if parseHTML is not present - jQuery.merge( this, jQuery.parseHTML( - match[ 1 ], - context && context.nodeType ? context.ownerDocument || context : document, - true - ) ); - - // HANDLE: $(html, props) - if ( rsingleTag.test( match[ 1 ] ) && jQuery.isPlainObject( context ) ) { - for ( match in context ) { - - // Properties of context are called as methods if possible - if ( isFunction( this[ match ] ) ) { - this[ match ]( context[ match ] ); - - // ...and otherwise set as attributes - } else { - this.attr( match, context[ match ] ); - } - } - } - - return this; - - // HANDLE: $(#id) - } else { - elem = document.getElementById( match[ 2 ] ); - - if ( elem ) { - - // Inject the element directly into the jQuery object - this[ 0 ] = elem; - this.length = 1; - } - return this; - } - - // HANDLE: $(expr, $(...)) - } else if ( !context || context.jquery ) { - return ( context || root ).find( selector ); - - // HANDLE: $(expr, context) - // (which is just equivalent to: $(context).find(expr) - } else { - return this.constructor( context ).find( selector ); - } - - // HANDLE: $(DOMElement) - } else if ( selector.nodeType ) { - this[ 0 ] = selector; - this.length = 1; - return this; - - // HANDLE: $(function) - // Shortcut for document ready - } else if ( isFunction( selector ) ) { - return root.ready !== undefined ? - root.ready( selector ) : - - // Execute immediately if ready is not present - selector( jQuery ); - } - - return jQuery.makeArray( selector, this ); - }; - -// Give the init function the jQuery prototype for later instantiation -init.prototype = jQuery.fn; - -// Initialize central reference -rootjQuery = jQuery( document ); - - -var rparentsprev = /^(?:parents|prev(?:Until|All))/, - - // Methods guaranteed to produce a unique set when starting from a unique set - guaranteedUnique = { - children: true, - contents: true, - next: true, - prev: true - }; - -jQuery.fn.extend( { - has: function( target ) { - var targets = jQuery( target, this ), - l = targets.length; - - return this.filter( function() { - var i = 0; - for ( ; i < l; i++ ) { - if ( jQuery.contains( this, targets[ i ] ) ) { - return true; - } - } - } ); - }, - - closest: function( selectors, context ) { - var cur, - i = 0, - l = this.length, - matched = [], - targets = typeof selectors !== "string" && jQuery( selectors ); - - // Positional selectors never match, since there's no _selection_ context - if ( !rneedsContext.test( selectors ) ) { - for ( ; i < l; i++ ) { - for ( cur = this[ i ]; cur && cur !== context; cur = cur.parentNode ) { - - // Always skip document fragments - if ( cur.nodeType < 11 && ( targets ? - targets.index( cur ) > -1 : - - // Don't pass non-elements to Sizzle - cur.nodeType === 1 && - jQuery.find.matchesSelector( cur, selectors ) ) ) { - - matched.push( cur ); - break; - } - } - } - } - - return this.pushStack( matched.length > 1 ? jQuery.uniqueSort( matched ) : matched ); - }, - - // Determine the position of an element within the set - index: function( elem ) { - - // No argument, return index in parent - if ( !elem ) { - return ( this[ 0 ] && this[ 0 ].parentNode ) ? this.first().prevAll().length : -1; - } - - // Index in selector - if ( typeof elem === "string" ) { - return indexOf.call( jQuery( elem ), this[ 0 ] ); - } - - // Locate the position of the desired element - return indexOf.call( this, - - // If it receives a jQuery object, the first element is used - elem.jquery ? elem[ 0 ] : elem - ); - }, - - add: function( selector, context ) { - return this.pushStack( - jQuery.uniqueSort( - jQuery.merge( this.get(), jQuery( selector, context ) ) - ) - ); - }, - - addBack: function( selector ) { - return this.add( selector == null ? - this.prevObject : this.prevObject.filter( selector ) - ); - } -} ); - -function sibling( cur, dir ) { - while ( ( cur = cur[ dir ] ) && cur.nodeType !== 1 ) {} - return cur; -} - -jQuery.each( { - parent: function( elem ) { - var parent = elem.parentNode; - return parent && parent.nodeType !== 11 ? parent : null; - }, - parents: function( elem ) { - return dir( elem, "parentNode" ); - }, - parentsUntil: function( elem, i, until ) { - return dir( elem, "parentNode", until ); - }, - next: function( elem ) { - return sibling( elem, "nextSibling" ); - }, - prev: function( elem ) { - return sibling( elem, "previousSibling" ); - }, - nextAll: function( elem ) { - return dir( elem, "nextSibling" ); - }, - prevAll: function( elem ) { - return dir( elem, "previousSibling" ); - }, - nextUntil: function( elem, i, until ) { - return dir( elem, "nextSibling", until ); - }, - prevUntil: function( elem, i, until ) { - return dir( elem, "previousSibling", until ); - }, - siblings: function( elem ) { - return siblings( ( elem.parentNode || {} ).firstChild, elem ); - }, - children: function( elem ) { - return siblings( elem.firstChild ); - }, - contents: function( elem ) { - if ( typeof elem.contentDocument !== "undefined" ) { - return elem.contentDocument; - } - - // Support: IE 9 - 11 only, iOS 7 only, Android Browser <=4.3 only - // Treat the template element as a regular one in browsers that - // don't support it. - if ( nodeName( elem, "template" ) ) { - elem = elem.content || elem; - } - - return jQuery.merge( [], elem.childNodes ); - } -}, function( name, fn ) { - jQuery.fn[ name ] = function( until, selector ) { - var matched = jQuery.map( this, fn, until ); - - if ( name.slice( -5 ) !== "Until" ) { - selector = until; - } - - if ( selector && typeof selector === "string" ) { - matched = jQuery.filter( selector, matched ); - } - - if ( this.length > 1 ) { - - // Remove duplicates - if ( !guaranteedUnique[ name ] ) { - jQuery.uniqueSort( matched ); - } - - // Reverse order for parents* and prev-derivatives - if ( rparentsprev.test( name ) ) { - matched.reverse(); - } - } - - return this.pushStack( matched ); - }; -} ); -var rnothtmlwhite = ( /[^\x20\t\r\n\f]+/g ); - - - -// Convert String-formatted options into Object-formatted ones -function createOptions( options ) { - var object = {}; - jQuery.each( options.match( rnothtmlwhite ) || [], function( _, flag ) { - object[ flag ] = true; - } ); - return object; -} - -/* - * Create a callback list using the following parameters: - * - * options: an optional list of space-separated options that will change how - * the callback list behaves or a more traditional option object - * - * By default a callback list will act like an event callback list and can be - * "fired" multiple times. - * - * Possible options: - * - * once: will ensure the callback list can only be fired once (like a Deferred) - * - * memory: will keep track of previous values and will call any callback added - * after the list has been fired right away with the latest "memorized" - * values (like a Deferred) - * - * unique: will ensure a callback can only be added once (no duplicate in the list) - * - * stopOnFalse: interrupt callings when a callback returns false - * - */ -jQuery.Callbacks = function( options ) { - - // Convert options from String-formatted to Object-formatted if needed - // (we check in cache first) - options = typeof options === "string" ? - createOptions( options ) : - jQuery.extend( {}, options ); - - var // Flag to know if list is currently firing - firing, - - // Last fire value for non-forgettable lists - memory, - - // Flag to know if list was already fired - fired, - - // Flag to prevent firing - locked, - - // Actual callback list - list = [], - - // Queue of execution data for repeatable lists - queue = [], - - // Index of currently firing callback (modified by add/remove as needed) - firingIndex = -1, - - // Fire callbacks - fire = function() { - - // Enforce single-firing - locked = locked || options.once; - - // Execute callbacks for all pending executions, - // respecting firingIndex overrides and runtime changes - fired = firing = true; - for ( ; queue.length; firingIndex = -1 ) { - memory = queue.shift(); - while ( ++firingIndex < list.length ) { - - // Run callback and check for early termination - if ( list[ firingIndex ].apply( memory[ 0 ], memory[ 1 ] ) === false && - options.stopOnFalse ) { - - // Jump to end and forget the data so .add doesn't re-fire - firingIndex = list.length; - memory = false; - } - } - } - - // Forget the data if we're done with it - if ( !options.memory ) { - memory = false; - } - - firing = false; - - // Clean up if we're done firing for good - if ( locked ) { - - // Keep an empty list if we have data for future add calls - if ( memory ) { - list = []; - - // Otherwise, this object is spent - } else { - list = ""; - } - } - }, - - // Actual Callbacks object - self = { - - // Add a callback or a collection of callbacks to the list - add: function() { - if ( list ) { - - // If we have memory from a past run, we should fire after adding - if ( memory && !firing ) { - firingIndex = list.length - 1; - queue.push( memory ); - } - - ( function add( args ) { - jQuery.each( args, function( _, arg ) { - if ( isFunction( arg ) ) { - if ( !options.unique || !self.has( arg ) ) { - list.push( arg ); - } - } else if ( arg && arg.length && toType( arg ) !== "string" ) { - - // Inspect recursively - add( arg ); - } - } ); - } )( arguments ); - - if ( memory && !firing ) { - fire(); - } - } - return this; - }, - - // Remove a callback from the list - remove: function() { - jQuery.each( arguments, function( _, arg ) { - var index; - while ( ( index = jQuery.inArray( arg, list, index ) ) > -1 ) { - list.splice( index, 1 ); - - // Handle firing indexes - if ( index <= firingIndex ) { - firingIndex--; - } - } - } ); - return this; - }, - - // Check if a given callback is in the list. - // If no argument is given, return whether or not list has callbacks attached. - has: function( fn ) { - return fn ? - jQuery.inArray( fn, list ) > -1 : - list.length > 0; - }, - - // Remove all callbacks from the list - empty: function() { - if ( list ) { - list = []; - } - return this; - }, - - // Disable .fire and .add - // Abort any current/pending executions - // Clear all callbacks and values - disable: function() { - locked = queue = []; - list = memory = ""; - return this; - }, - disabled: function() { - return !list; - }, - - // Disable .fire - // Also disable .add unless we have memory (since it would have no effect) - // Abort any pending executions - lock: function() { - locked = queue = []; - if ( !memory && !firing ) { - list = memory = ""; - } - return this; - }, - locked: function() { - return !!locked; - }, - - // Call all callbacks with the given context and arguments - fireWith: function( context, args ) { - if ( !locked ) { - args = args || []; - args = [ context, args.slice ? args.slice() : args ]; - queue.push( args ); - if ( !firing ) { - fire(); - } - } - return this; - }, - - // Call all the callbacks with the given arguments - fire: function() { - self.fireWith( this, arguments ); - return this; - }, - - // To know if the callbacks have already been called at least once - fired: function() { - return !!fired; - } - }; - - return self; -}; - - -function Identity( v ) { - return v; -} -function Thrower( ex ) { - throw ex; -} - -function adoptValue( value, resolve, reject, noValue ) { - var method; - - try { - - // Check for promise aspect first to privilege synchronous behavior - if ( value && isFunction( ( method = value.promise ) ) ) { - method.call( value ).done( resolve ).fail( reject ); - - // Other thenables - } else if ( value && isFunction( ( method = value.then ) ) ) { - method.call( value, resolve, reject ); - - // Other non-thenables - } else { - - // Control `resolve` arguments by letting Array#slice cast boolean `noValue` to integer: - // * false: [ value ].slice( 0 ) => resolve( value ) - // * true: [ value ].slice( 1 ) => resolve() - resolve.apply( undefined, [ value ].slice( noValue ) ); - } - - // For Promises/A+, convert exceptions into rejections - // Since jQuery.when doesn't unwrap thenables, we can skip the extra checks appearing in - // Deferred#then to conditionally suppress rejection. - } catch ( value ) { - - // Support: Android 4.0 only - // Strict mode functions invoked without .call/.apply get global-object context - reject.apply( undefined, [ value ] ); - } -} - -jQuery.extend( { - - Deferred: function( func ) { - var tuples = [ - - // action, add listener, callbacks, - // ... .then handlers, argument index, [final state] - [ "notify", "progress", jQuery.Callbacks( "memory" ), - jQuery.Callbacks( "memory" ), 2 ], - [ "resolve", "done", jQuery.Callbacks( "once memory" ), - jQuery.Callbacks( "once memory" ), 0, "resolved" ], - [ "reject", "fail", jQuery.Callbacks( "once memory" ), - jQuery.Callbacks( "once memory" ), 1, "rejected" ] - ], - state = "pending", - promise = { - state: function() { - return state; - }, - always: function() { - deferred.done( arguments ).fail( arguments ); - return this; - }, - "catch": function( fn ) { - return promise.then( null, fn ); - }, - - // Keep pipe for back-compat - pipe: function( /* fnDone, fnFail, fnProgress */ ) { - var fns = arguments; - - return jQuery.Deferred( function( newDefer ) { - jQuery.each( tuples, function( i, tuple ) { - - // Map tuples (progress, done, fail) to arguments (done, fail, progress) - var fn = isFunction( fns[ tuple[ 4 ] ] ) && fns[ tuple[ 4 ] ]; - - // deferred.progress(function() { bind to newDefer or newDefer.notify }) - // deferred.done(function() { bind to newDefer or newDefer.resolve }) - // deferred.fail(function() { bind to newDefer or newDefer.reject }) - deferred[ tuple[ 1 ] ]( function() { - var returned = fn && fn.apply( this, arguments ); - if ( returned && isFunction( returned.promise ) ) { - returned.promise() - .progress( newDefer.notify ) - .done( newDefer.resolve ) - .fail( newDefer.reject ); - } else { - newDefer[ tuple[ 0 ] + "With" ]( - this, - fn ? [ returned ] : arguments - ); - } - } ); - } ); - fns = null; - } ).promise(); - }, - then: function( onFulfilled, onRejected, onProgress ) { - var maxDepth = 0; - function resolve( depth, deferred, handler, special ) { - return function() { - var that = this, - args = arguments, - mightThrow = function() { - var returned, then; - - // Support: Promises/A+ section 2.3.3.3.3 - // https://promisesaplus.com/#point-59 - // Ignore double-resolution attempts - if ( depth < maxDepth ) { - return; - } - - returned = handler.apply( that, args ); - - // Support: Promises/A+ section 2.3.1 - // https://promisesaplus.com/#point-48 - if ( returned === deferred.promise() ) { - throw new TypeError( "Thenable self-resolution" ); - } - - // Support: Promises/A+ sections 2.3.3.1, 3.5 - // https://promisesaplus.com/#point-54 - // https://promisesaplus.com/#point-75 - // Retrieve `then` only once - then = returned && - - // Support: Promises/A+ section 2.3.4 - // https://promisesaplus.com/#point-64 - // Only check objects and functions for thenability - ( typeof returned === "object" || - typeof returned === "function" ) && - returned.then; - - // Handle a returned thenable - if ( isFunction( then ) ) { - - // Special processors (notify) just wait for resolution - if ( special ) { - then.call( - returned, - resolve( maxDepth, deferred, Identity, special ), - resolve( maxDepth, deferred, Thrower, special ) - ); - - // Normal processors (resolve) also hook into progress - } else { - - // ...and disregard older resolution values - maxDepth++; - - then.call( - returned, - resolve( maxDepth, deferred, Identity, special ), - resolve( maxDepth, deferred, Thrower, special ), - resolve( maxDepth, deferred, Identity, - deferred.notifyWith ) - ); - } - - // Handle all other returned values - } else { - - // Only substitute handlers pass on context - // and multiple values (non-spec behavior) - if ( handler !== Identity ) { - that = undefined; - args = [ returned ]; - } - - // Process the value(s) - // Default process is resolve - ( special || deferred.resolveWith )( that, args ); - } - }, - - // Only normal processors (resolve) catch and reject exceptions - process = special ? - mightThrow : - function() { - try { - mightThrow(); - } catch ( e ) { - - if ( jQuery.Deferred.exceptionHook ) { - jQuery.Deferred.exceptionHook( e, - process.stackTrace ); - } - - // Support: Promises/A+ section 2.3.3.3.4.1 - // https://promisesaplus.com/#point-61 - // Ignore post-resolution exceptions - if ( depth + 1 >= maxDepth ) { - - // Only substitute handlers pass on context - // and multiple values (non-spec behavior) - if ( handler !== Thrower ) { - that = undefined; - args = [ e ]; - } - - deferred.rejectWith( that, args ); - } - } - }; - - // Support: Promises/A+ section 2.3.3.3.1 - // https://promisesaplus.com/#point-57 - // Re-resolve promises immediately to dodge false rejection from - // subsequent errors - if ( depth ) { - process(); - } else { - - // Call an optional hook to record the stack, in case of exception - // since it's otherwise lost when execution goes async - if ( jQuery.Deferred.getStackHook ) { - process.stackTrace = jQuery.Deferred.getStackHook(); - } - window.setTimeout( process ); - } - }; - } - - return jQuery.Deferred( function( newDefer ) { - - // progress_handlers.add( ... ) - tuples[ 0 ][ 3 ].add( - resolve( - 0, - newDefer, - isFunction( onProgress ) ? - onProgress : - Identity, - newDefer.notifyWith - ) - ); - - // fulfilled_handlers.add( ... ) - tuples[ 1 ][ 3 ].add( - resolve( - 0, - newDefer, - isFunction( onFulfilled ) ? - onFulfilled : - Identity - ) - ); - - // rejected_handlers.add( ... ) - tuples[ 2 ][ 3 ].add( - resolve( - 0, - newDefer, - isFunction( onRejected ) ? - onRejected : - Thrower - ) - ); - } ).promise(); - }, - - // Get a promise for this deferred - // If obj is provided, the promise aspect is added to the object - promise: function( obj ) { - return obj != null ? jQuery.extend( obj, promise ) : promise; - } - }, - deferred = {}; - - // Add list-specific methods - jQuery.each( tuples, function( i, tuple ) { - var list = tuple[ 2 ], - stateString = tuple[ 5 ]; - - // promise.progress = list.add - // promise.done = list.add - // promise.fail = list.add - promise[ tuple[ 1 ] ] = list.add; - - // Handle state - if ( stateString ) { - list.add( - function() { - - // state = "resolved" (i.e., fulfilled) - // state = "rejected" - state = stateString; - }, - - // rejected_callbacks.disable - // fulfilled_callbacks.disable - tuples[ 3 - i ][ 2 ].disable, - - // rejected_handlers.disable - // fulfilled_handlers.disable - tuples[ 3 - i ][ 3 ].disable, - - // progress_callbacks.lock - tuples[ 0 ][ 2 ].lock, - - // progress_handlers.lock - tuples[ 0 ][ 3 ].lock - ); - } - - // progress_handlers.fire - // fulfilled_handlers.fire - // rejected_handlers.fire - list.add( tuple[ 3 ].fire ); - - // deferred.notify = function() { deferred.notifyWith(...) } - // deferred.resolve = function() { deferred.resolveWith(...) } - // deferred.reject = function() { deferred.rejectWith(...) } - deferred[ tuple[ 0 ] ] = function() { - deferred[ tuple[ 0 ] + "With" ]( this === deferred ? undefined : this, arguments ); - return this; - }; - - // deferred.notifyWith = list.fireWith - // deferred.resolveWith = list.fireWith - // deferred.rejectWith = list.fireWith - deferred[ tuple[ 0 ] + "With" ] = list.fireWith; - } ); - - // Make the deferred a promise - promise.promise( deferred ); - - // Call given func if any - if ( func ) { - func.call( deferred, deferred ); - } - - // All done! - return deferred; - }, - - // Deferred helper - when: function( singleValue ) { - var - - // count of uncompleted subordinates - remaining = arguments.length, - - // count of unprocessed arguments - i = remaining, - - // subordinate fulfillment data - resolveContexts = Array( i ), - resolveValues = slice.call( arguments ), - - // the master Deferred - master = jQuery.Deferred(), - - // subordinate callback factory - updateFunc = function( i ) { - return function( value ) { - resolveContexts[ i ] = this; - resolveValues[ i ] = arguments.length > 1 ? slice.call( arguments ) : value; - if ( !( --remaining ) ) { - master.resolveWith( resolveContexts, resolveValues ); - } - }; - }; - - // Single- and empty arguments are adopted like Promise.resolve - if ( remaining <= 1 ) { - adoptValue( singleValue, master.done( updateFunc( i ) ).resolve, master.reject, - !remaining ); - - // Use .then() to unwrap secondary thenables (cf. gh-3000) - if ( master.state() === "pending" || - isFunction( resolveValues[ i ] && resolveValues[ i ].then ) ) { - - return master.then(); - } - } - - // Multiple arguments are aggregated like Promise.all array elements - while ( i-- ) { - adoptValue( resolveValues[ i ], updateFunc( i ), master.reject ); - } - - return master.promise(); - } -} ); - - -// These usually indicate a programmer mistake during development, -// warn about them ASAP rather than swallowing them by default. -var rerrorNames = /^(Eval|Internal|Range|Reference|Syntax|Type|URI)Error$/; - -jQuery.Deferred.exceptionHook = function( error, stack ) { - - // Support: IE 8 - 9 only - // Console exists when dev tools are open, which can happen at any time - if ( window.console && window.console.warn && error && rerrorNames.test( error.name ) ) { - window.console.warn( "jQuery.Deferred exception: " + error.message, error.stack, stack ); - } -}; - - - - -jQuery.readyException = function( error ) { - window.setTimeout( function() { - throw error; - } ); -}; - - - - -// The deferred used on DOM ready -var readyList = jQuery.Deferred(); - -jQuery.fn.ready = function( fn ) { - - readyList - .then( fn ) - - // Wrap jQuery.readyException in a function so that the lookup - // happens at the time of error handling instead of callback - // registration. - .catch( function( error ) { - jQuery.readyException( error ); - } ); - - return this; -}; - -jQuery.extend( { - - // Is the DOM ready to be used? Set to true once it occurs. - isReady: false, - - // A counter to track how many items to wait for before - // the ready event fires. See #6781 - readyWait: 1, - - // Handle when the DOM is ready - ready: function( wait ) { - - // Abort if there are pending holds or we're already ready - if ( wait === true ? --jQuery.readyWait : jQuery.isReady ) { - return; - } - - // Remember that the DOM is ready - jQuery.isReady = true; - - // If a normal DOM Ready event fired, decrement, and wait if need be - if ( wait !== true && --jQuery.readyWait > 0 ) { - return; - } - - // If there are functions bound, to execute - readyList.resolveWith( document, [ jQuery ] ); - } -} ); - -jQuery.ready.then = readyList.then; - -// The ready event handler and self cleanup method -function completed() { - document.removeEventListener( "DOMContentLoaded", completed ); - window.removeEventListener( "load", completed ); - jQuery.ready(); -} - -// Catch cases where $(document).ready() is called -// after the browser event has already occurred. -// Support: IE <=9 - 10 only -// Older IE sometimes signals "interactive" too soon -if ( document.readyState === "complete" || - ( document.readyState !== "loading" && !document.documentElement.doScroll ) ) { - - // Handle it asynchronously to allow scripts the opportunity to delay ready - window.setTimeout( jQuery.ready ); - -} else { - - // Use the handy event callback - document.addEventListener( "DOMContentLoaded", completed ); - - // A fallback to window.onload, that will always work - window.addEventListener( "load", completed ); -} - - - - -// Multifunctional method to get and set values of a collection -// The value/s can optionally be executed if it's a function -var access = function( elems, fn, key, value, chainable, emptyGet, raw ) { - var i = 0, - len = elems.length, - bulk = key == null; - - // Sets many values - if ( toType( key ) === "object" ) { - chainable = true; - for ( i in key ) { - access( elems, fn, i, key[ i ], true, emptyGet, raw ); - } - - // Sets one value - } else if ( value !== undefined ) { - chainable = true; - - if ( !isFunction( value ) ) { - raw = true; - } - - if ( bulk ) { - - // Bulk operations run against the entire set - if ( raw ) { - fn.call( elems, value ); - fn = null; - - // ...except when executing function values - } else { - bulk = fn; - fn = function( elem, key, value ) { - return bulk.call( jQuery( elem ), value ); - }; - } - } - - if ( fn ) { - for ( ; i < len; i++ ) { - fn( - elems[ i ], key, raw ? - value : - value.call( elems[ i ], i, fn( elems[ i ], key ) ) - ); - } - } - } - - if ( chainable ) { - return elems; - } - - // Gets - if ( bulk ) { - return fn.call( elems ); - } - - return len ? fn( elems[ 0 ], key ) : emptyGet; -}; - - -// Matches dashed string for camelizing -var rmsPrefix = /^-ms-/, - rdashAlpha = /-([a-z])/g; - -// Used by camelCase as callback to replace() -function fcamelCase( all, letter ) { - return letter.toUpperCase(); -} - -// Convert dashed to camelCase; used by the css and data modules -// Support: IE <=9 - 11, Edge 12 - 15 -// Microsoft forgot to hump their vendor prefix (#9572) -function camelCase( string ) { - return string.replace( rmsPrefix, "ms-" ).replace( rdashAlpha, fcamelCase ); -} -var acceptData = function( owner ) { - - // Accepts only: - // - Node - // - Node.ELEMENT_NODE - // - Node.DOCUMENT_NODE - // - Object - // - Any - return owner.nodeType === 1 || owner.nodeType === 9 || !( +owner.nodeType ); -}; - - - - -function Data() { - this.expando = jQuery.expando + Data.uid++; -} - -Data.uid = 1; - -Data.prototype = { - - cache: function( owner ) { - - // Check if the owner object already has a cache - var value = owner[ this.expando ]; - - // If not, create one - if ( !value ) { - value = {}; - - // We can accept data for non-element nodes in modern browsers, - // but we should not, see #8335. - // Always return an empty object. - if ( acceptData( owner ) ) { - - // If it is a node unlikely to be stringify-ed or looped over - // use plain assignment - if ( owner.nodeType ) { - owner[ this.expando ] = value; - - // Otherwise secure it in a non-enumerable property - // configurable must be true to allow the property to be - // deleted when data is removed - } else { - Object.defineProperty( owner, this.expando, { - value: value, - configurable: true - } ); - } - } - } - - return value; - }, - set: function( owner, data, value ) { - var prop, - cache = this.cache( owner ); - - // Handle: [ owner, key, value ] args - // Always use camelCase key (gh-2257) - if ( typeof data === "string" ) { - cache[ camelCase( data ) ] = value; - - // Handle: [ owner, { properties } ] args - } else { - - // Copy the properties one-by-one to the cache object - for ( prop in data ) { - cache[ camelCase( prop ) ] = data[ prop ]; - } - } - return cache; - }, - get: function( owner, key ) { - return key === undefined ? - this.cache( owner ) : - - // Always use camelCase key (gh-2257) - owner[ this.expando ] && owner[ this.expando ][ camelCase( key ) ]; - }, - access: function( owner, key, value ) { - - // In cases where either: - // - // 1. No key was specified - // 2. A string key was specified, but no value provided - // - // Take the "read" path and allow the get method to determine - // which value to return, respectively either: - // - // 1. The entire cache object - // 2. The data stored at the key - // - if ( key === undefined || - ( ( key && typeof key === "string" ) && value === undefined ) ) { - - return this.get( owner, key ); - } - - // When the key is not a string, or both a key and value - // are specified, set or extend (existing objects) with either: - // - // 1. An object of properties - // 2. A key and value - // - this.set( owner, key, value ); - - // Since the "set" path can have two possible entry points - // return the expected data based on which path was taken[*] - return value !== undefined ? value : key; - }, - remove: function( owner, key ) { - var i, - cache = owner[ this.expando ]; - - if ( cache === undefined ) { - return; - } - - if ( key !== undefined ) { - - // Support array or space separated string of keys - if ( Array.isArray( key ) ) { - - // If key is an array of keys... - // We always set camelCase keys, so remove that. - key = key.map( camelCase ); - } else { - key = camelCase( key ); - - // If a key with the spaces exists, use it. - // Otherwise, create an array by matching non-whitespace - key = key in cache ? - [ key ] : - ( key.match( rnothtmlwhite ) || [] ); - } - - i = key.length; - - while ( i-- ) { - delete cache[ key[ i ] ]; - } - } - - // Remove the expando if there's no more data - if ( key === undefined || jQuery.isEmptyObject( cache ) ) { - - // Support: Chrome <=35 - 45 - // Webkit & Blink performance suffers when deleting properties - // from DOM nodes, so set to undefined instead - // https://bugs.chromium.org/p/chromium/issues/detail?id=378607 (bug restricted) - if ( owner.nodeType ) { - owner[ this.expando ] = undefined; - } else { - delete owner[ this.expando ]; - } - } - }, - hasData: function( owner ) { - var cache = owner[ this.expando ]; - return cache !== undefined && !jQuery.isEmptyObject( cache ); - } -}; -var dataPriv = new Data(); - -var dataUser = new Data(); - - - -// Implementation Summary -// -// 1. Enforce API surface and semantic compatibility with 1.9.x branch -// 2. Improve the module's maintainability by reducing the storage -// paths to a single mechanism. -// 3. Use the same single mechanism to support "private" and "user" data. -// 4. _Never_ expose "private" data to user code (TODO: Drop _data, _removeData) -// 5. Avoid exposing implementation details on user objects (eg. expando properties) -// 6. Provide a clear path for implementation upgrade to WeakMap in 2014 - -var rbrace = /^(?:\{[\w\W]*\}|\[[\w\W]*\])$/, - rmultiDash = /[A-Z]/g; - -function getData( data ) { - if ( data === "true" ) { - return true; - } - - if ( data === "false" ) { - return false; - } - - if ( data === "null" ) { - return null; - } - - // Only convert to a number if it doesn't change the string - if ( data === +data + "" ) { - return +data; - } - - if ( rbrace.test( data ) ) { - return JSON.parse( data ); - } - - return data; -} - -function dataAttr( elem, key, data ) { - var name; - - // If nothing was found internally, try to fetch any - // data from the HTML5 data-* attribute - if ( data === undefined && elem.nodeType === 1 ) { - name = "data-" + key.replace( rmultiDash, "-$&" ).toLowerCase(); - data = elem.getAttribute( name ); - - if ( typeof data === "string" ) { - try { - data = getData( data ); - } catch ( e ) {} - - // Make sure we set the data so it isn't changed later - dataUser.set( elem, key, data ); - } else { - data = undefined; - } - } - return data; -} - -jQuery.extend( { - hasData: function( elem ) { - return dataUser.hasData( elem ) || dataPriv.hasData( elem ); - }, - - data: function( elem, name, data ) { - return dataUser.access( elem, name, data ); - }, - - removeData: function( elem, name ) { - dataUser.remove( elem, name ); - }, - - // TODO: Now that all calls to _data and _removeData have been replaced - // with direct calls to dataPriv methods, these can be deprecated. - _data: function( elem, name, data ) { - return dataPriv.access( elem, name, data ); - }, - - _removeData: function( elem, name ) { - dataPriv.remove( elem, name ); - } -} ); - -jQuery.fn.extend( { - data: function( key, value ) { - var i, name, data, - elem = this[ 0 ], - attrs = elem && elem.attributes; - - // Gets all values - if ( key === undefined ) { - if ( this.length ) { - data = dataUser.get( elem ); - - if ( elem.nodeType === 1 && !dataPriv.get( elem, "hasDataAttrs" ) ) { - i = attrs.length; - while ( i-- ) { - - // Support: IE 11 only - // The attrs elements can be null (#14894) - if ( attrs[ i ] ) { - name = attrs[ i ].name; - if ( name.indexOf( "data-" ) === 0 ) { - name = camelCase( name.slice( 5 ) ); - dataAttr( elem, name, data[ name ] ); - } - } - } - dataPriv.set( elem, "hasDataAttrs", true ); - } - } - - return data; - } - - // Sets multiple values - if ( typeof key === "object" ) { - return this.each( function() { - dataUser.set( this, key ); - } ); - } - - return access( this, function( value ) { - var data; - - // The calling jQuery object (element matches) is not empty - // (and therefore has an element appears at this[ 0 ]) and the - // `value` parameter was not undefined. An empty jQuery object - // will result in `undefined` for elem = this[ 0 ] which will - // throw an exception if an attempt to read a data cache is made. - if ( elem && value === undefined ) { - - // Attempt to get data from the cache - // The key will always be camelCased in Data - data = dataUser.get( elem, key ); - if ( data !== undefined ) { - return data; - } - - // Attempt to "discover" the data in - // HTML5 custom data-* attrs - data = dataAttr( elem, key ); - if ( data !== undefined ) { - return data; - } - - // We tried really hard, but the data doesn't exist. - return; - } - - // Set the data... - this.each( function() { - - // We always store the camelCased key - dataUser.set( this, key, value ); - } ); - }, null, value, arguments.length > 1, null, true ); - }, - - removeData: function( key ) { - return this.each( function() { - dataUser.remove( this, key ); - } ); - } -} ); - - -jQuery.extend( { - queue: function( elem, type, data ) { - var queue; - - if ( elem ) { - type = ( type || "fx" ) + "queue"; - queue = dataPriv.get( elem, type ); - - // Speed up dequeue by getting out quickly if this is just a lookup - if ( data ) { - if ( !queue || Array.isArray( data ) ) { - queue = dataPriv.access( elem, type, jQuery.makeArray( data ) ); - } else { - queue.push( data ); - } - } - return queue || []; - } - }, - - dequeue: function( elem, type ) { - type = type || "fx"; - - var queue = jQuery.queue( elem, type ), - startLength = queue.length, - fn = queue.shift(), - hooks = jQuery._queueHooks( elem, type ), - next = function() { - jQuery.dequeue( elem, type ); - }; - - // If the fx queue is dequeued, always remove the progress sentinel - if ( fn === "inprogress" ) { - fn = queue.shift(); - startLength--; - } - - if ( fn ) { - - // Add a progress sentinel to prevent the fx queue from being - // automatically dequeued - if ( type === "fx" ) { - queue.unshift( "inprogress" ); - } - - // Clear up the last queue stop function - delete hooks.stop; - fn.call( elem, next, hooks ); - } - - if ( !startLength && hooks ) { - hooks.empty.fire(); - } - }, - - // Not public - generate a queueHooks object, or return the current one - _queueHooks: function( elem, type ) { - var key = type + "queueHooks"; - return dataPriv.get( elem, key ) || dataPriv.access( elem, key, { - empty: jQuery.Callbacks( "once memory" ).add( function() { - dataPriv.remove( elem, [ type + "queue", key ] ); - } ) - } ); - } -} ); - -jQuery.fn.extend( { - queue: function( type, data ) { - var setter = 2; - - if ( typeof type !== "string" ) { - data = type; - type = "fx"; - setter--; - } - - if ( arguments.length < setter ) { - return jQuery.queue( this[ 0 ], type ); - } - - return data === undefined ? - this : - this.each( function() { - var queue = jQuery.queue( this, type, data ); - - // Ensure a hooks for this queue - jQuery._queueHooks( this, type ); - - if ( type === "fx" && queue[ 0 ] !== "inprogress" ) { - jQuery.dequeue( this, type ); - } - } ); - }, - dequeue: function( type ) { - return this.each( function() { - jQuery.dequeue( this, type ); - } ); - }, - clearQueue: function( type ) { - return this.queue( type || "fx", [] ); - }, - - // Get a promise resolved when queues of a certain type - // are emptied (fx is the type by default) - promise: function( type, obj ) { - var tmp, - count = 1, - defer = jQuery.Deferred(), - elements = this, - i = this.length, - resolve = function() { - if ( !( --count ) ) { - defer.resolveWith( elements, [ elements ] ); - } - }; - - if ( typeof type !== "string" ) { - obj = type; - type = undefined; - } - type = type || "fx"; - - while ( i-- ) { - tmp = dataPriv.get( elements[ i ], type + "queueHooks" ); - if ( tmp && tmp.empty ) { - count++; - tmp.empty.add( resolve ); - } - } - resolve(); - return defer.promise( obj ); - } -} ); -var pnum = ( /[+-]?(?:\d*\.|)\d+(?:[eE][+-]?\d+|)/ ).source; - -var rcssNum = new RegExp( "^(?:([+-])=|)(" + pnum + ")([a-z%]*)$", "i" ); - - -var cssExpand = [ "Top", "Right", "Bottom", "Left" ]; - -var documentElement = document.documentElement; - - - - var isAttached = function( elem ) { - return jQuery.contains( elem.ownerDocument, elem ); - }, - composed = { composed: true }; - - // Support: IE 9 - 11+, Edge 12 - 18+, iOS 10.0 - 10.2 only - // Check attachment across shadow DOM boundaries when possible (gh-3504) - // Support: iOS 10.0-10.2 only - // Early iOS 10 versions support `attachShadow` but not `getRootNode`, - // leading to errors. We need to check for `getRootNode`. - if ( documentElement.getRootNode ) { - isAttached = function( elem ) { - return jQuery.contains( elem.ownerDocument, elem ) || - elem.getRootNode( composed ) === elem.ownerDocument; - }; - } -var isHiddenWithinTree = function( elem, el ) { - - // isHiddenWithinTree might be called from jQuery#filter function; - // in that case, element will be second argument - elem = el || elem; - - // Inline style trumps all - return elem.style.display === "none" || - elem.style.display === "" && - - // Otherwise, check computed style - // Support: Firefox <=43 - 45 - // Disconnected elements can have computed display: none, so first confirm that elem is - // in the document. - isAttached( elem ) && - - jQuery.css( elem, "display" ) === "none"; - }; - -var swap = function( elem, options, callback, args ) { - var ret, name, - old = {}; - - // Remember the old values, and insert the new ones - for ( name in options ) { - old[ name ] = elem.style[ name ]; - elem.style[ name ] = options[ name ]; - } - - ret = callback.apply( elem, args || [] ); - - // Revert the old values - for ( name in options ) { - elem.style[ name ] = old[ name ]; - } - - return ret; -}; - - - - -function adjustCSS( elem, prop, valueParts, tween ) { - var adjusted, scale, - maxIterations = 20, - currentValue = tween ? - function() { - return tween.cur(); - } : - function() { - return jQuery.css( elem, prop, "" ); - }, - initial = currentValue(), - unit = valueParts && valueParts[ 3 ] || ( jQuery.cssNumber[ prop ] ? "" : "px" ), - - // Starting value computation is required for potential unit mismatches - initialInUnit = elem.nodeType && - ( jQuery.cssNumber[ prop ] || unit !== "px" && +initial ) && - rcssNum.exec( jQuery.css( elem, prop ) ); - - if ( initialInUnit && initialInUnit[ 3 ] !== unit ) { - - // Support: Firefox <=54 - // Halve the iteration target value to prevent interference from CSS upper bounds (gh-2144) - initial = initial / 2; - - // Trust units reported by jQuery.css - unit = unit || initialInUnit[ 3 ]; - - // Iteratively approximate from a nonzero starting point - initialInUnit = +initial || 1; - - while ( maxIterations-- ) { - - // Evaluate and update our best guess (doubling guesses that zero out). - // Finish if the scale equals or crosses 1 (making the old*new product non-positive). - jQuery.style( elem, prop, initialInUnit + unit ); - if ( ( 1 - scale ) * ( 1 - ( scale = currentValue() / initial || 0.5 ) ) <= 0 ) { - maxIterations = 0; - } - initialInUnit = initialInUnit / scale; - - } - - initialInUnit = initialInUnit * 2; - jQuery.style( elem, prop, initialInUnit + unit ); - - // Make sure we update the tween properties later on - valueParts = valueParts || []; - } - - if ( valueParts ) { - initialInUnit = +initialInUnit || +initial || 0; - - // Apply relative offset (+=/-=) if specified - adjusted = valueParts[ 1 ] ? - initialInUnit + ( valueParts[ 1 ] + 1 ) * valueParts[ 2 ] : - +valueParts[ 2 ]; - if ( tween ) { - tween.unit = unit; - tween.start = initialInUnit; - tween.end = adjusted; - } - } - return adjusted; -} - - -var defaultDisplayMap = {}; - -function getDefaultDisplay( elem ) { - var temp, - doc = elem.ownerDocument, - nodeName = elem.nodeName, - display = defaultDisplayMap[ nodeName ]; - - if ( display ) { - return display; - } - - temp = doc.body.appendChild( doc.createElement( nodeName ) ); - display = jQuery.css( temp, "display" ); - - temp.parentNode.removeChild( temp ); - - if ( display === "none" ) { - display = "block"; - } - defaultDisplayMap[ nodeName ] = display; - - return display; -} - -function showHide( elements, show ) { - var display, elem, - values = [], - index = 0, - length = elements.length; - - // Determine new display value for elements that need to change - for ( ; index < length; index++ ) { - elem = elements[ index ]; - if ( !elem.style ) { - continue; - } - - display = elem.style.display; - if ( show ) { - - // Since we force visibility upon cascade-hidden elements, an immediate (and slow) - // check is required in this first loop unless we have a nonempty display value (either - // inline or about-to-be-restored) - if ( display === "none" ) { - values[ index ] = dataPriv.get( elem, "display" ) || null; - if ( !values[ index ] ) { - elem.style.display = ""; - } - } - if ( elem.style.display === "" && isHiddenWithinTree( elem ) ) { - values[ index ] = getDefaultDisplay( elem ); - } - } else { - if ( display !== "none" ) { - values[ index ] = "none"; - - // Remember what we're overwriting - dataPriv.set( elem, "display", display ); - } - } - } - - // Set the display of the elements in a second loop to avoid constant reflow - for ( index = 0; index < length; index++ ) { - if ( values[ index ] != null ) { - elements[ index ].style.display = values[ index ]; - } - } - - return elements; -} - -jQuery.fn.extend( { - show: function() { - return showHide( this, true ); - }, - hide: function() { - return showHide( this ); - }, - toggle: function( state ) { - if ( typeof state === "boolean" ) { - return state ? this.show() : this.hide(); - } - - return this.each( function() { - if ( isHiddenWithinTree( this ) ) { - jQuery( this ).show(); - } else { - jQuery( this ).hide(); - } - } ); - } -} ); -var rcheckableType = ( /^(?:checkbox|radio)$/i ); - -var rtagName = ( /<([a-z][^\/\0>\x20\t\r\n\f]*)/i ); - -var rscriptType = ( /^$|^module$|\/(?:java|ecma)script/i ); - - - -// We have to close these tags to support XHTML (#13200) -var wrapMap = { - - // Support: IE <=9 only - option: [ 1, "" ], - - // XHTML parsers do not magically insert elements in the - // same way that tag soup parsers do. So we cannot shorten - // this by omitting or other required elements. - thead: [ 1, "", "
    " ], - col: [ 2, "", "
    " ], - tr: [ 2, "", "
    " ], - td: [ 3, "", "
    " ], - - _default: [ 0, "", "" ] -}; - -// Support: IE <=9 only -wrapMap.optgroup = wrapMap.option; - -wrapMap.tbody = wrapMap.tfoot = wrapMap.colgroup = wrapMap.caption = wrapMap.thead; -wrapMap.th = wrapMap.td; - - -function getAll( context, tag ) { - - // Support: IE <=9 - 11 only - // Use typeof to avoid zero-argument method invocation on host objects (#15151) - var ret; - - if ( typeof context.getElementsByTagName !== "undefined" ) { - ret = context.getElementsByTagName( tag || "*" ); - - } else if ( typeof context.querySelectorAll !== "undefined" ) { - ret = context.querySelectorAll( tag || "*" ); - - } else { - ret = []; - } - - if ( tag === undefined || tag && nodeName( context, tag ) ) { - return jQuery.merge( [ context ], ret ); - } - - return ret; -} - - -// Mark scripts as having already been evaluated -function setGlobalEval( elems, refElements ) { - var i = 0, - l = elems.length; - - for ( ; i < l; i++ ) { - dataPriv.set( - elems[ i ], - "globalEval", - !refElements || dataPriv.get( refElements[ i ], "globalEval" ) - ); - } -} - - -var rhtml = /<|&#?\w+;/; - -function buildFragment( elems, context, scripts, selection, ignored ) { - var elem, tmp, tag, wrap, attached, j, - fragment = context.createDocumentFragment(), - nodes = [], - i = 0, - l = elems.length; - - for ( ; i < l; i++ ) { - elem = elems[ i ]; - - if ( elem || elem === 0 ) { - - // Add nodes directly - if ( toType( elem ) === "object" ) { - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - jQuery.merge( nodes, elem.nodeType ? [ elem ] : elem ); - - // Convert non-html into a text node - } else if ( !rhtml.test( elem ) ) { - nodes.push( context.createTextNode( elem ) ); - - // Convert html into DOM nodes - } else { - tmp = tmp || fragment.appendChild( context.createElement( "div" ) ); - - // Deserialize a standard representation - tag = ( rtagName.exec( elem ) || [ "", "" ] )[ 1 ].toLowerCase(); - wrap = wrapMap[ tag ] || wrapMap._default; - tmp.innerHTML = wrap[ 1 ] + jQuery.htmlPrefilter( elem ) + wrap[ 2 ]; - - // Descend through wrappers to the right content - j = wrap[ 0 ]; - while ( j-- ) { - tmp = tmp.lastChild; - } - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - jQuery.merge( nodes, tmp.childNodes ); - - // Remember the top-level container - tmp = fragment.firstChild; - - // Ensure the created nodes are orphaned (#12392) - tmp.textContent = ""; - } - } - } - - // Remove wrapper from fragment - fragment.textContent = ""; - - i = 0; - while ( ( elem = nodes[ i++ ] ) ) { - - // Skip elements already in the context collection (trac-4087) - if ( selection && jQuery.inArray( elem, selection ) > -1 ) { - if ( ignored ) { - ignored.push( elem ); - } - continue; - } - - attached = isAttached( elem ); - - // Append to fragment - tmp = getAll( fragment.appendChild( elem ), "script" ); - - // Preserve script evaluation history - if ( attached ) { - setGlobalEval( tmp ); - } - - // Capture executables - if ( scripts ) { - j = 0; - while ( ( elem = tmp[ j++ ] ) ) { - if ( rscriptType.test( elem.type || "" ) ) { - scripts.push( elem ); - } - } - } - } - - return fragment; -} - - -( function() { - var fragment = document.createDocumentFragment(), - div = fragment.appendChild( document.createElement( "div" ) ), - input = document.createElement( "input" ); - - // Support: Android 4.0 - 4.3 only - // Check state lost if the name is set (#11217) - // Support: Windows Web Apps (WWA) - // `name` and `type` must use .setAttribute for WWA (#14901) - input.setAttribute( "type", "radio" ); - input.setAttribute( "checked", "checked" ); - input.setAttribute( "name", "t" ); - - div.appendChild( input ); - - // Support: Android <=4.1 only - // Older WebKit doesn't clone checked state correctly in fragments - support.checkClone = div.cloneNode( true ).cloneNode( true ).lastChild.checked; - - // Support: IE <=11 only - // Make sure textarea (and checkbox) defaultValue is properly cloned - div.innerHTML = ""; - support.noCloneChecked = !!div.cloneNode( true ).lastChild.defaultValue; -} )(); - - -var - rkeyEvent = /^key/, - rmouseEvent = /^(?:mouse|pointer|contextmenu|drag|drop)|click/, - rtypenamespace = /^([^.]*)(?:\.(.+)|)/; - -function returnTrue() { - return true; -} - -function returnFalse() { - return false; -} - -// Support: IE <=9 - 11+ -// focus() and blur() are asynchronous, except when they are no-op. -// So expect focus to be synchronous when the element is already active, -// and blur to be synchronous when the element is not already active. -// (focus and blur are always synchronous in other supported browsers, -// this just defines when we can count on it). -function expectSync( elem, type ) { - return ( elem === safeActiveElement() ) === ( type === "focus" ); -} - -// Support: IE <=9 only -// Accessing document.activeElement can throw unexpectedly -// https://bugs.jquery.com/ticket/13393 -function safeActiveElement() { - try { - return document.activeElement; - } catch ( err ) { } -} - -function on( elem, types, selector, data, fn, one ) { - var origFn, type; - - // Types can be a map of types/handlers - if ( typeof types === "object" ) { - - // ( types-Object, selector, data ) - if ( typeof selector !== "string" ) { - - // ( types-Object, data ) - data = data || selector; - selector = undefined; - } - for ( type in types ) { - on( elem, type, selector, data, types[ type ], one ); - } - return elem; - } - - if ( data == null && fn == null ) { - - // ( types, fn ) - fn = selector; - data = selector = undefined; - } else if ( fn == null ) { - if ( typeof selector === "string" ) { - - // ( types, selector, fn ) - fn = data; - data = undefined; - } else { - - // ( types, data, fn ) - fn = data; - data = selector; - selector = undefined; - } - } - if ( fn === false ) { - fn = returnFalse; - } else if ( !fn ) { - return elem; - } - - if ( one === 1 ) { - origFn = fn; - fn = function( event ) { - - // Can use an empty set, since event contains the info - jQuery().off( event ); - return origFn.apply( this, arguments ); - }; - - // Use same guid so caller can remove using origFn - fn.guid = origFn.guid || ( origFn.guid = jQuery.guid++ ); - } - return elem.each( function() { - jQuery.event.add( this, types, fn, data, selector ); - } ); -} - -/* - * Helper functions for managing events -- not part of the public interface. - * Props to Dean Edwards' addEvent library for many of the ideas. - */ -jQuery.event = { - - global: {}, - - add: function( elem, types, handler, data, selector ) { - - var handleObjIn, eventHandle, tmp, - events, t, handleObj, - special, handlers, type, namespaces, origType, - elemData = dataPriv.get( elem ); - - // Don't attach events to noData or text/comment nodes (but allow plain objects) - if ( !elemData ) { - return; - } - - // Caller can pass in an object of custom data in lieu of the handler - if ( handler.handler ) { - handleObjIn = handler; - handler = handleObjIn.handler; - selector = handleObjIn.selector; - } - - // Ensure that invalid selectors throw exceptions at attach time - // Evaluate against documentElement in case elem is a non-element node (e.g., document) - if ( selector ) { - jQuery.find.matchesSelector( documentElement, selector ); - } - - // Make sure that the handler has a unique ID, used to find/remove it later - if ( !handler.guid ) { - handler.guid = jQuery.guid++; - } - - // Init the element's event structure and main handler, if this is the first - if ( !( events = elemData.events ) ) { - events = elemData.events = {}; - } - if ( !( eventHandle = elemData.handle ) ) { - eventHandle = elemData.handle = function( e ) { - - // Discard the second event of a jQuery.event.trigger() and - // when an event is called after a page has unloaded - return typeof jQuery !== "undefined" && jQuery.event.triggered !== e.type ? - jQuery.event.dispatch.apply( elem, arguments ) : undefined; - }; - } - - // Handle multiple events separated by a space - types = ( types || "" ).match( rnothtmlwhite ) || [ "" ]; - t = types.length; - while ( t-- ) { - tmp = rtypenamespace.exec( types[ t ] ) || []; - type = origType = tmp[ 1 ]; - namespaces = ( tmp[ 2 ] || "" ).split( "." ).sort(); - - // There *must* be a type, no attaching namespace-only handlers - if ( !type ) { - continue; - } - - // If event changes its type, use the special event handlers for the changed type - special = jQuery.event.special[ type ] || {}; - - // If selector defined, determine special event api type, otherwise given type - type = ( selector ? special.delegateType : special.bindType ) || type; - - // Update special based on newly reset type - special = jQuery.event.special[ type ] || {}; - - // handleObj is passed to all event handlers - handleObj = jQuery.extend( { - type: type, - origType: origType, - data: data, - handler: handler, - guid: handler.guid, - selector: selector, - needsContext: selector && jQuery.expr.match.needsContext.test( selector ), - namespace: namespaces.join( "." ) - }, handleObjIn ); - - // Init the event handler queue if we're the first - if ( !( handlers = events[ type ] ) ) { - handlers = events[ type ] = []; - handlers.delegateCount = 0; - - // Only use addEventListener if the special events handler returns false - if ( !special.setup || - special.setup.call( elem, data, namespaces, eventHandle ) === false ) { - - if ( elem.addEventListener ) { - elem.addEventListener( type, eventHandle ); - } - } - } - - if ( special.add ) { - special.add.call( elem, handleObj ); - - if ( !handleObj.handler.guid ) { - handleObj.handler.guid = handler.guid; - } - } - - // Add to the element's handler list, delegates in front - if ( selector ) { - handlers.splice( handlers.delegateCount++, 0, handleObj ); - } else { - handlers.push( handleObj ); - } - - // Keep track of which events have ever been used, for event optimization - jQuery.event.global[ type ] = true; - } - - }, - - // Detach an event or set of events from an element - remove: function( elem, types, handler, selector, mappedTypes ) { - - var j, origCount, tmp, - events, t, handleObj, - special, handlers, type, namespaces, origType, - elemData = dataPriv.hasData( elem ) && dataPriv.get( elem ); - - if ( !elemData || !( events = elemData.events ) ) { - return; - } - - // Once for each type.namespace in types; type may be omitted - types = ( types || "" ).match( rnothtmlwhite ) || [ "" ]; - t = types.length; - while ( t-- ) { - tmp = rtypenamespace.exec( types[ t ] ) || []; - type = origType = tmp[ 1 ]; - namespaces = ( tmp[ 2 ] || "" ).split( "." ).sort(); - - // Unbind all events (on this namespace, if provided) for the element - if ( !type ) { - for ( type in events ) { - jQuery.event.remove( elem, type + types[ t ], handler, selector, true ); - } - continue; - } - - special = jQuery.event.special[ type ] || {}; - type = ( selector ? special.delegateType : special.bindType ) || type; - handlers = events[ type ] || []; - tmp = tmp[ 2 ] && - new RegExp( "(^|\\.)" + namespaces.join( "\\.(?:.*\\.|)" ) + "(\\.|$)" ); - - // Remove matching events - origCount = j = handlers.length; - while ( j-- ) { - handleObj = handlers[ j ]; - - if ( ( mappedTypes || origType === handleObj.origType ) && - ( !handler || handler.guid === handleObj.guid ) && - ( !tmp || tmp.test( handleObj.namespace ) ) && - ( !selector || selector === handleObj.selector || - selector === "**" && handleObj.selector ) ) { - handlers.splice( j, 1 ); - - if ( handleObj.selector ) { - handlers.delegateCount--; - } - if ( special.remove ) { - special.remove.call( elem, handleObj ); - } - } - } - - // Remove generic event handler if we removed something and no more handlers exist - // (avoids potential for endless recursion during removal of special event handlers) - if ( origCount && !handlers.length ) { - if ( !special.teardown || - special.teardown.call( elem, namespaces, elemData.handle ) === false ) { - - jQuery.removeEvent( elem, type, elemData.handle ); - } - - delete events[ type ]; - } - } - - // Remove data and the expando if it's no longer used - if ( jQuery.isEmptyObject( events ) ) { - dataPriv.remove( elem, "handle events" ); - } - }, - - dispatch: function( nativeEvent ) { - - // Make a writable jQuery.Event from the native event object - var event = jQuery.event.fix( nativeEvent ); - - var i, j, ret, matched, handleObj, handlerQueue, - args = new Array( arguments.length ), - handlers = ( dataPriv.get( this, "events" ) || {} )[ event.type ] || [], - special = jQuery.event.special[ event.type ] || {}; - - // Use the fix-ed jQuery.Event rather than the (read-only) native event - args[ 0 ] = event; - - for ( i = 1; i < arguments.length; i++ ) { - args[ i ] = arguments[ i ]; - } - - event.delegateTarget = this; - - // Call the preDispatch hook for the mapped type, and let it bail if desired - if ( special.preDispatch && special.preDispatch.call( this, event ) === false ) { - return; - } - - // Determine handlers - handlerQueue = jQuery.event.handlers.call( this, event, handlers ); - - // Run delegates first; they may want to stop propagation beneath us - i = 0; - while ( ( matched = handlerQueue[ i++ ] ) && !event.isPropagationStopped() ) { - event.currentTarget = matched.elem; - - j = 0; - while ( ( handleObj = matched.handlers[ j++ ] ) && - !event.isImmediatePropagationStopped() ) { - - // If the event is namespaced, then each handler is only invoked if it is - // specially universal or its namespaces are a superset of the event's. - if ( !event.rnamespace || handleObj.namespace === false || - event.rnamespace.test( handleObj.namespace ) ) { - - event.handleObj = handleObj; - event.data = handleObj.data; - - ret = ( ( jQuery.event.special[ handleObj.origType ] || {} ).handle || - handleObj.handler ).apply( matched.elem, args ); - - if ( ret !== undefined ) { - if ( ( event.result = ret ) === false ) { - event.preventDefault(); - event.stopPropagation(); - } - } - } - } - } - - // Call the postDispatch hook for the mapped type - if ( special.postDispatch ) { - special.postDispatch.call( this, event ); - } - - return event.result; - }, - - handlers: function( event, handlers ) { - var i, handleObj, sel, matchedHandlers, matchedSelectors, - handlerQueue = [], - delegateCount = handlers.delegateCount, - cur = event.target; - - // Find delegate handlers - if ( delegateCount && - - // Support: IE <=9 - // Black-hole SVG instance trees (trac-13180) - cur.nodeType && - - // Support: Firefox <=42 - // Suppress spec-violating clicks indicating a non-primary pointer button (trac-3861) - // https://www.w3.org/TR/DOM-Level-3-Events/#event-type-click - // Support: IE 11 only - // ...but not arrow key "clicks" of radio inputs, which can have `button` -1 (gh-2343) - !( event.type === "click" && event.button >= 1 ) ) { - - for ( ; cur !== this; cur = cur.parentNode || this ) { - - // Don't check non-elements (#13208) - // Don't process clicks on disabled elements (#6911, #8165, #11382, #11764) - if ( cur.nodeType === 1 && !( event.type === "click" && cur.disabled === true ) ) { - matchedHandlers = []; - matchedSelectors = {}; - for ( i = 0; i < delegateCount; i++ ) { - handleObj = handlers[ i ]; - - // Don't conflict with Object.prototype properties (#13203) - sel = handleObj.selector + " "; - - if ( matchedSelectors[ sel ] === undefined ) { - matchedSelectors[ sel ] = handleObj.needsContext ? - jQuery( sel, this ).index( cur ) > -1 : - jQuery.find( sel, this, null, [ cur ] ).length; - } - if ( matchedSelectors[ sel ] ) { - matchedHandlers.push( handleObj ); - } - } - if ( matchedHandlers.length ) { - handlerQueue.push( { elem: cur, handlers: matchedHandlers } ); - } - } - } - } - - // Add the remaining (directly-bound) handlers - cur = this; - if ( delegateCount < handlers.length ) { - handlerQueue.push( { elem: cur, handlers: handlers.slice( delegateCount ) } ); - } - - return handlerQueue; - }, - - addProp: function( name, hook ) { - Object.defineProperty( jQuery.Event.prototype, name, { - enumerable: true, - configurable: true, - - get: isFunction( hook ) ? - function() { - if ( this.originalEvent ) { - return hook( this.originalEvent ); - } - } : - function() { - if ( this.originalEvent ) { - return this.originalEvent[ name ]; - } - }, - - set: function( value ) { - Object.defineProperty( this, name, { - enumerable: true, - configurable: true, - writable: true, - value: value - } ); - } - } ); - }, - - fix: function( originalEvent ) { - return originalEvent[ jQuery.expando ] ? - originalEvent : - new jQuery.Event( originalEvent ); - }, - - special: { - load: { - - // Prevent triggered image.load events from bubbling to window.load - noBubble: true - }, - click: { - - // Utilize native event to ensure correct state for checkable inputs - setup: function( data ) { - - // For mutual compressibility with _default, replace `this` access with a local var. - // `|| data` is dead code meant only to preserve the variable through minification. - var el = this || data; - - // Claim the first handler - if ( rcheckableType.test( el.type ) && - el.click && nodeName( el, "input" ) ) { - - // dataPriv.set( el, "click", ... ) - leverageNative( el, "click", returnTrue ); - } - - // Return false to allow normal processing in the caller - return false; - }, - trigger: function( data ) { - - // For mutual compressibility with _default, replace `this` access with a local var. - // `|| data` is dead code meant only to preserve the variable through minification. - var el = this || data; - - // Force setup before triggering a click - if ( rcheckableType.test( el.type ) && - el.click && nodeName( el, "input" ) ) { - - leverageNative( el, "click" ); - } - - // Return non-false to allow normal event-path propagation - return true; - }, - - // For cross-browser consistency, suppress native .click() on links - // Also prevent it if we're currently inside a leveraged native-event stack - _default: function( event ) { - var target = event.target; - return rcheckableType.test( target.type ) && - target.click && nodeName( target, "input" ) && - dataPriv.get( target, "click" ) || - nodeName( target, "a" ); - } - }, - - beforeunload: { - postDispatch: function( event ) { - - // Support: Firefox 20+ - // Firefox doesn't alert if the returnValue field is not set. - if ( event.result !== undefined && event.originalEvent ) { - event.originalEvent.returnValue = event.result; - } - } - } - } -}; - -// Ensure the presence of an event listener that handles manually-triggered -// synthetic events by interrupting progress until reinvoked in response to -// *native* events that it fires directly, ensuring that state changes have -// already occurred before other listeners are invoked. -function leverageNative( el, type, expectSync ) { - - // Missing expectSync indicates a trigger call, which must force setup through jQuery.event.add - if ( !expectSync ) { - if ( dataPriv.get( el, type ) === undefined ) { - jQuery.event.add( el, type, returnTrue ); - } - return; - } - - // Register the controller as a special universal handler for all event namespaces - dataPriv.set( el, type, false ); - jQuery.event.add( el, type, { - namespace: false, - handler: function( event ) { - var notAsync, result, - saved = dataPriv.get( this, type ); - - if ( ( event.isTrigger & 1 ) && this[ type ] ) { - - // Interrupt processing of the outer synthetic .trigger()ed event - // Saved data should be false in such cases, but might be a leftover capture object - // from an async native handler (gh-4350) - if ( !saved.length ) { - - // Store arguments for use when handling the inner native event - // There will always be at least one argument (an event object), so this array - // will not be confused with a leftover capture object. - saved = slice.call( arguments ); - dataPriv.set( this, type, saved ); - - // Trigger the native event and capture its result - // Support: IE <=9 - 11+ - // focus() and blur() are asynchronous - notAsync = expectSync( this, type ); - this[ type ](); - result = dataPriv.get( this, type ); - if ( saved !== result || notAsync ) { - dataPriv.set( this, type, false ); - } else { - result = {}; - } - if ( saved !== result ) { - - // Cancel the outer synthetic event - event.stopImmediatePropagation(); - event.preventDefault(); - return result.value; - } - - // If this is an inner synthetic event for an event with a bubbling surrogate - // (focus or blur), assume that the surrogate already propagated from triggering the - // native event and prevent that from happening again here. - // This technically gets the ordering wrong w.r.t. to `.trigger()` (in which the - // bubbling surrogate propagates *after* the non-bubbling base), but that seems - // less bad than duplication. - } else if ( ( jQuery.event.special[ type ] || {} ).delegateType ) { - event.stopPropagation(); - } - - // If this is a native event triggered above, everything is now in order - // Fire an inner synthetic event with the original arguments - } else if ( saved.length ) { - - // ...and capture the result - dataPriv.set( this, type, { - value: jQuery.event.trigger( - - // Support: IE <=9 - 11+ - // Extend with the prototype to reset the above stopImmediatePropagation() - jQuery.extend( saved[ 0 ], jQuery.Event.prototype ), - saved.slice( 1 ), - this - ) - } ); - - // Abort handling of the native event - event.stopImmediatePropagation(); - } - } - } ); -} - -jQuery.removeEvent = function( elem, type, handle ) { - - // This "if" is needed for plain objects - if ( elem.removeEventListener ) { - elem.removeEventListener( type, handle ); - } -}; - -jQuery.Event = function( src, props ) { - - // Allow instantiation without the 'new' keyword - if ( !( this instanceof jQuery.Event ) ) { - return new jQuery.Event( src, props ); - } - - // Event object - if ( src && src.type ) { - this.originalEvent = src; - this.type = src.type; - - // Events bubbling up the document may have been marked as prevented - // by a handler lower down the tree; reflect the correct value. - this.isDefaultPrevented = src.defaultPrevented || - src.defaultPrevented === undefined && - - // Support: Android <=2.3 only - src.returnValue === false ? - returnTrue : - returnFalse; - - // Create target properties - // Support: Safari <=6 - 7 only - // Target should not be a text node (#504, #13143) - this.target = ( src.target && src.target.nodeType === 3 ) ? - src.target.parentNode : - src.target; - - this.currentTarget = src.currentTarget; - this.relatedTarget = src.relatedTarget; - - // Event type - } else { - this.type = src; - } - - // Put explicitly provided properties onto the event object - if ( props ) { - jQuery.extend( this, props ); - } - - // Create a timestamp if incoming event doesn't have one - this.timeStamp = src && src.timeStamp || Date.now(); - - // Mark it as fixed - this[ jQuery.expando ] = true; -}; - -// jQuery.Event is based on DOM3 Events as specified by the ECMAScript Language Binding -// https://www.w3.org/TR/2003/WD-DOM-Level-3-Events-20030331/ecma-script-binding.html -jQuery.Event.prototype = { - constructor: jQuery.Event, - isDefaultPrevented: returnFalse, - isPropagationStopped: returnFalse, - isImmediatePropagationStopped: returnFalse, - isSimulated: false, - - preventDefault: function() { - var e = this.originalEvent; - - this.isDefaultPrevented = returnTrue; - - if ( e && !this.isSimulated ) { - e.preventDefault(); - } - }, - stopPropagation: function() { - var e = this.originalEvent; - - this.isPropagationStopped = returnTrue; - - if ( e && !this.isSimulated ) { - e.stopPropagation(); - } - }, - stopImmediatePropagation: function() { - var e = this.originalEvent; - - this.isImmediatePropagationStopped = returnTrue; - - if ( e && !this.isSimulated ) { - e.stopImmediatePropagation(); - } - - this.stopPropagation(); - } -}; - -// Includes all common event props including KeyEvent and MouseEvent specific props -jQuery.each( { - altKey: true, - bubbles: true, - cancelable: true, - changedTouches: true, - ctrlKey: true, - detail: true, - eventPhase: true, - metaKey: true, - pageX: true, - pageY: true, - shiftKey: true, - view: true, - "char": true, - code: true, - charCode: true, - key: true, - keyCode: true, - button: true, - buttons: true, - clientX: true, - clientY: true, - offsetX: true, - offsetY: true, - pointerId: true, - pointerType: true, - screenX: true, - screenY: true, - targetTouches: true, - toElement: true, - touches: true, - - which: function( event ) { - var button = event.button; - - // Add which for key events - if ( event.which == null && rkeyEvent.test( event.type ) ) { - return event.charCode != null ? event.charCode : event.keyCode; - } - - // Add which for click: 1 === left; 2 === middle; 3 === right - if ( !event.which && button !== undefined && rmouseEvent.test( event.type ) ) { - if ( button & 1 ) { - return 1; - } - - if ( button & 2 ) { - return 3; - } - - if ( button & 4 ) { - return 2; - } - - return 0; - } - - return event.which; - } -}, jQuery.event.addProp ); - -jQuery.each( { focus: "focusin", blur: "focusout" }, function( type, delegateType ) { - jQuery.event.special[ type ] = { - - // Utilize native event if possible so blur/focus sequence is correct - setup: function() { - - // Claim the first handler - // dataPriv.set( this, "focus", ... ) - // dataPriv.set( this, "blur", ... ) - leverageNative( this, type, expectSync ); - - // Return false to allow normal processing in the caller - return false; - }, - trigger: function() { - - // Force setup before trigger - leverageNative( this, type ); - - // Return non-false to allow normal event-path propagation - return true; - }, - - delegateType: delegateType - }; -} ); - -// Create mouseenter/leave events using mouseover/out and event-time checks -// so that event delegation works in jQuery. -// Do the same for pointerenter/pointerleave and pointerover/pointerout -// -// Support: Safari 7 only -// Safari sends mouseenter too often; see: -// https://bugs.chromium.org/p/chromium/issues/detail?id=470258 -// for the description of the bug (it existed in older Chrome versions as well). -jQuery.each( { - mouseenter: "mouseover", - mouseleave: "mouseout", - pointerenter: "pointerover", - pointerleave: "pointerout" -}, function( orig, fix ) { - jQuery.event.special[ orig ] = { - delegateType: fix, - bindType: fix, - - handle: function( event ) { - var ret, - target = this, - related = event.relatedTarget, - handleObj = event.handleObj; - - // For mouseenter/leave call the handler if related is outside the target. - // NB: No relatedTarget if the mouse left/entered the browser window - if ( !related || ( related !== target && !jQuery.contains( target, related ) ) ) { - event.type = handleObj.origType; - ret = handleObj.handler.apply( this, arguments ); - event.type = fix; - } - return ret; - } - }; -} ); - -jQuery.fn.extend( { - - on: function( types, selector, data, fn ) { - return on( this, types, selector, data, fn ); - }, - one: function( types, selector, data, fn ) { - return on( this, types, selector, data, fn, 1 ); - }, - off: function( types, selector, fn ) { - var handleObj, type; - if ( types && types.preventDefault && types.handleObj ) { - - // ( event ) dispatched jQuery.Event - handleObj = types.handleObj; - jQuery( types.delegateTarget ).off( - handleObj.namespace ? - handleObj.origType + "." + handleObj.namespace : - handleObj.origType, - handleObj.selector, - handleObj.handler - ); - return this; - } - if ( typeof types === "object" ) { - - // ( types-object [, selector] ) - for ( type in types ) { - this.off( type, selector, types[ type ] ); - } - return this; - } - if ( selector === false || typeof selector === "function" ) { - - // ( types [, fn] ) - fn = selector; - selector = undefined; - } - if ( fn === false ) { - fn = returnFalse; - } - return this.each( function() { - jQuery.event.remove( this, types, fn, selector ); - } ); - } -} ); - - -var - - /* eslint-disable max-len */ - - // See https://github.com/eslint/eslint/issues/3229 - rxhtmlTag = /<(?!area|br|col|embed|hr|img|input|link|meta|param)(([a-z][^\/\0>\x20\t\r\n\f]*)[^>]*)\/>/gi, - - /* eslint-enable */ - - // Support: IE <=10 - 11, Edge 12 - 13 only - // In IE/Edge using regex groups here causes severe slowdowns. - // See https://connect.microsoft.com/IE/feedback/details/1736512/ - rnoInnerhtml = /\s*$/g; - -// Prefer a tbody over its parent table for containing new rows -function manipulationTarget( elem, content ) { - if ( nodeName( elem, "table" ) && - nodeName( content.nodeType !== 11 ? content : content.firstChild, "tr" ) ) { - - return jQuery( elem ).children( "tbody" )[ 0 ] || elem; - } - - return elem; -} - -// Replace/restore the type attribute of script elements for safe DOM manipulation -function disableScript( elem ) { - elem.type = ( elem.getAttribute( "type" ) !== null ) + "/" + elem.type; - return elem; -} -function restoreScript( elem ) { - if ( ( elem.type || "" ).slice( 0, 5 ) === "true/" ) { - elem.type = elem.type.slice( 5 ); - } else { - elem.removeAttribute( "type" ); - } - - return elem; -} - -function cloneCopyEvent( src, dest ) { - var i, l, type, pdataOld, pdataCur, udataOld, udataCur, events; - - if ( dest.nodeType !== 1 ) { - return; - } - - // 1. Copy private data: events, handlers, etc. - if ( dataPriv.hasData( src ) ) { - pdataOld = dataPriv.access( src ); - pdataCur = dataPriv.set( dest, pdataOld ); - events = pdataOld.events; - - if ( events ) { - delete pdataCur.handle; - pdataCur.events = {}; - - for ( type in events ) { - for ( i = 0, l = events[ type ].length; i < l; i++ ) { - jQuery.event.add( dest, type, events[ type ][ i ] ); - } - } - } - } - - // 2. Copy user data - if ( dataUser.hasData( src ) ) { - udataOld = dataUser.access( src ); - udataCur = jQuery.extend( {}, udataOld ); - - dataUser.set( dest, udataCur ); - } -} - -// Fix IE bugs, see support tests -function fixInput( src, dest ) { - var nodeName = dest.nodeName.toLowerCase(); - - // Fails to persist the checked state of a cloned checkbox or radio button. - if ( nodeName === "input" && rcheckableType.test( src.type ) ) { - dest.checked = src.checked; - - // Fails to return the selected option to the default selected state when cloning options - } else if ( nodeName === "input" || nodeName === "textarea" ) { - dest.defaultValue = src.defaultValue; - } -} - -function domManip( collection, args, callback, ignored ) { - - // Flatten any nested arrays - args = concat.apply( [], args ); - - var fragment, first, scripts, hasScripts, node, doc, - i = 0, - l = collection.length, - iNoClone = l - 1, - value = args[ 0 ], - valueIsFunction = isFunction( value ); - - // We can't cloneNode fragments that contain checked, in WebKit - if ( valueIsFunction || - ( l > 1 && typeof value === "string" && - !support.checkClone && rchecked.test( value ) ) ) { - return collection.each( function( index ) { - var self = collection.eq( index ); - if ( valueIsFunction ) { - args[ 0 ] = value.call( this, index, self.html() ); - } - domManip( self, args, callback, ignored ); - } ); - } - - if ( l ) { - fragment = buildFragment( args, collection[ 0 ].ownerDocument, false, collection, ignored ); - first = fragment.firstChild; - - if ( fragment.childNodes.length === 1 ) { - fragment = first; - } - - // Require either new content or an interest in ignored elements to invoke the callback - if ( first || ignored ) { - scripts = jQuery.map( getAll( fragment, "script" ), disableScript ); - hasScripts = scripts.length; - - // Use the original fragment for the last item - // instead of the first because it can end up - // being emptied incorrectly in certain situations (#8070). - for ( ; i < l; i++ ) { - node = fragment; - - if ( i !== iNoClone ) { - node = jQuery.clone( node, true, true ); - - // Keep references to cloned scripts for later restoration - if ( hasScripts ) { - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - jQuery.merge( scripts, getAll( node, "script" ) ); - } - } - - callback.call( collection[ i ], node, i ); - } - - if ( hasScripts ) { - doc = scripts[ scripts.length - 1 ].ownerDocument; - - // Reenable scripts - jQuery.map( scripts, restoreScript ); - - // Evaluate executable scripts on first document insertion - for ( i = 0; i < hasScripts; i++ ) { - node = scripts[ i ]; - if ( rscriptType.test( node.type || "" ) && - !dataPriv.access( node, "globalEval" ) && - jQuery.contains( doc, node ) ) { - - if ( node.src && ( node.type || "" ).toLowerCase() !== "module" ) { - - // Optional AJAX dependency, but won't run scripts if not present - if ( jQuery._evalUrl && !node.noModule ) { - jQuery._evalUrl( node.src, { - nonce: node.nonce || node.getAttribute( "nonce" ) - } ); - } - } else { - DOMEval( node.textContent.replace( rcleanScript, "" ), node, doc ); - } - } - } - } - } - } - - return collection; -} - -function remove( elem, selector, keepData ) { - var node, - nodes = selector ? jQuery.filter( selector, elem ) : elem, - i = 0; - - for ( ; ( node = nodes[ i ] ) != null; i++ ) { - if ( !keepData && node.nodeType === 1 ) { - jQuery.cleanData( getAll( node ) ); - } - - if ( node.parentNode ) { - if ( keepData && isAttached( node ) ) { - setGlobalEval( getAll( node, "script" ) ); - } - node.parentNode.removeChild( node ); - } - } - - return elem; -} - -jQuery.extend( { - htmlPrefilter: function( html ) { - return html.replace( rxhtmlTag, "<$1>" ); - }, - - clone: function( elem, dataAndEvents, deepDataAndEvents ) { - var i, l, srcElements, destElements, - clone = elem.cloneNode( true ), - inPage = isAttached( elem ); - - // Fix IE cloning issues - if ( !support.noCloneChecked && ( elem.nodeType === 1 || elem.nodeType === 11 ) && - !jQuery.isXMLDoc( elem ) ) { - - // We eschew Sizzle here for performance reasons: https://jsperf.com/getall-vs-sizzle/2 - destElements = getAll( clone ); - srcElements = getAll( elem ); - - for ( i = 0, l = srcElements.length; i < l; i++ ) { - fixInput( srcElements[ i ], destElements[ i ] ); - } - } - - // Copy the events from the original to the clone - if ( dataAndEvents ) { - if ( deepDataAndEvents ) { - srcElements = srcElements || getAll( elem ); - destElements = destElements || getAll( clone ); - - for ( i = 0, l = srcElements.length; i < l; i++ ) { - cloneCopyEvent( srcElements[ i ], destElements[ i ] ); - } - } else { - cloneCopyEvent( elem, clone ); - } - } - - // Preserve script evaluation history - destElements = getAll( clone, "script" ); - if ( destElements.length > 0 ) { - setGlobalEval( destElements, !inPage && getAll( elem, "script" ) ); - } - - // Return the cloned set - return clone; - }, - - cleanData: function( elems ) { - var data, elem, type, - special = jQuery.event.special, - i = 0; - - for ( ; ( elem = elems[ i ] ) !== undefined; i++ ) { - if ( acceptData( elem ) ) { - if ( ( data = elem[ dataPriv.expando ] ) ) { - if ( data.events ) { - for ( type in data.events ) { - if ( special[ type ] ) { - jQuery.event.remove( elem, type ); - - // This is a shortcut to avoid jQuery.event.remove's overhead - } else { - jQuery.removeEvent( elem, type, data.handle ); - } - } - } - - // Support: Chrome <=35 - 45+ - // Assign undefined instead of using delete, see Data#remove - elem[ dataPriv.expando ] = undefined; - } - if ( elem[ dataUser.expando ] ) { - - // Support: Chrome <=35 - 45+ - // Assign undefined instead of using delete, see Data#remove - elem[ dataUser.expando ] = undefined; - } - } - } - } -} ); - -jQuery.fn.extend( { - detach: function( selector ) { - return remove( this, selector, true ); - }, - - remove: function( selector ) { - return remove( this, selector ); - }, - - text: function( value ) { - return access( this, function( value ) { - return value === undefined ? - jQuery.text( this ) : - this.empty().each( function() { - if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) { - this.textContent = value; - } - } ); - }, null, value, arguments.length ); - }, - - append: function() { - return domManip( this, arguments, function( elem ) { - if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) { - var target = manipulationTarget( this, elem ); - target.appendChild( elem ); - } - } ); - }, - - prepend: function() { - return domManip( this, arguments, function( elem ) { - if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) { - var target = manipulationTarget( this, elem ); - target.insertBefore( elem, target.firstChild ); - } - } ); - }, - - before: function() { - return domManip( this, arguments, function( elem ) { - if ( this.parentNode ) { - this.parentNode.insertBefore( elem, this ); - } - } ); - }, - - after: function() { - return domManip( this, arguments, function( elem ) { - if ( this.parentNode ) { - this.parentNode.insertBefore( elem, this.nextSibling ); - } - } ); - }, - - empty: function() { - var elem, - i = 0; - - for ( ; ( elem = this[ i ] ) != null; i++ ) { - if ( elem.nodeType === 1 ) { - - // Prevent memory leaks - jQuery.cleanData( getAll( elem, false ) ); - - // Remove any remaining nodes - elem.textContent = ""; - } - } - - return this; - }, - - clone: function( dataAndEvents, deepDataAndEvents ) { - dataAndEvents = dataAndEvents == null ? false : dataAndEvents; - deepDataAndEvents = deepDataAndEvents == null ? dataAndEvents : deepDataAndEvents; - - return this.map( function() { - return jQuery.clone( this, dataAndEvents, deepDataAndEvents ); - } ); - }, - - html: function( value ) { - return access( this, function( value ) { - var elem = this[ 0 ] || {}, - i = 0, - l = this.length; - - if ( value === undefined && elem.nodeType === 1 ) { - return elem.innerHTML; - } - - // See if we can take a shortcut and just use innerHTML - if ( typeof value === "string" && !rnoInnerhtml.test( value ) && - !wrapMap[ ( rtagName.exec( value ) || [ "", "" ] )[ 1 ].toLowerCase() ] ) { - - value = jQuery.htmlPrefilter( value ); - - try { - for ( ; i < l; i++ ) { - elem = this[ i ] || {}; - - // Remove element nodes and prevent memory leaks - if ( elem.nodeType === 1 ) { - jQuery.cleanData( getAll( elem, false ) ); - elem.innerHTML = value; - } - } - - elem = 0; - - // If using innerHTML throws an exception, use the fallback method - } catch ( e ) {} - } - - if ( elem ) { - this.empty().append( value ); - } - }, null, value, arguments.length ); - }, - - replaceWith: function() { - var ignored = []; - - // Make the changes, replacing each non-ignored context element with the new content - return domManip( this, arguments, function( elem ) { - var parent = this.parentNode; - - if ( jQuery.inArray( this, ignored ) < 0 ) { - jQuery.cleanData( getAll( this ) ); - if ( parent ) { - parent.replaceChild( elem, this ); - } - } - - // Force callback invocation - }, ignored ); - } -} ); - -jQuery.each( { - appendTo: "append", - prependTo: "prepend", - insertBefore: "before", - insertAfter: "after", - replaceAll: "replaceWith" -}, function( name, original ) { - jQuery.fn[ name ] = function( selector ) { - var elems, - ret = [], - insert = jQuery( selector ), - last = insert.length - 1, - i = 0; - - for ( ; i <= last; i++ ) { - elems = i === last ? this : this.clone( true ); - jQuery( insert[ i ] )[ original ]( elems ); - - // Support: Android <=4.0 only, PhantomJS 1 only - // .get() because push.apply(_, arraylike) throws on ancient WebKit - push.apply( ret, elems.get() ); - } - - return this.pushStack( ret ); - }; -} ); -var rnumnonpx = new RegExp( "^(" + pnum + ")(?!px)[a-z%]+$", "i" ); - -var getStyles = function( elem ) { - - // Support: IE <=11 only, Firefox <=30 (#15098, #14150) - // IE throws on elements created in popups - // FF meanwhile throws on frame elements through "defaultView.getComputedStyle" - var view = elem.ownerDocument.defaultView; - - if ( !view || !view.opener ) { - view = window; - } - - return view.getComputedStyle( elem ); - }; - -var rboxStyle = new RegExp( cssExpand.join( "|" ), "i" ); - - - -( function() { - - // Executing both pixelPosition & boxSizingReliable tests require only one layout - // so they're executed at the same time to save the second computation. - function computeStyleTests() { - - // This is a singleton, we need to execute it only once - if ( !div ) { - return; - } - - container.style.cssText = "position:absolute;left:-11111px;width:60px;" + - "margin-top:1px;padding:0;border:0"; - div.style.cssText = - "position:relative;display:block;box-sizing:border-box;overflow:scroll;" + - "margin:auto;border:1px;padding:1px;" + - "width:60%;top:1%"; - documentElement.appendChild( container ).appendChild( div ); - - var divStyle = window.getComputedStyle( div ); - pixelPositionVal = divStyle.top !== "1%"; - - // Support: Android 4.0 - 4.3 only, Firefox <=3 - 44 - reliableMarginLeftVal = roundPixelMeasures( divStyle.marginLeft ) === 12; - - // Support: Android 4.0 - 4.3 only, Safari <=9.1 - 10.1, iOS <=7.0 - 9.3 - // Some styles come back with percentage values, even though they shouldn't - div.style.right = "60%"; - pixelBoxStylesVal = roundPixelMeasures( divStyle.right ) === 36; - - // Support: IE 9 - 11 only - // Detect misreporting of content dimensions for box-sizing:border-box elements - boxSizingReliableVal = roundPixelMeasures( divStyle.width ) === 36; - - // Support: IE 9 only - // Detect overflow:scroll screwiness (gh-3699) - // Support: Chrome <=64 - // Don't get tricked when zoom affects offsetWidth (gh-4029) - div.style.position = "absolute"; - scrollboxSizeVal = roundPixelMeasures( div.offsetWidth / 3 ) === 12; - - documentElement.removeChild( container ); - - // Nullify the div so it wouldn't be stored in the memory and - // it will also be a sign that checks already performed - div = null; - } - - function roundPixelMeasures( measure ) { - return Math.round( parseFloat( measure ) ); - } - - var pixelPositionVal, boxSizingReliableVal, scrollboxSizeVal, pixelBoxStylesVal, - reliableMarginLeftVal, - container = document.createElement( "div" ), - div = document.createElement( "div" ); - - // Finish early in limited (non-browser) environments - if ( !div.style ) { - return; - } - - // Support: IE <=9 - 11 only - // Style of cloned element affects source element cloned (#8908) - div.style.backgroundClip = "content-box"; - div.cloneNode( true ).style.backgroundClip = ""; - support.clearCloneStyle = div.style.backgroundClip === "content-box"; - - jQuery.extend( support, { - boxSizingReliable: function() { - computeStyleTests(); - return boxSizingReliableVal; - }, - pixelBoxStyles: function() { - computeStyleTests(); - return pixelBoxStylesVal; - }, - pixelPosition: function() { - computeStyleTests(); - return pixelPositionVal; - }, - reliableMarginLeft: function() { - computeStyleTests(); - return reliableMarginLeftVal; - }, - scrollboxSize: function() { - computeStyleTests(); - return scrollboxSizeVal; - } - } ); -} )(); - - -function curCSS( elem, name, computed ) { - var width, minWidth, maxWidth, ret, - - // Support: Firefox 51+ - // Retrieving style before computed somehow - // fixes an issue with getting wrong values - // on detached elements - style = elem.style; - - computed = computed || getStyles( elem ); - - // getPropertyValue is needed for: - // .css('filter') (IE 9 only, #12537) - // .css('--customProperty) (#3144) - if ( computed ) { - ret = computed.getPropertyValue( name ) || computed[ name ]; - - if ( ret === "" && !isAttached( elem ) ) { - ret = jQuery.style( elem, name ); - } - - // A tribute to the "awesome hack by Dean Edwards" - // Android Browser returns percentage for some values, - // but width seems to be reliably pixels. - // This is against the CSSOM draft spec: - // https://drafts.csswg.org/cssom/#resolved-values - if ( !support.pixelBoxStyles() && rnumnonpx.test( ret ) && rboxStyle.test( name ) ) { - - // Remember the original values - width = style.width; - minWidth = style.minWidth; - maxWidth = style.maxWidth; - - // Put in the new values to get a computed value out - style.minWidth = style.maxWidth = style.width = ret; - ret = computed.width; - - // Revert the changed values - style.width = width; - style.minWidth = minWidth; - style.maxWidth = maxWidth; - } - } - - return ret !== undefined ? - - // Support: IE <=9 - 11 only - // IE returns zIndex value as an integer. - ret + "" : - ret; -} - - -function addGetHookIf( conditionFn, hookFn ) { - - // Define the hook, we'll check on the first run if it's really needed. - return { - get: function() { - if ( conditionFn() ) { - - // Hook not needed (or it's not possible to use it due - // to missing dependency), remove it. - delete this.get; - return; - } - - // Hook needed; redefine it so that the support test is not executed again. - return ( this.get = hookFn ).apply( this, arguments ); - } - }; -} - - -var cssPrefixes = [ "Webkit", "Moz", "ms" ], - emptyStyle = document.createElement( "div" ).style, - vendorProps = {}; - -// Return a vendor-prefixed property or undefined -function vendorPropName( name ) { - - // Check for vendor prefixed names - var capName = name[ 0 ].toUpperCase() + name.slice( 1 ), - i = cssPrefixes.length; - - while ( i-- ) { - name = cssPrefixes[ i ] + capName; - if ( name in emptyStyle ) { - return name; - } - } -} - -// Return a potentially-mapped jQuery.cssProps or vendor prefixed property -function finalPropName( name ) { - var final = jQuery.cssProps[ name ] || vendorProps[ name ]; - - if ( final ) { - return final; - } - if ( name in emptyStyle ) { - return name; - } - return vendorProps[ name ] = vendorPropName( name ) || name; -} - - -var - - // Swappable if display is none or starts with table - // except "table", "table-cell", or "table-caption" - // See here for display values: https://developer.mozilla.org/en-US/docs/CSS/display - rdisplayswap = /^(none|table(?!-c[ea]).+)/, - rcustomProp = /^--/, - cssShow = { position: "absolute", visibility: "hidden", display: "block" }, - cssNormalTransform = { - letterSpacing: "0", - fontWeight: "400" - }; - -function setPositiveNumber( elem, value, subtract ) { - - // Any relative (+/-) values have already been - // normalized at this point - var matches = rcssNum.exec( value ); - return matches ? - - // Guard against undefined "subtract", e.g., when used as in cssHooks - Math.max( 0, matches[ 2 ] - ( subtract || 0 ) ) + ( matches[ 3 ] || "px" ) : - value; -} - -function boxModelAdjustment( elem, dimension, box, isBorderBox, styles, computedVal ) { - var i = dimension === "width" ? 1 : 0, - extra = 0, - delta = 0; - - // Adjustment may not be necessary - if ( box === ( isBorderBox ? "border" : "content" ) ) { - return 0; - } - - for ( ; i < 4; i += 2 ) { - - // Both box models exclude margin - if ( box === "margin" ) { - delta += jQuery.css( elem, box + cssExpand[ i ], true, styles ); - } - - // If we get here with a content-box, we're seeking "padding" or "border" or "margin" - if ( !isBorderBox ) { - - // Add padding - delta += jQuery.css( elem, "padding" + cssExpand[ i ], true, styles ); - - // For "border" or "margin", add border - if ( box !== "padding" ) { - delta += jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles ); - - // But still keep track of it otherwise - } else { - extra += jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles ); - } - - // If we get here with a border-box (content + padding + border), we're seeking "content" or - // "padding" or "margin" - } else { - - // For "content", subtract padding - if ( box === "content" ) { - delta -= jQuery.css( elem, "padding" + cssExpand[ i ], true, styles ); - } - - // For "content" or "padding", subtract border - if ( box !== "margin" ) { - delta -= jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles ); - } - } - } - - // Account for positive content-box scroll gutter when requested by providing computedVal - if ( !isBorderBox && computedVal >= 0 ) { - - // offsetWidth/offsetHeight is a rounded sum of content, padding, scroll gutter, and border - // Assuming integer scroll gutter, subtract the rest and round down - delta += Math.max( 0, Math.ceil( - elem[ "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ) ] - - computedVal - - delta - - extra - - 0.5 - - // If offsetWidth/offsetHeight is unknown, then we can't determine content-box scroll gutter - // Use an explicit zero to avoid NaN (gh-3964) - ) ) || 0; - } - - return delta; -} - -function getWidthOrHeight( elem, dimension, extra ) { - - // Start with computed style - var styles = getStyles( elem ), - - // To avoid forcing a reflow, only fetch boxSizing if we need it (gh-4322). - // Fake content-box until we know it's needed to know the true value. - boxSizingNeeded = !support.boxSizingReliable() || extra, - isBorderBox = boxSizingNeeded && - jQuery.css( elem, "boxSizing", false, styles ) === "border-box", - valueIsBorderBox = isBorderBox, - - val = curCSS( elem, dimension, styles ), - offsetProp = "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ); - - // Support: Firefox <=54 - // Return a confounding non-pixel value or feign ignorance, as appropriate. - if ( rnumnonpx.test( val ) ) { - if ( !extra ) { - return val; - } - val = "auto"; - } - - - // Fall back to offsetWidth/offsetHeight when value is "auto" - // This happens for inline elements with no explicit setting (gh-3571) - // Support: Android <=4.1 - 4.3 only - // Also use offsetWidth/offsetHeight for misreported inline dimensions (gh-3602) - // Support: IE 9-11 only - // Also use offsetWidth/offsetHeight for when box sizing is unreliable - // We use getClientRects() to check for hidden/disconnected. - // In those cases, the computed value can be trusted to be border-box - if ( ( !support.boxSizingReliable() && isBorderBox || - val === "auto" || - !parseFloat( val ) && jQuery.css( elem, "display", false, styles ) === "inline" ) && - elem.getClientRects().length ) { - - isBorderBox = jQuery.css( elem, "boxSizing", false, styles ) === "border-box"; - - // Where available, offsetWidth/offsetHeight approximate border box dimensions. - // Where not available (e.g., SVG), assume unreliable box-sizing and interpret the - // retrieved value as a content box dimension. - valueIsBorderBox = offsetProp in elem; - if ( valueIsBorderBox ) { - val = elem[ offsetProp ]; - } - } - - // Normalize "" and auto - val = parseFloat( val ) || 0; - - // Adjust for the element's box model - return ( val + - boxModelAdjustment( - elem, - dimension, - extra || ( isBorderBox ? "border" : "content" ), - valueIsBorderBox, - styles, - - // Provide the current computed size to request scroll gutter calculation (gh-3589) - val - ) - ) + "px"; -} - -jQuery.extend( { - - // Add in style property hooks for overriding the default - // behavior of getting and setting a style property - cssHooks: { - opacity: { - get: function( elem, computed ) { - if ( computed ) { - - // We should always get a number back from opacity - var ret = curCSS( elem, "opacity" ); - return ret === "" ? "1" : ret; - } - } - } - }, - - // Don't automatically add "px" to these possibly-unitless properties - cssNumber: { - "animationIterationCount": true, - "columnCount": true, - "fillOpacity": true, - "flexGrow": true, - "flexShrink": true, - "fontWeight": true, - "gridArea": true, - "gridColumn": true, - "gridColumnEnd": true, - "gridColumnStart": true, - "gridRow": true, - "gridRowEnd": true, - "gridRowStart": true, - "lineHeight": true, - "opacity": true, - "order": true, - "orphans": true, - "widows": true, - "zIndex": true, - "zoom": true - }, - - // Add in properties whose names you wish to fix before - // setting or getting the value - cssProps: {}, - - // Get and set the style property on a DOM Node - style: function( elem, name, value, extra ) { - - // Don't set styles on text and comment nodes - if ( !elem || elem.nodeType === 3 || elem.nodeType === 8 || !elem.style ) { - return; - } - - // Make sure that we're working with the right name - var ret, type, hooks, - origName = camelCase( name ), - isCustomProp = rcustomProp.test( name ), - style = elem.style; - - // Make sure that we're working with the right name. We don't - // want to query the value if it is a CSS custom property - // since they are user-defined. - if ( !isCustomProp ) { - name = finalPropName( origName ); - } - - // Gets hook for the prefixed version, then unprefixed version - hooks = jQuery.cssHooks[ name ] || jQuery.cssHooks[ origName ]; - - // Check if we're setting a value - if ( value !== undefined ) { - type = typeof value; - - // Convert "+=" or "-=" to relative numbers (#7345) - if ( type === "string" && ( ret = rcssNum.exec( value ) ) && ret[ 1 ] ) { - value = adjustCSS( elem, name, ret ); - - // Fixes bug #9237 - type = "number"; - } - - // Make sure that null and NaN values aren't set (#7116) - if ( value == null || value !== value ) { - return; - } - - // If a number was passed in, add the unit (except for certain CSS properties) - // The isCustomProp check can be removed in jQuery 4.0 when we only auto-append - // "px" to a few hardcoded values. - if ( type === "number" && !isCustomProp ) { - value += ret && ret[ 3 ] || ( jQuery.cssNumber[ origName ] ? "" : "px" ); - } - - // background-* props affect original clone's values - if ( !support.clearCloneStyle && value === "" && name.indexOf( "background" ) === 0 ) { - style[ name ] = "inherit"; - } - - // If a hook was provided, use that value, otherwise just set the specified value - if ( !hooks || !( "set" in hooks ) || - ( value = hooks.set( elem, value, extra ) ) !== undefined ) { - - if ( isCustomProp ) { - style.setProperty( name, value ); - } else { - style[ name ] = value; - } - } - - } else { - - // If a hook was provided get the non-computed value from there - if ( hooks && "get" in hooks && - ( ret = hooks.get( elem, false, extra ) ) !== undefined ) { - - return ret; - } - - // Otherwise just get the value from the style object - return style[ name ]; - } - }, - - css: function( elem, name, extra, styles ) { - var val, num, hooks, - origName = camelCase( name ), - isCustomProp = rcustomProp.test( name ); - - // Make sure that we're working with the right name. We don't - // want to modify the value if it is a CSS custom property - // since they are user-defined. - if ( !isCustomProp ) { - name = finalPropName( origName ); - } - - // Try prefixed name followed by the unprefixed name - hooks = jQuery.cssHooks[ name ] || jQuery.cssHooks[ origName ]; - - // If a hook was provided get the computed value from there - if ( hooks && "get" in hooks ) { - val = hooks.get( elem, true, extra ); - } - - // Otherwise, if a way to get the computed value exists, use that - if ( val === undefined ) { - val = curCSS( elem, name, styles ); - } - - // Convert "normal" to computed value - if ( val === "normal" && name in cssNormalTransform ) { - val = cssNormalTransform[ name ]; - } - - // Make numeric if forced or a qualifier was provided and val looks numeric - if ( extra === "" || extra ) { - num = parseFloat( val ); - return extra === true || isFinite( num ) ? num || 0 : val; - } - - return val; - } -} ); - -jQuery.each( [ "height", "width" ], function( i, dimension ) { - jQuery.cssHooks[ dimension ] = { - get: function( elem, computed, extra ) { - if ( computed ) { - - // Certain elements can have dimension info if we invisibly show them - // but it must have a current display style that would benefit - return rdisplayswap.test( jQuery.css( elem, "display" ) ) && - - // Support: Safari 8+ - // Table columns in Safari have non-zero offsetWidth & zero - // getBoundingClientRect().width unless display is changed. - // Support: IE <=11 only - // Running getBoundingClientRect on a disconnected node - // in IE throws an error. - ( !elem.getClientRects().length || !elem.getBoundingClientRect().width ) ? - swap( elem, cssShow, function() { - return getWidthOrHeight( elem, dimension, extra ); - } ) : - getWidthOrHeight( elem, dimension, extra ); - } - }, - - set: function( elem, value, extra ) { - var matches, - styles = getStyles( elem ), - - // Only read styles.position if the test has a chance to fail - // to avoid forcing a reflow. - scrollboxSizeBuggy = !support.scrollboxSize() && - styles.position === "absolute", - - // To avoid forcing a reflow, only fetch boxSizing if we need it (gh-3991) - boxSizingNeeded = scrollboxSizeBuggy || extra, - isBorderBox = boxSizingNeeded && - jQuery.css( elem, "boxSizing", false, styles ) === "border-box", - subtract = extra ? - boxModelAdjustment( - elem, - dimension, - extra, - isBorderBox, - styles - ) : - 0; - - // Account for unreliable border-box dimensions by comparing offset* to computed and - // faking a content-box to get border and padding (gh-3699) - if ( isBorderBox && scrollboxSizeBuggy ) { - subtract -= Math.ceil( - elem[ "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ) ] - - parseFloat( styles[ dimension ] ) - - boxModelAdjustment( elem, dimension, "border", false, styles ) - - 0.5 - ); - } - - // Convert to pixels if value adjustment is needed - if ( subtract && ( matches = rcssNum.exec( value ) ) && - ( matches[ 3 ] || "px" ) !== "px" ) { - - elem.style[ dimension ] = value; - value = jQuery.css( elem, dimension ); - } - - return setPositiveNumber( elem, value, subtract ); - } - }; -} ); - -jQuery.cssHooks.marginLeft = addGetHookIf( support.reliableMarginLeft, - function( elem, computed ) { - if ( computed ) { - return ( parseFloat( curCSS( elem, "marginLeft" ) ) || - elem.getBoundingClientRect().left - - swap( elem, { marginLeft: 0 }, function() { - return elem.getBoundingClientRect().left; - } ) - ) + "px"; - } - } -); - -// These hooks are used by animate to expand properties -jQuery.each( { - margin: "", - padding: "", - border: "Width" -}, function( prefix, suffix ) { - jQuery.cssHooks[ prefix + suffix ] = { - expand: function( value ) { - var i = 0, - expanded = {}, - - // Assumes a single number if not a string - parts = typeof value === "string" ? value.split( " " ) : [ value ]; - - for ( ; i < 4; i++ ) { - expanded[ prefix + cssExpand[ i ] + suffix ] = - parts[ i ] || parts[ i - 2 ] || parts[ 0 ]; - } - - return expanded; - } - }; - - if ( prefix !== "margin" ) { - jQuery.cssHooks[ prefix + suffix ].set = setPositiveNumber; - } -} ); - -jQuery.fn.extend( { - css: function( name, value ) { - return access( this, function( elem, name, value ) { - var styles, len, - map = {}, - i = 0; - - if ( Array.isArray( name ) ) { - styles = getStyles( elem ); - len = name.length; - - for ( ; i < len; i++ ) { - map[ name[ i ] ] = jQuery.css( elem, name[ i ], false, styles ); - } - - return map; - } - - return value !== undefined ? - jQuery.style( elem, name, value ) : - jQuery.css( elem, name ); - }, name, value, arguments.length > 1 ); - } -} ); - - -function Tween( elem, options, prop, end, easing ) { - return new Tween.prototype.init( elem, options, prop, end, easing ); -} -jQuery.Tween = Tween; - -Tween.prototype = { - constructor: Tween, - init: function( elem, options, prop, end, easing, unit ) { - this.elem = elem; - this.prop = prop; - this.easing = easing || jQuery.easing._default; - this.options = options; - this.start = this.now = this.cur(); - this.end = end; - this.unit = unit || ( jQuery.cssNumber[ prop ] ? "" : "px" ); - }, - cur: function() { - var hooks = Tween.propHooks[ this.prop ]; - - return hooks && hooks.get ? - hooks.get( this ) : - Tween.propHooks._default.get( this ); - }, - run: function( percent ) { - var eased, - hooks = Tween.propHooks[ this.prop ]; - - if ( this.options.duration ) { - this.pos = eased = jQuery.easing[ this.easing ]( - percent, this.options.duration * percent, 0, 1, this.options.duration - ); - } else { - this.pos = eased = percent; - } - this.now = ( this.end - this.start ) * eased + this.start; - - if ( this.options.step ) { - this.options.step.call( this.elem, this.now, this ); - } - - if ( hooks && hooks.set ) { - hooks.set( this ); - } else { - Tween.propHooks._default.set( this ); - } - return this; - } -}; - -Tween.prototype.init.prototype = Tween.prototype; - -Tween.propHooks = { - _default: { - get: function( tween ) { - var result; - - // Use a property on the element directly when it is not a DOM element, - // or when there is no matching style property that exists. - if ( tween.elem.nodeType !== 1 || - tween.elem[ tween.prop ] != null && tween.elem.style[ tween.prop ] == null ) { - return tween.elem[ tween.prop ]; - } - - // Passing an empty string as a 3rd parameter to .css will automatically - // attempt a parseFloat and fallback to a string if the parse fails. - // Simple values such as "10px" are parsed to Float; - // complex values such as "rotate(1rad)" are returned as-is. - result = jQuery.css( tween.elem, tween.prop, "" ); - - // Empty strings, null, undefined and "auto" are converted to 0. - return !result || result === "auto" ? 0 : result; - }, - set: function( tween ) { - - // Use step hook for back compat. - // Use cssHook if its there. - // Use .style if available and use plain properties where available. - if ( jQuery.fx.step[ tween.prop ] ) { - jQuery.fx.step[ tween.prop ]( tween ); - } else if ( tween.elem.nodeType === 1 && ( - jQuery.cssHooks[ tween.prop ] || - tween.elem.style[ finalPropName( tween.prop ) ] != null ) ) { - jQuery.style( tween.elem, tween.prop, tween.now + tween.unit ); - } else { - tween.elem[ tween.prop ] = tween.now; - } - } - } -}; - -// Support: IE <=9 only -// Panic based approach to setting things on disconnected nodes -Tween.propHooks.scrollTop = Tween.propHooks.scrollLeft = { - set: function( tween ) { - if ( tween.elem.nodeType && tween.elem.parentNode ) { - tween.elem[ tween.prop ] = tween.now; - } - } -}; - -jQuery.easing = { - linear: function( p ) { - return p; - }, - swing: function( p ) { - return 0.5 - Math.cos( p * Math.PI ) / 2; - }, - _default: "swing" -}; - -jQuery.fx = Tween.prototype.init; - -// Back compat <1.8 extension point -jQuery.fx.step = {}; - - - - -var - fxNow, inProgress, - rfxtypes = /^(?:toggle|show|hide)$/, - rrun = /queueHooks$/; - -function schedule() { - if ( inProgress ) { - if ( document.hidden === false && window.requestAnimationFrame ) { - window.requestAnimationFrame( schedule ); - } else { - window.setTimeout( schedule, jQuery.fx.interval ); - } - - jQuery.fx.tick(); - } -} - -// Animations created synchronously will run synchronously -function createFxNow() { - window.setTimeout( function() { - fxNow = undefined; - } ); - return ( fxNow = Date.now() ); -} - -// Generate parameters to create a standard animation -function genFx( type, includeWidth ) { - var which, - i = 0, - attrs = { height: type }; - - // If we include width, step value is 1 to do all cssExpand values, - // otherwise step value is 2 to skip over Left and Right - includeWidth = includeWidth ? 1 : 0; - for ( ; i < 4; i += 2 - includeWidth ) { - which = cssExpand[ i ]; - attrs[ "margin" + which ] = attrs[ "padding" + which ] = type; - } - - if ( includeWidth ) { - attrs.opacity = attrs.width = type; - } - - return attrs; -} - -function createTween( value, prop, animation ) { - var tween, - collection = ( Animation.tweeners[ prop ] || [] ).concat( Animation.tweeners[ "*" ] ), - index = 0, - length = collection.length; - for ( ; index < length; index++ ) { - if ( ( tween = collection[ index ].call( animation, prop, value ) ) ) { - - // We're done with this property - return tween; - } - } -} - -function defaultPrefilter( elem, props, opts ) { - var prop, value, toggle, hooks, oldfire, propTween, restoreDisplay, display, - isBox = "width" in props || "height" in props, - anim = this, - orig = {}, - style = elem.style, - hidden = elem.nodeType && isHiddenWithinTree( elem ), - dataShow = dataPriv.get( elem, "fxshow" ); - - // Queue-skipping animations hijack the fx hooks - if ( !opts.queue ) { - hooks = jQuery._queueHooks( elem, "fx" ); - if ( hooks.unqueued == null ) { - hooks.unqueued = 0; - oldfire = hooks.empty.fire; - hooks.empty.fire = function() { - if ( !hooks.unqueued ) { - oldfire(); - } - }; - } - hooks.unqueued++; - - anim.always( function() { - - // Ensure the complete handler is called before this completes - anim.always( function() { - hooks.unqueued--; - if ( !jQuery.queue( elem, "fx" ).length ) { - hooks.empty.fire(); - } - } ); - } ); - } - - // Detect show/hide animations - for ( prop in props ) { - value = props[ prop ]; - if ( rfxtypes.test( value ) ) { - delete props[ prop ]; - toggle = toggle || value === "toggle"; - if ( value === ( hidden ? "hide" : "show" ) ) { - - // Pretend to be hidden if this is a "show" and - // there is still data from a stopped show/hide - if ( value === "show" && dataShow && dataShow[ prop ] !== undefined ) { - hidden = true; - - // Ignore all other no-op show/hide data - } else { - continue; - } - } - orig[ prop ] = dataShow && dataShow[ prop ] || jQuery.style( elem, prop ); - } - } - - // Bail out if this is a no-op like .hide().hide() - propTween = !jQuery.isEmptyObject( props ); - if ( !propTween && jQuery.isEmptyObject( orig ) ) { - return; - } - - // Restrict "overflow" and "display" styles during box animations - if ( isBox && elem.nodeType === 1 ) { - - // Support: IE <=9 - 11, Edge 12 - 15 - // Record all 3 overflow attributes because IE does not infer the shorthand - // from identically-valued overflowX and overflowY and Edge just mirrors - // the overflowX value there. - opts.overflow = [ style.overflow, style.overflowX, style.overflowY ]; - - // Identify a display type, preferring old show/hide data over the CSS cascade - restoreDisplay = dataShow && dataShow.display; - if ( restoreDisplay == null ) { - restoreDisplay = dataPriv.get( elem, "display" ); - } - display = jQuery.css( elem, "display" ); - if ( display === "none" ) { - if ( restoreDisplay ) { - display = restoreDisplay; - } else { - - // Get nonempty value(s) by temporarily forcing visibility - showHide( [ elem ], true ); - restoreDisplay = elem.style.display || restoreDisplay; - display = jQuery.css( elem, "display" ); - showHide( [ elem ] ); - } - } - - // Animate inline elements as inline-block - if ( display === "inline" || display === "inline-block" && restoreDisplay != null ) { - if ( jQuery.css( elem, "float" ) === "none" ) { - - // Restore the original display value at the end of pure show/hide animations - if ( !propTween ) { - anim.done( function() { - style.display = restoreDisplay; - } ); - if ( restoreDisplay == null ) { - display = style.display; - restoreDisplay = display === "none" ? "" : display; - } - } - style.display = "inline-block"; - } - } - } - - if ( opts.overflow ) { - style.overflow = "hidden"; - anim.always( function() { - style.overflow = opts.overflow[ 0 ]; - style.overflowX = opts.overflow[ 1 ]; - style.overflowY = opts.overflow[ 2 ]; - } ); - } - - // Implement show/hide animations - propTween = false; - for ( prop in orig ) { - - // General show/hide setup for this element animation - if ( !propTween ) { - if ( dataShow ) { - if ( "hidden" in dataShow ) { - hidden = dataShow.hidden; - } - } else { - dataShow = dataPriv.access( elem, "fxshow", { display: restoreDisplay } ); - } - - // Store hidden/visible for toggle so `.stop().toggle()` "reverses" - if ( toggle ) { - dataShow.hidden = !hidden; - } - - // Show elements before animating them - if ( hidden ) { - showHide( [ elem ], true ); - } - - /* eslint-disable no-loop-func */ - - anim.done( function() { - - /* eslint-enable no-loop-func */ - - // The final step of a "hide" animation is actually hiding the element - if ( !hidden ) { - showHide( [ elem ] ); - } - dataPriv.remove( elem, "fxshow" ); - for ( prop in orig ) { - jQuery.style( elem, prop, orig[ prop ] ); - } - } ); - } - - // Per-property setup - propTween = createTween( hidden ? dataShow[ prop ] : 0, prop, anim ); - if ( !( prop in dataShow ) ) { - dataShow[ prop ] = propTween.start; - if ( hidden ) { - propTween.end = propTween.start; - propTween.start = 0; - } - } - } -} - -function propFilter( props, specialEasing ) { - var index, name, easing, value, hooks; - - // camelCase, specialEasing and expand cssHook pass - for ( index in props ) { - name = camelCase( index ); - easing = specialEasing[ name ]; - value = props[ index ]; - if ( Array.isArray( value ) ) { - easing = value[ 1 ]; - value = props[ index ] = value[ 0 ]; - } - - if ( index !== name ) { - props[ name ] = value; - delete props[ index ]; - } - - hooks = jQuery.cssHooks[ name ]; - if ( hooks && "expand" in hooks ) { - value = hooks.expand( value ); - delete props[ name ]; - - // Not quite $.extend, this won't overwrite existing keys. - // Reusing 'index' because we have the correct "name" - for ( index in value ) { - if ( !( index in props ) ) { - props[ index ] = value[ index ]; - specialEasing[ index ] = easing; - } - } - } else { - specialEasing[ name ] = easing; - } - } -} - -function Animation( elem, properties, options ) { - var result, - stopped, - index = 0, - length = Animation.prefilters.length, - deferred = jQuery.Deferred().always( function() { - - // Don't match elem in the :animated selector - delete tick.elem; - } ), - tick = function() { - if ( stopped ) { - return false; - } - var currentTime = fxNow || createFxNow(), - remaining = Math.max( 0, animation.startTime + animation.duration - currentTime ), - - // Support: Android 2.3 only - // Archaic crash bug won't allow us to use `1 - ( 0.5 || 0 )` (#12497) - temp = remaining / animation.duration || 0, - percent = 1 - temp, - index = 0, - length = animation.tweens.length; - - for ( ; index < length; index++ ) { - animation.tweens[ index ].run( percent ); - } - - deferred.notifyWith( elem, [ animation, percent, remaining ] ); - - // If there's more to do, yield - if ( percent < 1 && length ) { - return remaining; - } - - // If this was an empty animation, synthesize a final progress notification - if ( !length ) { - deferred.notifyWith( elem, [ animation, 1, 0 ] ); - } - - // Resolve the animation and report its conclusion - deferred.resolveWith( elem, [ animation ] ); - return false; - }, - animation = deferred.promise( { - elem: elem, - props: jQuery.extend( {}, properties ), - opts: jQuery.extend( true, { - specialEasing: {}, - easing: jQuery.easing._default - }, options ), - originalProperties: properties, - originalOptions: options, - startTime: fxNow || createFxNow(), - duration: options.duration, - tweens: [], - createTween: function( prop, end ) { - var tween = jQuery.Tween( elem, animation.opts, prop, end, - animation.opts.specialEasing[ prop ] || animation.opts.easing ); - animation.tweens.push( tween ); - return tween; - }, - stop: function( gotoEnd ) { - var index = 0, - - // If we are going to the end, we want to run all the tweens - // otherwise we skip this part - length = gotoEnd ? animation.tweens.length : 0; - if ( stopped ) { - return this; - } - stopped = true; - for ( ; index < length; index++ ) { - animation.tweens[ index ].run( 1 ); - } - - // Resolve when we played the last frame; otherwise, reject - if ( gotoEnd ) { - deferred.notifyWith( elem, [ animation, 1, 0 ] ); - deferred.resolveWith( elem, [ animation, gotoEnd ] ); - } else { - deferred.rejectWith( elem, [ animation, gotoEnd ] ); - } - return this; - } - } ), - props = animation.props; - - propFilter( props, animation.opts.specialEasing ); - - for ( ; index < length; index++ ) { - result = Animation.prefilters[ index ].call( animation, elem, props, animation.opts ); - if ( result ) { - if ( isFunction( result.stop ) ) { - jQuery._queueHooks( animation.elem, animation.opts.queue ).stop = - result.stop.bind( result ); - } - return result; - } - } - - jQuery.map( props, createTween, animation ); - - if ( isFunction( animation.opts.start ) ) { - animation.opts.start.call( elem, animation ); - } - - // Attach callbacks from options - animation - .progress( animation.opts.progress ) - .done( animation.opts.done, animation.opts.complete ) - .fail( animation.opts.fail ) - .always( animation.opts.always ); - - jQuery.fx.timer( - jQuery.extend( tick, { - elem: elem, - anim: animation, - queue: animation.opts.queue - } ) - ); - - return animation; -} - -jQuery.Animation = jQuery.extend( Animation, { - - tweeners: { - "*": [ function( prop, value ) { - var tween = this.createTween( prop, value ); - adjustCSS( tween.elem, prop, rcssNum.exec( value ), tween ); - return tween; - } ] - }, - - tweener: function( props, callback ) { - if ( isFunction( props ) ) { - callback = props; - props = [ "*" ]; - } else { - props = props.match( rnothtmlwhite ); - } - - var prop, - index = 0, - length = props.length; - - for ( ; index < length; index++ ) { - prop = props[ index ]; - Animation.tweeners[ prop ] = Animation.tweeners[ prop ] || []; - Animation.tweeners[ prop ].unshift( callback ); - } - }, - - prefilters: [ defaultPrefilter ], - - prefilter: function( callback, prepend ) { - if ( prepend ) { - Animation.prefilters.unshift( callback ); - } else { - Animation.prefilters.push( callback ); - } - } -} ); - -jQuery.speed = function( speed, easing, fn ) { - var opt = speed && typeof speed === "object" ? jQuery.extend( {}, speed ) : { - complete: fn || !fn && easing || - isFunction( speed ) && speed, - duration: speed, - easing: fn && easing || easing && !isFunction( easing ) && easing - }; - - // Go to the end state if fx are off - if ( jQuery.fx.off ) { - opt.duration = 0; - - } else { - if ( typeof opt.duration !== "number" ) { - if ( opt.duration in jQuery.fx.speeds ) { - opt.duration = jQuery.fx.speeds[ opt.duration ]; - - } else { - opt.duration = jQuery.fx.speeds._default; - } - } - } - - // Normalize opt.queue - true/undefined/null -> "fx" - if ( opt.queue == null || opt.queue === true ) { - opt.queue = "fx"; - } - - // Queueing - opt.old = opt.complete; - - opt.complete = function() { - if ( isFunction( opt.old ) ) { - opt.old.call( this ); - } - - if ( opt.queue ) { - jQuery.dequeue( this, opt.queue ); - } - }; - - return opt; -}; - -jQuery.fn.extend( { - fadeTo: function( speed, to, easing, callback ) { - - // Show any hidden elements after setting opacity to 0 - return this.filter( isHiddenWithinTree ).css( "opacity", 0 ).show() - - // Animate to the value specified - .end().animate( { opacity: to }, speed, easing, callback ); - }, - animate: function( prop, speed, easing, callback ) { - var empty = jQuery.isEmptyObject( prop ), - optall = jQuery.speed( speed, easing, callback ), - doAnimation = function() { - - // Operate on a copy of prop so per-property easing won't be lost - var anim = Animation( this, jQuery.extend( {}, prop ), optall ); - - // Empty animations, or finishing resolves immediately - if ( empty || dataPriv.get( this, "finish" ) ) { - anim.stop( true ); - } - }; - doAnimation.finish = doAnimation; - - return empty || optall.queue === false ? - this.each( doAnimation ) : - this.queue( optall.queue, doAnimation ); - }, - stop: function( type, clearQueue, gotoEnd ) { - var stopQueue = function( hooks ) { - var stop = hooks.stop; - delete hooks.stop; - stop( gotoEnd ); - }; - - if ( typeof type !== "string" ) { - gotoEnd = clearQueue; - clearQueue = type; - type = undefined; - } - if ( clearQueue && type !== false ) { - this.queue( type || "fx", [] ); - } - - return this.each( function() { - var dequeue = true, - index = type != null && type + "queueHooks", - timers = jQuery.timers, - data = dataPriv.get( this ); - - if ( index ) { - if ( data[ index ] && data[ index ].stop ) { - stopQueue( data[ index ] ); - } - } else { - for ( index in data ) { - if ( data[ index ] && data[ index ].stop && rrun.test( index ) ) { - stopQueue( data[ index ] ); - } - } - } - - for ( index = timers.length; index--; ) { - if ( timers[ index ].elem === this && - ( type == null || timers[ index ].queue === type ) ) { - - timers[ index ].anim.stop( gotoEnd ); - dequeue = false; - timers.splice( index, 1 ); - } - } - - // Start the next in the queue if the last step wasn't forced. - // Timers currently will call their complete callbacks, which - // will dequeue but only if they were gotoEnd. - if ( dequeue || !gotoEnd ) { - jQuery.dequeue( this, type ); - } - } ); - }, - finish: function( type ) { - if ( type !== false ) { - type = type || "fx"; - } - return this.each( function() { - var index, - data = dataPriv.get( this ), - queue = data[ type + "queue" ], - hooks = data[ type + "queueHooks" ], - timers = jQuery.timers, - length = queue ? queue.length : 0; - - // Enable finishing flag on private data - data.finish = true; - - // Empty the queue first - jQuery.queue( this, type, [] ); - - if ( hooks && hooks.stop ) { - hooks.stop.call( this, true ); - } - - // Look for any active animations, and finish them - for ( index = timers.length; index--; ) { - if ( timers[ index ].elem === this && timers[ index ].queue === type ) { - timers[ index ].anim.stop( true ); - timers.splice( index, 1 ); - } - } - - // Look for any animations in the old queue and finish them - for ( index = 0; index < length; index++ ) { - if ( queue[ index ] && queue[ index ].finish ) { - queue[ index ].finish.call( this ); - } - } - - // Turn off finishing flag - delete data.finish; - } ); - } -} ); - -jQuery.each( [ "toggle", "show", "hide" ], function( i, name ) { - var cssFn = jQuery.fn[ name ]; - jQuery.fn[ name ] = function( speed, easing, callback ) { - return speed == null || typeof speed === "boolean" ? - cssFn.apply( this, arguments ) : - this.animate( genFx( name, true ), speed, easing, callback ); - }; -} ); - -// Generate shortcuts for custom animations -jQuery.each( { - slideDown: genFx( "show" ), - slideUp: genFx( "hide" ), - slideToggle: genFx( "toggle" ), - fadeIn: { opacity: "show" }, - fadeOut: { opacity: "hide" }, - fadeToggle: { opacity: "toggle" } -}, function( name, props ) { - jQuery.fn[ name ] = function( speed, easing, callback ) { - return this.animate( props, speed, easing, callback ); - }; -} ); - -jQuery.timers = []; -jQuery.fx.tick = function() { - var timer, - i = 0, - timers = jQuery.timers; - - fxNow = Date.now(); - - for ( ; i < timers.length; i++ ) { - timer = timers[ i ]; - - // Run the timer and safely remove it when done (allowing for external removal) - if ( !timer() && timers[ i ] === timer ) { - timers.splice( i--, 1 ); - } - } - - if ( !timers.length ) { - jQuery.fx.stop(); - } - fxNow = undefined; -}; - -jQuery.fx.timer = function( timer ) { - jQuery.timers.push( timer ); - jQuery.fx.start(); -}; - -jQuery.fx.interval = 13; -jQuery.fx.start = function() { - if ( inProgress ) { - return; - } - - inProgress = true; - schedule(); -}; - -jQuery.fx.stop = function() { - inProgress = null; -}; - -jQuery.fx.speeds = { - slow: 600, - fast: 200, - - // Default speed - _default: 400 -}; - - -// Based off of the plugin by Clint Helfers, with permission. -// https://web.archive.org/web/20100324014747/http://blindsignals.com/index.php/2009/07/jquery-delay/ -jQuery.fn.delay = function( time, type ) { - time = jQuery.fx ? jQuery.fx.speeds[ time ] || time : time; - type = type || "fx"; - - return this.queue( type, function( next, hooks ) { - var timeout = window.setTimeout( next, time ); - hooks.stop = function() { - window.clearTimeout( timeout ); - }; - } ); -}; - - -( function() { - var input = document.createElement( "input" ), - select = document.createElement( "select" ), - opt = select.appendChild( document.createElement( "option" ) ); - - input.type = "checkbox"; - - // Support: Android <=4.3 only - // Default value for a checkbox should be "on" - support.checkOn = input.value !== ""; - - // Support: IE <=11 only - // Must access selectedIndex to make default options select - support.optSelected = opt.selected; - - // Support: IE <=11 only - // An input loses its value after becoming a radio - input = document.createElement( "input" ); - input.value = "t"; - input.type = "radio"; - support.radioValue = input.value === "t"; -} )(); - - -var boolHook, - attrHandle = jQuery.expr.attrHandle; - -jQuery.fn.extend( { - attr: function( name, value ) { - return access( this, jQuery.attr, name, value, arguments.length > 1 ); - }, - - removeAttr: function( name ) { - return this.each( function() { - jQuery.removeAttr( this, name ); - } ); - } -} ); - -jQuery.extend( { - attr: function( elem, name, value ) { - var ret, hooks, - nType = elem.nodeType; - - // Don't get/set attributes on text, comment and attribute nodes - if ( nType === 3 || nType === 8 || nType === 2 ) { - return; - } - - // Fallback to prop when attributes are not supported - if ( typeof elem.getAttribute === "undefined" ) { - return jQuery.prop( elem, name, value ); - } - - // Attribute hooks are determined by the lowercase version - // Grab necessary hook if one is defined - if ( nType !== 1 || !jQuery.isXMLDoc( elem ) ) { - hooks = jQuery.attrHooks[ name.toLowerCase() ] || - ( jQuery.expr.match.bool.test( name ) ? boolHook : undefined ); - } - - if ( value !== undefined ) { - if ( value === null ) { - jQuery.removeAttr( elem, name ); - return; - } - - if ( hooks && "set" in hooks && - ( ret = hooks.set( elem, value, name ) ) !== undefined ) { - return ret; - } - - elem.setAttribute( name, value + "" ); - return value; - } - - if ( hooks && "get" in hooks && ( ret = hooks.get( elem, name ) ) !== null ) { - return ret; - } - - ret = jQuery.find.attr( elem, name ); - - // Non-existent attributes return null, we normalize to undefined - return ret == null ? undefined : ret; - }, - - attrHooks: { - type: { - set: function( elem, value ) { - if ( !support.radioValue && value === "radio" && - nodeName( elem, "input" ) ) { - var val = elem.value; - elem.setAttribute( "type", value ); - if ( val ) { - elem.value = val; - } - return value; - } - } - } - }, - - removeAttr: function( elem, value ) { - var name, - i = 0, - - // Attribute names can contain non-HTML whitespace characters - // https://html.spec.whatwg.org/multipage/syntax.html#attributes-2 - attrNames = value && value.match( rnothtmlwhite ); - - if ( attrNames && elem.nodeType === 1 ) { - while ( ( name = attrNames[ i++ ] ) ) { - elem.removeAttribute( name ); - } - } - } -} ); - -// Hooks for boolean attributes -boolHook = { - set: function( elem, value, name ) { - if ( value === false ) { - - // Remove boolean attributes when set to false - jQuery.removeAttr( elem, name ); - } else { - elem.setAttribute( name, name ); - } - return name; - } -}; - -jQuery.each( jQuery.expr.match.bool.source.match( /\w+/g ), function( i, name ) { - var getter = attrHandle[ name ] || jQuery.find.attr; - - attrHandle[ name ] = function( elem, name, isXML ) { - var ret, handle, - lowercaseName = name.toLowerCase(); - - if ( !isXML ) { - - // Avoid an infinite loop by temporarily removing this function from the getter - handle = attrHandle[ lowercaseName ]; - attrHandle[ lowercaseName ] = ret; - ret = getter( elem, name, isXML ) != null ? - lowercaseName : - null; - attrHandle[ lowercaseName ] = handle; - } - return ret; - }; -} ); - - - - -var rfocusable = /^(?:input|select|textarea|button)$/i, - rclickable = /^(?:a|area)$/i; - -jQuery.fn.extend( { - prop: function( name, value ) { - return access( this, jQuery.prop, name, value, arguments.length > 1 ); - }, - - removeProp: function( name ) { - return this.each( function() { - delete this[ jQuery.propFix[ name ] || name ]; - } ); - } -} ); - -jQuery.extend( { - prop: function( elem, name, value ) { - var ret, hooks, - nType = elem.nodeType; - - // Don't get/set properties on text, comment and attribute nodes - if ( nType === 3 || nType === 8 || nType === 2 ) { - return; - } - - if ( nType !== 1 || !jQuery.isXMLDoc( elem ) ) { - - // Fix name and attach hooks - name = jQuery.propFix[ name ] || name; - hooks = jQuery.propHooks[ name ]; - } - - if ( value !== undefined ) { - if ( hooks && "set" in hooks && - ( ret = hooks.set( elem, value, name ) ) !== undefined ) { - return ret; - } - - return ( elem[ name ] = value ); - } - - if ( hooks && "get" in hooks && ( ret = hooks.get( elem, name ) ) !== null ) { - return ret; - } - - return elem[ name ]; - }, - - propHooks: { - tabIndex: { - get: function( elem ) { - - // Support: IE <=9 - 11 only - // elem.tabIndex doesn't always return the - // correct value when it hasn't been explicitly set - // https://web.archive.org/web/20141116233347/http://fluidproject.org/blog/2008/01/09/getting-setting-and-removing-tabindex-values-with-javascript/ - // Use proper attribute retrieval(#12072) - var tabindex = jQuery.find.attr( elem, "tabindex" ); - - if ( tabindex ) { - return parseInt( tabindex, 10 ); - } - - if ( - rfocusable.test( elem.nodeName ) || - rclickable.test( elem.nodeName ) && - elem.href - ) { - return 0; - } - - return -1; - } - } - }, - - propFix: { - "for": "htmlFor", - "class": "className" - } -} ); - -// Support: IE <=11 only -// Accessing the selectedIndex property -// forces the browser to respect setting selected -// on the option -// The getter ensures a default option is selected -// when in an optgroup -// eslint rule "no-unused-expressions" is disabled for this code -// since it considers such accessions noop -if ( !support.optSelected ) { - jQuery.propHooks.selected = { - get: function( elem ) { - - /* eslint no-unused-expressions: "off" */ - - var parent = elem.parentNode; - if ( parent && parent.parentNode ) { - parent.parentNode.selectedIndex; - } - return null; - }, - set: function( elem ) { - - /* eslint no-unused-expressions: "off" */ - - var parent = elem.parentNode; - if ( parent ) { - parent.selectedIndex; - - if ( parent.parentNode ) { - parent.parentNode.selectedIndex; - } - } - } - }; -} - -jQuery.each( [ - "tabIndex", - "readOnly", - "maxLength", - "cellSpacing", - "cellPadding", - "rowSpan", - "colSpan", - "useMap", - "frameBorder", - "contentEditable" -], function() { - jQuery.propFix[ this.toLowerCase() ] = this; -} ); - - - - - // Strip and collapse whitespace according to HTML spec - // https://infra.spec.whatwg.org/#strip-and-collapse-ascii-whitespace - function stripAndCollapse( value ) { - var tokens = value.match( rnothtmlwhite ) || []; - return tokens.join( " " ); - } - - -function getClass( elem ) { - return elem.getAttribute && elem.getAttribute( "class" ) || ""; -} - -function classesToArray( value ) { - if ( Array.isArray( value ) ) { - return value; - } - if ( typeof value === "string" ) { - return value.match( rnothtmlwhite ) || []; - } - return []; -} - -jQuery.fn.extend( { - addClass: function( value ) { - var classes, elem, cur, curValue, clazz, j, finalValue, - i = 0; - - if ( isFunction( value ) ) { - return this.each( function( j ) { - jQuery( this ).addClass( value.call( this, j, getClass( this ) ) ); - } ); - } - - classes = classesToArray( value ); - - if ( classes.length ) { - while ( ( elem = this[ i++ ] ) ) { - curValue = getClass( elem ); - cur = elem.nodeType === 1 && ( " " + stripAndCollapse( curValue ) + " " ); - - if ( cur ) { - j = 0; - while ( ( clazz = classes[ j++ ] ) ) { - if ( cur.indexOf( " " + clazz + " " ) < 0 ) { - cur += clazz + " "; - } - } - - // Only assign if different to avoid unneeded rendering. - finalValue = stripAndCollapse( cur ); - if ( curValue !== finalValue ) { - elem.setAttribute( "class", finalValue ); - } - } - } - } - - return this; - }, - - removeClass: function( value ) { - var classes, elem, cur, curValue, clazz, j, finalValue, - i = 0; - - if ( isFunction( value ) ) { - return this.each( function( j ) { - jQuery( this ).removeClass( value.call( this, j, getClass( this ) ) ); - } ); - } - - if ( !arguments.length ) { - return this.attr( "class", "" ); - } - - classes = classesToArray( value ); - - if ( classes.length ) { - while ( ( elem = this[ i++ ] ) ) { - curValue = getClass( elem ); - - // This expression is here for better compressibility (see addClass) - cur = elem.nodeType === 1 && ( " " + stripAndCollapse( curValue ) + " " ); - - if ( cur ) { - j = 0; - while ( ( clazz = classes[ j++ ] ) ) { - - // Remove *all* instances - while ( cur.indexOf( " " + clazz + " " ) > -1 ) { - cur = cur.replace( " " + clazz + " ", " " ); - } - } - - // Only assign if different to avoid unneeded rendering. - finalValue = stripAndCollapse( cur ); - if ( curValue !== finalValue ) { - elem.setAttribute( "class", finalValue ); - } - } - } - } - - return this; - }, - - toggleClass: function( value, stateVal ) { - var type = typeof value, - isValidValue = type === "string" || Array.isArray( value ); - - if ( typeof stateVal === "boolean" && isValidValue ) { - return stateVal ? this.addClass( value ) : this.removeClass( value ); - } - - if ( isFunction( value ) ) { - return this.each( function( i ) { - jQuery( this ).toggleClass( - value.call( this, i, getClass( this ), stateVal ), - stateVal - ); - } ); - } - - return this.each( function() { - var className, i, self, classNames; - - if ( isValidValue ) { - - // Toggle individual class names - i = 0; - self = jQuery( this ); - classNames = classesToArray( value ); - - while ( ( className = classNames[ i++ ] ) ) { - - // Check each className given, space separated list - if ( self.hasClass( className ) ) { - self.removeClass( className ); - } else { - self.addClass( className ); - } - } - - // Toggle whole class name - } else if ( value === undefined || type === "boolean" ) { - className = getClass( this ); - if ( className ) { - - // Store className if set - dataPriv.set( this, "__className__", className ); - } - - // If the element has a class name or if we're passed `false`, - // then remove the whole classname (if there was one, the above saved it). - // Otherwise bring back whatever was previously saved (if anything), - // falling back to the empty string if nothing was stored. - if ( this.setAttribute ) { - this.setAttribute( "class", - className || value === false ? - "" : - dataPriv.get( this, "__className__" ) || "" - ); - } - } - } ); - }, - - hasClass: function( selector ) { - var className, elem, - i = 0; - - className = " " + selector + " "; - while ( ( elem = this[ i++ ] ) ) { - if ( elem.nodeType === 1 && - ( " " + stripAndCollapse( getClass( elem ) ) + " " ).indexOf( className ) > -1 ) { - return true; - } - } - - return false; - } -} ); - - - - -var rreturn = /\r/g; - -jQuery.fn.extend( { - val: function( value ) { - var hooks, ret, valueIsFunction, - elem = this[ 0 ]; - - if ( !arguments.length ) { - if ( elem ) { - hooks = jQuery.valHooks[ elem.type ] || - jQuery.valHooks[ elem.nodeName.toLowerCase() ]; - - if ( hooks && - "get" in hooks && - ( ret = hooks.get( elem, "value" ) ) !== undefined - ) { - return ret; - } - - ret = elem.value; - - // Handle most common string cases - if ( typeof ret === "string" ) { - return ret.replace( rreturn, "" ); - } - - // Handle cases where value is null/undef or number - return ret == null ? "" : ret; - } - - return; - } - - valueIsFunction = isFunction( value ); - - return this.each( function( i ) { - var val; - - if ( this.nodeType !== 1 ) { - return; - } - - if ( valueIsFunction ) { - val = value.call( this, i, jQuery( this ).val() ); - } else { - val = value; - } - - // Treat null/undefined as ""; convert numbers to string - if ( val == null ) { - val = ""; - - } else if ( typeof val === "number" ) { - val += ""; - - } else if ( Array.isArray( val ) ) { - val = jQuery.map( val, function( value ) { - return value == null ? "" : value + ""; - } ); - } - - hooks = jQuery.valHooks[ this.type ] || jQuery.valHooks[ this.nodeName.toLowerCase() ]; - - // If set returns undefined, fall back to normal setting - if ( !hooks || !( "set" in hooks ) || hooks.set( this, val, "value" ) === undefined ) { - this.value = val; - } - } ); - } -} ); - -jQuery.extend( { - valHooks: { - option: { - get: function( elem ) { - - var val = jQuery.find.attr( elem, "value" ); - return val != null ? - val : - - // Support: IE <=10 - 11 only - // option.text throws exceptions (#14686, #14858) - // Strip and collapse whitespace - // https://html.spec.whatwg.org/#strip-and-collapse-whitespace - stripAndCollapse( jQuery.text( elem ) ); - } - }, - select: { - get: function( elem ) { - var value, option, i, - options = elem.options, - index = elem.selectedIndex, - one = elem.type === "select-one", - values = one ? null : [], - max = one ? index + 1 : options.length; - - if ( index < 0 ) { - i = max; - - } else { - i = one ? index : 0; - } - - // Loop through all the selected options - for ( ; i < max; i++ ) { - option = options[ i ]; - - // Support: IE <=9 only - // IE8-9 doesn't update selected after form reset (#2551) - if ( ( option.selected || i === index ) && - - // Don't return options that are disabled or in a disabled optgroup - !option.disabled && - ( !option.parentNode.disabled || - !nodeName( option.parentNode, "optgroup" ) ) ) { - - // Get the specific value for the option - value = jQuery( option ).val(); - - // We don't need an array for one selects - if ( one ) { - return value; - } - - // Multi-Selects return an array - values.push( value ); - } - } - - return values; - }, - - set: function( elem, value ) { - var optionSet, option, - options = elem.options, - values = jQuery.makeArray( value ), - i = options.length; - - while ( i-- ) { - option = options[ i ]; - - /* eslint-disable no-cond-assign */ - - if ( option.selected = - jQuery.inArray( jQuery.valHooks.option.get( option ), values ) > -1 - ) { - optionSet = true; - } - - /* eslint-enable no-cond-assign */ - } - - // Force browsers to behave consistently when non-matching value is set - if ( !optionSet ) { - elem.selectedIndex = -1; - } - return values; - } - } - } -} ); - -// Radios and checkboxes getter/setter -jQuery.each( [ "radio", "checkbox" ], function() { - jQuery.valHooks[ this ] = { - set: function( elem, value ) { - if ( Array.isArray( value ) ) { - return ( elem.checked = jQuery.inArray( jQuery( elem ).val(), value ) > -1 ); - } - } - }; - if ( !support.checkOn ) { - jQuery.valHooks[ this ].get = function( elem ) { - return elem.getAttribute( "value" ) === null ? "on" : elem.value; - }; - } -} ); - - - - -// Return jQuery for attributes-only inclusion - - -support.focusin = "onfocusin" in window; - - -var rfocusMorph = /^(?:focusinfocus|focusoutblur)$/, - stopPropagationCallback = function( e ) { - e.stopPropagation(); - }; - -jQuery.extend( jQuery.event, { - - trigger: function( event, data, elem, onlyHandlers ) { - - var i, cur, tmp, bubbleType, ontype, handle, special, lastElement, - eventPath = [ elem || document ], - type = hasOwn.call( event, "type" ) ? event.type : event, - namespaces = hasOwn.call( event, "namespace" ) ? event.namespace.split( "." ) : []; - - cur = lastElement = tmp = elem = elem || document; - - // Don't do events on text and comment nodes - if ( elem.nodeType === 3 || elem.nodeType === 8 ) { - return; - } - - // focus/blur morphs to focusin/out; ensure we're not firing them right now - if ( rfocusMorph.test( type + jQuery.event.triggered ) ) { - return; - } - - if ( type.indexOf( "." ) > -1 ) { - - // Namespaced trigger; create a regexp to match event type in handle() - namespaces = type.split( "." ); - type = namespaces.shift(); - namespaces.sort(); - } - ontype = type.indexOf( ":" ) < 0 && "on" + type; - - // Caller can pass in a jQuery.Event object, Object, or just an event type string - event = event[ jQuery.expando ] ? - event : - new jQuery.Event( type, typeof event === "object" && event ); - - // Trigger bitmask: & 1 for native handlers; & 2 for jQuery (always true) - event.isTrigger = onlyHandlers ? 2 : 3; - event.namespace = namespaces.join( "." ); - event.rnamespace = event.namespace ? - new RegExp( "(^|\\.)" + namespaces.join( "\\.(?:.*\\.|)" ) + "(\\.|$)" ) : - null; - - // Clean up the event in case it is being reused - event.result = undefined; - if ( !event.target ) { - event.target = elem; - } - - // Clone any incoming data and prepend the event, creating the handler arg list - data = data == null ? - [ event ] : - jQuery.makeArray( data, [ event ] ); - - // Allow special events to draw outside the lines - special = jQuery.event.special[ type ] || {}; - if ( !onlyHandlers && special.trigger && special.trigger.apply( elem, data ) === false ) { - return; - } - - // Determine event propagation path in advance, per W3C events spec (#9951) - // Bubble up to document, then to window; watch for a global ownerDocument var (#9724) - if ( !onlyHandlers && !special.noBubble && !isWindow( elem ) ) { - - bubbleType = special.delegateType || type; - if ( !rfocusMorph.test( bubbleType + type ) ) { - cur = cur.parentNode; - } - for ( ; cur; cur = cur.parentNode ) { - eventPath.push( cur ); - tmp = cur; - } - - // Only add window if we got to document (e.g., not plain obj or detached DOM) - if ( tmp === ( elem.ownerDocument || document ) ) { - eventPath.push( tmp.defaultView || tmp.parentWindow || window ); - } - } - - // Fire handlers on the event path - i = 0; - while ( ( cur = eventPath[ i++ ] ) && !event.isPropagationStopped() ) { - lastElement = cur; - event.type = i > 1 ? - bubbleType : - special.bindType || type; - - // jQuery handler - handle = ( dataPriv.get( cur, "events" ) || {} )[ event.type ] && - dataPriv.get( cur, "handle" ); - if ( handle ) { - handle.apply( cur, data ); - } - - // Native handler - handle = ontype && cur[ ontype ]; - if ( handle && handle.apply && acceptData( cur ) ) { - event.result = handle.apply( cur, data ); - if ( event.result === false ) { - event.preventDefault(); - } - } - } - event.type = type; - - // If nobody prevented the default action, do it now - if ( !onlyHandlers && !event.isDefaultPrevented() ) { - - if ( ( !special._default || - special._default.apply( eventPath.pop(), data ) === false ) && - acceptData( elem ) ) { - - // Call a native DOM method on the target with the same name as the event. - // Don't do default actions on window, that's where global variables be (#6170) - if ( ontype && isFunction( elem[ type ] ) && !isWindow( elem ) ) { - - // Don't re-trigger an onFOO event when we call its FOO() method - tmp = elem[ ontype ]; - - if ( tmp ) { - elem[ ontype ] = null; - } - - // Prevent re-triggering of the same event, since we already bubbled it above - jQuery.event.triggered = type; - - if ( event.isPropagationStopped() ) { - lastElement.addEventListener( type, stopPropagationCallback ); - } - - elem[ type ](); - - if ( event.isPropagationStopped() ) { - lastElement.removeEventListener( type, stopPropagationCallback ); - } - - jQuery.event.triggered = undefined; - - if ( tmp ) { - elem[ ontype ] = tmp; - } - } - } - } - - return event.result; - }, - - // Piggyback on a donor event to simulate a different one - // Used only for `focus(in | out)` events - simulate: function( type, elem, event ) { - var e = jQuery.extend( - new jQuery.Event(), - event, - { - type: type, - isSimulated: true - } - ); - - jQuery.event.trigger( e, null, elem ); - } - -} ); - -jQuery.fn.extend( { - - trigger: function( type, data ) { - return this.each( function() { - jQuery.event.trigger( type, data, this ); - } ); - }, - triggerHandler: function( type, data ) { - var elem = this[ 0 ]; - if ( elem ) { - return jQuery.event.trigger( type, data, elem, true ); - } - } -} ); - - -// Support: Firefox <=44 -// Firefox doesn't have focus(in | out) events -// Related ticket - https://bugzilla.mozilla.org/show_bug.cgi?id=687787 -// -// Support: Chrome <=48 - 49, Safari <=9.0 - 9.1 -// focus(in | out) events fire after focus & blur events, -// which is spec violation - http://www.w3.org/TR/DOM-Level-3-Events/#events-focusevent-event-order -// Related ticket - https://bugs.chromium.org/p/chromium/issues/detail?id=449857 -if ( !support.focusin ) { - jQuery.each( { focus: "focusin", blur: "focusout" }, function( orig, fix ) { - - // Attach a single capturing handler on the document while someone wants focusin/focusout - var handler = function( event ) { - jQuery.event.simulate( fix, event.target, jQuery.event.fix( event ) ); - }; - - jQuery.event.special[ fix ] = { - setup: function() { - var doc = this.ownerDocument || this, - attaches = dataPriv.access( doc, fix ); - - if ( !attaches ) { - doc.addEventListener( orig, handler, true ); - } - dataPriv.access( doc, fix, ( attaches || 0 ) + 1 ); - }, - teardown: function() { - var doc = this.ownerDocument || this, - attaches = dataPriv.access( doc, fix ) - 1; - - if ( !attaches ) { - doc.removeEventListener( orig, handler, true ); - dataPriv.remove( doc, fix ); - - } else { - dataPriv.access( doc, fix, attaches ); - } - } - }; - } ); -} -var location = window.location; - -var nonce = Date.now(); - -var rquery = ( /\?/ ); - - - -// Cross-browser xml parsing -jQuery.parseXML = function( data ) { - var xml; - if ( !data || typeof data !== "string" ) { - return null; - } - - // Support: IE 9 - 11 only - // IE throws on parseFromString with invalid input. - try { - xml = ( new window.DOMParser() ).parseFromString( data, "text/xml" ); - } catch ( e ) { - xml = undefined; - } - - if ( !xml || xml.getElementsByTagName( "parsererror" ).length ) { - jQuery.error( "Invalid XML: " + data ); - } - return xml; -}; - - -var - rbracket = /\[\]$/, - rCRLF = /\r?\n/g, - rsubmitterTypes = /^(?:submit|button|image|reset|file)$/i, - rsubmittable = /^(?:input|select|textarea|keygen)/i; - -function buildParams( prefix, obj, traditional, add ) { - var name; - - if ( Array.isArray( obj ) ) { - - // Serialize array item. - jQuery.each( obj, function( i, v ) { - if ( traditional || rbracket.test( prefix ) ) { - - // Treat each array item as a scalar. - add( prefix, v ); - - } else { - - // Item is non-scalar (array or object), encode its numeric index. - buildParams( - prefix + "[" + ( typeof v === "object" && v != null ? i : "" ) + "]", - v, - traditional, - add - ); - } - } ); - - } else if ( !traditional && toType( obj ) === "object" ) { - - // Serialize object item. - for ( name in obj ) { - buildParams( prefix + "[" + name + "]", obj[ name ], traditional, add ); - } - - } else { - - // Serialize scalar item. - add( prefix, obj ); - } -} - -// Serialize an array of form elements or a set of -// key/values into a query string -jQuery.param = function( a, traditional ) { - var prefix, - s = [], - add = function( key, valueOrFunction ) { - - // If value is a function, invoke it and use its return value - var value = isFunction( valueOrFunction ) ? - valueOrFunction() : - valueOrFunction; - - s[ s.length ] = encodeURIComponent( key ) + "=" + - encodeURIComponent( value == null ? "" : value ); - }; - - if ( a == null ) { - return ""; - } - - // If an array was passed in, assume that it is an array of form elements. - if ( Array.isArray( a ) || ( a.jquery && !jQuery.isPlainObject( a ) ) ) { - - // Serialize the form elements - jQuery.each( a, function() { - add( this.name, this.value ); - } ); - - } else { - - // If traditional, encode the "old" way (the way 1.3.2 or older - // did it), otherwise encode params recursively. - for ( prefix in a ) { - buildParams( prefix, a[ prefix ], traditional, add ); - } - } - - // Return the resulting serialization - return s.join( "&" ); -}; - -jQuery.fn.extend( { - serialize: function() { - return jQuery.param( this.serializeArray() ); - }, - serializeArray: function() { - return this.map( function() { - - // Can add propHook for "elements" to filter or add form elements - var elements = jQuery.prop( this, "elements" ); - return elements ? jQuery.makeArray( elements ) : this; - } ) - .filter( function() { - var type = this.type; - - // Use .is( ":disabled" ) so that fieldset[disabled] works - return this.name && !jQuery( this ).is( ":disabled" ) && - rsubmittable.test( this.nodeName ) && !rsubmitterTypes.test( type ) && - ( this.checked || !rcheckableType.test( type ) ); - } ) - .map( function( i, elem ) { - var val = jQuery( this ).val(); - - if ( val == null ) { - return null; - } - - if ( Array.isArray( val ) ) { - return jQuery.map( val, function( val ) { - return { name: elem.name, value: val.replace( rCRLF, "\r\n" ) }; - } ); - } - - return { name: elem.name, value: val.replace( rCRLF, "\r\n" ) }; - } ).get(); - } -} ); - - -var - r20 = /%20/g, - rhash = /#.*$/, - rantiCache = /([?&])_=[^&]*/, - rheaders = /^(.*?):[ \t]*([^\r\n]*)$/mg, - - // #7653, #8125, #8152: local protocol detection - rlocalProtocol = /^(?:about|app|app-storage|.+-extension|file|res|widget):$/, - rnoContent = /^(?:GET|HEAD)$/, - rprotocol = /^\/\//, - - /* Prefilters - * 1) They are useful to introduce custom dataTypes (see ajax/jsonp.js for an example) - * 2) These are called: - * - BEFORE asking for a transport - * - AFTER param serialization (s.data is a string if s.processData is true) - * 3) key is the dataType - * 4) the catchall symbol "*" can be used - * 5) execution will start with transport dataType and THEN continue down to "*" if needed - */ - prefilters = {}, - - /* Transports bindings - * 1) key is the dataType - * 2) the catchall symbol "*" can be used - * 3) selection will start with transport dataType and THEN go to "*" if needed - */ - transports = {}, - - // Avoid comment-prolog char sequence (#10098); must appease lint and evade compression - allTypes = "*/".concat( "*" ), - - // Anchor tag for parsing the document origin - originAnchor = document.createElement( "a" ); - originAnchor.href = location.href; - -// Base "constructor" for jQuery.ajaxPrefilter and jQuery.ajaxTransport -function addToPrefiltersOrTransports( structure ) { - - // dataTypeExpression is optional and defaults to "*" - return function( dataTypeExpression, func ) { - - if ( typeof dataTypeExpression !== "string" ) { - func = dataTypeExpression; - dataTypeExpression = "*"; - } - - var dataType, - i = 0, - dataTypes = dataTypeExpression.toLowerCase().match( rnothtmlwhite ) || []; - - if ( isFunction( func ) ) { - - // For each dataType in the dataTypeExpression - while ( ( dataType = dataTypes[ i++ ] ) ) { - - // Prepend if requested - if ( dataType[ 0 ] === "+" ) { - dataType = dataType.slice( 1 ) || "*"; - ( structure[ dataType ] = structure[ dataType ] || [] ).unshift( func ); - - // Otherwise append - } else { - ( structure[ dataType ] = structure[ dataType ] || [] ).push( func ); - } - } - } - }; -} - -// Base inspection function for prefilters and transports -function inspectPrefiltersOrTransports( structure, options, originalOptions, jqXHR ) { - - var inspected = {}, - seekingTransport = ( structure === transports ); - - function inspect( dataType ) { - var selected; - inspected[ dataType ] = true; - jQuery.each( structure[ dataType ] || [], function( _, prefilterOrFactory ) { - var dataTypeOrTransport = prefilterOrFactory( options, originalOptions, jqXHR ); - if ( typeof dataTypeOrTransport === "string" && - !seekingTransport && !inspected[ dataTypeOrTransport ] ) { - - options.dataTypes.unshift( dataTypeOrTransport ); - inspect( dataTypeOrTransport ); - return false; - } else if ( seekingTransport ) { - return !( selected = dataTypeOrTransport ); - } - } ); - return selected; - } - - return inspect( options.dataTypes[ 0 ] ) || !inspected[ "*" ] && inspect( "*" ); -} - -// A special extend for ajax options -// that takes "flat" options (not to be deep extended) -// Fixes #9887 -function ajaxExtend( target, src ) { - var key, deep, - flatOptions = jQuery.ajaxSettings.flatOptions || {}; - - for ( key in src ) { - if ( src[ key ] !== undefined ) { - ( flatOptions[ key ] ? target : ( deep || ( deep = {} ) ) )[ key ] = src[ key ]; - } - } - if ( deep ) { - jQuery.extend( true, target, deep ); - } - - return target; -} - -/* Handles responses to an ajax request: - * - finds the right dataType (mediates between content-type and expected dataType) - * - returns the corresponding response - */ -function ajaxHandleResponses( s, jqXHR, responses ) { - - var ct, type, finalDataType, firstDataType, - contents = s.contents, - dataTypes = s.dataTypes; - - // Remove auto dataType and get content-type in the process - while ( dataTypes[ 0 ] === "*" ) { - dataTypes.shift(); - if ( ct === undefined ) { - ct = s.mimeType || jqXHR.getResponseHeader( "Content-Type" ); - } - } - - // Check if we're dealing with a known content-type - if ( ct ) { - for ( type in contents ) { - if ( contents[ type ] && contents[ type ].test( ct ) ) { - dataTypes.unshift( type ); - break; - } - } - } - - // Check to see if we have a response for the expected dataType - if ( dataTypes[ 0 ] in responses ) { - finalDataType = dataTypes[ 0 ]; - } else { - - // Try convertible dataTypes - for ( type in responses ) { - if ( !dataTypes[ 0 ] || s.converters[ type + " " + dataTypes[ 0 ] ] ) { - finalDataType = type; - break; - } - if ( !firstDataType ) { - firstDataType = type; - } - } - - // Or just use first one - finalDataType = finalDataType || firstDataType; - } - - // If we found a dataType - // We add the dataType to the list if needed - // and return the corresponding response - if ( finalDataType ) { - if ( finalDataType !== dataTypes[ 0 ] ) { - dataTypes.unshift( finalDataType ); - } - return responses[ finalDataType ]; - } -} - -/* Chain conversions given the request and the original response - * Also sets the responseXXX fields on the jqXHR instance - */ -function ajaxConvert( s, response, jqXHR, isSuccess ) { - var conv2, current, conv, tmp, prev, - converters = {}, - - // Work with a copy of dataTypes in case we need to modify it for conversion - dataTypes = s.dataTypes.slice(); - - // Create converters map with lowercased keys - if ( dataTypes[ 1 ] ) { - for ( conv in s.converters ) { - converters[ conv.toLowerCase() ] = s.converters[ conv ]; - } - } - - current = dataTypes.shift(); - - // Convert to each sequential dataType - while ( current ) { - - if ( s.responseFields[ current ] ) { - jqXHR[ s.responseFields[ current ] ] = response; - } - - // Apply the dataFilter if provided - if ( !prev && isSuccess && s.dataFilter ) { - response = s.dataFilter( response, s.dataType ); - } - - prev = current; - current = dataTypes.shift(); - - if ( current ) { - - // There's only work to do if current dataType is non-auto - if ( current === "*" ) { - - current = prev; - - // Convert response if prev dataType is non-auto and differs from current - } else if ( prev !== "*" && prev !== current ) { - - // Seek a direct converter - conv = converters[ prev + " " + current ] || converters[ "* " + current ]; - - // If none found, seek a pair - if ( !conv ) { - for ( conv2 in converters ) { - - // If conv2 outputs current - tmp = conv2.split( " " ); - if ( tmp[ 1 ] === current ) { - - // If prev can be converted to accepted input - conv = converters[ prev + " " + tmp[ 0 ] ] || - converters[ "* " + tmp[ 0 ] ]; - if ( conv ) { - - // Condense equivalence converters - if ( conv === true ) { - conv = converters[ conv2 ]; - - // Otherwise, insert the intermediate dataType - } else if ( converters[ conv2 ] !== true ) { - current = tmp[ 0 ]; - dataTypes.unshift( tmp[ 1 ] ); - } - break; - } - } - } - } - - // Apply converter (if not an equivalence) - if ( conv !== true ) { - - // Unless errors are allowed to bubble, catch and return them - if ( conv && s.throws ) { - response = conv( response ); - } else { - try { - response = conv( response ); - } catch ( e ) { - return { - state: "parsererror", - error: conv ? e : "No conversion from " + prev + " to " + current - }; - } - } - } - } - } - } - - return { state: "success", data: response }; -} - -jQuery.extend( { - - // Counter for holding the number of active queries - active: 0, - - // Last-Modified header cache for next request - lastModified: {}, - etag: {}, - - ajaxSettings: { - url: location.href, - type: "GET", - isLocal: rlocalProtocol.test( location.protocol ), - global: true, - processData: true, - async: true, - contentType: "application/x-www-form-urlencoded; charset=UTF-8", - - /* - timeout: 0, - data: null, - dataType: null, - username: null, - password: null, - cache: null, - throws: false, - traditional: false, - headers: {}, - */ - - accepts: { - "*": allTypes, - text: "text/plain", - html: "text/html", - xml: "application/xml, text/xml", - json: "application/json, text/javascript" - }, - - contents: { - xml: /\bxml\b/, - html: /\bhtml/, - json: /\bjson\b/ - }, - - responseFields: { - xml: "responseXML", - text: "responseText", - json: "responseJSON" - }, - - // Data converters - // Keys separate source (or catchall "*") and destination types with a single space - converters: { - - // Convert anything to text - "* text": String, - - // Text to html (true = no transformation) - "text html": true, - - // Evaluate text as a json expression - "text json": JSON.parse, - - // Parse text as xml - "text xml": jQuery.parseXML - }, - - // For options that shouldn't be deep extended: - // you can add your own custom options here if - // and when you create one that shouldn't be - // deep extended (see ajaxExtend) - flatOptions: { - url: true, - context: true - } - }, - - // Creates a full fledged settings object into target - // with both ajaxSettings and settings fields. - // If target is omitted, writes into ajaxSettings. - ajaxSetup: function( target, settings ) { - return settings ? - - // Building a settings object - ajaxExtend( ajaxExtend( target, jQuery.ajaxSettings ), settings ) : - - // Extending ajaxSettings - ajaxExtend( jQuery.ajaxSettings, target ); - }, - - ajaxPrefilter: addToPrefiltersOrTransports( prefilters ), - ajaxTransport: addToPrefiltersOrTransports( transports ), - - // Main method - ajax: function( url, options ) { - - // If url is an object, simulate pre-1.5 signature - if ( typeof url === "object" ) { - options = url; - url = undefined; - } - - // Force options to be an object - options = options || {}; - - var transport, - - // URL without anti-cache param - cacheURL, - - // Response headers - responseHeadersString, - responseHeaders, - - // timeout handle - timeoutTimer, - - // Url cleanup var - urlAnchor, - - // Request state (becomes false upon send and true upon completion) - completed, - - // To know if global events are to be dispatched - fireGlobals, - - // Loop variable - i, - - // uncached part of the url - uncached, - - // Create the final options object - s = jQuery.ajaxSetup( {}, options ), - - // Callbacks context - callbackContext = s.context || s, - - // Context for global events is callbackContext if it is a DOM node or jQuery collection - globalEventContext = s.context && - ( callbackContext.nodeType || callbackContext.jquery ) ? - jQuery( callbackContext ) : - jQuery.event, - - // Deferreds - deferred = jQuery.Deferred(), - completeDeferred = jQuery.Callbacks( "once memory" ), - - // Status-dependent callbacks - statusCode = s.statusCode || {}, - - // Headers (they are sent all at once) - requestHeaders = {}, - requestHeadersNames = {}, - - // Default abort message - strAbort = "canceled", - - // Fake xhr - jqXHR = { - readyState: 0, - - // Builds headers hashtable if needed - getResponseHeader: function( key ) { - var match; - if ( completed ) { - if ( !responseHeaders ) { - responseHeaders = {}; - while ( ( match = rheaders.exec( responseHeadersString ) ) ) { - responseHeaders[ match[ 1 ].toLowerCase() + " " ] = - ( responseHeaders[ match[ 1 ].toLowerCase() + " " ] || [] ) - .concat( match[ 2 ] ); - } - } - match = responseHeaders[ key.toLowerCase() + " " ]; - } - return match == null ? null : match.join( ", " ); - }, - - // Raw string - getAllResponseHeaders: function() { - return completed ? responseHeadersString : null; - }, - - // Caches the header - setRequestHeader: function( name, value ) { - if ( completed == null ) { - name = requestHeadersNames[ name.toLowerCase() ] = - requestHeadersNames[ name.toLowerCase() ] || name; - requestHeaders[ name ] = value; - } - return this; - }, - - // Overrides response content-type header - overrideMimeType: function( type ) { - if ( completed == null ) { - s.mimeType = type; - } - return this; - }, - - // Status-dependent callbacks - statusCode: function( map ) { - var code; - if ( map ) { - if ( completed ) { - - // Execute the appropriate callbacks - jqXHR.always( map[ jqXHR.status ] ); - } else { - - // Lazy-add the new callbacks in a way that preserves old ones - for ( code in map ) { - statusCode[ code ] = [ statusCode[ code ], map[ code ] ]; - } - } - } - return this; - }, - - // Cancel the request - abort: function( statusText ) { - var finalText = statusText || strAbort; - if ( transport ) { - transport.abort( finalText ); - } - done( 0, finalText ); - return this; - } - }; - - // Attach deferreds - deferred.promise( jqXHR ); - - // Add protocol if not provided (prefilters might expect it) - // Handle falsy url in the settings object (#10093: consistency with old signature) - // We also use the url parameter if available - s.url = ( ( url || s.url || location.href ) + "" ) - .replace( rprotocol, location.protocol + "//" ); - - // Alias method option to type as per ticket #12004 - s.type = options.method || options.type || s.method || s.type; - - // Extract dataTypes list - s.dataTypes = ( s.dataType || "*" ).toLowerCase().match( rnothtmlwhite ) || [ "" ]; - - // A cross-domain request is in order when the origin doesn't match the current origin. - if ( s.crossDomain == null ) { - urlAnchor = document.createElement( "a" ); - - // Support: IE <=8 - 11, Edge 12 - 15 - // IE throws exception on accessing the href property if url is malformed, - // e.g. http://example.com:80x/ - try { - urlAnchor.href = s.url; - - // Support: IE <=8 - 11 only - // Anchor's host property isn't correctly set when s.url is relative - urlAnchor.href = urlAnchor.href; - s.crossDomain = originAnchor.protocol + "//" + originAnchor.host !== - urlAnchor.protocol + "//" + urlAnchor.host; - } catch ( e ) { - - // If there is an error parsing the URL, assume it is crossDomain, - // it can be rejected by the transport if it is invalid - s.crossDomain = true; - } - } - - // Convert data if not already a string - if ( s.data && s.processData && typeof s.data !== "string" ) { - s.data = jQuery.param( s.data, s.traditional ); - } - - // Apply prefilters - inspectPrefiltersOrTransports( prefilters, s, options, jqXHR ); - - // If request was aborted inside a prefilter, stop there - if ( completed ) { - return jqXHR; - } - - // We can fire global events as of now if asked to - // Don't fire events if jQuery.event is undefined in an AMD-usage scenario (#15118) - fireGlobals = jQuery.event && s.global; - - // Watch for a new set of requests - if ( fireGlobals && jQuery.active++ === 0 ) { - jQuery.event.trigger( "ajaxStart" ); - } - - // Uppercase the type - s.type = s.type.toUpperCase(); - - // Determine if request has content - s.hasContent = !rnoContent.test( s.type ); - - // Save the URL in case we're toying with the If-Modified-Since - // and/or If-None-Match header later on - // Remove hash to simplify url manipulation - cacheURL = s.url.replace( rhash, "" ); - - // More options handling for requests with no content - if ( !s.hasContent ) { - - // Remember the hash so we can put it back - uncached = s.url.slice( cacheURL.length ); - - // If data is available and should be processed, append data to url - if ( s.data && ( s.processData || typeof s.data === "string" ) ) { - cacheURL += ( rquery.test( cacheURL ) ? "&" : "?" ) + s.data; - - // #9682: remove data so that it's not used in an eventual retry - delete s.data; - } - - // Add or update anti-cache param if needed - if ( s.cache === false ) { - cacheURL = cacheURL.replace( rantiCache, "$1" ); - uncached = ( rquery.test( cacheURL ) ? "&" : "?" ) + "_=" + ( nonce++ ) + uncached; - } - - // Put hash and anti-cache on the URL that will be requested (gh-1732) - s.url = cacheURL + uncached; - - // Change '%20' to '+' if this is encoded form body content (gh-2658) - } else if ( s.data && s.processData && - ( s.contentType || "" ).indexOf( "application/x-www-form-urlencoded" ) === 0 ) { - s.data = s.data.replace( r20, "+" ); - } - - // Set the If-Modified-Since and/or If-None-Match header, if in ifModified mode. - if ( s.ifModified ) { - if ( jQuery.lastModified[ cacheURL ] ) { - jqXHR.setRequestHeader( "If-Modified-Since", jQuery.lastModified[ cacheURL ] ); - } - if ( jQuery.etag[ cacheURL ] ) { - jqXHR.setRequestHeader( "If-None-Match", jQuery.etag[ cacheURL ] ); - } - } - - // Set the correct header, if data is being sent - if ( s.data && s.hasContent && s.contentType !== false || options.contentType ) { - jqXHR.setRequestHeader( "Content-Type", s.contentType ); - } - - // Set the Accepts header for the server, depending on the dataType - jqXHR.setRequestHeader( - "Accept", - s.dataTypes[ 0 ] && s.accepts[ s.dataTypes[ 0 ] ] ? - s.accepts[ s.dataTypes[ 0 ] ] + - ( s.dataTypes[ 0 ] !== "*" ? ", " + allTypes + "; q=0.01" : "" ) : - s.accepts[ "*" ] - ); - - // Check for headers option - for ( i in s.headers ) { - jqXHR.setRequestHeader( i, s.headers[ i ] ); - } - - // Allow custom headers/mimetypes and early abort - if ( s.beforeSend && - ( s.beforeSend.call( callbackContext, jqXHR, s ) === false || completed ) ) { - - // Abort if not done already and return - return jqXHR.abort(); - } - - // Aborting is no longer a cancellation - strAbort = "abort"; - - // Install callbacks on deferreds - completeDeferred.add( s.complete ); - jqXHR.done( s.success ); - jqXHR.fail( s.error ); - - // Get transport - transport = inspectPrefiltersOrTransports( transports, s, options, jqXHR ); - - // If no transport, we auto-abort - if ( !transport ) { - done( -1, "No Transport" ); - } else { - jqXHR.readyState = 1; - - // Send global event - if ( fireGlobals ) { - globalEventContext.trigger( "ajaxSend", [ jqXHR, s ] ); - } - - // If request was aborted inside ajaxSend, stop there - if ( completed ) { - return jqXHR; - } - - // Timeout - if ( s.async && s.timeout > 0 ) { - timeoutTimer = window.setTimeout( function() { - jqXHR.abort( "timeout" ); - }, s.timeout ); - } - - try { - completed = false; - transport.send( requestHeaders, done ); - } catch ( e ) { - - // Rethrow post-completion exceptions - if ( completed ) { - throw e; - } - - // Propagate others as results - done( -1, e ); - } - } - - // Callback for when everything is done - function done( status, nativeStatusText, responses, headers ) { - var isSuccess, success, error, response, modified, - statusText = nativeStatusText; - - // Ignore repeat invocations - if ( completed ) { - return; - } - - completed = true; - - // Clear timeout if it exists - if ( timeoutTimer ) { - window.clearTimeout( timeoutTimer ); - } - - // Dereference transport for early garbage collection - // (no matter how long the jqXHR object will be used) - transport = undefined; - - // Cache response headers - responseHeadersString = headers || ""; - - // Set readyState - jqXHR.readyState = status > 0 ? 4 : 0; - - // Determine if successful - isSuccess = status >= 200 && status < 300 || status === 304; - - // Get response data - if ( responses ) { - response = ajaxHandleResponses( s, jqXHR, responses ); - } - - // Convert no matter what (that way responseXXX fields are always set) - response = ajaxConvert( s, response, jqXHR, isSuccess ); - - // If successful, handle type chaining - if ( isSuccess ) { - - // Set the If-Modified-Since and/or If-None-Match header, if in ifModified mode. - if ( s.ifModified ) { - modified = jqXHR.getResponseHeader( "Last-Modified" ); - if ( modified ) { - jQuery.lastModified[ cacheURL ] = modified; - } - modified = jqXHR.getResponseHeader( "etag" ); - if ( modified ) { - jQuery.etag[ cacheURL ] = modified; - } - } - - // if no content - if ( status === 204 || s.type === "HEAD" ) { - statusText = "nocontent"; - - // if not modified - } else if ( status === 304 ) { - statusText = "notmodified"; - - // If we have data, let's convert it - } else { - statusText = response.state; - success = response.data; - error = response.error; - isSuccess = !error; - } - } else { - - // Extract error from statusText and normalize for non-aborts - error = statusText; - if ( status || !statusText ) { - statusText = "error"; - if ( status < 0 ) { - status = 0; - } - } - } - - // Set data for the fake xhr object - jqXHR.status = status; - jqXHR.statusText = ( nativeStatusText || statusText ) + ""; - - // Success/Error - if ( isSuccess ) { - deferred.resolveWith( callbackContext, [ success, statusText, jqXHR ] ); - } else { - deferred.rejectWith( callbackContext, [ jqXHR, statusText, error ] ); - } - - // Status-dependent callbacks - jqXHR.statusCode( statusCode ); - statusCode = undefined; - - if ( fireGlobals ) { - globalEventContext.trigger( isSuccess ? "ajaxSuccess" : "ajaxError", - [ jqXHR, s, isSuccess ? success : error ] ); - } - - // Complete - completeDeferred.fireWith( callbackContext, [ jqXHR, statusText ] ); - - if ( fireGlobals ) { - globalEventContext.trigger( "ajaxComplete", [ jqXHR, s ] ); - - // Handle the global AJAX counter - if ( !( --jQuery.active ) ) { - jQuery.event.trigger( "ajaxStop" ); - } - } - } - - return jqXHR; - }, - - getJSON: function( url, data, callback ) { - return jQuery.get( url, data, callback, "json" ); - }, - - getScript: function( url, callback ) { - return jQuery.get( url, undefined, callback, "script" ); - } -} ); - -jQuery.each( [ "get", "post" ], function( i, method ) { - jQuery[ method ] = function( url, data, callback, type ) { - - // Shift arguments if data argument was omitted - if ( isFunction( data ) ) { - type = type || callback; - callback = data; - data = undefined; - } - - // The url can be an options object (which then must have .url) - return jQuery.ajax( jQuery.extend( { - url: url, - type: method, - dataType: type, - data: data, - success: callback - }, jQuery.isPlainObject( url ) && url ) ); - }; -} ); - - -jQuery._evalUrl = function( url, options ) { - return jQuery.ajax( { - url: url, - - // Make this explicit, since user can override this through ajaxSetup (#11264) - type: "GET", - dataType: "script", - cache: true, - async: false, - global: false, - - // Only evaluate the response if it is successful (gh-4126) - // dataFilter is not invoked for failure responses, so using it instead - // of the default converter is kludgy but it works. - converters: { - "text script": function() {} - }, - dataFilter: function( response ) { - jQuery.globalEval( response, options ); - } - } ); -}; - - -jQuery.fn.extend( { - wrapAll: function( html ) { - var wrap; - - if ( this[ 0 ] ) { - if ( isFunction( html ) ) { - html = html.call( this[ 0 ] ); - } - - // The elements to wrap the target around - wrap = jQuery( html, this[ 0 ].ownerDocument ).eq( 0 ).clone( true ); - - if ( this[ 0 ].parentNode ) { - wrap.insertBefore( this[ 0 ] ); - } - - wrap.map( function() { - var elem = this; - - while ( elem.firstElementChild ) { - elem = elem.firstElementChild; - } - - return elem; - } ).append( this ); - } - - return this; - }, - - wrapInner: function( html ) { - if ( isFunction( html ) ) { - return this.each( function( i ) { - jQuery( this ).wrapInner( html.call( this, i ) ); - } ); - } - - return this.each( function() { - var self = jQuery( this ), - contents = self.contents(); - - if ( contents.length ) { - contents.wrapAll( html ); - - } else { - self.append( html ); - } - } ); - }, - - wrap: function( html ) { - var htmlIsFunction = isFunction( html ); - - return this.each( function( i ) { - jQuery( this ).wrapAll( htmlIsFunction ? html.call( this, i ) : html ); - } ); - }, - - unwrap: function( selector ) { - this.parent( selector ).not( "body" ).each( function() { - jQuery( this ).replaceWith( this.childNodes ); - } ); - return this; - } -} ); - - -jQuery.expr.pseudos.hidden = function( elem ) { - return !jQuery.expr.pseudos.visible( elem ); -}; -jQuery.expr.pseudos.visible = function( elem ) { - return !!( elem.offsetWidth || elem.offsetHeight || elem.getClientRects().length ); -}; - - - - -jQuery.ajaxSettings.xhr = function() { - try { - return new window.XMLHttpRequest(); - } catch ( e ) {} -}; - -var xhrSuccessStatus = { - - // File protocol always yields status code 0, assume 200 - 0: 200, - - // Support: IE <=9 only - // #1450: sometimes IE returns 1223 when it should be 204 - 1223: 204 - }, - xhrSupported = jQuery.ajaxSettings.xhr(); - -support.cors = !!xhrSupported && ( "withCredentials" in xhrSupported ); -support.ajax = xhrSupported = !!xhrSupported; - -jQuery.ajaxTransport( function( options ) { - var callback, errorCallback; - - // Cross domain only allowed if supported through XMLHttpRequest - if ( support.cors || xhrSupported && !options.crossDomain ) { - return { - send: function( headers, complete ) { - var i, - xhr = options.xhr(); - - xhr.open( - options.type, - options.url, - options.async, - options.username, - options.password - ); - - // Apply custom fields if provided - if ( options.xhrFields ) { - for ( i in options.xhrFields ) { - xhr[ i ] = options.xhrFields[ i ]; - } - } - - // Override mime type if needed - if ( options.mimeType && xhr.overrideMimeType ) { - xhr.overrideMimeType( options.mimeType ); - } - - // X-Requested-With header - // For cross-domain requests, seeing as conditions for a preflight are - // akin to a jigsaw puzzle, we simply never set it to be sure. - // (it can always be set on a per-request basis or even using ajaxSetup) - // For same-domain requests, won't change header if already provided. - if ( !options.crossDomain && !headers[ "X-Requested-With" ] ) { - headers[ "X-Requested-With" ] = "XMLHttpRequest"; - } - - // Set headers - for ( i in headers ) { - xhr.setRequestHeader( i, headers[ i ] ); - } - - // Callback - callback = function( type ) { - return function() { - if ( callback ) { - callback = errorCallback = xhr.onload = - xhr.onerror = xhr.onabort = xhr.ontimeout = - xhr.onreadystatechange = null; - - if ( type === "abort" ) { - xhr.abort(); - } else if ( type === "error" ) { - - // Support: IE <=9 only - // On a manual native abort, IE9 throws - // errors on any property access that is not readyState - if ( typeof xhr.status !== "number" ) { - complete( 0, "error" ); - } else { - complete( - - // File: protocol always yields status 0; see #8605, #14207 - xhr.status, - xhr.statusText - ); - } - } else { - complete( - xhrSuccessStatus[ xhr.status ] || xhr.status, - xhr.statusText, - - // Support: IE <=9 only - // IE9 has no XHR2 but throws on binary (trac-11426) - // For XHR2 non-text, let the caller handle it (gh-2498) - ( xhr.responseType || "text" ) !== "text" || - typeof xhr.responseText !== "string" ? - { binary: xhr.response } : - { text: xhr.responseText }, - xhr.getAllResponseHeaders() - ); - } - } - }; - }; - - // Listen to events - xhr.onload = callback(); - errorCallback = xhr.onerror = xhr.ontimeout = callback( "error" ); - - // Support: IE 9 only - // Use onreadystatechange to replace onabort - // to handle uncaught aborts - if ( xhr.onabort !== undefined ) { - xhr.onabort = errorCallback; - } else { - xhr.onreadystatechange = function() { - - // Check readyState before timeout as it changes - if ( xhr.readyState === 4 ) { - - // Allow onerror to be called first, - // but that will not handle a native abort - // Also, save errorCallback to a variable - // as xhr.onerror cannot be accessed - window.setTimeout( function() { - if ( callback ) { - errorCallback(); - } - } ); - } - }; - } - - // Create the abort callback - callback = callback( "abort" ); - - try { - - // Do send the request (this may raise an exception) - xhr.send( options.hasContent && options.data || null ); - } catch ( e ) { - - // #14683: Only rethrow if this hasn't been notified as an error yet - if ( callback ) { - throw e; - } - } - }, - - abort: function() { - if ( callback ) { - callback(); - } - } - }; - } -} ); - - - - -// Prevent auto-execution of scripts when no explicit dataType was provided (See gh-2432) -jQuery.ajaxPrefilter( function( s ) { - if ( s.crossDomain ) { - s.contents.script = false; - } -} ); - -// Install script dataType -jQuery.ajaxSetup( { - accepts: { - script: "text/javascript, application/javascript, " + - "application/ecmascript, application/x-ecmascript" - }, - contents: { - script: /\b(?:java|ecma)script\b/ - }, - converters: { - "text script": function( text ) { - jQuery.globalEval( text ); - return text; - } - } -} ); - -// Handle cache's special case and crossDomain -jQuery.ajaxPrefilter( "script", function( s ) { - if ( s.cache === undefined ) { - s.cache = false; - } - if ( s.crossDomain ) { - s.type = "GET"; - } -} ); - -// Bind script tag hack transport -jQuery.ajaxTransport( "script", function( s ) { - - // This transport only deals with cross domain or forced-by-attrs requests - if ( s.crossDomain || s.scriptAttrs ) { - var script, callback; - return { - send: function( _, complete ) { - script = jQuery( " - - - - - - - - - - - - - - - - - - -
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    Files used in PDF extraction

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    Configuration file

    -

    Configuration files may define the PDF processing parameters. -By default, the pdfgetx3 program attempts to read -.pdfgetx3.cfg file from the user HOME directory, -then .pdfgetx3.cfg and pdfgetx3.cfg files -from the current working directory. -If configuration file has a different name, it needs to be specified -with the -c, --config option. -The pdfgetn3 program works in the same way, -except it checks for configuration files -~/.pdfgetn3.cfg, .pdfgetn3.cfg and pdfgetn3.cfg.

    -

    The easiest way of creating a configuration file is to generate -a template content using the --createconfig option as

    -
    pdfgetx3 --createconfig=test.cfg
-
    -
    -

    and then change the generated test.cfg file in your favorite text -editor. The configuration file follows a simple “varname=value” syntax, -any lines starting with “#” are ignored as comments.

    -

    The configuration file has several sections marked as [SECTIONNAME]. -The [DEFAULT] section is mandatory and it contains the default -global settings. Any other sections are optional and they are applied -only when selected with the -s, --section option on the -command line. Thus

    -
    pdfgetx3 --config=test.cfg --section=nacl
-
    -
    -

    would read the parameters from the [nacl] section after reading the -defaults. Having several sections in the configuration -file is useful when there are multiple measurements that share most of -the parameters, but differ in a few of them, for example in chemical -composition. The configuration file can then contain sections per each -sample that define only the composition, while all other parameters are -specified just once in the global DEFAULT section.

    -
    -
    -

    Input files

    -

    PDFgetX3 and PDFgetN3 accept input powder diffraction data -in the form of two-column text file, -where the first column x is either the scattering angle -2Θ in degrees, momentum transfer Q in inverse nanometers or Q -in inverse ångströms. The second column y contains the corresponding -scattered intensities normalized per unit solid angle. The actual type -of the x-values is identified by the dataformat parameter. -The input files may contain header with comments or metadata, and the -actual data are read from the first long section of numerical values.

    -

    The input files are usually passed as command-line arguments to -pdfgetx3 or pdfgetn3 programs and must be paths -accessible from the current working directory.

    -

    Input files can be also defined by setting the inputfile -value in the configuration file. The -d, --datapath -option can be then used to provide additional data directories to -search for these inputs and for the backgroundfile. -This is to support configuration files located in a different -directory than the data.

    -

    When the --find option is active, the pdfgetx3 arguments -are understood as filename patterns and the input files are found -in the current or specified directory.

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    -
    -

    Output files

    -

    PDFgetX3 and PDFgetN3 can produce up to four different output data files:

    -
      -

    • .iq – I(Q), the background-corrected -intensities sampled on a regular Q-space grid in inverse ångströms,

      • -

    • .sq – S(Q), the total scattering structure function, -with intensities normalized by average scattering factors and -corrected by a polynomial fit,

      • -

    • .fq – F(Q), the reduced structure function equal to Q(S(Q) - 1),

      • -

    • .gr – G(r), the resultant PDF, where the first column is the -separation r in ångströms and the second is the function G in -Å-2.

      • -
    -

    You can specify what output files should be produced by setting the -outputtypes parameter in the configuration file or by -passing the -t, --outputtypes on the command line.

    -

    The header of all output files contains the parameter values that were -used in the calculation and thus it is by itself a valid configuration -file. When passed as an argument to the --config option, -the PDFgetX3 will reproduce the previous calculation.

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    Navigation

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    Software requirements

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    This software is written in Python programming language, therefore -you must have Python 3.8, 3.7, 3.6, 3.5 or 2.7 installed. In addition, -the following third-party Python libraries are also required:

    -
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    • pip - Python package installer

      • -

    • setuptools - tools for installing Python packages

      • -

    • six - Python 2 and 3 compatibility library

      • -

    • NumPy - library for scientific computing with Python

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    • matplotlib - Python plotting library

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    • IPython - enhanced interactive Python shell

      • -
    -

    Standard Python releases can be obtained from -https://www.python.org/downloads. -The third-party libraries can be found at the -Python Package Index -or using any Internet search engine.

    -

    Another more convenient option is to obtain one of the science-oriented -Python distributions such as -Anaconda Python, -Enthought Canopy or -PythonXY, -These distributions already include all the necessary libraries, so the -required Python software can be all installed in one step.

    -

    On Linux operating systems the third-party libraries are usually -included in a system software repository. For example on an -Ubuntu Linux computer the software dependencies can be all installed -with a single shell command

    -
    sudo apt-get install \
-  python3-pip python3-setuptools python3-six \
-  python3-numpy python3-matplotlib ipython3
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    -
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    This may be, of course, as well accomplished using the GUI -driven Synaptic package manager. Other Linux -distributions may use different software management tools, -but the names of the necessary packages should be very similar -to those above.

    -

    On Windows operating system, it may be necessary to add the -C:\Python37 directory and the scripts directory -C:\Python37\Scripts to the system PATH. Some Python -distributions already do so as a part of their installation process. The -easiest way to check is to start the Command Prompt, type -there python and see if this starts the Python interpreter.

    -

    Alternately, if you want to run the diffpy.pdfgetx software with a specific version of Python, -we recommend using a virtual environment, such as conda. For example, if you have Anaconda Python installed, -you can create a conda virtual environment to install the software as follow

    -
    conda create --name pdfgetx_env python=3.8 numpy matplotlib ipython
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    You can choose the name of the environment and python version as you desire. You can choose any of the -supported Python versions. Then, activate this environment and follow the instructions in the -next section to install the software

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    conda activate pdfgetx_env
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    Installation

    -

    The diffpy.pdfgetx software is distributed as a Python wheel file, -which can be obtained from the -Columbia Technology Ventures. -Once all the required software is in -place, start the command prompt on Windows or a Unix terminal on Linux -or Mac, navigate to the directory that contains the wheel file and -execute the following command:

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    pip install ./diffpy.pdfgetx-VERSION.whl
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    -
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    Here VERSION needs to be replaced to match the actual filename. It is -critical that pip installer is from a supported Python version otherwise -the program would not work. On Linux and Mac operating systems the installation may need to run with root user privileges, for example, by prepending sudo to the command line above. If root access is not available, use the pip install options --user or --prefix to install the software to a user-writable directory.

    -

    The package provides three programs for PDF conversion, pdfgetx3, pdfgetn3 and pdfgets3. To check if they are correctly installed run

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    pdfgetx3 --version
-pdfgetn3 --version
-pdfgets3 --version
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    -
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    This should display the software version, which should agree -with the VERSION string in the wheel package name. -The installation also includes a plotdata -command for an easy plotting of text data files. To verify -if plotdata works, run the plotdata --version command. -Finally, a comprehensive test of the installed software can -be executed using

    -
    python -m diffpy.pdfgetx.tests.run
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    Note

    -

    Older versions of diffpy.pdfgetx use Python egg format -instead of Python wheel. -To install these use the easy_install command as follows:

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    python -m easy_install ./diffpy.pdfgetx-VERSION.egg
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    IPython magic command

    -

    These instructions are intended for IPython users who would like to -integrate PDFgetX3, PDFgetN3 and PDFgetS3 into their IPython environment. If -you don’t plan to customize IPython in such way you can safely skip -this paragraph.

    -

    When pdfgetx3 or pdfgetn3 or pdfgets3 is run in interactive mode, it start -IPython interactive shell and define an extra %pdfgetx3, %pdfgetn3 and %pdfgets3 magic commands within the IPython session. The IPython -magic commands are not valid Python code, but work in a similar -fashion as standard shell commands. The %pdfgetx3, %pdfgetn3 and %pdfgets3 magics can be thus used with the same options and arguments as if run from the shell. This is useful for processing more files, while -preserving all plots or variables that were already created -in an IPython session.

    -

    The %pdfgetx3, %pdfgetn3 and %pdfgets3 magic commands can be defined -permanently so they are available in all IPython sessions. To set -this up

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      -

    1. find the profile_default/ipython_config.py file and open it -in a text editor. If that file does not exists, -create it first by executing

      -
      ipython profile create
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      -
      -
      2. -

    2. navigate to the paragraph that contains the -c.InteractiveShellApp.extensions and add there -the following line

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      c.InteractiveShellApp.extensions = ['diffpy.pdfgetx.ipy_magics']
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      There must be no leading indent, i.e., the text must start at the -very first column.

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    Navigation

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    Interactive mode

    -

    The interactive mode is activated by using either the --i, --interact option or a non-empty ---plot option. In the interactive mode -the program starts an IPython interactive shell and pre-loads several -functions and variables related to the PDF calculation. It also defines -IPython commands %pdfgetx3 and %pdfgetn3, which can be used with -the same syntax as the pdfgetx3 and pdfgetn3 in -system shell. -The interactive session is also initialized with all functions from the -matplotlib.pyplot module for convenient plotting. -The functions and variables related to PDF processing are:

    -
    -
    -pdfgetter(x=None, y=None, filename='', **kwargs)
    -

    Instance of the PDFGetter class which serves as a -low-level function that calculates the PDF. This is a callable -object, which takes as an argument a pair of input arrays for -(Q, intensity) or (2Θ, intensity) depending on -dataformat. It can be also called with a keyword -argument filename=FILE, which would read the input arrays -from the specified file. When called with no arguments, -it calculates PDF from the last input data.

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    Parameters
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    • x (numpy.ndarray, optional) – -The Q or 2Θ values in powder diffraction pattern.

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    • y (numpy.ndarray, optional) – -The scattered intensities in powder diffraction pattern

      • -

    • filename (str, optional) – -The text data file for loading the x, y values when -they are not specified.

      • -

    • kwargs (misc, optional) – -Extra keyword arguments that are applied to -the config object, for example qmax=20.

      • -
    -
    -
    Returns
    -

    A pair of output arrays (r, G).

    -
    -
    -
    - -
    -
    -config
    -

    Instance of the PDFConfig class that stores the -parameters and input files for the program. -Use print(config) to display the current configuration values. -This is the same object as pdfgetter.config. Configuration -may be changed by setting a respective attribute of the -config object, for example:

    -
    In [1]: config.qmax = 21
-
    -
    -

    The config values may be also changed by calling the -pdfgetter() or processfiles() function with a -corresponding keyword argument, for example -processfiles(qmax=20, force="once").

    -
    - -
    -
    -iraw
    -
    -iq
    -
    -sq
    -
    -fq
    -
    -gr
    -

    These variables are assigned the input raw intensities and the -intermediate results, stored as matrix rows. The matrix rows -correspond to twotheta1, intensity1, twotheta2, intensity2, etc. -Because matrices are iterated row first, the raw intensities -from all input files can be plotted with the matplotlib plot -function as plot(*iraw).

    -

    These variables should be considered read-only and are reset -with subsequent PDF calculations.

    -
    - -
    -
    -tuneconfig(plotids=None, pdfgetter=None, axeslist=None)
    -

    Show a GUI dialog for interactive tuning of configuration variables.

    -
    -
    Parameters
    -
      -

    • plotids – The string or iterable that specify what interactive plots should be -tuned. By default the same as config.plot. It can be also an -integer index or name of a transformation in pdfgetter() or -a reference to a Transformation object.

      • -

    • pdfgetter – The optional PDFGetter object to be tuned. -This is by default the interactive pdfgetter() object.

      • -

    • axeslist – An optional list of matplotlib Axes for showing interactive plots. -When None, use subplot(N, 1, i) to create any necessary axes.

      • -
    -
    -
    -
    -

    Note

    -

    Changes from tuneconfig() apply only to the configuration -and results in memory. Use the processfiles() function -to save them to disk.

    -
    -
    -

    See also

    -

    Interactive tuning of parameters tutorial

    -
    -
    - -
    -
    -processfiles(filename=None, **kwargs)
    -

    Process all input files again with the current configuration values. -This is a higher-level function than pdfgetter(), as -it also saves output files and produces plots as specified by the -config object.

    -
    -
    Parameters
    -
      -

    • filename – One or more input files to be converted to PDFs and saved or -plotted according to the config settings. Use the -previous list of input files when not specified.

      • -

    • kwargs – An optional keyword arguments to set for the config -object, for example (force="once", qmax=18).

      • -
    -
    -
    -

    This function updates the config.inputfiles -list and the iraw, iq, -sq, fq and gr -interactive variables.

    -
    - -
    -
    -clearsession()
    -

    Clear all elements from the config.inputfiles -and also the -iraw, iq, sq, -fq and gr variables.

    -
    -
    Returns
    -

    No return value.

    -
    -
    -
    - -
    -
    -loaddata(filename, minrows=10, usecols=None, **kwargs)
    -

    Find and load data from a text file.

    -

    The data reading starts at the first matrix block of at least minrows rows -and constant number of columns. This seems to work for most of the -datafiles including those generated by PDFGetX2.

    -
    -
    Parameters
    -
      -

    • filename (str) – Name of the file to load the text data from.

      • -

    • minrows (int, optional) – Minimum number of rows in the first data block, by default 10. -All rows must have the same number of floating point values.

      • -

    • usecols (int, str, slice, iterable, optional) – Indices or names of the columns to be loaded from the data block, -the default is all columns. Data blocks that do not contain -sufficient number of columns are skipped. When usecols contain -string items, they are translated to column indices by looking -up a header line preceding the data block. String items formatted -as i:j:k are converted to slice objects. When usecols type -is string it is split to a list of names at comma and whitespace -characters.

      • -

    • unpack (bool, optional) – Return data as a sequence of columns that allows tuple unpacking -such as x, y = loaddata(FILENAME, unpack=True). Note that -transposing the loaded array as loaddata(FILENAME).T has -the same effect. The default is False.

      • -

    • kwargs (misc, optional) – Extra keyword arguments that are passed to numpy.loadtxt.

      • -
    -
    -
    Returns
    -

    data (numpy.ndarray) – The data block loaded from the text file.

    -
    -
    -
    -

    See also

    -

    numpy.loadtxt()

    -
    -

    This function can be imported from the -diffpy.pdfgetx module.

    -
    - -
    -
    -plotdata(filenames, style=None, x=None, y=None, log=None, ax=None, **kwargs)
    -

    Plot one or more text data files.

    -

    The files are searched for data blocks which have enough columns -to satisfy both x and y selectors of the plotted data. This -may result in an empty plot when file has none wide-enough data -block (e.g., when y=100).

    -
    -
    Parameters
    -
      -

    • filenames (str or an iterable of string file names) – One or more text data files to be plotted.

      • -

    • style (str) – Optional style argument for the matplotlib plot() function.

      • -

    • x (int, str, or iterable, optional) – The column to be used for the x data. This can be a zero-based -index of the desired column or a column name from data header. -A special symbol “.” can be used for a sequential data index. -When not specified, use the first column.

      • -

    • y (int, str, iterable, or slice, optional) – One or more columns to be used for the y data. This can be -a single zero-based index of the desired column or an iterable -of several indices. The y value can be also a string which -is split at commas and converted to integers, column names -or slice objects, e.g. “0,sine,4:7”. The slice instances -are applied to the entire data block from each loaded file. -Use the second column when not specified.

      • -

    • log ({‘x’, ‘y’}, optional) – Set logarithmic scaling for the specified axis and linear scaling -for all others. For example, log="y" applies linear scaling -to the x-axis and logarithmic to the y-axis. Keep the current -axis scaling when not specified.

      • -

    • ax (matplotlib.axes.Axes, optional) – The axes to plot to. The plotting will be performed using the -ax.plot method. The default is pyplot.gca().

      • -

    • kwargs (misc, optional) – Keyword arguments for the matplotlib plot() function.

      • -
    -
    -
    Returns
    -

    lines (list) – The matplotlib Line2D objects added to the current axis.

    -
    -
    -
    -

    See also

    -

    diffpy.pdfgetx.loaddata()

    -
    -

    This function can be imported from the -diffpy.pdfgetx.plotdata module.

    -
    - -
    -
    -findfiles(patterns=(), path='.', dotfiles=False)
    -

    Find files that match all specified patterns.

    -

    Pattern syntax:

    -
      -

    • ^start - match “start” only at the beginning of the string.

      • -

    • end$ - match “end” only at the end of string.

      • -

    • <7> - match number 7 preceded by any number of leading zeros.

      • -

    • <1-34> - match an integer range from 1 to 34 inclusive.

      • -

    • <7-> - match an integer greater or equal 7.

      • -

    • <-> - match any integer.

      • -

    • + - start a new group of patterns to match more files.

      • -

    • dir/ - set search path effective from the current pattern group.

      • -
    -

    All integer ranges <N-M> above allow one or more leading zeros. -The range syntax does not support matching of negative numbers.

    -
    -
    Parameters
    -
      -

    • patterns (iterable of strings or str, optional) – String patterns that must all match in returned filenames. -Can be also a single string with patterns separated by -whitespace characters. When empty match all files in the -current directory or in the path. A single + starts -a new pattern group for additional matches. Each pattern -group may have one entry containing /, for example, -dir/ or ./, which sets the search directory for -this and subsequent pattern groups. When pattern group -contains only the path entry it reuses file patterns from -the previous group.

      • -

    • path (str, optional) – Directory to be searched for the files. The default is “.” -to search the current directory.

      • -

    • dotfiles (bool, optional) – When True search also the hidden “.” starting files. These -files are by default ignored, but can be explicitly selected -by adding the ^. pattern.

      • -
    -
    -
    Returns
    -

    filenames (list) – The list of matching filenames. Return all files when -patterns are not specified.

    -
    -
    -

    This function can be imported from the -diffpy.pdfgetx module.

    -
    - -
    - - -
    -
    -
    - -
    -
    -
    -

    Navigation

    - -
    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.1.2/intro.html b/static_root/doc/pdfgetx/2.1.2/intro.html deleted file mode 100644 index ed8ce2bc..00000000 --- a/static_root/doc/pdfgetx/2.1.2/intro.html +++ /dev/null @@ -1,176 +0,0 @@ - - - - - - Introduction — diffpy.pdfgetx 2.1.2 documentation - - - - - - - - - - - - - - - - - - - - - - -
    -

    Navigation

    - -
    - - - -
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    -
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    - -
    -

    Introduction

    -

    diffpy.pdfgetx is a simple yet powerful software for converting X-ray or -neutron powder diffraction data to atomic Pair Distribution Functions -(PDFs). In addition, it also allows the extraction of PDFs from small-angle -scattering (SAS) data. The software includes three command line programs -PDFgetX3, PDFgetN3 and PDFgetS3 for processing X-ray, -constant-wavelength neutron and small-angle diffraction data -respectively. PDFgetX3, PDFgetN3 and PDFgetS3 can be used in a batch -mode to convert a series of data files without user intervention. The -programs can be also run in an interactive mode that allows to control -process parameters and plot the PDFs and any intermediate results. Users -can interactively tune the PDF processing parameters, visualize their effect on the results and adjust them to their optimum values. The programs are bundled with Python library diffpy.pdfgetx for PDF processing functions, which can be used in custom Python scripts.

    -
    -

    License notice

    -

    Use of this software is subject to and permitted only under a separate, -written Use License granted by Columbia University. If you or your employer -is not a party to such an agreement, then your use of this software is -prohibited. If you don’t know whether or not your anticipated use is under -a license, you must contact Prof. Simon Billinge at sb2896@columbia.edu. -Use of this software without a license is prohibited.

    -

    Copyright 2009-2020, Trustees of Columbia University in the City of New York.

    -

    For more information please email Prof. Simon Billinge at sb2896@columbia.edu

    -
    -
    -

    Authors

    -

    This code was written by members of the Billinge Group at -Columbia University and Brookhaven National Laboratory including -Pavol Juhás, -Timur Davis, -Chia-Hao (Timothy) Liu, -Christopher Wright, -Christopher Farrow, -Hung Vuong, -Songsheng Tao, -Simon Billinge.

    -
    -
    -

    References

    -

    If you use this program for a scientific research that leads -to publication, we ask that you acknowledge use of the program -by citing the following paper in your publication:

    -
    -

    P. Juhás and T. Davis, C. L. Farrow, S. J. L. Billinge -PDFgetX3: A rapid and highly automatable program for processing -powder diffraction data into total scattering pair distribution -functions, -J. Appl. Crystallogr. 46, 560-566 (2013)

    -
    -

    For research publications that use this software to process neutron -diffraction data we ask you to also cite:

    -
    -

    P. Juhás, J. N. Louwen, L. van Eijck, E. T. C. Vogt, -S. J. L. Billinge -PDFgetN3: atomic pair distribution functions from neutron -powder diffraction data using ad hoc corrections, -J. Appl. Crystallogr. 51 (2018)

    -
    -

    For research publications utilising the sasPDF utility, PDFGetS3, we ask you to acknowledge the use of the program by citing following paper in your publication:

    -
    -

    CH Liu, E. Janke, R. Li, P. Juhás, O. Gang, D. V. Talapin, S. J. L. Billinge -sasPDF: pair distribution function analysis of nanoparticle assemblies from small-angle-scattering data.

    -
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    -
    -

    Navigation

    - -
    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.1.2/options.html b/static_root/doc/pdfgetx/2.1.2/options.html deleted file mode 100644 index 1e47bfa9..00000000 --- a/static_root/doc/pdfgetx/2.1.2/options.html +++ /dev/null @@ -1,663 +0,0 @@ - - - - - - Options and parameters — diffpy.pdfgetx 2.1.2 documentation - - - - - - - - - - - - - - - - - - - - - - -
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    Navigation

    - -
    - - - -
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    - -
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    Options and parameters

    -

    PDFgetX3, PDFgetN3 and PDFgetS3 are very flexible in allowing users to customize -the actions of the program. They have a number of parameters that can -be specified either in configuration file or as command line options. -Here is a complete description of the parameters and options used by -either program.

    -
    -

    Note

    -

    The command line options start with a leading “-” and can -be only used as command line arguments when starting the -pdfgetx3 program. Within configuration file the parameter -names are plain words without any leading dashes. Finally, -parameters can be also set in the interactive mode as attributes of -the config object, but the assignments must be valid -Python statements. Here are examples of setting composition of -a processed specimen using each of these forms:

    -
      -

    1. assigned in configuration file:

      -
      ...
-composition = CaTiO3
-...
-
      -
      -
      2. -

    2. set as a command-line option when starting pdfgetx3 or -pdfgetn3:

      -
      pdfgetx3 --composition=CaTiO3
-
      -
      -
      3. -

    3. set in the IPython interactive mode:

      -
      pdfgetx3 -i
-...
-In [1]: config.composition = "CaTiO3"
-
      -
      -
      4. -
    -
    -
    -

    Program operation

    -
    -
    --h, --help
    -

    Display a brief usage information with a list of command line options -and exit.

    -
    - -
    -
    --V, --version
    -

    Display the program version and exit.

    -
    - -
    -
    ---manual
    -

    Open this manual in a Web browser and exit.

    -
    - -
    -
    --f, --find
    -
    - -
    -

    Select input files that match all patterns. The command -line arguments are by default taken as input files. However, -with the --find option they are processed as -file patterns and the matching files are then used as inputs. -The input files are by default searched in the current directory -unless there is a path entry (e.g., data/) that -selects a different search path. The search patterns are -interpreted as fixed strings, all of which must be present -in the file name. A single argument + starts -a new group of patterns to match more files that are not -covered by one set of patterns. Additional pattern -groups reuse the current search path unless they provide -their own path value. Pattern groups containing only -a path entry reuse file patterns from the last group. -When pattern groups overlap the repeated matches are ignored -to make the resulting list of files unique. Files starting -with . are ignored unless there is ^. pattern -that explicitly matches them. The search -syntax provides the following special patterns:

    - ---- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

    ^

    match at the beginning of the string, i.e., ^start -matches only filenames that start with “start”.

    $

    match at the end of string, for example, .chi$ selects -file names ending with “.chi”. A $ on its own -matches every string and can be used to select all files.

    <N>

    match number N preceded by any number of leading zeros, -e.g., <7> would match in “f7.chi”, “f007.chi”, but not -in “f77.chi”.

    <N-M>

    match an integer range from N to M inclusive. -The matched number may have one or more leading zeros.

    <7->

    match number 7 or larger.

    <-7>

    match number 7 or smaller.

    <->

    match any integer number.

    +

    start a new pattern group, for example, .chi$ + .dat$

    /

    set search path. An argument containing the / symbol -is taken as the search path, for example, data/ or -./. Each pattern group may provide its own search -path effective for that and any subsequent pattern group.

    -

    The ^$<> characters are often special to Unix or Windows -command shells, therefore they need to be enclosed in double -quotes (") when used on command line.

    -
    -

    See also

    -

    tutorial on matching input files

    -
    -
    -
    -
    --l, --list
    -

    List all input files and exit. This is useful with the ---find option to verify if input files -are matched as intended.

    -
    - -
    -
    -

    Configuration file options

    -
    -
    --c CONFIG, --config=CONFIG
    -

    Read custom configuration file after loading the default ones. -Do not load any configuration file when “NONE”.

    -
    - -
    -
    --s NAME, --section=NAME
    -

    Load the custom configuration file section [SectionName] after -loading the [DEFAULT] section. This is useful for creating -several configuration variants in a single configuration file.

    -
    - -
    -
    ---createconfig=FILE
    -

    Write template configuration to a new FILE and exit. Write -to the standard output when FILE is “-“.

    -
    - -

    See also the configuration file section -for further details.

    -
    -
    -

    Input and output options

    -
    -
    -inputfile
    -

    This parameter allows to specify one or more input files in the -configuration file, one file per line. The inputfile -is only used if no input files were provided on the -pdfgetx3 or pdfgetn3 command line.

    -
    - -
    -
    -dataformat
    -
    - -
    -
    ---format=FORMAT
    -

    Format of input files. Available formats are: twotheta, QA, -Qnm corresponding to a two-column text data where the first -column is either the scattering angle 2Θ in degrees, Q in -inverse ångströms or Q in inverse nanometers.

    -
    - -
    -
    -backgroundfile
    -
    - -
    -
    --b FILE, --background=FILE
    -

    Optional datafile with background intensities from an empty sample -holder. It must be in the same dataformat as other input files.

    -
    - -
    -

    Note

    -

    The following input is only used in sas mode.

    -
    -
    -
    -formfactorfile
    -
    - -
    -
    --ff FILE, --formfactorfile=FILE
    -

    Form factor intensities of the scatterers. This is required for sas mode. The form factor file is expected to be in two-column format with (Q, f2avg) data or three-column format with (Q, f2avg, favg2) data. The unit of Q is required to be A^-1.

    -
    - -
    -
    -datapath
    -
    - -
    -
    --d DATAPATH, --datapath=DATAPATH
    -

    One or more extra directories to be searched for input or -background data files. The -d option can be specified -several times to add more directories, these are prepended in front -of any default value. Within configuration file the datapath -directories have to be listed each on a separate line.

    -

    A special value “NONE” (or “none”) clears any previously defined -paths and only the further paths, if any, would be searched for -inputs.

    -
    - -
    -
    -output
    -
    - -
    -
    --o OUTPUT, --output=OUTPUT
    -

    Output file name, write to the standard output when “-“. The --t, --outputtypes option controls what results are -being saved. Normally the OUTPUT is used as a custom basename for -the output files. The OUTPUT may contain @f, @h, @r, @e, @t, @b, @o -tokens, which are expanded as follows:

    - ----- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

    token

    example

    definition

    @h

    dir1/dir2

    the input file directory or “.”

    @r

    dir1/dir2/filename

    the input path with extension removed

    @e

    dat

    the input file extension without “.”

    @t

    filename.dat

    the tail component of the input file

    @b

    filename

    the tail component with extension removed

    @o

    gr

    the output extension iq, sq, fq or gr

    -

    An empty value works the same as “@b.@o” and saves the data -in the current directory with a proper extension for the -saved results. When “@o” is not present in the OUTPUT, it is -appended as a default filename extension.

    -
    - -
    -
    -outputtypes
    -
    - -
    -
    --t TYPES, --outputtypes=TYPES
    -

    Result types to be saved, one or more comma separated values. -Supported values are “iq”, “sq”, “fq”, “gr”, corresponding to the -I(Q), S(Q), F(Q) and G(r) curves; these are also used as output -file extensions.

    -

    Result files are not written when empty, “none” or “NONE”.

    -
    - -
    -
    -force
    -
    - -
    -
    ---force=FORCE
    -

    Overwrite existing output files. By default the output -files are not written if they already exist. Possible values -in a configuration file are “true”, “yes”, “on”, “1” or -“false”, “no”, “off”, “0” or “once”. The special value “once” -permits one overwrite and then resets config.force to -False. Note that in interactive mode the values assigned -to config.force are converted to Python bool -unless equal to “once”.

    -
    - -
    -
    -

    PDF parameters

    -
    -
    -mode
    -
    - -
    -
    ---mode=STRING
    -

    The PDF conversion mode, i.e., the name of the -pdfgetter() setup. The available modes correspond -to the radiation type used in powder diffraction experiment and can -be “xray” or “neutron”.

    -
    - -
    -
    -wavelength
    -
    - -
    -
    --w FLOAT, --wavelength=FLOAT
    -

    X-ray wavelength in ångströms. This value is required -for the “twotheta” dataformat in order to convert the scattering -angles 2Θ to a momentum transfer Q. For other data formats -the wavelength is not necessary and may be left undefined.

    -
    - -
    -
    -twothetazero
    -
    - -
    -
    ---twothetazero=FLOAT
    -

    Position of the zero scattering angle in diffractometer degrees. -This parameter corrects for a constant offset in the -measured 2Θ values. When loading configuration file -it is assumed 0 unless specified otherwise. This parameter -is only effective for the “twotheta” dataformat.

    -
    - -
    -
    -composition
    -
    - -
    -
    ---composition=STRING
    -

    Chemical composition of the sample. Supported formats are -“PbTi0.5Zr0.5O3”, “Pb 1 Ti 1/2 Zr 1/2 O 3” or “CH3 (CH2)3 OH”. -Space characters are ignored, unit counts can be omitted, but it is -important to use a proper upper and lower case in atom symbols. -Elements can appear several times in the formula, e.g., “CH3 CH3”, -and the formula may contain parentheses or fractional -stoichiometries.

    -
    - -
    -
    -bgscale
    -
    - -
    -
    ---bgscale=FLOAT
    -

    Scaling of the background intensities loaded from the -backgroundfile, by default 1.

    -
    - -
    -
    -rpoly
    -
    - -
    -
    ---rpoly=FLOAT
    -

    r-limit for the maximum frequency in the F(Q) correction polynomial. -The PDF is unreliable at shorter r, however a -very small rpoly would disable polynomial correction and -give noisy PDF. -Larger values produce closer fits with a higher degree polynomial, -but when too large, they might smooth-out a useful signal in the -data. The default is 0.9.

    -
    - -
    -
    -qmaxinst
    -
    - -
    -
    ---qmaxinst
    -

    The Q cutoff for the meaningful input intensities in inverse -ångströms. Some data files may contain trailing zeros -or unreliable intensities at the upper bound of the detector range. -The qmaxinst defines a threshold for unreliable data. -The parameter is also used as an upper boundary for the polynomial -fit correction of the S(Q) data.

    -
    - -
    -
    -qmin
    -
    - -
    -
    ---qmin
    -

    The lower Q-limit for the Fourier transformation of the F(Q) curve -in inverse ångströms.

    -
    - -
    -
    -qmax
    -
    - -
    -
    ---qmax
    -

    The upper Q-limit for the Fourier transformation of the F(Q) curve -in inverse ångströms. This is essentially a limit, where sample -signal decays to the level of data noise.

    -
    - -
    -
    -rmin
    -
    - -
    -
    ---rmin=FLOAT
    -

    Lower bound of the r-grid for the calculated PDF in ångströms.

    -
    - -
    -
    -rmax
    -
    - -
    -
    ---rmax=FLOAT
    -

    Upper bound of the r-grid for the calculated PDF in ångströms.

    -
    - -
    -
    -rstep
    -
    - -
    -
    ---rstep=FLOAT
    -

    Spacing of the r-grid for the calculated PDF in ångströms.

    -
    - -
    -
    -

    Other parameters

    -
    -
    -plot
    -
    - -
    -
    --p TYPES, --plot=TYPES
    -

    Plot the specified results. A comma separated list with one or -more items from “iq”, “sq”, “fq”, “gr”. No plot is produced when -empty, “none” or “NONE”. Setting this option turns on the -interactive mode.

    -
    - -
    -
    -interact
    -
    - -
    -
    --i, --interact
    -

    Start an IPython interactive session after processing all files. -Useful for tuning the configuration parameters or interactive -plotting. This is always on when plot option has been set. -See also Interactive mode for further details.

    -
    - -
    -
    -verbose
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    - -
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    ---verbose=VALUE
    -

    Level of detail for the program to report about its actions. -Possible values are “error”, “warning”, “info”, “debug”, “all” or an -integer number from 0 to 5. Messages are completely suppressed when -0, all messages are printed when verbose is 5 (“all”) or higher. -This option is useful for diagnostics of any unexpected behavior -in the program.

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    Navigation

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    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.1.2/pdfgetxn3-examples.zip b/static_root/doc/pdfgetx/2.1.2/pdfgetxn3-examples.zip deleted file mode 100755 index ce2b55c4..00000000 Binary files a/static_root/doc/pdfgetx/2.1.2/pdfgetxn3-examples.zip and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.1.2/plotdata.html b/static_root/doc/pdfgetx/2.1.2/plotdata.html deleted file mode 100644 index 7c3d4827..00000000 --- a/static_root/doc/pdfgetx/2.1.2/plotdata.html +++ /dev/null @@ -1,278 +0,0 @@ - - - - - - The plotdata program — diffpy.pdfgetx 2.1.2 documentation - - - - - - - - - - - - - - - - - - - - - - -
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    Navigation

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    The plotdata program

    -

    The PDFgetX3 software includes a simple stand-alone utility -plotdata for plotting text data files. In most cases -this program can be invoked from a command-shell as

    -
    plotdata file1.dat file2.dat
-
    -
    -

    which plots the numerical data from the text files file1.dat, -file2.dat together in a single graph. By default the first -column is used as an x variable and the second column is used for the -y values. After displaying the plot the program starts an IPython -interactive session allowing the user to modify or save plots. The -IPython session is initialized with the filenames variable -containing a list of plotted files. It also pre-loads the -plotdata() and findfiles() functions just as in PDFgetX3 -interactive session. The plotdata() -function works in a similar way as the plotdata program, -just its arguments need to be passed as Python function arguments -instead of command-line options. Thus an equivalent call of the -plotdata() function would be:

    -
    In [1]: plotdata(['file1.dat', 'file2.dat'])
-
    -
    -
    -

    Selecting files

    -

    The plotdata program includes a file searching feature -that is useful for selecting a set of files in large -directories. It is also convenient for Windows operating systems, -where the command prompt cannot do filename expansion for patterns -such as *.dat. The file search feature is controlled by the -following options:

    -
    -
    --f, --find
    -

    Use command line arguments as filename patterns and plot all matching -files. This option works in the same way as for -pdfgetx3, for full details see the -pdfgetx3 --find documentation. Note that -within command line the special patterns ^$<> need to be quoted -in double quotes (") so they are not processed by command shell.

    -
    - -
    -
    --l, --list
    -

    List the input files and exit. This is useful in conjunction -with the -f, --find option to check if data files -are selected as intended.

    -
    - -

    Assuming the current directory contains 20 files named -file1.dat, file2.dat, …, file20.dat, -the plotting of files 9 to 13 could be done (with a check listing) -as follows

    -
    $ plotdata -fl "<9-13>.dat"
-file9.dat
-file10.dat
-file11.dat
-file12.dat
-file13.dat
-$ plotdata -f "<9-13>.dat"
-
    -
    -

    Within an interactive IPython session the equivalent plot could be -produced by combining the plotdata() and findfiles() functions as

    -
    In [1]: plotdata(findfiles("<9-13>.dat"))
-
    -
    -
    -
    -

    Selecting x and y data

    -

    The plotdata program provides several ways of selecting -columns for x or y data and for specifying plot markers or line -formats. The columns can be specified using their integer index, -but one needs to keep in mind the index of the first column is “0” -as per Python indexing conventions. Here is a list of options -supported by the plotdata program (and function):

    -
    -
    --x X
    -

    index or name of the x-column to plot. See the -y option -for the supported syntax, but note that X may select only one -column. When set to “.” use the data-row index for x.

    -
    - -
    -
    --y Y
    -

    index or name of the y-column or columns to plot. The Y column -specification can be a comma separated list of indices, column names -or Python-like ranges, for example “1,2”, “G”, “1:4” (START:STOP, -same as “1,2,3”), “1:4:2” (START:STOP:STEP, same as “1,3”), or -“-2:” (same as “-2,-1”, i.e, the last 2 columns). Because column -indexing starts at “0” the second column must be specified as “1”.

    -

    The column names work if the data section in the file is preceded by -a headline of unique column names, for example:

    -
    x     square      cube
-1     1           1
-2     4           8
-3     9           27
-4     16          64
-
    -
    -

    For such data file the plotdata program will recognize column names -“x”, “square” and “cube” and an implicit “.” for row index.

    -
    - -
    -
    --s STYLE, --style=STYLE
    -

    optional plot format specification. See the -matplotlib.pyplot.plot() function -for a list of available formats.

    -
    - -
    -
    --L LOG, --log=LOG
    -

    axes to be plotted with logarithmic scaling, for example, “x”, “y” or -“xy”. Axes not listed in LOG will use linear scaling.

    -
    - -
    -
    --h, --help
    -

    display a brief usage info and exit.

    -
    - -
    -
    --V, --version
    -

    show program version and exit.

    -
    - -
    -
    ---manual
    -

    Open this manual page in a Web browser and exit.

    -
    - -
    -
    -

    Examples

    -

    The examples directory plotdata contains a sincos.dat -file that has 3-columns of values labeled as “x”, “sin” and “cos”. -Here are several examples of the plotdata capabilities -when used from command line - the user is encouraged to try them out:

    -
    plotdata sincos.dat
-plotdata -y 1,2 sincos.dat
-plotdata -x . -y 0:3 sincos.dat
-plotdata -y cos sincos.dat
-plotdata -x sin -y cos -sr-- sincos.dat
-
    -
    -

    An equivalent usage from a general IPython session would be:

    -
    ipython --matplotlib=auto
-In [1]: from diffpy.pdfgetx.plotdata import plotdata
-In [2]: plotdata('sincos.dat')
-In [3]: plotdata('sincos.dat', y=[1,2])
-In [4]: plotdata('sincos.dat', x='.', y=':3')
-In [5]: plotdata('sincos.dat', y='cos')
-In [6]: plotdata('sincos.dat', x='sin', y='cos', style='r--')
-
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    Quick-start guide

    -

    This guide assumes that the software has been correctly installed and -its command line programs PDFgetX3, PDFgetN3 and PDFgetS3 can be -executed by typing pdfgetx3, pdfgetn3, or -pdfgets3 in a shell window. Please, refer to the installation section if this is not working yet.

    -
    -

    pdfgetx3 command

    -

    The pdfgetx3 program is a command-line application, therefore all -the input files and run-parameters are supplied either as command-line -arguments or through a configuration file. In general, the pdfgetx3 is -executed from a command shell as

    -
    pdfgetx3 [options] input1 input2 ... inputN
-
    -
    -

    The inputN stands for an input powder diffraction data. The -inputN file is a simple two-column text file, where the first -column corresponds to either the 2Θ diffraction angle, or a -momentum transfer, Q, in inverse nanometer or inverse ångström units. -The second column contains the corresponding X-ray intensities. The -input file may start with a header containing comments or metadata -related to the measurement. PDFgetX3 will ignore any text leading to a -long two-column section. The example input files in this manual were -created with the -FIT2D program using -its “chi” output format, thus we will also refer to them as “chi-files”. -A typical content of a “chi” file looks as folows:

    -
    Pt_bulk-00055.tif: 2-theta Scan
-2-Theta Angle (Degrees)
-
-       1465
- 2.0003892E-02  0.0000000E+00
- 6.0011677E-02  0.0000000E+00
- 1.0001946E-01  0.0000000E+00
- 1.4002724E-01  0.0000000E+00
- 1.8003502E-01  0.0000000E+00
- ...
-
    -
    -

    The command-line options are arguments that start with a dash “-” and -are used to specify run-parameters or modify the program behavior. The -options can be specified in a short form that consists of a dash and -a single character, or in a long, more descriptive format starting with -a doubled dash --. Options may require values. For short options, -the value may be joined to the option string, for example --w0.142774, while for the long options it has to be separated -with an equal sign, e.g., --wavelength=0.142774. Although -all the PDF calculation parameters can be passed as command line -options, it is often more convenient to set them in a configuration -file. When run parameter is present both in a configuration file and -as command-line option, the command-line value takes precedence. The -command-line options are all described in the Options and parameters section of -this manual. A brief summary of options can be also displayed by -executing

    -
    pdfgetx3 --help
-
    -
    -

    The best way of getting familiar with PDFgetX3 is to process -the example diffraction data described in the Tutorial. -In general, the first step is to create a commented configuration file pdfgetx3.cfg using:

    -
    pdfgetx3 --createconfig=pdfgetx3.cfg
-
    -
    -

    The configuration file can have any name, but it is preferable -to use either pdfgetx3.cfg or .pdfgetx3.cfg, -for these files are automatically loaded by PDFgetX3. All -other configuration files must be passed explicitly to the program -using the -c, --config option.

    -

    Open the pdfgetx3.cfg file in a text editor. The lines that -start with a hash mark # are comments and are not used. The lines -starting with a right brace [ denote sections in the configuration -file. The active lines are all formatted as -“NAME=VALUE”. Although PDFgetX3 has many options, in general only a few -of them are critical for the PDF calculation:

    -
      -

    • dataformat – specifies the input data format

      • -

    • wavelength – radiation wavelength in Å required for the -“twotheta” format.

      • -

    • composition – chemical composition of the sample

      • -

    • qmaxinst – upper Q boundary for a meaningful measurement -intensities.

      • -

    • qmax – Q-cutoff for the Fourier transformation that -yields the PDF.

      • -
    -

    Save the updated configuration file and run pdfgetx3 on the input data -FILENAME.chi as

    -
    pdfgetx3 --verbose=info -t gr FILENAME.chi
-
    -
    -

    Here the --verbose=info option makes pdfgetx3 -print -more information about its operation. This helps to verify -if the configuration file is indeed loaded and if the parameter -values are assigned as intended. The PDFgetX3 will not write -any output files unless told so. The -t gr option -tells the program to save the final G(r) curve as a -FILENAME.gr file in the working directory.

    -

    The saved .gr file contains a header with all the calculation -parameters and the input file name. The .gr file can be therefore -also used as a configuration file in order to redo the same -calculation

    -
    pdfgetx3 -c FILENAME.gr --plot=fq,gr
-
    -
    -

    Note this command does not include any .chi file and this will as -a result process the previously used input FILENAME.chi. -The --plot=fq,gr option tells PDFgetX3 to -display 2 plots for the reduced structure function F(Q) and the -final PDF G(r). The --plot option also implies an -interactive mode -therefore the program does not exit, but starts an -interactive IPython session. To exit the interactive mode, -type exit() and press Enter.

    -
    -
    -

    pdfgetn3 command

    -

    The pdfgetx3 and pdfgetn3 programs operate in a very similar fashion -apart from being set to assume X-ray and neutron data respectively. -The type of the scattering data can be also specified using the ---mode option. Running pdfgetn3 is nearly identical -to executing pdfgetx3 --mode=neutron. The only difference between -these commands is that pdfgetx3 checks for configuration files -pdfgetx3.cfg and .pdfgetx3.cfg, whereas -pdfgetn3 looks for pdfgetn3.cfg and .pdfgetn3.cfg.

    -
    -
    -

    pdfgets3 command

    -

    The pdfgets3 program is virtually the same as its counterparts for x-ray -(pdfgetx3) and neutron (pdfgetn3) diffraction data. The only difference -is that instead of referencing the well documented x-ray or neutron -scattering form factor data, a user-defined form factor data is used -for getting the PDF from a small-angle scattering (SAS) data. This -behavior is enabled by specifying mode = sas in the configuration -file or in the command line tool. The pdfgets3 program by default -searches for a configuration named pdfgets3.cfg and -.pdfgets3.cfg in order, when no configuration file is specified.

    -

    Please refer to the tutorial section for a step-by-step processing of the example data files and for demonstration of the capabilities in PDFgetX3, PDFgetN3 and PDFgetS3.

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    Navigation

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    Release notes

    -
    -

    Version 2.1.2 - 2021-12-24

    -
    -

    Fixed

    -
      -

    • Fixed the command provided to the users in the installation instructions which -incorrectly instructed them to setup a Python environment in which pdfgetx -could be installed by using the flag --python=3.8 to the correct usage of -this flag as python=3.8.

      • -
    -
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    Version 2.1.1 - 2020-09-01

    -
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    Added

    -
      -

    • Support for Python 3.8

      • -
    -
    -
    -
    -

    Version 2.1.0 – 2020-07-15

    -
    -

    Added

    -
      -

    • New mode sas for processing Small Angle Scattering data and -for using custom scattering factors.

      • -

    • qmax-pushes-qmin coupling of sliders in the tuneconfig tool.

      • -

    • New program pdfgets3 and IPython magic %pdfgets3.

      • -
    -
    -
    -

    Changed

    -
      -

    • Software distribution format to a universal Python wheel.

      • -

    • tuneconfig dialog to access full Q-range with all qmin, qmax, and -qmaxinst sliders. Increased range for the rpoly slider.

      • -
    -
    -
    -

    Deprecated

    -
      -

    • Software distribution in setuptools egg package.

      • -
    -
    -
    -

    Removed

    -
      -

    • Support for Python 3.4.

      • -
    -
    -
    -

    Fixed

    -
      -

    • Support backslash in the --find option path argument on Windows. -Both forward and back slashes are allowed on Windows, but other -platforms must use forward slash.

      • -

    • Recipe for platform-dependent Anaconda package.

      • -

    • Bogus test failure when installed in symlinked directory.

      • -
    -
    -
    -
    -

    Version 2.0.0 – 2018-11-02

    -
    -

    Added

    -
      -

    • New mode neutron for processing constant-wavelength -neutron scattering data.

      • -

    • Correction for an offset of diffractometer zero angle.

      • -

    • Configuration parameter twothetazero and command-line option ---twothetazero for position of the actual zero angle -in diffractometer degrees.

      • -

    • New program pdfgetn3 and IPython magic %pdfgetn3.

      • -

    • Separate configuration file pdfgetn3.cfg for the pdfgetn3 program.

      • -

    • New sub-package diffpy.pdfgetx.apps for entry points to all programs.

      • -

    • Table of electron scattering factors from E. J. Kirkland, -Advanced Computing in Electron Microscopy.

      • -

    • The + operator for additive pattern groups when matching input files -with pdfgetx3 --find.

      • -

    • An optional slash-containing entry, e.g., dir/, to set the search path -for pdfgetx3 --find. Each pattern group may have one path entry which -affects the current and subsequent pattern groups. Pattern groups that -have only the path entry reuse the previous file patterns, for example, -dir1/ .dat$ + dir2/ + dir3/.

      • -

    • The dotfiles flag argument to functs.findfiles to also find -dot-starting files without an explicit pattern.

      • -

    • Support for Python 3.7.

      • -

    • Tutorial examples for constant-wavelength neutron diffraction data.

      • -
    -
    -
    -

    Changed

    -
      -

    • Initialization arguments of PDFConfig to set initial configuration values.

      • -

    • path argument of functs.findfiles to give one search path instead -of a list of paths.

      • -

    • pdfgetx3 --find to search only the current directory and stop searching -in --datapath.

      • -

    • Improved PDF accuracy by removing repeated Q-grid interpolation.

      • -

    • Handling of dot files by pdfgetx3 --find and the functs.findfiles -function. The dotfiles are by default ignored unless explicitly selected -by a "^." pattern.

      • -

    • Return type of functs.findfiles from IPython SList to a simple list.

      • -

    • Rename camel case interactive functions to lowercase, i.e., to loaddata, -processfiles, clearsession.

      • -

    • Use config.datapath lookup in processfiles(filename).

      • -
    -
    -
    -

    Deprecated

    -
      -

    • Function cromermann.felectronatq for electron scattering -factors calculation using Mott-Bethe approximate formula.

      • -

    • IPython extension module diffpy.pdfgetx.ipy_pdfgetx3. -Use diffpy.pdfgetx.ipy_magics instead.

      • -

    • Camel case functions loadData, processFiles, clearSession.

      • -
    -
    -
    -

    Removed

    -
      -

    • Support for Python 2.6.

      • -

    • Processing of environment variable PDFGETX3PATH.

      • -

    • Support for IPython 0.x.

      • -

    • Obsolete variable __gitsha__ from the version module.

      • -

    • Processing of command line options in PDFConfig class.

      • -

    • Implicit loading of configuration files in PDFConfig instantiation.

      • -
    -
    -
    -

    Fixed

    -
      -

    • Import of all objects from matplotlib.pyplot into -an interactive session started by plotdata.

      • -

    • Inaccurate G interpolation when rstep is comparable to pi / qmax.

      • -

    • Lone anchor patterns ^, $ to match everything.

      • -
    -
    -
    -
    -

    Version 1.2 – 2018-01-12

    -
    -

    Added

    -
      -

    • Support for Python 3.4, 3.5, 3.6 in addition to Python 2.6 and 2.7.

      • -

    • Support for IPython 5.0 with preserved -compatibility with IPython 0.10 and later.

      • -

    • Support for matplotlib 2.0.

      • -

    • New option --log=LOG for the plotdata program to set logarithmic -scale for either of x or y axis. The plotdata() function learnt -a new log argument with the same purpose.

      • -

    • New argument ax for the plotdata() function that select a specific -matplotlib axis for plotting.

      • -

    • Support for Unicode filenames and values in the config -interactive variable.

      • -

    • Processing of parentheses and fractional stoichiometries in chemical -formulas as in Pb (Ti Zr)1/2 O3.

      • -

    • Explanatory error message when PDFgetX3 was installed for -unsupported Python.

      • -
    -
    -
    -

    Changed

    -
      -

    • The egg package file was enhanced to support all Python -versions. The software is now distributed in a single -egg rather than multiple eggs per each Python version.

      • -

    • PDFgetX3 option --force to take a boolean argument -(yes, no, true, etc.) or once. The configuration -parameter force can be likewise set to a bool or to -a string "once". This enables a safer one-time -overwrite of existing output files.

      • -

    • Plot labels to use a proper Unicode “Å” (Ångström) symbols. -The “Å” symbol is also used within units in output files.

      • -

    • The usecols argument of the loadData() function to also -accept scalars, open-end slice objects and string-denoted -slices such as "1:3" or "1:".

      • -

    • The plotdata program and plotdata() function to accept -open-end slices for the y-columns selection.

      • -

    • The IPython magic function %pdfgetx3 to set the _exit_code -variable as do generic shell commands run from IPython.

      • -

    • Inline documentation to use NumPy-style Napoleon format, -which is human readable and can be included in the manual.

      • -

    • Release scripts to build software package bundles and -documentation in binary-reproducible way.

      • -
    -
    -
    -

    Deprecated

    -
      -

    • Compatibility with Python 2.6.

      • -

    • Support for IPython 0.x.

      • -

    • Variable __gitsha__ in the version module which was renamed -to __git_commit__.

      • -
    -
    -
    -

    Removed

    -
      -

    • The hold argument of the plotdata() function, -because it was deprecated in matplotlib.

      • -

    • Support for multiple x-columns in plotdata program and -plotdata() function.

      • -

    • Import of all objects from numpy module into the interactive -session. NumPy is available under the np name instead.

      • -
    -
    -
    -

    Fixed

    -
      -

    • Avoid duplicate “.gr.gr” extension when pdfgetx3 is run -with option --output=f.gr.

      • -

    • Crash on loading custom configuration section from a local -file, when that section is missing in global configuration.

      • -

    • Missing checkbox in the tuneconfig dialog caused by matplotlib bug.

      • -
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deleted file mode 100644 index ea4be469..00000000 --- a/static_root/doc/pdfgetx/2.1.2/tutorial.html +++ /dev/null @@ -1,819 +0,0 @@ - - - - - - Tutorial — diffpy.pdfgetx 2.1.2 documentation - - - - - - - - - - - - - - - - - - - - - - -
    -

    Navigation

    - -
    - - - -
    -
    -
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    - -
    -

    Tutorial

    -

    In this tutorial we will convert several X-ray powder diffraction -patterns to corresponding PDFs. Open a terminal on a Unix-based system -or a Command Prompt on Windows and navigate to the examples -folder included with the PDFgetX3 distribution. The examples -folder can be found in the parent “doc” directory relative to this -document or another option is to just search your file system for -one of the input files mentioned below. -The example files are also available at -https://www.diffpy.org/doc/pdfgetx/2.1.2/pdfgetxn3-examples.zip.

    -
    -

    Nickel X-ray PDF

    -
    -

    predefined configuration file

    -

    Change to the Ni directory. The file named -ni300mesh_300k_nor_1-5.chi contains powder X-ray data -measured from nickel at the Advanced Photon Source beamline -6ID-D. The file contains two columns for the 2Θ scattering -angles and X-ray intensities. The second file -kapton_bgrd_300k_nor_2-3.chi contains the background -measurement, i.e., the intensities from an empty capillary. -Finally, the pdfgetx3.cfg contains a complete configuration -parameters for converting the powder pattern to a PDF. Since all -processing parameters are already defined in the configuration file, -the first PDF calculation is very simple and involves running the -pdfgetx3 program -with the powder data file as an argument:

    -
    $ pdfgetx3 ni300mesh_300k_nor_1-5.chi
-
    -
    -

    For the first run there should be no output on the screen, -however a new file, ni300mesh_300k_nor_1-5.gr should appear -in the work directory. -We can use the plotdata program, -included with this software, to plot the output data:

    -
    $ plotdata ni300mesh_300k_nor_1-5.gr
-
    -
    -

    This will open a graph window and start an IPython interactive session. -To exit and close the figure, type exit() on the IPython prompt. -Let’s run the program again, but now with a ---verbose=info -option, to show more details about the program actions.

    -
    $ pdfgetx3 --verbose=info ni300mesh_300k_nor_1-5.chi
-
-INFO:applying pdfgetx3 defaults
-INFO:set config.mode = xray
-INFO:searching for default config file /home/user/.pdfgetx3.cfg
-INFO:searching for default config file .pdfgetx3.cfg
-INFO:searching for default config file pdfgetx3.cfg
-INFO:loaded default config file pdfgetx3.cfg
-INFO:reset config.twothetazero = 0.0
-INFO:parsing config file section [DEFAULT]
-INFO:set config.dataformat = twotheta
-INFO:set config.backgroundfile = kapton_bgrd_300k_nor_2-3.chi
-INFO:set config.outputtypes = gr
-INFO:set config.wavelength = 0.142774
-INFO:set config.composition = Ni
-INFO:set config.qmaxinst = 26.5
-INFO:set config.qmax = 26.0
-INFO:set config.rmin = 0.0
-INFO:set config.rmax = 30.0
-INFO:set config.rstep = 0.01
-INFO:finished parsing config file
-INFO:processing command line options
-INFO:set config.verbose = info
-INFO:finished with command line options
-INFO:using 1 input files from the command line.
-INFO:configuring PDFGetter mode 'xray'
-INFO:calling config_xray
-INFO:started PDF processing.
-INFO:processing 'ni300mesh_300k_nor_1-5.chi'
-INFO:resolved output file '' as 'ni300mesh_300k_nor_1-5.gr'
-WARNING:ni300mesh_300k_nor_1-5.gr already exists.
-WARNING:Use "--force=yes" or "--force=once" to overwrite.
-INFO:elapsed time: 0.095
-
    -
    -

    Here we can see what configuration files are searched, which of them -get loaded and what are the effective values of the processing -parameters. Unless the --verbose option is in effect, the -program will show only messages that have either WARNING or ERROR -importance. The warning line above indicates no output has been -written, because that file already exists. This safety check can be -overruled with the --force=yes option, upon -which pdfgetx3 would overwrite any existing files.

    -

    PDFgetX3 output files start with a header that lists all the processing -parameters and can be used as a valid configuration file with the --c option. Another option, --plot=[iq,sq,fq,gr] turns on plotting of the final PDF or of some other result. A -side effect of the --plot option is that pdfgetx3 starts in -an interactive mode, so the user can manipulate or save the plots. To -put it all together, we are now going to redo the original PDF and plot -its reduced total scattering function F(Q) and the PDF curve G(r). This -time the chi file is not necessary, because the input file is already -listed in the gr file that is now used as a custom configuration:

    -
    $ pdfgetx3 -c ni300mesh_300k_nor_1-5.gr --plot=fq,gr
-
-WARNING:ni300mesh_300k_nor_1-5.gr already exists.
-WARNING:Use "--force=yes" or "--force=once" to overwrite.
-
-Variables related to PDF processing:
-
-pdfgetter    -- PDFGetter used for calculation.
-config       -- configuration data used by PDFGetter.
-                See config.inputfiles for a list of inputs.
-iraw         -- matrix of input raw intensities with 2 rows per file.
-iq sq fq gr  -- intermediate results per each input file stored
-                as matrix rows.
-
-Functions:
-
-tuneconfig   -- dynamically tune configuration variables.
-processfiles -- process specified data files.
-clearsession -- clear all elements from the inputfiles, iraw,
-                iq, sq, fq and gr variables.
-plotdata     -- plot all or selected columns from a text data file.
-loaddata     -- load all or selected columns from a text data file.
-findfiles    -- search for files matching the specified patterns.
-
-Use "%pdfgetx3" for a fresh run without exiting IPython.
-In [1]:
-
    -
    -

    This will open a plot figure similar to

    -_images/nickelfqgr.png -

    Because of the interactive mode implied by plotting, -the program enters an IPython session. -The IPython environment is preloaded with several extra functions -and variables related to the PDF processing. For example, the -config variable stores all the configuration parameters, -and its content can be displayed with the print() -function as

    -
    In [1]: print(config)
-
-configfile = ni300mesh_300k_nor_1-5.gr
-configsection = DEFAULT
-dataformat = twotheta
-...
-qmax = 26.0
-...
-
    -
    -

    The processfiles() function allows to redo the -whole calculation and plotting process for additional input files or -for new parameter values. To plot the F(Q) and G(r) -curves calculated at Qmax = 22 Å-1, we can call -processfiles() and pass it a keyword argument for -the new qmax as follows:

    -
    In [2]: processfiles(qmax=22)
-
-# the qmax parameter was updated to a new value, thus
-In [3]: config.qmax
-Out[3]: 22
-
    -
    -

    There should be now two lines in each plot axis corresponding to -the results at Qmax equal 26 and 22 Å-1. To exit the program, -type exit().

    -
    -
    -

    processing from scratch

    -

    We have already encountered the command-line option -c -for specifying a custom configuration file. A special argument “NONE”, -will make pdfgetx3 ignore any configuration files and start up in a -default state. We can use this feature to process the nickel PDF as if -we did not have any configuration file:

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi
-
-WARNING:Nothing to do, use "-t" or "--plot" options.
-ERROR:Configuration error: wavelength not specified.
-ERROR:See "--help" for more hints.
-
    -
    -

    There is an error, for the wavelength is necessary to convert -the scattering angle 2Θ to momentum transfer Q. The -X-ray wavelength was 0.142774 Å, which can be passed with the --w, --wavelength option:

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774
-
-...
-ERROR:Configuration error: Chemical composition not known.
-ERROR:See "--help" for more hints.
-
    -
    -

    There is still an error. The PDF calculation needs an average -X-ray scattering factor of the material, which is obtained from -sample chemical composition. The composition can be specified -with the --composition option. The example -below uses a “\” character to indicate the command continues -on the next line. Such syntax works in Unix terminals, but -on Windows the command has to be typed all on a single line:

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \
-           --composition=Ni
-
-WARNING:Nothing to do, use "-t" or "--plot" options.
-...
-
    -
    -

    There was no error message this time, but the program complains -about a lack of action. The pdfgetx3 program does not write any results -unless instructed by the -t, --outputtypes option. -The outputtypes option recognizes the following result types: -“iq”, “sq”, “fq”, “gr”. One or more of these type strings, -separated by a comma, can be included with the --t option, which will produce the corresponding -output files. An empty string, such as -t "", or -t NONE -may be used to clear any outputtypes defined in the configuration file, -and avoid the unseemly file-exists warnings.

    -

    At this point, we will not write any output files, but will use the ---plot option to display the calculated curves. The ---plot accepts the same arguments as outputtypes, so to -display the F(Q) and G(r) curves we shall run

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \
-           --composition=Ni --plot=fq,gr
-
-WARNING:qmaxinst reset to last nonzero point qmaxinst=28.0865680161
-WARNING:qmax reset to the data boundary qmaxinst=28.0865680161
-
    -
    -

    which should open the following plot window:

    -_images/nickelfqgrnoisy.png -

    The graphs look terrible. The PDF is very noisy and the F(Q) curve -shows a sudden break at about 27 Å-1. What happened? The powder -intensities are inaccurate at a very top of the detector angular range. -The interactive session is setup with -iraw, iq, sq, -fq, gr -variables for the original raw data and intermediate results. We -are going to plot the “iq” variable that has the input intensities -resampled on the Q grid. The matplotlib function -clf() clears the figure, -the iq variable is a two-row matrix with Q and I rows, and the -axis() -function lets us zoom to a given range:

    -
    In [1]: clf()
-In [2]: plot(iq[0], iq[1])
-Out[2]: [<matplotlib.lines.Line2D at 0x3e20f50>]
-In [3]: axis([20, 29, 0, 3000])
-Out[3]: [20, 29, 0, 3000]
-
    -
    -

    The graph shows a sudden drop in the raw intensities at 27 Å-1. -The qmaxinst variable defines a Q cutoff for a meaningful -instrument intensities and, to be on a safe side, we are going to set -it to 26.5 Å-1

    -
    In [4]: processfiles(qmaxinst=26.5)
-WARNING:qmax reset to the data boundary qmaxinst=26.5
-
    -
    -

    The updated curves looks reasonable without any oscillations and -breakpoints. The tuneconfig() function provides a -GUI-driven way for visualizing the processing parameters and their -effect on the results. Type tuneconfig() to execute the function, -which should open a new window with several sliders. Try to move -different sliders and see how do the F(Q) and G(r) curves change. -The rpoly parameter controls the degree of data-correction -polynomial and is an approximate low-r bound of reliable G -values. Once the parameters are tuned, they may be set to -exact values. We will also turn on the writing of the G(r) -curve and save it to an output file nicmd.gr:

    -
    In [14]: config.qmax = 26
-In [15]: config.outputtypes = 'gr'
-In [16]: config.output = 'nicmd'
-In [17]: processfiles()
-
    -
    -
    -
    -
    -

    Platinum X-ray series

    -

    PDFgetX3 has been designed to handle large series of data files. -With the fast area-detectors it is easy to measure hundreds of X-ray -patterns in a time or temperature series. Normally, these input -files need to be entered as command line arguments to the pdfgetx3 -program. This is usually no problem with Unix-like shells, which -expand filename patterns to a list of matching files. -However, such file generation is in general not available on Windows. -The input file names tend to include scan numbers which are useful -for selecting desired data, yet even with Unix shells it is -difficult to match a range of scan numbers -(z-shell being a notable exception).

    -
    -

    matching input files

    -

    The pdfgetx3 program includes a built-in function for finding -a set of input files. The command line arguments are normally taken as -input file names. However, if the -f, --find option is -present, the arguments are understood as patterns and the program looks -for files that match ALL of them. Another option --l, --list makes pdfgetx3 print out the matching files -without any other action, which can be used to verify if the patterns -match intended files.

    -

    We will try out this file search on platinum example files. Open a -terminal and navigate to the Pt directory. There should be a -series subdirectory with 6 chi files indexed from 903 to 908. -At first, let’s stay in the Pt directory and run the following -command

    -
    $ pdfgetx3 --list --find
-
-Pt_bulk-00055-pdfgetx2.gr
-Pt_bulk-00055-pdfgetx3.gr
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-pdfgetx3.cfg
-plotpdfcomparison.py
-
    -
    -

    Without any patterns the file search matches all files in the current -directory. Now let’s try to add name patterns. There are few special -patterns, for example ^ matches at the beginning of the filename, $ at the end and <N-M> matches a range of integer values from -N to M. The patterns containing ^$<> need to be quoted as -these characters have special meaning in the shell. Here are some -examples how it works.

    -

    Filenames containing “y”:

    -
    $ pdfgetx3 --list --find y
-empty_capillary-00032.chi
-plotpdfcomparison.py
-
    -
    -

    Filenames that containing both “y” and “chi”, here we use the -options --list and --find in an abbreviated -form -l and -f:

    -
    $ pdfgetx3 -lf y chi
-empty_capillary-00032.chi
-
    -
    -

    Filenames that start with “e”:

    -
    $ pdfgetx3 --list --find "^e"
-empty_capillary-00032.chi
-
    -
    -

    Filenames that contain character “2”:

    -
    $ pdfgetx3 --list --find 2
-Pt_bulk-00055-pdfgetx2.gr
-empty_capillary-00032.chi
-
    -
    -

    Filenames that contain numeric value “2”:

    -
    $ pdfgetx3 -lf "<2>"
-Pt_bulk-00055-pdfgetx2.gr
-
    -
    -

    The special argument + starts a new group of patterns to -generate extra files when they cannot be all covered by -a single set of patterns. For example, to match files that -contain contain both “bulk” and “chi” substrings and then -also those that have “empty” and “chi” in their names, use:

    -
    $ pdfgetx3 -lf bulk chi + empty chi
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-
    -
    -

    When pattern groups overlap the resulting matches are -made unique and each file is listed only once

    -
    $ pdfgetx3 -lf bulk chi + chi
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-
    -
    -
    -
    -

    data search path

    -

    Each group of PDFgetX3 patterns can have one entry containing -forward slash “/” to specify a non-current path that is searched -for input files. The path specification affects the current and -the following pattern groups unless they provide their own path. -The chi files numbered “903” to “905” and “908” from the -series subdirectory can be therefore matched using

    -
    $ pdfgetx3 -lf series/ "<903-905>" + 908
-series/Pt_bulk_ramp03-00903.chi
-series/Pt_bulk_ramp03-00904.chi
-series/Pt_bulk_ramp03-00905.chi
-series/Pt_bulk_ramp03-00908.chi
-
    -
    -

    The current directory can be selected using ./

    -
    $ pdfgetx3 -lf series/ 903 + ./ bulk chi
-series/Pt_bulk_ramp03-00903.chi
-Pt_bulk-00055.chi
-
    -
    -

    When additional pattern groups contain only the path -argument, they reuse the existing set of patterns. The -“.chi”-ending files in the current and series -directories can be thus found using

    -
    $ pdfgetx3 -lf ".chi$" + series/
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-series/Pt_bulk_ramp03-00903.chi
-series/Pt_bulk_ramp03-00904.chi
-series/Pt_bulk_ramp03-00905.chi
-series/Pt_bulk_ramp03-00906.chi
-series/Pt_bulk_ramp03-00907.chi
-series/Pt_bulk_ramp03-00908.chi
-
    -
    -
    -
    -

    output file names

    -

    By default the output files are saved in the current directory. The -output path, can be changed with the -o, --output option. -The -o recognizes several tokens that are replaced with -parts of the input file name, for example, “@b” expands to an -extension-stripped base name. In similar faction, “@o” is replaced -with the output type extension. Thus to generate PDFs for all files -in the series directory and save them in the -series-gr subfolder do

    -
    $ pdfgetx3 --find series/ "<900-910>.chi" --output=series-gr/@b.@o
-
    -
    -

    The extension “.@o” is automatic when not included anywhere in the -output file name. Thus to process the Pt series at Qmax = 18 Å-1 -while saving the results in the same folder, but with a “_qmax18” suffix -in their filenames do

    -
    $ pdfgetx3 --find series/ "<900-910>.chi" --qmax=18 -o series-gr/@b_qmax18
-
    -
    -

    For input file Pt_bulk_ramp03-00903.chi the -o option -above expands to output path series-gr/Pt_bulk_ramp03-00903_qmax18.gr. -The series-gr directory should now contain 12 “gr” files, -6 of them processed at Qmax = 27 Å-1 as given by configuration -file and 6 others processed at Qmax = 18 Å-1.

    -
    -

    See also

    -

    -o, --output for a list of output tokens

    -
    -
    -
    -
    -

    Interactive tuning of parameters

    -

    One of the most powerful features of PDFgetX3 is the ability to tune -PDF processing parameters in an interactive mode and immediately -visualize their effect on the results. To demonstrate this feature, -navigate to the Ni directory in the shell and process -the nickel PDF while plotting the F(Q) and G(r) curves. -Because of plotting the program will open an interactive IPython -session. The tuning mode can be then entered by calling the -tuneconfig() -function from the IPython environment

    -
    $ pdfgetx3 --plot=fq,gr ni300mesh_300k_nor_1-5.chi
-...
-In [1]: tuneconfig()
-
    -
    -

    The -tuneconfig() -function will by default add a second set of live lines -for the plotted curves and open a GUI dialog with sliders for the -tunable process parameters. Changing any slider would immediately -recalculate the PDF and update live lines in the plot.

    -_images/tunenickelfqgr.png -

    The constant data scale check-box rescales the result curves to a -constant maximum value. This is useful for assessing if a parameter -change produces different curve shape or if it just rescales the -results. The tunable parameters are described in the -PDF parameters section. -Only the active parameters are displayed in the tuneconfig GUI, -thus there would be no slider for the bgscale parameter -if PDF has been processed without any background data.

    -

    By default the -tuneconfig() -function displays the same curves as -specified by the --plot option, however it can be -configured to show arbitrary intermediate results or even visualize -selected steps in the PDF processing. We shall demonstrate this by -showing a live-plot of the polynomial correction together with the final -PDF. At first, we shall use the describe() method of the -pdfgetter() object to print out the chain of -transformations involved in the PDF processing and obtain a reference to -the transformation object t4 that applies the polynomial correction. -The transformation object can be then included in a list of plot -identifiers that are passed to the tuneconfig() function

    -
    $ pdfgetx3 -i ni300mesh_300k_nor_1-5.chi
-...
-Use "%pdfgetx3" for a fresh run without exiting IPython.
-
-In [1]: fig, ax = subplots(2)
-In [2]: pdfgetter.describe()
-0   TransformTwoThetaToQA
-    convert x data from twotheta to Q in 1/A
-1   TransformQGridRegular
-    Remove the data outside the (qmin, qmaxinst) range
-2   TransformBackground
-    subtract background intensity
-3   TransformXrayASFnormChris
-    scale and normalize intensities by x-ray scattering factors
-4   TransformSQnormRPoly
-    Normalize S(Q) by fitting a polynomial
-5   TransformSQToFQ
-    Convert S(Q) to F(Q).
-6   TransformFQgrid
-    Resample F(Q) to a regular grid suitable for FFT
-7   TransformFQToGr
-    Convert F(Q) to G(r).
-In [3]: t4 = pdfgetter.getTransformation(4)
-In [4]: tuneconfig([t4, 'gr'], axeslist=ax)
-In [5]: ax[0].legend(loc=2)
-
    -
    -

    The subplots() function above -is to create a new figure with 2 axes on top of each other. -Overall, the code above should display the following plot -and a GUI window:

    -_images/tunenickelt4gr.png -

    The tuning can be finished by clicking the Done button or closing the -tuneconfig GUI window. The parameter values can be thereafter adjusted -to a rounded values by setting an attribute of the config -object, for example:

    -
    In [5]: config.bgscale = 1.5
-
    -
    -

    Finally, to save the new results, we shall first confirm -outputtypes have been correctly set and then use the -processfiles() function to redo the calculations, plots and -data output for the updated configuration. Note that the -processfiles() function accepts keyword arguments for -configuration parameters. This is used at line In [8] to -turn on the force flag and is in effect a shortcut -for an extra config.force = True statement.

    -
    In [6]: config.outputtypes
-Out[6]: ['gr']
-In [7]: processfiles()
-WARNING:ni300mesh_300k_nor_1-5.gr already exists.
-WARNING:Use "--force=yes" or "--force=once" to overwrite.
-In [8]: processfiles(force=True)
-
    -
    -

    ni300mesh_300k_nor_1-5.gr was successfully saved at an -updated configuration for there were no warnings after the last call.

    -
    -
    -

    Neutron PDF

    -

    This example illustrates PDF extraction from -neutron powder data using pdfgetn3. -Navigate to the n-Sapphire directory in the shell. -The sapphire755.dat file contains powder diffraction data from -sapphire (α-Al2O3) -measured at the constant-wavelength PEARL instrument -at the Delft University of Technology. -The pdfgetn3.cfg configuration file specifies -processing parameters such as wavelength, -twothetazero, composition, and mode.

    -

    To extract the sapphire neutron PDF run

    -
    $ pdfgetn3 --verbose=info sapphire755.dat
-
-INFO:applying pdfgetn3 defaults
-INFO:set config.mode = neutron
-INFO:searching for default config file /home/user/.pdfgetn3.cfg
-INFO:searching for default config file .pdfgetn3.cfg
-INFO:searching for default config file pdfgetn3.cfg
-INFO:loaded default config file pdfgetn3.cfg
-INFO:reset config.twothetazero = 0.0
-INFO:parsing config file section [DEFAULT]
-INFO:set config.dataformat = twotheta
-INFO:set config.backgroundfile =
-INFO:set config.outputtypes = fq, gr
-INFO:set config.mode = neutron
-INFO:set config.wavelength = 1.0989
-INFO:set config.twothetazero = -0.38
-INFO:set config.composition = Al2O3
-INFO:set config.qmaxinst = 11.2
-INFO:set config.qmax = 11.2
-INFO:set config.rmin = 0.0
-INFO:set config.rmax = 20.0
-INFO:set config.rstep = 0.01
-INFO:finished parsing config file
-INFO:processing command line options
-INFO:set config.verbose = info
-INFO:finished with command line options
-INFO:using 1 input files from the command line.
-INFO:configuring PDFGetter mode 'neutron'
-INFO:calling config_neutron
-INFO:started PDF processing.
-INFO:processing 'sapphire755.dat'
-INFO:resolved output file '' as 'sapphire755.fq'
-INFO:written outpufile sapphire755.fq
-INFO:resolved output file '' as 'sapphire755.gr'
-INFO:written outpufile sapphire755.gr
-INFO:elapsed time: 0.097
-
    -
    -

    This will produce two files sapphire755.fq, sapphire755.gr -for the F(Q) and G(r) functions. -To compare them with expected results use

    -
    $ plotdata sapphire755-expected.fq sapphire755.fq
-$ plotdata sapphire755-expected.gr sapphire755.gr
-
    -
    -
    -
    -

    Fit twothetazero

    -

    For a good quality PDF it is essential to use powder patterns with -accurate values of Q. Some instruments may produce spectra with -a slightly offset scattering angle 2Θ which -causes inaccurate Q and a noticeably worse PDF. -In this example we fit a constant-wavelength neutron PDF from nickel -together with the twothetazero correction parameter for -diffractometer offset. -The procedure can be used to calibrate the zero correction from -a standard sample and then use it for subsequent PDF extractions. -The protocol can be also applied to fit zero correction in -a full-fledged PDF refinement in case -the zero offset may change for different samples.

    -

    This tutorial requires either Linux or Mac OS X platforms, -because the PDF fitting is conducted with -diffpy.cmi, -which is not yet available for Windows. -If diffpy.cmi is not yet installed, -we recommend to use Anaconda Python and set up a dedicated -Anaconda environment nbcmi for this tutorial. -This can be accomplished using the following steps:

    -
    $ conda create -n nbcmi -c diffpy python=2 diffpy.cmi
-$ conda activate nbcmi
-$ pip install path/to/diffpy.pdfgetx-VERSION.whl
-
    -
    -

    When these prerequisites are in place, -change to the n-twothetazero-fit directory -and open the self documented Jupyter notebook as follows

    -
    $ jupyter notebook fit-twothetazero.ipynb
-
    -
    -

    The notebook sets up and executes several PDF refinements and -compares the results from fits on uncorrected data and with -a fitted twothetazero. -After running all cells the notebook should produce similar graphs -as in the figure below.

    -
    -_images/twothetazerofit.svgz

    Refinement of nickel neutron PDF for (a) uncorrected data -and (b) with a refined zero correction. -The extracted PDFs are plotted as blue circles, -simulated PDFs as red lines and -the difference is plotted offset in green below.

    -
    -

    The final refined zero offset in the notebook should be approximately -0.36°. -The correction produces experimental PDF with a remarkably better fit -residual Rw which is lowered from (a) 0.18 to (b) 0.05.

    -
    -
    -

    Small-angle-scattering PDF (sasPDF)

    -

    Here we illustrate how to extract a PDF from small-angle-scattering (sas) data using pdfgets3. -To do this, navigate to the Au_DNA_NPA directory in your terminal. -In this folder, you will find Au_DNA_NPA.chi and -Au_DNA_FF.chi files which correspond to diffraction data from -DNA-capped Au nanoparticle assemblies and from a DNA-capped Au -nanoparticle colloidal solution respectively. Those two files were -measured at X21 beamline, NSLS and published in D. Nykypanchuk, M. M. -Maye, D. van der Lelie, and O. Gang, Nature 451, 549 (2008).. We thank Prof. Oleg Gang (Columbia University) for sharing this data. The pdfgets3.cfg -configuration file specifies processing parameters such as formfactorfile (required by sas mode), qmin, qmax, and mode.

    -

    To extract the PDF of DNA-capped DNA nanoparticle assemblies

    -
    $ pdfgets3 --verbose=info Au_DNA_NPA.chi
-
-INFO:applying pdfgets3 defaults
-INFO:set config.mode = sas
-INFO:searching for default config file /home/user/.pdfgets3.cfg
-INFO:searching for default config file .pdfgets3.cfg
-INFO:searching for default config file pdfgets3.cfg
-INFO:loaded default config file pdfgets3.cfg
-INFO:reset config.twothetazero = 0.0
-INFO:parsing config file section [DEFAULT]
-INFO:set config.dataformat = QA
-INFO:set config.backgroundfile =
-INFO:set config.datapath = []
-INFO:set config.formfactorfile = Au_DNA_FF.chi
-INFO:set config.output =
-INFO:set config.outputtypes = fq, gr
-INFO:set config.force = yes
-INFO:set config.mode = sas
-INFO:set config.rpoly = 240.605
-INFO:set config.qmaxinst = 0.075
-INFO:set config.qmin = 0.01
-INFO:set config.qmax = 0.072
-INFO:set config.rmin = 100.0
-INFO:set config.rmax = 5000.0
-INFO:set config.rstep = 1.0
-INFO:set config.plot = iq, fq, gr
-INFO:set config.verbose = info
-INFO:finished parsing config file
-INFO:processing command line options
-INFO:set config.verbose = info
-INFO:finished with command line options
-INFO:using 1 input files from the command line.
-INFO:configuring PDFGetter mode 'sas'
-INFO:calling config_sas
-INFO:started PDF processing.
-INFO:processing 'Au_DNA_NPA.chi'
-INFO:resolved output file '' as 'Au_DNA_NPA.fq'
-INFO:written outpufile Au_DNA_NPA.fq
-INFO:resolved output file '' as 'Au_DNA_NPA.gr'
-INFO:written outpufile Au_DNA_NPA.gr
-INFO:elapsed time: 0.947
-
    -
    -

    This will save two files Au_DNA_NPA.fq, Au_DNA_NPA.gr in the same directoy for the F(Q) and G(r) functions. This also plots F(Q) and G(r) functions in a pop-up window and the processing parameters such as rpoly or so may be tuned interactively by issuing command tuneconfig() in the IPython session as discussed above.

    -
    -
    - - -
    -
    -
    - -
    -
    -
    -

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The configuration file follows a simple "varname=value" syntax, -any lines starting with "#" are ignored as comments. - -The configuration file has several sections marked as ``[SECTIONNAME]``. -The ``[DEFAULT]`` section is mandatory and it contains the default -global settings. Any other sections are optional and they are applied -only when selected with the :option:`-s, --section <-s>` option on the -command line. Thus :: - - pdfgetx3 --config=test.cfg --section=nacl - -would read the parameters from the ``[nacl]`` section after reading the -defaults. Having several sections in the configuration -file is useful when there are multiple measurements that share most of -the parameters, but differ in a few of them, for example in chemical -composition. The configuration file can then contain sections per each -sample that define only the composition, while all other parameters are -specified just once in the global DEFAULT section. - - -Input files ------------------------------------------------------------------------- - -PDFgetX3 and PDFgetN3 accept input powder diffraction data -in the form of two-column text file, -where the first column x is either the scattering angle -|twotheta| in degrees, momentum transfer *Q* in inverse nanometers or *Q* -in inverse ångströms. The second column y contains the corresponding -scattered intensities normalized per unit solid angle. The actual type -of the x-values is identified by the :confval:`dataformat` parameter. -The input files may contain header with comments or metadata, and the -actual data are read from the first long section of numerical values. - -The input files are usually passed as command-line arguments to -:program:`pdfgetx3` or :program:`pdfgetn3` programs and must be paths -accessible from the current working directory. - -Input files can be also defined by setting the :confval:`inputfile` -value in the configuration file. The :option:`-d, --datapath <-d>` -option can be then used to provide additional data directories to -search for these inputs and for the :confval:`backgroundfile`. -This is to support configuration files located in a different -directory than the data. - -When the :option:`--find <-f>` option is active, the pdfgetx3 arguments -are understood as filename patterns and the input files are found -in the current or specified directory. - - -Output files ------------------------------------------------------------------------- - -PDFgetX3 and PDFgetN3 can produce up to four different output data files: - -* .iq -- |IQ|, the background-corrected - intensities sampled on a regular *Q*-space grid in inverse ångströms, - -* .sq -- |SQ|, the total scattering structure function, - with intensities normalized by average scattering factors and - corrected by a polynomial fit, - -* .fq -- |FQ|, the reduced structure function equal to *Q*\ (|SQ| - 1), - -* .gr -- |Gr|, the resultant PDF, where the first column is the - separation *r* in ångströms and the second is the function *G* in - Å\ :sup:`-2`. - -You can specify what output files should be produced by setting the -:confval:`outputtypes` parameter in the configuration file or by -passing the :option:`-t, --outputtypes <-t>` on the command line. - -The header of all output files contains the parameter values that were -used in the calculation and thus it is by itself a valid configuration -file. When passed as an argument to the :option:`--config <-c>` option, -the PDFgetX3 will reproduce the previous calculation. diff --git a/static_root/doc/pdfgetx/2.2.0/_sources/index.rst.txt b/static_root/doc/pdfgetx/2.2.0/_sources/index.rst.txt deleted file mode 100644 index c7bf373e..00000000 --- a/static_root/doc/pdfgetx/2.2.0/_sources/index.rst.txt +++ /dev/null @@ -1,38 +0,0 @@ -.. PDFgetX3 documentation master file, created by - sphinx-quickstart on Tue Sep 21 18:35:11 2010. - You can adapt this file completely to your liking, - but it should at least contain the root `toctree` directive. - -######################################################################## -diffpy.pdfgetx -######################################################################## - -User manual for PDFgetX3, PDFgetN3, PDFgetS3 and Python package diffpy.pdfgetx. - -| Release |release| -| |today| - -======================================================================== -Table of contents -======================================================================== - - -.. toctree:: - :maxdepth: 2 - - intro - install - quick-start - tutorial - files - interact - options - plotdata - release - -======================================================================== -Indices -======================================================================== - -* :ref:`genindex` -* :ref:`search` diff --git a/static_root/doc/pdfgetx/2.2.0/_sources/install.rst.txt b/static_root/doc/pdfgetx/2.2.0/_sources/install.rst.txt deleted file mode 100644 index 667637dd..00000000 --- a/static_root/doc/pdfgetx/2.2.0/_sources/install.rst.txt +++ /dev/null @@ -1,146 +0,0 @@ -Installation -======================================================================== - -.. include:: abbreviations.txt - -Software requirements ------------------------------------------------------------------------- - -This software is written in Python programming language, therefore -you must have Python 3.10, 3.9, 3.8, 3.7 or 2.7 installed. In addition, -the following third-party Python libraries are also required: - -* pip - Python package installer -* setuptools - tools for installing Python packages -* six - Python 2 and 3 compatibility library -* NumPy - library for scientific computing with Python -* matplotlib - Python plotting library -* IPython - enhanced interactive Python shell - -Standard Python releases can be obtained from -https://www.python.org/downloads. -The third-party libraries can be found at the -`Python Package Index `__ -or using any Internet search engine. - -Another more convenient option is to obtain one of the science-oriented -Python distributions such as -`Anaconda Python`_, -`Enthought Canopy `_ or -`PythonXY `_, -These distributions already include all the necessary libraries, so the -required Python software can be all installed in one step. - -On Linux operating systems the third-party libraries are usually -included in a system software repository. For example on an -Ubuntu Linux computer the software dependencies can be all installed -with a single shell command :: - - sudo apt-get install \ - python3-pip python3-setuptools python3-six \ - python3-numpy python3-matplotlib ipython3 - -This may be, of course, as well accomplished using the GUI -driven Synaptic package manager. Other Linux -distributions may use different software management tools, -but the names of the necessary packages should be very similar -to those above. - -On Windows operating system, it may be necessary to add the -``C:\Python37`` directory and the scripts directory -``C:\Python37\Scripts`` to the system :envvar:`!PATH`. Some Python -distributions already do so as a part of their installation process. The -easiest way to check is to start the :program:`Command Prompt`, type -there ``python`` and see if this starts the Python interpreter. - -Alternately, if you want to run the diffpy.pdfgetx software with a specific version of Python, -we recommend using a virtual environment, such as ``conda``. For example, if you have Anaconda Python installed, -you can create a conda virtual environment to install the software as follow :: - - conda create --name pdfgetx_env python=3.8 numpy matplotlib ipython - -You can choose the name of the environment and python version as you desire. You can choose any of the -supported Python versions. Then, activate this environment and follow the instructions in the -next section to install the software :: - - conda activate pdfgetx_env - -Installation ------------------------------------------------------------------------- - -The diffpy.pdfgetx software is distributed as a Python wheel file, -which can be obtained from the -`Columbia Technology Ventures -`__. -Once all the required software is in -place, start the command prompt on Windows or a Unix terminal on Linux -or Mac, navigate to the directory that contains the wheel file and -execute the following command:: - - pip install ./diffpy.pdfgetx-VERSION.whl - -Here VERSION needs to be replaced to match the actual filename. It is -critical that pip installer is from a supported Python version otherwise -the program would not work. On Linux and Mac operating systems the installation may need to run with root user privileges, for example, by prepending ``sudo`` to the command line above. If root access is not available, use the ``pip install`` options :option:`!--user` or :option:`!--prefix` to install the software to a user-writable directory. - -The package provides three programs for PDF conversion, :program:`pdfgetx3`, :program:`pdfgetn3` and :program:`pdfgets3`. To check if they are correctly installed run :: - - pdfgetx3 --version - pdfgetn3 --version - pdfgets3 --version - -This should display the software version, which should agree -with the VERSION string in the wheel package name. -The installation also includes a :program:`plotdata` -command for an easy plotting of text data files. To verify -if plotdata works, run the ``plotdata --version`` command. -Finally, a comprehensive test of the installed software can -be executed using :: - - python -m diffpy.pdfgetx.tests.run - -.. note:: - - Older versions of diffpy.pdfgetx use Python egg format - instead of Python wheel. - To install these use the easy_install command as follows:: - - python -m easy_install ./diffpy.pdfgetx-VERSION.egg - -.. index:: %pdfgetx3 IPython magic -.. index:: %pdfgetn3 IPython magic -.. index:: %pdfgets3 IPython magic - -IPython magic command ------------------------------------------------------------------------- - -These instructions are intended for `IPython`_ users who would like to -integrate PDFgetX3, PDFgetN3 and PDFgetS3 into their IPython environment. If -you don't plan to customize IPython in such way you can safely skip -this paragraph. - -When pdfgetx3 or pdfgetn3 or pdfgets3 is run in interactive mode, it start -IPython interactive shell and define an extra ``%pdfgetx3``, ``%pdfgetn3`` and ``%pdfgets3`` magic commands within the IPython session. The IPython -magic commands are not valid Python code, but work in a similar -fashion as standard shell commands. The ``%pdfgetx3``, ``%pdfgetn3`` and ``%pdfgets3`` magics can be thus used with the same options and arguments as if run from the shell. This is useful for processing more files, while -preserving all plots or variables that were already created -in an IPython session. - -The ``%pdfgetx3``, ``%pdfgetn3`` and ``%pdfgets3`` magic commands can be defined -permanently so they are available in all IPython sessions. To set -this up - -#. find the ``profile_default/ipython_config.py`` file and open it - in a text editor. If that file does not exists, - create it first by executing :: - - ipython profile create - -#. navigate to the paragraph that contains the - :py:data:`!c.InteractiveShellApp.extensions` and add there - the following line :: - - c.InteractiveShellApp.extensions = ['diffpy.pdfgetx.ipy_magics'] - - There must be no leading indent, i.e., the text must start at the - very first column. diff --git a/static_root/doc/pdfgetx/2.2.0/_sources/interact.rst.txt b/static_root/doc/pdfgetx/2.2.0/_sources/interact.rst.txt deleted file mode 100644 index 0d4fb746..00000000 --- a/static_root/doc/pdfgetx/2.2.0/_sources/interact.rst.txt +++ /dev/null @@ -1,154 +0,0 @@ -Interactive mode -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 -.. py:currentmodule:: _interactive_ - -The interactive mode is activated by using either the -:option:`-i, --interact <-i>` option or a non-empty -:option:`--plot <-p>` option. In the interactive mode -the program starts an `IPython`_ interactive shell and pre-loads several -functions and variables related to the PDF calculation. It also defines -IPython commands ``%pdfgetx3`` and ``%pdfgetn3``, which can be used with -the same syntax as the :program:`pdfgetx3` and :program:`pdfgetn3` in -system shell. -The interactive session is also initialized with all functions from the -:py:mod:`matplotlib.pyplot` module for convenient plotting. -The functions and variables related to PDF processing are: - -.. py:function:: pdfgetter(x=None, y=None, filename='', **kwargs) - - Instance of the :py:class:`!PDFGetter` class which serves as a - low-level function that calculates the PDF. This is a callable - object, which takes as an argument a pair of input arrays for - (*Q*, intensity) or (|twotheta|, intensity) depending on - :confval:`dataformat`. It can be also called with a keyword - argument ``filename=FILE``, which would read the input arrays - from the specified file. When called with no arguments, - it calculates PDF from the last input data. - - :parameters: - * **x** (*numpy.ndarray, optional*) -- - The *Q* or |twotheta| values in powder diffraction pattern. - - * **y** (*numpy.ndarray, optional*) -- - The scattered intensities in powder diffraction pattern - - * **filename** (*str, optional*) -- - The text data file for loading the `x`, `y` values when - they are not specified. - - * **kwargs** (*misc, optional*) -- - Extra keyword arguments that are applied to - the :data:`!config` object, for example ``qmax=20``. - - :return: - A pair of output arrays *(r, G)*. - -.. interactvar:: config - - Instance of the :py:class:`!PDFConfig` class that stores the - :ref:`parameters and input files ` for the program. - Use ``print(config)`` to display the current configuration values. - This is the same object as :data:`!pdfgetter.config`. Configuration - may be changed by setting a respective attribute of the - :interactvar:`!config` object, for example:: - - In [1]: config.qmax = 21 - - The :py:data:`!config` values may be also changed by calling the - :py:func:`pdfgetter` or :py:func:`processfiles` function with a - corresponding keyword argument, for example - ``processfiles(qmax=20, force="once")``. - -.. interactvar:: iraw - iq - sq - fq - gr - - These variables are assigned the input raw intensities and the - intermediate results, stored as matrix rows. The matrix rows - correspond to twotheta1, intensity1, twotheta2, intensity2, etc. - Because matrices are iterated row first, the raw intensities - from all input files can be plotted with the matplotlib plot - function as ``plot(*iraw)``. - - These variables should be considered read-only and are reset - with subsequent PDF calculations. - -.. py:function:: tuneconfig(plotids=None, pdfgetter=None, axeslist=None) - - Show a GUI dialog for interactive tuning of configuration variables. - - :arg plotids: - The string or iterable that specify what interactive plots should be - tuned. By default the same as ``config.plot``. It can be also an - integer index or name of a transformation in :py:func:`pdfgetter` or - a reference to a :py:class:`!Transformation` object. - - :arg pdfgetter: - The optional :py:class:`!PDFGetter` object to be tuned. - This is by default the interactive :py:func:`!pdfgetter` object. - - :arg axeslist: - An optional list of matplotlib Axes for showing interactive plots. - When None, use ``subplot(N, 1, i)`` to create any necessary axes. - - .. note:: - - Changes from :py:func:`!tuneconfig` apply only to the configuration - and results in memory. Use the :py:func:`processfiles` function - to save them to disk. - - .. seealso:: :ref:`my-tuneconfig` tutorial - -.. py:function:: processfiles(filename=None, **kwargs) - - Process all input files again with the current configuration values. - This is a higher-level function than :py:func:`pdfgetter`, as - it also saves output files and produces plots as specified by the - :interactvar:`config` object. - - :arg filename: - One or more input files to be converted to PDFs and saved or - plotted according to the :py:data:`!config` settings. Use the - previous list of input files when not specified. - - :arg kwargs: - An optional keyword arguments to set for the :py:data:`!config` - object, for example ``(force="once", qmax=18)``. - - This function updates the :interactvar:`config.inputfiles ` - list and the :interactvar:`iraw`, :interactvar:`iq`, - :interactvar:`sq`, :interactvar:`fq` and :interactvar:`gr` - interactive variables. - -.. py:function:: clearsession() - - Clear all elements from the :interactvar:`config.inputfiles ` - and also the - :interactvar:`iraw`, :interactvar:`iq`, :interactvar:`sq`, - :interactvar:`fq` and :interactvar:`gr` variables. - - :return: - No return value. - -.. py:currentmodule:: diffpy.pdfgetx -.. autofunction:: loaddata - - This function can be imported from the - :py:mod:`!diffpy.pdfgetx` module. - -.. py:currentmodule:: diffpy.pdfgetx.plotdata -.. autofunction:: plotdata - - This function can be imported from the - :py:mod:`!diffpy.pdfgetx.plotdata` module. - -.. py:currentmodule:: diffpy.pdfgetx -.. autofunction:: findfiles - - This function can be imported from the - :py:mod:`!diffpy.pdfgetx` module. diff --git a/static_root/doc/pdfgetx/2.2.0/_sources/intro.rst.txt b/static_root/doc/pdfgetx/2.2.0/_sources/intro.rst.txt deleted file mode 100644 index a97972cd..00000000 --- a/static_root/doc/pdfgetx/2.2.0/_sources/intro.rst.txt +++ /dev/null @@ -1,71 +0,0 @@ -Introduction -======================================================================== - -diffpy.pdfgetx is a simple yet powerful software for converting X-ray or -neutron powder diffraction data to atomic Pair Distribution Functions -(PDFs). In addition, it also allows the extraction of PDFs from small-angle -scattering (SAS) data. The software includes three command line programs -PDFgetX3, PDFgetN3 and PDFgetS3 for processing X-ray, -constant-wavelength neutron and small-angle diffraction data -respectively. PDFgetX3, PDFgetN3 and PDFgetS3 can be used in a batch -mode to convert a series of data files without user intervention. The -programs can be also run in an interactive mode that allows to control -process parameters and plot the PDFs and any intermediate results. Users -can interactively tune the PDF processing parameters, visualize their effect on the results and adjust them to their optimum values. The programs are bundled with Python library diffpy.pdfgetx for PDF processing functions, which can be used in custom Python scripts. - - -.. index:: license - -License notice ------------------------------------------------------------------------- - -.. include:: ../../LICENSENOTICE.txt - - -.. index:: authors - -Authors ------------------------------------------------------------------------- - -This code was written by members of the Billinge Group at -Columbia University and Brookhaven National Laboratory including -Pavol Juhás, -Timur Davis, -Chia-Hao (Timothy) Liu, -Christopher Wright, -Christopher Farrow, -Connor J. Bracy, -Hung Vuong, -Songsheng Tao, -Simon Billinge. - - -.. index:: citations, references - -References ------------------------------------------------------------------------- - -If you use this program for a scientific research that leads -to publication, we ask that you acknowledge use of the program -by citing the following paper in your publication: - - P. Juhás and T. Davis, C. L. Farrow, S. J. L. Billinge - `PDFgetX3: A rapid and highly automatable program for processing - powder diffraction data into total scattering pair distribution - functions `__, - *J. Appl. Crystallogr.* **46**, 560-566 (2013) - -For research publications that use this software to process neutron -diffraction data we ask you to also cite: - - P. Juhás, J. N. Louwen, L. van Eijck, E. T. C. Vogt, - S. J. L. Billinge - `PDFgetN3: atomic pair distribution functions from neutron - powder diffraction data using ad hoc corrections - `__, - *J. Appl. Crystallogr.* **51** (2018) - -For research publications utilising the sasPDF utility, PDFGetS3, we ask you to acknowledge the use of the program by citing following paper in your publication: - - CH Liu, E. Janke, R. Li, P. Juhás, O. Gang, D. V. Talapin, S. J. L. Billinge - `sasPDF: pair distribution function analysis of nanoparticle assemblies from small-angle-scattering data `__. diff --git a/static_root/doc/pdfgetx/2.2.0/_sources/options.rst.txt b/static_root/doc/pdfgetx/2.2.0/_sources/options.rst.txt deleted file mode 100644 index c02220f2..00000000 --- a/static_root/doc/pdfgetx/2.2.0/_sources/options.rst.txt +++ /dev/null @@ -1,370 +0,0 @@ -Options and parameters -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 - -PDFgetX3, PDFgetN3 and PDFgetS3 are very flexible in allowing users to customize -the actions of the program. They have a number of parameters that can -be specified either in configuration file or as command line options. -Here is a complete description of the parameters and options used by -either program. - - -.. Note :: - - The command line options start with a leading "-" and can - be only used as command line arguments when starting the - :program:`pdfgetx3` program. Within configuration file the parameter - names are plain words without any leading dashes. Finally, - parameters can be also set in the interactive mode as attributes of - the :interactvar:`config` object, but the assignments must be valid - Python statements. Here are examples of setting composition of - a processed specimen using each of these forms: - - #. assigned in configuration file:: - - ... - composition = CaTiO3 - ... - - #. set as a command-line option when starting :program:`pdfgetx3` or - :program:`pdfgetn3`:: - - pdfgetx3 --composition=CaTiO3 - - #. set in the IPython interactive mode:: - - pdfgetx3 -i - ... - In [1]: config.composition = "CaTiO3" - - -Program operation ------------------------------------------------------------------------- - -.. option:: -h, --help - - Display a brief usage information with a list of command line options - and exit. - -.. option:: -V, --version - - Display the program version and exit. - -.. option:: --manual - - Open this manual in a Web browser and exit. - -.. option:: -f, --find -.. _my-findpatterns: - - Select input files that match all patterns. The command - line arguments are by default taken as input files. However, - with the :option:`!--find` option they are processed as - file patterns and the matching files are then used as inputs. - The input files are by default searched in the current directory - unless there is a path entry (e.g., :file:`data/`) that - selects a different search path. The search patterns are - interpreted as fixed strings, all of which must be present - in the file name. A single argument ``+`` starts - a new group of patterns to match more files that are not - covered by one set of patterns. Additional pattern - groups reuse the current search path unless they provide - their own path value. Pattern groups containing only - a path entry reuse file patterns from the last group. - When pattern groups overlap the repeated matches are ignored - to make the resulting list of files unique. Files starting - with ``.`` are ignored unless there is ``^.`` pattern - that explicitly matches them. The search - syntax provides the following special patterns: - - .. tabularcolumns:: |l|p{0.75\textwidth}| - - +---------+------------------------------------------------------------+ - | ^ | match at the beginning of the string, i.e., ``^start`` | - | | matches only filenames that start with "start". | - +---------+------------------------------------------------------------+ - | $ | match at the end of string, for example, ``.chi$`` selects | - | | file names ending with ".chi". A ``$`` on its own | - | | matches every string and can be used to select all files. | - +---------+------------------------------------------------------------+ - | | match number *N* preceded by any number of leading zeros, | - | | e.g., ``<7>`` would match in "f7.chi", "f007.chi", but not | - | | in "f77.chi". | - +---------+------------------------------------------------------------+ - | | match an integer range from *N* to *M* inclusive. | - | | The matched number may have one or more leading zeros. | - +---------+------------------------------------------------------------+ - | <7-> | match number 7 or larger. | - +---------+------------------------------------------------------------+ - | <-7> | match number 7 or smaller. | - +---------+------------------------------------------------------------+ - | <-> | match any integer number. | - +---------+------------------------------------------------------------+ - | \+ | start a new pattern group, for example, ``.chi$ + .dat$`` | - +---------+------------------------------------------------------------+ - | / | set search path. An argument containing the ``/`` symbol | - | | is taken as the search path, for example, ``data/`` or | - | | ``./``. Each pattern group may provide its own search | - | | path effective for that and any subsequent pattern group. | - +---------+------------------------------------------------------------+ - - The ``^$<>`` characters are often special to Unix or Windows - command shells, therefore they need to be enclosed in double - quotes (\\") when used on command line. - - .. seealso:: tutorial on :ref:`my-findexamples` - -.. option:: -l, --list - - List all input files and exit. This is useful with the - :option:`!--find` option to verify if input files - are matched as intended. - - -Configuration file options ------------------------------------------------------------------------- - -.. option:: -c CONFIG, --config=CONFIG - - Read custom configuration file after loading the default ones. - Do not load any configuration file when "NONE". - -.. option:: -s NAME, --section=NAME - - Load the custom configuration file section ``[SectionName]`` after - loading the ``[DEFAULT]`` section. This is useful for creating - several configuration variants in a single configuration file. - -.. option:: --createconfig=FILE - - Write template configuration to a new FILE and exit. Write - to the standard output when FILE is "-". - -See also the :ref:`configuration file ` section -for further details. - -.. _my-ioparameters: - -Input and output options ------------------------------------------------------------------------- - -.. confval:: inputfile - - This parameter allows to specify one or more input files in the - configuration file, one file per line. The :confval:`!inputfile` - is only used if no input files were provided on the - :program:`pdfgetx3` or :program:`pdfgetn3` command line. - -.. confval:: dataformat -.. option:: --format=FORMAT - - Format of input files. Available formats are: ``twotheta``, ``QA``, - ``Qnm`` corresponding to a two-column text data where the first - column is either the scattering angle |twotheta| in degrees, *Q* in - inverse ångströms or *Q* in inverse nanometers. - -.. confval:: backgroundfile -.. option:: -b FILE, --background=FILE - - Optional datafile with background intensities from an empty sample - holder. It must be in the same dataformat as other input files. - -.. Note :: - - The following input is only used in ``sas`` mode. - -.. confval:: formfactorfile -.. option:: -ff FILE, --formfactorfile=FILE - - Form factor intensities of the scatterers. This is required for ``sas`` mode. The form factor file is expected to be in two-column format with (Q, f2avg) data or three-column format with (Q, f2avg, favg2) data. The unit of Q is required to be A^-1. - -.. _my-datapath: -.. confval:: datapath -.. option:: -d DATAPATH, --datapath=DATAPATH - - One or more extra directories to be searched for input or - background data files. The :option:`!-d` option can be specified - several times to add more directories, these are prepended in front - of any default value. Within configuration file the datapath - directories have to be listed each on a separate line. - - A special value "NONE" (or "none") clears any previously defined - paths and only the further paths, if any, would be searched for - inputs. - -.. confval:: output -.. option:: -o OUTPUT, --output=OUTPUT - - Output file name, write to the standard output when "-". The - :option:`-t, --outputtypes <-t>` option controls what results are - being saved. Normally the OUTPUT is used as a custom basename for - the output files. The OUTPUT may contain @f, @h, @r, @e, @t, @b, @o - tokens, which are expanded as follows: - - ===== ================== ======================================= - token example definition - ===== ================== ======================================= - @h dir1/dir2 the input file directory or "." - @r dir1/dir2/filename the input path with extension removed - @e dat the input file extension without "." - @t filename.dat the tail component of the input file - @b filename the tail component with extension removed - @o gr the output extension iq, sq, fq or gr - ===== ================== ======================================= - - An empty value works the same as "@b.@o" and saves the data - in the current directory with a proper extension for the - saved results. When "@o" is not present in the OUTPUT, it is - appended as a default filename extension. - -.. confval:: outputtypes -.. option:: -t TYPES, --outputtypes=TYPES - - Result types to be saved, one or more comma separated values. - Supported values are "iq", "sq", "fq", "gr", corresponding to the - |IQ|, |SQ|, |FQ| and |Gr| curves; these are also used as output - file extensions. - - Result files are not written when empty, "none" or "NONE". - -.. confval:: force -.. option:: --force=FORCE - - Overwrite existing output files. By default the output - files are not written if they already exist. Possible values - in a configuration file are "true", "yes", "on", "1" or - "false", "no", "off", "0" or "once". The special value "once" - permits one overwrite and then resets ``config.force`` to - ``False``. Note that in interactive mode the values assigned - to ``config.force`` are converted to Python :py:class:`bool` - unless equal to "once". - - -.. _my-pdfparameters: - -PDF parameters ------------------------------------------------------------------------- - - -.. confval:: mode -.. option:: --mode=STRING - - The PDF conversion mode, i.e., the name of the - :py:func:`.pdfgetter` setup. The available modes correspond - to the radiation type used in powder diffraction experiment and can - be "xray" or "neutron". - -.. confval:: wavelength -.. option:: -w FLOAT, --wavelength=FLOAT - - X-ray wavelength in ångströms. This value is required - for the "twotheta" dataformat in order to convert the scattering - angles |twotheta| to a momentum transfer *Q*. For other data formats - the wavelength is not necessary and may be left undefined. - -.. confval:: twothetazero -.. option:: --twothetazero=FLOAT - - Position of the zero scattering angle in diffractometer degrees. - This parameter corrects for a constant offset in the - measured |twotheta| values. When loading configuration file - it is assumed 0 unless specified otherwise. This parameter - is only effective for the "twotheta" dataformat. - -.. confval:: composition -.. option:: --composition=STRING - - Chemical composition of the sample. Supported formats are - "PbTi0.5Zr0.5O3", "Pb 1 Ti 1/2 Zr 1/2 O 3" or "CH3 (CH2)3 OH". - Space characters are ignored, unit counts can be omitted, but it is - important to use a proper upper and lower case in atom symbols. - Elements can appear several times in the formula, e.g., "CH3 CH3", - and the formula may contain parentheses or fractional - stoichiometries. - -.. confval:: bgscale -.. option:: --bgscale=FLOAT - - Scaling of the background intensities loaded from the - :confval:`backgroundfile`, by default 1. - -.. confval:: rpoly -.. option:: --rpoly=FLOAT - - *r*-limit for the maximum frequency in the |FQ| correction polynomial. - The PDF is unreliable at shorter *r*, however a - very small :confval:`!rpoly` would disable polynomial correction and - give noisy PDF. - Larger values produce closer fits with a higher degree polynomial, - but when too large, they might smooth-out a useful signal in the - data. The default is 0.9. - -.. confval:: qmaxinst -.. option:: --qmaxinst - - The *Q* cutoff for the meaningful input intensities in inverse - ångströms. Some data files may contain trailing zeros - or unreliable intensities at the upper bound of the detector range. - The :confval:`!qmaxinst` defines a threshold for unreliable data. - The parameter is also used as an upper boundary for the polynomial - fit correction of the |SQ| data. - -.. confval:: qmin -.. option:: --qmin - - The lower *Q*-limit for the Fourier transformation of the |FQ| curve - in inverse ångströms. - -.. confval:: qmax -.. option:: --qmax - - The upper *Q*-limit for the Fourier transformation of the |FQ| curve - in inverse ångströms. This is essentially a limit, where sample - signal decays to the level of data noise. - -.. confval:: rmin -.. option:: --rmin=FLOAT - - Lower bound of the *r*-grid for the calculated PDF in ångströms. - -.. confval:: rmax -.. option:: --rmax=FLOAT - - Upper bound of the *r*-grid for the calculated PDF in ångströms. - -.. confval:: rstep -.. option:: --rstep=FLOAT - - Spacing of the *r*-grid for the calculated PDF in ångströms. - - -Other parameters ------------------------------------------------------------------------- - -.. confval:: plot -.. option:: -p TYPES, --plot=TYPES - - Plot the specified results. A comma separated list with one or - more items from "iq", "sq", "fq", "gr". No plot is produced when - empty, "none" or "NONE". Setting this option turns on the - interactive mode. - -.. confval:: interact -.. option:: -i, --interact - - Start an IPython interactive session after processing all files. - Useful for tuning the configuration parameters or interactive - plotting. This is always on when plot option has been set. - See also :doc:`interact` for further details. - -.. confval:: verbose -.. option:: --verbose=VALUE - - Level of detail for the program to report about its actions. - Possible values are "error", "warning", "info", "debug", "all" or an - integer number from 0 to 5. Messages are completely suppressed when - 0, all messages are printed when verbose is 5 ("all") or higher. - This option is useful for diagnostics of any unexpected behavior - in the program. diff --git a/static_root/doc/pdfgetx/2.2.0/_sources/plotdata.rst.txt b/static_root/doc/pdfgetx/2.2.0/_sources/plotdata.rst.txt deleted file mode 100644 index d1c02156..00000000 --- a/static_root/doc/pdfgetx/2.2.0/_sources/plotdata.rst.txt +++ /dev/null @@ -1,161 +0,0 @@ -.. index:: plotdata (program) -.. _cmd-plotdata: - -The plotdata program -======================================================================== - -.. include:: abbreviations.txt -.. program:: plotdata - -The PDFgetX3 software includes a simple stand-alone utility -:program:`plotdata` for plotting text data files. In most cases -this program can be invoked from a command-shell as :: - - plotdata file1.dat file2.dat - -which plots the numerical data from the text files :file:`file1.dat`, -:file:`file2.dat` together in a single graph. By default the first -column is used as an *x* variable and the second column is used for the -*y* values. After displaying the plot the program starts an `IPython`_ -interactive session allowing the user to modify or save plots. The -IPython session is initialized with the :data:`!filenames` variable -containing a list of plotted files. It also pre-loads the -|plotdata| and |findfiles| functions just as in PDFgetX3 -interactive session. The :py:func:`!plotdata` -function works in a similar way as the :program:`plotdata` program, -just its arguments need to be passed as Python function arguments -instead of command-line options. Thus an equivalent call of the -:py:func:`!plotdata` function would be:: - - In [1]: plotdata(['file1.dat', 'file2.dat']) - - -Selecting files ------------------------------------------------------------------------- - -The :program:`plotdata` program includes a file searching feature -that is useful for selecting a set of files in large -directories. It is also convenient for Windows operating systems, -where the command prompt cannot do filename expansion for patterns -such as ``*.dat``. The file search feature is controlled by the -following options: - -.. option:: -f, --find - - Use command line arguments as filename patterns and plot all matching - files. This option works in the same way as for - :program:`pdfgetx3`, for full details see the - :option:`pdfgetx3 --find ` documentation. Note that - within command line the special patterns ``^$<>`` need to be quoted - in double quotes (\\") so they are not processed by command shell. - -.. option:: -l, --list - - List the input files and exit. This is useful in conjunction - with the :option:`!-f, --find` option to check if data files - are selected as intended. - -Assuming the current directory contains 20 files named -:file:`file1.dat`, :file:`file2.dat`, ..., :file:`file20.dat`, -the plotting of files 9 to 13 could be done (with a check listing) -as follows :: - - $ plotdata -fl "<9-13>.dat" - file9.dat - file10.dat - file11.dat - file12.dat - file13.dat - $ plotdata -f "<9-13>.dat" - -Within an interactive IPython session the equivalent plot could be -produced by combining the |plotdata| and |findfiles| functions as :: - - In [1]: plotdata(findfiles("<9-13>.dat")) - - -Selecting x and y data ------------------------------------------------------------------------- - -The :program:`plotdata` program provides several ways of selecting -columns for *x* or *y* data and for specifying plot markers or line -formats. The columns can be specified using their integer index, -but one needs to keep in mind the index of the first column is "0" -as per Python indexing conventions. Here is a list of options -supported by the plotdata program (and function): - - -.. option:: -x X - - index or name of the *x*-column to plot. See the :option:`-y` option - for the supported syntax, but note that ``X`` may select only one - column. When set to "." use the data-row index for *x*. - -.. option:: -y Y - - index or name of the *y*-column or columns to plot. The ``Y`` column - specification can be a comma separated list of indices, column names - or Python-like ranges, for example "1,2", "G", "1:4" (START:STOP, - same as "1,2,3"), "1:4:2" (START:STOP:STEP, same as "1,3"), or - "-2:" (same as "-2,-1", i.e, the last 2 columns). Because column - indexing starts at "0" the second column must be specified as "1". - - The column names work if the data section in the file is preceded by - a headline of unique column names, for example:: - - x square cube - 1 1 1 - 2 4 8 - 3 9 27 - 4 16 64 - - For such data file the plotdata program will recognize column names - "x", "square" and "cube" and an implicit "." for row index. - -.. option:: -s STYLE, --style=STYLE - - optional plot format specification. See the - :func:`matplotlib.pyplot.plot` function - for a list of available formats. - -.. option:: -L LOG, --log=LOG - - axes to be plotted with logarithmic scaling, for example, "x", "y" or - "xy". Axes not listed in ``LOG`` will use linear scaling. - -.. option:: -h, --help - - display a brief usage info and exit. - -.. option:: -V, --version - - show program version and exit. - -.. option:: --manual - - Open this manual page in a Web browser and exit. - - -Examples ------------------------------------------------------------------------- - -The examples directory :file:`plotdata` contains a :file:`sincos.dat` -file that has 3-columns of values labeled as "x", "sin" and "cos". -Here are several examples of the :program:`plotdata` capabilities -when used from command line - the user is encouraged to try them out:: - - plotdata sincos.dat - plotdata -y 1,2 sincos.dat - plotdata -x . -y 0:3 sincos.dat - plotdata -y cos sincos.dat - plotdata -x sin -y cos -sr-- sincos.dat - -An equivalent usage from a general IPython session would be:: - - ipython --matplotlib=auto - In [1]: from diffpy.pdfgetx.plotdata import plotdata - In [2]: plotdata('sincos.dat') - In [3]: plotdata('sincos.dat', y=[1,2]) - In [4]: plotdata('sincos.dat', x='.', y=':3') - In [5]: plotdata('sincos.dat', y='cos') - In [6]: plotdata('sincos.dat', x='sin', y='cos', style='r--') diff --git a/static_root/doc/pdfgetx/2.2.0/_sources/quick-start.rst.txt b/static_root/doc/pdfgetx/2.2.0/_sources/quick-start.rst.txt deleted file mode 100644 index 0b2fffd1..00000000 --- a/static_root/doc/pdfgetx/2.2.0/_sources/quick-start.rst.txt +++ /dev/null @@ -1,163 +0,0 @@ -Quick-start guide -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 - -This guide assumes that the software has been correctly installed and -its command line programs PDFgetX3, PDFgetN3 and PDFgetS3 can be -executed by typing :program:`pdfgetx3`, :program:`pdfgetn3`, or -:program:`pdfgets3` in a shell window. Please, refer to the :doc:`installation ` section if this is not working yet. - -.. index:: pdfgetx3 (program) -.. _cmd-pdfgetx3: - -pdfgetx3 command ------------------------------------------------------------------------- - -The pdfgetx3 program is a command-line application, therefore all -the input files and run-parameters are supplied either as command-line -arguments or through a configuration file. In general, the pdfgetx3 is -executed from a command shell as :: - - pdfgetx3 [options] input1 input2 ... inputN - -The :file:`inputN` stands for an input powder diffraction data. The -:file:`inputN` file is a simple two-column text file, where the first -column corresponds to either the |twotheta| diffraction angle, or a -momentum transfer, *Q*, in inverse nanometer or inverse ångström units. -The second column contains the corresponding X-ray intensities. The -input file may start with a header containing comments or metadata -related to the measurement. PDFgetX3 will ignore any text leading to a -long two-column section. The example input files in this manual were -created with the -`FIT2D program `_ using -its "chi" output format, thus we will also refer to them as "chi-files". -A typical content of a "chi" file looks as folows: - -.. code-block:: none - - Pt_bulk-00055.tif: 2-theta Scan - 2-Theta Angle (Degrees) - - 1465 - 2.0003892E-02 0.0000000E+00 - 6.0011677E-02 0.0000000E+00 - 1.0001946E-01 0.0000000E+00 - 1.4002724E-01 0.0000000E+00 - 1.8003502E-01 0.0000000E+00 - ... - -The command-line options are arguments that start with a dash "-" and -are used to specify run-parameters or modify the program behavior. The -options can be specified in a short form that consists of a dash and -a single character, or in a long, more descriptive format starting with -a doubled dash ``--``. Options may require values. For short options, -the value may be joined to the option string, for example -:option:`!-w0.142774`, while for the long options it has to be separated -with an equal sign, e.g., :option:`!--wavelength=0.142774`. Although -all the PDF calculation parameters can be passed as command line -options, it is often more convenient to set them in a configuration -file. When run parameter is present both in a configuration file and -as command-line option, the command-line value takes precedence. The -command-line options are all described in the :doc:`options` section of -this manual. A brief summary of options can be also displayed by -executing :: - - pdfgetx3 --help - -The best way of getting familiar with PDFgetX3 is to process -the example diffraction data described in the :doc:`tutorial`. -In general, the first step is to create a commented configuration file ``pdfgetx3.cfg`` using:: - - pdfgetx3 --createconfig=pdfgetx3.cfg - -The configuration file can have any name, but it is preferable -to use either :file:`pdfgetx3.cfg` or :file:`.pdfgetx3.cfg`, -for these files are automatically loaded by PDFgetX3. All -other configuration files must be passed explicitly to the program -using the :option:`-c, --config <-c>` option. - -Open the pdfgetx3.cfg file in a **text** editor. The lines that -start with a hash mark ``#`` are comments and are not used. The lines -starting with a right brace ``[`` denote sections in the configuration -file. The active lines are all formatted as -"NAME=VALUE". Although PDFgetX3 has many options, in general only a few -of them are critical for the PDF calculation: - -* :confval:`dataformat` -- specifies the input data format - -* :confval:`wavelength` -- radiation wavelength in Å required for the - "twotheta" format. - -* :confval:`composition` -- chemical composition of the sample - -* :confval:`qmaxinst` -- upper *Q* boundary for a meaningful measurement - intensities. - -* :confval:`qmax` -- *Q*-cutoff for the Fourier transformation that - yields the PDF. - -Save the updated configuration file and run pdfgetx3 on the input data -:file:`FILENAME.chi` as :: - - pdfgetx3 --verbose=info -t gr FILENAME.chi - -Here the :option:`--verbose=info <--verbose>` option makes pdfgetx3 -print -more information about its operation. This helps to verify -if the configuration file is indeed loaded and if the parameter -values are assigned as intended. The PDFgetX3 will not write -any output files unless told so. The :option:`-t gr <-t>` option -tells the program to save the final |Gr| curve as a -:file:`FILENAME.gr` file in the working directory. - -The saved .gr file contains a header with all the calculation -parameters and the input file name. The .gr file can be therefore -also used as a configuration file in order to redo the same -calculation :: - - pdfgetx3 -c FILENAME.gr --plot=fq,gr - -Note this command does not include any .chi file and this will as -a result process the previously used input :file:`FILENAME.chi`. -The :option:`--plot=fq,gr <-p>` option tells PDFgetX3 to -display 2 plots for the reduced structure function |FQ| and the -final PDF |Gr|. The :option:`!--plot` option also implies an -:doc:`interactive mode ` -therefore the program does not exit, but starts an -interactive `IPython`_ session. To exit the interactive mode, -type ``exit()`` and press Enter. - -.. index:: pdfgetn3 (program) -.. _cmd-pdfgetn3: - -pdfgetn3 command ------------------------------------------------------------------------- - -The pdfgetx3 and pdfgetn3 programs operate in a very similar fashion -apart from being set to assume X-ray and neutron data respectively. -The type of the scattering data can be also specified using the -:option:`--mode` option. Running ``pdfgetn3`` is nearly identical -to executing ``pdfgetx3 --mode=neutron``. The only difference between -these commands is that pdfgetx3 checks for configuration files -:file:`pdfgetx3.cfg` and :file:`.pdfgetx3.cfg`, whereas -pdfgetn3 looks for :file:`pdfgetn3.cfg` and :file:`.pdfgetn3.cfg`. - -.. index:: pdfgets3 (program) -.. _cmd-pdfgets3: - -pdfgets3 command ------------------------------------------------------------------------- - -The pdfgets3 program is virtually the same as its counterparts for x-ray -(pdfgetx3) and neutron (pdfgetn3) diffraction data. The only difference -is that instead of referencing the well documented x-ray or neutron -scattering form factor data, a user-defined form factor data is used -for getting the PDF from a small-angle scattering (SAS) data. This -behavior is enabled by specifying ``mode = sas`` in the configuration -file or in the command line tool. The pdfgets3 program by default -searches for a configuration named :file:`pdfgets3.cfg` and -:file:`.pdfgets3.cfg` in order, when no configuration file is specified. - -Please refer to the :doc:`tutorial section ` for a step-by-step processing of the example data files and for demonstration of the capabilities in PDFgetX3, PDFgetN3 and PDFgetS3. diff --git a/static_root/doc/pdfgetx/2.2.0/_sources/release.rst.txt b/static_root/doc/pdfgetx/2.2.0/_sources/release.rst.txt deleted file mode 100644 index 7ede93fa..00000000 --- a/static_root/doc/pdfgetx/2.2.0/_sources/release.rst.txt +++ /dev/null @@ -1,3 +0,0 @@ -.. index:: release notes - -.. mdinclude:: ../../CHANGELOG.md diff --git a/static_root/doc/pdfgetx/2.2.0/_sources/tutorial.rst.txt b/static_root/doc/pdfgetx/2.2.0/_sources/tutorial.rst.txt deleted file mode 100644 index c87a993f..00000000 --- a/static_root/doc/pdfgetx/2.2.0/_sources/tutorial.rst.txt +++ /dev/null @@ -1,807 +0,0 @@ -Tutorial -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 -.. index:: example files -.. py:currentmodule:: diffpy.pdfgetx - -In this tutorial we will convert several X-ray powder diffraction -patterns to corresponding PDFs. Open a terminal on a Unix-based system -or a Command Prompt on Windows and navigate to the :file:`examples` -folder included with the PDFgetX3 distribution. The :file:`examples` -folder can be found in the parent "doc" directory relative to this -document or another option is to just search your file system for -one of the input files mentioned below. -The example files are also available at -|zipped-examples|. - - -.. index:: examples - -Nickel X-ray PDF ------------------------------------------------------------------------- - -predefined configuration file -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - - -Change to the :file:`Ni` directory. The file named -:file:`ni300mesh_300k_nor_1-5.chi` contains powder X-ray data -measured from nickel at the Advanced Photon Source beamline -6ID-D. The file contains two columns for the |twotheta| scattering -angles and X-ray intensities. The second file -:file:`kapton_bgrd_300k_nor_2-3.chi` contains the background -measurement, i.e., the intensities from an empty capillary. -Finally, the :file:`pdfgetx3.cfg` contains a complete configuration -parameters for converting the powder pattern to a PDF. Since all -processing parameters are already defined in the configuration file, -the first PDF calculation is very simple and involves running the -:ref:`pdfgetx3 ` program -with the powder data file as an argument:: - - $ pdfgetx3 ni300mesh_300k_nor_1-5.chi - -For the first run there should be no output on the screen, -however a new file, :file:`ni300mesh_300k_nor_1-5.gr` should appear -in the work directory. -We can use the :ref:`plotdata ` program, -included with this software, to plot the output data:: - - $ plotdata ni300mesh_300k_nor_1-5.gr - -This will open a graph window and start an `IPython`_ interactive session. -To exit and close the figure, type ``exit()`` on the IPython prompt. -Let's run the program again, but now with a -:option:`--verbose=info <--verbose>` -option, to show more details about the program actions. :: - - $ pdfgetx3 --verbose=info ni300mesh_300k_nor_1-5.chi - - INFO:applying pdfgetx3 defaults - INFO:set config.mode = xray - INFO:searching for default config file /home/user/.pdfgetx3.cfg - INFO:searching for default config file .pdfgetx3.cfg - INFO:searching for default config file pdfgetx3.cfg - INFO:loaded default config file pdfgetx3.cfg - INFO:reset config.twothetazero = 0.0 - INFO:parsing config file section [DEFAULT] - INFO:set config.dataformat = twotheta - INFO:set config.backgroundfile = kapton_bgrd_300k_nor_2-3.chi - INFO:set config.outputtypes = gr - INFO:set config.wavelength = 0.142774 - INFO:set config.composition = Ni - INFO:set config.qmaxinst = 26.5 - INFO:set config.qmax = 26.0 - INFO:set config.rmin = 0.0 - INFO:set config.rmax = 30.0 - INFO:set config.rstep = 0.01 - INFO:finished parsing config file - INFO:processing command line options - INFO:set config.verbose = info - INFO:finished with command line options - INFO:using 1 input files from the command line. - INFO:configuring PDFGetter mode 'xray' - INFO:calling config_xray - INFO:started PDF processing. - INFO:processing 'ni300mesh_300k_nor_1-5.chi' - INFO:resolved output file '' as 'ni300mesh_300k_nor_1-5.gr' - WARNING:ni300mesh_300k_nor_1-5.gr already exists. - WARNING:Use "--force=yes" or "--force=once" to overwrite. - INFO:elapsed time: 0.095 - -Here we can see what configuration files are searched, which of them -get loaded and what are the effective values of the processing -parameters. Unless the :option:`!--verbose` option is in effect, the -program will show only messages that have either WARNING or ERROR -importance. The warning line above indicates no output has been -written, because that file already exists. This safety check can be -overruled with the :option:`--force=yes <--force>` option, upon -which pdfgetx3 would overwrite any existing files. - -PDFgetX3 output files start with a header that lists all the processing -parameters and can be used as a valid configuration file with the -:option:`-c` option. Another option, :option:`--plot=[iq,sq,fq,gr] -<-p>` turns on plotting of the final PDF or of some other result. A -side effect of the :option:`!--plot` option is that pdfgetx3 starts in -an interactive mode, so the user can manipulate or save the plots. To -put it all together, we are now going to redo the original PDF and plot -its reduced total scattering function |FQ| and the PDF curve |Gr|. This -time the chi file is not necessary, because the input file is already -listed in the gr file that is now used as a custom configuration:: - - $ pdfgetx3 -c ni300mesh_300k_nor_1-5.gr --plot=fq,gr - - WARNING:ni300mesh_300k_nor_1-5.gr already exists. - WARNING:Use "--force=yes" or "--force=once" to overwrite. - - Variables related to PDF processing: - - pdfgetter -- PDFGetter used for calculation. - config -- configuration data used by PDFGetter. - See config.inputfiles for a list of inputs. - iraw -- matrix of input raw intensities with 2 rows per file. - iq sq fq gr -- intermediate results per each input file stored - as matrix rows. - - Functions: - - tuneconfig -- dynamically tune configuration variables. - processfiles -- process specified data files. - clearsession -- clear all elements from the inputfiles, iraw, - iq, sq, fq and gr variables. - plotdata -- plot all or selected columns from a text data file. - loaddata -- load all or selected columns from a text data file. - findfiles -- search for files matching the specified patterns. - - Use "%pdfgetx3" for a fresh run without exiting IPython. - In [1]: - -This will open a plot figure similar to - -.. image:: images/nickelfqgr.png - -Because of the :doc:`interactive mode ` implied by plotting, -the program enters an IPython session. -The IPython environment is preloaded with several extra functions -and variables related to the PDF processing. For example, the -:interactvar:`config` variable stores all the configuration parameters, -and its content can be displayed with the :py:func:`print` -function as :: - - In [1]: print(config) - - configfile = ni300mesh_300k_nor_1-5.gr - configsection = DEFAULT - dataformat = twotheta - ... - qmax = 26.0 - ... - -The :py:func:`.processfiles` function allows to redo the -whole calculation and plotting process for additional input files or -for new parameter values. To plot the |FQ| and |Gr| -curves calculated at |Qmax| = 22 |Ainv|, we can call -:py:func:`!processfiles` and pass it a keyword argument for -the new qmax as follows:: - - In [2]: processfiles(qmax=22) - - # the qmax parameter was updated to a new value, thus - In [3]: config.qmax - Out[3]: 22 - -There should be now two lines in each plot axis corresponding to -the results at |Qmax| equal 26 and 22 |Ainv|. To exit the program, -type ``exit()``. - - -processing from scratch -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -We have already encountered the command-line :option:`option -c <-c>` -for specifying a custom configuration file. A special argument "NONE", -will make pdfgetx3 ignore any configuration files and start up in a -default state. We can use this feature to process the nickel PDF as if -we did not have any configuration file:: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi - - WARNING:Nothing to do, use "-t" or "--plot" options. - ERROR:Configuration error: wavelength not specified. - ERROR:See "--help" for more hints. - -There is an error, for the wavelength is necessary to convert -the scattering angle |twotheta| to momentum transfer *Q*. The -X-ray wavelength was 0.142774 Å, which can be passed with the -:option:`-w, --wavelength <-w>` option:: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 - - ... - ERROR:Configuration error: Chemical composition not known. - ERROR:See "--help" for more hints. - -There is still an error. The PDF calculation needs an average -X-ray scattering factor of the material, which is obtained from -sample chemical composition. The composition can be specified -with the :option:`--composition` option. The example -below uses a "\\\\" character to indicate the command continues -on the next line. Such syntax works in Unix terminals, but -on Windows the command has to be typed all on a single line:: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \ - --composition=Ni - - WARNING:Nothing to do, use "-t" or "--plot" options. - ... - -There was no error message this time, but the program complains -about a lack of action. The pdfgetx3 program does not write any results -unless instructed by the :option:`-t, --outputtypes <-t>` option. -The outputtypes option recognizes the following result types: -"iq", "sq", "fq", "gr". One or more of these type strings, -separated by a comma, can be included with the -:option:`!-t` option, which will produce the corresponding -output files. An empty string, such as ``-t ""``, or ``-t NONE`` -may be used to clear any outputtypes defined in the configuration file, -and avoid the unseemly file-exists warnings. - -At this point, we will not write any output files, but will use the -:option:`--plot <-p>` option to display the calculated curves. The -:option:`!--plot` accepts the same arguments as outputtypes, so to -display the |FQ| and |Gr| curves we shall run :: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \ - --composition=Ni --plot=fq,gr - - WARNING:qmaxinst reset to last nonzero point qmaxinst=28.0865680161 - WARNING:qmax reset to the data boundary qmaxinst=28.0865680161 - -which should open the following plot window: - -.. image:: images/nickelfqgrnoisy.png - -The graphs look terrible. The PDF is very noisy and the |FQ| curve -shows a sudden break at about 27 |Ainv|. What happened? The powder -intensities are inaccurate at a very top of the detector angular range. -The interactive session is setup with -:interactvar:`iraw`, :interactvar:`iq`, :interactvar:`sq`, -:interactvar:`fq`, :interactvar:`gr` -variables for the original raw data and intermediate results. We -are going to plot the "iq" variable that has the input intensities -resampled on the *Q* grid. The matplotlib function -:py:func:`~matplotlib.pyplot.clf` clears the figure, -the iq variable is a two-row matrix with *Q* and *I* rows, and the -:py:func:`~matplotlib.pyplot.axis` -function lets us zoom to a given range:: - - In [1]: clf() - In [2]: plot(iq[0], iq[1]) - Out[2]: [] - In [3]: axis([20, 29, 0, 3000]) - Out[3]: [20, 29, 0, 3000] - -The graph shows a sudden drop in the raw intensities at 27 |Ainv|. -The :confval:`qmaxinst` variable defines a *Q* cutoff for a meaningful -instrument intensities and, to be on a safe side, we are going to set -it to 26.5 |Ainv| :: - - In [4]: processfiles(qmaxinst=26.5) - WARNING:qmax reset to the data boundary qmaxinst=26.5 - -The updated curves looks reasonable without any oscillations and -breakpoints. The :py:func:`.tuneconfig` function provides a -GUI-driven way for visualizing the processing parameters and their -effect on the results. Type ``tuneconfig()`` to execute the function, -which should open a new window with several sliders. Try to move -different sliders and see how do the |FQ| and |Gr| curves change. -The :confval:`rpoly` parameter controls the degree of data-correction -polynomial and is an approximate low-*r* bound of reliable *G* -values. Once the parameters are tuned, they may be set to -exact values. We will also turn on the writing of the |Gr| -curve and save it to an output file :file:`nicmd.gr`:: - - In [14]: config.qmax = 26 - In [15]: config.outputtypes = 'gr' - In [16]: config.output = 'nicmd' - In [17]: processfiles() - - -Platinum X-ray series ------------------------------------------------------------------------- - -PDFgetX3 has been designed to handle large series of data files. -With the fast area-detectors it is easy to measure hundreds of X-ray -patterns in a time or temperature series. Normally, these input -files need to be entered as command line arguments to the pdfgetx3 -program. This is usually no problem with Unix-like shells, which -expand filename patterns to a list of matching files. -However, such file generation is in general not available on Windows. -The input file names tend to include scan numbers which are useful -for selecting desired data, yet even with Unix shells it is -difficult to match a range of scan numbers -(`z-shell `_ being a notable exception). - -.. _my-findexamples: - -matching input files -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -The :program:`pdfgetx3` program includes a built-in function for finding -a set of input files. The command line arguments are normally taken as -input file names. However, if the :option:`-f, --find <-f>` option is -present, the arguments are understood as patterns and the program looks -for files that match ALL of them. Another option -:option:`-l, --list <-l>` makes pdfgetx3 print out the matching files -without any other action, which can be used to verify if the patterns -match intended files. - -We will try out this file search on platinum example files. Open a -terminal and navigate to the :file:`Pt` directory. There should be a -:file:`series` subdirectory with 6 chi files indexed from 903 to 908. -At first, let's stay in the :file:`Pt` directory and run the following -command :: - - $ pdfgetx3 --list --find - - Pt_bulk-00055-pdfgetx2.gr - Pt_bulk-00055-pdfgetx3.gr - Pt_bulk-00055.chi - empty_capillary-00032.chi - pdfgetx3.cfg - plotpdfcomparison.py - -Without any patterns the file search matches all files in the current -directory. Now let's try to add name patterns. There are few special -patterns, for example ``^`` matches at the beginning of the filename, ``$`` at the end and ```` matches a range of integer values from -*N* to *M*. The patterns containing ``^$<>`` need to be quoted as -these characters have special meaning in the shell. Here are some -examples how it works. - -Filenames containing "y":: - - $ pdfgetx3 --list --find y - empty_capillary-00032.chi - plotpdfcomparison.py - -Filenames that containing both "y" and "chi", here we use the -options :option:`!--list` and :option:`!--find` in an abbreviated -form :option:`!-l` and :option:`!-f`:: - - $ pdfgetx3 -lf y chi - empty_capillary-00032.chi - -Filenames that start with "e":: - - $ pdfgetx3 --list --find "^e" - empty_capillary-00032.chi - -Filenames that contain *character* "2":: - - $ pdfgetx3 --list --find 2 - Pt_bulk-00055-pdfgetx2.gr - empty_capillary-00032.chi - -Filenames that contain *numeric value* "2":: - - $ pdfgetx3 -lf "<2>" - Pt_bulk-00055-pdfgetx2.gr - -The special argument ``+`` starts a new group of patterns to -generate extra files when they cannot be all covered by -a single set of patterns. For example, to match files that -contain contain both "bulk" and "chi" substrings and then -also those that have "empty" and "chi" in their names, use:: - - $ pdfgetx3 -lf bulk chi + empty chi - Pt_bulk-00055.chi - empty_capillary-00032.chi - -When pattern groups overlap the resulting matches are -made unique and each file is listed only once :: - - $ pdfgetx3 -lf bulk chi + chi - Pt_bulk-00055.chi - empty_capillary-00032.chi - - -data search path -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -Each group of PDFgetX3 patterns can have one entry containing -forward slash "/" to specify a non-current path that is searched -for input files. The path specification affects the current and -the following pattern groups unless they provide their own path. -The chi files numbered "903" to "905" and "908" from the -:file:`series` subdirectory can be therefore matched using :: - - $ pdfgetx3 -lf series/ "<903-905>" + 908 - series/Pt_bulk_ramp03-00903.chi - series/Pt_bulk_ramp03-00904.chi - series/Pt_bulk_ramp03-00905.chi - series/Pt_bulk_ramp03-00908.chi - -The current directory can be selected using `./` :: - - $ pdfgetx3 -lf series/ 903 + ./ bulk chi - series/Pt_bulk_ramp03-00903.chi - Pt_bulk-00055.chi - -When additional pattern groups contain only the path -argument, they reuse the existing set of patterns. The -".chi"-ending files in the current and :file:`series` -directories can be thus found using :: - - $ pdfgetx3 -lf ".chi$" + series/ - Pt_bulk-00055.chi - empty_capillary-00032.chi - series/Pt_bulk_ramp03-00903.chi - series/Pt_bulk_ramp03-00904.chi - series/Pt_bulk_ramp03-00905.chi - series/Pt_bulk_ramp03-00906.chi - series/Pt_bulk_ramp03-00907.chi - series/Pt_bulk_ramp03-00908.chi - - -output file names -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -By default the output files are saved in the current directory. The -output path, can be changed with the :option:`-o, --output <-o>` option. -The :option:`!-o` recognizes several tokens that are replaced with -parts of the input file name, for example, "@b" expands to an -extension-stripped base name. In similar faction, "@o" is replaced -with the output type extension. Thus to generate PDFs for all files -in the :file:`series` directory and save them in the -:file:`series-gr` subfolder do :: - - $ pdfgetx3 --find series/ "<900-910>.chi" --output=series-gr/@b.@o - -The extension ".@o" is automatic when not included anywhere in the -output file name. Thus to process the Pt series at |Qmax| = 18 |Ainv| -while saving the results in the same folder, but with a "_qmax18" suffix -in their filenames do :: - - $ pdfgetx3 --find series/ "<900-910>.chi" --qmax=18 -o series-gr/@b_qmax18 - -For input file :file:`Pt_bulk_ramp03-00903.chi` the :option:`!-o` option -above expands to output path :file:`series-gr/Pt_bulk_ramp03-00903_qmax18.gr`. -The :file:`series-gr` directory should now contain 12 "gr" files, -6 of them processed at |Qmax| = 27 |Ainv| as given by configuration -file and 6 others processed at |Qmax| = 18 |Ainv|. - -.. seealso:: :option:`-o, --output <-o>` for a list of output tokens - -.. index:: tuneconfig (example) -.. _my-tuneconfig: - -Interactive tuning of parameters ------------------------------------------------------------------------- - -One of the most powerful features of PDFgetX3 is the ability to tune -PDF processing parameters in an interactive mode and immediately -visualize their effect on the results. To demonstrate this feature, -navigate to the :file:`Ni` directory in the shell and process -the nickel PDF while plotting the |FQ| and |Gr| curves. -Because of plotting the program will open an interactive IPython -session. The tuning mode can be then entered by calling the -:py:func:`.tuneconfig` -function from the IPython environment :: - - $ pdfgetx3 --plot=fq,gr ni300mesh_300k_nor_1-5.chi - ... - In [1]: tuneconfig() - -The -:py:func:`!tuneconfig` -function will by default add a second set of live lines -for the plotted curves and open a GUI dialog with sliders for the -tunable process parameters. Changing any slider would immediately -recalculate the PDF and update live lines in the plot. - -.. image:: images/tunenickelfqgr.png - -The *constant data scale* check-box rescales the result curves to a -constant maximum value. This is useful for assessing if a parameter -change produces different curve shape or if it just rescales the -results. The tunable parameters are described in the -:ref:`PDF parameters section `. -Only the active parameters are displayed in the tuneconfig GUI, -thus there would be no slider for the :confval:`bgscale` parameter -if PDF has been processed without any background data. - -By default the -:py:func:`!tuneconfig` -function displays the same curves as -specified by the :option:`--plot <-p>` option, however it can be -configured to show arbitrary intermediate results or even visualize -selected steps in the PDF processing. We shall demonstrate this by -showing a live-plot of the polynomial correction together with the final -PDF. At first, we shall use the :py:meth:`!describe` method of the -:py:func:`.pdfgetter` object to print out the chain of -transformations involved in the PDF processing and obtain a reference to -the transformation object *t4* that applies the polynomial correction. -The transformation object can be then included in a list of plot -identifiers that are passed to the :py:func:`!tuneconfig` function :: - - $ pdfgetx3 -i ni300mesh_300k_nor_1-5.chi - ... - Use "%pdfgetx3" for a fresh run without exiting IPython. - - In [1]: fig, ax = subplots(2) - In [2]: pdfgetter.describe() - 0 TransformTwoThetaToQA - convert x data from twotheta to Q in 1/A - 1 TransformQGridRegular - Remove the data outside the (qmin, qmaxinst) range - 2 TransformBackground - subtract background intensity - 3 TransformXrayASFnormChris - scale and normalize intensities by x-ray scattering factors - 4 TransformSQnormRPoly - Normalize S(Q) by fitting a polynomial - 5 TransformSQToFQ - Convert S(Q) to F(Q). - 6 TransformFQgrid - Resample F(Q) to a regular grid suitable for FFT - 7 TransformFQToGr - Convert F(Q) to G(r). - In [3]: t4 = pdfgetter.getTransformation(4) - In [4]: tuneconfig([t4, 'gr'], axeslist=ax) - In [5]: ax[0].legend(loc=2) - -The :py:func:`~matplotlib.pyplot.subplots` function above -is to create a new figure with 2 axes on top of each other. -Overall, the code above should display the following plot -and a GUI window: - -.. image:: images/tunenickelt4gr.png - -The tuning can be finished by clicking the ``Done`` button or closing the -tuneconfig GUI window. The parameter values can be thereafter adjusted -to a rounded values by setting an attribute of the :interactvar:`config` -object, for example:: - - In [5]: config.bgscale = 1.5 - -Finally, to save the new results, we shall first confirm -:confval:`outputtypes` have been correctly set and then use the -:py:func:`.processfiles` function to redo the calculations, plots and -data output for the updated configuration. Note that the -:py:func:`!processfiles` function accepts keyword arguments for -configuration parameters. This is used at line ``In [8]`` to -turn on the :confval:`force` flag and is in effect a shortcut -for an extra ``config.force = True`` statement. :: - - In [6]: config.outputtypes - Out[6]: ['gr'] - In [7]: processfiles() - WARNING:ni300mesh_300k_nor_1-5.gr already exists. - WARNING:Use "--force=yes" or "--force=once" to overwrite. - In [8]: processfiles(force=True) - -:file:`ni300mesh_300k_nor_1-5.gr` was successfully saved at an -updated configuration for there were no warnings after the last call. - - -Neutron PDF ------------------------------------------------------------------------- - -This example illustrates PDF extraction from -neutron powder data using :ref:`pdfgetn3 `. -Navigate to the :file:`n-Sapphire` directory in the shell. -The :file:`sapphire755.dat` file contains powder diffraction data from -sapphire (α-Al\ :sub:`2`\ O\ :sub:`3`) -measured at the constant-wavelength PEARL instrument -at the Delft University of Technology. -The :file:`pdfgetn3.cfg` configuration file specifies -processing parameters such as :confval:`wavelength`, -:confval:`twothetazero`, :confval:`composition`, and :confval:`mode`. - -To extract the sapphire neutron PDF run :: - - $ pdfgetn3 --verbose=info sapphire755.dat - - INFO:applying pdfgetn3 defaults - INFO:set config.mode = neutron - INFO:searching for default config file /home/user/.pdfgetn3.cfg - INFO:searching for default config file .pdfgetn3.cfg - INFO:searching for default config file pdfgetn3.cfg - INFO:loaded default config file pdfgetn3.cfg - INFO:reset config.twothetazero = 0.0 - INFO:parsing config file section [DEFAULT] - INFO:set config.dataformat = twotheta - INFO:set config.backgroundfile = - INFO:set config.outputtypes = fq, gr - INFO:set config.mode = neutron - INFO:set config.wavelength = 1.0989 - INFO:set config.twothetazero = -0.38 - INFO:set config.composition = Al2O3 - INFO:set config.qmaxinst = 11.2 - INFO:set config.qmax = 11.2 - INFO:set config.rmin = 0.0 - INFO:set config.rmax = 20.0 - INFO:set config.rstep = 0.01 - INFO:finished parsing config file - INFO:processing command line options - INFO:set config.verbose = info - INFO:finished with command line options - INFO:using 1 input files from the command line. - INFO:configuring PDFGetter mode 'neutron' - INFO:calling config_neutron - INFO:started PDF processing. - INFO:processing 'sapphire755.dat' - INFO:resolved output file '' as 'sapphire755.fq' - INFO:written outpufile sapphire755.fq - INFO:resolved output file '' as 'sapphire755.gr' - INFO:written outpufile sapphire755.gr - INFO:elapsed time: 0.097 - -This will produce two files :file:`sapphire755.fq`, :file:`sapphire755.gr` -for the |FQ| and |Gr| functions. -To compare them with expected results use :: - - $ plotdata sapphire755-expected.fq sapphire755.fq - $ plotdata sapphire755-expected.gr sapphire755.gr - - -Fit twothetazero ------------------------------------------------------------------------- - -For a good quality PDF it is essential to use powder patterns with -accurate values of *Q*. Some instruments may produce spectra with -a slightly offset scattering angle |twotheta| which -causes inaccurate *Q* and a noticeably worse PDF. -In this example we fit a constant-wavelength neutron PDF from nickel -together with the :confval:`twothetazero` correction parameter for -diffractometer offset. -The procedure can be used to calibrate the zero correction from -a standard sample and then use it for subsequent PDF extractions. -The protocol can be also applied to fit zero correction in -a full-fledged PDF refinement in case -the zero offset may change for different samples. - -This tutorial requires either Linux or Mac OS X platforms, -because the PDF fitting is conducted with -`diffpy.cmi `__, -which is not yet available for Windows. -If diffpy.cmi is not yet installed, -we recommend to use `Anaconda Python`_ and set up a dedicated -Anaconda environment *nbcmi* for this tutorial. -This can be accomplished using the following steps:: - - $ conda create -n nbcmi -c diffpy python=2 diffpy.cmi - $ conda activate nbcmi - $ pip install path/to/diffpy.pdfgetx-VERSION.whl - -When these prerequisites are in place, -change to the :file:`n-twothetazero-fit` directory -and open the self documented Jupyter notebook as follows :: - - $ jupyter notebook fit-twothetazero.ipynb - -.. |tthzero| replace:: :confval:`!twothetazero` - -The notebook sets up and executes several PDF refinements and -compares the results from fits on uncorrected data and with -a fitted |tthzero|. -After running all cells the notebook should produce similar graphs -as in the figure below. - -.. figure:: images/twothetazerofit.* - - Refinement of nickel neutron PDF for **(a)** uncorrected data - and **(b)** with a refined zero correction. - The extracted PDFs are plotted as blue circles, - simulated PDFs as red lines and - the difference is plotted offset in green below. - -The final refined zero offset in the notebook should be approximately -0.36°. -The correction produces experimental PDF with a remarkably better fit -residual R\ :sub:`w` which is lowered from (a) 0.18 to (b) 0.05. - - -Small-angle-scattering PDF (sasPDF) ------------------------------------------------------------------------- - -Here we illustrate how to extract a PDF from small-angle-scattering (sas) data using :ref:`pdfgets3 `. -To do this, navigate to the :file:`Au_DNA_NPA` directory in your terminal. -In this folder, you will find :file:`Au_DNA_NPA.chi` and -:file:`Au_DNA_FF.chi` files which correspond to diffraction data from -DNA-capped Au nanoparticle assemblies and from a DNA-capped Au -nanoparticle colloidal solution respectively. Those two files were -measured at X21 beamline, NSLS and published in `D. Nykypanchuk, M. M. -Maye, D. van der Lelie, and O. Gang, Nature 451, 549 (2008). -`_. We thank Prof. Oleg Gang (Columbia University) for sharing this data. The :file:`pdfgets3.cfg` -configuration file specifies processing parameters such as :confval:`formfactorfile` (required by ``sas`` mode), :confval:`qmin`, :confval:`qmax`, and :confval:`mode`. - -To extract the PDF of DNA-capped DNA nanoparticle assemblies :: - - $ pdfgets3 --verbose=info Au_DNA_NPA.chi - - INFO:applying pdfgets3 defaults - INFO:set config.mode = sas - INFO:searching for default config file /home/user/.pdfgets3.cfg - INFO:searching for default config file .pdfgets3.cfg - INFO:searching for default config file pdfgets3.cfg - INFO:loaded default config file pdfgets3.cfg - INFO:reset config.twothetazero = 0.0 - INFO:parsing config file section [DEFAULT] - INFO:set config.dataformat = QA - INFO:set config.backgroundfile = - INFO:set config.datapath = [] - INFO:set config.formfactorfile = Au_DNA_FF.chi - INFO:set config.output = - INFO:set config.outputtypes = fq, gr - INFO:set config.force = yes - INFO:set config.mode = sas - INFO:set config.rpoly = 240.605 - INFO:set config.qmaxinst = 0.075 - INFO:set config.qmin = 0.01 - INFO:set config.qmax = 0.072 - INFO:set config.rmin = 100.0 - INFO:set config.rmax = 5000.0 - INFO:set config.rstep = 1.0 - INFO:set config.plot = iq, fq, gr - INFO:set config.verbose = info - INFO:finished parsing config file - INFO:processing command line options - INFO:set config.verbose = info - INFO:finished with command line options - INFO:using 1 input files from the command line. - INFO:configuring PDFGetter mode 'sas' - INFO:calling config_sas - INFO:started PDF processing. - INFO:processing 'Au_DNA_NPA.chi' - INFO:resolved output file '' as 'Au_DNA_NPA.fq' - INFO:written outpufile Au_DNA_NPA.fq - INFO:resolved output file '' as 'Au_DNA_NPA.gr' - INFO:written outpufile Au_DNA_NPA.gr - INFO:elapsed time: 0.947 - - -This will save two files :file:`Au_DNA_NPA.fq`, :file:`Au_DNA_NPA.gr` in the same directoy for the |FQ| and |Gr| functions. This also plots |FQ| and |Gr| functions in a pop-up window and the processing parameters such as :confval:`rpoly` or so may be tuned interactively by issuing command :py:func:`!tuneconfig` in the `IPython`_ session as discussed above. - - -Multiple Background Subtraction ------------------------------------------------------------------------- - -Predefined configuration file -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - - -In this tutorial, we will show how to use the multiple-background subtraction -functionality by obtainining equivalent outputs from different, but equivalent, -subtractions. Change directory to the :file:`doc/examples/ -Multiple_Background_Subtraction` directory. The file named -:file:`ni300mesh_300k_nor_1-5.chi` contains powder X-ray data measured from -nickel at the Advanced Photon Source beamline 6ID-D. The file contains two -columns for the |twotheta| scattering angles and X-ray intensities. Similarly, -:file:`kapton_bgrd_300k_nor_2-3.chi` contains the background data (i.e., the -intensities from an empty kapton capillary), and a duplicate file -:file:`kapton_bgrd_300k_nor_2-3_copy.chi` contains the same dataset (this -duplication of the data is necessary when using the same background multiple -times as the internal system only stores a set of unique background filenames). -The last :file:`.chi` file, :file:`TEST_blank-00000.chi`, simply stores a null -dataset and can be used to show the invariance of the PDF under permutation of -the order of background subtractions as well as the fact that more than just -two backgrounds can be subtracted. There are also two config files -:file:`nickel.cfg` and :file:`nickel_sub_two_half_backgrounds.cfg`, each of -which contain a set of complete configuration parameters for converting the Ni -powder pattern to a PDF for the case of doing so via a single background -subtraction and a multiple background subtraction, respectively. Finally, there -is a fully processed G(r) file :file:`ni300mesh_300k_nor_1-5-expected.gr` which -contains the expected output of producing the PDF of the Ni sample after -subtracting the kapton background. Since all processing parameters are already -defined in these configuration files, producing the PDF using multiple -background subtractions is very simple and involves running the :ref:`pdfgetx3 -` program and specifying the multiple background subtraction -config file and the powder data file as arguments:: - - $ pdfgetx3 -c nickel_sub_two_half_backgrounds.cfg ni300mesh_300k_nor_1-5.chi - -The resulting G(r) file, :file:`ni300mesh_300k_nor_1-5.gr`, is the result of -producing the PDF according to:: - - "ni300mesh_300k_nor_1-5.chi" - 0.5*"kapton_bgrd_300k_nor_2-3.chi" - - 0.5*"kapton_bgrd_300k_nor_2-3.chi" - -Which should be equivalent to the case where the following single background -subtraction had been performed:: - - "ni300mesh_300k_nor_1-5.chi" - 1.0*"kapton_bgrd_300k_nor_2-3.chi" - -The fact that both of these result in the same PDF can be verified by comparing -the produced G(r) with the expected G(r) provided in the example:: - - $ plotdata ni300mesh_300k_nor_1-5-expected.gr ni300mesh_300k_nor_1-5.gr - - -Interactive Multiple Background Subtraction -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -The multiple background subtraction functionality can also be carried out -interactively, as per the :ref:`my-tuneconfig` section, using the plural forms -of the relevant variables (i.e., `config.bgscales`, `config.backgroundfiles`, -etc.). diff --git a/static_root/doc/pdfgetx/2.2.0/_static/basic.css b/static_root/doc/pdfgetx/2.2.0/_static/basic.css deleted file mode 100644 index bf18350b..00000000 --- a/static_root/doc/pdfgetx/2.2.0/_static/basic.css +++ /dev/null @@ -1,906 +0,0 @@ -/* - * basic.css - * ~~~~~~~~~ - * - * Sphinx stylesheet -- basic theme. - * - * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS. - * :license: BSD, see LICENSE for details. - * - */ - -/* -- main layout ----------------------------------------------------------- */ - -div.clearer { - clear: both; 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- -/* -- page layout ----------------------------------------------------------- */ - -html { - /* CSS hack for macOS's scrollbar (see #1125) */ - background-color: #FFFFFF; -} - -body { - font-family: 'Palatino', 'Palatino Linotype', 'URW Palladio L', 'Century Schoolbook L', 'Georgia', serif; - font-size: 100%; - background-color: white; - color: #000; - margin: 0; - padding: 0; -} - -div.document { - background-color: white; -} - -div.documentwrapper { - float: left; - width: 100%; -} - -div.bodywrapper { - margin: 0 0 0 230px; -} - -div.body { - background-color: white; - color: #222222; - padding: 0 20px 30px 20px; -} - -div.footer { - color: #555555; - width: 100%; - padding: 9px 0 9px 0; - text-align: center; - font-size: 75%; -} - -div.footer a { - color: #555555; - text-decoration: underline; -} - -div.related { - background-color: white; - line-height: 30px; - color: #666666; -} - -div.related a { - color: #444444; -} - -div.sphinxsidebar { -} - -div.sphinxsidebar h3 { - font-family: 'Myriad Pro', 'Trebuchet Ms', 'Segoe UI', sans-serif; - color: #444444; - font-size: 1.4em; - font-weight: normal; - margin: 0; - padding: 0; -} - -div.sphinxsidebar h3 a { - color: #444444; -} - -div.sphinxsidebar h4 { - font-family: 'Myriad Pro', 'Trebuchet Ms', 'Segoe UI', sans-serif; - color: #444444; - font-size: 1.3em; - font-weight: normal; - margin: 5px 0 0 0; - padding: 0; -} - -div.sphinxsidebar p { - color: #444444; -} - -div.sphinxsidebar p.topless { - margin: 5px 10px 10px 10px; -} - -div.sphinxsidebar ul { - margin: 10px; - padding: 0; - color: #444444; -} - -div.sphinxsidebar a { - color: #444444; -} - -div.sphinxsidebar input { - border: 1px solid #444444; - font-family: sans-serif; - font-size: 1em; -} - - -/* for collapsible sidebar */ -div#sidebarbutton { - background-color: #3c6e83; -} - - -/* -- hyperlink styles ------------------------------------------------------ */ - -a { - color: #00608f; - text-decoration: none; -} - -a:visited { - color: #30306f; - text-decoration: none; -} - -a:hover { - text-decoration: underline; -} - - - -/* -- body styles ----------------------------------------------------------- */ - -div.body h1, -div.body h2, -div.body h3, -div.body h4, -div.body h5, -div.body h6 { - font-family: 'Myriad Pro', 'Trebuchet Ms', 'Segoe UI', sans-serif; - background-color: white; - font-weight: normal; - color: #1a1a1a; - border-bottom: 1px solid #ccc; - margin: 20px -20px 10px -20px; - padding: 3px 0 3px 10px; -} - -div.body h1 { margin-top: 0; font-size: 200%; } -div.body h2 { font-size: 160%; } -div.body h3 { font-size: 140%; } -div.body h4 { font-size: 120%; } -div.body h5 { font-size: 110%; } -div.body h6 { font-size: 100%; } - -a.headerlink { - color: #aaaaaa; - font-size: 0.8em; - padding: 0 4px 0 4px; - text-decoration: none; -} - -a.headerlink:hover { - background-color: #aaaaaa; - color: white; -} - -div.body p, div.body dd, div.body li, div.body blockquote { - text-align: justify; - line-height: 130%; -} - -div.admonition p.admonition-title + p { - display: inline; -} - -div.admonition p { - margin-bottom: 5px; 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- border-top: 1px solid #ac9; - border-bottom: 1px solid #ac9; -} - -div.code-block-caption { - color: #efefef; - background-color: #1c4e63; -} \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.2.0/_static/copybutton.js b/static_root/doc/pdfgetx/2.2.0/_static/copybutton.js deleted file mode 100644 index ca9f489f..00000000 --- a/static_root/doc/pdfgetx/2.2.0/_static/copybutton.js +++ /dev/null @@ -1,57 +0,0 @@ -$(document).ready(function() { - /* Add a [>>>] button on the top-right corner of code samples to hide - * the >>> and ... prompts and the output and thus make the code - * copyable. */ - var div = $('.highlight-python .highlight,' + - '.highlight-pycon .highlight,' + - '.highlight-python3 .highlight') - var pre = div.find('pre'); - - // get the styles from the current theme - pre.parent().parent().css('position', 'relative'); - var hide_text = 'Hide the prompts and output'; - var show_text = 'Show the prompts and output'; - var border_width = pre.css('border-top-width'); - var border_style = pre.css('border-top-style'); - var border_color = pre.css('border-top-color'); - var button_styles = { - 'cursor':'pointer', 'position': 'absolute', 'top': '0', 'right': '0', - 'border-color': border_color, 'border-style': border_style, - 'border-width': border_width, 'color': border_color, 'text-size': '75%', - 'font-family': 'monospace', 'padding-left': '0.2em', 'padding-right': '0.2em', - 'border-radius': '0 3px 0 0' - } - - // create and add the button to all the code blocks that contain >>> - div.each(function(index) { - var jthis = $(this); - if (jthis.find('.gp').length > 0) { - var button = $('>>>'); - button.css(button_styles) - button.attr('title', hide_text); - jthis.prepend(button); - } - // tracebacks (.gt) contain bare text elements that need to be - // wrapped in a span to work with .nextUntil() (see later) - jthis.find('pre:has(.gt)').contents().filter(function() { - return ((this.nodeType == 3) && (this.data.trim().length > 0)); - }).wrap(''); - }); - - // define the behavior of the button when it's clicked - $('.copybutton').toggle( - function() { - var button = $(this); - button.parent().find('.go, .gp, .gt').hide(); - button.next('pre').find('.gt').nextUntil('.gp, .go').css('visibility', 'hidden'); - button.css('text-decoration', 'line-through'); - button.attr('title', show_text); - }, - function() { - var button = $(this); - button.parent().find('.go, .gp, .gt').show(); - button.next('pre').find('.gt').nextUntil('.gp, .go').css('visibility', 'visible'); - button.css('text-decoration', 'none'); - button.attr('title', hide_text); - }); -}); diff --git a/static_root/doc/pdfgetx/2.2.0/_static/doctools.js b/static_root/doc/pdfgetx/2.2.0/_static/doctools.js deleted file mode 100644 index e509e483..00000000 --- a/static_root/doc/pdfgetx/2.2.0/_static/doctools.js +++ /dev/null @@ -1,326 +0,0 @@ -/* - * doctools.js - * ~~~~~~~~~~~ - * - * Sphinx JavaScript utilities for all documentation. - * - * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS. - * :license: BSD, see LICENSE for details. - * - */ - -/** - * select a different prefix for underscore - */ -$u = _.noConflict(); - -/** - * make the code below compatible with browsers without - * an installed firebug like debugger -if (!window.console || !console.firebug) { - var names = ["log", "debug", "info", "warn", "error", "assert", "dir", - "dirxml", "group", "groupEnd", "time", "timeEnd", "count", "trace", - "profile", "profileEnd"]; - window.console = {}; - for (var i = 0; i < names.length; ++i) - window.console[names[i]] = function() {}; -} - */ - -/** - * small helper function to urldecode strings - * - * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/decodeURIComponent#Decoding_query_parameters_from_a_URL - */ -jQuery.urldecode = function(x) { - if (!x) { - return x - } - return decodeURIComponent(x.replace(/\+/g, ' ')); -}; - -/** - * small helper function to urlencode strings - */ -jQuery.urlencode = encodeURIComponent; - -/** - * This function returns the parsed url parameters of the - * current request. Multiple values per key are supported, - * it will always return arrays of strings for the value parts. - */ -jQuery.getQueryParameters = function(s) { - if (typeof s === 'undefined') - s = document.location.search; - var parts = s.substr(s.indexOf('?') + 1).split('&'); - var result = {}; - for (var i = 0; i < parts.length; i++) { - var tmp = parts[i].split('=', 2); - var key = jQuery.urldecode(tmp[0]); - var value = jQuery.urldecode(tmp[1]); - if (key in result) - result[key].push(value); - else - result[key] = [value]; - } - return result; -}; - -/** - * highlight a given string on a jquery object by wrapping it in - * span elements with the given class name. - */ -jQuery.fn.highlightText = function(text, className) { - function highlight(node, addItems) { - if (node.nodeType === 3) { - var val = node.nodeValue; - var pos = val.toLowerCase().indexOf(text); - if (pos >= 0 && - !jQuery(node.parentNode).hasClass(className) && - !jQuery(node.parentNode).hasClass("nohighlight")) { - var span; - var isInSVG = jQuery(node).closest("body, svg, foreignObject").is("svg"); - if (isInSVG) { - span = document.createElementNS("http://www.w3.org/2000/svg", "tspan"); - } else { - span = document.createElement("span"); - span.className = className; - } - span.appendChild(document.createTextNode(val.substr(pos, text.length))); - node.parentNode.insertBefore(span, node.parentNode.insertBefore( - document.createTextNode(val.substr(pos + text.length)), - node.nextSibling)); - node.nodeValue = val.substr(0, pos); - if (isInSVG) { - var rect = document.createElementNS("http://www.w3.org/2000/svg", "rect"); - var bbox = node.parentElement.getBBox(); - rect.x.baseVal.value = bbox.x; - rect.y.baseVal.value = bbox.y; - rect.width.baseVal.value = bbox.width; - rect.height.baseVal.value = bbox.height; - rect.setAttribute('class', className); - addItems.push({ - "parent": node.parentNode, - "target": rect}); - } - } - } - else if (!jQuery(node).is("button, select, textarea")) { - jQuery.each(node.childNodes, function() { - highlight(this, addItems); - }); - } - } - var addItems = []; - var result = this.each(function() { - highlight(this, addItems); - }); - for (var i = 0; i < addItems.length; ++i) { - jQuery(addItems[i].parent).before(addItems[i].target); - } - return result; -}; - -/* - * backward compatibility for jQuery.browser - * This will be supported until firefox bug is fixed. - */ -if (!jQuery.browser) { - jQuery.uaMatch = function(ua) { - ua = ua.toLowerCase(); - - var match = /(chrome)[ \/]([\w.]+)/.exec(ua) || - /(webkit)[ \/]([\w.]+)/.exec(ua) || - /(opera)(?:.*version|)[ \/]([\w.]+)/.exec(ua) || - /(msie) ([\w.]+)/.exec(ua) || - ua.indexOf("compatible") < 0 && /(mozilla)(?:.*? rv:([\w.]+)|)/.exec(ua) || - []; - - return { - browser: match[ 1 ] || "", - version: match[ 2 ] || "0" - }; - }; - jQuery.browser = {}; - jQuery.browser[jQuery.uaMatch(navigator.userAgent).browser] = true; -} - -/** - * Small JavaScript module for the documentation. - */ -var Documentation = { - - init : function() { - this.fixFirefoxAnchorBug(); - this.highlightSearchWords(); - this.initIndexTable(); - if (DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS) { - this.initOnKeyListeners(); - } - }, - - /** - * i18n support - */ - TRANSLATIONS : {}, - PLURAL_EXPR : function(n) { return n === 1 ? 0 : 1; }, - LOCALE : 'unknown', - - // gettext and ngettext don't access this so that the functions - // can safely bound to a different name (_ = Documentation.gettext) - gettext : function(string) { - var translated = Documentation.TRANSLATIONS[string]; - if (typeof translated === 'undefined') - return string; - return (typeof translated === 'string') ? translated : translated[0]; - }, - - ngettext : function(singular, plural, n) { - var translated = Documentation.TRANSLATIONS[singular]; - if (typeof translated === 'undefined') - return (n == 1) ? singular : plural; - return translated[Documentation.PLURALEXPR(n)]; - }, - - addTranslations : function(catalog) { - for (var key in catalog.messages) - this.TRANSLATIONS[key] = catalog.messages[key]; - this.PLURAL_EXPR = new Function('n', 'return +(' + catalog.plural_expr + ')'); - this.LOCALE = catalog.locale; - }, - - /** - * add context elements like header anchor links - */ - addContextElements : function() { - $('div[id] > :header:first').each(function() { - $('\u00B6'). - attr('href', '#' + this.id). - attr('title', _('Permalink to this headline')). - appendTo(this); - }); - $('dt[id]').each(function() { - $('\u00B6'). - attr('href', '#' + this.id). - attr('title', _('Permalink to this definition')). - appendTo(this); - }); - }, - - /** - * workaround a firefox stupidity - * see: https://bugzilla.mozilla.org/show_bug.cgi?id=645075 - */ - fixFirefoxAnchorBug : function() { - if (document.location.hash && $.browser.mozilla) - window.setTimeout(function() { - document.location.href += ''; - }, 10); - }, - - /** - * highlight the search words provided in the url in the text - */ - highlightSearchWords : function() { - var params = $.getQueryParameters(); - var terms = (params.highlight) ? params.highlight[0].split(/\s+/) : []; - if (terms.length) { - var body = $('div.body'); - if (!body.length) { - body = $('body'); - } - window.setTimeout(function() { - $.each(terms, function() { - body.highlightText(this.toLowerCase(), 'highlighted'); - }); - }, 10); - $('

    ' + _('Hide Search Matches') + '

    ') - .appendTo($('#searchbox')); - } - }, - - /** - * init the domain index toggle buttons - */ - initIndexTable : function() { - var togglers = $('img.toggler').click(function() { - var src = $(this).attr('src'); - var idnum = $(this).attr('id').substr(7); - $('tr.cg-' + idnum).toggle(); - if (src.substr(-9) === 'minus.png') - $(this).attr('src', src.substr(0, src.length-9) + 'plus.png'); - else - $(this).attr('src', src.substr(0, src.length-8) + 'minus.png'); - }).css('display', ''); - if (DOCUMENTATION_OPTIONS.COLLAPSE_INDEX) { - togglers.click(); - } - }, - - /** - * helper function to hide the search marks again - */ - hideSearchWords : function() { - $('#searchbox .highlight-link').fadeOut(300); - $('span.highlighted').removeClass('highlighted'); - var url = new URL(window.location); - url.searchParams.delete('highlight'); - window.history.replaceState({}, '', url); - }, - - /** - * make the url absolute - */ - makeURL : function(relativeURL) { - return DOCUMENTATION_OPTIONS.URL_ROOT + '/' + relativeURL; - }, - - /** - * get the current relative url - */ - getCurrentURL : function() { - var path = document.location.pathname; - var parts = path.split(/\//); - $.each(DOCUMENTATION_OPTIONS.URL_ROOT.split(/\//), function() { - if (this === '..') - parts.pop(); - }); - var url = parts.join('/'); - return path.substring(url.lastIndexOf('/') + 1, path.length - 1); - }, - - initOnKeyListeners: function() { - $(document).keydown(function(event) { - var activeElementType = document.activeElement.tagName; - // don't navigate when in search box, textarea, dropdown or button - if (activeElementType !== 'TEXTAREA' && activeElementType !== 'INPUT' && activeElementType !== 'SELECT' - && activeElementType !== 'BUTTON' && !event.altKey && !event.ctrlKey && !event.metaKey - && !event.shiftKey) { - switch (event.keyCode) { - case 37: // left - var prevHref = $('link[rel="prev"]').prop('href'); - if (prevHref) { - window.location.href = prevHref; - return false; - } - break; - case 39: // right - var nextHref = $('link[rel="next"]').prop('href'); - if (nextHref) { - window.location.href = nextHref; - return false; - } - break; - } - } - }); - } -}; - -// quick alias for translations -_ = Documentation.gettext; - -$(document).ready(function() { - Documentation.init(); -}); diff --git a/static_root/doc/pdfgetx/2.2.0/_static/documentation_options.js b/static_root/doc/pdfgetx/2.2.0/_static/documentation_options.js deleted file mode 100644 index 77bace5c..00000000 --- a/static_root/doc/pdfgetx/2.2.0/_static/documentation_options.js +++ /dev/null @@ -1,12 +0,0 @@ -var DOCUMENTATION_OPTIONS = { - URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'), - VERSION: '2.2.0', - LANGUAGE: 'None', - COLLAPSE_INDEX: false, - BUILDER: 'html', - FILE_SUFFIX: '.html', - LINK_SUFFIX: '.html', - HAS_SOURCE: true, - SOURCELINK_SUFFIX: '.txt', - NAVIGATION_WITH_KEYS: true -}; \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.2.0/_static/favicon.png b/static_root/doc/pdfgetx/2.2.0/_static/favicon.png deleted file mode 100644 index 93e4a02c..00000000 Binary files a/static_root/doc/pdfgetx/2.2.0/_static/favicon.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.2.0/_static/file.png b/static_root/doc/pdfgetx/2.2.0/_static/file.png deleted file mode 100644 index a858a410..00000000 Binary files a/static_root/doc/pdfgetx/2.2.0/_static/file.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.2.0/_static/jquery-3.5.1.js b/static_root/doc/pdfgetx/2.2.0/_static/jquery-3.5.1.js deleted file mode 100644 index 50937333..00000000 --- a/static_root/doc/pdfgetx/2.2.0/_static/jquery-3.5.1.js +++ /dev/null @@ -1,10872 +0,0 @@ -/*! - * jQuery JavaScript Library v3.5.1 - * https://jquery.com/ - * - * Includes Sizzle.js - * https://sizzlejs.com/ - * - * Copyright JS Foundation and other contributors - * Released under the MIT license - * https://jquery.org/license - * - * Date: 2020-05-04T22:49Z - */ -( function( global, factory ) { - - "use strict"; - - if ( typeof module === "object" && typeof module.exports === "object" ) { - - // For CommonJS and CommonJS-like environments where a proper `window` - // is present, execute the factory and get jQuery. - // For environments that do not have a `window` with a `document` - // (such as Node.js), expose a factory as module.exports. - // This accentuates the need for the creation of a real `window`. - // e.g. var jQuery = require("jquery")(window); - // See ticket #14549 for more info. - module.exports = global.document ? - factory( global, true ) : - function( w ) { - if ( !w.document ) { - throw new Error( "jQuery requires a window with a document" ); - } - return factory( w ); - }; - } else { - factory( global ); - } - -// Pass this if window is not defined yet -} )( typeof window !== "undefined" ? window : this, function( window, noGlobal ) { - -// Edge <= 12 - 13+, Firefox <=18 - 45+, IE 10 - 11, Safari 5.1 - 9+, iOS 6 - 9.1 -// throw exceptions when non-strict code (e.g., ASP.NET 4.5) accesses strict mode -// arguments.callee.caller (trac-13335). But as of jQuery 3.0 (2016), strict mode should be common -// enough that all such attempts are guarded in a try block. -"use strict"; - -var arr = []; - -var getProto = Object.getPrototypeOf; - -var slice = arr.slice; - -var flat = arr.flat ? function( array ) { - return arr.flat.call( array ); -} : function( array ) { - return arr.concat.apply( [], array ); -}; - - -var push = arr.push; - -var indexOf = arr.indexOf; - -var class2type = {}; - -var toString = class2type.toString; - -var hasOwn = class2type.hasOwnProperty; - -var fnToString = hasOwn.toString; - -var ObjectFunctionString = fnToString.call( Object ); - -var support = {}; - -var isFunction = function isFunction( obj ) { - - // Support: Chrome <=57, Firefox <=52 - // In some browsers, typeof returns "function" for HTML elements - // (i.e., `typeof document.createElement( "object" ) === "function"`). - // We don't want to classify *any* DOM node as a function. - return typeof obj === "function" && typeof obj.nodeType !== "number"; - }; - - -var isWindow = function isWindow( obj ) { - return obj != null && obj === obj.window; - }; - - -var document = window.document; - - - - var preservedScriptAttributes = { - type: true, - src: true, - nonce: true, - noModule: true - }; - - function DOMEval( code, node, doc ) { - doc = doc || document; - - var i, val, - script = doc.createElement( "script" ); - - script.text = code; - if ( node ) { - for ( i in preservedScriptAttributes ) { - - // Support: Firefox 64+, Edge 18+ - // Some browsers don't support the "nonce" property on scripts. - // On the other hand, just using `getAttribute` is not enough as - // the `nonce` attribute is reset to an empty string whenever it - // becomes browsing-context connected. - // See https://github.com/whatwg/html/issues/2369 - // See https://html.spec.whatwg.org/#nonce-attributes - // The `node.getAttribute` check was added for the sake of - // `jQuery.globalEval` so that it can fake a nonce-containing node - // via an object. - val = node[ i ] || node.getAttribute && node.getAttribute( i ); - if ( val ) { - script.setAttribute( i, val ); - } - } - } - doc.head.appendChild( script ).parentNode.removeChild( script ); - } - - -function toType( obj ) { - if ( obj == null ) { - return obj + ""; - } - - // Support: Android <=2.3 only (functionish RegExp) - return typeof obj === "object" || typeof obj === "function" ? - class2type[ toString.call( obj ) ] || "object" : - typeof obj; -} -/* global Symbol */ -// Defining this global in .eslintrc.json would create a danger of using the global -// unguarded in another place, it seems safer to define global only for this module - - - -var - version = "3.5.1", - - // Define a local copy of jQuery - jQuery = function( selector, context ) { - - // The jQuery object is actually just the init constructor 'enhanced' - // Need init if jQuery is called (just allow error to be thrown if not included) - return new jQuery.fn.init( selector, context ); - }; - -jQuery.fn = jQuery.prototype = { - - // The current version of jQuery being used - jquery: version, - - constructor: jQuery, - - // The default length of a jQuery object is 0 - length: 0, - - toArray: function() { - return slice.call( this ); - }, - - // Get the Nth element in the matched element set OR - // Get the whole matched element set as a clean array - get: function( num ) { - - // Return all the elements in a clean array - if ( num == null ) { - return slice.call( this ); - } - - // Return just the one element from the set - return num < 0 ? this[ num + this.length ] : this[ num ]; - }, - - // Take an array of elements and push it onto the stack - // (returning the new matched element set) - pushStack: function( elems ) { - - // Build a new jQuery matched element set - var ret = jQuery.merge( this.constructor(), elems ); - - // Add the old object onto the stack (as a reference) - ret.prevObject = this; - - // Return the newly-formed element set - return ret; - }, - - // Execute a callback for every element in the matched set. - each: function( callback ) { - return jQuery.each( this, callback ); - }, - - map: function( callback ) { - return this.pushStack( jQuery.map( this, function( elem, i ) { - return callback.call( elem, i, elem ); - } ) ); - }, - - slice: function() { - return this.pushStack( slice.apply( this, arguments ) ); - }, - - first: function() { - return this.eq( 0 ); - }, - - last: function() { - return this.eq( -1 ); - }, - - even: function() { - return this.pushStack( jQuery.grep( this, function( _elem, i ) { - return ( i + 1 ) % 2; - } ) ); - }, - - odd: function() { - return this.pushStack( jQuery.grep( this, function( _elem, i ) { - return i % 2; - } ) ); - }, - - eq: function( i ) { - var len = this.length, - j = +i + ( i < 0 ? len : 0 ); - return this.pushStack( j >= 0 && j < len ? [ this[ j ] ] : [] ); - }, - - end: function() { - return this.prevObject || this.constructor(); - }, - - // For internal use only. - // Behaves like an Array's method, not like a jQuery method. - push: push, - sort: arr.sort, - splice: arr.splice -}; - -jQuery.extend = jQuery.fn.extend = function() { - var options, name, src, copy, copyIsArray, clone, - target = arguments[ 0 ] || {}, - i = 1, - length = arguments.length, - deep = false; - - // Handle a deep copy situation - if ( typeof target === "boolean" ) { - deep = target; - - // Skip the boolean and the target - target = arguments[ i ] || {}; - i++; - } - - // Handle case when target is a string or something (possible in deep copy) - if ( typeof target !== "object" && !isFunction( target ) ) { - target = {}; - } - - // Extend jQuery itself if only one argument is passed - if ( i === length ) { - target = this; - i--; - } - - for ( ; i < length; i++ ) { - - // Only deal with non-null/undefined values - if ( ( options = arguments[ i ] ) != null ) { - - // Extend the base object - for ( name in options ) { - copy = options[ name ]; - - // Prevent Object.prototype pollution - // Prevent never-ending loop - if ( name === "__proto__" || target === copy ) { - continue; - } - - // Recurse if we're merging plain objects or arrays - if ( deep && copy && ( jQuery.isPlainObject( copy ) || - ( copyIsArray = Array.isArray( copy ) ) ) ) { - src = target[ name ]; - - // Ensure proper type for the source value - if ( copyIsArray && !Array.isArray( src ) ) { - clone = []; - } else if ( !copyIsArray && !jQuery.isPlainObject( src ) ) { - clone = {}; - } else { - clone = src; - } - copyIsArray = false; - - // Never move original objects, clone them - target[ name ] = jQuery.extend( deep, clone, copy ); - - // Don't bring in undefined values - } else if ( copy !== undefined ) { - target[ name ] = copy; - } - } - } - } - - // Return the modified object - return target; -}; - -jQuery.extend( { - - // Unique for each copy of jQuery on the page - expando: "jQuery" + ( version + Math.random() ).replace( /\D/g, "" ), - - // Assume jQuery is ready without the ready module - isReady: true, - - error: function( msg ) { - throw new Error( msg ); - }, - - noop: function() {}, - - isPlainObject: function( obj ) { - var proto, Ctor; - - // Detect obvious negatives - // Use toString instead of jQuery.type to catch host objects - if ( !obj || toString.call( obj ) !== "[object Object]" ) { - return false; - } - - proto = getProto( obj ); - - // Objects with no prototype (e.g., `Object.create( null )`) are plain - if ( !proto ) { - return true; - } - - // Objects with prototype are plain iff they were constructed by a global Object function - Ctor = hasOwn.call( proto, "constructor" ) && proto.constructor; - return typeof Ctor === "function" && fnToString.call( Ctor ) === ObjectFunctionString; - }, - - isEmptyObject: function( obj ) { - var name; - - for ( name in obj ) { - return false; - } - return true; - }, - - // Evaluates a script in a provided context; falls back to the global one - // if not specified. - globalEval: function( code, options, doc ) { - DOMEval( code, { nonce: options && options.nonce }, doc ); - }, - - each: function( obj, callback ) { - var length, i = 0; - - if ( isArrayLike( obj ) ) { - length = obj.length; - for ( ; i < length; i++ ) { - if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) { - break; - } - } - } else { - for ( i in obj ) { - if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) { - break; - } - } - } - - return obj; - }, - - // results is for internal usage only - makeArray: function( arr, results ) { - var ret = results || []; - - if ( arr != null ) { - if ( isArrayLike( Object( arr ) ) ) { - jQuery.merge( ret, - typeof arr === "string" ? - [ arr ] : arr - ); - } else { - push.call( ret, arr ); - } - } - - return ret; - }, - - inArray: function( elem, arr, i ) { - return arr == null ? -1 : indexOf.call( arr, elem, i ); - }, - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - merge: function( first, second ) { - var len = +second.length, - j = 0, - i = first.length; - - for ( ; j < len; j++ ) { - first[ i++ ] = second[ j ]; - } - - first.length = i; - - return first; - }, - - grep: function( elems, callback, invert ) { - var callbackInverse, - matches = [], - i = 0, - length = elems.length, - callbackExpect = !invert; - - // Go through the array, only saving the items - // that pass the validator function - for ( ; i < length; i++ ) { - callbackInverse = !callback( elems[ i ], i ); - if ( callbackInverse !== callbackExpect ) { - matches.push( elems[ i ] ); - } - } - - return matches; - }, - - // arg is for internal usage only - map: function( elems, callback, arg ) { - var length, value, - i = 0, - ret = []; - - // Go through the array, translating each of the items to their new values - if ( isArrayLike( elems ) ) { - length = elems.length; - for ( ; i < length; i++ ) { - value = callback( elems[ i ], i, arg ); - - if ( value != null ) { - ret.push( value ); - } - } - - // Go through every key on the object, - } else { - for ( i in elems ) { - value = callback( elems[ i ], i, arg ); - - if ( value != null ) { - ret.push( value ); - } - } - } - - // Flatten any nested arrays - return flat( ret ); - }, - - // A global GUID counter for objects - guid: 1, - - // jQuery.support is not used in Core but other projects attach their - // properties to it so it needs to exist. - support: support -} ); - -if ( typeof Symbol === "function" ) { - jQuery.fn[ Symbol.iterator ] = arr[ Symbol.iterator ]; -} - -// Populate the class2type map -jQuery.each( "Boolean Number String Function Array Date RegExp Object Error Symbol".split( " " ), -function( _i, name ) { - class2type[ "[object " + name + "]" ] = name.toLowerCase(); -} ); - -function isArrayLike( obj ) { - - // Support: real iOS 8.2 only (not reproducible in simulator) - // `in` check used to prevent JIT error (gh-2145) - // hasOwn isn't used here due to false negatives - // regarding Nodelist length in IE - var length = !!obj && "length" in obj && obj.length, - type = toType( obj ); - - if ( isFunction( obj ) || isWindow( obj ) ) { - return false; - } - - return type === "array" || length === 0 || - typeof length === "number" && length > 0 && ( length - 1 ) in obj; -} -var Sizzle = -/*! - * Sizzle CSS Selector Engine v2.3.5 - * https://sizzlejs.com/ - * - * Copyright JS Foundation and other contributors - * Released under the MIT license - * https://js.foundation/ - * - * Date: 2020-03-14 - */ -( function( window ) { -var i, - support, - Expr, - getText, - isXML, - tokenize, - compile, - select, - outermostContext, - sortInput, - hasDuplicate, - - // Local document vars - setDocument, - document, - docElem, - documentIsHTML, - rbuggyQSA, - rbuggyMatches, - matches, - contains, - - // Instance-specific data - expando = "sizzle" + 1 * new Date(), - preferredDoc = window.document, - dirruns = 0, - done = 0, - classCache = createCache(), - tokenCache = createCache(), - compilerCache = createCache(), - nonnativeSelectorCache = createCache(), - sortOrder = function( a, b ) { - if ( a === b ) { - hasDuplicate = true; - } - return 0; - }, - - // Instance methods - hasOwn = ( {} ).hasOwnProperty, - arr = [], - pop = arr.pop, - pushNative = arr.push, - push = arr.push, - slice = arr.slice, - - // Use a stripped-down indexOf as it's faster than native - // https://jsperf.com/thor-indexof-vs-for/5 - indexOf = function( list, elem ) { - var i = 0, - len = list.length; - for ( ; i < len; i++ ) { - if ( list[ i ] === elem ) { - return i; - } - } - return -1; - }, - - booleans = "checked|selected|async|autofocus|autoplay|controls|defer|disabled|hidden|" + - "ismap|loop|multiple|open|readonly|required|scoped", - - // Regular expressions - - // http://www.w3.org/TR/css3-selectors/#whitespace - whitespace = "[\\x20\\t\\r\\n\\f]", - - // https://www.w3.org/TR/css-syntax-3/#ident-token-diagram - identifier = "(?:\\\\[\\da-fA-F]{1,6}" + whitespace + - "?|\\\\[^\\r\\n\\f]|[\\w-]|[^\0-\\x7f])+", - - // Attribute selectors: http://www.w3.org/TR/selectors/#attribute-selectors - attributes = "\\[" + whitespace + "*(" + identifier + ")(?:" + whitespace + - - // Operator (capture 2) - "*([*^$|!~]?=)" + whitespace + - - // "Attribute values must be CSS identifiers [capture 5] - // or strings [capture 3 or capture 4]" - "*(?:'((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\"|(" + identifier + "))|)" + - whitespace + "*\\]", - - pseudos = ":(" + identifier + ")(?:\\((" + - - // To reduce the number of selectors needing tokenize in the preFilter, prefer arguments: - // 1. quoted (capture 3; capture 4 or capture 5) - "('((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\")|" + - - // 2. simple (capture 6) - "((?:\\\\.|[^\\\\()[\\]]|" + attributes + ")*)|" + - - // 3. anything else (capture 2) - ".*" + - ")\\)|)", - - // Leading and non-escaped trailing whitespace, capturing some non-whitespace characters preceding the latter - rwhitespace = new RegExp( whitespace + "+", "g" ), - rtrim = new RegExp( "^" + whitespace + "+|((?:^|[^\\\\])(?:\\\\.)*)" + - whitespace + "+$", "g" ), - - rcomma = new RegExp( "^" + whitespace + "*," + whitespace + "*" ), - rcombinators = new RegExp( "^" + whitespace + "*([>+~]|" + whitespace + ")" + whitespace + - "*" ), - rdescend = new RegExp( whitespace + "|>" ), - - rpseudo = new RegExp( pseudos ), - ridentifier = new RegExp( "^" + identifier + "$" ), - - matchExpr = { - "ID": new RegExp( "^#(" + identifier + ")" ), - "CLASS": new RegExp( "^\\.(" + identifier + ")" ), - "TAG": new RegExp( "^(" + identifier + "|[*])" ), - "ATTR": new RegExp( "^" + attributes ), - "PSEUDO": new RegExp( "^" + pseudos ), - "CHILD": new RegExp( "^:(only|first|last|nth|nth-last)-(child|of-type)(?:\\(" + - whitespace + "*(even|odd|(([+-]|)(\\d*)n|)" + whitespace + "*(?:([+-]|)" + - whitespace + "*(\\d+)|))" + whitespace + "*\\)|)", "i" ), - "bool": new RegExp( "^(?:" + booleans + ")$", "i" ), - - // For use in libraries implementing .is() - // We use this for POS matching in `select` - "needsContext": new RegExp( "^" + whitespace + - "*[>+~]|:(even|odd|eq|gt|lt|nth|first|last)(?:\\(" + whitespace + - "*((?:-\\d)?\\d*)" + whitespace + "*\\)|)(?=[^-]|$)", "i" ) - }, - - rhtml = /HTML$/i, - rinputs = /^(?:input|select|textarea|button)$/i, - rheader = /^h\d$/i, - - rnative = /^[^{]+\{\s*\[native \w/, - - // Easily-parseable/retrievable ID or TAG or CLASS selectors - rquickExpr = /^(?:#([\w-]+)|(\w+)|\.([\w-]+))$/, - - rsibling = /[+~]/, - - // CSS escapes - // http://www.w3.org/TR/CSS21/syndata.html#escaped-characters - runescape = new RegExp( "\\\\[\\da-fA-F]{1,6}" + whitespace + "?|\\\\([^\\r\\n\\f])", "g" ), - funescape = function( escape, nonHex ) { - var high = "0x" + escape.slice( 1 ) - 0x10000; - - return nonHex ? - - // Strip the backslash prefix from a non-hex escape sequence - nonHex : - - // Replace a hexadecimal escape sequence with the encoded Unicode code point - // Support: IE <=11+ - // For values outside the Basic Multilingual Plane (BMP), manually construct a - // surrogate pair - high < 0 ? - String.fromCharCode( high + 0x10000 ) : - String.fromCharCode( high >> 10 | 0xD800, high & 0x3FF | 0xDC00 ); - }, - - // CSS string/identifier serialization - // https://drafts.csswg.org/cssom/#common-serializing-idioms - rcssescape = /([\0-\x1f\x7f]|^-?\d)|^-$|[^\0-\x1f\x7f-\uFFFF\w-]/g, - fcssescape = function( ch, asCodePoint ) { - if ( asCodePoint ) { - - // U+0000 NULL becomes U+FFFD REPLACEMENT CHARACTER - if ( ch === "\0" ) { - return "\uFFFD"; - } - - // Control characters and (dependent upon position) numbers get escaped as code points - return ch.slice( 0, -1 ) + "\\" + - ch.charCodeAt( ch.length - 1 ).toString( 16 ) + " "; - } - - // Other potentially-special ASCII characters get backslash-escaped - return "\\" + ch; - }, - - // Used for iframes - // See setDocument() - // Removing the function wrapper causes a "Permission Denied" - // error in IE - unloadHandler = function() { - setDocument(); - }, - - inDisabledFieldset = addCombinator( - function( elem ) { - return elem.disabled === true && elem.nodeName.toLowerCase() === "fieldset"; - }, - { dir: "parentNode", next: "legend" } - ); - -// Optimize for push.apply( _, NodeList ) -try { - push.apply( - ( arr = slice.call( preferredDoc.childNodes ) ), - preferredDoc.childNodes - ); - - // Support: Android<4.0 - // Detect silently failing push.apply - // eslint-disable-next-line no-unused-expressions - arr[ preferredDoc.childNodes.length ].nodeType; -} catch ( e ) { - push = { apply: arr.length ? - - // Leverage slice if possible - function( target, els ) { - pushNative.apply( target, slice.call( els ) ); - } : - - // Support: IE<9 - // Otherwise append directly - function( target, els ) { - var j = target.length, - i = 0; - - // Can't trust NodeList.length - while ( ( target[ j++ ] = els[ i++ ] ) ) {} - target.length = j - 1; - } - }; -} - -function Sizzle( selector, context, results, seed ) { - var m, i, elem, nid, match, groups, newSelector, - newContext = context && context.ownerDocument, - - // nodeType defaults to 9, since context defaults to document - nodeType = context ? context.nodeType : 9; - - results = results || []; - - // Return early from calls with invalid selector or context - if ( typeof selector !== "string" || !selector || - nodeType !== 1 && nodeType !== 9 && nodeType !== 11 ) { - - return results; - } - - // Try to shortcut find operations (as opposed to filters) in HTML documents - if ( !seed ) { - setDocument( context ); - context = context || document; - - if ( documentIsHTML ) { - - // If the selector is sufficiently simple, try using a "get*By*" DOM method - // (excepting DocumentFragment context, where the methods don't exist) - if ( nodeType !== 11 && ( match = rquickExpr.exec( selector ) ) ) { - - // ID selector - if ( ( m = match[ 1 ] ) ) { - - // Document context - if ( nodeType === 9 ) { - if ( ( elem = context.getElementById( m ) ) ) { - - // Support: IE, Opera, Webkit - // TODO: identify versions - // getElementById can match elements by name instead of ID - if ( elem.id === m ) { - results.push( elem ); - return results; - } - } else { - return results; - } - - // Element context - } else { - - // Support: IE, Opera, Webkit - // TODO: identify versions - // getElementById can match elements by name instead of ID - if ( newContext && ( elem = newContext.getElementById( m ) ) && - contains( context, elem ) && - elem.id === m ) { - - results.push( elem ); - return results; - } - } - - // Type selector - } else if ( match[ 2 ] ) { - push.apply( results, context.getElementsByTagName( selector ) ); - return results; - - // Class selector - } else if ( ( m = match[ 3 ] ) && support.getElementsByClassName && - context.getElementsByClassName ) { - - push.apply( results, context.getElementsByClassName( m ) ); - return results; - } - } - - // Take advantage of querySelectorAll - if ( support.qsa && - !nonnativeSelectorCache[ selector + " " ] && - ( !rbuggyQSA || !rbuggyQSA.test( selector ) ) && - - // Support: IE 8 only - // Exclude object elements - ( nodeType !== 1 || context.nodeName.toLowerCase() !== "object" ) ) { - - newSelector = selector; - newContext = context; - - // qSA considers elements outside a scoping root when evaluating child or - // descendant combinators, which is not what we want. - // In such cases, we work around the behavior by prefixing every selector in the - // list with an ID selector referencing the scope context. - // The technique has to be used as well when a leading combinator is used - // as such selectors are not recognized by querySelectorAll. - // Thanks to Andrew Dupont for this technique. - if ( nodeType === 1 && - ( rdescend.test( selector ) || rcombinators.test( selector ) ) ) { - - // Expand context for sibling selectors - newContext = rsibling.test( selector ) && testContext( context.parentNode ) || - context; - - // We can use :scope instead of the ID hack if the browser - // supports it & if we're not changing the context. - if ( newContext !== context || !support.scope ) { - - // Capture the context ID, setting it first if necessary - if ( ( nid = context.getAttribute( "id" ) ) ) { - nid = nid.replace( rcssescape, fcssescape ); - } else { - context.setAttribute( "id", ( nid = expando ) ); - } - } - - // Prefix every selector in the list - groups = tokenize( selector ); - i = groups.length; - while ( i-- ) { - groups[ i ] = ( nid ? "#" + nid : ":scope" ) + " " + - toSelector( groups[ i ] ); - } - newSelector = groups.join( "," ); - } - - try { - push.apply( results, - newContext.querySelectorAll( newSelector ) - ); - return results; - } catch ( qsaError ) { - nonnativeSelectorCache( selector, true ); - } finally { - if ( nid === expando ) { - context.removeAttribute( "id" ); - } - } - } - } - } - - // All others - return select( selector.replace( rtrim, "$1" ), context, results, seed ); -} - -/** - * Create key-value caches of limited size - * @returns {function(string, object)} Returns the Object data after storing it on itself with - * property name the (space-suffixed) string and (if the cache is larger than Expr.cacheLength) - * deleting the oldest entry - */ -function createCache() { - var keys = []; - - function cache( key, value ) { - - // Use (key + " ") to avoid collision with native prototype properties (see Issue #157) - if ( keys.push( key + " " ) > Expr.cacheLength ) { - - // Only keep the most recent entries - delete cache[ keys.shift() ]; - } - return ( cache[ key + " " ] = value ); - } - return cache; -} - -/** - * Mark a function for special use by Sizzle - * @param {Function} fn The function to mark - */ -function markFunction( fn ) { - fn[ expando ] = true; - return fn; -} - -/** - * Support testing using an element - * @param {Function} fn Passed the created element and returns a boolean result - */ -function assert( fn ) { - var el = document.createElement( "fieldset" ); - - try { - return !!fn( el ); - } catch ( e ) { - return false; - } finally { - - // Remove from its parent by default - if ( el.parentNode ) { - el.parentNode.removeChild( el ); - } - - // release memory in IE - el = null; - } -} - -/** - * Adds the same handler for all of the specified attrs - * @param {String} attrs Pipe-separated list of attributes - * @param {Function} handler The method that will be applied - */ -function addHandle( attrs, handler ) { - var arr = attrs.split( "|" ), - i = arr.length; - - while ( i-- ) { - Expr.attrHandle[ arr[ i ] ] = handler; - } -} - -/** - * Checks document order of two siblings - * @param {Element} a - * @param {Element} b - * @returns {Number} Returns less than 0 if a precedes b, greater than 0 if a follows b - */ -function siblingCheck( a, b ) { - var cur = b && a, - diff = cur && a.nodeType === 1 && b.nodeType === 1 && - a.sourceIndex - b.sourceIndex; - - // Use IE sourceIndex if available on both nodes - if ( diff ) { - return diff; - } - - // Check if b follows a - if ( cur ) { - while ( ( cur = cur.nextSibling ) ) { - if ( cur === b ) { - return -1; - } - } - } - - return a ? 1 : -1; -} - -/** - * Returns a function to use in pseudos for input types - * @param {String} type - */ -function createInputPseudo( type ) { - return function( elem ) { - var name = elem.nodeName.toLowerCase(); - return name === "input" && elem.type === type; - }; -} - -/** - * Returns a function to use in pseudos for buttons - * @param {String} type - */ -function createButtonPseudo( type ) { - return function( elem ) { - var name = elem.nodeName.toLowerCase(); - return ( name === "input" || name === "button" ) && elem.type === type; - }; -} - -/** - * Returns a function to use in pseudos for :enabled/:disabled - * @param {Boolean} disabled true for :disabled; false for :enabled - */ -function createDisabledPseudo( disabled ) { - - // Known :disabled false positives: fieldset[disabled] > legend:nth-of-type(n+2) :can-disable - return function( elem ) { - - // Only certain elements can match :enabled or :disabled - // https://html.spec.whatwg.org/multipage/scripting.html#selector-enabled - // https://html.spec.whatwg.org/multipage/scripting.html#selector-disabled - if ( "form" in elem ) { - - // Check for inherited disabledness on relevant non-disabled elements: - // * listed form-associated elements in a disabled fieldset - // https://html.spec.whatwg.org/multipage/forms.html#category-listed - // https://html.spec.whatwg.org/multipage/forms.html#concept-fe-disabled - // * option elements in a disabled optgroup - // https://html.spec.whatwg.org/multipage/forms.html#concept-option-disabled - // All such elements have a "form" property. - if ( elem.parentNode && elem.disabled === false ) { - - // Option elements defer to a parent optgroup if present - if ( "label" in elem ) { - if ( "label" in elem.parentNode ) { - return elem.parentNode.disabled === disabled; - } else { - return elem.disabled === disabled; - } - } - - // Support: IE 6 - 11 - // Use the isDisabled shortcut property to check for disabled fieldset ancestors - return elem.isDisabled === disabled || - - // Where there is no isDisabled, check manually - /* jshint -W018 */ - elem.isDisabled !== !disabled && - inDisabledFieldset( elem ) === disabled; - } - - return elem.disabled === disabled; - - // Try to winnow out elements that can't be disabled before trusting the disabled property. - // Some victims get caught in our net (label, legend, menu, track), but it shouldn't - // even exist on them, let alone have a boolean value. - } else if ( "label" in elem ) { - return elem.disabled === disabled; - } - - // Remaining elements are neither :enabled nor :disabled - return false; - }; -} - -/** - * Returns a function to use in pseudos for positionals - * @param {Function} fn - */ -function createPositionalPseudo( fn ) { - return markFunction( function( argument ) { - argument = +argument; - return markFunction( function( seed, matches ) { - var j, - matchIndexes = fn( [], seed.length, argument ), - i = matchIndexes.length; - - // Match elements found at the specified indexes - while ( i-- ) { - if ( seed[ ( j = matchIndexes[ i ] ) ] ) { - seed[ j ] = !( matches[ j ] = seed[ j ] ); - } - } - } ); - } ); -} - -/** - * Checks a node for validity as a Sizzle context - * @param {Element|Object=} context - * @returns {Element|Object|Boolean} The input node if acceptable, otherwise a falsy value - */ -function testContext( context ) { - return context && typeof context.getElementsByTagName !== "undefined" && context; -} - -// Expose support vars for convenience -support = Sizzle.support = {}; - -/** - * Detects XML nodes - * @param {Element|Object} elem An element or a document - * @returns {Boolean} True iff elem is a non-HTML XML node - */ -isXML = Sizzle.isXML = function( elem ) { - var namespace = elem.namespaceURI, - docElem = ( elem.ownerDocument || elem ).documentElement; - - // Support: IE <=8 - // Assume HTML when documentElement doesn't yet exist, such as inside loading iframes - // https://bugs.jquery.com/ticket/4833 - return !rhtml.test( namespace || docElem && docElem.nodeName || "HTML" ); -}; - -/** - * Sets document-related variables once based on the current document - * @param {Element|Object} [doc] An element or document object to use to set the document - * @returns {Object} Returns the current document - */ -setDocument = Sizzle.setDocument = function( node ) { - var hasCompare, subWindow, - doc = node ? node.ownerDocument || node : preferredDoc; - - // Return early if doc is invalid or already selected - // Support: IE 11+, Edge 17 - 18+ - // IE/Edge sometimes throw a "Permission denied" error when strict-comparing - // two documents; shallow comparisons work. - // eslint-disable-next-line eqeqeq - if ( doc == document || doc.nodeType !== 9 || !doc.documentElement ) { - return document; - } - - // Update global variables - document = doc; - docElem = document.documentElement; - documentIsHTML = !isXML( document ); - - // Support: IE 9 - 11+, Edge 12 - 18+ - // Accessing iframe documents after unload throws "permission denied" errors (jQuery #13936) - // Support: IE 11+, Edge 17 - 18+ - // IE/Edge sometimes throw a "Permission denied" error when strict-comparing - // two documents; shallow comparisons work. - // eslint-disable-next-line eqeqeq - if ( preferredDoc != document && - ( subWindow = document.defaultView ) && subWindow.top !== subWindow ) { - - // Support: IE 11, Edge - if ( subWindow.addEventListener ) { - subWindow.addEventListener( "unload", unloadHandler, false ); - - // Support: IE 9 - 10 only - } else if ( subWindow.attachEvent ) { - subWindow.attachEvent( "onunload", unloadHandler ); - } - } - - // Support: IE 8 - 11+, Edge 12 - 18+, Chrome <=16 - 25 only, Firefox <=3.6 - 31 only, - // Safari 4 - 5 only, Opera <=11.6 - 12.x only - // IE/Edge & older browsers don't support the :scope pseudo-class. - // Support: Safari 6.0 only - // Safari 6.0 supports :scope but it's an alias of :root there. - support.scope = assert( function( el ) { - docElem.appendChild( el ).appendChild( document.createElement( "div" ) ); - return typeof el.querySelectorAll !== "undefined" && - !el.querySelectorAll( ":scope fieldset div" ).length; - } ); - - /* Attributes - ---------------------------------------------------------------------- */ - - // Support: IE<8 - // Verify that getAttribute really returns attributes and not properties - // (excepting IE8 booleans) - support.attributes = assert( function( el ) { - el.className = "i"; - return !el.getAttribute( "className" ); - } ); - - /* getElement(s)By* - ---------------------------------------------------------------------- */ - - // Check if getElementsByTagName("*") returns only elements - support.getElementsByTagName = assert( function( el ) { - el.appendChild( document.createComment( "" ) ); - return !el.getElementsByTagName( "*" ).length; - } ); - - // Support: IE<9 - support.getElementsByClassName = rnative.test( document.getElementsByClassName ); - - // Support: IE<10 - // Check if getElementById returns elements by name - // The broken getElementById methods don't pick up programmatically-set names, - // so use a roundabout getElementsByName test - support.getById = assert( function( el ) { - docElem.appendChild( el ).id = expando; - return !document.getElementsByName || !document.getElementsByName( expando ).length; - } ); - - // ID filter and find - if ( support.getById ) { - Expr.filter[ "ID" ] = function( id ) { - var attrId = id.replace( runescape, funescape ); - return function( elem ) { - return elem.getAttribute( "id" ) === attrId; - }; - }; - Expr.find[ "ID" ] = function( id, context ) { - if ( typeof context.getElementById !== "undefined" && documentIsHTML ) { - var elem = context.getElementById( id ); - return elem ? [ elem ] : []; - } - }; - } else { - Expr.filter[ "ID" ] = function( id ) { - var attrId = id.replace( runescape, funescape ); - return function( elem ) { - var node = typeof elem.getAttributeNode !== "undefined" && - elem.getAttributeNode( "id" ); - return node && node.value === attrId; - }; - }; - - // Support: IE 6 - 7 only - // getElementById is not reliable as a find shortcut - Expr.find[ "ID" ] = function( id, context ) { - if ( typeof context.getElementById !== "undefined" && documentIsHTML ) { - var node, i, elems, - elem = context.getElementById( id ); - - if ( elem ) { - - // Verify the id attribute - node = elem.getAttributeNode( "id" ); - if ( node && node.value === id ) { - return [ elem ]; - } - - // Fall back on getElementsByName - elems = context.getElementsByName( id ); - i = 0; - while ( ( elem = elems[ i++ ] ) ) { - node = elem.getAttributeNode( "id" ); - if ( node && node.value === id ) { - return [ elem ]; - } - } - } - - return []; - } - }; - } - - // Tag - Expr.find[ "TAG" ] = support.getElementsByTagName ? - function( tag, context ) { - if ( typeof context.getElementsByTagName !== "undefined" ) { - return context.getElementsByTagName( tag ); - - // DocumentFragment nodes don't have gEBTN - } else if ( support.qsa ) { - return context.querySelectorAll( tag ); - } - } : - - function( tag, context ) { - var elem, - tmp = [], - i = 0, - - // By happy coincidence, a (broken) gEBTN appears on DocumentFragment nodes too - results = context.getElementsByTagName( tag ); - - // Filter out possible comments - if ( tag === "*" ) { - while ( ( elem = results[ i++ ] ) ) { - if ( elem.nodeType === 1 ) { - tmp.push( elem ); - } - } - - return tmp; - } - return results; - }; - - // Class - Expr.find[ "CLASS" ] = support.getElementsByClassName && function( className, context ) { - if ( typeof context.getElementsByClassName !== "undefined" && documentIsHTML ) { - return context.getElementsByClassName( className ); - } - }; - - /* QSA/matchesSelector - ---------------------------------------------------------------------- */ - - // QSA and matchesSelector support - - // matchesSelector(:active) reports false when true (IE9/Opera 11.5) - rbuggyMatches = []; - - // qSa(:focus) reports false when true (Chrome 21) - // We allow this because of a bug in IE8/9 that throws an error - // whenever `document.activeElement` is accessed on an iframe - // So, we allow :focus to pass through QSA all the time to avoid the IE error - // See https://bugs.jquery.com/ticket/13378 - rbuggyQSA = []; - - if ( ( support.qsa = rnative.test( document.querySelectorAll ) ) ) { - - // Build QSA regex - // Regex strategy adopted from Diego Perini - assert( function( el ) { - - var input; - - // Select is set to empty string on purpose - // This is to test IE's treatment of not explicitly - // setting a boolean content attribute, - // since its presence should be enough - // https://bugs.jquery.com/ticket/12359 - docElem.appendChild( el ).innerHTML = "" + - ""; - - // Support: IE8, Opera 11-12.16 - // Nothing should be selected when empty strings follow ^= or $= or *= - // The test attribute must be unknown in Opera but "safe" for WinRT - // https://msdn.microsoft.com/en-us/library/ie/hh465388.aspx#attribute_section - if ( el.querySelectorAll( "[msallowcapture^='']" ).length ) { - rbuggyQSA.push( "[*^$]=" + whitespace + "*(?:''|\"\")" ); - } - - // Support: IE8 - // Boolean attributes and "value" are not treated correctly - if ( !el.querySelectorAll( "[selected]" ).length ) { - rbuggyQSA.push( "\\[" + whitespace + "*(?:value|" + booleans + ")" ); - } - - // Support: Chrome<29, Android<4.4, Safari<7.0+, iOS<7.0+, PhantomJS<1.9.8+ - if ( !el.querySelectorAll( "[id~=" + expando + "-]" ).length ) { - rbuggyQSA.push( "~=" ); - } - - // Support: IE 11+, Edge 15 - 18+ - // IE 11/Edge don't find elements on a `[name='']` query in some cases. - // Adding a temporary attribute to the document before the selection works - // around the issue. - // Interestingly, IE 10 & older don't seem to have the issue. - input = document.createElement( "input" ); - input.setAttribute( "name", "" ); - el.appendChild( input ); - if ( !el.querySelectorAll( "[name='']" ).length ) { - rbuggyQSA.push( "\\[" + whitespace + "*name" + whitespace + "*=" + - whitespace + "*(?:''|\"\")" ); - } - - // Webkit/Opera - :checked should return selected option elements - // http://www.w3.org/TR/2011/REC-css3-selectors-20110929/#checked - // IE8 throws error here and will not see later tests - if ( !el.querySelectorAll( ":checked" ).length ) { - rbuggyQSA.push( ":checked" ); - } - - // Support: Safari 8+, iOS 8+ - // https://bugs.webkit.org/show_bug.cgi?id=136851 - // In-page `selector#id sibling-combinator selector` fails - if ( !el.querySelectorAll( "a#" + expando + "+*" ).length ) { - rbuggyQSA.push( ".#.+[+~]" ); - } - - // Support: Firefox <=3.6 - 5 only - // Old Firefox doesn't throw on a badly-escaped identifier. - el.querySelectorAll( "\\\f" ); - rbuggyQSA.push( "[\\r\\n\\f]" ); - } ); - - assert( function( el ) { - el.innerHTML = "" + - ""; - - // Support: Windows 8 Native Apps - // The type and name attributes are restricted during .innerHTML assignment - var input = document.createElement( "input" ); - input.setAttribute( "type", "hidden" ); - el.appendChild( input ).setAttribute( "name", "D" ); - - // Support: IE8 - // Enforce case-sensitivity of name attribute - if ( el.querySelectorAll( "[name=d]" ).length ) { - rbuggyQSA.push( "name" + whitespace + "*[*^$|!~]?=" ); - } - - // FF 3.5 - :enabled/:disabled and hidden elements (hidden elements are still enabled) - // IE8 throws error here and will not see later tests - if ( el.querySelectorAll( ":enabled" ).length !== 2 ) { - rbuggyQSA.push( ":enabled", ":disabled" ); - } - - // Support: IE9-11+ - // IE's :disabled selector does not pick up the children of disabled fieldsets - docElem.appendChild( el ).disabled = true; - if ( el.querySelectorAll( ":disabled" ).length !== 2 ) { - rbuggyQSA.push( ":enabled", ":disabled" ); - } - - // Support: Opera 10 - 11 only - // Opera 10-11 does not throw on post-comma invalid pseudos - el.querySelectorAll( "*,:x" ); - rbuggyQSA.push( ",.*:" ); - } ); - } - - if ( ( support.matchesSelector = rnative.test( ( matches = docElem.matches || - docElem.webkitMatchesSelector || - docElem.mozMatchesSelector || - docElem.oMatchesSelector || - docElem.msMatchesSelector ) ) ) ) { - - assert( function( el ) { - - // Check to see if it's possible to do matchesSelector - // on a disconnected node (IE 9) - support.disconnectedMatch = matches.call( el, "*" ); - - // This should fail with an exception - // Gecko does not error, returns false instead - matches.call( el, "[s!='']:x" ); - rbuggyMatches.push( "!=", pseudos ); - } ); - } - - rbuggyQSA = rbuggyQSA.length && new RegExp( rbuggyQSA.join( "|" ) ); - rbuggyMatches = rbuggyMatches.length && new RegExp( rbuggyMatches.join( "|" ) ); - - /* Contains - ---------------------------------------------------------------------- */ - hasCompare = rnative.test( docElem.compareDocumentPosition ); - - // Element contains another - // Purposefully self-exclusive - // As in, an element does not contain itself - contains = hasCompare || rnative.test( docElem.contains ) ? - function( a, b ) { - var adown = a.nodeType === 9 ? a.documentElement : a, - bup = b && b.parentNode; - return a === bup || !!( bup && bup.nodeType === 1 && ( - adown.contains ? - adown.contains( bup ) : - a.compareDocumentPosition && a.compareDocumentPosition( bup ) & 16 - ) ); - } : - function( a, b ) { - if ( b ) { - while ( ( b = b.parentNode ) ) { - if ( b === a ) { - return true; - } - } - } - return false; - }; - - /* Sorting - ---------------------------------------------------------------------- */ - - // Document order sorting - sortOrder = hasCompare ? - function( a, b ) { - - // Flag for duplicate removal - if ( a === b ) { - hasDuplicate = true; - return 0; - } - - // Sort on method existence if only one input has compareDocumentPosition - var compare = !a.compareDocumentPosition - !b.compareDocumentPosition; - if ( compare ) { - return compare; - } - - // Calculate position if both inputs belong to the same document - // Support: IE 11+, Edge 17 - 18+ - // IE/Edge sometimes throw a "Permission denied" error when strict-comparing - // two documents; shallow comparisons work. - // eslint-disable-next-line eqeqeq - compare = ( a.ownerDocument || a ) == ( b.ownerDocument || b ) ? - a.compareDocumentPosition( b ) : - - // Otherwise we know they are disconnected - 1; - - // Disconnected nodes - if ( compare & 1 || - ( !support.sortDetached && b.compareDocumentPosition( a ) === compare ) ) { - - // Choose the first element that is related to our preferred document - // Support: IE 11+, Edge 17 - 18+ - // IE/Edge sometimes throw a "Permission denied" error when strict-comparing - // two documents; shallow comparisons work. - // eslint-disable-next-line eqeqeq - if ( a == document || a.ownerDocument == preferredDoc && - contains( preferredDoc, a ) ) { - return -1; - } - - // Support: IE 11+, Edge 17 - 18+ - // IE/Edge sometimes throw a "Permission denied" error when strict-comparing - // two documents; shallow comparisons work. - // eslint-disable-next-line eqeqeq - if ( b == document || b.ownerDocument == preferredDoc && - contains( preferredDoc, b ) ) { - return 1; - } - - // Maintain original order - return sortInput ? - ( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) : - 0; - } - - return compare & 4 ? -1 : 1; - } : - function( a, b ) { - - // Exit early if the nodes are identical - if ( a === b ) { - hasDuplicate = true; - return 0; - } - - var cur, - i = 0, - aup = a.parentNode, - bup = b.parentNode, - ap = [ a ], - bp = [ b ]; - - // Parentless nodes are either documents or disconnected - if ( !aup || !bup ) { - - // Support: IE 11+, Edge 17 - 18+ - // IE/Edge sometimes throw a "Permission denied" error when strict-comparing - // two documents; shallow comparisons work. - /* eslint-disable eqeqeq */ - return a == document ? -1 : - b == document ? 1 : - /* eslint-enable eqeqeq */ - aup ? -1 : - bup ? 1 : - sortInput ? - ( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) : - 0; - - // If the nodes are siblings, we can do a quick check - } else if ( aup === bup ) { - return siblingCheck( a, b ); - } - - // Otherwise we need full lists of their ancestors for comparison - cur = a; - while ( ( cur = cur.parentNode ) ) { - ap.unshift( cur ); - } - cur = b; - while ( ( cur = cur.parentNode ) ) { - bp.unshift( cur ); - } - - // Walk down the tree looking for a discrepancy - while ( ap[ i ] === bp[ i ] ) { - i++; - } - - return i ? - - // Do a sibling check if the nodes have a common ancestor - siblingCheck( ap[ i ], bp[ i ] ) : - - // Otherwise nodes in our document sort first - // Support: IE 11+, Edge 17 - 18+ - // IE/Edge sometimes throw a "Permission denied" error when strict-comparing - // two documents; shallow comparisons work. - /* eslint-disable eqeqeq */ - ap[ i ] == preferredDoc ? -1 : - bp[ i ] == preferredDoc ? 1 : - /* eslint-enable eqeqeq */ - 0; - }; - - return document; -}; - -Sizzle.matches = function( expr, elements ) { - return Sizzle( expr, null, null, elements ); -}; - -Sizzle.matchesSelector = function( elem, expr ) { - setDocument( elem ); - - if ( support.matchesSelector && documentIsHTML && - !nonnativeSelectorCache[ expr + " " ] && - ( !rbuggyMatches || !rbuggyMatches.test( expr ) ) && - ( !rbuggyQSA || !rbuggyQSA.test( expr ) ) ) { - - try { - var ret = matches.call( elem, expr ); - - // IE 9's matchesSelector returns false on disconnected nodes - if ( ret || support.disconnectedMatch || - - // As well, disconnected nodes are said to be in a document - // fragment in IE 9 - elem.document && elem.document.nodeType !== 11 ) { - return ret; - } - } catch ( e ) { - nonnativeSelectorCache( expr, true ); - } - } - - return Sizzle( expr, document, null, [ elem ] ).length > 0; -}; - -Sizzle.contains = function( context, elem ) { - - // Set document vars if needed - // Support: IE 11+, Edge 17 - 18+ - // IE/Edge sometimes throw a "Permission denied" error when strict-comparing - // two documents; shallow comparisons work. - // eslint-disable-next-line eqeqeq - if ( ( context.ownerDocument || context ) != document ) { - setDocument( context ); - } - return contains( context, elem ); -}; - -Sizzle.attr = function( elem, name ) { - - // Set document vars if needed - // Support: IE 11+, Edge 17 - 18+ - // IE/Edge sometimes throw a "Permission denied" error when strict-comparing - // two documents; shallow comparisons work. - // eslint-disable-next-line eqeqeq - if ( ( elem.ownerDocument || elem ) != document ) { - setDocument( elem ); - } - - var fn = Expr.attrHandle[ name.toLowerCase() ], - - // Don't get fooled by Object.prototype properties (jQuery #13807) - val = fn && hasOwn.call( Expr.attrHandle, name.toLowerCase() ) ? - fn( elem, name, !documentIsHTML ) : - undefined; - - return val !== undefined ? - val : - support.attributes || !documentIsHTML ? - elem.getAttribute( name ) : - ( val = elem.getAttributeNode( name ) ) && val.specified ? - val.value : - null; -}; - -Sizzle.escape = function( sel ) { - return ( sel + "" ).replace( rcssescape, fcssescape ); -}; - -Sizzle.error = function( msg ) { - throw new Error( "Syntax error, unrecognized expression: " + msg ); -}; - -/** - * Document sorting and removing duplicates - * @param {ArrayLike} results - */ -Sizzle.uniqueSort = function( results ) { - var elem, - duplicates = [], - j = 0, - i = 0; - - // Unless we *know* we can detect duplicates, assume their presence - hasDuplicate = !support.detectDuplicates; - sortInput = !support.sortStable && results.slice( 0 ); - results.sort( sortOrder ); - - if ( hasDuplicate ) { - while ( ( elem = results[ i++ ] ) ) { - if ( elem === results[ i ] ) { - j = duplicates.push( i ); - } - } - while ( j-- ) { - results.splice( duplicates[ j ], 1 ); - } - } - - // Clear input after sorting to release objects - // See https://github.com/jquery/sizzle/pull/225 - sortInput = null; - - return results; -}; - -/** - * Utility function for retrieving the text value of an array of DOM nodes - * @param {Array|Element} elem - */ -getText = Sizzle.getText = function( elem ) { - var node, - ret = "", - i = 0, - nodeType = elem.nodeType; - - if ( !nodeType ) { - - // If no nodeType, this is expected to be an array - while ( ( node = elem[ i++ ] ) ) { - - // Do not traverse comment nodes - ret += getText( node ); - } - } else if ( nodeType === 1 || nodeType === 9 || nodeType === 11 ) { - - // Use textContent for elements - // innerText usage removed for consistency of new lines (jQuery #11153) - if ( typeof elem.textContent === "string" ) { - return elem.textContent; - } else { - - // Traverse its children - for ( elem = elem.firstChild; elem; elem = elem.nextSibling ) { - ret += getText( elem ); - } - } - } else if ( nodeType === 3 || nodeType === 4 ) { - return elem.nodeValue; - } - - // Do not include comment or processing instruction nodes - - return ret; -}; - -Expr = Sizzle.selectors = { - - // Can be adjusted by the user - cacheLength: 50, - - createPseudo: markFunction, - - match: matchExpr, - - attrHandle: {}, - - find: {}, - - relative: { - ">": { dir: "parentNode", first: true }, - " ": { dir: "parentNode" }, - "+": { dir: "previousSibling", first: true }, - "~": { dir: "previousSibling" } - }, - - preFilter: { - "ATTR": function( match ) { - match[ 1 ] = match[ 1 ].replace( runescape, funescape ); - - // Move the given value to match[3] whether quoted or unquoted - match[ 3 ] = ( match[ 3 ] || match[ 4 ] || - match[ 5 ] || "" ).replace( runescape, funescape ); - - if ( match[ 2 ] === "~=" ) { - match[ 3 ] = " " + match[ 3 ] + " "; - } - - return match.slice( 0, 4 ); - }, - - "CHILD": function( match ) { - - /* matches from matchExpr["CHILD"] - 1 type (only|nth|...) - 2 what (child|of-type) - 3 argument (even|odd|\d*|\d*n([+-]\d+)?|...) - 4 xn-component of xn+y argument ([+-]?\d*n|) - 5 sign of xn-component - 6 x of xn-component - 7 sign of y-component - 8 y of y-component - */ - match[ 1 ] = match[ 1 ].toLowerCase(); - - if ( match[ 1 ].slice( 0, 3 ) === "nth" ) { - - // nth-* requires argument - if ( !match[ 3 ] ) { - Sizzle.error( match[ 0 ] ); - } - - // numeric x and y parameters for Expr.filter.CHILD - // remember that false/true cast respectively to 0/1 - match[ 4 ] = +( match[ 4 ] ? - match[ 5 ] + ( match[ 6 ] || 1 ) : - 2 * ( match[ 3 ] === "even" || match[ 3 ] === "odd" ) ); - match[ 5 ] = +( ( match[ 7 ] + match[ 8 ] ) || match[ 3 ] === "odd" ); - - // other types prohibit arguments - } else if ( match[ 3 ] ) { - Sizzle.error( match[ 0 ] ); - } - - return match; - }, - - "PSEUDO": function( match ) { - var excess, - unquoted = !match[ 6 ] && match[ 2 ]; - - if ( matchExpr[ "CHILD" ].test( match[ 0 ] ) ) { - return null; - } - - // Accept quoted arguments as-is - if ( match[ 3 ] ) { - match[ 2 ] = match[ 4 ] || match[ 5 ] || ""; - - // Strip excess characters from unquoted arguments - } else if ( unquoted && rpseudo.test( unquoted ) && - - // Get excess from tokenize (recursively) - ( excess = tokenize( unquoted, true ) ) && - - // advance to the next closing parenthesis - ( excess = unquoted.indexOf( ")", unquoted.length - excess ) - unquoted.length ) ) { - - // excess is a negative index - match[ 0 ] = match[ 0 ].slice( 0, excess ); - match[ 2 ] = unquoted.slice( 0, excess ); - } - - // Return only captures needed by the pseudo filter method (type and argument) - return match.slice( 0, 3 ); - } - }, - - filter: { - - "TAG": function( nodeNameSelector ) { - var nodeName = nodeNameSelector.replace( runescape, funescape ).toLowerCase(); - return nodeNameSelector === "*" ? - function() { - return true; - } : - function( elem ) { - return elem.nodeName && elem.nodeName.toLowerCase() === nodeName; - }; - }, - - "CLASS": function( className ) { - var pattern = classCache[ className + " " ]; - - return pattern || - ( pattern = new RegExp( "(^|" + whitespace + - ")" + className + "(" + whitespace + "|$)" ) ) && classCache( - className, function( elem ) { - return pattern.test( - typeof elem.className === "string" && elem.className || - typeof elem.getAttribute !== "undefined" && - elem.getAttribute( "class" ) || - "" - ); - } ); - }, - - "ATTR": function( name, operator, check ) { - return function( elem ) { - var result = Sizzle.attr( elem, name ); - - if ( result == null ) { - return operator === "!="; - } - if ( !operator ) { - return true; - } - - result += ""; - - /* eslint-disable max-len */ - - return operator === "=" ? result === check : - operator === "!=" ? result !== check : - operator === "^=" ? check && result.indexOf( check ) === 0 : - operator === "*=" ? check && result.indexOf( check ) > -1 : - operator === "$=" ? check && result.slice( -check.length ) === check : - operator === "~=" ? ( " " + result.replace( rwhitespace, " " ) + " " ).indexOf( check ) > -1 : - operator === "|=" ? result === check || result.slice( 0, check.length + 1 ) === check + "-" : - false; - /* eslint-enable max-len */ - - }; - }, - - "CHILD": function( type, what, _argument, first, last ) { - var simple = type.slice( 0, 3 ) !== "nth", - forward = type.slice( -4 ) !== "last", - ofType = what === "of-type"; - - return first === 1 && last === 0 ? - - // Shortcut for :nth-*(n) - function( elem ) { - return !!elem.parentNode; - } : - - function( elem, _context, xml ) { - var cache, uniqueCache, outerCache, node, nodeIndex, start, - dir = simple !== forward ? "nextSibling" : "previousSibling", - parent = elem.parentNode, - name = ofType && elem.nodeName.toLowerCase(), - useCache = !xml && !ofType, - diff = false; - - if ( parent ) { - - // :(first|last|only)-(child|of-type) - if ( simple ) { - while ( dir ) { - node = elem; - while ( ( node = node[ dir ] ) ) { - if ( ofType ? - node.nodeName.toLowerCase() === name : - node.nodeType === 1 ) { - - return false; - } - } - - // Reverse direction for :only-* (if we haven't yet done so) - start = dir = type === "only" && !start && "nextSibling"; - } - return true; - } - - start = [ forward ? parent.firstChild : parent.lastChild ]; - - // non-xml :nth-child(...) stores cache data on `parent` - if ( forward && useCache ) { - - // Seek `elem` from a previously-cached index - - // ...in a gzip-friendly way - node = parent; - outerCache = node[ expando ] || ( node[ expando ] = {} ); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ node.uniqueID ] || - ( outerCache[ node.uniqueID ] = {} ); - - cache = uniqueCache[ type ] || []; - nodeIndex = cache[ 0 ] === dirruns && cache[ 1 ]; - diff = nodeIndex && cache[ 2 ]; - node = nodeIndex && parent.childNodes[ nodeIndex ]; - - while ( ( node = ++nodeIndex && node && node[ dir ] || - - // Fallback to seeking `elem` from the start - ( diff = nodeIndex = 0 ) || start.pop() ) ) { - - // When found, cache indexes on `parent` and break - if ( node.nodeType === 1 && ++diff && node === elem ) { - uniqueCache[ type ] = [ dirruns, nodeIndex, diff ]; - break; - } - } - - } else { - - // Use previously-cached element index if available - if ( useCache ) { - - // ...in a gzip-friendly way - node = elem; - outerCache = node[ expando ] || ( node[ expando ] = {} ); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ node.uniqueID ] || - ( outerCache[ node.uniqueID ] = {} ); - - cache = uniqueCache[ type ] || []; - nodeIndex = cache[ 0 ] === dirruns && cache[ 1 ]; - diff = nodeIndex; - } - - // xml :nth-child(...) - // or :nth-last-child(...) or :nth(-last)?-of-type(...) - if ( diff === false ) { - - // Use the same loop as above to seek `elem` from the start - while ( ( node = ++nodeIndex && node && node[ dir ] || - ( diff = nodeIndex = 0 ) || start.pop() ) ) { - - if ( ( ofType ? - node.nodeName.toLowerCase() === name : - node.nodeType === 1 ) && - ++diff ) { - - // Cache the index of each encountered element - if ( useCache ) { - outerCache = node[ expando ] || - ( node[ expando ] = {} ); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ node.uniqueID ] || - ( outerCache[ node.uniqueID ] = {} ); - - uniqueCache[ type ] = [ dirruns, diff ]; - } - - if ( node === elem ) { - break; - } - } - } - } - } - - // Incorporate the offset, then check against cycle size - diff -= last; - return diff === first || ( diff % first === 0 && diff / first >= 0 ); - } - }; - }, - - "PSEUDO": function( pseudo, argument ) { - - // pseudo-class names are case-insensitive - // http://www.w3.org/TR/selectors/#pseudo-classes - // Prioritize by case sensitivity in case custom pseudos are added with uppercase letters - // Remember that setFilters inherits from pseudos - var args, - fn = Expr.pseudos[ pseudo ] || Expr.setFilters[ pseudo.toLowerCase() ] || - Sizzle.error( "unsupported pseudo: " + pseudo ); - - // The user may use createPseudo to indicate that - // arguments are needed to create the filter function - // just as Sizzle does - if ( fn[ expando ] ) { - return fn( argument ); - } - - // But maintain support for old signatures - if ( fn.length > 1 ) { - args = [ pseudo, pseudo, "", argument ]; - return Expr.setFilters.hasOwnProperty( pseudo.toLowerCase() ) ? - markFunction( function( seed, matches ) { - var idx, - matched = fn( seed, argument ), - i = matched.length; - while ( i-- ) { - idx = indexOf( seed, matched[ i ] ); - seed[ idx ] = !( matches[ idx ] = matched[ i ] ); - } - } ) : - function( elem ) { - return fn( elem, 0, args ); - }; - } - - return fn; - } - }, - - pseudos: { - - // Potentially complex pseudos - "not": markFunction( function( selector ) { - - // Trim the selector passed to compile - // to avoid treating leading and trailing - // spaces as combinators - var input = [], - results = [], - matcher = compile( selector.replace( rtrim, "$1" ) ); - - return matcher[ expando ] ? - markFunction( function( seed, matches, _context, xml ) { - var elem, - unmatched = matcher( seed, null, xml, [] ), - i = seed.length; - - // Match elements unmatched by `matcher` - while ( i-- ) { - if ( ( elem = unmatched[ i ] ) ) { - seed[ i ] = !( matches[ i ] = elem ); - } - } - } ) : - function( elem, _context, xml ) { - input[ 0 ] = elem; - matcher( input, null, xml, results ); - - // Don't keep the element (issue #299) - input[ 0 ] = null; - return !results.pop(); - }; - } ), - - "has": markFunction( function( selector ) { - return function( elem ) { - return Sizzle( selector, elem ).length > 0; - }; - } ), - - "contains": markFunction( function( text ) { - text = text.replace( runescape, funescape ); - return function( elem ) { - return ( elem.textContent || getText( elem ) ).indexOf( text ) > -1; - }; - } ), - - // "Whether an element is represented by a :lang() selector - // is based solely on the element's language value - // being equal to the identifier C, - // or beginning with the identifier C immediately followed by "-". - // The matching of C against the element's language value is performed case-insensitively. - // The identifier C does not have to be a valid language name." - // http://www.w3.org/TR/selectors/#lang-pseudo - "lang": markFunction( function( lang ) { - - // lang value must be a valid identifier - if ( !ridentifier.test( lang || "" ) ) { - Sizzle.error( "unsupported lang: " + lang ); - } - lang = lang.replace( runescape, funescape ).toLowerCase(); - return function( elem ) { - var elemLang; - do { - if ( ( elemLang = documentIsHTML ? - elem.lang : - elem.getAttribute( "xml:lang" ) || elem.getAttribute( "lang" ) ) ) { - - elemLang = elemLang.toLowerCase(); - return elemLang === lang || elemLang.indexOf( lang + "-" ) === 0; - } - } while ( ( elem = elem.parentNode ) && elem.nodeType === 1 ); - return false; - }; - } ), - - // Miscellaneous - "target": function( elem ) { - var hash = window.location && window.location.hash; - return hash && hash.slice( 1 ) === elem.id; - }, - - "root": function( elem ) { - return elem === docElem; - }, - - "focus": function( elem ) { - return elem === document.activeElement && - ( !document.hasFocus || document.hasFocus() ) && - !!( elem.type || elem.href || ~elem.tabIndex ); - }, - - // Boolean properties - "enabled": createDisabledPseudo( false ), - "disabled": createDisabledPseudo( true ), - - "checked": function( elem ) { - - // In CSS3, :checked should return both checked and selected elements - // http://www.w3.org/TR/2011/REC-css3-selectors-20110929/#checked - var nodeName = elem.nodeName.toLowerCase(); - return ( nodeName === "input" && !!elem.checked ) || - ( nodeName === "option" && !!elem.selected ); - }, - - "selected": function( elem ) { - - // Accessing this property makes selected-by-default - // options in Safari work properly - if ( elem.parentNode ) { - // eslint-disable-next-line no-unused-expressions - elem.parentNode.selectedIndex; - } - - return elem.selected === true; - }, - - // Contents - "empty": function( elem ) { - - // http://www.w3.org/TR/selectors/#empty-pseudo - // :empty is negated by element (1) or content nodes (text: 3; cdata: 4; entity ref: 5), - // but not by others (comment: 8; processing instruction: 7; etc.) - // nodeType < 6 works because attributes (2) do not appear as children - for ( elem = elem.firstChild; elem; elem = elem.nextSibling ) { - if ( elem.nodeType < 6 ) { - return false; - } - } - return true; - }, - - "parent": function( elem ) { - return !Expr.pseudos[ "empty" ]( elem ); - }, - - // Element/input types - "header": function( elem ) { - return rheader.test( elem.nodeName ); - }, - - "input": function( elem ) { - return rinputs.test( elem.nodeName ); - }, - - "button": function( elem ) { - var name = elem.nodeName.toLowerCase(); - return name === "input" && elem.type === "button" || name === "button"; - }, - - "text": function( elem ) { - var attr; - return elem.nodeName.toLowerCase() === "input" && - elem.type === "text" && - - // Support: IE<8 - // New HTML5 attribute values (e.g., "search") appear with elem.type === "text" - ( ( attr = elem.getAttribute( "type" ) ) == null || - attr.toLowerCase() === "text" ); - }, - - // Position-in-collection - "first": createPositionalPseudo( function() { - return [ 0 ]; - } ), - - "last": createPositionalPseudo( function( _matchIndexes, length ) { - return [ length - 1 ]; - } ), - - "eq": createPositionalPseudo( function( _matchIndexes, length, argument ) { - return [ argument < 0 ? argument + length : argument ]; - } ), - - "even": createPositionalPseudo( function( matchIndexes, length ) { - var i = 0; - for ( ; i < length; i += 2 ) { - matchIndexes.push( i ); - } - return matchIndexes; - } ), - - "odd": createPositionalPseudo( function( matchIndexes, length ) { - var i = 1; - for ( ; i < length; i += 2 ) { - matchIndexes.push( i ); - } - return matchIndexes; - } ), - - "lt": createPositionalPseudo( function( matchIndexes, length, argument ) { - var i = argument < 0 ? - argument + length : - argument > length ? - length : - argument; - for ( ; --i >= 0; ) { - matchIndexes.push( i ); - } - return matchIndexes; - } ), - - "gt": createPositionalPseudo( function( matchIndexes, length, argument ) { - var i = argument < 0 ? argument + length : argument; - for ( ; ++i < length; ) { - matchIndexes.push( i ); - } - return matchIndexes; - } ) - } -}; - -Expr.pseudos[ "nth" ] = Expr.pseudos[ "eq" ]; - -// Add button/input type pseudos -for ( i in { radio: true, checkbox: true, file: true, password: true, image: true } ) { - Expr.pseudos[ i ] = createInputPseudo( i ); -} -for ( i in { submit: true, reset: true } ) { - Expr.pseudos[ i ] = createButtonPseudo( i ); -} - -// Easy API for creating new setFilters -function setFilters() {} -setFilters.prototype = Expr.filters = Expr.pseudos; -Expr.setFilters = new setFilters(); - -tokenize = Sizzle.tokenize = function( selector, parseOnly ) { - var matched, match, tokens, type, - soFar, groups, preFilters, - cached = tokenCache[ selector + " " ]; - - if ( cached ) { - return parseOnly ? 0 : cached.slice( 0 ); - } - - soFar = selector; - groups = []; - preFilters = Expr.preFilter; - - while ( soFar ) { - - // Comma and first run - if ( !matched || ( match = rcomma.exec( soFar ) ) ) { - if ( match ) { - - // Don't consume trailing commas as valid - soFar = soFar.slice( match[ 0 ].length ) || soFar; - } - groups.push( ( tokens = [] ) ); - } - - matched = false; - - // Combinators - if ( ( match = rcombinators.exec( soFar ) ) ) { - matched = match.shift(); - tokens.push( { - value: matched, - - // Cast descendant combinators to space - type: match[ 0 ].replace( rtrim, " " ) - } ); - soFar = soFar.slice( matched.length ); - } - - // Filters - for ( type in Expr.filter ) { - if ( ( match = matchExpr[ type ].exec( soFar ) ) && ( !preFilters[ type ] || - ( match = preFilters[ type ]( match ) ) ) ) { - matched = match.shift(); - tokens.push( { - value: matched, - type: type, - matches: match - } ); - soFar = soFar.slice( matched.length ); - } - } - - if ( !matched ) { - break; - } - } - - // Return the length of the invalid excess - // if we're just parsing - // Otherwise, throw an error or return tokens - return parseOnly ? - soFar.length : - soFar ? - Sizzle.error( selector ) : - - // Cache the tokens - tokenCache( selector, groups ).slice( 0 ); -}; - -function toSelector( tokens ) { - var i = 0, - len = tokens.length, - selector = ""; - for ( ; i < len; i++ ) { - selector += tokens[ i ].value; - } - return selector; -} - -function addCombinator( matcher, combinator, base ) { - var dir = combinator.dir, - skip = combinator.next, - key = skip || dir, - checkNonElements = base && key === "parentNode", - doneName = done++; - - return combinator.first ? - - // Check against closest ancestor/preceding element - function( elem, context, xml ) { - while ( ( elem = elem[ dir ] ) ) { - if ( elem.nodeType === 1 || checkNonElements ) { - return matcher( elem, context, xml ); - } - } - return false; - } : - - // Check against all ancestor/preceding elements - function( elem, context, xml ) { - var oldCache, uniqueCache, outerCache, - newCache = [ dirruns, doneName ]; - - // We can't set arbitrary data on XML nodes, so they don't benefit from combinator caching - if ( xml ) { - while ( ( elem = elem[ dir ] ) ) { - if ( elem.nodeType === 1 || checkNonElements ) { - if ( matcher( elem, context, xml ) ) { - return true; - } - } - } - } else { - while ( ( elem = elem[ dir ] ) ) { - if ( elem.nodeType === 1 || checkNonElements ) { - outerCache = elem[ expando ] || ( elem[ expando ] = {} ); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ elem.uniqueID ] || - ( outerCache[ elem.uniqueID ] = {} ); - - if ( skip && skip === elem.nodeName.toLowerCase() ) { - elem = elem[ dir ] || elem; - } else if ( ( oldCache = uniqueCache[ key ] ) && - oldCache[ 0 ] === dirruns && oldCache[ 1 ] === doneName ) { - - // Assign to newCache so results back-propagate to previous elements - return ( newCache[ 2 ] = oldCache[ 2 ] ); - } else { - - // Reuse newcache so results back-propagate to previous elements - uniqueCache[ key ] = newCache; - - // A match means we're done; a fail means we have to keep checking - if ( ( newCache[ 2 ] = matcher( elem, context, xml ) ) ) { - return true; - } - } - } - } - } - return false; - }; -} - -function elementMatcher( matchers ) { - return matchers.length > 1 ? - function( elem, context, xml ) { - var i = matchers.length; - while ( i-- ) { - if ( !matchers[ i ]( elem, context, xml ) ) { - return false; - } - } - return true; - } : - matchers[ 0 ]; -} - -function multipleContexts( selector, contexts, results ) { - var i = 0, - len = contexts.length; - for ( ; i < len; i++ ) { - Sizzle( selector, contexts[ i ], results ); - } - return results; -} - -function condense( unmatched, map, filter, context, xml ) { - var elem, - newUnmatched = [], - i = 0, - len = unmatched.length, - mapped = map != null; - - for ( ; i < len; i++ ) { - if ( ( elem = unmatched[ i ] ) ) { - if ( !filter || filter( elem, context, xml ) ) { - newUnmatched.push( elem ); - if ( mapped ) { - map.push( i ); - } - } - } - } - - return newUnmatched; -} - -function setMatcher( preFilter, selector, matcher, postFilter, postFinder, postSelector ) { - if ( postFilter && !postFilter[ expando ] ) { - postFilter = setMatcher( postFilter ); - } - if ( postFinder && !postFinder[ expando ] ) { - postFinder = setMatcher( postFinder, postSelector ); - } - return markFunction( function( seed, results, context, xml ) { - var temp, i, elem, - preMap = [], - postMap = [], - preexisting = results.length, - - // Get initial elements from seed or context - elems = seed || multipleContexts( - selector || "*", - context.nodeType ? [ context ] : context, - [] - ), - - // Prefilter to get matcher input, preserving a map for seed-results synchronization - matcherIn = preFilter && ( seed || !selector ) ? - condense( elems, preMap, preFilter, context, xml ) : - elems, - - matcherOut = matcher ? - - // If we have a postFinder, or filtered seed, or non-seed postFilter or preexisting results, - postFinder || ( seed ? preFilter : preexisting || postFilter ) ? - - // ...intermediate processing is necessary - [] : - - // ...otherwise use results directly - results : - matcherIn; - - // Find primary matches - if ( matcher ) { - matcher( matcherIn, matcherOut, context, xml ); - } - - // Apply postFilter - if ( postFilter ) { - temp = condense( matcherOut, postMap ); - postFilter( temp, [], context, xml ); - - // Un-match failing elements by moving them back to matcherIn - i = temp.length; - while ( i-- ) { - if ( ( elem = temp[ i ] ) ) { - matcherOut[ postMap[ i ] ] = !( matcherIn[ postMap[ i ] ] = elem ); - } - } - } - - if ( seed ) { - if ( postFinder || preFilter ) { - if ( postFinder ) { - - // Get the final matcherOut by condensing this intermediate into postFinder contexts - temp = []; - i = matcherOut.length; - while ( i-- ) { - if ( ( elem = matcherOut[ i ] ) ) { - - // Restore matcherIn since elem is not yet a final match - temp.push( ( matcherIn[ i ] = elem ) ); - } - } - postFinder( null, ( matcherOut = [] ), temp, xml ); - } - - // Move matched elements from seed to results to keep them synchronized - i = matcherOut.length; - while ( i-- ) { - if ( ( elem = matcherOut[ i ] ) && - ( temp = postFinder ? indexOf( seed, elem ) : preMap[ i ] ) > -1 ) { - - seed[ temp ] = !( results[ temp ] = elem ); - } - } - } - - // Add elements to results, through postFinder if defined - } else { - matcherOut = condense( - matcherOut === results ? - matcherOut.splice( preexisting, matcherOut.length ) : - matcherOut - ); - if ( postFinder ) { - postFinder( null, results, matcherOut, xml ); - } else { - push.apply( results, matcherOut ); - } - } - } ); -} - -function matcherFromTokens( tokens ) { - var checkContext, matcher, j, - len = tokens.length, - leadingRelative = Expr.relative[ tokens[ 0 ].type ], - implicitRelative = leadingRelative || Expr.relative[ " " ], - i = leadingRelative ? 1 : 0, - - // The foundational matcher ensures that elements are reachable from top-level context(s) - matchContext = addCombinator( function( elem ) { - return elem === checkContext; - }, implicitRelative, true ), - matchAnyContext = addCombinator( function( elem ) { - return indexOf( checkContext, elem ) > -1; - }, implicitRelative, true ), - matchers = [ function( elem, context, xml ) { - var ret = ( !leadingRelative && ( xml || context !== outermostContext ) ) || ( - ( checkContext = context ).nodeType ? - matchContext( elem, context, xml ) : - matchAnyContext( elem, context, xml ) ); - - // Avoid hanging onto element (issue #299) - checkContext = null; - return ret; - } ]; - - for ( ; i < len; i++ ) { - if ( ( matcher = Expr.relative[ tokens[ i ].type ] ) ) { - matchers = [ addCombinator( elementMatcher( matchers ), matcher ) ]; - } else { - matcher = Expr.filter[ tokens[ i ].type ].apply( null, tokens[ i ].matches ); - - // Return special upon seeing a positional matcher - if ( matcher[ expando ] ) { - - // Find the next relative operator (if any) for proper handling - j = ++i; - for ( ; j < len; j++ ) { - if ( Expr.relative[ tokens[ j ].type ] ) { - break; - } - } - return setMatcher( - i > 1 && elementMatcher( matchers ), - i > 1 && toSelector( - - // If the preceding token was a descendant combinator, insert an implicit any-element `*` - tokens - .slice( 0, i - 1 ) - .concat( { value: tokens[ i - 2 ].type === " " ? "*" : "" } ) - ).replace( rtrim, "$1" ), - matcher, - i < j && matcherFromTokens( tokens.slice( i, j ) ), - j < len && matcherFromTokens( ( tokens = tokens.slice( j ) ) ), - j < len && toSelector( tokens ) - ); - } - matchers.push( matcher ); - } - } - - return elementMatcher( matchers ); -} - -function matcherFromGroupMatchers( elementMatchers, setMatchers ) { - var bySet = setMatchers.length > 0, - byElement = elementMatchers.length > 0, - superMatcher = function( seed, context, xml, results, outermost ) { - var elem, j, matcher, - matchedCount = 0, - i = "0", - unmatched = seed && [], - setMatched = [], - contextBackup = outermostContext, - - // We must always have either seed elements or outermost context - elems = seed || byElement && Expr.find[ "TAG" ]( "*", outermost ), - - // Use integer dirruns iff this is the outermost matcher - dirrunsUnique = ( dirruns += contextBackup == null ? 1 : Math.random() || 0.1 ), - len = elems.length; - - if ( outermost ) { - - // Support: IE 11+, Edge 17 - 18+ - // IE/Edge sometimes throw a "Permission denied" error when strict-comparing - // two documents; shallow comparisons work. - // eslint-disable-next-line eqeqeq - outermostContext = context == document || context || outermost; - } - - // Add elements passing elementMatchers directly to results - // Support: IE<9, Safari - // Tolerate NodeList properties (IE: "length"; Safari: ) matching elements by id - for ( ; i !== len && ( elem = elems[ i ] ) != null; i++ ) { - if ( byElement && elem ) { - j = 0; - - // Support: IE 11+, Edge 17 - 18+ - // IE/Edge sometimes throw a "Permission denied" error when strict-comparing - // two documents; shallow comparisons work. - // eslint-disable-next-line eqeqeq - if ( !context && elem.ownerDocument != document ) { - setDocument( elem ); - xml = !documentIsHTML; - } - while ( ( matcher = elementMatchers[ j++ ] ) ) { - if ( matcher( elem, context || document, xml ) ) { - results.push( elem ); - break; - } - } - if ( outermost ) { - dirruns = dirrunsUnique; - } - } - - // Track unmatched elements for set filters - if ( bySet ) { - - // They will have gone through all possible matchers - if ( ( elem = !matcher && elem ) ) { - matchedCount--; - } - - // Lengthen the array for every element, matched or not - if ( seed ) { - unmatched.push( elem ); - } - } - } - - // `i` is now the count of elements visited above, and adding it to `matchedCount` - // makes the latter nonnegative. - matchedCount += i; - - // Apply set filters to unmatched elements - // NOTE: This can be skipped if there are no unmatched elements (i.e., `matchedCount` - // equals `i`), unless we didn't visit _any_ elements in the above loop because we have - // no element matchers and no seed. - // Incrementing an initially-string "0" `i` allows `i` to remain a string only in that - // case, which will result in a "00" `matchedCount` that differs from `i` but is also - // numerically zero. - if ( bySet && i !== matchedCount ) { - j = 0; - while ( ( matcher = setMatchers[ j++ ] ) ) { - matcher( unmatched, setMatched, context, xml ); - } - - if ( seed ) { - - // Reintegrate element matches to eliminate the need for sorting - if ( matchedCount > 0 ) { - while ( i-- ) { - if ( !( unmatched[ i ] || setMatched[ i ] ) ) { - setMatched[ i ] = pop.call( results ); - } - } - } - - // Discard index placeholder values to get only actual matches - setMatched = condense( setMatched ); - } - - // Add matches to results - push.apply( results, setMatched ); - - // Seedless set matches succeeding multiple successful matchers stipulate sorting - if ( outermost && !seed && setMatched.length > 0 && - ( matchedCount + setMatchers.length ) > 1 ) { - - Sizzle.uniqueSort( results ); - } - } - - // Override manipulation of globals by nested matchers - if ( outermost ) { - dirruns = dirrunsUnique; - outermostContext = contextBackup; - } - - return unmatched; - }; - - return bySet ? - markFunction( superMatcher ) : - superMatcher; -} - -compile = Sizzle.compile = function( selector, match /* Internal Use Only */ ) { - var i, - setMatchers = [], - elementMatchers = [], - cached = compilerCache[ selector + " " ]; - - if ( !cached ) { - - // Generate a function of recursive functions that can be used to check each element - if ( !match ) { - match = tokenize( selector ); - } - i = match.length; - while ( i-- ) { - cached = matcherFromTokens( match[ i ] ); - if ( cached[ expando ] ) { - setMatchers.push( cached ); - } else { - elementMatchers.push( cached ); - } - } - - // Cache the compiled function - cached = compilerCache( - selector, - matcherFromGroupMatchers( elementMatchers, setMatchers ) - ); - - // Save selector and tokenization - cached.selector = selector; - } - return cached; -}; - -/** - * A low-level selection function that works with Sizzle's compiled - * selector functions - * @param {String|Function} selector A selector or a pre-compiled - * selector function built with Sizzle.compile - * @param {Element} context - * @param {Array} [results] - * @param {Array} [seed] A set of elements to match against - */ -select = Sizzle.select = function( selector, context, results, seed ) { - var i, tokens, token, type, find, - compiled = typeof selector === "function" && selector, - match = !seed && tokenize( ( selector = compiled.selector || selector ) ); - - results = results || []; - - // Try to minimize operations if there is only one selector in the list and no seed - // (the latter of which guarantees us context) - if ( match.length === 1 ) { - - // Reduce context if the leading compound selector is an ID - tokens = match[ 0 ] = match[ 0 ].slice( 0 ); - if ( tokens.length > 2 && ( token = tokens[ 0 ] ).type === "ID" && - context.nodeType === 9 && documentIsHTML && Expr.relative[ tokens[ 1 ].type ] ) { - - context = ( Expr.find[ "ID" ]( token.matches[ 0 ] - .replace( runescape, funescape ), context ) || [] )[ 0 ]; - if ( !context ) { - return results; - - // Precompiled matchers will still verify ancestry, so step up a level - } else if ( compiled ) { - context = context.parentNode; - } - - selector = selector.slice( tokens.shift().value.length ); - } - - // Fetch a seed set for right-to-left matching - i = matchExpr[ "needsContext" ].test( selector ) ? 0 : tokens.length; - while ( i-- ) { - token = tokens[ i ]; - - // Abort if we hit a combinator - if ( Expr.relative[ ( type = token.type ) ] ) { - break; - } - if ( ( find = Expr.find[ type ] ) ) { - - // Search, expanding context for leading sibling combinators - if ( ( seed = find( - token.matches[ 0 ].replace( runescape, funescape ), - rsibling.test( tokens[ 0 ].type ) && testContext( context.parentNode ) || - context - ) ) ) { - - // If seed is empty or no tokens remain, we can return early - tokens.splice( i, 1 ); - selector = seed.length && toSelector( tokens ); - if ( !selector ) { - push.apply( results, seed ); - return results; - } - - break; - } - } - } - } - - // Compile and execute a filtering function if one is not provided - // Provide `match` to avoid retokenization if we modified the selector above - ( compiled || compile( selector, match ) )( - seed, - context, - !documentIsHTML, - results, - !context || rsibling.test( selector ) && testContext( context.parentNode ) || context - ); - return results; -}; - -// One-time assignments - -// Sort stability -support.sortStable = expando.split( "" ).sort( sortOrder ).join( "" ) === expando; - -// Support: Chrome 14-35+ -// Always assume duplicates if they aren't passed to the comparison function -support.detectDuplicates = !!hasDuplicate; - -// Initialize against the default document -setDocument(); - -// Support: Webkit<537.32 - Safari 6.0.3/Chrome 25 (fixed in Chrome 27) -// Detached nodes confoundingly follow *each other* -support.sortDetached = assert( function( el ) { - - // Should return 1, but returns 4 (following) - return el.compareDocumentPosition( document.createElement( "fieldset" ) ) & 1; -} ); - -// Support: IE<8 -// Prevent attribute/property "interpolation" -// https://msdn.microsoft.com/en-us/library/ms536429%28VS.85%29.aspx -if ( !assert( function( el ) { - el.innerHTML = ""; - return el.firstChild.getAttribute( "href" ) === "#"; -} ) ) { - addHandle( "type|href|height|width", function( elem, name, isXML ) { - if ( !isXML ) { - return elem.getAttribute( name, name.toLowerCase() === "type" ? 1 : 2 ); - } - } ); -} - -// Support: IE<9 -// Use defaultValue in place of getAttribute("value") -if ( !support.attributes || !assert( function( el ) { - el.innerHTML = ""; - el.firstChild.setAttribute( "value", "" ); - return el.firstChild.getAttribute( "value" ) === ""; -} ) ) { - addHandle( "value", function( elem, _name, isXML ) { - if ( !isXML && elem.nodeName.toLowerCase() === "input" ) { - return elem.defaultValue; - } - } ); -} - -// Support: IE<9 -// Use getAttributeNode to fetch booleans when getAttribute lies -if ( !assert( function( el ) { - return el.getAttribute( "disabled" ) == null; -} ) ) { - addHandle( booleans, function( elem, name, isXML ) { - var val; - if ( !isXML ) { - return elem[ name ] === true ? name.toLowerCase() : - ( val = elem.getAttributeNode( name ) ) && val.specified ? - val.value : - null; - } - } ); -} - -return Sizzle; - -} )( window ); - - - -jQuery.find = Sizzle; -jQuery.expr = Sizzle.selectors; - -// Deprecated -jQuery.expr[ ":" ] = jQuery.expr.pseudos; -jQuery.uniqueSort = jQuery.unique = Sizzle.uniqueSort; -jQuery.text = Sizzle.getText; -jQuery.isXMLDoc = Sizzle.isXML; -jQuery.contains = Sizzle.contains; -jQuery.escapeSelector = Sizzle.escape; - - - - -var dir = function( elem, dir, until ) { - var matched = [], - truncate = until !== undefined; - - while ( ( elem = elem[ dir ] ) && elem.nodeType !== 9 ) { - if ( elem.nodeType === 1 ) { - if ( truncate && jQuery( elem ).is( until ) ) { - break; - } - matched.push( elem ); - } - } - return matched; -}; - - -var siblings = function( n, elem ) { - var matched = []; - - for ( ; n; n = n.nextSibling ) { - if ( n.nodeType === 1 && n !== elem ) { - matched.push( n ); - } - } - - return matched; -}; - - -var rneedsContext = jQuery.expr.match.needsContext; - - - -function nodeName( elem, name ) { - - return elem.nodeName && elem.nodeName.toLowerCase() === name.toLowerCase(); - -}; -var rsingleTag = ( /^<([a-z][^\/\0>:\x20\t\r\n\f]*)[\x20\t\r\n\f]*\/?>(?:<\/\1>|)$/i ); - - - -// Implement the identical functionality for filter and not -function winnow( elements, qualifier, not ) { - if ( isFunction( qualifier ) ) { - return jQuery.grep( elements, function( elem, i ) { - return !!qualifier.call( elem, i, elem ) !== not; - } ); - } - - // Single element - if ( qualifier.nodeType ) { - return jQuery.grep( elements, function( elem ) { - return ( elem === qualifier ) !== not; - } ); - } - - // Arraylike of elements (jQuery, arguments, Array) - if ( typeof qualifier !== "string" ) { - return jQuery.grep( elements, function( elem ) { - return ( indexOf.call( qualifier, elem ) > -1 ) !== not; - } ); - } - - // Filtered directly for both simple and complex selectors - return jQuery.filter( qualifier, elements, not ); -} - -jQuery.filter = function( expr, elems, not ) { - var elem = elems[ 0 ]; - - if ( not ) { - expr = ":not(" + expr + ")"; - } - - if ( elems.length === 1 && elem.nodeType === 1 ) { - return jQuery.find.matchesSelector( elem, expr ) ? [ elem ] : []; - } - - return jQuery.find.matches( expr, jQuery.grep( elems, function( elem ) { - return elem.nodeType === 1; - } ) ); -}; - -jQuery.fn.extend( { - find: function( selector ) { - var i, ret, - len = this.length, - self = this; - - if ( typeof selector !== "string" ) { - return this.pushStack( jQuery( selector ).filter( function() { - for ( i = 0; i < len; i++ ) { - if ( jQuery.contains( self[ i ], this ) ) { - return true; - } - } - } ) ); - } - - ret = this.pushStack( [] ); - - for ( i = 0; i < len; i++ ) { - jQuery.find( selector, self[ i ], ret ); - } - - return len > 1 ? jQuery.uniqueSort( ret ) : ret; - }, - filter: function( selector ) { - return this.pushStack( winnow( this, selector || [], false ) ); - }, - not: function( selector ) { - return this.pushStack( winnow( this, selector || [], true ) ); - }, - is: function( selector ) { - return !!winnow( - this, - - // If this is a positional/relative selector, check membership in the returned set - // so $("p:first").is("p:last") won't return true for a doc with two "p". - typeof selector === "string" && rneedsContext.test( selector ) ? - jQuery( selector ) : - selector || [], - false - ).length; - } -} ); - - -// Initialize a jQuery object - - -// A central reference to the root jQuery(document) -var rootjQuery, - - // A simple way to check for HTML strings - // Prioritize #id over to avoid XSS via location.hash (#9521) - // Strict HTML recognition (#11290: must start with <) - // Shortcut simple #id case for speed - rquickExpr = /^(?:\s*(<[\w\W]+>)[^>]*|#([\w-]+))$/, - - init = jQuery.fn.init = function( selector, context, root ) { - var match, elem; - - // HANDLE: $(""), $(null), $(undefined), $(false) - if ( !selector ) { - return this; - } - - // Method init() accepts an alternate rootjQuery - // so migrate can support jQuery.sub (gh-2101) - root = root || rootjQuery; - - // Handle HTML strings - if ( typeof selector === "string" ) { - if ( selector[ 0 ] === "<" && - selector[ selector.length - 1 ] === ">" && - selector.length >= 3 ) { - - // Assume that strings that start and end with <> are HTML and skip the regex check - match = [ null, selector, null ]; - - } else { - match = rquickExpr.exec( selector ); - } - - // Match html or make sure no context is specified for #id - if ( match && ( match[ 1 ] || !context ) ) { - - // HANDLE: $(html) -> $(array) - if ( match[ 1 ] ) { - context = context instanceof jQuery ? context[ 0 ] : context; - - // Option to run scripts is true for back-compat - // Intentionally let the error be thrown if parseHTML is not present - jQuery.merge( this, jQuery.parseHTML( - match[ 1 ], - context && context.nodeType ? context.ownerDocument || context : document, - true - ) ); - - // HANDLE: $(html, props) - if ( rsingleTag.test( match[ 1 ] ) && jQuery.isPlainObject( context ) ) { - for ( match in context ) { - - // Properties of context are called as methods if possible - if ( isFunction( this[ match ] ) ) { - this[ match ]( context[ match ] ); - - // ...and otherwise set as attributes - } else { - this.attr( match, context[ match ] ); - } - } - } - - return this; - - // HANDLE: $(#id) - } else { - elem = document.getElementById( match[ 2 ] ); - - if ( elem ) { - - // Inject the element directly into the jQuery object - this[ 0 ] = elem; - this.length = 1; - } - return this; - } - - // HANDLE: $(expr, $(...)) - } else if ( !context || context.jquery ) { - return ( context || root ).find( selector ); - - // HANDLE: $(expr, context) - // (which is just equivalent to: $(context).find(expr) - } else { - return this.constructor( context ).find( selector ); - } - - // HANDLE: $(DOMElement) - } else if ( selector.nodeType ) { - this[ 0 ] = selector; - this.length = 1; - return this; - - // HANDLE: $(function) - // Shortcut for document ready - } else if ( isFunction( selector ) ) { - return root.ready !== undefined ? - root.ready( selector ) : - - // Execute immediately if ready is not present - selector( jQuery ); - } - - return jQuery.makeArray( selector, this ); - }; - -// Give the init function the jQuery prototype for later instantiation -init.prototype = jQuery.fn; - -// Initialize central reference -rootjQuery = jQuery( document ); - - -var rparentsprev = /^(?:parents|prev(?:Until|All))/, - - // Methods guaranteed to produce a unique set when starting from a unique set - guaranteedUnique = { - children: true, - contents: true, - next: true, - prev: true - }; - -jQuery.fn.extend( { - has: function( target ) { - var targets = jQuery( target, this ), - l = targets.length; - - return this.filter( function() { - var i = 0; - for ( ; i < l; i++ ) { - if ( jQuery.contains( this, targets[ i ] ) ) { - return true; - } - } - } ); - }, - - closest: function( selectors, context ) { - var cur, - i = 0, - l = this.length, - matched = [], - targets = typeof selectors !== "string" && jQuery( selectors ); - - // Positional selectors never match, since there's no _selection_ context - if ( !rneedsContext.test( selectors ) ) { - for ( ; i < l; i++ ) { - for ( cur = this[ i ]; cur && cur !== context; cur = cur.parentNode ) { - - // Always skip document fragments - if ( cur.nodeType < 11 && ( targets ? - targets.index( cur ) > -1 : - - // Don't pass non-elements to Sizzle - cur.nodeType === 1 && - jQuery.find.matchesSelector( cur, selectors ) ) ) { - - matched.push( cur ); - break; - } - } - } - } - - return this.pushStack( matched.length > 1 ? jQuery.uniqueSort( matched ) : matched ); - }, - - // Determine the position of an element within the set - index: function( elem ) { - - // No argument, return index in parent - if ( !elem ) { - return ( this[ 0 ] && this[ 0 ].parentNode ) ? this.first().prevAll().length : -1; - } - - // Index in selector - if ( typeof elem === "string" ) { - return indexOf.call( jQuery( elem ), this[ 0 ] ); - } - - // Locate the position of the desired element - return indexOf.call( this, - - // If it receives a jQuery object, the first element is used - elem.jquery ? elem[ 0 ] : elem - ); - }, - - add: function( selector, context ) { - return this.pushStack( - jQuery.uniqueSort( - jQuery.merge( this.get(), jQuery( selector, context ) ) - ) - ); - }, - - addBack: function( selector ) { - return this.add( selector == null ? - this.prevObject : this.prevObject.filter( selector ) - ); - } -} ); - -function sibling( cur, dir ) { - while ( ( cur = cur[ dir ] ) && cur.nodeType !== 1 ) {} - return cur; -} - -jQuery.each( { - parent: function( elem ) { - var parent = elem.parentNode; - return parent && parent.nodeType !== 11 ? parent : null; - }, - parents: function( elem ) { - return dir( elem, "parentNode" ); - }, - parentsUntil: function( elem, _i, until ) { - return dir( elem, "parentNode", until ); - }, - next: function( elem ) { - return sibling( elem, "nextSibling" ); - }, - prev: function( elem ) { - return sibling( elem, "previousSibling" ); - }, - nextAll: function( elem ) { - return dir( elem, "nextSibling" ); - }, - prevAll: function( elem ) { - return dir( elem, "previousSibling" ); - }, - nextUntil: function( elem, _i, until ) { - return dir( elem, "nextSibling", until ); - }, - prevUntil: function( elem, _i, until ) { - return dir( elem, "previousSibling", until ); - }, - siblings: function( elem ) { - return siblings( ( elem.parentNode || {} ).firstChild, elem ); - }, - children: function( elem ) { - return siblings( elem.firstChild ); - }, - contents: function( elem ) { - if ( elem.contentDocument != null && - - // Support: IE 11+ - // elements with no `data` attribute has an object - // `contentDocument` with a `null` prototype. - getProto( elem.contentDocument ) ) { - - return elem.contentDocument; - } - - // Support: IE 9 - 11 only, iOS 7 only, Android Browser <=4.3 only - // Treat the template element as a regular one in browsers that - // don't support it. - if ( nodeName( elem, "template" ) ) { - elem = elem.content || elem; - } - - return jQuery.merge( [], elem.childNodes ); - } -}, function( name, fn ) { - jQuery.fn[ name ] = function( until, selector ) { - var matched = jQuery.map( this, fn, until ); - - if ( name.slice( -5 ) !== "Until" ) { - selector = until; - } - - if ( selector && typeof selector === "string" ) { - matched = jQuery.filter( selector, matched ); - } - - if ( this.length > 1 ) { - - // Remove duplicates - if ( !guaranteedUnique[ name ] ) { - jQuery.uniqueSort( matched ); - } - - // Reverse order for parents* and prev-derivatives - if ( rparentsprev.test( name ) ) { - matched.reverse(); - } - } - - return this.pushStack( matched ); - }; -} ); -var rnothtmlwhite = ( /[^\x20\t\r\n\f]+/g ); - - - -// Convert String-formatted options into Object-formatted ones -function createOptions( options ) { - var object = {}; - jQuery.each( options.match( rnothtmlwhite ) || [], function( _, flag ) { - object[ flag ] = true; - } ); - return object; -} - -/* - * Create a callback list using the following parameters: - * - * options: an optional list of space-separated options that will change how - * the callback list behaves or a more traditional option object - * - * By default a callback list will act like an event callback list and can be - * "fired" multiple times. - * - * Possible options: - * - * once: will ensure the callback list can only be fired once (like a Deferred) - * - * memory: will keep track of previous values and will call any callback added - * after the list has been fired right away with the latest "memorized" - * values (like a Deferred) - * - * unique: will ensure a callback can only be added once (no duplicate in the list) - * - * stopOnFalse: interrupt callings when a callback returns false - * - */ -jQuery.Callbacks = function( options ) { - - // Convert options from String-formatted to Object-formatted if needed - // (we check in cache first) - options = typeof options === "string" ? - createOptions( options ) : - jQuery.extend( {}, options ); - - var // Flag to know if list is currently firing - firing, - - // Last fire value for non-forgettable lists - memory, - - // Flag to know if list was already fired - fired, - - // Flag to prevent firing - locked, - - // Actual callback list - list = [], - - // Queue of execution data for repeatable lists - queue = [], - - // Index of currently firing callback (modified by add/remove as needed) - firingIndex = -1, - - // Fire callbacks - fire = function() { - - // Enforce single-firing - locked = locked || options.once; - - // Execute callbacks for all pending executions, - // respecting firingIndex overrides and runtime changes - fired = firing = true; - for ( ; queue.length; firingIndex = -1 ) { - memory = queue.shift(); - while ( ++firingIndex < list.length ) { - - // Run callback and check for early termination - if ( list[ firingIndex ].apply( memory[ 0 ], memory[ 1 ] ) === false && - options.stopOnFalse ) { - - // Jump to end and forget the data so .add doesn't re-fire - firingIndex = list.length; - memory = false; - } - } - } - - // Forget the data if we're done with it - if ( !options.memory ) { - memory = false; - } - - firing = false; - - // Clean up if we're done firing for good - if ( locked ) { - - // Keep an empty list if we have data for future add calls - if ( memory ) { - list = []; - - // Otherwise, this object is spent - } else { - list = ""; - } - } - }, - - // Actual Callbacks object - self = { - - // Add a callback or a collection of callbacks to the list - add: function() { - if ( list ) { - - // If we have memory from a past run, we should fire after adding - if ( memory && !firing ) { - firingIndex = list.length - 1; - queue.push( memory ); - } - - ( function add( args ) { - jQuery.each( args, function( _, arg ) { - if ( isFunction( arg ) ) { - if ( !options.unique || !self.has( arg ) ) { - list.push( arg ); - } - } else if ( arg && arg.length && toType( arg ) !== "string" ) { - - // Inspect recursively - add( arg ); - } - } ); - } )( arguments ); - - if ( memory && !firing ) { - fire(); - } - } - return this; - }, - - // Remove a callback from the list - remove: function() { - jQuery.each( arguments, function( _, arg ) { - var index; - while ( ( index = jQuery.inArray( arg, list, index ) ) > -1 ) { - list.splice( index, 1 ); - - // Handle firing indexes - if ( index <= firingIndex ) { - firingIndex--; - } - } - } ); - return this; - }, - - // Check if a given callback is in the list. - // If no argument is given, return whether or not list has callbacks attached. - has: function( fn ) { - return fn ? - jQuery.inArray( fn, list ) > -1 : - list.length > 0; - }, - - // Remove all callbacks from the list - empty: function() { - if ( list ) { - list = []; - } - return this; - }, - - // Disable .fire and .add - // Abort any current/pending executions - // Clear all callbacks and values - disable: function() { - locked = queue = []; - list = memory = ""; - return this; - }, - disabled: function() { - return !list; - }, - - // Disable .fire - // Also disable .add unless we have memory (since it would have no effect) - // Abort any pending executions - lock: function() { - locked = queue = []; - if ( !memory && !firing ) { - list = memory = ""; - } - return this; - }, - locked: function() { - return !!locked; - }, - - // Call all callbacks with the given context and arguments - fireWith: function( context, args ) { - if ( !locked ) { - args = args || []; - args = [ context, args.slice ? args.slice() : args ]; - queue.push( args ); - if ( !firing ) { - fire(); - } - } - return this; - }, - - // Call all the callbacks with the given arguments - fire: function() { - self.fireWith( this, arguments ); - return this; - }, - - // To know if the callbacks have already been called at least once - fired: function() { - return !!fired; - } - }; - - return self; -}; - - -function Identity( v ) { - return v; -} -function Thrower( ex ) { - throw ex; -} - -function adoptValue( value, resolve, reject, noValue ) { - var method; - - try { - - // Check for promise aspect first to privilege synchronous behavior - if ( value && isFunction( ( method = value.promise ) ) ) { - method.call( value ).done( resolve ).fail( reject ); - - // Other thenables - } else if ( value && isFunction( ( method = value.then ) ) ) { - method.call( value, resolve, reject ); - - // Other non-thenables - } else { - - // Control `resolve` arguments by letting Array#slice cast boolean `noValue` to integer: - // * false: [ value ].slice( 0 ) => resolve( value ) - // * true: [ value ].slice( 1 ) => resolve() - resolve.apply( undefined, [ value ].slice( noValue ) ); - } - - // For Promises/A+, convert exceptions into rejections - // Since jQuery.when doesn't unwrap thenables, we can skip the extra checks appearing in - // Deferred#then to conditionally suppress rejection. - } catch ( value ) { - - // Support: Android 4.0 only - // Strict mode functions invoked without .call/.apply get global-object context - reject.apply( undefined, [ value ] ); - } -} - -jQuery.extend( { - - Deferred: function( func ) { - var tuples = [ - - // action, add listener, callbacks, - // ... .then handlers, argument index, [final state] - [ "notify", "progress", jQuery.Callbacks( "memory" ), - jQuery.Callbacks( "memory" ), 2 ], - [ "resolve", "done", jQuery.Callbacks( "once memory" ), - jQuery.Callbacks( "once memory" ), 0, "resolved" ], - [ "reject", "fail", jQuery.Callbacks( "once memory" ), - jQuery.Callbacks( "once memory" ), 1, "rejected" ] - ], - state = "pending", - promise = { - state: function() { - return state; - }, - always: function() { - deferred.done( arguments ).fail( arguments ); - return this; - }, - "catch": function( fn ) { - return promise.then( null, fn ); - }, - - // Keep pipe for back-compat - pipe: function( /* fnDone, fnFail, fnProgress */ ) { - var fns = arguments; - - return jQuery.Deferred( function( newDefer ) { - jQuery.each( tuples, function( _i, tuple ) { - - // Map tuples (progress, done, fail) to arguments (done, fail, progress) - var fn = isFunction( fns[ tuple[ 4 ] ] ) && fns[ tuple[ 4 ] ]; - - // deferred.progress(function() { bind to newDefer or newDefer.notify }) - // deferred.done(function() { bind to newDefer or newDefer.resolve }) - // deferred.fail(function() { bind to newDefer or newDefer.reject }) - deferred[ tuple[ 1 ] ]( function() { - var returned = fn && fn.apply( this, arguments ); - if ( returned && isFunction( returned.promise ) ) { - returned.promise() - .progress( newDefer.notify ) - .done( newDefer.resolve ) - .fail( newDefer.reject ); - } else { - newDefer[ tuple[ 0 ] + "With" ]( - this, - fn ? [ returned ] : arguments - ); - } - } ); - } ); - fns = null; - } ).promise(); - }, - then: function( onFulfilled, onRejected, onProgress ) { - var maxDepth = 0; - function resolve( depth, deferred, handler, special ) { - return function() { - var that = this, - args = arguments, - mightThrow = function() { - var returned, then; - - // Support: Promises/A+ section 2.3.3.3.3 - // https://promisesaplus.com/#point-59 - // Ignore double-resolution attempts - if ( depth < maxDepth ) { - return; - } - - returned = handler.apply( that, args ); - - // Support: Promises/A+ section 2.3.1 - // https://promisesaplus.com/#point-48 - if ( returned === deferred.promise() ) { - throw new TypeError( "Thenable self-resolution" ); - } - - // Support: Promises/A+ sections 2.3.3.1, 3.5 - // https://promisesaplus.com/#point-54 - // https://promisesaplus.com/#point-75 - // Retrieve `then` only once - then = returned && - - // Support: Promises/A+ section 2.3.4 - // https://promisesaplus.com/#point-64 - // Only check objects and functions for thenability - ( typeof returned === "object" || - typeof returned === "function" ) && - returned.then; - - // Handle a returned thenable - if ( isFunction( then ) ) { - - // Special processors (notify) just wait for resolution - if ( special ) { - then.call( - returned, - resolve( maxDepth, deferred, Identity, special ), - resolve( maxDepth, deferred, Thrower, special ) - ); - - // Normal processors (resolve) also hook into progress - } else { - - // ...and disregard older resolution values - maxDepth++; - - then.call( - returned, - resolve( maxDepth, deferred, Identity, special ), - resolve( maxDepth, deferred, Thrower, special ), - resolve( maxDepth, deferred, Identity, - deferred.notifyWith ) - ); - } - - // Handle all other returned values - } else { - - // Only substitute handlers pass on context - // and multiple values (non-spec behavior) - if ( handler !== Identity ) { - that = undefined; - args = [ returned ]; - } - - // Process the value(s) - // Default process is resolve - ( special || deferred.resolveWith )( that, args ); - } - }, - - // Only normal processors (resolve) catch and reject exceptions - process = special ? - mightThrow : - function() { - try { - mightThrow(); - } catch ( e ) { - - if ( jQuery.Deferred.exceptionHook ) { - jQuery.Deferred.exceptionHook( e, - process.stackTrace ); - } - - // Support: Promises/A+ section 2.3.3.3.4.1 - // https://promisesaplus.com/#point-61 - // Ignore post-resolution exceptions - if ( depth + 1 >= maxDepth ) { - - // Only substitute handlers pass on context - // and multiple values (non-spec behavior) - if ( handler !== Thrower ) { - that = undefined; - args = [ e ]; - } - - deferred.rejectWith( that, args ); - } - } - }; - - // Support: Promises/A+ section 2.3.3.3.1 - // https://promisesaplus.com/#point-57 - // Re-resolve promises immediately to dodge false rejection from - // subsequent errors - if ( depth ) { - process(); - } else { - - // Call an optional hook to record the stack, in case of exception - // since it's otherwise lost when execution goes async - if ( jQuery.Deferred.getStackHook ) { - process.stackTrace = jQuery.Deferred.getStackHook(); - } - window.setTimeout( process ); - } - }; - } - - return jQuery.Deferred( function( newDefer ) { - - // progress_handlers.add( ... ) - tuples[ 0 ][ 3 ].add( - resolve( - 0, - newDefer, - isFunction( onProgress ) ? - onProgress : - Identity, - newDefer.notifyWith - ) - ); - - // fulfilled_handlers.add( ... ) - tuples[ 1 ][ 3 ].add( - resolve( - 0, - newDefer, - isFunction( onFulfilled ) ? - onFulfilled : - Identity - ) - ); - - // rejected_handlers.add( ... ) - tuples[ 2 ][ 3 ].add( - resolve( - 0, - newDefer, - isFunction( onRejected ) ? - onRejected : - Thrower - ) - ); - } ).promise(); - }, - - // Get a promise for this deferred - // If obj is provided, the promise aspect is added to the object - promise: function( obj ) { - return obj != null ? jQuery.extend( obj, promise ) : promise; - } - }, - deferred = {}; - - // Add list-specific methods - jQuery.each( tuples, function( i, tuple ) { - var list = tuple[ 2 ], - stateString = tuple[ 5 ]; - - // promise.progress = list.add - // promise.done = list.add - // promise.fail = list.add - promise[ tuple[ 1 ] ] = list.add; - - // Handle state - if ( stateString ) { - list.add( - function() { - - // state = "resolved" (i.e., fulfilled) - // state = "rejected" - state = stateString; - }, - - // rejected_callbacks.disable - // fulfilled_callbacks.disable - tuples[ 3 - i ][ 2 ].disable, - - // rejected_handlers.disable - // fulfilled_handlers.disable - tuples[ 3 - i ][ 3 ].disable, - - // progress_callbacks.lock - tuples[ 0 ][ 2 ].lock, - - // progress_handlers.lock - tuples[ 0 ][ 3 ].lock - ); - } - - // progress_handlers.fire - // fulfilled_handlers.fire - // rejected_handlers.fire - list.add( tuple[ 3 ].fire ); - - // deferred.notify = function() { deferred.notifyWith(...) } - // deferred.resolve = function() { deferred.resolveWith(...) } - // deferred.reject = function() { deferred.rejectWith(...) } - deferred[ tuple[ 0 ] ] = function() { - deferred[ tuple[ 0 ] + "With" ]( this === deferred ? undefined : this, arguments ); - return this; - }; - - // deferred.notifyWith = list.fireWith - // deferred.resolveWith = list.fireWith - // deferred.rejectWith = list.fireWith - deferred[ tuple[ 0 ] + "With" ] = list.fireWith; - } ); - - // Make the deferred a promise - promise.promise( deferred ); - - // Call given func if any - if ( func ) { - func.call( deferred, deferred ); - } - - // All done! - return deferred; - }, - - // Deferred helper - when: function( singleValue ) { - var - - // count of uncompleted subordinates - remaining = arguments.length, - - // count of unprocessed arguments - i = remaining, - - // subordinate fulfillment data - resolveContexts = Array( i ), - resolveValues = slice.call( arguments ), - - // the master Deferred - master = jQuery.Deferred(), - - // subordinate callback factory - updateFunc = function( i ) { - return function( value ) { - resolveContexts[ i ] = this; - resolveValues[ i ] = arguments.length > 1 ? slice.call( arguments ) : value; - if ( !( --remaining ) ) { - master.resolveWith( resolveContexts, resolveValues ); - } - }; - }; - - // Single- and empty arguments are adopted like Promise.resolve - if ( remaining <= 1 ) { - adoptValue( singleValue, master.done( updateFunc( i ) ).resolve, master.reject, - !remaining ); - - // Use .then() to unwrap secondary thenables (cf. gh-3000) - if ( master.state() === "pending" || - isFunction( resolveValues[ i ] && resolveValues[ i ].then ) ) { - - return master.then(); - } - } - - // Multiple arguments are aggregated like Promise.all array elements - while ( i-- ) { - adoptValue( resolveValues[ i ], updateFunc( i ), master.reject ); - } - - return master.promise(); - } -} ); - - -// These usually indicate a programmer mistake during development, -// warn about them ASAP rather than swallowing them by default. -var rerrorNames = /^(Eval|Internal|Range|Reference|Syntax|Type|URI)Error$/; - -jQuery.Deferred.exceptionHook = function( error, stack ) { - - // Support: IE 8 - 9 only - // Console exists when dev tools are open, which can happen at any time - if ( window.console && window.console.warn && error && rerrorNames.test( error.name ) ) { - window.console.warn( "jQuery.Deferred exception: " + error.message, error.stack, stack ); - } -}; - - - - -jQuery.readyException = function( error ) { - window.setTimeout( function() { - throw error; - } ); -}; - - - - -// The deferred used on DOM ready -var readyList = jQuery.Deferred(); - -jQuery.fn.ready = function( fn ) { - - readyList - .then( fn ) - - // Wrap jQuery.readyException in a function so that the lookup - // happens at the time of error handling instead of callback - // registration. - .catch( function( error ) { - jQuery.readyException( error ); - } ); - - return this; -}; - -jQuery.extend( { - - // Is the DOM ready to be used? Set to true once it occurs. - isReady: false, - - // A counter to track how many items to wait for before - // the ready event fires. See #6781 - readyWait: 1, - - // Handle when the DOM is ready - ready: function( wait ) { - - // Abort if there are pending holds or we're already ready - if ( wait === true ? --jQuery.readyWait : jQuery.isReady ) { - return; - } - - // Remember that the DOM is ready - jQuery.isReady = true; - - // If a normal DOM Ready event fired, decrement, and wait if need be - if ( wait !== true && --jQuery.readyWait > 0 ) { - return; - } - - // If there are functions bound, to execute - readyList.resolveWith( document, [ jQuery ] ); - } -} ); - -jQuery.ready.then = readyList.then; - -// The ready event handler and self cleanup method -function completed() { - document.removeEventListener( "DOMContentLoaded", completed ); - window.removeEventListener( "load", completed ); - jQuery.ready(); -} - -// Catch cases where $(document).ready() is called -// after the browser event has already occurred. -// Support: IE <=9 - 10 only -// Older IE sometimes signals "interactive" too soon -if ( document.readyState === "complete" || - ( document.readyState !== "loading" && !document.documentElement.doScroll ) ) { - - // Handle it asynchronously to allow scripts the opportunity to delay ready - window.setTimeout( jQuery.ready ); - -} else { - - // Use the handy event callback - document.addEventListener( "DOMContentLoaded", completed ); - - // A fallback to window.onload, that will always work - window.addEventListener( "load", completed ); -} - - - - -// Multifunctional method to get and set values of a collection -// The value/s can optionally be executed if it's a function -var access = function( elems, fn, key, value, chainable, emptyGet, raw ) { - var i = 0, - len = elems.length, - bulk = key == null; - - // Sets many values - if ( toType( key ) === "object" ) { - chainable = true; - for ( i in key ) { - access( elems, fn, i, key[ i ], true, emptyGet, raw ); - } - - // Sets one value - } else if ( value !== undefined ) { - chainable = true; - - if ( !isFunction( value ) ) { - raw = true; - } - - if ( bulk ) { - - // Bulk operations run against the entire set - if ( raw ) { - fn.call( elems, value ); - fn = null; - - // ...except when executing function values - } else { - bulk = fn; - fn = function( elem, _key, value ) { - return bulk.call( jQuery( elem ), value ); - }; - } - } - - if ( fn ) { - for ( ; i < len; i++ ) { - fn( - elems[ i ], key, raw ? - value : - value.call( elems[ i ], i, fn( elems[ i ], key ) ) - ); - } - } - } - - if ( chainable ) { - return elems; - } - - // Gets - if ( bulk ) { - return fn.call( elems ); - } - - return len ? fn( elems[ 0 ], key ) : emptyGet; -}; - - -// Matches dashed string for camelizing -var rmsPrefix = /^-ms-/, - rdashAlpha = /-([a-z])/g; - -// Used by camelCase as callback to replace() -function fcamelCase( _all, letter ) { - return letter.toUpperCase(); -} - -// Convert dashed to camelCase; used by the css and data modules -// Support: IE <=9 - 11, Edge 12 - 15 -// Microsoft forgot to hump their vendor prefix (#9572) -function camelCase( string ) { - return string.replace( rmsPrefix, "ms-" ).replace( rdashAlpha, fcamelCase ); -} -var acceptData = function( owner ) { - - // Accepts only: - // - Node - // - Node.ELEMENT_NODE - // - Node.DOCUMENT_NODE - // - Object - // - Any - return owner.nodeType === 1 || owner.nodeType === 9 || !( +owner.nodeType ); -}; - - - - -function Data() { - this.expando = jQuery.expando + Data.uid++; -} - -Data.uid = 1; - -Data.prototype = { - - cache: function( owner ) { - - // Check if the owner object already has a cache - var value = owner[ this.expando ]; - - // If not, create one - if ( !value ) { - value = {}; - - // We can accept data for non-element nodes in modern browsers, - // but we should not, see #8335. - // Always return an empty object. - if ( acceptData( owner ) ) { - - // If it is a node unlikely to be stringify-ed or looped over - // use plain assignment - if ( owner.nodeType ) { - owner[ this.expando ] = value; - - // Otherwise secure it in a non-enumerable property - // configurable must be true to allow the property to be - // deleted when data is removed - } else { - Object.defineProperty( owner, this.expando, { - value: value, - configurable: true - } ); - } - } - } - - return value; - }, - set: function( owner, data, value ) { - var prop, - cache = this.cache( owner ); - - // Handle: [ owner, key, value ] args - // Always use camelCase key (gh-2257) - if ( typeof data === "string" ) { - cache[ camelCase( data ) ] = value; - - // Handle: [ owner, { properties } ] args - } else { - - // Copy the properties one-by-one to the cache object - for ( prop in data ) { - cache[ camelCase( prop ) ] = data[ prop ]; - } - } - return cache; - }, - get: function( owner, key ) { - return key === undefined ? - this.cache( owner ) : - - // Always use camelCase key (gh-2257) - owner[ this.expando ] && owner[ this.expando ][ camelCase( key ) ]; - }, - access: function( owner, key, value ) { - - // In cases where either: - // - // 1. No key was specified - // 2. A string key was specified, but no value provided - // - // Take the "read" path and allow the get method to determine - // which value to return, respectively either: - // - // 1. The entire cache object - // 2. The data stored at the key - // - if ( key === undefined || - ( ( key && typeof key === "string" ) && value === undefined ) ) { - - return this.get( owner, key ); - } - - // When the key is not a string, or both a key and value - // are specified, set or extend (existing objects) with either: - // - // 1. An object of properties - // 2. A key and value - // - this.set( owner, key, value ); - - // Since the "set" path can have two possible entry points - // return the expected data based on which path was taken[*] - return value !== undefined ? value : key; - }, - remove: function( owner, key ) { - var i, - cache = owner[ this.expando ]; - - if ( cache === undefined ) { - return; - } - - if ( key !== undefined ) { - - // Support array or space separated string of keys - if ( Array.isArray( key ) ) { - - // If key is an array of keys... - // We always set camelCase keys, so remove that. - key = key.map( camelCase ); - } else { - key = camelCase( key ); - - // If a key with the spaces exists, use it. - // Otherwise, create an array by matching non-whitespace - key = key in cache ? - [ key ] : - ( key.match( rnothtmlwhite ) || [] ); - } - - i = key.length; - - while ( i-- ) { - delete cache[ key[ i ] ]; - } - } - - // Remove the expando if there's no more data - if ( key === undefined || jQuery.isEmptyObject( cache ) ) { - - // Support: Chrome <=35 - 45 - // Webkit & Blink performance suffers when deleting properties - // from DOM nodes, so set to undefined instead - // https://bugs.chromium.org/p/chromium/issues/detail?id=378607 (bug restricted) - if ( owner.nodeType ) { - owner[ this.expando ] = undefined; - } else { - delete owner[ this.expando ]; - } - } - }, - hasData: function( owner ) { - var cache = owner[ this.expando ]; - return cache !== undefined && !jQuery.isEmptyObject( cache ); - } -}; -var dataPriv = new Data(); - -var dataUser = new Data(); - - - -// Implementation Summary -// -// 1. Enforce API surface and semantic compatibility with 1.9.x branch -// 2. Improve the module's maintainability by reducing the storage -// paths to a single mechanism. -// 3. Use the same single mechanism to support "private" and "user" data. -// 4. _Never_ expose "private" data to user code (TODO: Drop _data, _removeData) -// 5. Avoid exposing implementation details on user objects (eg. expando properties) -// 6. Provide a clear path for implementation upgrade to WeakMap in 2014 - -var rbrace = /^(?:\{[\w\W]*\}|\[[\w\W]*\])$/, - rmultiDash = /[A-Z]/g; - -function getData( data ) { - if ( data === "true" ) { - return true; - } - - if ( data === "false" ) { - return false; - } - - if ( data === "null" ) { - return null; - } - - // Only convert to a number if it doesn't change the string - if ( data === +data + "" ) { - return +data; - } - - if ( rbrace.test( data ) ) { - return JSON.parse( data ); - } - - return data; -} - -function dataAttr( elem, key, data ) { - var name; - - // If nothing was found internally, try to fetch any - // data from the HTML5 data-* attribute - if ( data === undefined && elem.nodeType === 1 ) { - name = "data-" + key.replace( rmultiDash, "-$&" ).toLowerCase(); - data = elem.getAttribute( name ); - - if ( typeof data === "string" ) { - try { - data = getData( data ); - } catch ( e ) {} - - // Make sure we set the data so it isn't changed later - dataUser.set( elem, key, data ); - } else { - data = undefined; - } - } - return data; -} - -jQuery.extend( { - hasData: function( elem ) { - return dataUser.hasData( elem ) || dataPriv.hasData( elem ); - }, - - data: function( elem, name, data ) { - return dataUser.access( elem, name, data ); - }, - - removeData: function( elem, name ) { - dataUser.remove( elem, name ); - }, - - // TODO: Now that all calls to _data and _removeData have been replaced - // with direct calls to dataPriv methods, these can be deprecated. - _data: function( elem, name, data ) { - return dataPriv.access( elem, name, data ); - }, - - _removeData: function( elem, name ) { - dataPriv.remove( elem, name ); - } -} ); - -jQuery.fn.extend( { - data: function( key, value ) { - var i, name, data, - elem = this[ 0 ], - attrs = elem && elem.attributes; - - // Gets all values - if ( key === undefined ) { - if ( this.length ) { - data = dataUser.get( elem ); - - if ( elem.nodeType === 1 && !dataPriv.get( elem, "hasDataAttrs" ) ) { - i = attrs.length; - while ( i-- ) { - - // Support: IE 11 only - // The attrs elements can be null (#14894) - if ( attrs[ i ] ) { - name = attrs[ i ].name; - if ( name.indexOf( "data-" ) === 0 ) { - name = camelCase( name.slice( 5 ) ); - dataAttr( elem, name, data[ name ] ); - } - } - } - dataPriv.set( elem, "hasDataAttrs", true ); - } - } - - return data; - } - - // Sets multiple values - if ( typeof key === "object" ) { - return this.each( function() { - dataUser.set( this, key ); - } ); - } - - return access( this, function( value ) { - var data; - - // The calling jQuery object (element matches) is not empty - // (and therefore has an element appears at this[ 0 ]) and the - // `value` parameter was not undefined. An empty jQuery object - // will result in `undefined` for elem = this[ 0 ] which will - // throw an exception if an attempt to read a data cache is made. - if ( elem && value === undefined ) { - - // Attempt to get data from the cache - // The key will always be camelCased in Data - data = dataUser.get( elem, key ); - if ( data !== undefined ) { - return data; - } - - // Attempt to "discover" the data in - // HTML5 custom data-* attrs - data = dataAttr( elem, key ); - if ( data !== undefined ) { - return data; - } - - // We tried really hard, but the data doesn't exist. - return; - } - - // Set the data... - this.each( function() { - - // We always store the camelCased key - dataUser.set( this, key, value ); - } ); - }, null, value, arguments.length > 1, null, true ); - }, - - removeData: function( key ) { - return this.each( function() { - dataUser.remove( this, key ); - } ); - } -} ); - - -jQuery.extend( { - queue: function( elem, type, data ) { - var queue; - - if ( elem ) { - type = ( type || "fx" ) + "queue"; - queue = dataPriv.get( elem, type ); - - // Speed up dequeue by getting out quickly if this is just a lookup - if ( data ) { - if ( !queue || Array.isArray( data ) ) { - queue = dataPriv.access( elem, type, jQuery.makeArray( data ) ); - } else { - queue.push( data ); - } - } - return queue || []; - } - }, - - dequeue: function( elem, type ) { - type = type || "fx"; - - var queue = jQuery.queue( elem, type ), - startLength = queue.length, - fn = queue.shift(), - hooks = jQuery._queueHooks( elem, type ), - next = function() { - jQuery.dequeue( elem, type ); - }; - - // If the fx queue is dequeued, always remove the progress sentinel - if ( fn === "inprogress" ) { - fn = queue.shift(); - startLength--; - } - - if ( fn ) { - - // Add a progress sentinel to prevent the fx queue from being - // automatically dequeued - if ( type === "fx" ) { - queue.unshift( "inprogress" ); - } - - // Clear up the last queue stop function - delete hooks.stop; - fn.call( elem, next, hooks ); - } - - if ( !startLength && hooks ) { - hooks.empty.fire(); - } - }, - - // Not public - generate a queueHooks object, or return the current one - _queueHooks: function( elem, type ) { - var key = type + "queueHooks"; - return dataPriv.get( elem, key ) || dataPriv.access( elem, key, { - empty: jQuery.Callbacks( "once memory" ).add( function() { - dataPriv.remove( elem, [ type + "queue", key ] ); - } ) - } ); - } -} ); - -jQuery.fn.extend( { - queue: function( type, data ) { - var setter = 2; - - if ( typeof type !== "string" ) { - data = type; - type = "fx"; - setter--; - } - - if ( arguments.length < setter ) { - return jQuery.queue( this[ 0 ], type ); - } - - return data === undefined ? - this : - this.each( function() { - var queue = jQuery.queue( this, type, data ); - - // Ensure a hooks for this queue - jQuery._queueHooks( this, type ); - - if ( type === "fx" && queue[ 0 ] !== "inprogress" ) { - jQuery.dequeue( this, type ); - } - } ); - }, - dequeue: function( type ) { - return this.each( function() { - jQuery.dequeue( this, type ); - } ); - }, - clearQueue: function( type ) { - return this.queue( type || "fx", [] ); - }, - - // Get a promise resolved when queues of a certain type - // are emptied (fx is the type by default) - promise: function( type, obj ) { - var tmp, - count = 1, - defer = jQuery.Deferred(), - elements = this, - i = this.length, - resolve = function() { - if ( !( --count ) ) { - defer.resolveWith( elements, [ elements ] ); - } - }; - - if ( typeof type !== "string" ) { - obj = type; - type = undefined; - } - type = type || "fx"; - - while ( i-- ) { - tmp = dataPriv.get( elements[ i ], type + "queueHooks" ); - if ( tmp && tmp.empty ) { - count++; - tmp.empty.add( resolve ); - } - } - resolve(); - return defer.promise( obj ); - } -} ); -var pnum = ( /[+-]?(?:\d*\.|)\d+(?:[eE][+-]?\d+|)/ ).source; - -var rcssNum = new RegExp( "^(?:([+-])=|)(" + pnum + ")([a-z%]*)$", "i" ); - - -var cssExpand = [ "Top", "Right", "Bottom", "Left" ]; - -var documentElement = document.documentElement; - - - - var isAttached = function( elem ) { - return jQuery.contains( elem.ownerDocument, elem ); - }, - composed = { composed: true }; - - // Support: IE 9 - 11+, Edge 12 - 18+, iOS 10.0 - 10.2 only - // Check attachment across shadow DOM boundaries when possible (gh-3504) - // Support: iOS 10.0-10.2 only - // Early iOS 10 versions support `attachShadow` but not `getRootNode`, - // leading to errors. We need to check for `getRootNode`. - if ( documentElement.getRootNode ) { - isAttached = function( elem ) { - return jQuery.contains( elem.ownerDocument, elem ) || - elem.getRootNode( composed ) === elem.ownerDocument; - }; - } -var isHiddenWithinTree = function( elem, el ) { - - // isHiddenWithinTree might be called from jQuery#filter function; - // in that case, element will be second argument - elem = el || elem; - - // Inline style trumps all - return elem.style.display === "none" || - elem.style.display === "" && - - // Otherwise, check computed style - // Support: Firefox <=43 - 45 - // Disconnected elements can have computed display: none, so first confirm that elem is - // in the document. - isAttached( elem ) && - - jQuery.css( elem, "display" ) === "none"; - }; - - - -function adjustCSS( elem, prop, valueParts, tween ) { - var adjusted, scale, - maxIterations = 20, - currentValue = tween ? - function() { - return tween.cur(); - } : - function() { - return jQuery.css( elem, prop, "" ); - }, - initial = currentValue(), - unit = valueParts && valueParts[ 3 ] || ( jQuery.cssNumber[ prop ] ? "" : "px" ), - - // Starting value computation is required for potential unit mismatches - initialInUnit = elem.nodeType && - ( jQuery.cssNumber[ prop ] || unit !== "px" && +initial ) && - rcssNum.exec( jQuery.css( elem, prop ) ); - - if ( initialInUnit && initialInUnit[ 3 ] !== unit ) { - - // Support: Firefox <=54 - // Halve the iteration target value to prevent interference from CSS upper bounds (gh-2144) - initial = initial / 2; - - // Trust units reported by jQuery.css - unit = unit || initialInUnit[ 3 ]; - - // Iteratively approximate from a nonzero starting point - initialInUnit = +initial || 1; - - while ( maxIterations-- ) { - - // Evaluate and update our best guess (doubling guesses that zero out). - // Finish if the scale equals or crosses 1 (making the old*new product non-positive). - jQuery.style( elem, prop, initialInUnit + unit ); - if ( ( 1 - scale ) * ( 1 - ( scale = currentValue() / initial || 0.5 ) ) <= 0 ) { - maxIterations = 0; - } - initialInUnit = initialInUnit / scale; - - } - - initialInUnit = initialInUnit * 2; - jQuery.style( elem, prop, initialInUnit + unit ); - - // Make sure we update the tween properties later on - valueParts = valueParts || []; - } - - if ( valueParts ) { - initialInUnit = +initialInUnit || +initial || 0; - - // Apply relative offset (+=/-=) if specified - adjusted = valueParts[ 1 ] ? - initialInUnit + ( valueParts[ 1 ] + 1 ) * valueParts[ 2 ] : - +valueParts[ 2 ]; - if ( tween ) { - tween.unit = unit; - tween.start = initialInUnit; - tween.end = adjusted; - } - } - return adjusted; -} - - -var defaultDisplayMap = {}; - -function getDefaultDisplay( elem ) { - var temp, - doc = elem.ownerDocument, - nodeName = elem.nodeName, - display = defaultDisplayMap[ nodeName ]; - - if ( display ) { - return display; - } - - temp = doc.body.appendChild( doc.createElement( nodeName ) ); - display = jQuery.css( temp, "display" ); - - temp.parentNode.removeChild( temp ); - - if ( display === "none" ) { - display = "block"; - } - defaultDisplayMap[ nodeName ] = display; - - return display; -} - -function showHide( elements, show ) { - var display, elem, - values = [], - index = 0, - length = elements.length; - - // Determine new display value for elements that need to change - for ( ; index < length; index++ ) { - elem = elements[ index ]; - if ( !elem.style ) { - continue; - } - - display = elem.style.display; - if ( show ) { - - // Since we force visibility upon cascade-hidden elements, an immediate (and slow) - // check is required in this first loop unless we have a nonempty display value (either - // inline or about-to-be-restored) - if ( display === "none" ) { - values[ index ] = dataPriv.get( elem, "display" ) || null; - if ( !values[ index ] ) { - elem.style.display = ""; - } - } - if ( elem.style.display === "" && isHiddenWithinTree( elem ) ) { - values[ index ] = getDefaultDisplay( elem ); - } - } else { - if ( display !== "none" ) { - values[ index ] = "none"; - - // Remember what we're overwriting - dataPriv.set( elem, "display", display ); - } - } - } - - // Set the display of the elements in a second loop to avoid constant reflow - for ( index = 0; index < length; index++ ) { - if ( values[ index ] != null ) { - elements[ index ].style.display = values[ index ]; - } - } - - return elements; -} - -jQuery.fn.extend( { - show: function() { - return showHide( this, true ); - }, - hide: function() { - return showHide( this ); - }, - toggle: function( state ) { - if ( typeof state === "boolean" ) { - return state ? this.show() : this.hide(); - } - - return this.each( function() { - if ( isHiddenWithinTree( this ) ) { - jQuery( this ).show(); - } else { - jQuery( this ).hide(); - } - } ); - } -} ); -var rcheckableType = ( /^(?:checkbox|radio)$/i ); - -var rtagName = ( /<([a-z][^\/\0>\x20\t\r\n\f]*)/i ); - -var rscriptType = ( /^$|^module$|\/(?:java|ecma)script/i ); - - - -( function() { - var fragment = document.createDocumentFragment(), - div = fragment.appendChild( document.createElement( "div" ) ), - input = document.createElement( "input" ); - - // Support: Android 4.0 - 4.3 only - // Check state lost if the name is set (#11217) - // Support: Windows Web Apps (WWA) - // `name` and `type` must use .setAttribute for WWA (#14901) - input.setAttribute( "type", "radio" ); - input.setAttribute( "checked", "checked" ); - input.setAttribute( "name", "t" ); - - div.appendChild( input ); - - // Support: Android <=4.1 only - // Older WebKit doesn't clone checked state correctly in fragments - support.checkClone = div.cloneNode( true ).cloneNode( true ).lastChild.checked; - - // Support: IE <=11 only - // Make sure textarea (and checkbox) defaultValue is properly cloned - div.innerHTML = ""; - support.noCloneChecked = !!div.cloneNode( true ).lastChild.defaultValue; - - // Support: IE <=9 only - // IE <=9 replaces "; - support.option = !!div.lastChild; -} )(); - - -// We have to close these tags to support XHTML (#13200) -var wrapMap = { - - // XHTML parsers do not magically insert elements in the - // same way that tag soup parsers do. So we cannot shorten - // this by omitting or other required elements. - thead: [ 1, "", "
    " ], - col: [ 2, "", "
    " ], - tr: [ 2, "", "
    " ], - td: [ 3, "", "
    " ], - - _default: [ 0, "", "" ] -}; - -wrapMap.tbody = wrapMap.tfoot = wrapMap.colgroup = wrapMap.caption = wrapMap.thead; -wrapMap.th = wrapMap.td; - -// Support: IE <=9 only -if ( !support.option ) { - wrapMap.optgroup = wrapMap.option = [ 1, "" ]; -} - - -function getAll( context, tag ) { - - // Support: IE <=9 - 11 only - // Use typeof to avoid zero-argument method invocation on host objects (#15151) - var ret; - - if ( typeof context.getElementsByTagName !== "undefined" ) { - ret = context.getElementsByTagName( tag || "*" ); - - } else if ( typeof context.querySelectorAll !== "undefined" ) { - ret = context.querySelectorAll( tag || "*" ); - - } else { - ret = []; - } - - if ( tag === undefined || tag && nodeName( context, tag ) ) { - return jQuery.merge( [ context ], ret ); - } - - return ret; -} - - -// Mark scripts as having already been evaluated -function setGlobalEval( elems, refElements ) { - var i = 0, - l = elems.length; - - for ( ; i < l; i++ ) { - dataPriv.set( - elems[ i ], - "globalEval", - !refElements || dataPriv.get( refElements[ i ], "globalEval" ) - ); - } -} - - -var rhtml = /<|&#?\w+;/; - -function buildFragment( elems, context, scripts, selection, ignored ) { - var elem, tmp, tag, wrap, attached, j, - fragment = context.createDocumentFragment(), - nodes = [], - i = 0, - l = elems.length; - - for ( ; i < l; i++ ) { - elem = elems[ i ]; - - if ( elem || elem === 0 ) { - - // Add nodes directly - if ( toType( elem ) === "object" ) { - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - jQuery.merge( nodes, elem.nodeType ? [ elem ] : elem ); - - // Convert non-html into a text node - } else if ( !rhtml.test( elem ) ) { - nodes.push( context.createTextNode( elem ) ); - - // Convert html into DOM nodes - } else { - tmp = tmp || fragment.appendChild( context.createElement( "div" ) ); - - // Deserialize a standard representation - tag = ( rtagName.exec( elem ) || [ "", "" ] )[ 1 ].toLowerCase(); - wrap = wrapMap[ tag ] || wrapMap._default; - tmp.innerHTML = wrap[ 1 ] + jQuery.htmlPrefilter( elem ) + wrap[ 2 ]; - - // Descend through wrappers to the right content - j = wrap[ 0 ]; - while ( j-- ) { - tmp = tmp.lastChild; - } - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - jQuery.merge( nodes, tmp.childNodes ); - - // Remember the top-level container - tmp = fragment.firstChild; - - // Ensure the created nodes are orphaned (#12392) - tmp.textContent = ""; - } - } - } - - // Remove wrapper from fragment - fragment.textContent = ""; - - i = 0; - while ( ( elem = nodes[ i++ ] ) ) { - - // Skip elements already in the context collection (trac-4087) - if ( selection && jQuery.inArray( elem, selection ) > -1 ) { - if ( ignored ) { - ignored.push( elem ); - } - continue; - } - - attached = isAttached( elem ); - - // Append to fragment - tmp = getAll( fragment.appendChild( elem ), "script" ); - - // Preserve script evaluation history - if ( attached ) { - setGlobalEval( tmp ); - } - - // Capture executables - if ( scripts ) { - j = 0; - while ( ( elem = tmp[ j++ ] ) ) { - if ( rscriptType.test( elem.type || "" ) ) { - scripts.push( elem ); - } - } - } - } - - return fragment; -} - - -var - rkeyEvent = /^key/, - rmouseEvent = /^(?:mouse|pointer|contextmenu|drag|drop)|click/, - rtypenamespace = /^([^.]*)(?:\.(.+)|)/; - -function returnTrue() { - return true; -} - -function returnFalse() { - return false; -} - -// Support: IE <=9 - 11+ -// focus() and blur() are asynchronous, except when they are no-op. -// So expect focus to be synchronous when the element is already active, -// and blur to be synchronous when the element is not already active. -// (focus and blur are always synchronous in other supported browsers, -// this just defines when we can count on it). -function expectSync( elem, type ) { - return ( elem === safeActiveElement() ) === ( type === "focus" ); -} - -// Support: IE <=9 only -// Accessing document.activeElement can throw unexpectedly -// https://bugs.jquery.com/ticket/13393 -function safeActiveElement() { - try { - return document.activeElement; - } catch ( err ) { } -} - -function on( elem, types, selector, data, fn, one ) { - var origFn, type; - - // Types can be a map of types/handlers - if ( typeof types === "object" ) { - - // ( types-Object, selector, data ) - if ( typeof selector !== "string" ) { - - // ( types-Object, data ) - data = data || selector; - selector = undefined; - } - for ( type in types ) { - on( elem, type, selector, data, types[ type ], one ); - } - return elem; - } - - if ( data == null && fn == null ) { - - // ( types, fn ) - fn = selector; - data = selector = undefined; - } else if ( fn == null ) { - if ( typeof selector === "string" ) { - - // ( types, selector, fn ) - fn = data; - data = undefined; - } else { - - // ( types, data, fn ) - fn = data; - data = selector; - selector = undefined; - } - } - if ( fn === false ) { - fn = returnFalse; - } else if ( !fn ) { - return elem; - } - - if ( one === 1 ) { - origFn = fn; - fn = function( event ) { - - // Can use an empty set, since event contains the info - jQuery().off( event ); - return origFn.apply( this, arguments ); - }; - - // Use same guid so caller can remove using origFn - fn.guid = origFn.guid || ( origFn.guid = jQuery.guid++ ); - } - return elem.each( function() { - jQuery.event.add( this, types, fn, data, selector ); - } ); -} - -/* - * Helper functions for managing events -- not part of the public interface. - * Props to Dean Edwards' addEvent library for many of the ideas. - */ -jQuery.event = { - - global: {}, - - add: function( elem, types, handler, data, selector ) { - - var handleObjIn, eventHandle, tmp, - events, t, handleObj, - special, handlers, type, namespaces, origType, - elemData = dataPriv.get( elem ); - - // Only attach events to objects that accept data - if ( !acceptData( elem ) ) { - return; - } - - // Caller can pass in an object of custom data in lieu of the handler - if ( handler.handler ) { - handleObjIn = handler; - handler = handleObjIn.handler; - selector = handleObjIn.selector; - } - - // Ensure that invalid selectors throw exceptions at attach time - // Evaluate against documentElement in case elem is a non-element node (e.g., document) - if ( selector ) { - jQuery.find.matchesSelector( documentElement, selector ); - } - - // Make sure that the handler has a unique ID, used to find/remove it later - if ( !handler.guid ) { - handler.guid = jQuery.guid++; - } - - // Init the element's event structure and main handler, if this is the first - if ( !( events = elemData.events ) ) { - events = elemData.events = Object.create( null ); - } - if ( !( eventHandle = elemData.handle ) ) { - eventHandle = elemData.handle = function( e ) { - - // Discard the second event of a jQuery.event.trigger() and - // when an event is called after a page has unloaded - return typeof jQuery !== "undefined" && jQuery.event.triggered !== e.type ? - jQuery.event.dispatch.apply( elem, arguments ) : undefined; - }; - } - - // Handle multiple events separated by a space - types = ( types || "" ).match( rnothtmlwhite ) || [ "" ]; - t = types.length; - while ( t-- ) { - tmp = rtypenamespace.exec( types[ t ] ) || []; - type = origType = tmp[ 1 ]; - namespaces = ( tmp[ 2 ] || "" ).split( "." ).sort(); - - // There *must* be a type, no attaching namespace-only handlers - if ( !type ) { - continue; - } - - // If event changes its type, use the special event handlers for the changed type - special = jQuery.event.special[ type ] || {}; - - // If selector defined, determine special event api type, otherwise given type - type = ( selector ? special.delegateType : special.bindType ) || type; - - // Update special based on newly reset type - special = jQuery.event.special[ type ] || {}; - - // handleObj is passed to all event handlers - handleObj = jQuery.extend( { - type: type, - origType: origType, - data: data, - handler: handler, - guid: handler.guid, - selector: selector, - needsContext: selector && jQuery.expr.match.needsContext.test( selector ), - namespace: namespaces.join( "." ) - }, handleObjIn ); - - // Init the event handler queue if we're the first - if ( !( handlers = events[ type ] ) ) { - handlers = events[ type ] = []; - handlers.delegateCount = 0; - - // Only use addEventListener if the special events handler returns false - if ( !special.setup || - special.setup.call( elem, data, namespaces, eventHandle ) === false ) { - - if ( elem.addEventListener ) { - elem.addEventListener( type, eventHandle ); - } - } - } - - if ( special.add ) { - special.add.call( elem, handleObj ); - - if ( !handleObj.handler.guid ) { - handleObj.handler.guid = handler.guid; - } - } - - // Add to the element's handler list, delegates in front - if ( selector ) { - handlers.splice( handlers.delegateCount++, 0, handleObj ); - } else { - handlers.push( handleObj ); - } - - // Keep track of which events have ever been used, for event optimization - jQuery.event.global[ type ] = true; - } - - }, - - // Detach an event or set of events from an element - remove: function( elem, types, handler, selector, mappedTypes ) { - - var j, origCount, tmp, - events, t, handleObj, - special, handlers, type, namespaces, origType, - elemData = dataPriv.hasData( elem ) && dataPriv.get( elem ); - - if ( !elemData || !( events = elemData.events ) ) { - return; - } - - // Once for each type.namespace in types; type may be omitted - types = ( types || "" ).match( rnothtmlwhite ) || [ "" ]; - t = types.length; - while ( t-- ) { - tmp = rtypenamespace.exec( types[ t ] ) || []; - type = origType = tmp[ 1 ]; - namespaces = ( tmp[ 2 ] || "" ).split( "." ).sort(); - - // Unbind all events (on this namespace, if provided) for the element - if ( !type ) { - for ( type in events ) { - jQuery.event.remove( elem, type + types[ t ], handler, selector, true ); - } - continue; - } - - special = jQuery.event.special[ type ] || {}; - type = ( selector ? special.delegateType : special.bindType ) || type; - handlers = events[ type ] || []; - tmp = tmp[ 2 ] && - new RegExp( "(^|\\.)" + namespaces.join( "\\.(?:.*\\.|)" ) + "(\\.|$)" ); - - // Remove matching events - origCount = j = handlers.length; - while ( j-- ) { - handleObj = handlers[ j ]; - - if ( ( mappedTypes || origType === handleObj.origType ) && - ( !handler || handler.guid === handleObj.guid ) && - ( !tmp || tmp.test( handleObj.namespace ) ) && - ( !selector || selector === handleObj.selector || - selector === "**" && handleObj.selector ) ) { - handlers.splice( j, 1 ); - - if ( handleObj.selector ) { - handlers.delegateCount--; - } - if ( special.remove ) { - special.remove.call( elem, handleObj ); - } - } - } - - // Remove generic event handler if we removed something and no more handlers exist - // (avoids potential for endless recursion during removal of special event handlers) - if ( origCount && !handlers.length ) { - if ( !special.teardown || - special.teardown.call( elem, namespaces, elemData.handle ) === false ) { - - jQuery.removeEvent( elem, type, elemData.handle ); - } - - delete events[ type ]; - } - } - - // Remove data and the expando if it's no longer used - if ( jQuery.isEmptyObject( events ) ) { - dataPriv.remove( elem, "handle events" ); - } - }, - - dispatch: function( nativeEvent ) { - - var i, j, ret, matched, handleObj, handlerQueue, - args = new Array( arguments.length ), - - // Make a writable jQuery.Event from the native event object - event = jQuery.event.fix( nativeEvent ), - - handlers = ( - dataPriv.get( this, "events" ) || Object.create( null ) - )[ event.type ] || [], - special = jQuery.event.special[ event.type ] || {}; - - // Use the fix-ed jQuery.Event rather than the (read-only) native event - args[ 0 ] = event; - - for ( i = 1; i < arguments.length; i++ ) { - args[ i ] = arguments[ i ]; - } - - event.delegateTarget = this; - - // Call the preDispatch hook for the mapped type, and let it bail if desired - if ( special.preDispatch && special.preDispatch.call( this, event ) === false ) { - return; - } - - // Determine handlers - handlerQueue = jQuery.event.handlers.call( this, event, handlers ); - - // Run delegates first; they may want to stop propagation beneath us - i = 0; - while ( ( matched = handlerQueue[ i++ ] ) && !event.isPropagationStopped() ) { - event.currentTarget = matched.elem; - - j = 0; - while ( ( handleObj = matched.handlers[ j++ ] ) && - !event.isImmediatePropagationStopped() ) { - - // If the event is namespaced, then each handler is only invoked if it is - // specially universal or its namespaces are a superset of the event's. - if ( !event.rnamespace || handleObj.namespace === false || - event.rnamespace.test( handleObj.namespace ) ) { - - event.handleObj = handleObj; - event.data = handleObj.data; - - ret = ( ( jQuery.event.special[ handleObj.origType ] || {} ).handle || - handleObj.handler ).apply( matched.elem, args ); - - if ( ret !== undefined ) { - if ( ( event.result = ret ) === false ) { - event.preventDefault(); - event.stopPropagation(); - } - } - } - } - } - - // Call the postDispatch hook for the mapped type - if ( special.postDispatch ) { - special.postDispatch.call( this, event ); - } - - return event.result; - }, - - handlers: function( event, handlers ) { - var i, handleObj, sel, matchedHandlers, matchedSelectors, - handlerQueue = [], - delegateCount = handlers.delegateCount, - cur = event.target; - - // Find delegate handlers - if ( delegateCount && - - // Support: IE <=9 - // Black-hole SVG instance trees (trac-13180) - cur.nodeType && - - // Support: Firefox <=42 - // Suppress spec-violating clicks indicating a non-primary pointer button (trac-3861) - // https://www.w3.org/TR/DOM-Level-3-Events/#event-type-click - // Support: IE 11 only - // ...but not arrow key "clicks" of radio inputs, which can have `button` -1 (gh-2343) - !( event.type === "click" && event.button >= 1 ) ) { - - for ( ; cur !== this; cur = cur.parentNode || this ) { - - // Don't check non-elements (#13208) - // Don't process clicks on disabled elements (#6911, #8165, #11382, #11764) - if ( cur.nodeType === 1 && !( event.type === "click" && cur.disabled === true ) ) { - matchedHandlers = []; - matchedSelectors = {}; - for ( i = 0; i < delegateCount; i++ ) { - handleObj = handlers[ i ]; - - // Don't conflict with Object.prototype properties (#13203) - sel = handleObj.selector + " "; - - if ( matchedSelectors[ sel ] === undefined ) { - matchedSelectors[ sel ] = handleObj.needsContext ? - jQuery( sel, this ).index( cur ) > -1 : - jQuery.find( sel, this, null, [ cur ] ).length; - } - if ( matchedSelectors[ sel ] ) { - matchedHandlers.push( handleObj ); - } - } - if ( matchedHandlers.length ) { - handlerQueue.push( { elem: cur, handlers: matchedHandlers } ); - } - } - } - } - - // Add the remaining (directly-bound) handlers - cur = this; - if ( delegateCount < handlers.length ) { - handlerQueue.push( { elem: cur, handlers: handlers.slice( delegateCount ) } ); - } - - return handlerQueue; - }, - - addProp: function( name, hook ) { - Object.defineProperty( jQuery.Event.prototype, name, { - enumerable: true, - configurable: true, - - get: isFunction( hook ) ? - function() { - if ( this.originalEvent ) { - return hook( this.originalEvent ); - } - } : - function() { - if ( this.originalEvent ) { - return this.originalEvent[ name ]; - } - }, - - set: function( value ) { - Object.defineProperty( this, name, { - enumerable: true, - configurable: true, - writable: true, - value: value - } ); - } - } ); - }, - - fix: function( originalEvent ) { - return originalEvent[ jQuery.expando ] ? - originalEvent : - new jQuery.Event( originalEvent ); - }, - - special: { - load: { - - // Prevent triggered image.load events from bubbling to window.load - noBubble: true - }, - click: { - - // Utilize native event to ensure correct state for checkable inputs - setup: function( data ) { - - // For mutual compressibility with _default, replace `this` access with a local var. - // `|| data` is dead code meant only to preserve the variable through minification. - var el = this || data; - - // Claim the first handler - if ( rcheckableType.test( el.type ) && - el.click && nodeName( el, "input" ) ) { - - // dataPriv.set( el, "click", ... ) - leverageNative( el, "click", returnTrue ); - } - - // Return false to allow normal processing in the caller - return false; - }, - trigger: function( data ) { - - // For mutual compressibility with _default, replace `this` access with a local var. - // `|| data` is dead code meant only to preserve the variable through minification. - var el = this || data; - - // Force setup before triggering a click - if ( rcheckableType.test( el.type ) && - el.click && nodeName( el, "input" ) ) { - - leverageNative( el, "click" ); - } - - // Return non-false to allow normal event-path propagation - return true; - }, - - // For cross-browser consistency, suppress native .click() on links - // Also prevent it if we're currently inside a leveraged native-event stack - _default: function( event ) { - var target = event.target; - return rcheckableType.test( target.type ) && - target.click && nodeName( target, "input" ) && - dataPriv.get( target, "click" ) || - nodeName( target, "a" ); - } - }, - - beforeunload: { - postDispatch: function( event ) { - - // Support: Firefox 20+ - // Firefox doesn't alert if the returnValue field is not set. - if ( event.result !== undefined && event.originalEvent ) { - event.originalEvent.returnValue = event.result; - } - } - } - } -}; - -// Ensure the presence of an event listener that handles manually-triggered -// synthetic events by interrupting progress until reinvoked in response to -// *native* events that it fires directly, ensuring that state changes have -// already occurred before other listeners are invoked. -function leverageNative( el, type, expectSync ) { - - // Missing expectSync indicates a trigger call, which must force setup through jQuery.event.add - if ( !expectSync ) { - if ( dataPriv.get( el, type ) === undefined ) { - jQuery.event.add( el, type, returnTrue ); - } - return; - } - - // Register the controller as a special universal handler for all event namespaces - dataPriv.set( el, type, false ); - jQuery.event.add( el, type, { - namespace: false, - handler: function( event ) { - var notAsync, result, - saved = dataPriv.get( this, type ); - - if ( ( event.isTrigger & 1 ) && this[ type ] ) { - - // Interrupt processing of the outer synthetic .trigger()ed event - // Saved data should be false in such cases, but might be a leftover capture object - // from an async native handler (gh-4350) - if ( !saved.length ) { - - // Store arguments for use when handling the inner native event - // There will always be at least one argument (an event object), so this array - // will not be confused with a leftover capture object. - saved = slice.call( arguments ); - dataPriv.set( this, type, saved ); - - // Trigger the native event and capture its result - // Support: IE <=9 - 11+ - // focus() and blur() are asynchronous - notAsync = expectSync( this, type ); - this[ type ](); - result = dataPriv.get( this, type ); - if ( saved !== result || notAsync ) { - dataPriv.set( this, type, false ); - } else { - result = {}; - } - if ( saved !== result ) { - - // Cancel the outer synthetic event - event.stopImmediatePropagation(); - event.preventDefault(); - return result.value; - } - - // If this is an inner synthetic event for an event with a bubbling surrogate - // (focus or blur), assume that the surrogate already propagated from triggering the - // native event and prevent that from happening again here. - // This technically gets the ordering wrong w.r.t. to `.trigger()` (in which the - // bubbling surrogate propagates *after* the non-bubbling base), but that seems - // less bad than duplication. - } else if ( ( jQuery.event.special[ type ] || {} ).delegateType ) { - event.stopPropagation(); - } - - // If this is a native event triggered above, everything is now in order - // Fire an inner synthetic event with the original arguments - } else if ( saved.length ) { - - // ...and capture the result - dataPriv.set( this, type, { - value: jQuery.event.trigger( - - // Support: IE <=9 - 11+ - // Extend with the prototype to reset the above stopImmediatePropagation() - jQuery.extend( saved[ 0 ], jQuery.Event.prototype ), - saved.slice( 1 ), - this - ) - } ); - - // Abort handling of the native event - event.stopImmediatePropagation(); - } - } - } ); -} - -jQuery.removeEvent = function( elem, type, handle ) { - - // This "if" is needed for plain objects - if ( elem.removeEventListener ) { - elem.removeEventListener( type, handle ); - } -}; - -jQuery.Event = function( src, props ) { - - // Allow instantiation without the 'new' keyword - if ( !( this instanceof jQuery.Event ) ) { - return new jQuery.Event( src, props ); - } - - // Event object - if ( src && src.type ) { - this.originalEvent = src; - this.type = src.type; - - // Events bubbling up the document may have been marked as prevented - // by a handler lower down the tree; reflect the correct value. - this.isDefaultPrevented = src.defaultPrevented || - src.defaultPrevented === undefined && - - // Support: Android <=2.3 only - src.returnValue === false ? - returnTrue : - returnFalse; - - // Create target properties - // Support: Safari <=6 - 7 only - // Target should not be a text node (#504, #13143) - this.target = ( src.target && src.target.nodeType === 3 ) ? - src.target.parentNode : - src.target; - - this.currentTarget = src.currentTarget; - this.relatedTarget = src.relatedTarget; - - // Event type - } else { - this.type = src; - } - - // Put explicitly provided properties onto the event object - if ( props ) { - jQuery.extend( this, props ); - } - - // Create a timestamp if incoming event doesn't have one - this.timeStamp = src && src.timeStamp || Date.now(); - - // Mark it as fixed - this[ jQuery.expando ] = true; -}; - -// jQuery.Event is based on DOM3 Events as specified by the ECMAScript Language Binding -// https://www.w3.org/TR/2003/WD-DOM-Level-3-Events-20030331/ecma-script-binding.html -jQuery.Event.prototype = { - constructor: jQuery.Event, - isDefaultPrevented: returnFalse, - isPropagationStopped: returnFalse, - isImmediatePropagationStopped: returnFalse, - isSimulated: false, - - preventDefault: function() { - var e = this.originalEvent; - - this.isDefaultPrevented = returnTrue; - - if ( e && !this.isSimulated ) { - e.preventDefault(); - } - }, - stopPropagation: function() { - var e = this.originalEvent; - - this.isPropagationStopped = returnTrue; - - if ( e && !this.isSimulated ) { - e.stopPropagation(); - } - }, - stopImmediatePropagation: function() { - var e = this.originalEvent; - - this.isImmediatePropagationStopped = returnTrue; - - if ( e && !this.isSimulated ) { - e.stopImmediatePropagation(); - } - - this.stopPropagation(); - } -}; - -// Includes all common event props including KeyEvent and MouseEvent specific props -jQuery.each( { - altKey: true, - bubbles: true, - cancelable: true, - changedTouches: true, - ctrlKey: true, - detail: true, - eventPhase: true, - metaKey: true, - pageX: true, - pageY: true, - shiftKey: true, - view: true, - "char": true, - code: true, - charCode: true, - key: true, - keyCode: true, - button: true, - buttons: true, - clientX: true, - clientY: true, - offsetX: true, - offsetY: true, - pointerId: true, - pointerType: true, - screenX: true, - screenY: true, - targetTouches: true, - toElement: true, - touches: true, - - which: function( event ) { - var button = event.button; - - // Add which for key events - if ( event.which == null && rkeyEvent.test( event.type ) ) { - return event.charCode != null ? event.charCode : event.keyCode; - } - - // Add which for click: 1 === left; 2 === middle; 3 === right - if ( !event.which && button !== undefined && rmouseEvent.test( event.type ) ) { - if ( button & 1 ) { - return 1; - } - - if ( button & 2 ) { - return 3; - } - - if ( button & 4 ) { - return 2; - } - - return 0; - } - - return event.which; - } -}, jQuery.event.addProp ); - -jQuery.each( { focus: "focusin", blur: "focusout" }, function( type, delegateType ) { - jQuery.event.special[ type ] = { - - // Utilize native event if possible so blur/focus sequence is correct - setup: function() { - - // Claim the first handler - // dataPriv.set( this, "focus", ... ) - // dataPriv.set( this, "blur", ... ) - leverageNative( this, type, expectSync ); - - // Return false to allow normal processing in the caller - return false; - }, - trigger: function() { - - // Force setup before trigger - leverageNative( this, type ); - - // Return non-false to allow normal event-path propagation - return true; - }, - - delegateType: delegateType - }; -} ); - -// Create mouseenter/leave events using mouseover/out and event-time checks -// so that event delegation works in jQuery. -// Do the same for pointerenter/pointerleave and pointerover/pointerout -// -// Support: Safari 7 only -// Safari sends mouseenter too often; see: -// https://bugs.chromium.org/p/chromium/issues/detail?id=470258 -// for the description of the bug (it existed in older Chrome versions as well). -jQuery.each( { - mouseenter: "mouseover", - mouseleave: "mouseout", - pointerenter: "pointerover", - pointerleave: "pointerout" -}, function( orig, fix ) { - jQuery.event.special[ orig ] = { - delegateType: fix, - bindType: fix, - - handle: function( event ) { - var ret, - target = this, - related = event.relatedTarget, - handleObj = event.handleObj; - - // For mouseenter/leave call the handler if related is outside the target. - // NB: No relatedTarget if the mouse left/entered the browser window - if ( !related || ( related !== target && !jQuery.contains( target, related ) ) ) { - event.type = handleObj.origType; - ret = handleObj.handler.apply( this, arguments ); - event.type = fix; - } - return ret; - } - }; -} ); - -jQuery.fn.extend( { - - on: function( types, selector, data, fn ) { - return on( this, types, selector, data, fn ); - }, - one: function( types, selector, data, fn ) { - return on( this, types, selector, data, fn, 1 ); - }, - off: function( types, selector, fn ) { - var handleObj, type; - if ( types && types.preventDefault && types.handleObj ) { - - // ( event ) dispatched jQuery.Event - handleObj = types.handleObj; - jQuery( types.delegateTarget ).off( - handleObj.namespace ? - handleObj.origType + "." + handleObj.namespace : - handleObj.origType, - handleObj.selector, - handleObj.handler - ); - return this; - } - if ( typeof types === "object" ) { - - // ( types-object [, selector] ) - for ( type in types ) { - this.off( type, selector, types[ type ] ); - } - return this; - } - if ( selector === false || typeof selector === "function" ) { - - // ( types [, fn] ) - fn = selector; - selector = undefined; - } - if ( fn === false ) { - fn = returnFalse; - } - return this.each( function() { - jQuery.event.remove( this, types, fn, selector ); - } ); - } -} ); - - -var - - // Support: IE <=10 - 11, Edge 12 - 13 only - // In IE/Edge using regex groups here causes severe slowdowns. - // See https://connect.microsoft.com/IE/feedback/details/1736512/ - rnoInnerhtml = /\s*$/g; - -// Prefer a tbody over its parent table for containing new rows -function manipulationTarget( elem, content ) { - if ( nodeName( elem, "table" ) && - nodeName( content.nodeType !== 11 ? content : content.firstChild, "tr" ) ) { - - return jQuery( elem ).children( "tbody" )[ 0 ] || elem; - } - - return elem; -} - -// Replace/restore the type attribute of script elements for safe DOM manipulation -function disableScript( elem ) { - elem.type = ( elem.getAttribute( "type" ) !== null ) + "/" + elem.type; - return elem; -} -function restoreScript( elem ) { - if ( ( elem.type || "" ).slice( 0, 5 ) === "true/" ) { - elem.type = elem.type.slice( 5 ); - } else { - elem.removeAttribute( "type" ); - } - - return elem; -} - -function cloneCopyEvent( src, dest ) { - var i, l, type, pdataOld, udataOld, udataCur, events; - - if ( dest.nodeType !== 1 ) { - return; - } - - // 1. Copy private data: events, handlers, etc. - if ( dataPriv.hasData( src ) ) { - pdataOld = dataPriv.get( src ); - events = pdataOld.events; - - if ( events ) { - dataPriv.remove( dest, "handle events" ); - - for ( type in events ) { - for ( i = 0, l = events[ type ].length; i < l; i++ ) { - jQuery.event.add( dest, type, events[ type ][ i ] ); - } - } - } - } - - // 2. Copy user data - if ( dataUser.hasData( src ) ) { - udataOld = dataUser.access( src ); - udataCur = jQuery.extend( {}, udataOld ); - - dataUser.set( dest, udataCur ); - } -} - -// Fix IE bugs, see support tests -function fixInput( src, dest ) { - var nodeName = dest.nodeName.toLowerCase(); - - // Fails to persist the checked state of a cloned checkbox or radio button. - if ( nodeName === "input" && rcheckableType.test( src.type ) ) { - dest.checked = src.checked; - - // Fails to return the selected option to the default selected state when cloning options - } else if ( nodeName === "input" || nodeName === "textarea" ) { - dest.defaultValue = src.defaultValue; - } -} - -function domManip( collection, args, callback, ignored ) { - - // Flatten any nested arrays - args = flat( args ); - - var fragment, first, scripts, hasScripts, node, doc, - i = 0, - l = collection.length, - iNoClone = l - 1, - value = args[ 0 ], - valueIsFunction = isFunction( value ); - - // We can't cloneNode fragments that contain checked, in WebKit - if ( valueIsFunction || - ( l > 1 && typeof value === "string" && - !support.checkClone && rchecked.test( value ) ) ) { - return collection.each( function( index ) { - var self = collection.eq( index ); - if ( valueIsFunction ) { - args[ 0 ] = value.call( this, index, self.html() ); - } - domManip( self, args, callback, ignored ); - } ); - } - - if ( l ) { - fragment = buildFragment( args, collection[ 0 ].ownerDocument, false, collection, ignored ); - first = fragment.firstChild; - - if ( fragment.childNodes.length === 1 ) { - fragment = first; - } - - // Require either new content or an interest in ignored elements to invoke the callback - if ( first || ignored ) { - scripts = jQuery.map( getAll( fragment, "script" ), disableScript ); - hasScripts = scripts.length; - - // Use the original fragment for the last item - // instead of the first because it can end up - // being emptied incorrectly in certain situations (#8070). - for ( ; i < l; i++ ) { - node = fragment; - - if ( i !== iNoClone ) { - node = jQuery.clone( node, true, true ); - - // Keep references to cloned scripts for later restoration - if ( hasScripts ) { - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - jQuery.merge( scripts, getAll( node, "script" ) ); - } - } - - callback.call( collection[ i ], node, i ); - } - - if ( hasScripts ) { - doc = scripts[ scripts.length - 1 ].ownerDocument; - - // Reenable scripts - jQuery.map( scripts, restoreScript ); - - // Evaluate executable scripts on first document insertion - for ( i = 0; i < hasScripts; i++ ) { - node = scripts[ i ]; - if ( rscriptType.test( node.type || "" ) && - !dataPriv.access( node, "globalEval" ) && - jQuery.contains( doc, node ) ) { - - if ( node.src && ( node.type || "" ).toLowerCase() !== "module" ) { - - // Optional AJAX dependency, but won't run scripts if not present - if ( jQuery._evalUrl && !node.noModule ) { - jQuery._evalUrl( node.src, { - nonce: node.nonce || node.getAttribute( "nonce" ) - }, doc ); - } - } else { - DOMEval( node.textContent.replace( rcleanScript, "" ), node, doc ); - } - } - } - } - } - } - - return collection; -} - -function remove( elem, selector, keepData ) { - var node, - nodes = selector ? jQuery.filter( selector, elem ) : elem, - i = 0; - - for ( ; ( node = nodes[ i ] ) != null; i++ ) { - if ( !keepData && node.nodeType === 1 ) { - jQuery.cleanData( getAll( node ) ); - } - - if ( node.parentNode ) { - if ( keepData && isAttached( node ) ) { - setGlobalEval( getAll( node, "script" ) ); - } - node.parentNode.removeChild( node ); - } - } - - return elem; -} - -jQuery.extend( { - htmlPrefilter: function( html ) { - return html; - }, - - clone: function( elem, dataAndEvents, deepDataAndEvents ) { - var i, l, srcElements, destElements, - clone = elem.cloneNode( true ), - inPage = isAttached( elem ); - - // Fix IE cloning issues - if ( !support.noCloneChecked && ( elem.nodeType === 1 || elem.nodeType === 11 ) && - !jQuery.isXMLDoc( elem ) ) { - - // We eschew Sizzle here for performance reasons: https://jsperf.com/getall-vs-sizzle/2 - destElements = getAll( clone ); - srcElements = getAll( elem ); - - for ( i = 0, l = srcElements.length; i < l; i++ ) { - fixInput( srcElements[ i ], destElements[ i ] ); - } - } - - // Copy the events from the original to the clone - if ( dataAndEvents ) { - if ( deepDataAndEvents ) { - srcElements = srcElements || getAll( elem ); - destElements = destElements || getAll( clone ); - - for ( i = 0, l = srcElements.length; i < l; i++ ) { - cloneCopyEvent( srcElements[ i ], destElements[ i ] ); - } - } else { - cloneCopyEvent( elem, clone ); - } - } - - // Preserve script evaluation history - destElements = getAll( clone, "script" ); - if ( destElements.length > 0 ) { - setGlobalEval( destElements, !inPage && getAll( elem, "script" ) ); - } - - // Return the cloned set - return clone; - }, - - cleanData: function( elems ) { - var data, elem, type, - special = jQuery.event.special, - i = 0; - - for ( ; ( elem = elems[ i ] ) !== undefined; i++ ) { - if ( acceptData( elem ) ) { - if ( ( data = elem[ dataPriv.expando ] ) ) { - if ( data.events ) { - for ( type in data.events ) { - if ( special[ type ] ) { - jQuery.event.remove( elem, type ); - - // This is a shortcut to avoid jQuery.event.remove's overhead - } else { - jQuery.removeEvent( elem, type, data.handle ); - } - } - } - - // Support: Chrome <=35 - 45+ - // Assign undefined instead of using delete, see Data#remove - elem[ dataPriv.expando ] = undefined; - } - if ( elem[ dataUser.expando ] ) { - - // Support: Chrome <=35 - 45+ - // Assign undefined instead of using delete, see Data#remove - elem[ dataUser.expando ] = undefined; - } - } - } - } -} ); - -jQuery.fn.extend( { - detach: function( selector ) { - return remove( this, selector, true ); - }, - - remove: function( selector ) { - return remove( this, selector ); - }, - - text: function( value ) { - return access( this, function( value ) { - return value === undefined ? - jQuery.text( this ) : - this.empty().each( function() { - if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) { - this.textContent = value; - } - } ); - }, null, value, arguments.length ); - }, - - append: function() { - return domManip( this, arguments, function( elem ) { - if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) { - var target = manipulationTarget( this, elem ); - target.appendChild( elem ); - } - } ); - }, - - prepend: function() { - return domManip( this, arguments, function( elem ) { - if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) { - var target = manipulationTarget( this, elem ); - target.insertBefore( elem, target.firstChild ); - } - } ); - }, - - before: function() { - return domManip( this, arguments, function( elem ) { - if ( this.parentNode ) { - this.parentNode.insertBefore( elem, this ); - } - } ); - }, - - after: function() { - return domManip( this, arguments, function( elem ) { - if ( this.parentNode ) { - this.parentNode.insertBefore( elem, this.nextSibling ); - } - } ); - }, - - empty: function() { - var elem, - i = 0; - - for ( ; ( elem = this[ i ] ) != null; i++ ) { - if ( elem.nodeType === 1 ) { - - // Prevent memory leaks - jQuery.cleanData( getAll( elem, false ) ); - - // Remove any remaining nodes - elem.textContent = ""; - } - } - - return this; - }, - - clone: function( dataAndEvents, deepDataAndEvents ) { - dataAndEvents = dataAndEvents == null ? false : dataAndEvents; - deepDataAndEvents = deepDataAndEvents == null ? dataAndEvents : deepDataAndEvents; - - return this.map( function() { - return jQuery.clone( this, dataAndEvents, deepDataAndEvents ); - } ); - }, - - html: function( value ) { - return access( this, function( value ) { - var elem = this[ 0 ] || {}, - i = 0, - l = this.length; - - if ( value === undefined && elem.nodeType === 1 ) { - return elem.innerHTML; - } - - // See if we can take a shortcut and just use innerHTML - if ( typeof value === "string" && !rnoInnerhtml.test( value ) && - !wrapMap[ ( rtagName.exec( value ) || [ "", "" ] )[ 1 ].toLowerCase() ] ) { - - value = jQuery.htmlPrefilter( value ); - - try { - for ( ; i < l; i++ ) { - elem = this[ i ] || {}; - - // Remove element nodes and prevent memory leaks - if ( elem.nodeType === 1 ) { - jQuery.cleanData( getAll( elem, false ) ); - elem.innerHTML = value; - } - } - - elem = 0; - - // If using innerHTML throws an exception, use the fallback method - } catch ( e ) {} - } - - if ( elem ) { - this.empty().append( value ); - } - }, null, value, arguments.length ); - }, - - replaceWith: function() { - var ignored = []; - - // Make the changes, replacing each non-ignored context element with the new content - return domManip( this, arguments, function( elem ) { - var parent = this.parentNode; - - if ( jQuery.inArray( this, ignored ) < 0 ) { - jQuery.cleanData( getAll( this ) ); - if ( parent ) { - parent.replaceChild( elem, this ); - } - } - - // Force callback invocation - }, ignored ); - } -} ); - -jQuery.each( { - appendTo: "append", - prependTo: "prepend", - insertBefore: "before", - insertAfter: "after", - replaceAll: "replaceWith" -}, function( name, original ) { - jQuery.fn[ name ] = function( selector ) { - var elems, - ret = [], - insert = jQuery( selector ), - last = insert.length - 1, - i = 0; - - for ( ; i <= last; i++ ) { - elems = i === last ? this : this.clone( true ); - jQuery( insert[ i ] )[ original ]( elems ); - - // Support: Android <=4.0 only, PhantomJS 1 only - // .get() because push.apply(_, arraylike) throws on ancient WebKit - push.apply( ret, elems.get() ); - } - - return this.pushStack( ret ); - }; -} ); -var rnumnonpx = new RegExp( "^(" + pnum + ")(?!px)[a-z%]+$", "i" ); - -var getStyles = function( elem ) { - - // Support: IE <=11 only, Firefox <=30 (#15098, #14150) - // IE throws on elements created in popups - // FF meanwhile throws on frame elements through "defaultView.getComputedStyle" - var view = elem.ownerDocument.defaultView; - - if ( !view || !view.opener ) { - view = window; - } - - return view.getComputedStyle( elem ); - }; - -var swap = function( elem, options, callback ) { - var ret, name, - old = {}; - - // Remember the old values, and insert the new ones - for ( name in options ) { - old[ name ] = elem.style[ name ]; - elem.style[ name ] = options[ name ]; - } - - ret = callback.call( elem ); - - // Revert the old values - for ( name in options ) { - elem.style[ name ] = old[ name ]; - } - - return ret; -}; - - -var rboxStyle = new RegExp( cssExpand.join( "|" ), "i" ); - - - -( function() { - - // Executing both pixelPosition & boxSizingReliable tests require only one layout - // so they're executed at the same time to save the second computation. - function computeStyleTests() { - - // This is a singleton, we need to execute it only once - if ( !div ) { - return; - } - - container.style.cssText = "position:absolute;left:-11111px;width:60px;" + - "margin-top:1px;padding:0;border:0"; - div.style.cssText = - "position:relative;display:block;box-sizing:border-box;overflow:scroll;" + - "margin:auto;border:1px;padding:1px;" + - "width:60%;top:1%"; - documentElement.appendChild( container ).appendChild( div ); - - var divStyle = window.getComputedStyle( div ); - pixelPositionVal = divStyle.top !== "1%"; - - // Support: Android 4.0 - 4.3 only, Firefox <=3 - 44 - reliableMarginLeftVal = roundPixelMeasures( divStyle.marginLeft ) === 12; - - // Support: Android 4.0 - 4.3 only, Safari <=9.1 - 10.1, iOS <=7.0 - 9.3 - // Some styles come back with percentage values, even though they shouldn't - div.style.right = "60%"; - pixelBoxStylesVal = roundPixelMeasures( divStyle.right ) === 36; - - // Support: IE 9 - 11 only - // Detect misreporting of content dimensions for box-sizing:border-box elements - boxSizingReliableVal = roundPixelMeasures( divStyle.width ) === 36; - - // Support: IE 9 only - // Detect overflow:scroll screwiness (gh-3699) - // Support: Chrome <=64 - // Don't get tricked when zoom affects offsetWidth (gh-4029) - div.style.position = "absolute"; - scrollboxSizeVal = roundPixelMeasures( div.offsetWidth / 3 ) === 12; - - documentElement.removeChild( container ); - - // Nullify the div so it wouldn't be stored in the memory and - // it will also be a sign that checks already performed - div = null; - } - - function roundPixelMeasures( measure ) { - return Math.round( parseFloat( measure ) ); - } - - var pixelPositionVal, boxSizingReliableVal, scrollboxSizeVal, pixelBoxStylesVal, - reliableTrDimensionsVal, reliableMarginLeftVal, - container = document.createElement( "div" ), - div = document.createElement( "div" ); - - // Finish early in limited (non-browser) environments - if ( !div.style ) { - return; - } - - // Support: IE <=9 - 11 only - // Style of cloned element affects source element cloned (#8908) - div.style.backgroundClip = "content-box"; - div.cloneNode( true ).style.backgroundClip = ""; - support.clearCloneStyle = div.style.backgroundClip === "content-box"; - - jQuery.extend( support, { - boxSizingReliable: function() { - computeStyleTests(); - return boxSizingReliableVal; - }, - pixelBoxStyles: function() { - computeStyleTests(); - return pixelBoxStylesVal; - }, - pixelPosition: function() { - computeStyleTests(); - return pixelPositionVal; - }, - reliableMarginLeft: function() { - computeStyleTests(); - return reliableMarginLeftVal; - }, - scrollboxSize: function() { - computeStyleTests(); - return scrollboxSizeVal; - }, - - // Support: IE 9 - 11+, Edge 15 - 18+ - // IE/Edge misreport `getComputedStyle` of table rows with width/height - // set in CSS while `offset*` properties report correct values. - // Behavior in IE 9 is more subtle than in newer versions & it passes - // some versions of this test; make sure not to make it pass there! - reliableTrDimensions: function() { - var table, tr, trChild, trStyle; - if ( reliableTrDimensionsVal == null ) { - table = document.createElement( "table" ); - tr = document.createElement( "tr" ); - trChild = document.createElement( "div" ); - - table.style.cssText = "position:absolute;left:-11111px"; - tr.style.height = "1px"; - trChild.style.height = "9px"; - - documentElement - .appendChild( table ) - .appendChild( tr ) - .appendChild( trChild ); - - trStyle = window.getComputedStyle( tr ); - reliableTrDimensionsVal = parseInt( trStyle.height ) > 3; - - documentElement.removeChild( table ); - } - return reliableTrDimensionsVal; - } - } ); -} )(); - - -function curCSS( elem, name, computed ) { - var width, minWidth, maxWidth, ret, - - // Support: Firefox 51+ - // Retrieving style before computed somehow - // fixes an issue with getting wrong values - // on detached elements - style = elem.style; - - computed = computed || getStyles( elem ); - - // getPropertyValue is needed for: - // .css('filter') (IE 9 only, #12537) - // .css('--customProperty) (#3144) - if ( computed ) { - ret = computed.getPropertyValue( name ) || computed[ name ]; - - if ( ret === "" && !isAttached( elem ) ) { - ret = jQuery.style( elem, name ); - } - - // A tribute to the "awesome hack by Dean Edwards" - // Android Browser returns percentage for some values, - // but width seems to be reliably pixels. - // This is against the CSSOM draft spec: - // https://drafts.csswg.org/cssom/#resolved-values - if ( !support.pixelBoxStyles() && rnumnonpx.test( ret ) && rboxStyle.test( name ) ) { - - // Remember the original values - width = style.width; - minWidth = style.minWidth; - maxWidth = style.maxWidth; - - // Put in the new values to get a computed value out - style.minWidth = style.maxWidth = style.width = ret; - ret = computed.width; - - // Revert the changed values - style.width = width; - style.minWidth = minWidth; - style.maxWidth = maxWidth; - } - } - - return ret !== undefined ? - - // Support: IE <=9 - 11 only - // IE returns zIndex value as an integer. - ret + "" : - ret; -} - - -function addGetHookIf( conditionFn, hookFn ) { - - // Define the hook, we'll check on the first run if it's really needed. - return { - get: function() { - if ( conditionFn() ) { - - // Hook not needed (or it's not possible to use it due - // to missing dependency), remove it. - delete this.get; - return; - } - - // Hook needed; redefine it so that the support test is not executed again. - return ( this.get = hookFn ).apply( this, arguments ); - } - }; -} - - -var cssPrefixes = [ "Webkit", "Moz", "ms" ], - emptyStyle = document.createElement( "div" ).style, - vendorProps = {}; - -// Return a vendor-prefixed property or undefined -function vendorPropName( name ) { - - // Check for vendor prefixed names - var capName = name[ 0 ].toUpperCase() + name.slice( 1 ), - i = cssPrefixes.length; - - while ( i-- ) { - name = cssPrefixes[ i ] + capName; - if ( name in emptyStyle ) { - return name; - } - } -} - -// Return a potentially-mapped jQuery.cssProps or vendor prefixed property -function finalPropName( name ) { - var final = jQuery.cssProps[ name ] || vendorProps[ name ]; - - if ( final ) { - return final; - } - if ( name in emptyStyle ) { - return name; - } - return vendorProps[ name ] = vendorPropName( name ) || name; -} - - -var - - // Swappable if display is none or starts with table - // except "table", "table-cell", or "table-caption" - // See here for display values: https://developer.mozilla.org/en-US/docs/CSS/display - rdisplayswap = /^(none|table(?!-c[ea]).+)/, - rcustomProp = /^--/, - cssShow = { position: "absolute", visibility: "hidden", display: "block" }, - cssNormalTransform = { - letterSpacing: "0", - fontWeight: "400" - }; - -function setPositiveNumber( _elem, value, subtract ) { - - // Any relative (+/-) values have already been - // normalized at this point - var matches = rcssNum.exec( value ); - return matches ? - - // Guard against undefined "subtract", e.g., when used as in cssHooks - Math.max( 0, matches[ 2 ] - ( subtract || 0 ) ) + ( matches[ 3 ] || "px" ) : - value; -} - -function boxModelAdjustment( elem, dimension, box, isBorderBox, styles, computedVal ) { - var i = dimension === "width" ? 1 : 0, - extra = 0, - delta = 0; - - // Adjustment may not be necessary - if ( box === ( isBorderBox ? "border" : "content" ) ) { - return 0; - } - - for ( ; i < 4; i += 2 ) { - - // Both box models exclude margin - if ( box === "margin" ) { - delta += jQuery.css( elem, box + cssExpand[ i ], true, styles ); - } - - // If we get here with a content-box, we're seeking "padding" or "border" or "margin" - if ( !isBorderBox ) { - - // Add padding - delta += jQuery.css( elem, "padding" + cssExpand[ i ], true, styles ); - - // For "border" or "margin", add border - if ( box !== "padding" ) { - delta += jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles ); - - // But still keep track of it otherwise - } else { - extra += jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles ); - } - - // If we get here with a border-box (content + padding + border), we're seeking "content" or - // "padding" or "margin" - } else { - - // For "content", subtract padding - if ( box === "content" ) { - delta -= jQuery.css( elem, "padding" + cssExpand[ i ], true, styles ); - } - - // For "content" or "padding", subtract border - if ( box !== "margin" ) { - delta -= jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles ); - } - } - } - - // Account for positive content-box scroll gutter when requested by providing computedVal - if ( !isBorderBox && computedVal >= 0 ) { - - // offsetWidth/offsetHeight is a rounded sum of content, padding, scroll gutter, and border - // Assuming integer scroll gutter, subtract the rest and round down - delta += Math.max( 0, Math.ceil( - elem[ "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ) ] - - computedVal - - delta - - extra - - 0.5 - - // If offsetWidth/offsetHeight is unknown, then we can't determine content-box scroll gutter - // Use an explicit zero to avoid NaN (gh-3964) - ) ) || 0; - } - - return delta; -} - -function getWidthOrHeight( elem, dimension, extra ) { - - // Start with computed style - var styles = getStyles( elem ), - - // To avoid forcing a reflow, only fetch boxSizing if we need it (gh-4322). - // Fake content-box until we know it's needed to know the true value. - boxSizingNeeded = !support.boxSizingReliable() || extra, - isBorderBox = boxSizingNeeded && - jQuery.css( elem, "boxSizing", false, styles ) === "border-box", - valueIsBorderBox = isBorderBox, - - val = curCSS( elem, dimension, styles ), - offsetProp = "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ); - - // Support: Firefox <=54 - // Return a confounding non-pixel value or feign ignorance, as appropriate. - if ( rnumnonpx.test( val ) ) { - if ( !extra ) { - return val; - } - val = "auto"; - } - - - // Support: IE 9 - 11 only - // Use offsetWidth/offsetHeight for when box sizing is unreliable. - // In those cases, the computed value can be trusted to be border-box. - if ( ( !support.boxSizingReliable() && isBorderBox || - - // Support: IE 10 - 11+, Edge 15 - 18+ - // IE/Edge misreport `getComputedStyle` of table rows with width/height - // set in CSS while `offset*` properties report correct values. - // Interestingly, in some cases IE 9 doesn't suffer from this issue. - !support.reliableTrDimensions() && nodeName( elem, "tr" ) || - - // Fall back to offsetWidth/offsetHeight when value is "auto" - // This happens for inline elements with no explicit setting (gh-3571) - val === "auto" || - - // Support: Android <=4.1 - 4.3 only - // Also use offsetWidth/offsetHeight for misreported inline dimensions (gh-3602) - !parseFloat( val ) && jQuery.css( elem, "display", false, styles ) === "inline" ) && - - // Make sure the element is visible & connected - elem.getClientRects().length ) { - - isBorderBox = jQuery.css( elem, "boxSizing", false, styles ) === "border-box"; - - // Where available, offsetWidth/offsetHeight approximate border box dimensions. - // Where not available (e.g., SVG), assume unreliable box-sizing and interpret the - // retrieved value as a content box dimension. - valueIsBorderBox = offsetProp in elem; - if ( valueIsBorderBox ) { - val = elem[ offsetProp ]; - } - } - - // Normalize "" and auto - val = parseFloat( val ) || 0; - - // Adjust for the element's box model - return ( val + - boxModelAdjustment( - elem, - dimension, - extra || ( isBorderBox ? "border" : "content" ), - valueIsBorderBox, - styles, - - // Provide the current computed size to request scroll gutter calculation (gh-3589) - val - ) - ) + "px"; -} - -jQuery.extend( { - - // Add in style property hooks for overriding the default - // behavior of getting and setting a style property - cssHooks: { - opacity: { - get: function( elem, computed ) { - if ( computed ) { - - // We should always get a number back from opacity - var ret = curCSS( elem, "opacity" ); - return ret === "" ? "1" : ret; - } - } - } - }, - - // Don't automatically add "px" to these possibly-unitless properties - cssNumber: { - "animationIterationCount": true, - "columnCount": true, - "fillOpacity": true, - "flexGrow": true, - "flexShrink": true, - "fontWeight": true, - "gridArea": true, - "gridColumn": true, - "gridColumnEnd": true, - "gridColumnStart": true, - "gridRow": true, - "gridRowEnd": true, - "gridRowStart": true, - "lineHeight": true, - "opacity": true, - "order": true, - "orphans": true, - "widows": true, - "zIndex": true, - "zoom": true - }, - - // Add in properties whose names you wish to fix before - // setting or getting the value - cssProps: {}, - - // Get and set the style property on a DOM Node - style: function( elem, name, value, extra ) { - - // Don't set styles on text and comment nodes - if ( !elem || elem.nodeType === 3 || elem.nodeType === 8 || !elem.style ) { - return; - } - - // Make sure that we're working with the right name - var ret, type, hooks, - origName = camelCase( name ), - isCustomProp = rcustomProp.test( name ), - style = elem.style; - - // Make sure that we're working with the right name. We don't - // want to query the value if it is a CSS custom property - // since they are user-defined. - if ( !isCustomProp ) { - name = finalPropName( origName ); - } - - // Gets hook for the prefixed version, then unprefixed version - hooks = jQuery.cssHooks[ name ] || jQuery.cssHooks[ origName ]; - - // Check if we're setting a value - if ( value !== undefined ) { - type = typeof value; - - // Convert "+=" or "-=" to relative numbers (#7345) - if ( type === "string" && ( ret = rcssNum.exec( value ) ) && ret[ 1 ] ) { - value = adjustCSS( elem, name, ret ); - - // Fixes bug #9237 - type = "number"; - } - - // Make sure that null and NaN values aren't set (#7116) - if ( value == null || value !== value ) { - return; - } - - // If a number was passed in, add the unit (except for certain CSS properties) - // The isCustomProp check can be removed in jQuery 4.0 when we only auto-append - // "px" to a few hardcoded values. - if ( type === "number" && !isCustomProp ) { - value += ret && ret[ 3 ] || ( jQuery.cssNumber[ origName ] ? "" : "px" ); - } - - // background-* props affect original clone's values - if ( !support.clearCloneStyle && value === "" && name.indexOf( "background" ) === 0 ) { - style[ name ] = "inherit"; - } - - // If a hook was provided, use that value, otherwise just set the specified value - if ( !hooks || !( "set" in hooks ) || - ( value = hooks.set( elem, value, extra ) ) !== undefined ) { - - if ( isCustomProp ) { - style.setProperty( name, value ); - } else { - style[ name ] = value; - } - } - - } else { - - // If a hook was provided get the non-computed value from there - if ( hooks && "get" in hooks && - ( ret = hooks.get( elem, false, extra ) ) !== undefined ) { - - return ret; - } - - // Otherwise just get the value from the style object - return style[ name ]; - } - }, - - css: function( elem, name, extra, styles ) { - var val, num, hooks, - origName = camelCase( name ), - isCustomProp = rcustomProp.test( name ); - - // Make sure that we're working with the right name. We don't - // want to modify the value if it is a CSS custom property - // since they are user-defined. - if ( !isCustomProp ) { - name = finalPropName( origName ); - } - - // Try prefixed name followed by the unprefixed name - hooks = jQuery.cssHooks[ name ] || jQuery.cssHooks[ origName ]; - - // If a hook was provided get the computed value from there - if ( hooks && "get" in hooks ) { - val = hooks.get( elem, true, extra ); - } - - // Otherwise, if a way to get the computed value exists, use that - if ( val === undefined ) { - val = curCSS( elem, name, styles ); - } - - // Convert "normal" to computed value - if ( val === "normal" && name in cssNormalTransform ) { - val = cssNormalTransform[ name ]; - } - - // Make numeric if forced or a qualifier was provided and val looks numeric - if ( extra === "" || extra ) { - num = parseFloat( val ); - return extra === true || isFinite( num ) ? num || 0 : val; - } - - return val; - } -} ); - -jQuery.each( [ "height", "width" ], function( _i, dimension ) { - jQuery.cssHooks[ dimension ] = { - get: function( elem, computed, extra ) { - if ( computed ) { - - // Certain elements can have dimension info if we invisibly show them - // but it must have a current display style that would benefit - return rdisplayswap.test( jQuery.css( elem, "display" ) ) && - - // Support: Safari 8+ - // Table columns in Safari have non-zero offsetWidth & zero - // getBoundingClientRect().width unless display is changed. - // Support: IE <=11 only - // Running getBoundingClientRect on a disconnected node - // in IE throws an error. - ( !elem.getClientRects().length || !elem.getBoundingClientRect().width ) ? - swap( elem, cssShow, function() { - return getWidthOrHeight( elem, dimension, extra ); - } ) : - getWidthOrHeight( elem, dimension, extra ); - } - }, - - set: function( elem, value, extra ) { - var matches, - styles = getStyles( elem ), - - // Only read styles.position if the test has a chance to fail - // to avoid forcing a reflow. - scrollboxSizeBuggy = !support.scrollboxSize() && - styles.position === "absolute", - - // To avoid forcing a reflow, only fetch boxSizing if we need it (gh-3991) - boxSizingNeeded = scrollboxSizeBuggy || extra, - isBorderBox = boxSizingNeeded && - jQuery.css( elem, "boxSizing", false, styles ) === "border-box", - subtract = extra ? - boxModelAdjustment( - elem, - dimension, - extra, - isBorderBox, - styles - ) : - 0; - - // Account for unreliable border-box dimensions by comparing offset* to computed and - // faking a content-box to get border and padding (gh-3699) - if ( isBorderBox && scrollboxSizeBuggy ) { - subtract -= Math.ceil( - elem[ "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ) ] - - parseFloat( styles[ dimension ] ) - - boxModelAdjustment( elem, dimension, "border", false, styles ) - - 0.5 - ); - } - - // Convert to pixels if value adjustment is needed - if ( subtract && ( matches = rcssNum.exec( value ) ) && - ( matches[ 3 ] || "px" ) !== "px" ) { - - elem.style[ dimension ] = value; - value = jQuery.css( elem, dimension ); - } - - return setPositiveNumber( elem, value, subtract ); - } - }; -} ); - -jQuery.cssHooks.marginLeft = addGetHookIf( support.reliableMarginLeft, - function( elem, computed ) { - if ( computed ) { - return ( parseFloat( curCSS( elem, "marginLeft" ) ) || - elem.getBoundingClientRect().left - - swap( elem, { marginLeft: 0 }, function() { - return elem.getBoundingClientRect().left; - } ) - ) + "px"; - } - } -); - -// These hooks are used by animate to expand properties -jQuery.each( { - margin: "", - padding: "", - border: "Width" -}, function( prefix, suffix ) { - jQuery.cssHooks[ prefix + suffix ] = { - expand: function( value ) { - var i = 0, - expanded = {}, - - // Assumes a single number if not a string - parts = typeof value === "string" ? value.split( " " ) : [ value ]; - - for ( ; i < 4; i++ ) { - expanded[ prefix + cssExpand[ i ] + suffix ] = - parts[ i ] || parts[ i - 2 ] || parts[ 0 ]; - } - - return expanded; - } - }; - - if ( prefix !== "margin" ) { - jQuery.cssHooks[ prefix + suffix ].set = setPositiveNumber; - } -} ); - -jQuery.fn.extend( { - css: function( name, value ) { - return access( this, function( elem, name, value ) { - var styles, len, - map = {}, - i = 0; - - if ( Array.isArray( name ) ) { - styles = getStyles( elem ); - len = name.length; - - for ( ; i < len; i++ ) { - map[ name[ i ] ] = jQuery.css( elem, name[ i ], false, styles ); - } - - return map; - } - - return value !== undefined ? - jQuery.style( elem, name, value ) : - jQuery.css( elem, name ); - }, name, value, arguments.length > 1 ); - } -} ); - - -function Tween( elem, options, prop, end, easing ) { - return new Tween.prototype.init( elem, options, prop, end, easing ); -} -jQuery.Tween = Tween; - -Tween.prototype = { - constructor: Tween, - init: function( elem, options, prop, end, easing, unit ) { - this.elem = elem; - this.prop = prop; - this.easing = easing || jQuery.easing._default; - this.options = options; - this.start = this.now = this.cur(); - this.end = end; - this.unit = unit || ( jQuery.cssNumber[ prop ] ? "" : "px" ); - }, - cur: function() { - var hooks = Tween.propHooks[ this.prop ]; - - return hooks && hooks.get ? - hooks.get( this ) : - Tween.propHooks._default.get( this ); - }, - run: function( percent ) { - var eased, - hooks = Tween.propHooks[ this.prop ]; - - if ( this.options.duration ) { - this.pos = eased = jQuery.easing[ this.easing ]( - percent, this.options.duration * percent, 0, 1, this.options.duration - ); - } else { - this.pos = eased = percent; - } - this.now = ( this.end - this.start ) * eased + this.start; - - if ( this.options.step ) { - this.options.step.call( this.elem, this.now, this ); - } - - if ( hooks && hooks.set ) { - hooks.set( this ); - } else { - Tween.propHooks._default.set( this ); - } - return this; - } -}; - -Tween.prototype.init.prototype = Tween.prototype; - -Tween.propHooks = { - _default: { - get: function( tween ) { - var result; - - // Use a property on the element directly when it is not a DOM element, - // or when there is no matching style property that exists. - if ( tween.elem.nodeType !== 1 || - tween.elem[ tween.prop ] != null && tween.elem.style[ tween.prop ] == null ) { - return tween.elem[ tween.prop ]; - } - - // Passing an empty string as a 3rd parameter to .css will automatically - // attempt a parseFloat and fallback to a string if the parse fails. - // Simple values such as "10px" are parsed to Float; - // complex values such as "rotate(1rad)" are returned as-is. - result = jQuery.css( tween.elem, tween.prop, "" ); - - // Empty strings, null, undefined and "auto" are converted to 0. - return !result || result === "auto" ? 0 : result; - }, - set: function( tween ) { - - // Use step hook for back compat. - // Use cssHook if its there. - // Use .style if available and use plain properties where available. - if ( jQuery.fx.step[ tween.prop ] ) { - jQuery.fx.step[ tween.prop ]( tween ); - } else if ( tween.elem.nodeType === 1 && ( - jQuery.cssHooks[ tween.prop ] || - tween.elem.style[ finalPropName( tween.prop ) ] != null ) ) { - jQuery.style( tween.elem, tween.prop, tween.now + tween.unit ); - } else { - tween.elem[ tween.prop ] = tween.now; - } - } - } -}; - -// Support: IE <=9 only -// Panic based approach to setting things on disconnected nodes -Tween.propHooks.scrollTop = Tween.propHooks.scrollLeft = { - set: function( tween ) { - if ( tween.elem.nodeType && tween.elem.parentNode ) { - tween.elem[ tween.prop ] = tween.now; - } - } -}; - -jQuery.easing = { - linear: function( p ) { - return p; - }, - swing: function( p ) { - return 0.5 - Math.cos( p * Math.PI ) / 2; - }, - _default: "swing" -}; - -jQuery.fx = Tween.prototype.init; - -// Back compat <1.8 extension point -jQuery.fx.step = {}; - - - - -var - fxNow, inProgress, - rfxtypes = /^(?:toggle|show|hide)$/, - rrun = /queueHooks$/; - -function schedule() { - if ( inProgress ) { - if ( document.hidden === false && window.requestAnimationFrame ) { - window.requestAnimationFrame( schedule ); - } else { - window.setTimeout( schedule, jQuery.fx.interval ); - } - - jQuery.fx.tick(); - } -} - -// Animations created synchronously will run synchronously -function createFxNow() { - window.setTimeout( function() { - fxNow = undefined; - } ); - return ( fxNow = Date.now() ); -} - -// Generate parameters to create a standard animation -function genFx( type, includeWidth ) { - var which, - i = 0, - attrs = { height: type }; - - // If we include width, step value is 1 to do all cssExpand values, - // otherwise step value is 2 to skip over Left and Right - includeWidth = includeWidth ? 1 : 0; - for ( ; i < 4; i += 2 - includeWidth ) { - which = cssExpand[ i ]; - attrs[ "margin" + which ] = attrs[ "padding" + which ] = type; - } - - if ( includeWidth ) { - attrs.opacity = attrs.width = type; - } - - return attrs; -} - -function createTween( value, prop, animation ) { - var tween, - collection = ( Animation.tweeners[ prop ] || [] ).concat( Animation.tweeners[ "*" ] ), - index = 0, - length = collection.length; - for ( ; index < length; index++ ) { - if ( ( tween = collection[ index ].call( animation, prop, value ) ) ) { - - // We're done with this property - return tween; - } - } -} - -function defaultPrefilter( elem, props, opts ) { - var prop, value, toggle, hooks, oldfire, propTween, restoreDisplay, display, - isBox = "width" in props || "height" in props, - anim = this, - orig = {}, - style = elem.style, - hidden = elem.nodeType && isHiddenWithinTree( elem ), - dataShow = dataPriv.get( elem, "fxshow" ); - - // Queue-skipping animations hijack the fx hooks - if ( !opts.queue ) { - hooks = jQuery._queueHooks( elem, "fx" ); - if ( hooks.unqueued == null ) { - hooks.unqueued = 0; - oldfire = hooks.empty.fire; - hooks.empty.fire = function() { - if ( !hooks.unqueued ) { - oldfire(); - } - }; - } - hooks.unqueued++; - - anim.always( function() { - - // Ensure the complete handler is called before this completes - anim.always( function() { - hooks.unqueued--; - if ( !jQuery.queue( elem, "fx" ).length ) { - hooks.empty.fire(); - } - } ); - } ); - } - - // Detect show/hide animations - for ( prop in props ) { - value = props[ prop ]; - if ( rfxtypes.test( value ) ) { - delete props[ prop ]; - toggle = toggle || value === "toggle"; - if ( value === ( hidden ? "hide" : "show" ) ) { - - // Pretend to be hidden if this is a "show" and - // there is still data from a stopped show/hide - if ( value === "show" && dataShow && dataShow[ prop ] !== undefined ) { - hidden = true; - - // Ignore all other no-op show/hide data - } else { - continue; - } - } - orig[ prop ] = dataShow && dataShow[ prop ] || jQuery.style( elem, prop ); - } - } - - // Bail out if this is a no-op like .hide().hide() - propTween = !jQuery.isEmptyObject( props ); - if ( !propTween && jQuery.isEmptyObject( orig ) ) { - return; - } - - // Restrict "overflow" and "display" styles during box animations - if ( isBox && elem.nodeType === 1 ) { - - // Support: IE <=9 - 11, Edge 12 - 15 - // Record all 3 overflow attributes because IE does not infer the shorthand - // from identically-valued overflowX and overflowY and Edge just mirrors - // the overflowX value there. - opts.overflow = [ style.overflow, style.overflowX, style.overflowY ]; - - // Identify a display type, preferring old show/hide data over the CSS cascade - restoreDisplay = dataShow && dataShow.display; - if ( restoreDisplay == null ) { - restoreDisplay = dataPriv.get( elem, "display" ); - } - display = jQuery.css( elem, "display" ); - if ( display === "none" ) { - if ( restoreDisplay ) { - display = restoreDisplay; - } else { - - // Get nonempty value(s) by temporarily forcing visibility - showHide( [ elem ], true ); - restoreDisplay = elem.style.display || restoreDisplay; - display = jQuery.css( elem, "display" ); - showHide( [ elem ] ); - } - } - - // Animate inline elements as inline-block - if ( display === "inline" || display === "inline-block" && restoreDisplay != null ) { - if ( jQuery.css( elem, "float" ) === "none" ) { - - // Restore the original display value at the end of pure show/hide animations - if ( !propTween ) { - anim.done( function() { - style.display = restoreDisplay; - } ); - if ( restoreDisplay == null ) { - display = style.display; - restoreDisplay = display === "none" ? "" : display; - } - } - style.display = "inline-block"; - } - } - } - - if ( opts.overflow ) { - style.overflow = "hidden"; - anim.always( function() { - style.overflow = opts.overflow[ 0 ]; - style.overflowX = opts.overflow[ 1 ]; - style.overflowY = opts.overflow[ 2 ]; - } ); - } - - // Implement show/hide animations - propTween = false; - for ( prop in orig ) { - - // General show/hide setup for this element animation - if ( !propTween ) { - if ( dataShow ) { - if ( "hidden" in dataShow ) { - hidden = dataShow.hidden; - } - } else { - dataShow = dataPriv.access( elem, "fxshow", { display: restoreDisplay } ); - } - - // Store hidden/visible for toggle so `.stop().toggle()` "reverses" - if ( toggle ) { - dataShow.hidden = !hidden; - } - - // Show elements before animating them - if ( hidden ) { - showHide( [ elem ], true ); - } - - /* eslint-disable no-loop-func */ - - anim.done( function() { - - /* eslint-enable no-loop-func */ - - // The final step of a "hide" animation is actually hiding the element - if ( !hidden ) { - showHide( [ elem ] ); - } - dataPriv.remove( elem, "fxshow" ); - for ( prop in orig ) { - jQuery.style( elem, prop, orig[ prop ] ); - } - } ); - } - - // Per-property setup - propTween = createTween( hidden ? dataShow[ prop ] : 0, prop, anim ); - if ( !( prop in dataShow ) ) { - dataShow[ prop ] = propTween.start; - if ( hidden ) { - propTween.end = propTween.start; - propTween.start = 0; - } - } - } -} - -function propFilter( props, specialEasing ) { - var index, name, easing, value, hooks; - - // camelCase, specialEasing and expand cssHook pass - for ( index in props ) { - name = camelCase( index ); - easing = specialEasing[ name ]; - value = props[ index ]; - if ( Array.isArray( value ) ) { - easing = value[ 1 ]; - value = props[ index ] = value[ 0 ]; - } - - if ( index !== name ) { - props[ name ] = value; - delete props[ index ]; - } - - hooks = jQuery.cssHooks[ name ]; - if ( hooks && "expand" in hooks ) { - value = hooks.expand( value ); - delete props[ name ]; - - // Not quite $.extend, this won't overwrite existing keys. - // Reusing 'index' because we have the correct "name" - for ( index in value ) { - if ( !( index in props ) ) { - props[ index ] = value[ index ]; - specialEasing[ index ] = easing; - } - } - } else { - specialEasing[ name ] = easing; - } - } -} - -function Animation( elem, properties, options ) { - var result, - stopped, - index = 0, - length = Animation.prefilters.length, - deferred = jQuery.Deferred().always( function() { - - // Don't match elem in the :animated selector - delete tick.elem; - } ), - tick = function() { - if ( stopped ) { - return false; - } - var currentTime = fxNow || createFxNow(), - remaining = Math.max( 0, animation.startTime + animation.duration - currentTime ), - - // Support: Android 2.3 only - // Archaic crash bug won't allow us to use `1 - ( 0.5 || 0 )` (#12497) - temp = remaining / animation.duration || 0, - percent = 1 - temp, - index = 0, - length = animation.tweens.length; - - for ( ; index < length; index++ ) { - animation.tweens[ index ].run( percent ); - } - - deferred.notifyWith( elem, [ animation, percent, remaining ] ); - - // If there's more to do, yield - if ( percent < 1 && length ) { - return remaining; - } - - // If this was an empty animation, synthesize a final progress notification - if ( !length ) { - deferred.notifyWith( elem, [ animation, 1, 0 ] ); - } - - // Resolve the animation and report its conclusion - deferred.resolveWith( elem, [ animation ] ); - return false; - }, - animation = deferred.promise( { - elem: elem, - props: jQuery.extend( {}, properties ), - opts: jQuery.extend( true, { - specialEasing: {}, - easing: jQuery.easing._default - }, options ), - originalProperties: properties, - originalOptions: options, - startTime: fxNow || createFxNow(), - duration: options.duration, - tweens: [], - createTween: function( prop, end ) { - var tween = jQuery.Tween( elem, animation.opts, prop, end, - animation.opts.specialEasing[ prop ] || animation.opts.easing ); - animation.tweens.push( tween ); - return tween; - }, - stop: function( gotoEnd ) { - var index = 0, - - // If we are going to the end, we want to run all the tweens - // otherwise we skip this part - length = gotoEnd ? animation.tweens.length : 0; - if ( stopped ) { - return this; - } - stopped = true; - for ( ; index < length; index++ ) { - animation.tweens[ index ].run( 1 ); - } - - // Resolve when we played the last frame; otherwise, reject - if ( gotoEnd ) { - deferred.notifyWith( elem, [ animation, 1, 0 ] ); - deferred.resolveWith( elem, [ animation, gotoEnd ] ); - } else { - deferred.rejectWith( elem, [ animation, gotoEnd ] ); - } - return this; - } - } ), - props = animation.props; - - propFilter( props, animation.opts.specialEasing ); - - for ( ; index < length; index++ ) { - result = Animation.prefilters[ index ].call( animation, elem, props, animation.opts ); - if ( result ) { - if ( isFunction( result.stop ) ) { - jQuery._queueHooks( animation.elem, animation.opts.queue ).stop = - result.stop.bind( result ); - } - return result; - } - } - - jQuery.map( props, createTween, animation ); - - if ( isFunction( animation.opts.start ) ) { - animation.opts.start.call( elem, animation ); - } - - // Attach callbacks from options - animation - .progress( animation.opts.progress ) - .done( animation.opts.done, animation.opts.complete ) - .fail( animation.opts.fail ) - .always( animation.opts.always ); - - jQuery.fx.timer( - jQuery.extend( tick, { - elem: elem, - anim: animation, - queue: animation.opts.queue - } ) - ); - - return animation; -} - -jQuery.Animation = jQuery.extend( Animation, { - - tweeners: { - "*": [ function( prop, value ) { - var tween = this.createTween( prop, value ); - adjustCSS( tween.elem, prop, rcssNum.exec( value ), tween ); - return tween; - } ] - }, - - tweener: function( props, callback ) { - if ( isFunction( props ) ) { - callback = props; - props = [ "*" ]; - } else { - props = props.match( rnothtmlwhite ); - } - - var prop, - index = 0, - length = props.length; - - for ( ; index < length; index++ ) { - prop = props[ index ]; - Animation.tweeners[ prop ] = Animation.tweeners[ prop ] || []; - Animation.tweeners[ prop ].unshift( callback ); - } - }, - - prefilters: [ defaultPrefilter ], - - prefilter: function( callback, prepend ) { - if ( prepend ) { - Animation.prefilters.unshift( callback ); - } else { - Animation.prefilters.push( callback ); - } - } -} ); - -jQuery.speed = function( speed, easing, fn ) { - var opt = speed && typeof speed === "object" ? jQuery.extend( {}, speed ) : { - complete: fn || !fn && easing || - isFunction( speed ) && speed, - duration: speed, - easing: fn && easing || easing && !isFunction( easing ) && easing - }; - - // Go to the end state if fx are off - if ( jQuery.fx.off ) { - opt.duration = 0; - - } else { - if ( typeof opt.duration !== "number" ) { - if ( opt.duration in jQuery.fx.speeds ) { - opt.duration = jQuery.fx.speeds[ opt.duration ]; - - } else { - opt.duration = jQuery.fx.speeds._default; - } - } - } - - // Normalize opt.queue - true/undefined/null -> "fx" - if ( opt.queue == null || opt.queue === true ) { - opt.queue = "fx"; - } - - // Queueing - opt.old = opt.complete; - - opt.complete = function() { - if ( isFunction( opt.old ) ) { - opt.old.call( this ); - } - - if ( opt.queue ) { - jQuery.dequeue( this, opt.queue ); - } - }; - - return opt; -}; - -jQuery.fn.extend( { - fadeTo: function( speed, to, easing, callback ) { - - // Show any hidden elements after setting opacity to 0 - return this.filter( isHiddenWithinTree ).css( "opacity", 0 ).show() - - // Animate to the value specified - .end().animate( { opacity: to }, speed, easing, callback ); - }, - animate: function( prop, speed, easing, callback ) { - var empty = jQuery.isEmptyObject( prop ), - optall = jQuery.speed( speed, easing, callback ), - doAnimation = function() { - - // Operate on a copy of prop so per-property easing won't be lost - var anim = Animation( this, jQuery.extend( {}, prop ), optall ); - - // Empty animations, or finishing resolves immediately - if ( empty || dataPriv.get( this, "finish" ) ) { - anim.stop( true ); - } - }; - doAnimation.finish = doAnimation; - - return empty || optall.queue === false ? - this.each( doAnimation ) : - this.queue( optall.queue, doAnimation ); - }, - stop: function( type, clearQueue, gotoEnd ) { - var stopQueue = function( hooks ) { - var stop = hooks.stop; - delete hooks.stop; - stop( gotoEnd ); - }; - - if ( typeof type !== "string" ) { - gotoEnd = clearQueue; - clearQueue = type; - type = undefined; - } - if ( clearQueue ) { - this.queue( type || "fx", [] ); - } - - return this.each( function() { - var dequeue = true, - index = type != null && type + "queueHooks", - timers = jQuery.timers, - data = dataPriv.get( this ); - - if ( index ) { - if ( data[ index ] && data[ index ].stop ) { - stopQueue( data[ index ] ); - } - } else { - for ( index in data ) { - if ( data[ index ] && data[ index ].stop && rrun.test( index ) ) { - stopQueue( data[ index ] ); - } - } - } - - for ( index = timers.length; index--; ) { - if ( timers[ index ].elem === this && - ( type == null || timers[ index ].queue === type ) ) { - - timers[ index ].anim.stop( gotoEnd ); - dequeue = false; - timers.splice( index, 1 ); - } - } - - // Start the next in the queue if the last step wasn't forced. - // Timers currently will call their complete callbacks, which - // will dequeue but only if they were gotoEnd. - if ( dequeue || !gotoEnd ) { - jQuery.dequeue( this, type ); - } - } ); - }, - finish: function( type ) { - if ( type !== false ) { - type = type || "fx"; - } - return this.each( function() { - var index, - data = dataPriv.get( this ), - queue = data[ type + "queue" ], - hooks = data[ type + "queueHooks" ], - timers = jQuery.timers, - length = queue ? queue.length : 0; - - // Enable finishing flag on private data - data.finish = true; - - // Empty the queue first - jQuery.queue( this, type, [] ); - - if ( hooks && hooks.stop ) { - hooks.stop.call( this, true ); - } - - // Look for any active animations, and finish them - for ( index = timers.length; index--; ) { - if ( timers[ index ].elem === this && timers[ index ].queue === type ) { - timers[ index ].anim.stop( true ); - timers.splice( index, 1 ); - } - } - - // Look for any animations in the old queue and finish them - for ( index = 0; index < length; index++ ) { - if ( queue[ index ] && queue[ index ].finish ) { - queue[ index ].finish.call( this ); - } - } - - // Turn off finishing flag - delete data.finish; - } ); - } -} ); - -jQuery.each( [ "toggle", "show", "hide" ], function( _i, name ) { - var cssFn = jQuery.fn[ name ]; - jQuery.fn[ name ] = function( speed, easing, callback ) { - return speed == null || typeof speed === "boolean" ? - cssFn.apply( this, arguments ) : - this.animate( genFx( name, true ), speed, easing, callback ); - }; -} ); - -// Generate shortcuts for custom animations -jQuery.each( { - slideDown: genFx( "show" ), - slideUp: genFx( "hide" ), - slideToggle: genFx( "toggle" ), - fadeIn: { opacity: "show" }, - fadeOut: { opacity: "hide" }, - fadeToggle: { opacity: "toggle" } -}, function( name, props ) { - jQuery.fn[ name ] = function( speed, easing, callback ) { - return this.animate( props, speed, easing, callback ); - }; -} ); - -jQuery.timers = []; -jQuery.fx.tick = function() { - var timer, - i = 0, - timers = jQuery.timers; - - fxNow = Date.now(); - - for ( ; i < timers.length; i++ ) { - timer = timers[ i ]; - - // Run the timer and safely remove it when done (allowing for external removal) - if ( !timer() && timers[ i ] === timer ) { - timers.splice( i--, 1 ); - } - } - - if ( !timers.length ) { - jQuery.fx.stop(); - } - fxNow = undefined; -}; - -jQuery.fx.timer = function( timer ) { - jQuery.timers.push( timer ); - jQuery.fx.start(); -}; - -jQuery.fx.interval = 13; -jQuery.fx.start = function() { - if ( inProgress ) { - return; - } - - inProgress = true; - schedule(); -}; - -jQuery.fx.stop = function() { - inProgress = null; -}; - -jQuery.fx.speeds = { - slow: 600, - fast: 200, - - // Default speed - _default: 400 -}; - - -// Based off of the plugin by Clint Helfers, with permission. -// https://web.archive.org/web/20100324014747/http://blindsignals.com/index.php/2009/07/jquery-delay/ -jQuery.fn.delay = function( time, type ) { - time = jQuery.fx ? jQuery.fx.speeds[ time ] || time : time; - type = type || "fx"; - - return this.queue( type, function( next, hooks ) { - var timeout = window.setTimeout( next, time ); - hooks.stop = function() { - window.clearTimeout( timeout ); - }; - } ); -}; - - -( function() { - var input = document.createElement( "input" ), - select = document.createElement( "select" ), - opt = select.appendChild( document.createElement( "option" ) ); - - input.type = "checkbox"; - - // Support: Android <=4.3 only - // Default value for a checkbox should be "on" - support.checkOn = input.value !== ""; - - // Support: IE <=11 only - // Must access selectedIndex to make default options select - support.optSelected = opt.selected; - - // Support: IE <=11 only - // An input loses its value after becoming a radio - input = document.createElement( "input" ); - input.value = "t"; - input.type = "radio"; - support.radioValue = input.value === "t"; -} )(); - - -var boolHook, - attrHandle = jQuery.expr.attrHandle; - -jQuery.fn.extend( { - attr: function( name, value ) { - return access( this, jQuery.attr, name, value, arguments.length > 1 ); - }, - - removeAttr: function( name ) { - return this.each( function() { - jQuery.removeAttr( this, name ); - } ); - } -} ); - -jQuery.extend( { - attr: function( elem, name, value ) { - var ret, hooks, - nType = elem.nodeType; - - // Don't get/set attributes on text, comment and attribute nodes - if ( nType === 3 || nType === 8 || nType === 2 ) { - return; - } - - // Fallback to prop when attributes are not supported - if ( typeof elem.getAttribute === "undefined" ) { - return jQuery.prop( elem, name, value ); - } - - // Attribute hooks are determined by the lowercase version - // Grab necessary hook if one is defined - if ( nType !== 1 || !jQuery.isXMLDoc( elem ) ) { - hooks = jQuery.attrHooks[ name.toLowerCase() ] || - ( jQuery.expr.match.bool.test( name ) ? boolHook : undefined ); - } - - if ( value !== undefined ) { - if ( value === null ) { - jQuery.removeAttr( elem, name ); - return; - } - - if ( hooks && "set" in hooks && - ( ret = hooks.set( elem, value, name ) ) !== undefined ) { - return ret; - } - - elem.setAttribute( name, value + "" ); - return value; - } - - if ( hooks && "get" in hooks && ( ret = hooks.get( elem, name ) ) !== null ) { - return ret; - } - - ret = jQuery.find.attr( elem, name ); - - // Non-existent attributes return null, we normalize to undefined - return ret == null ? undefined : ret; - }, - - attrHooks: { - type: { - set: function( elem, value ) { - if ( !support.radioValue && value === "radio" && - nodeName( elem, "input" ) ) { - var val = elem.value; - elem.setAttribute( "type", value ); - if ( val ) { - elem.value = val; - } - return value; - } - } - } - }, - - removeAttr: function( elem, value ) { - var name, - i = 0, - - // Attribute names can contain non-HTML whitespace characters - // https://html.spec.whatwg.org/multipage/syntax.html#attributes-2 - attrNames = value && value.match( rnothtmlwhite ); - - if ( attrNames && elem.nodeType === 1 ) { - while ( ( name = attrNames[ i++ ] ) ) { - elem.removeAttribute( name ); - } - } - } -} ); - -// Hooks for boolean attributes -boolHook = { - set: function( elem, value, name ) { - if ( value === false ) { - - // Remove boolean attributes when set to false - jQuery.removeAttr( elem, name ); - } else { - elem.setAttribute( name, name ); - } - return name; - } -}; - -jQuery.each( jQuery.expr.match.bool.source.match( /\w+/g ), function( _i, name ) { - var getter = attrHandle[ name ] || jQuery.find.attr; - - attrHandle[ name ] = function( elem, name, isXML ) { - var ret, handle, - lowercaseName = name.toLowerCase(); - - if ( !isXML ) { - - // Avoid an infinite loop by temporarily removing this function from the getter - handle = attrHandle[ lowercaseName ]; - attrHandle[ lowercaseName ] = ret; - ret = getter( elem, name, isXML ) != null ? - lowercaseName : - null; - attrHandle[ lowercaseName ] = handle; - } - return ret; - }; -} ); - - - - -var rfocusable = /^(?:input|select|textarea|button)$/i, - rclickable = /^(?:a|area)$/i; - -jQuery.fn.extend( { - prop: function( name, value ) { - return access( this, jQuery.prop, name, value, arguments.length > 1 ); - }, - - removeProp: function( name ) { - return this.each( function() { - delete this[ jQuery.propFix[ name ] || name ]; - } ); - } -} ); - -jQuery.extend( { - prop: function( elem, name, value ) { - var ret, hooks, - nType = elem.nodeType; - - // Don't get/set properties on text, comment and attribute nodes - if ( nType === 3 || nType === 8 || nType === 2 ) { - return; - } - - if ( nType !== 1 || !jQuery.isXMLDoc( elem ) ) { - - // Fix name and attach hooks - name = jQuery.propFix[ name ] || name; - hooks = jQuery.propHooks[ name ]; - } - - if ( value !== undefined ) { - if ( hooks && "set" in hooks && - ( ret = hooks.set( elem, value, name ) ) !== undefined ) { - return ret; - } - - return ( elem[ name ] = value ); - } - - if ( hooks && "get" in hooks && ( ret = hooks.get( elem, name ) ) !== null ) { - return ret; - } - - return elem[ name ]; - }, - - propHooks: { - tabIndex: { - get: function( elem ) { - - // Support: IE <=9 - 11 only - // elem.tabIndex doesn't always return the - // correct value when it hasn't been explicitly set - // https://web.archive.org/web/20141116233347/http://fluidproject.org/blog/2008/01/09/getting-setting-and-removing-tabindex-values-with-javascript/ - // Use proper attribute retrieval(#12072) - var tabindex = jQuery.find.attr( elem, "tabindex" ); - - if ( tabindex ) { - return parseInt( tabindex, 10 ); - } - - if ( - rfocusable.test( elem.nodeName ) || - rclickable.test( elem.nodeName ) && - elem.href - ) { - return 0; - } - - return -1; - } - } - }, - - propFix: { - "for": "htmlFor", - "class": "className" - } -} ); - -// Support: IE <=11 only -// Accessing the selectedIndex property -// forces the browser to respect setting selected -// on the option -// The getter ensures a default option is selected -// when in an optgroup -// eslint rule "no-unused-expressions" is disabled for this code -// since it considers such accessions noop -if ( !support.optSelected ) { - jQuery.propHooks.selected = { - get: function( elem ) { - - /* eslint no-unused-expressions: "off" */ - - var parent = elem.parentNode; - if ( parent && parent.parentNode ) { - parent.parentNode.selectedIndex; - } - return null; - }, - set: function( elem ) { - - /* eslint no-unused-expressions: "off" */ - - var parent = elem.parentNode; - if ( parent ) { - parent.selectedIndex; - - if ( parent.parentNode ) { - parent.parentNode.selectedIndex; - } - } - } - }; -} - -jQuery.each( [ - "tabIndex", - "readOnly", - "maxLength", - "cellSpacing", - "cellPadding", - "rowSpan", - "colSpan", - "useMap", - "frameBorder", - "contentEditable" -], function() { - jQuery.propFix[ this.toLowerCase() ] = this; -} ); - - - - - // Strip and collapse whitespace according to HTML spec - // https://infra.spec.whatwg.org/#strip-and-collapse-ascii-whitespace - function stripAndCollapse( value ) { - var tokens = value.match( rnothtmlwhite ) || []; - return tokens.join( " " ); - } - - -function getClass( elem ) { - return elem.getAttribute && elem.getAttribute( "class" ) || ""; -} - -function classesToArray( value ) { - if ( Array.isArray( value ) ) { - return value; - } - if ( typeof value === "string" ) { - return value.match( rnothtmlwhite ) || []; - } - return []; -} - -jQuery.fn.extend( { - addClass: function( value ) { - var classes, elem, cur, curValue, clazz, j, finalValue, - i = 0; - - if ( isFunction( value ) ) { - return this.each( function( j ) { - jQuery( this ).addClass( value.call( this, j, getClass( this ) ) ); - } ); - } - - classes = classesToArray( value ); - - if ( classes.length ) { - while ( ( elem = this[ i++ ] ) ) { - curValue = getClass( elem ); - cur = elem.nodeType === 1 && ( " " + stripAndCollapse( curValue ) + " " ); - - if ( cur ) { - j = 0; - while ( ( clazz = classes[ j++ ] ) ) { - if ( cur.indexOf( " " + clazz + " " ) < 0 ) { - cur += clazz + " "; - } - } - - // Only assign if different to avoid unneeded rendering. - finalValue = stripAndCollapse( cur ); - if ( curValue !== finalValue ) { - elem.setAttribute( "class", finalValue ); - } - } - } - } - - return this; - }, - - removeClass: function( value ) { - var classes, elem, cur, curValue, clazz, j, finalValue, - i = 0; - - if ( isFunction( value ) ) { - return this.each( function( j ) { - jQuery( this ).removeClass( value.call( this, j, getClass( this ) ) ); - } ); - } - - if ( !arguments.length ) { - return this.attr( "class", "" ); - } - - classes = classesToArray( value ); - - if ( classes.length ) { - while ( ( elem = this[ i++ ] ) ) { - curValue = getClass( elem ); - - // This expression is here for better compressibility (see addClass) - cur = elem.nodeType === 1 && ( " " + stripAndCollapse( curValue ) + " " ); - - if ( cur ) { - j = 0; - while ( ( clazz = classes[ j++ ] ) ) { - - // Remove *all* instances - while ( cur.indexOf( " " + clazz + " " ) > -1 ) { - cur = cur.replace( " " + clazz + " ", " " ); - } - } - - // Only assign if different to avoid unneeded rendering. - finalValue = stripAndCollapse( cur ); - if ( curValue !== finalValue ) { - elem.setAttribute( "class", finalValue ); - } - } - } - } - - return this; - }, - - toggleClass: function( value, stateVal ) { - var type = typeof value, - isValidValue = type === "string" || Array.isArray( value ); - - if ( typeof stateVal === "boolean" && isValidValue ) { - return stateVal ? this.addClass( value ) : this.removeClass( value ); - } - - if ( isFunction( value ) ) { - return this.each( function( i ) { - jQuery( this ).toggleClass( - value.call( this, i, getClass( this ), stateVal ), - stateVal - ); - } ); - } - - return this.each( function() { - var className, i, self, classNames; - - if ( isValidValue ) { - - // Toggle individual class names - i = 0; - self = jQuery( this ); - classNames = classesToArray( value ); - - while ( ( className = classNames[ i++ ] ) ) { - - // Check each className given, space separated list - if ( self.hasClass( className ) ) { - self.removeClass( className ); - } else { - self.addClass( className ); - } - } - - // Toggle whole class name - } else if ( value === undefined || type === "boolean" ) { - className = getClass( this ); - if ( className ) { - - // Store className if set - dataPriv.set( this, "__className__", className ); - } - - // If the element has a class name or if we're passed `false`, - // then remove the whole classname (if there was one, the above saved it). - // Otherwise bring back whatever was previously saved (if anything), - // falling back to the empty string if nothing was stored. - if ( this.setAttribute ) { - this.setAttribute( "class", - className || value === false ? - "" : - dataPriv.get( this, "__className__" ) || "" - ); - } - } - } ); - }, - - hasClass: function( selector ) { - var className, elem, - i = 0; - - className = " " + selector + " "; - while ( ( elem = this[ i++ ] ) ) { - if ( elem.nodeType === 1 && - ( " " + stripAndCollapse( getClass( elem ) ) + " " ).indexOf( className ) > -1 ) { - return true; - } - } - - return false; - } -} ); - - - - -var rreturn = /\r/g; - -jQuery.fn.extend( { - val: function( value ) { - var hooks, ret, valueIsFunction, - elem = this[ 0 ]; - - if ( !arguments.length ) { - if ( elem ) { - hooks = jQuery.valHooks[ elem.type ] || - jQuery.valHooks[ elem.nodeName.toLowerCase() ]; - - if ( hooks && - "get" in hooks && - ( ret = hooks.get( elem, "value" ) ) !== undefined - ) { - return ret; - } - - ret = elem.value; - - // Handle most common string cases - if ( typeof ret === "string" ) { - return ret.replace( rreturn, "" ); - } - - // Handle cases where value is null/undef or number - return ret == null ? "" : ret; - } - - return; - } - - valueIsFunction = isFunction( value ); - - return this.each( function( i ) { - var val; - - if ( this.nodeType !== 1 ) { - return; - } - - if ( valueIsFunction ) { - val = value.call( this, i, jQuery( this ).val() ); - } else { - val = value; - } - - // Treat null/undefined as ""; convert numbers to string - if ( val == null ) { - val = ""; - - } else if ( typeof val === "number" ) { - val += ""; - - } else if ( Array.isArray( val ) ) { - val = jQuery.map( val, function( value ) { - return value == null ? "" : value + ""; - } ); - } - - hooks = jQuery.valHooks[ this.type ] || jQuery.valHooks[ this.nodeName.toLowerCase() ]; - - // If set returns undefined, fall back to normal setting - if ( !hooks || !( "set" in hooks ) || hooks.set( this, val, "value" ) === undefined ) { - this.value = val; - } - } ); - } -} ); - -jQuery.extend( { - valHooks: { - option: { - get: function( elem ) { - - var val = jQuery.find.attr( elem, "value" ); - return val != null ? - val : - - // Support: IE <=10 - 11 only - // option.text throws exceptions (#14686, #14858) - // Strip and collapse whitespace - // https://html.spec.whatwg.org/#strip-and-collapse-whitespace - stripAndCollapse( jQuery.text( elem ) ); - } - }, - select: { - get: function( elem ) { - var value, option, i, - options = elem.options, - index = elem.selectedIndex, - one = elem.type === "select-one", - values = one ? null : [], - max = one ? index + 1 : options.length; - - if ( index < 0 ) { - i = max; - - } else { - i = one ? index : 0; - } - - // Loop through all the selected options - for ( ; i < max; i++ ) { - option = options[ i ]; - - // Support: IE <=9 only - // IE8-9 doesn't update selected after form reset (#2551) - if ( ( option.selected || i === index ) && - - // Don't return options that are disabled or in a disabled optgroup - !option.disabled && - ( !option.parentNode.disabled || - !nodeName( option.parentNode, "optgroup" ) ) ) { - - // Get the specific value for the option - value = jQuery( option ).val(); - - // We don't need an array for one selects - if ( one ) { - return value; - } - - // Multi-Selects return an array - values.push( value ); - } - } - - return values; - }, - - set: function( elem, value ) { - var optionSet, option, - options = elem.options, - values = jQuery.makeArray( value ), - i = options.length; - - while ( i-- ) { - option = options[ i ]; - - /* eslint-disable no-cond-assign */ - - if ( option.selected = - jQuery.inArray( jQuery.valHooks.option.get( option ), values ) > -1 - ) { - optionSet = true; - } - - /* eslint-enable no-cond-assign */ - } - - // Force browsers to behave consistently when non-matching value is set - if ( !optionSet ) { - elem.selectedIndex = -1; - } - return values; - } - } - } -} ); - -// Radios and checkboxes getter/setter -jQuery.each( [ "radio", "checkbox" ], function() { - jQuery.valHooks[ this ] = { - set: function( elem, value ) { - if ( Array.isArray( value ) ) { - return ( elem.checked = jQuery.inArray( jQuery( elem ).val(), value ) > -1 ); - } - } - }; - if ( !support.checkOn ) { - jQuery.valHooks[ this ].get = function( elem ) { - return elem.getAttribute( "value" ) === null ? "on" : elem.value; - }; - } -} ); - - - - -// Return jQuery for attributes-only inclusion - - -support.focusin = "onfocusin" in window; - - -var rfocusMorph = /^(?:focusinfocus|focusoutblur)$/, - stopPropagationCallback = function( e ) { - e.stopPropagation(); - }; - -jQuery.extend( jQuery.event, { - - trigger: function( event, data, elem, onlyHandlers ) { - - var i, cur, tmp, bubbleType, ontype, handle, special, lastElement, - eventPath = [ elem || document ], - type = hasOwn.call( event, "type" ) ? event.type : event, - namespaces = hasOwn.call( event, "namespace" ) ? event.namespace.split( "." ) : []; - - cur = lastElement = tmp = elem = elem || document; - - // Don't do events on text and comment nodes - if ( elem.nodeType === 3 || elem.nodeType === 8 ) { - return; - } - - // focus/blur morphs to focusin/out; ensure we're not firing them right now - if ( rfocusMorph.test( type + jQuery.event.triggered ) ) { - return; - } - - if ( type.indexOf( "." ) > -1 ) { - - // Namespaced trigger; create a regexp to match event type in handle() - namespaces = type.split( "." ); - type = namespaces.shift(); - namespaces.sort(); - } - ontype = type.indexOf( ":" ) < 0 && "on" + type; - - // Caller can pass in a jQuery.Event object, Object, or just an event type string - event = event[ jQuery.expando ] ? - event : - new jQuery.Event( type, typeof event === "object" && event ); - - // Trigger bitmask: & 1 for native handlers; & 2 for jQuery (always true) - event.isTrigger = onlyHandlers ? 2 : 3; - event.namespace = namespaces.join( "." ); - event.rnamespace = event.namespace ? - new RegExp( "(^|\\.)" + namespaces.join( "\\.(?:.*\\.|)" ) + "(\\.|$)" ) : - null; - - // Clean up the event in case it is being reused - event.result = undefined; - if ( !event.target ) { - event.target = elem; - } - - // Clone any incoming data and prepend the event, creating the handler arg list - data = data == null ? - [ event ] : - jQuery.makeArray( data, [ event ] ); - - // Allow special events to draw outside the lines - special = jQuery.event.special[ type ] || {}; - if ( !onlyHandlers && special.trigger && special.trigger.apply( elem, data ) === false ) { - return; - } - - // Determine event propagation path in advance, per W3C events spec (#9951) - // Bubble up to document, then to window; watch for a global ownerDocument var (#9724) - if ( !onlyHandlers && !special.noBubble && !isWindow( elem ) ) { - - bubbleType = special.delegateType || type; - if ( !rfocusMorph.test( bubbleType + type ) ) { - cur = cur.parentNode; - } - for ( ; cur; cur = cur.parentNode ) { - eventPath.push( cur ); - tmp = cur; - } - - // Only add window if we got to document (e.g., not plain obj or detached DOM) - if ( tmp === ( elem.ownerDocument || document ) ) { - eventPath.push( tmp.defaultView || tmp.parentWindow || window ); - } - } - - // Fire handlers on the event path - i = 0; - while ( ( cur = eventPath[ i++ ] ) && !event.isPropagationStopped() ) { - lastElement = cur; - event.type = i > 1 ? - bubbleType : - special.bindType || type; - - // jQuery handler - handle = ( - dataPriv.get( cur, "events" ) || Object.create( null ) - )[ event.type ] && - dataPriv.get( cur, "handle" ); - if ( handle ) { - handle.apply( cur, data ); - } - - // Native handler - handle = ontype && cur[ ontype ]; - if ( handle && handle.apply && acceptData( cur ) ) { - event.result = handle.apply( cur, data ); - if ( event.result === false ) { - event.preventDefault(); - } - } - } - event.type = type; - - // If nobody prevented the default action, do it now - if ( !onlyHandlers && !event.isDefaultPrevented() ) { - - if ( ( !special._default || - special._default.apply( eventPath.pop(), data ) === false ) && - acceptData( elem ) ) { - - // Call a native DOM method on the target with the same name as the event. - // Don't do default actions on window, that's where global variables be (#6170) - if ( ontype && isFunction( elem[ type ] ) && !isWindow( elem ) ) { - - // Don't re-trigger an onFOO event when we call its FOO() method - tmp = elem[ ontype ]; - - if ( tmp ) { - elem[ ontype ] = null; - } - - // Prevent re-triggering of the same event, since we already bubbled it above - jQuery.event.triggered = type; - - if ( event.isPropagationStopped() ) { - lastElement.addEventListener( type, stopPropagationCallback ); - } - - elem[ type ](); - - if ( event.isPropagationStopped() ) { - lastElement.removeEventListener( type, stopPropagationCallback ); - } - - jQuery.event.triggered = undefined; - - if ( tmp ) { - elem[ ontype ] = tmp; - } - } - } - } - - return event.result; - }, - - // Piggyback on a donor event to simulate a different one - // Used only for `focus(in | out)` events - simulate: function( type, elem, event ) { - var e = jQuery.extend( - new jQuery.Event(), - event, - { - type: type, - isSimulated: true - } - ); - - jQuery.event.trigger( e, null, elem ); - } - -} ); - -jQuery.fn.extend( { - - trigger: function( type, data ) { - return this.each( function() { - jQuery.event.trigger( type, data, this ); - } ); - }, - triggerHandler: function( type, data ) { - var elem = this[ 0 ]; - if ( elem ) { - return jQuery.event.trigger( type, data, elem, true ); - } - } -} ); - - -// Support: Firefox <=44 -// Firefox doesn't have focus(in | out) events -// Related ticket - https://bugzilla.mozilla.org/show_bug.cgi?id=687787 -// -// Support: Chrome <=48 - 49, Safari <=9.0 - 9.1 -// focus(in | out) events fire after focus & blur events, -// which is spec violation - http://www.w3.org/TR/DOM-Level-3-Events/#events-focusevent-event-order -// Related ticket - https://bugs.chromium.org/p/chromium/issues/detail?id=449857 -if ( !support.focusin ) { - jQuery.each( { focus: "focusin", blur: "focusout" }, function( orig, fix ) { - - // Attach a single capturing handler on the document while someone wants focusin/focusout - var handler = function( event ) { - jQuery.event.simulate( fix, event.target, jQuery.event.fix( event ) ); - }; - - jQuery.event.special[ fix ] = { - setup: function() { - - // Handle: regular nodes (via `this.ownerDocument`), window - // (via `this.document`) & document (via `this`). - var doc = this.ownerDocument || this.document || this, - attaches = dataPriv.access( doc, fix ); - - if ( !attaches ) { - doc.addEventListener( orig, handler, true ); - } - dataPriv.access( doc, fix, ( attaches || 0 ) + 1 ); - }, - teardown: function() { - var doc = this.ownerDocument || this.document || this, - attaches = dataPriv.access( doc, fix ) - 1; - - if ( !attaches ) { - doc.removeEventListener( orig, handler, true ); - dataPriv.remove( doc, fix ); - - } else { - dataPriv.access( doc, fix, attaches ); - } - } - }; - } ); -} -var location = window.location; - -var nonce = { guid: Date.now() }; - -var rquery = ( /\?/ ); - - - -// Cross-browser xml parsing -jQuery.parseXML = function( data ) { - var xml; - if ( !data || typeof data !== "string" ) { - return null; - } - - // Support: IE 9 - 11 only - // IE throws on parseFromString with invalid input. - try { - xml = ( new window.DOMParser() ).parseFromString( data, "text/xml" ); - } catch ( e ) { - xml = undefined; - } - - if ( !xml || xml.getElementsByTagName( "parsererror" ).length ) { - jQuery.error( "Invalid XML: " + data ); - } - return xml; -}; - - -var - rbracket = /\[\]$/, - rCRLF = /\r?\n/g, - rsubmitterTypes = /^(?:submit|button|image|reset|file)$/i, - rsubmittable = /^(?:input|select|textarea|keygen)/i; - -function buildParams( prefix, obj, traditional, add ) { - var name; - - if ( Array.isArray( obj ) ) { - - // Serialize array item. - jQuery.each( obj, function( i, v ) { - if ( traditional || rbracket.test( prefix ) ) { - - // Treat each array item as a scalar. - add( prefix, v ); - - } else { - - // Item is non-scalar (array or object), encode its numeric index. - buildParams( - prefix + "[" + ( typeof v === "object" && v != null ? i : "" ) + "]", - v, - traditional, - add - ); - } - } ); - - } else if ( !traditional && toType( obj ) === "object" ) { - - // Serialize object item. - for ( name in obj ) { - buildParams( prefix + "[" + name + "]", obj[ name ], traditional, add ); - } - - } else { - - // Serialize scalar item. - add( prefix, obj ); - } -} - -// Serialize an array of form elements or a set of -// key/values into a query string -jQuery.param = function( a, traditional ) { - var prefix, - s = [], - add = function( key, valueOrFunction ) { - - // If value is a function, invoke it and use its return value - var value = isFunction( valueOrFunction ) ? - valueOrFunction() : - valueOrFunction; - - s[ s.length ] = encodeURIComponent( key ) + "=" + - encodeURIComponent( value == null ? "" : value ); - }; - - if ( a == null ) { - return ""; - } - - // If an array was passed in, assume that it is an array of form elements. - if ( Array.isArray( a ) || ( a.jquery && !jQuery.isPlainObject( a ) ) ) { - - // Serialize the form elements - jQuery.each( a, function() { - add( this.name, this.value ); - } ); - - } else { - - // If traditional, encode the "old" way (the way 1.3.2 or older - // did it), otherwise encode params recursively. - for ( prefix in a ) { - buildParams( prefix, a[ prefix ], traditional, add ); - } - } - - // Return the resulting serialization - return s.join( "&" ); -}; - -jQuery.fn.extend( { - serialize: function() { - return jQuery.param( this.serializeArray() ); - }, - serializeArray: function() { - return this.map( function() { - - // Can add propHook for "elements" to filter or add form elements - var elements = jQuery.prop( this, "elements" ); - return elements ? jQuery.makeArray( elements ) : this; - } ) - .filter( function() { - var type = this.type; - - // Use .is( ":disabled" ) so that fieldset[disabled] works - return this.name && !jQuery( this ).is( ":disabled" ) && - rsubmittable.test( this.nodeName ) && !rsubmitterTypes.test( type ) && - ( this.checked || !rcheckableType.test( type ) ); - } ) - .map( function( _i, elem ) { - var val = jQuery( this ).val(); - - if ( val == null ) { - return null; - } - - if ( Array.isArray( val ) ) { - return jQuery.map( val, function( val ) { - return { name: elem.name, value: val.replace( rCRLF, "\r\n" ) }; - } ); - } - - return { name: elem.name, value: val.replace( rCRLF, "\r\n" ) }; - } ).get(); - } -} ); - - -var - r20 = /%20/g, - rhash = /#.*$/, - rantiCache = /([?&])_=[^&]*/, - rheaders = /^(.*?):[ \t]*([^\r\n]*)$/mg, - - // #7653, #8125, #8152: local protocol detection - rlocalProtocol = /^(?:about|app|app-storage|.+-extension|file|res|widget):$/, - rnoContent = /^(?:GET|HEAD)$/, - rprotocol = /^\/\//, - - /* Prefilters - * 1) They are useful to introduce custom dataTypes (see ajax/jsonp.js for an example) - * 2) These are called: - * - BEFORE asking for a transport - * - AFTER param serialization (s.data is a string if s.processData is true) - * 3) key is the dataType - * 4) the catchall symbol "*" can be used - * 5) execution will start with transport dataType and THEN continue down to "*" if needed - */ - prefilters = {}, - - /* Transports bindings - * 1) key is the dataType - * 2) the catchall symbol "*" can be used - * 3) selection will start with transport dataType and THEN go to "*" if needed - */ - transports = {}, - - // Avoid comment-prolog char sequence (#10098); must appease lint and evade compression - allTypes = "*/".concat( "*" ), - - // Anchor tag for parsing the document origin - originAnchor = document.createElement( "a" ); - originAnchor.href = location.href; - -// Base "constructor" for jQuery.ajaxPrefilter and jQuery.ajaxTransport -function addToPrefiltersOrTransports( structure ) { - - // dataTypeExpression is optional and defaults to "*" - return function( dataTypeExpression, func ) { - - if ( typeof dataTypeExpression !== "string" ) { - func = dataTypeExpression; - dataTypeExpression = "*"; - } - - var dataType, - i = 0, - dataTypes = dataTypeExpression.toLowerCase().match( rnothtmlwhite ) || []; - - if ( isFunction( func ) ) { - - // For each dataType in the dataTypeExpression - while ( ( dataType = dataTypes[ i++ ] ) ) { - - // Prepend if requested - if ( dataType[ 0 ] === "+" ) { - dataType = dataType.slice( 1 ) || "*"; - ( structure[ dataType ] = structure[ dataType ] || [] ).unshift( func ); - - // Otherwise append - } else { - ( structure[ dataType ] = structure[ dataType ] || [] ).push( func ); - } - } - } - }; -} - -// Base inspection function for prefilters and transports -function inspectPrefiltersOrTransports( structure, options, originalOptions, jqXHR ) { - - var inspected = {}, - seekingTransport = ( structure === transports ); - - function inspect( dataType ) { - var selected; - inspected[ dataType ] = true; - jQuery.each( structure[ dataType ] || [], function( _, prefilterOrFactory ) { - var dataTypeOrTransport = prefilterOrFactory( options, originalOptions, jqXHR ); - if ( typeof dataTypeOrTransport === "string" && - !seekingTransport && !inspected[ dataTypeOrTransport ] ) { - - options.dataTypes.unshift( dataTypeOrTransport ); - inspect( dataTypeOrTransport ); - return false; - } else if ( seekingTransport ) { - return !( selected = dataTypeOrTransport ); - } - } ); - return selected; - } - - return inspect( options.dataTypes[ 0 ] ) || !inspected[ "*" ] && inspect( "*" ); -} - -// A special extend for ajax options -// that takes "flat" options (not to be deep extended) -// Fixes #9887 -function ajaxExtend( target, src ) { - var key, deep, - flatOptions = jQuery.ajaxSettings.flatOptions || {}; - - for ( key in src ) { - if ( src[ key ] !== undefined ) { - ( flatOptions[ key ] ? target : ( deep || ( deep = {} ) ) )[ key ] = src[ key ]; - } - } - if ( deep ) { - jQuery.extend( true, target, deep ); - } - - return target; -} - -/* Handles responses to an ajax request: - * - finds the right dataType (mediates between content-type and expected dataType) - * - returns the corresponding response - */ -function ajaxHandleResponses( s, jqXHR, responses ) { - - var ct, type, finalDataType, firstDataType, - contents = s.contents, - dataTypes = s.dataTypes; - - // Remove auto dataType and get content-type in the process - while ( dataTypes[ 0 ] === "*" ) { - dataTypes.shift(); - if ( ct === undefined ) { - ct = s.mimeType || jqXHR.getResponseHeader( "Content-Type" ); - } - } - - // Check if we're dealing with a known content-type - if ( ct ) { - for ( type in contents ) { - if ( contents[ type ] && contents[ type ].test( ct ) ) { - dataTypes.unshift( type ); - break; - } - } - } - - // Check to see if we have a response for the expected dataType - if ( dataTypes[ 0 ] in responses ) { - finalDataType = dataTypes[ 0 ]; - } else { - - // Try convertible dataTypes - for ( type in responses ) { - if ( !dataTypes[ 0 ] || s.converters[ type + " " + dataTypes[ 0 ] ] ) { - finalDataType = type; - break; - } - if ( !firstDataType ) { - firstDataType = type; - } - } - - // Or just use first one - finalDataType = finalDataType || firstDataType; - } - - // If we found a dataType - // We add the dataType to the list if needed - // and return the corresponding response - if ( finalDataType ) { - if ( finalDataType !== dataTypes[ 0 ] ) { - dataTypes.unshift( finalDataType ); - } - return responses[ finalDataType ]; - } -} - -/* Chain conversions given the request and the original response - * Also sets the responseXXX fields on the jqXHR instance - */ -function ajaxConvert( s, response, jqXHR, isSuccess ) { - var conv2, current, conv, tmp, prev, - converters = {}, - - // Work with a copy of dataTypes in case we need to modify it for conversion - dataTypes = s.dataTypes.slice(); - - // Create converters map with lowercased keys - if ( dataTypes[ 1 ] ) { - for ( conv in s.converters ) { - converters[ conv.toLowerCase() ] = s.converters[ conv ]; - } - } - - current = dataTypes.shift(); - - // Convert to each sequential dataType - while ( current ) { - - if ( s.responseFields[ current ] ) { - jqXHR[ s.responseFields[ current ] ] = response; - } - - // Apply the dataFilter if provided - if ( !prev && isSuccess && s.dataFilter ) { - response = s.dataFilter( response, s.dataType ); - } - - prev = current; - current = dataTypes.shift(); - - if ( current ) { - - // There's only work to do if current dataType is non-auto - if ( current === "*" ) { - - current = prev; - - // Convert response if prev dataType is non-auto and differs from current - } else if ( prev !== "*" && prev !== current ) { - - // Seek a direct converter - conv = converters[ prev + " " + current ] || converters[ "* " + current ]; - - // If none found, seek a pair - if ( !conv ) { - for ( conv2 in converters ) { - - // If conv2 outputs current - tmp = conv2.split( " " ); - if ( tmp[ 1 ] === current ) { - - // If prev can be converted to accepted input - conv = converters[ prev + " " + tmp[ 0 ] ] || - converters[ "* " + tmp[ 0 ] ]; - if ( conv ) { - - // Condense equivalence converters - if ( conv === true ) { - conv = converters[ conv2 ]; - - // Otherwise, insert the intermediate dataType - } else if ( converters[ conv2 ] !== true ) { - current = tmp[ 0 ]; - dataTypes.unshift( tmp[ 1 ] ); - } - break; - } - } - } - } - - // Apply converter (if not an equivalence) - if ( conv !== true ) { - - // Unless errors are allowed to bubble, catch and return them - if ( conv && s.throws ) { - response = conv( response ); - } else { - try { - response = conv( response ); - } catch ( e ) { - return { - state: "parsererror", - error: conv ? e : "No conversion from " + prev + " to " + current - }; - } - } - } - } - } - } - - return { state: "success", data: response }; -} - -jQuery.extend( { - - // Counter for holding the number of active queries - active: 0, - - // Last-Modified header cache for next request - lastModified: {}, - etag: {}, - - ajaxSettings: { - url: location.href, - type: "GET", - isLocal: rlocalProtocol.test( location.protocol ), - global: true, - processData: true, - async: true, - contentType: "application/x-www-form-urlencoded; charset=UTF-8", - - /* - timeout: 0, - data: null, - dataType: null, - username: null, - password: null, - cache: null, - throws: false, - traditional: false, - headers: {}, - */ - - accepts: { - "*": allTypes, - text: "text/plain", - html: "text/html", - xml: "application/xml, text/xml", - json: "application/json, text/javascript" - }, - - contents: { - xml: /\bxml\b/, - html: /\bhtml/, - json: /\bjson\b/ - }, - - responseFields: { - xml: "responseXML", - text: "responseText", - json: "responseJSON" - }, - - // Data converters - // Keys separate source (or catchall "*") and destination types with a single space - converters: { - - // Convert anything to text - "* text": String, - - // Text to html (true = no transformation) - "text html": true, - - // Evaluate text as a json expression - "text json": JSON.parse, - - // Parse text as xml - "text xml": jQuery.parseXML - }, - - // For options that shouldn't be deep extended: - // you can add your own custom options here if - // and when you create one that shouldn't be - // deep extended (see ajaxExtend) - flatOptions: { - url: true, - context: true - } - }, - - // Creates a full fledged settings object into target - // with both ajaxSettings and settings fields. - // If target is omitted, writes into ajaxSettings. - ajaxSetup: function( target, settings ) { - return settings ? - - // Building a settings object - ajaxExtend( ajaxExtend( target, jQuery.ajaxSettings ), settings ) : - - // Extending ajaxSettings - ajaxExtend( jQuery.ajaxSettings, target ); - }, - - ajaxPrefilter: addToPrefiltersOrTransports( prefilters ), - ajaxTransport: addToPrefiltersOrTransports( transports ), - - // Main method - ajax: function( url, options ) { - - // If url is an object, simulate pre-1.5 signature - if ( typeof url === "object" ) { - options = url; - url = undefined; - } - - // Force options to be an object - options = options || {}; - - var transport, - - // URL without anti-cache param - cacheURL, - - // Response headers - responseHeadersString, - responseHeaders, - - // timeout handle - timeoutTimer, - - // Url cleanup var - urlAnchor, - - // Request state (becomes false upon send and true upon completion) - completed, - - // To know if global events are to be dispatched - fireGlobals, - - // Loop variable - i, - - // uncached part of the url - uncached, - - // Create the final options object - s = jQuery.ajaxSetup( {}, options ), - - // Callbacks context - callbackContext = s.context || s, - - // Context for global events is callbackContext if it is a DOM node or jQuery collection - globalEventContext = s.context && - ( callbackContext.nodeType || callbackContext.jquery ) ? - jQuery( callbackContext ) : - jQuery.event, - - // Deferreds - deferred = jQuery.Deferred(), - completeDeferred = jQuery.Callbacks( "once memory" ), - - // Status-dependent callbacks - statusCode = s.statusCode || {}, - - // Headers (they are sent all at once) - requestHeaders = {}, - requestHeadersNames = {}, - - // Default abort message - strAbort = "canceled", - - // Fake xhr - jqXHR = { - readyState: 0, - - // Builds headers hashtable if needed - getResponseHeader: function( key ) { - var match; - if ( completed ) { - if ( !responseHeaders ) { - responseHeaders = {}; - while ( ( match = rheaders.exec( responseHeadersString ) ) ) { - responseHeaders[ match[ 1 ].toLowerCase() + " " ] = - ( responseHeaders[ match[ 1 ].toLowerCase() + " " ] || [] ) - .concat( match[ 2 ] ); - } - } - match = responseHeaders[ key.toLowerCase() + " " ]; - } - return match == null ? null : match.join( ", " ); - }, - - // Raw string - getAllResponseHeaders: function() { - return completed ? responseHeadersString : null; - }, - - // Caches the header - setRequestHeader: function( name, value ) { - if ( completed == null ) { - name = requestHeadersNames[ name.toLowerCase() ] = - requestHeadersNames[ name.toLowerCase() ] || name; - requestHeaders[ name ] = value; - } - return this; - }, - - // Overrides response content-type header - overrideMimeType: function( type ) { - if ( completed == null ) { - s.mimeType = type; - } - return this; - }, - - // Status-dependent callbacks - statusCode: function( map ) { - var code; - if ( map ) { - if ( completed ) { - - // Execute the appropriate callbacks - jqXHR.always( map[ jqXHR.status ] ); - } else { - - // Lazy-add the new callbacks in a way that preserves old ones - for ( code in map ) { - statusCode[ code ] = [ statusCode[ code ], map[ code ] ]; - } - } - } - return this; - }, - - // Cancel the request - abort: function( statusText ) { - var finalText = statusText || strAbort; - if ( transport ) { - transport.abort( finalText ); - } - done( 0, finalText ); - return this; - } - }; - - // Attach deferreds - deferred.promise( jqXHR ); - - // Add protocol if not provided (prefilters might expect it) - // Handle falsy url in the settings object (#10093: consistency with old signature) - // We also use the url parameter if available - s.url = ( ( url || s.url || location.href ) + "" ) - .replace( rprotocol, location.protocol + "//" ); - - // Alias method option to type as per ticket #12004 - s.type = options.method || options.type || s.method || s.type; - - // Extract dataTypes list - s.dataTypes = ( s.dataType || "*" ).toLowerCase().match( rnothtmlwhite ) || [ "" ]; - - // A cross-domain request is in order when the origin doesn't match the current origin. - if ( s.crossDomain == null ) { - urlAnchor = document.createElement( "a" ); - - // Support: IE <=8 - 11, Edge 12 - 15 - // IE throws exception on accessing the href property if url is malformed, - // e.g. http://example.com:80x/ - try { - urlAnchor.href = s.url; - - // Support: IE <=8 - 11 only - // Anchor's host property isn't correctly set when s.url is relative - urlAnchor.href = urlAnchor.href; - s.crossDomain = originAnchor.protocol + "//" + originAnchor.host !== - urlAnchor.protocol + "//" + urlAnchor.host; - } catch ( e ) { - - // If there is an error parsing the URL, assume it is crossDomain, - // it can be rejected by the transport if it is invalid - s.crossDomain = true; - } - } - - // Convert data if not already a string - if ( s.data && s.processData && typeof s.data !== "string" ) { - s.data = jQuery.param( s.data, s.traditional ); - } - - // Apply prefilters - inspectPrefiltersOrTransports( prefilters, s, options, jqXHR ); - - // If request was aborted inside a prefilter, stop there - if ( completed ) { - return jqXHR; - } - - // We can fire global events as of now if asked to - // Don't fire events if jQuery.event is undefined in an AMD-usage scenario (#15118) - fireGlobals = jQuery.event && s.global; - - // Watch for a new set of requests - if ( fireGlobals && jQuery.active++ === 0 ) { - jQuery.event.trigger( "ajaxStart" ); - } - - // Uppercase the type - s.type = s.type.toUpperCase(); - - // Determine if request has content - s.hasContent = !rnoContent.test( s.type ); - - // Save the URL in case we're toying with the If-Modified-Since - // and/or If-None-Match header later on - // Remove hash to simplify url manipulation - cacheURL = s.url.replace( rhash, "" ); - - // More options handling for requests with no content - if ( !s.hasContent ) { - - // Remember the hash so we can put it back - uncached = s.url.slice( cacheURL.length ); - - // If data is available and should be processed, append data to url - if ( s.data && ( s.processData || typeof s.data === "string" ) ) { - cacheURL += ( rquery.test( cacheURL ) ? "&" : "?" ) + s.data; - - // #9682: remove data so that it's not used in an eventual retry - delete s.data; - } - - // Add or update anti-cache param if needed - if ( s.cache === false ) { - cacheURL = cacheURL.replace( rantiCache, "$1" ); - uncached = ( rquery.test( cacheURL ) ? "&" : "?" ) + "_=" + ( nonce.guid++ ) + - uncached; - } - - // Put hash and anti-cache on the URL that will be requested (gh-1732) - s.url = cacheURL + uncached; - - // Change '%20' to '+' if this is encoded form body content (gh-2658) - } else if ( s.data && s.processData && - ( s.contentType || "" ).indexOf( "application/x-www-form-urlencoded" ) === 0 ) { - s.data = s.data.replace( r20, "+" ); - } - - // Set the If-Modified-Since and/or If-None-Match header, if in ifModified mode. - if ( s.ifModified ) { - if ( jQuery.lastModified[ cacheURL ] ) { - jqXHR.setRequestHeader( "If-Modified-Since", jQuery.lastModified[ cacheURL ] ); - } - if ( jQuery.etag[ cacheURL ] ) { - jqXHR.setRequestHeader( "If-None-Match", jQuery.etag[ cacheURL ] ); - } - } - - // Set the correct header, if data is being sent - if ( s.data && s.hasContent && s.contentType !== false || options.contentType ) { - jqXHR.setRequestHeader( "Content-Type", s.contentType ); - } - - // Set the Accepts header for the server, depending on the dataType - jqXHR.setRequestHeader( - "Accept", - s.dataTypes[ 0 ] && s.accepts[ s.dataTypes[ 0 ] ] ? - s.accepts[ s.dataTypes[ 0 ] ] + - ( s.dataTypes[ 0 ] !== "*" ? ", " + allTypes + "; q=0.01" : "" ) : - s.accepts[ "*" ] - ); - - // Check for headers option - for ( i in s.headers ) { - jqXHR.setRequestHeader( i, s.headers[ i ] ); - } - - // Allow custom headers/mimetypes and early abort - if ( s.beforeSend && - ( s.beforeSend.call( callbackContext, jqXHR, s ) === false || completed ) ) { - - // Abort if not done already and return - return jqXHR.abort(); - } - - // Aborting is no longer a cancellation - strAbort = "abort"; - - // Install callbacks on deferreds - completeDeferred.add( s.complete ); - jqXHR.done( s.success ); - jqXHR.fail( s.error ); - - // Get transport - transport = inspectPrefiltersOrTransports( transports, s, options, jqXHR ); - - // If no transport, we auto-abort - if ( !transport ) { - done( -1, "No Transport" ); - } else { - jqXHR.readyState = 1; - - // Send global event - if ( fireGlobals ) { - globalEventContext.trigger( "ajaxSend", [ jqXHR, s ] ); - } - - // If request was aborted inside ajaxSend, stop there - if ( completed ) { - return jqXHR; - } - - // Timeout - if ( s.async && s.timeout > 0 ) { - timeoutTimer = window.setTimeout( function() { - jqXHR.abort( "timeout" ); - }, s.timeout ); - } - - try { - completed = false; - transport.send( requestHeaders, done ); - } catch ( e ) { - - // Rethrow post-completion exceptions - if ( completed ) { - throw e; - } - - // Propagate others as results - done( -1, e ); - } - } - - // Callback for when everything is done - function done( status, nativeStatusText, responses, headers ) { - var isSuccess, success, error, response, modified, - statusText = nativeStatusText; - - // Ignore repeat invocations - if ( completed ) { - return; - } - - completed = true; - - // Clear timeout if it exists - if ( timeoutTimer ) { - window.clearTimeout( timeoutTimer ); - } - - // Dereference transport for early garbage collection - // (no matter how long the jqXHR object will be used) - transport = undefined; - - // Cache response headers - responseHeadersString = headers || ""; - - // Set readyState - jqXHR.readyState = status > 0 ? 4 : 0; - - // Determine if successful - isSuccess = status >= 200 && status < 300 || status === 304; - - // Get response data - if ( responses ) { - response = ajaxHandleResponses( s, jqXHR, responses ); - } - - // Use a noop converter for missing script - if ( !isSuccess && jQuery.inArray( "script", s.dataTypes ) > -1 ) { - s.converters[ "text script" ] = function() {}; - } - - // Convert no matter what (that way responseXXX fields are always set) - response = ajaxConvert( s, response, jqXHR, isSuccess ); - - // If successful, handle type chaining - if ( isSuccess ) { - - // Set the If-Modified-Since and/or If-None-Match header, if in ifModified mode. - if ( s.ifModified ) { - modified = jqXHR.getResponseHeader( "Last-Modified" ); - if ( modified ) { - jQuery.lastModified[ cacheURL ] = modified; - } - modified = jqXHR.getResponseHeader( "etag" ); - if ( modified ) { - jQuery.etag[ cacheURL ] = modified; - } - } - - // if no content - if ( status === 204 || s.type === "HEAD" ) { - statusText = "nocontent"; - - // if not modified - } else if ( status === 304 ) { - statusText = "notmodified"; - - // If we have data, let's convert it - } else { - statusText = response.state; - success = response.data; - error = response.error; - isSuccess = !error; - } - } else { - - // Extract error from statusText and normalize for non-aborts - error = statusText; - if ( status || !statusText ) { - statusText = "error"; - if ( status < 0 ) { - status = 0; - } - } - } - - // Set data for the fake xhr object - jqXHR.status = status; - jqXHR.statusText = ( nativeStatusText || statusText ) + ""; - - // Success/Error - if ( isSuccess ) { - deferred.resolveWith( callbackContext, [ success, statusText, jqXHR ] ); - } else { - deferred.rejectWith( callbackContext, [ jqXHR, statusText, error ] ); - } - - // Status-dependent callbacks - jqXHR.statusCode( statusCode ); - statusCode = undefined; - - if ( fireGlobals ) { - globalEventContext.trigger( isSuccess ? "ajaxSuccess" : "ajaxError", - [ jqXHR, s, isSuccess ? success : error ] ); - } - - // Complete - completeDeferred.fireWith( callbackContext, [ jqXHR, statusText ] ); - - if ( fireGlobals ) { - globalEventContext.trigger( "ajaxComplete", [ jqXHR, s ] ); - - // Handle the global AJAX counter - if ( !( --jQuery.active ) ) { - jQuery.event.trigger( "ajaxStop" ); - } - } - } - - return jqXHR; - }, - - getJSON: function( url, data, callback ) { - return jQuery.get( url, data, callback, "json" ); - }, - - getScript: function( url, callback ) { - return jQuery.get( url, undefined, callback, "script" ); - } -} ); - -jQuery.each( [ "get", "post" ], function( _i, method ) { - jQuery[ method ] = function( url, data, callback, type ) { - - // Shift arguments if data argument was omitted - if ( isFunction( data ) ) { - type = type || callback; - callback = data; - data = undefined; - } - - // The url can be an options object (which then must have .url) - return jQuery.ajax( jQuery.extend( { - url: url, - type: method, - dataType: type, - data: data, - success: callback - }, jQuery.isPlainObject( url ) && url ) ); - }; -} ); - -jQuery.ajaxPrefilter( function( s ) { - var i; - for ( i in s.headers ) { - if ( i.toLowerCase() === "content-type" ) { - s.contentType = s.headers[ i ] || ""; - } - } -} ); - - -jQuery._evalUrl = function( url, options, doc ) { - return jQuery.ajax( { - url: url, - - // Make this explicit, since user can override this through ajaxSetup (#11264) - type: "GET", - dataType: "script", - cache: true, - async: false, - global: false, - - // Only evaluate the response if it is successful (gh-4126) - // dataFilter is not invoked for failure responses, so using it instead - // of the default converter is kludgy but it works. - converters: { - "text script": function() {} - }, - dataFilter: function( response ) { - jQuery.globalEval( response, options, doc ); - } - } ); -}; - - -jQuery.fn.extend( { - wrapAll: function( html ) { - var wrap; - - if ( this[ 0 ] ) { - if ( isFunction( html ) ) { - html = html.call( this[ 0 ] ); - } - - // The elements to wrap the target around - wrap = jQuery( html, this[ 0 ].ownerDocument ).eq( 0 ).clone( true ); - - if ( this[ 0 ].parentNode ) { - wrap.insertBefore( this[ 0 ] ); - } - - wrap.map( function() { - var elem = this; - - while ( elem.firstElementChild ) { - elem = elem.firstElementChild; - } - - return elem; - } ).append( this ); - } - - return this; - }, - - wrapInner: function( html ) { - if ( isFunction( html ) ) { - return this.each( function( i ) { - jQuery( this ).wrapInner( html.call( this, i ) ); - } ); - } - - return this.each( function() { - var self = jQuery( this ), - contents = self.contents(); - - if ( contents.length ) { - contents.wrapAll( html ); - - } else { - self.append( html ); - } - } ); - }, - - wrap: function( html ) { - var htmlIsFunction = isFunction( html ); - - return this.each( function( i ) { - jQuery( this ).wrapAll( htmlIsFunction ? html.call( this, i ) : html ); - } ); - }, - - unwrap: function( selector ) { - this.parent( selector ).not( "body" ).each( function() { - jQuery( this ).replaceWith( this.childNodes ); - } ); - return this; - } -} ); - - -jQuery.expr.pseudos.hidden = function( elem ) { - return !jQuery.expr.pseudos.visible( elem ); -}; -jQuery.expr.pseudos.visible = function( elem ) { - return !!( elem.offsetWidth || elem.offsetHeight || elem.getClientRects().length ); -}; - - - - -jQuery.ajaxSettings.xhr = function() { - try { - return new window.XMLHttpRequest(); - } catch ( e ) {} -}; - -var xhrSuccessStatus = { - - // File protocol always yields status code 0, assume 200 - 0: 200, - - // Support: IE <=9 only - // #1450: sometimes IE returns 1223 when it should be 204 - 1223: 204 - }, - xhrSupported = jQuery.ajaxSettings.xhr(); - -support.cors = !!xhrSupported && ( "withCredentials" in xhrSupported ); -support.ajax = xhrSupported = !!xhrSupported; - -jQuery.ajaxTransport( function( options ) { - var callback, errorCallback; - - // Cross domain only allowed if supported through XMLHttpRequest - if ( support.cors || xhrSupported && !options.crossDomain ) { - return { - send: function( headers, complete ) { - var i, - xhr = options.xhr(); - - xhr.open( - options.type, - options.url, - options.async, - options.username, - options.password - ); - - // Apply custom fields if provided - if ( options.xhrFields ) { - for ( i in options.xhrFields ) { - xhr[ i ] = options.xhrFields[ i ]; - } - } - - // Override mime type if needed - if ( options.mimeType && xhr.overrideMimeType ) { - xhr.overrideMimeType( options.mimeType ); - } - - // X-Requested-With header - // For cross-domain requests, seeing as conditions for a preflight are - // akin to a jigsaw puzzle, we simply never set it to be sure. - // (it can always be set on a per-request basis or even using ajaxSetup) - // For same-domain requests, won't change header if already provided. - if ( !options.crossDomain && !headers[ "X-Requested-With" ] ) { - headers[ "X-Requested-With" ] = "XMLHttpRequest"; - } - - // Set headers - for ( i in headers ) { - xhr.setRequestHeader( i, headers[ i ] ); - } - - // Callback - callback = function( type ) { - return function() { - if ( callback ) { - callback = errorCallback = xhr.onload = - xhr.onerror = xhr.onabort = xhr.ontimeout = - xhr.onreadystatechange = null; - - if ( type === "abort" ) { - xhr.abort(); - } else if ( type === "error" ) { - - // Support: IE <=9 only - // On a manual native abort, IE9 throws - // errors on any property access that is not readyState - if ( typeof xhr.status !== "number" ) { - complete( 0, "error" ); - } else { - complete( - - // File: protocol always yields status 0; see #8605, #14207 - xhr.status, - xhr.statusText - ); - } - } else { - complete( - xhrSuccessStatus[ xhr.status ] || xhr.status, - xhr.statusText, - - // Support: IE <=9 only - // IE9 has no XHR2 but throws on binary (trac-11426) - // For XHR2 non-text, let the caller handle it (gh-2498) - ( xhr.responseType || "text" ) !== "text" || - typeof xhr.responseText !== "string" ? - { binary: xhr.response } : - { text: xhr.responseText }, - xhr.getAllResponseHeaders() - ); - } - } - }; - }; - - // Listen to events - xhr.onload = callback(); - errorCallback = xhr.onerror = xhr.ontimeout = callback( "error" ); - - // Support: IE 9 only - // Use onreadystatechange to replace onabort - // to handle uncaught aborts - if ( xhr.onabort !== undefined ) { - xhr.onabort = errorCallback; - } else { - xhr.onreadystatechange = function() { - - // Check readyState before timeout as it changes - if ( xhr.readyState === 4 ) { - - // Allow onerror to be called first, - // but that will not handle a native abort - // Also, save errorCallback to a variable - // as xhr.onerror cannot be accessed - window.setTimeout( function() { - if ( callback ) { - errorCallback(); - } - } ); - } - }; - } - - // Create the abort callback - callback = callback( "abort" ); - - try { - - // Do send the request (this may raise an exception) - xhr.send( options.hasContent && options.data || null ); - } catch ( e ) { - - // #14683: Only rethrow if this hasn't been notified as an error yet - if ( callback ) { - throw e; - } - } - }, - - abort: function() { - if ( callback ) { - callback(); - } - } - }; - } -} ); - - - - -// Prevent auto-execution of scripts when no explicit dataType was provided (See gh-2432) -jQuery.ajaxPrefilter( function( s ) { - if ( s.crossDomain ) { - s.contents.script = false; - } -} ); - -// Install script dataType -jQuery.ajaxSetup( { - accepts: { - script: "text/javascript, application/javascript, " + - "application/ecmascript, application/x-ecmascript" - }, - contents: { - script: /\b(?:java|ecma)script\b/ - }, - converters: { - "text script": function( text ) { - jQuery.globalEval( text ); - return text; - } - } -} ); - -// Handle cache's special case and crossDomain -jQuery.ajaxPrefilter( "script", function( s ) { - if ( s.cache === undefined ) { - s.cache = false; - } - if ( s.crossDomain ) { - s.type = "GET"; - } -} ); - -// Bind script tag hack transport -jQuery.ajaxTransport( "script", function( s ) { - - // This transport only deals with cross domain or forced-by-attrs requests - if ( s.crossDomain || s.scriptAttrs ) { - var script, callback; - return { - send: function( _, complete ) { - script = jQuery( " - - - - - - - - - - - - - - - - - -
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    Files used in PDF extraction

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    Configuration file

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    Configuration files may define the PDF processing parameters. -By default, the pdfgetx3 program attempts to read -.pdfgetx3.cfg file from the user HOME directory, -then .pdfgetx3.cfg and pdfgetx3.cfg files -from the current working directory. -If configuration file has a different name, it needs to be specified -with the -c, --config option. -The pdfgetn3 program works in the same way, -except it checks for configuration files -~/.pdfgetn3.cfg, .pdfgetn3.cfg and pdfgetn3.cfg.

    -

    The easiest way of creating a configuration file is to generate -a template content using the --createconfig option as

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    pdfgetx3 --createconfig=test.cfg
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    -
    -

    and then change the generated test.cfg file in your favorite text -editor. The configuration file follows a simple “varname=value” syntax, -any lines starting with “#” are ignored as comments.

    -

    The configuration file has several sections marked as [SECTIONNAME]. -The [DEFAULT] section is mandatory and it contains the default -global settings. Any other sections are optional and they are applied -only when selected with the -s, --section option on the -command line. Thus

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    pdfgetx3 --config=test.cfg --section=nacl
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    -
    -

    would read the parameters from the [nacl] section after reading the -defaults. Having several sections in the configuration -file is useful when there are multiple measurements that share most of -the parameters, but differ in a few of them, for example in chemical -composition. The configuration file can then contain sections per each -sample that define only the composition, while all other parameters are -specified just once in the global DEFAULT section.

    -
    -
    -

    Input files

    -

    PDFgetX3 and PDFgetN3 accept input powder diffraction data -in the form of two-column text file, -where the first column x is either the scattering angle -2Θ in degrees, momentum transfer Q in inverse nanometers or Q -in inverse ångströms. The second column y contains the corresponding -scattered intensities normalized per unit solid angle. The actual type -of the x-values is identified by the dataformat parameter. -The input files may contain header with comments or metadata, and the -actual data are read from the first long section of numerical values.

    -

    The input files are usually passed as command-line arguments to -pdfgetx3 or pdfgetn3 programs and must be paths -accessible from the current working directory.

    -

    Input files can be also defined by setting the inputfile -value in the configuration file. The -d, --datapath -option can be then used to provide additional data directories to -search for these inputs and for the backgroundfile. -This is to support configuration files located in a different -directory than the data.

    -

    When the --find option is active, the pdfgetx3 arguments -are understood as filename patterns and the input files are found -in the current or specified directory.

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    Output files

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    PDFgetX3 and PDFgetN3 can produce up to four different output data files:

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    • .iq – I(Q), the background-corrected -intensities sampled on a regular Q-space grid in inverse ångströms,

      • -

    • .sq – S(Q), the total scattering structure function, -with intensities normalized by average scattering factors and -corrected by a polynomial fit,

      • -

    • .fq – F(Q), the reduced structure function equal to Q(S(Q) - 1),

      • -

    • .gr – G(r), the resultant PDF, where the first column is the -separation r in ångströms and the second is the function G in -Å-2.

      • -
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    You can specify what output files should be produced by setting the -outputtypes parameter in the configuration file or by -passing the -t, --outputtypes on the command line.

    -

    The header of all output files contains the parameter values that were -used in the calculation and thus it is by itself a valid configuration -file. When passed as an argument to the --config option, -the PDFgetX3 will reproduce the previous calculation.

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    Navigation

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    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.2.0/genindex.html b/static_root/doc/pdfgetx/2.2.0/genindex.html deleted file mode 100644 index 0a7077e1..00000000 --- a/static_root/doc/pdfgetx/2.2.0/genindex.html +++ /dev/null @@ -1,839 +0,0 @@ - - - - - - - Index — diffpy.pdfgetx 2.2.0 documentation - - - - - - - - - - - - - - - - - - - -
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    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.2.0/index.html b/static_root/doc/pdfgetx/2.2.0/index.html deleted file mode 100644 index 346e1a8f..00000000 --- a/static_root/doc/pdfgetx/2.2.0/index.html +++ /dev/null @@ -1,188 +0,0 @@ - - - - - - - diffpy.pdfgetx — diffpy.pdfgetx 2.2.0 documentation - - - - - - - - - - - - - - - - - - - - -
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    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.2.0/install.html b/static_root/doc/pdfgetx/2.2.0/install.html deleted file mode 100644 index 3cfa01a8..00000000 --- a/static_root/doc/pdfgetx/2.2.0/install.html +++ /dev/null @@ -1,254 +0,0 @@ - - - - - - - Installation — diffpy.pdfgetx 2.2.0 documentation - - - - - - - - - - - - - - - - - - - - - -
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    Installation

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    Software requirements

    -

    This software is written in Python programming language, therefore -you must have Python 3.10, 3.9, 3.8, 3.7 or 2.7 installed. In addition, -the following third-party Python libraries are also required:

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    • pip - Python package installer

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    • setuptools - tools for installing Python packages

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    • six - Python 2 and 3 compatibility library

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    • NumPy - library for scientific computing with Python

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    • matplotlib - Python plotting library

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    • IPython - enhanced interactive Python shell

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    Standard Python releases can be obtained from -https://www.python.org/downloads. -The third-party libraries can be found at the -Python Package Index -or using any Internet search engine.

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    Another more convenient option is to obtain one of the science-oriented -Python distributions such as -Anaconda Python, -Enthought Canopy or -PythonXY, -These distributions already include all the necessary libraries, so the -required Python software can be all installed in one step.

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    On Linux operating systems the third-party libraries are usually -included in a system software repository. For example on an -Ubuntu Linux computer the software dependencies can be all installed -with a single shell command

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    sudo apt-get install \
-  python3-pip python3-setuptools python3-six \
-  python3-numpy python3-matplotlib ipython3
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    This may be, of course, as well accomplished using the GUI -driven Synaptic package manager. Other Linux -distributions may use different software management tools, -but the names of the necessary packages should be very similar -to those above.

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    On Windows operating system, it may be necessary to add the -C:\Python37 directory and the scripts directory -C:\Python37\Scripts to the system PATH. Some Python -distributions already do so as a part of their installation process. The -easiest way to check is to start the Command Prompt, type -there python and see if this starts the Python interpreter.

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    Alternately, if you want to run the diffpy.pdfgetx software with a specific version of Python, -we recommend using a virtual environment, such as conda. For example, if you have Anaconda Python installed, -you can create a conda virtual environment to install the software as follow

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    conda create --name pdfgetx_env python=3.8 numpy matplotlib ipython
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    You can choose the name of the environment and python version as you desire. You can choose any of the -supported Python versions. Then, activate this environment and follow the instructions in the -next section to install the software

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    conda activate pdfgetx_env
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    Installation

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    The diffpy.pdfgetx software is distributed as a Python wheel file, -which can be obtained from the -Columbia Technology Ventures. -Once all the required software is in -place, start the command prompt on Windows or a Unix terminal on Linux -or Mac, navigate to the directory that contains the wheel file and -execute the following command:

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    pip install ./diffpy.pdfgetx-VERSION.whl
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    Here VERSION needs to be replaced to match the actual filename. It is -critical that pip installer is from a supported Python version otherwise -the program would not work. On Linux and Mac operating systems the installation may need to run with root user privileges, for example, by prepending sudo to the command line above. If root access is not available, use the pip install options --user or --prefix to install the software to a user-writable directory.

    -

    The package provides three programs for PDF conversion, pdfgetx3, pdfgetn3 and pdfgets3. To check if they are correctly installed run

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    pdfgetx3 --version
-pdfgetn3 --version
-pdfgets3 --version
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    This should display the software version, which should agree -with the VERSION string in the wheel package name. -The installation also includes a plotdata -command for an easy plotting of text data files. To verify -if plotdata works, run the plotdata --version command. -Finally, a comprehensive test of the installed software can -be executed using

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    python -m diffpy.pdfgetx.tests.run
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    Note

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    Older versions of diffpy.pdfgetx use Python egg format -instead of Python wheel. -To install these use the easy_install command as follows:

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    python -m easy_install ./diffpy.pdfgetx-VERSION.egg
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    IPython magic command

    -

    These instructions are intended for IPython users who would like to -integrate PDFgetX3, PDFgetN3 and PDFgetS3 into their IPython environment. If -you don’t plan to customize IPython in such way you can safely skip -this paragraph.

    -

    When pdfgetx3 or pdfgetn3 or pdfgets3 is run in interactive mode, it start -IPython interactive shell and define an extra %pdfgetx3, %pdfgetn3 and %pdfgets3 magic commands within the IPython session. The IPython -magic commands are not valid Python code, but work in a similar -fashion as standard shell commands. The %pdfgetx3, %pdfgetn3 and %pdfgets3 magics can be thus used with the same options and arguments as if run from the shell. This is useful for processing more files, while -preserving all plots or variables that were already created -in an IPython session.

    -

    The %pdfgetx3, %pdfgetn3 and %pdfgets3 magic commands can be defined -permanently so they are available in all IPython sessions. To set -this up

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    1. find the profile_default/ipython_config.py file and open it -in a text editor. If that file does not exists, -create it first by executing

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      ipython profile create
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      -
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      2. -

    2. navigate to the paragraph that contains the -c.InteractiveShellApp.extensions and add there -the following line

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      c.InteractiveShellApp.extensions = ['diffpy.pdfgetx.ipy_magics']
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      There must be no leading indent, i.e., the text must start at the -very first column.

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    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.2.0/interact.html b/static_root/doc/pdfgetx/2.2.0/interact.html deleted file mode 100644 index 4a7ff8e5..00000000 --- a/static_root/doc/pdfgetx/2.2.0/interact.html +++ /dev/null @@ -1,390 +0,0 @@ - - - - - - - Interactive mode — diffpy.pdfgetx 2.2.0 documentation - - - - - - - - - - - - - - - - - - - - - -
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    Navigation

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    Interactive mode

    -

    The interactive mode is activated by using either the --i, --interact option or a non-empty ---plot option. In the interactive mode -the program starts an IPython interactive shell and pre-loads several -functions and variables related to the PDF calculation. It also defines -IPython commands %pdfgetx3 and %pdfgetn3, which can be used with -the same syntax as the pdfgetx3 and pdfgetn3 in -system shell. -The interactive session is also initialized with all functions from the -matplotlib.pyplot module for convenient plotting. -The functions and variables related to PDF processing are:

    -
    -
    -pdfgetter(x=None, y=None, filename='', **kwargs)
    -

    Instance of the PDFGetter class which serves as a -low-level function that calculates the PDF. This is a callable -object, which takes as an argument a pair of input arrays for -(Q, intensity) or (2Θ, intensity) depending on -dataformat. It can be also called with a keyword -argument filename=FILE, which would read the input arrays -from the specified file. When called with no arguments, -it calculates PDF from the last input data.

    -
    -
    Parameters
    -
      -

    • x (numpy.ndarray, optional) – -The Q or 2Θ values in powder diffraction pattern.

      • -

    • y (numpy.ndarray, optional) – -The scattered intensities in powder diffraction pattern

      • -

    • filename (str, optional) – -The text data file for loading the x, y values when -they are not specified.

      • -

    • kwargs (misc, optional) – -Extra keyword arguments that are applied to -the config object, for example qmax=20.

      • -
    -
    -
    Returns
    -

    A pair of output arrays (r, G).

    -
    -
    -
    - -
    -
    -config
    -

    Instance of the PDFConfig class that stores the -parameters and input files for the program. -Use print(config) to display the current configuration values. -This is the same object as pdfgetter.config. Configuration -may be changed by setting a respective attribute of the -config object, for example:

    -
    In [1]: config.qmax = 21
-
    -
    -

    The config values may be also changed by calling the -pdfgetter() or processfiles() function with a -corresponding keyword argument, for example -processfiles(qmax=20, force="once").

    -
    - -
    -
    -iraw
    -
    -iq
    -
    -sq
    -
    -fq
    -
    -gr
    -

    These variables are assigned the input raw intensities and the -intermediate results, stored as matrix rows. The matrix rows -correspond to twotheta1, intensity1, twotheta2, intensity2, etc. -Because matrices are iterated row first, the raw intensities -from all input files can be plotted with the matplotlib plot -function as plot(*iraw).

    -

    These variables should be considered read-only and are reset -with subsequent PDF calculations.

    -
    - -
    -
    -tuneconfig(plotids=None, pdfgetter=None, axeslist=None)
    -

    Show a GUI dialog for interactive tuning of configuration variables.

    -
    -
    Parameters
    -
      -

    • plotids – The string or iterable that specify what interactive plots should be -tuned. By default the same as config.plot. It can be also an -integer index or name of a transformation in pdfgetter() or -a reference to a Transformation object.

      • -

    • pdfgetter – The optional PDFGetter object to be tuned. -This is by default the interactive pdfgetter() object.

      • -

    • axeslist – An optional list of matplotlib Axes for showing interactive plots. -When None, use subplot(N, 1, i) to create any necessary axes.

      • -
    -
    -
    -
    -

    Note

    -

    Changes from tuneconfig() apply only to the configuration -and results in memory. Use the processfiles() function -to save them to disk.

    -
    -
    -

    See also

    -

    Interactive tuning of parameters tutorial

    -
    -
    - -
    -
    -processfiles(filename=None, **kwargs)
    -

    Process all input files again with the current configuration values. -This is a higher-level function than pdfgetter(), as -it also saves output files and produces plots as specified by the -config object.

    -
    -
    Parameters
    -
      -

    • filename – One or more input files to be converted to PDFs and saved or -plotted according to the config settings. Use the -previous list of input files when not specified.

      • -

    • kwargs – An optional keyword arguments to set for the config -object, for example (force="once", qmax=18).

      • -
    -
    -
    -

    This function updates the config.inputfiles -list and the iraw, iq, -sq, fq and gr -interactive variables.

    -
    - -
    -
    -clearsession()
    -

    Clear all elements from the config.inputfiles -and also the -iraw, iq, sq, -fq and gr variables.

    -
    -
    Returns
    -

    No return value.

    -
    -
    -
    - -
    -
    -loaddata(filename, minrows=10, usecols=None, **kwargs)
    -

    Find and load data from a text file.

    -

    The data reading starts at the first matrix block of at least minrows rows -and constant number of columns. This seems to work for most of the -datafiles including those generated by PDFGetX2.

    -
    -
    Parameters
    -
      -

    • filename (str) – Name of the file to load the text data from.

      • -

    • minrows (int, optional) – Minimum number of rows in the first data block, by default 10. -All rows must have the same number of floating point values.

      • -

    • usecols (int, str, slice, iterable, optional) – Indices or names of the columns to be loaded from the data block, -the default is all columns. Data blocks that do not contain -sufficient number of columns are skipped. When usecols contain -string items, they are translated to column indices by looking -up a header line preceding the data block. String items formatted -as i:j:k are converted to slice objects. When usecols type -is string it is split to a list of names at comma and whitespace -characters.

      • -

    • unpack (bool, optional) – Return data as a sequence of columns that allows tuple unpacking -such as x, y = loaddata(FILENAME, unpack=True). Note that -transposing the loaded array as loaddata(FILENAME).T has -the same effect. The default is False.

      • -

    • kwargs (misc, optional) – Extra keyword arguments that are passed to numpy.loadtxt.

      • -
    -
    -
    Returns
    -

    data (numpy.ndarray) – The data block loaded from the text file.

    -
    -
    -
    -

    See also

    -

    numpy.loadtxt

    -
    -

    This function can be imported from the -diffpy.pdfgetx module.

    -
    - -
    -
    -plotdata(filenames, style=None, x=None, y=None, log=None, ax=None, **kwargs)
    -

    Plot one or more text data files.

    -

    The files are searched for data blocks which have enough columns -to satisfy both x and y selectors of the plotted data. This -may result in an empty plot when file has none wide-enough data -block (e.g., when y=100).

    -
    -
    Parameters
    -
      -

    • filenames (str or an iterable of string file names) – One or more text data files to be plotted.

      • -

    • style (str) – Optional style argument for the matplotlib plot() function.

      • -

    • x (int, str, or iterable, optional) – The column to be used for the x data. This can be a zero-based -index of the desired column or a column name from data header. -A special symbol “.” can be used for a sequential data index. -When not specified, use the first column.

      • -

    • y (int, str, iterable, or slice, optional) – One or more columns to be used for the y data. This can be -a single zero-based index of the desired column or an iterable -of several indices. The y value can be also a string which -is split at commas and converted to integers, column names -or slice objects, e.g. “0,sine,4:7”. The slice instances -are applied to the entire data block from each loaded file. -Use the second column when not specified.

      • -

    • log ({‘x’, ‘y’}, optional) – Set logarithmic scaling for the specified axis and linear scaling -for all others. For example, log="y" applies linear scaling -to the x-axis and logarithmic to the y-axis. Keep the current -axis scaling when not specified.

      • -

    • ax (matplotlib.axes.Axes, optional) – The axes to plot to. The plotting will be performed using the -ax.plot method. The default is pyplot.gca().

      • -

    • kwargs (misc, optional) – Keyword arguments for the matplotlib plot() function.

      • -
    -
    -
    Returns
    -

    lines (list) – The matplotlib Line2D objects added to the current axis.

    -
    -
    -
    -

    See also

    -

    diffpy.pdfgetx.loaddata

    -
    -

    This function can be imported from the -diffpy.pdfgetx.plotdata module.

    -
    - -
    -
    -findfiles(patterns=(), path='.', dotfiles=False)
    -

    Find files that match all specified patterns.

    -

    Pattern syntax:

    -
      -

    • ^start - match “start” only at the beginning of the string.

      • -

    • end$ - match “end” only at the end of string.

      • -

    • <7> - match number 7 preceded by any number of leading zeros.

      • -

    • <1-34> - match an integer range from 1 to 34 inclusive.

      • -

    • <7-> - match an integer greater or equal 7.

      • -

    • <-> - match any integer.

      • -

    • + - start a new group of patterns to match more files.

      • -

    • dir/ - set search path effective from the current pattern group.

      • -
    -

    All integer ranges <N-M> above allow one or more leading zeros. -The range syntax does not support matching of negative numbers.

    -
    -
    Parameters
    -
      -

    • patterns (iterable of strings or str, optional) – String patterns that must all match in returned filenames. -Can be also a single string with patterns separated by -whitespace characters. When empty match all files in the -current directory or in the path. A single + starts -a new pattern group for additional matches. Each pattern -group may have one entry containing /, for example, -dir/ or ./, which sets the search directory for -this and subsequent pattern groups. When pattern group -contains only the path entry it reuses file patterns from -the previous group.

      • -

    • path (str, optional) – Directory to be searched for the files. The default is “.” -to search the current directory.

      • -

    • dotfiles (bool, optional) – When True search also the hidden “.” starting files. These -files are by default ignored, but can be explicitly selected -by adding the ^. pattern.

      • -
    -
    -
    Returns
    -

    filenames (list) – The list of matching filenames. Return all files when -patterns are not specified.

    -
    -
    -

    This function can be imported from the -diffpy.pdfgetx module.

    -
    - -
    - - -
    -
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    -
    - -
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    -
    -

    Navigation

    - -
    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.2.0/intro.html b/static_root/doc/pdfgetx/2.2.0/intro.html deleted file mode 100644 index 638c5b6f..00000000 --- a/static_root/doc/pdfgetx/2.2.0/intro.html +++ /dev/null @@ -1,184 +0,0 @@ - - - - - - - Introduction — diffpy.pdfgetx 2.2.0 documentation - - - - - - - - - - - - - - - - - - - - - -
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    Navigation

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    Introduction

    -

    diffpy.pdfgetx is a simple yet powerful software for converting X-ray or -neutron powder diffraction data to atomic Pair Distribution Functions -(PDFs). In addition, it also allows the extraction of PDFs from small-angle -scattering (SAS) data. The software includes three command line programs -PDFgetX3, PDFgetN3 and PDFgetS3 for processing X-ray, -constant-wavelength neutron and small-angle diffraction data -respectively. PDFgetX3, PDFgetN3 and PDFgetS3 can be used in a batch -mode to convert a series of data files without user intervention. The -programs can be also run in an interactive mode that allows to control -process parameters and plot the PDFs and any intermediate results. Users -can interactively tune the PDF processing parameters, visualize their effect on the results and adjust them to their optimum values. The programs are bundled with Python library diffpy.pdfgetx for PDF processing functions, which can be used in custom Python scripts.

    -
    -

    License notice

    -

    Use of this software is subject to and permitted only under a separate, -written Use License granted by Columbia University. If you or your employer -is not a party to such an agreement, then your use of this software is -prohibited. If you don’t know whether or not your anticipated use is under -a license, you must contact Prof. Simon Billinge at sb2896@columbia.edu. -Use of this software without a license is prohibited.

    -

    Copyright 2009-2020, Trustees of Columbia University in the City of New York.

    -

    For more information please email Prof. Simon Billinge at sb2896@columbia.edu

    -
    -
    -

    Authors

    -

    This code was written by members of the Billinge Group at -Columbia University and Brookhaven National Laboratory including -Pavol Juhás, -Timur Davis, -Chia-Hao (Timothy) Liu, -Christopher Wright, -Christopher Farrow, -Connor J. Bracy, -Hung Vuong, -Songsheng Tao, -Simon Billinge.

    -
    -
    -

    References

    -

    If you use this program for a scientific research that leads -to publication, we ask that you acknowledge use of the program -by citing the following paper in your publication:

    -
    -

    P. Juhás and T. Davis, C. L. Farrow, S. J. L. Billinge -PDFgetX3: A rapid and highly automatable program for processing -powder diffraction data into total scattering pair distribution -functions, -J. Appl. Crystallogr. 46, 560-566 (2013)

    -
    -

    For research publications that use this software to process neutron -diffraction data we ask you to also cite:

    -
    -

    P. Juhás, J. N. Louwen, L. van Eijck, E. T. C. Vogt, -S. J. L. Billinge -PDFgetN3: atomic pair distribution functions from neutron -powder diffraction data using ad hoc corrections, -J. Appl. Crystallogr. 51 (2018)

    -
    -

    For research publications utilising the sasPDF utility, PDFGetS3, we ask you to acknowledge the use of the program by citing following paper in your publication:

    -
    -

    CH Liu, E. Janke, R. Li, P. Juhás, O. Gang, D. V. Talapin, S. J. L. Billinge -sasPDF: pair distribution function analysis of nanoparticle assemblies from small-angle-scattering data.

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    Navigation

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    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.2.0/options.html b/static_root/doc/pdfgetx/2.2.0/options.html deleted file mode 100644 index 5b4df7c2..00000000 --- a/static_root/doc/pdfgetx/2.2.0/options.html +++ /dev/null @@ -1,670 +0,0 @@ - - - - - - - Options and parameters — diffpy.pdfgetx 2.2.0 documentation - - - - - - - - - - - - - - - - - - - - - -
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    Navigation

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    Options and parameters

    -

    PDFgetX3, PDFgetN3 and PDFgetS3 are very flexible in allowing users to customize -the actions of the program. They have a number of parameters that can -be specified either in configuration file or as command line options. -Here is a complete description of the parameters and options used by -either program.

    -
    -

    Note

    -

    The command line options start with a leading “-” and can -be only used as command line arguments when starting the -pdfgetx3 program. Within configuration file the parameter -names are plain words without any leading dashes. Finally, -parameters can be also set in the interactive mode as attributes of -the config object, but the assignments must be valid -Python statements. Here are examples of setting composition of -a processed specimen using each of these forms:

    -
      -

    1. assigned in configuration file:

      -
      ...
-composition = CaTiO3
-...
-
      -
      -
      2. -

    2. set as a command-line option when starting pdfgetx3 or -pdfgetn3:

      -
      pdfgetx3 --composition=CaTiO3
-
      -
      -
      3. -

    3. set in the IPython interactive mode:

      -
      pdfgetx3 -i
-...
-In [1]: config.composition = "CaTiO3"
-
      -
      -
      4. -
    -
    -
    -

    Program operation

    -
    -
    --h, --help
    -

    Display a brief usage information with a list of command line options -and exit.

    -
    - -
    -
    --V, --version
    -

    Display the program version and exit.

    -
    - -
    -
    ---manual
    -

    Open this manual in a Web browser and exit.

    -
    - -
    -
    --f, --find
    -
    - -
    -

    Select input files that match all patterns. The command -line arguments are by default taken as input files. However, -with the --find option they are processed as -file patterns and the matching files are then used as inputs. -The input files are by default searched in the current directory -unless there is a path entry (e.g., data/) that -selects a different search path. The search patterns are -interpreted as fixed strings, all of which must be present -in the file name. A single argument + starts -a new group of patterns to match more files that are not -covered by one set of patterns. Additional pattern -groups reuse the current search path unless they provide -their own path value. Pattern groups containing only -a path entry reuse file patterns from the last group. -When pattern groups overlap the repeated matches are ignored -to make the resulting list of files unique. Files starting -with . are ignored unless there is ^. pattern -that explicitly matches them. The search -syntax provides the following special patterns:

    - ---- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

    ^

    match at the beginning of the string, i.e., ^start -matches only filenames that start with “start”.

    $

    match at the end of string, for example, .chi$ selects -file names ending with “.chi”. A $ on its own -matches every string and can be used to select all files.

    <N>

    match number N preceded by any number of leading zeros, -e.g., <7> would match in “f7.chi”, “f007.chi”, but not -in “f77.chi”.

    <N-M>

    match an integer range from N to M inclusive. -The matched number may have one or more leading zeros.

    <7->

    match number 7 or larger.

    <-7>

    match number 7 or smaller.

    <->

    match any integer number.

    +

    start a new pattern group, for example, .chi$ + .dat$

    /

    set search path. An argument containing the / symbol -is taken as the search path, for example, data/ or -./. Each pattern group may provide its own search -path effective for that and any subsequent pattern group.

    -

    The ^$<> characters are often special to Unix or Windows -command shells, therefore they need to be enclosed in double -quotes (\”) when used on command line.

    -
    -

    See also

    -

    tutorial on matching input files

    -
    -
    -
    -
    --l, --list
    -

    List all input files and exit. This is useful with the ---find option to verify if input files -are matched as intended.

    -
    - -
    -
    -

    Configuration file options

    -
    -
    --c CONFIG, --config=CONFIG
    -

    Read custom configuration file after loading the default ones. -Do not load any configuration file when “NONE”.

    -
    - -
    -
    --s NAME, --section=NAME
    -

    Load the custom configuration file section [SectionName] after -loading the [DEFAULT] section. This is useful for creating -several configuration variants in a single configuration file.

    -
    - -
    -
    ---createconfig=FILE
    -

    Write template configuration to a new FILE and exit. Write -to the standard output when FILE is “-“.

    -
    - -

    See also the configuration file section -for further details.

    -
    -
    -

    Input and output options

    -
    -
    -inputfile
    -

    This parameter allows to specify one or more input files in the -configuration file, one file per line. The inputfile -is only used if no input files were provided on the -pdfgetx3 or pdfgetn3 command line.

    -
    - -
    -
    -dataformat
    -
    - -
    -
    ---format=FORMAT
    -

    Format of input files. Available formats are: twotheta, QA, -Qnm corresponding to a two-column text data where the first -column is either the scattering angle 2Θ in degrees, Q in -inverse ångströms or Q in inverse nanometers.

    -
    - -
    -
    -backgroundfile
    -
    - -
    -
    --b FILE, --background=FILE
    -

    Optional datafile with background intensities from an empty sample -holder. It must be in the same dataformat as other input files.

    -
    - -
    -

    Note

    -

    The following input is only used in sas mode.

    -
    -
    -
    -formfactorfile
    -
    - -
    -
    --ff FILE, --formfactorfile=FILE
    -

    Form factor intensities of the scatterers. This is required for sas mode. The form factor file is expected to be in two-column format with (Q, f2avg) data or three-column format with (Q, f2avg, favg2) data. The unit of Q is required to be A^-1.

    -
    - -
    -
    -datapath
    -
    - -
    -
    --d DATAPATH, --datapath=DATAPATH
    -

    One or more extra directories to be searched for input or -background data files. The -d option can be specified -several times to add more directories, these are prepended in front -of any default value. Within configuration file the datapath -directories have to be listed each on a separate line.

    -

    A special value “NONE” (or “none”) clears any previously defined -paths and only the further paths, if any, would be searched for -inputs.

    -
    - -
    -
    -output
    -
    - -
    -
    --o OUTPUT, --output=OUTPUT
    -

    Output file name, write to the standard output when “-“. The --t, --outputtypes option controls what results are -being saved. Normally the OUTPUT is used as a custom basename for -the output files. The OUTPUT may contain @f, @h, @r, @e, @t, @b, @o -tokens, which are expanded as follows:

    - ----- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

    token

    example

    definition

    @h

    dir1/dir2

    the input file directory or “.”

    @r

    dir1/dir2/filename

    the input path with extension removed

    @e

    dat

    the input file extension without “.”

    @t

    filename.dat

    the tail component of the input file

    @b

    filename

    the tail component with extension removed

    @o

    gr

    the output extension iq, sq, fq or gr

    -

    An empty value works the same as “@b.@o” and saves the data -in the current directory with a proper extension for the -saved results. When “@o” is not present in the OUTPUT, it is -appended as a default filename extension.

    -
    - -
    -
    -outputtypes
    -
    - -
    -
    --t TYPES, --outputtypes=TYPES
    -

    Result types to be saved, one or more comma separated values. -Supported values are “iq”, “sq”, “fq”, “gr”, corresponding to the -I(Q), S(Q), F(Q) and G(r) curves; these are also used as output -file extensions.

    -

    Result files are not written when empty, “none” or “NONE”.

    -
    - -
    -
    -force
    -
    - -
    -
    ---force=FORCE
    -

    Overwrite existing output files. By default the output -files are not written if they already exist. Possible values -in a configuration file are “true”, “yes”, “on”, “1” or -“false”, “no”, “off”, “0” or “once”. The special value “once” -permits one overwrite and then resets config.force to -False. Note that in interactive mode the values assigned -to config.force are converted to Python bool -unless equal to “once”.

    -
    - -
    -
    -

    PDF parameters

    -
    -
    -mode
    -
    - -
    -
    ---mode=STRING
    -

    The PDF conversion mode, i.e., the name of the -pdfgetter() setup. The available modes correspond -to the radiation type used in powder diffraction experiment and can -be “xray” or “neutron”.

    -
    - -
    -
    -wavelength
    -
    - -
    -
    --w FLOAT, --wavelength=FLOAT
    -

    X-ray wavelength in ångströms. This value is required -for the “twotheta” dataformat in order to convert the scattering -angles 2Θ to a momentum transfer Q. For other data formats -the wavelength is not necessary and may be left undefined.

    -
    - -
    -
    -twothetazero
    -
    - -
    -
    ---twothetazero=FLOAT
    -

    Position of the zero scattering angle in diffractometer degrees. -This parameter corrects for a constant offset in the -measured 2Θ values. When loading configuration file -it is assumed 0 unless specified otherwise. This parameter -is only effective for the “twotheta” dataformat.

    -
    - -
    -
    -composition
    -
    - -
    -
    ---composition=STRING
    -

    Chemical composition of the sample. Supported formats are -“PbTi0.5Zr0.5O3”, “Pb 1 Ti 1/2 Zr 1/2 O 3” or “CH3 (CH2)3 OH”. -Space characters are ignored, unit counts can be omitted, but it is -important to use a proper upper and lower case in atom symbols. -Elements can appear several times in the formula, e.g., “CH3 CH3”, -and the formula may contain parentheses or fractional -stoichiometries.

    -
    - -
    -
    -bgscale
    -
    - -
    -
    ---bgscale=FLOAT
    -

    Scaling of the background intensities loaded from the -backgroundfile, by default 1.

    -
    - -
    -
    -rpoly
    -
    - -
    -
    ---rpoly=FLOAT
    -

    r-limit for the maximum frequency in the F(Q) correction polynomial. -The PDF is unreliable at shorter r, however a -very small rpoly would disable polynomial correction and -give noisy PDF. -Larger values produce closer fits with a higher degree polynomial, -but when too large, they might smooth-out a useful signal in the -data. The default is 0.9.

    -
    - -
    -
    -qmaxinst
    -
    - -
    -
    ---qmaxinst
    -

    The Q cutoff for the meaningful input intensities in inverse -ångströms. Some data files may contain trailing zeros -or unreliable intensities at the upper bound of the detector range. -The qmaxinst defines a threshold for unreliable data. -The parameter is also used as an upper boundary for the polynomial -fit correction of the S(Q) data.

    -
    - -
    -
    -qmin
    -
    - -
    -
    ---qmin
    -

    The lower Q-limit for the Fourier transformation of the F(Q) curve -in inverse ångströms.

    -
    - -
    -
    -qmax
    -
    - -
    -
    ---qmax
    -

    The upper Q-limit for the Fourier transformation of the F(Q) curve -in inverse ångströms. This is essentially a limit, where sample -signal decays to the level of data noise.

    -
    - -
    -
    -rmin
    -
    - -
    -
    ---rmin=FLOAT
    -

    Lower bound of the r-grid for the calculated PDF in ångströms.

    -
    - -
    -
    -rmax
    -
    - -
    -
    ---rmax=FLOAT
    -

    Upper bound of the r-grid for the calculated PDF in ångströms.

    -
    - -
    -
    -rstep
    -
    - -
    -
    ---rstep=FLOAT
    -

    Spacing of the r-grid for the calculated PDF in ångströms.

    -
    - -
    -
    -

    Other parameters

    -
    -
    -plot
    -
    - -
    -
    --p TYPES, --plot=TYPES
    -

    Plot the specified results. A comma separated list with one or -more items from “iq”, “sq”, “fq”, “gr”. No plot is produced when -empty, “none” or “NONE”. Setting this option turns on the -interactive mode.

    -
    - -
    -
    -interact
    -
    - -
    -
    --i, --interact
    -

    Start an IPython interactive session after processing all files. -Useful for tuning the configuration parameters or interactive -plotting. This is always on when plot option has been set. -See also Interactive mode for further details.

    -
    - -
    -
    -verbose
    -
    - -
    -
    ---verbose=VALUE
    -

    Level of detail for the program to report about its actions. -Possible values are “error”, “warning”, “info”, “debug”, “all” or an -integer number from 0 to 5. Messages are completely suppressed when -0, all messages are printed when verbose is 5 (“all”) or higher. -This option is useful for diagnostics of any unexpected behavior -in the program.

    -
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    Navigation

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    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.2.0/pdfgetxn3-examples.zip b/static_root/doc/pdfgetx/2.2.0/pdfgetxn3-examples.zip deleted file mode 100644 index 50d1936c..00000000 Binary files a/static_root/doc/pdfgetx/2.2.0/pdfgetxn3-examples.zip and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.2.0/plotdata.html b/static_root/doc/pdfgetx/2.2.0/plotdata.html deleted file mode 100644 index e7dfa074..00000000 --- a/static_root/doc/pdfgetx/2.2.0/plotdata.html +++ /dev/null @@ -1,285 +0,0 @@ - - - - - - - The plotdata program — diffpy.pdfgetx 2.2.0 documentation - - - - - - - - - - - - - - - - - - - - - -
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    Navigation

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    The plotdata program

    -

    The PDFgetX3 software includes a simple stand-alone utility -plotdata for plotting text data files. In most cases -this program can be invoked from a command-shell as

    -
    plotdata file1.dat file2.dat
-
    -
    -

    which plots the numerical data from the text files file1.dat, -file2.dat together in a single graph. By default the first -column is used as an x variable and the second column is used for the -y values. After displaying the plot the program starts an IPython -interactive session allowing the user to modify or save plots. The -IPython session is initialized with the filenames variable -containing a list of plotted files. It also pre-loads the -plotdata() and findfiles() functions just as in PDFgetX3 -interactive session. The plotdata() -function works in a similar way as the plotdata program, -just its arguments need to be passed as Python function arguments -instead of command-line options. Thus an equivalent call of the -plotdata() function would be:

    -
    In [1]: plotdata(['file1.dat', 'file2.dat'])
-
    -
    -
    -

    Selecting files

    -

    The plotdata program includes a file searching feature -that is useful for selecting a set of files in large -directories. It is also convenient for Windows operating systems, -where the command prompt cannot do filename expansion for patterns -such as *.dat. The file search feature is controlled by the -following options:

    -
    -
    --f, --find
    -

    Use command line arguments as filename patterns and plot all matching -files. This option works in the same way as for -pdfgetx3, for full details see the -pdfgetx3 --find documentation. Note that -within command line the special patterns ^$<> need to be quoted -in double quotes (\”) so they are not processed by command shell.

    -
    - -
    -
    --l, --list
    -

    List the input files and exit. This is useful in conjunction -with the -f, --find option to check if data files -are selected as intended.

    -
    - -

    Assuming the current directory contains 20 files named -file1.dat, file2.dat, …, file20.dat, -the plotting of files 9 to 13 could be done (with a check listing) -as follows

    -
    $ plotdata -fl "<9-13>.dat"
-file9.dat
-file10.dat
-file11.dat
-file12.dat
-file13.dat
-$ plotdata -f "<9-13>.dat"
-
    -
    -

    Within an interactive IPython session the equivalent plot could be -produced by combining the plotdata() and findfiles() functions as

    -
    In [1]: plotdata(findfiles("<9-13>.dat"))
-
    -
    -
    -
    -

    Selecting x and y data

    -

    The plotdata program provides several ways of selecting -columns for x or y data and for specifying plot markers or line -formats. The columns can be specified using their integer index, -but one needs to keep in mind the index of the first column is “0” -as per Python indexing conventions. Here is a list of options -supported by the plotdata program (and function):

    -
    -
    --x X
    -

    index or name of the x-column to plot. See the -y option -for the supported syntax, but note that X may select only one -column. When set to “.” use the data-row index for x.

    -
    - -
    -
    --y Y
    -

    index or name of the y-column or columns to plot. The Y column -specification can be a comma separated list of indices, column names -or Python-like ranges, for example “1,2”, “G”, “1:4” (START:STOP, -same as “1,2,3”), “1:4:2” (START:STOP:STEP, same as “1,3”), or -“-2:” (same as “-2,-1”, i.e, the last 2 columns). Because column -indexing starts at “0” the second column must be specified as “1”.

    -

    The column names work if the data section in the file is preceded by -a headline of unique column names, for example:

    -
    x     square      cube
-1     1           1
-2     4           8
-3     9           27
-4     16          64
-
    -
    -

    For such data file the plotdata program will recognize column names -“x”, “square” and “cube” and an implicit “.” for row index.

    -
    - -
    -
    --s STYLE, --style=STYLE
    -

    optional plot format specification. See the -matplotlib.pyplot.plot() function -for a list of available formats.

    -
    - -
    -
    --L LOG, --log=LOG
    -

    axes to be plotted with logarithmic scaling, for example, “x”, “y” or -“xy”. Axes not listed in LOG will use linear scaling.

    -
    - -
    -
    --h, --help
    -

    display a brief usage info and exit.

    -
    - -
    -
    --V, --version
    -

    show program version and exit.

    -
    - -
    -
    ---manual
    -

    Open this manual page in a Web browser and exit.

    -
    - -
    -
    -

    Examples

    -

    The examples directory plotdata contains a sincos.dat -file that has 3-columns of values labeled as “x”, “sin” and “cos”. -Here are several examples of the plotdata capabilities -when used from command line - the user is encouraged to try them out:

    -
    plotdata sincos.dat
-plotdata -y 1,2 sincos.dat
-plotdata -x . -y 0:3 sincos.dat
-plotdata -y cos sincos.dat
-plotdata -x sin -y cos -sr-- sincos.dat
-
    -
    -

    An equivalent usage from a general IPython session would be:

    -
    ipython --matplotlib=auto
-In [1]: from diffpy.pdfgetx.plotdata import plotdata
-In [2]: plotdata('sincos.dat')
-In [3]: plotdata('sincos.dat', y=[1,2])
-In [4]: plotdata('sincos.dat', x='.', y=':3')
-In [5]: plotdata('sincos.dat', y='cos')
-In [6]: plotdata('sincos.dat', x='sin', y='cos', style='r--')
-
    -
    -
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    Navigation

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    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.2.0/quick-start.html b/static_root/doc/pdfgetx/2.2.0/quick-start.html deleted file mode 100644 index 8d8864df..00000000 --- a/static_root/doc/pdfgetx/2.2.0/quick-start.html +++ /dev/null @@ -1,257 +0,0 @@ - - - - - - - Quick-start guide — diffpy.pdfgetx 2.2.0 documentation - - - - - - - - - - - - - - - - - - - - - -
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    Navigation

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    Quick-start guide

    -

    This guide assumes that the software has been correctly installed and -its command line programs PDFgetX3, PDFgetN3 and PDFgetS3 can be -executed by typing pdfgetx3, pdfgetn3, or -pdfgets3 in a shell window. Please, refer to the installation section if this is not working yet.

    -
    -

    pdfgetx3 command

    -

    The pdfgetx3 program is a command-line application, therefore all -the input files and run-parameters are supplied either as command-line -arguments or through a configuration file. In general, the pdfgetx3 is -executed from a command shell as

    -
    pdfgetx3 [options] input1 input2 ... inputN
-
    -
    -

    The inputN stands for an input powder diffraction data. The -inputN file is a simple two-column text file, where the first -column corresponds to either the 2Θ diffraction angle, or a -momentum transfer, Q, in inverse nanometer or inverse ångström units. -The second column contains the corresponding X-ray intensities. The -input file may start with a header containing comments or metadata -related to the measurement. PDFgetX3 will ignore any text leading to a -long two-column section. The example input files in this manual were -created with the -FIT2D program using -its “chi” output format, thus we will also refer to them as “chi-files”. -A typical content of a “chi” file looks as folows:

    -
    Pt_bulk-00055.tif: 2-theta Scan
-2-Theta Angle (Degrees)
-
-       1465
- 2.0003892E-02  0.0000000E+00
- 6.0011677E-02  0.0000000E+00
- 1.0001946E-01  0.0000000E+00
- 1.4002724E-01  0.0000000E+00
- 1.8003502E-01  0.0000000E+00
- ...
-
    -
    -

    The command-line options are arguments that start with a dash “-” and -are used to specify run-parameters or modify the program behavior. The -options can be specified in a short form that consists of a dash and -a single character, or in a long, more descriptive format starting with -a doubled dash --. Options may require values. For short options, -the value may be joined to the option string, for example --w0.142774, while for the long options it has to be separated -with an equal sign, e.g., --wavelength=0.142774. Although -all the PDF calculation parameters can be passed as command line -options, it is often more convenient to set them in a configuration -file. When run parameter is present both in a configuration file and -as command-line option, the command-line value takes precedence. The -command-line options are all described in the Options and parameters section of -this manual. A brief summary of options can be also displayed by -executing

    -
    pdfgetx3 --help
-
    -
    -

    The best way of getting familiar with PDFgetX3 is to process -the example diffraction data described in the Tutorial. -In general, the first step is to create a commented configuration file pdfgetx3.cfg using:

    -
    pdfgetx3 --createconfig=pdfgetx3.cfg
-
    -
    -

    The configuration file can have any name, but it is preferable -to use either pdfgetx3.cfg or .pdfgetx3.cfg, -for these files are automatically loaded by PDFgetX3. All -other configuration files must be passed explicitly to the program -using the -c, --config option.

    -

    Open the pdfgetx3.cfg file in a text editor. The lines that -start with a hash mark # are comments and are not used. The lines -starting with a right brace [ denote sections in the configuration -file. The active lines are all formatted as -“NAME=VALUE”. Although PDFgetX3 has many options, in general only a few -of them are critical for the PDF calculation:

    -
      -

    • dataformat – specifies the input data format

      • -

    • wavelength – radiation wavelength in Å required for the -“twotheta” format.

      • -

    • composition – chemical composition of the sample

      • -

    • qmaxinst – upper Q boundary for a meaningful measurement -intensities.

      • -

    • qmax – Q-cutoff for the Fourier transformation that -yields the PDF.

      • -
    -

    Save the updated configuration file and run pdfgetx3 on the input data -FILENAME.chi as

    -
    pdfgetx3 --verbose=info -t gr FILENAME.chi
-
    -
    -

    Here the --verbose=info option makes pdfgetx3 -print -more information about its operation. This helps to verify -if the configuration file is indeed loaded and if the parameter -values are assigned as intended. The PDFgetX3 will not write -any output files unless told so. The -t gr option -tells the program to save the final G(r) curve as a -FILENAME.gr file in the working directory.

    -

    The saved .gr file contains a header with all the calculation -parameters and the input file name. The .gr file can be therefore -also used as a configuration file in order to redo the same -calculation

    -
    pdfgetx3 -c FILENAME.gr --plot=fq,gr
-
    -
    -

    Note this command does not include any .chi file and this will as -a result process the previously used input FILENAME.chi. -The --plot=fq,gr option tells PDFgetX3 to -display 2 plots for the reduced structure function F(Q) and the -final PDF G(r). The --plot option also implies an -interactive mode -therefore the program does not exit, but starts an -interactive IPython session. To exit the interactive mode, -type exit() and press Enter.

    -
    -
    -

    pdfgetn3 command

    -

    The pdfgetx3 and pdfgetn3 programs operate in a very similar fashion -apart from being set to assume X-ray and neutron data respectively. -The type of the scattering data can be also specified using the ---mode option. Running pdfgetn3 is nearly identical -to executing pdfgetx3 --mode=neutron. The only difference between -these commands is that pdfgetx3 checks for configuration files -pdfgetx3.cfg and .pdfgetx3.cfg, whereas -pdfgetn3 looks for pdfgetn3.cfg and .pdfgetn3.cfg.

    -
    -
    -

    pdfgets3 command

    -

    The pdfgets3 program is virtually the same as its counterparts for x-ray -(pdfgetx3) and neutron (pdfgetn3) diffraction data. The only difference -is that instead of referencing the well documented x-ray or neutron -scattering form factor data, a user-defined form factor data is used -for getting the PDF from a small-angle scattering (SAS) data. This -behavior is enabled by specifying mode = sas in the configuration -file or in the command line tool. The pdfgets3 program by default -searches for a configuration named pdfgets3.cfg and -.pdfgets3.cfg in order, when no configuration file is specified.

    -

    Please refer to the tutorial section for a step-by-step processing of the example data files and for demonstration of the capabilities in PDFgetX3, PDFgetN3 and PDFgetS3.

    -
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    Navigation

    - -
    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.2.0/release.html b/static_root/doc/pdfgetx/2.2.0/release.html deleted file mode 100644 index 0eff93b1..00000000 --- a/static_root/doc/pdfgetx/2.2.0/release.html +++ /dev/null @@ -1,414 +0,0 @@ - - - - - - - Release notes — diffpy.pdfgetx 2.2.0 documentation - - - - - - - - - - - - - - - - - - - - -
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    Release notes

    -
    -

    Version 2.2.0 - 2022-02-10

    -
    -

    Added

    -
      -

    • Support for Python 3.10

      • -

    • Support for Python 3.9

      • -

    • Unittests for testing CLI functionality.

      • -

    • Tutorial example for multiple background subtractions (see -diffpy.pdfgetx/doc/examples/Multiple_Background_Subtraction).

      • -

    • New functionality for allowing multiple backgrounds to be subtracted from a -dataset accessed via using the plural name equivalent of any previously -singularly named variable (i.e., bgscale->bgscales, backgroundfile-> -backgroundfiles, etc.) in both static config files (i.e., *.cfg) and -interactive plotting sessions. Each set of parameters corresponding to a -given background subtraction can also be manipulated by a set of sliders -present in the tuneconfig window of an interactive shell session. In total, -the multiple background subtraction functionality should work identically to -the previous single background subtraction functionality except that the -multiple background files and initial scale values cannot be specified -through a pure CLI command (i.e., it must be specified either in a config file -or added/modified during an interactive plotting session).

      • -

    • Added extra test cases for testing the PDFGetter class.

      • -

    • Added extra test cases for testing the PDFConfig class.

      • -
    -
    -
    -

    Changed

    -
      -

    • Changed python versions specified in requirements.txt files to be in the -range of the respective minor version rather than fixed to the Python X.Y.0 -version

      • -

    • Python version support policy now follows NEP 29

      • -

    • Changed versions used in conda-recipe/build.sh to reflect currently -supported Python versions.

      • -

    • Changed Sphinx dependency m2r to m2r2.

      • -

    • Added Connor J. Bracy and Zach Thatcher to contributors in AUTHORS.txt

      • -

    • Added Connor J. Bracy to internal authors list and PDFgetXNS3_manual.pdf

      • -
    -
    -
    -

    Removed

    -
      -

    • Support for Python 3.5 and 3.6.

      • -
    -
    -
    -
    -

    Version 2.1.2 - 2021-12-24

    -
    -

    Fixed

    -
      -

    • Fixed the command provided to the users in the installation instructions which -incorrectly instructed them to setup a Python environment in which pdfgetx -could be installed by using the flag --python=3.8 to the correct usage of -this flag as python=3.8.

      • -
    -
    -
    -
    -

    Version 2.1.1 - 2020-09-01

    -
    -

    Added

    -
      -

    • Support for Python 3.8

      • -
    -
    -
    -
    -

    Version 2.1.0 – 2020-07-15

    -
    -

    Added

    -
      -

    • New mode sas for processing Small Angle Scattering data and -for using custom scattering factors.

      • -

    • qmax-pushes-qmin coupling of sliders in the tuneconfig tool.

      • -

    • New program pdfgets3 and IPython magic %pdfgets3.

      • -
    -
    -
    -

    Changed

    -
      -

    • Software distribution format to a universal Python wheel.

      • -

    • tuneconfig dialog to access full Q-range with all qmin, qmax, and -qmaxinst sliders. Increased range for the rpoly slider.

      • -
    -
    -
    -

    Deprecated

    -
      -

    • Software distribution in setuptools egg package.

      • -
    -
    -
    -

    Removed

    -
      -

    • Support for Python 3.4.

      • -
    -
    -
    -

    Fixed

    -
      -

    • Support backslash in the --find option path argument on Windows. -Both forward and back slashes are allowed on Windows, but other -platforms must use forward slash.

      • -

    • Recipe for platform-dependent Anaconda package.

      • -

    • Bogus test failure when installed in symlinked directory.

      • -
    -
    -
    -
    -

    Version 2.0.0 – 2018-11-02

    -
    -

    Added

    -
      -

    • New mode neutron for processing constant-wavelength -neutron scattering data.

      • -

    • Correction for an offset of diffractometer zero angle.

      • -

    • Configuration parameter twothetazero and command-line option ---twothetazero for position of the actual zero angle -in diffractometer degrees.

      • -

    • New program pdfgetn3 and IPython magic %pdfgetn3.

      • -

    • Separate configuration file pdfgetn3.cfg for the pdfgetn3 program.

      • -

    • New sub-package diffpy.pdfgetx.apps for entry points to all programs.

      • -

    • Table of electron scattering factors from E. J. Kirkland, -Advanced Computing in Electron Microscopy.

      • -

    • The + operator for additive pattern groups when matching input files -with pdfgetx3 --find.

      • -

    • An optional slash-containing entry, e.g., dir/, to set the search path -for pdfgetx3 --find. Each pattern group may have one path entry which -affects the current and subsequent pattern groups. Pattern groups that -have only the path entry reuse the previous file patterns, for example, -dir1/ .dat$ + dir2/ + dir3/.

      • -

    • The dotfiles flag argument to functs.findfiles to also find -dot-starting files without an explicit pattern.

      • -

    • Support for Python 3.7.

      • -

    • Tutorial examples for constant-wavelength neutron diffraction data.

      • -
    -
    -
    -

    Changed

    -
      -

    • Initialization arguments of PDFConfig to set initial configuration values.

      • -

    • path argument of functs.findfiles to give one search path instead -of a list of paths.

      • -

    • pdfgetx3 --find to search only the current directory and stop searching -in --datapath.

      • -

    • Improved PDF accuracy by removing repeated Q-grid interpolation.

      • -

    • Handling of dot files by pdfgetx3 --find and the functs.findfiles -function. The dotfiles are by default ignored unless explicitly selected -by a "^." pattern.

      • -

    • Return type of functs.findfiles from IPython SList to a simple list.

      • -

    • Rename camel case interactive functions to lowercase, i.e., to loaddata, -processfiles, clearsession.

      • -

    • Use config.datapath lookup in processfiles(filename).

      • -
    -
    -
    -

    Deprecated

    -
      -

    • Function cromermann.felectronatq for electron scattering -factors calculation using Mott-Bethe approximate formula.

      • -

    • IPython extension module diffpy.pdfgetx.ipy_pdfgetx3. -Use diffpy.pdfgetx.ipy_magics instead.

      • -

    • Camel case functions loadData, processFiles, clearSession.

      • -
    -
    -
    -

    Removed

    -
      -

    • Support for Python 2.6.

      • -

    • Processing of environment variable PDFGETX3PATH.

      • -

    • Support for IPython 0.x.

      • -

    • Obsolete variable __gitsha__ from the version module.

      • -

    • Processing of command line options in PDFConfig class.

      • -

    • Implicit loading of configuration files in PDFConfig instantiation.

      • -
    -
    -
    -

    Fixed

    -
      -

    • Import of all objects from matplotlib.pyplot into -an interactive session started by plotdata.

      • -

    • Inaccurate G interpolation when rstep is comparable to pi / qmax.

      • -

    • Lone anchor patterns ^, $ to match everything.

      • -
    -
    -
    -
    -

    Version 1.2 – 2018-01-12

    -
    -

    Added

    -
      -

    • Support for Python 3.4, 3.5, 3.6 in addition to Python 2.6 and 2.7.

      • -

    • Support for IPython 5.0 with preserved -compatibility with IPython 0.10 and later.

      • -

    • Support for matplotlib 2.0.

      • -

    • New option --log=LOG for the plotdata program to set logarithmic -scale for either of x or y axis. The plotdata() function learnt -a new log argument with the same purpose.

      • -

    • New argument ax for the plotdata() function that select a specific -matplotlib axis for plotting.

      • -

    • Support for Unicode filenames and values in the config -interactive variable.

      • -

    • Processing of parentheses and fractional stoichiometries in chemical -formulas as in Pb (Ti Zr)1/2 O3.

      • -

    • Explanatory error message when PDFgetX3 was installed for -unsupported Python.

      • -
    -
    -
    -

    Changed

    -
      -

    • The egg package file was enhanced to support all Python -versions. The software is now distributed in a single -egg rather than multiple eggs per each Python version.

      • -

    • PDFgetX3 option --force to take a boolean argument -(yes, no, true, etc.) or once. The configuration -parameter force can be likewise set to a bool or to -a string "once". This enables a safer one-time -overwrite of existing output files.

      • -

    • Plot labels to use a proper Unicode “Å” (Ångström) symbols. -The “Å” symbol is also used within units in output files.

      • -

    • The usecols argument of the loadData() function to also -accept scalars, open-end slice objects and string-denoted -slices such as "1:3" or "1:".

      • -

    • The plotdata program and plotdata() function to accept -open-end slices for the y-columns selection.

      • -

    • The IPython magic function %pdfgetx3 to set the _exit_code -variable as do generic shell commands run from IPython.

      • -

    • Inline documentation to use NumPy-style Napoleon format, -which is human readable and can be included in the manual.

      • -

    • Release scripts to build software package bundles and -documentation in binary-reproducible way.

      • -
    -
    -
    -

    Deprecated

    -
      -

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mode 100644 index c68e86aa..00000000 --- a/static_root/doc/pdfgetx/2.2.0/tutorial.html +++ /dev/null @@ -1,889 +0,0 @@ - - - - - - - Tutorial — diffpy.pdfgetx 2.2.0 documentation - - - - - - - - - - - - - - - - - - - - - -
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    Navigation

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    Tutorial

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    In this tutorial we will convert several X-ray powder diffraction -patterns to corresponding PDFs. Open a terminal on a Unix-based system -or a Command Prompt on Windows and navigate to the examples -folder included with the PDFgetX3 distribution. The examples -folder can be found in the parent “doc” directory relative to this -document or another option is to just search your file system for -one of the input files mentioned below. -The example files are also available at -https://www.diffpy.org/doc/pdfgetx/2.2.0/pdfgetxn3-examples.zip.

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    Nickel X-ray PDF

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    predefined configuration file

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    Change to the Ni directory. The file named -ni300mesh_300k_nor_1-5.chi contains powder X-ray data -measured from nickel at the Advanced Photon Source beamline -6ID-D. The file contains two columns for the 2Θ scattering -angles and X-ray intensities. The second file -kapton_bgrd_300k_nor_2-3.chi contains the background -measurement, i.e., the intensities from an empty capillary. -Finally, the pdfgetx3.cfg contains a complete configuration -parameters for converting the powder pattern to a PDF. Since all -processing parameters are already defined in the configuration file, -the first PDF calculation is very simple and involves running the -pdfgetx3 program -with the powder data file as an argument:

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    $ pdfgetx3 ni300mesh_300k_nor_1-5.chi
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    -
    -

    For the first run there should be no output on the screen, -however a new file, ni300mesh_300k_nor_1-5.gr should appear -in the work directory. -We can use the plotdata program, -included with this software, to plot the output data:

    -
    $ plotdata ni300mesh_300k_nor_1-5.gr
-
    -
    -

    This will open a graph window and start an IPython interactive session. -To exit and close the figure, type exit() on the IPython prompt. -Let’s run the program again, but now with a ---verbose=info -option, to show more details about the program actions.

    -
    $ pdfgetx3 --verbose=info ni300mesh_300k_nor_1-5.chi
-
-INFO:applying pdfgetx3 defaults
-INFO:set config.mode = xray
-INFO:searching for default config file /home/user/.pdfgetx3.cfg
-INFO:searching for default config file .pdfgetx3.cfg
-INFO:searching for default config file pdfgetx3.cfg
-INFO:loaded default config file pdfgetx3.cfg
-INFO:reset config.twothetazero = 0.0
-INFO:parsing config file section [DEFAULT]
-INFO:set config.dataformat = twotheta
-INFO:set config.backgroundfile = kapton_bgrd_300k_nor_2-3.chi
-INFO:set config.outputtypes = gr
-INFO:set config.wavelength = 0.142774
-INFO:set config.composition = Ni
-INFO:set config.qmaxinst = 26.5
-INFO:set config.qmax = 26.0
-INFO:set config.rmin = 0.0
-INFO:set config.rmax = 30.0
-INFO:set config.rstep = 0.01
-INFO:finished parsing config file
-INFO:processing command line options
-INFO:set config.verbose = info
-INFO:finished with command line options
-INFO:using 1 input files from the command line.
-INFO:configuring PDFGetter mode 'xray'
-INFO:calling config_xray
-INFO:started PDF processing.
-INFO:processing 'ni300mesh_300k_nor_1-5.chi'
-INFO:resolved output file '' as 'ni300mesh_300k_nor_1-5.gr'
-WARNING:ni300mesh_300k_nor_1-5.gr already exists.
-WARNING:Use "--force=yes" or "--force=once" to overwrite.
-INFO:elapsed time: 0.095
-
    -
    -

    Here we can see what configuration files are searched, which of them -get loaded and what are the effective values of the processing -parameters. Unless the --verbose option is in effect, the -program will show only messages that have either WARNING or ERROR -importance. The warning line above indicates no output has been -written, because that file already exists. This safety check can be -overruled with the --force=yes option, upon -which pdfgetx3 would overwrite any existing files.

    -

    PDFgetX3 output files start with a header that lists all the processing -parameters and can be used as a valid configuration file with the --c option. Another option, --plot=[iq,sq,fq,gr] turns on plotting of the final PDF or of some other result. A -side effect of the --plot option is that pdfgetx3 starts in -an interactive mode, so the user can manipulate or save the plots. To -put it all together, we are now going to redo the original PDF and plot -its reduced total scattering function F(Q) and the PDF curve G(r). This -time the chi file is not necessary, because the input file is already -listed in the gr file that is now used as a custom configuration:

    -
    $ pdfgetx3 -c ni300mesh_300k_nor_1-5.gr --plot=fq,gr
-
-WARNING:ni300mesh_300k_nor_1-5.gr already exists.
-WARNING:Use "--force=yes" or "--force=once" to overwrite.
-
-Variables related to PDF processing:
-
-pdfgetter    -- PDFGetter used for calculation.
-config       -- configuration data used by PDFGetter.
-                See config.inputfiles for a list of inputs.
-iraw         -- matrix of input raw intensities with 2 rows per file.
-iq sq fq gr  -- intermediate results per each input file stored
-                as matrix rows.
-
-Functions:
-
-tuneconfig   -- dynamically tune configuration variables.
-processfiles -- process specified data files.
-clearsession -- clear all elements from the inputfiles, iraw,
-                iq, sq, fq and gr variables.
-plotdata     -- plot all or selected columns from a text data file.
-loaddata     -- load all or selected columns from a text data file.
-findfiles    -- search for files matching the specified patterns.
-
-Use "%pdfgetx3" for a fresh run without exiting IPython.
-In [1]:
-
    -
    -

    This will open a plot figure similar to

    -_images/nickelfqgr.png -

    Because of the interactive mode implied by plotting, -the program enters an IPython session. -The IPython environment is preloaded with several extra functions -and variables related to the PDF processing. For example, the -config variable stores all the configuration parameters, -and its content can be displayed with the print() -function as

    -
    In [1]: print(config)
-
-configfile = ni300mesh_300k_nor_1-5.gr
-configsection = DEFAULT
-dataformat = twotheta
-...
-qmax = 26.0
-...
-
    -
    -

    The processfiles() function allows to redo the -whole calculation and plotting process for additional input files or -for new parameter values. To plot the F(Q) and G(r) -curves calculated at Qmax = 22 Å-1, we can call -processfiles() and pass it a keyword argument for -the new qmax as follows:

    -
    In [2]: processfiles(qmax=22)
-
-# the qmax parameter was updated to a new value, thus
-In [3]: config.qmax
-Out[3]: 22
-
    -
    -

    There should be now two lines in each plot axis corresponding to -the results at Qmax equal 26 and 22 Å-1. To exit the program, -type exit().

    -
    -
    -

    processing from scratch

    -

    We have already encountered the command-line option -c -for specifying a custom configuration file. A special argument “NONE”, -will make pdfgetx3 ignore any configuration files and start up in a -default state. We can use this feature to process the nickel PDF as if -we did not have any configuration file:

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi
-
-WARNING:Nothing to do, use "-t" or "--plot" options.
-ERROR:Configuration error: wavelength not specified.
-ERROR:See "--help" for more hints.
-
    -
    -

    There is an error, for the wavelength is necessary to convert -the scattering angle 2Θ to momentum transfer Q. The -X-ray wavelength was 0.142774 Å, which can be passed with the --w, --wavelength option:

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774
-
-...
-ERROR:Configuration error: Chemical composition not known.
-ERROR:See "--help" for more hints.
-
    -
    -

    There is still an error. The PDF calculation needs an average -X-ray scattering factor of the material, which is obtained from -sample chemical composition. The composition can be specified -with the --composition option. The example -below uses a “\\” character to indicate the command continues -on the next line. Such syntax works in Unix terminals, but -on Windows the command has to be typed all on a single line:

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \
-           --composition=Ni
-
-WARNING:Nothing to do, use "-t" or "--plot" options.
-...
-
    -
    -

    There was no error message this time, but the program complains -about a lack of action. The pdfgetx3 program does not write any results -unless instructed by the -t, --outputtypes option. -The outputtypes option recognizes the following result types: -“iq”, “sq”, “fq”, “gr”. One or more of these type strings, -separated by a comma, can be included with the --t option, which will produce the corresponding -output files. An empty string, such as -t "", or -t NONE -may be used to clear any outputtypes defined in the configuration file, -and avoid the unseemly file-exists warnings.

    -

    At this point, we will not write any output files, but will use the ---plot option to display the calculated curves. The ---plot accepts the same arguments as outputtypes, so to -display the F(Q) and G(r) curves we shall run

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \
-           --composition=Ni --plot=fq,gr
-
-WARNING:qmaxinst reset to last nonzero point qmaxinst=28.0865680161
-WARNING:qmax reset to the data boundary qmaxinst=28.0865680161
-
    -
    -

    which should open the following plot window:

    -_images/nickelfqgrnoisy.png -

    The graphs look terrible. The PDF is very noisy and the F(Q) curve -shows a sudden break at about 27 Å-1. What happened? The powder -intensities are inaccurate at a very top of the detector angular range. -The interactive session is setup with -iraw, iq, sq, -fq, gr -variables for the original raw data and intermediate results. We -are going to plot the “iq” variable that has the input intensities -resampled on the Q grid. The matplotlib function -clf() clears the figure, -the iq variable is a two-row matrix with Q and I rows, and the -axis() -function lets us zoom to a given range:

    -
    In [1]: clf()
-In [2]: plot(iq[0], iq[1])
-Out[2]: [<matplotlib.lines.Line2D at 0x3e20f50>]
-In [3]: axis([20, 29, 0, 3000])
-Out[3]: [20, 29, 0, 3000]
-
    -
    -

    The graph shows a sudden drop in the raw intensities at 27 Å-1. -The qmaxinst variable defines a Q cutoff for a meaningful -instrument intensities and, to be on a safe side, we are going to set -it to 26.5 Å-1

    -
    In [4]: processfiles(qmaxinst=26.5)
-WARNING:qmax reset to the data boundary qmaxinst=26.5
-
    -
    -

    The updated curves looks reasonable without any oscillations and -breakpoints. The tuneconfig() function provides a -GUI-driven way for visualizing the processing parameters and their -effect on the results. Type tuneconfig() to execute the function, -which should open a new window with several sliders. Try to move -different sliders and see how do the F(Q) and G(r) curves change. -The rpoly parameter controls the degree of data-correction -polynomial and is an approximate low-r bound of reliable G -values. Once the parameters are tuned, they may be set to -exact values. We will also turn on the writing of the G(r) -curve and save it to an output file nicmd.gr:

    -
    In [14]: config.qmax = 26
-In [15]: config.outputtypes = 'gr'
-In [16]: config.output = 'nicmd'
-In [17]: processfiles()
-
    -
    -
    -
    -
    -

    Platinum X-ray series

    -

    PDFgetX3 has been designed to handle large series of data files. -With the fast area-detectors it is easy to measure hundreds of X-ray -patterns in a time or temperature series. Normally, these input -files need to be entered as command line arguments to the pdfgetx3 -program. This is usually no problem with Unix-like shells, which -expand filename patterns to a list of matching files. -However, such file generation is in general not available on Windows. -The input file names tend to include scan numbers which are useful -for selecting desired data, yet even with Unix shells it is -difficult to match a range of scan numbers -(z-shell being a notable exception).

    -
    -

    matching input files

    -

    The pdfgetx3 program includes a built-in function for finding -a set of input files. The command line arguments are normally taken as -input file names. However, if the -f, --find option is -present, the arguments are understood as patterns and the program looks -for files that match ALL of them. Another option --l, --list makes pdfgetx3 print out the matching files -without any other action, which can be used to verify if the patterns -match intended files.

    -

    We will try out this file search on platinum example files. Open a -terminal and navigate to the Pt directory. There should be a -series subdirectory with 6 chi files indexed from 903 to 908. -At first, let’s stay in the Pt directory and run the following -command

    -
    $ pdfgetx3 --list --find
-
-Pt_bulk-00055-pdfgetx2.gr
-Pt_bulk-00055-pdfgetx3.gr
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-pdfgetx3.cfg
-plotpdfcomparison.py
-
    -
    -

    Without any patterns the file search matches all files in the current -directory. Now let’s try to add name patterns. There are few special -patterns, for example ^ matches at the beginning of the filename, $ at the end and <N-M> matches a range of integer values from -N to M. The patterns containing ^$<> need to be quoted as -these characters have special meaning in the shell. Here are some -examples how it works.

    -

    Filenames containing “y”:

    -
    $ pdfgetx3 --list --find y
-empty_capillary-00032.chi
-plotpdfcomparison.py
-
    -
    -

    Filenames that containing both “y” and “chi”, here we use the -options --list and --find in an abbreviated -form -l and -f:

    -
    $ pdfgetx3 -lf y chi
-empty_capillary-00032.chi
-
    -
    -

    Filenames that start with “e”:

    -
    $ pdfgetx3 --list --find "^e"
-empty_capillary-00032.chi
-
    -
    -

    Filenames that contain character “2”:

    -
    $ pdfgetx3 --list --find 2
-Pt_bulk-00055-pdfgetx2.gr
-empty_capillary-00032.chi
-
    -
    -

    Filenames that contain numeric value “2”:

    -
    $ pdfgetx3 -lf "<2>"
-Pt_bulk-00055-pdfgetx2.gr
-
    -
    -

    The special argument + starts a new group of patterns to -generate extra files when they cannot be all covered by -a single set of patterns. For example, to match files that -contain contain both “bulk” and “chi” substrings and then -also those that have “empty” and “chi” in their names, use:

    -
    $ pdfgetx3 -lf bulk chi + empty chi
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-
    -
    -

    When pattern groups overlap the resulting matches are -made unique and each file is listed only once

    -
    $ pdfgetx3 -lf bulk chi + chi
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-
    -
    -
    -
    -

    data search path

    -

    Each group of PDFgetX3 patterns can have one entry containing -forward slash “/” to specify a non-current path that is searched -for input files. The path specification affects the current and -the following pattern groups unless they provide their own path. -The chi files numbered “903” to “905” and “908” from the -series subdirectory can be therefore matched using

    -
    $ pdfgetx3 -lf series/ "<903-905>" + 908
-series/Pt_bulk_ramp03-00903.chi
-series/Pt_bulk_ramp03-00904.chi
-series/Pt_bulk_ramp03-00905.chi
-series/Pt_bulk_ramp03-00908.chi
-
    -
    -

    The current directory can be selected using ./

    -
    $ pdfgetx3 -lf series/ 903 + ./ bulk chi
-series/Pt_bulk_ramp03-00903.chi
-Pt_bulk-00055.chi
-
    -
    -

    When additional pattern groups contain only the path -argument, they reuse the existing set of patterns. The -“.chi”-ending files in the current and series -directories can be thus found using

    -
    $ pdfgetx3 -lf ".chi$" + series/
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-series/Pt_bulk_ramp03-00903.chi
-series/Pt_bulk_ramp03-00904.chi
-series/Pt_bulk_ramp03-00905.chi
-series/Pt_bulk_ramp03-00906.chi
-series/Pt_bulk_ramp03-00907.chi
-series/Pt_bulk_ramp03-00908.chi
-
    -
    -
    -
    -

    output file names

    -

    By default the output files are saved in the current directory. The -output path, can be changed with the -o, --output option. -The -o recognizes several tokens that are replaced with -parts of the input file name, for example, “@b” expands to an -extension-stripped base name. In similar faction, “@o” is replaced -with the output type extension. Thus to generate PDFs for all files -in the series directory and save them in the -series-gr subfolder do

    -
    $ pdfgetx3 --find series/ "<900-910>.chi" --output=series-gr/@b.@o
-
    -
    -

    The extension “.@o” is automatic when not included anywhere in the -output file name. Thus to process the Pt series at Qmax = 18 Å-1 -while saving the results in the same folder, but with a “_qmax18” suffix -in their filenames do

    -
    $ pdfgetx3 --find series/ "<900-910>.chi" --qmax=18 -o series-gr/@b_qmax18
-
    -
    -

    For input file Pt_bulk_ramp03-00903.chi the -o option -above expands to output path series-gr/Pt_bulk_ramp03-00903_qmax18.gr. -The series-gr directory should now contain 12 “gr” files, -6 of them processed at Qmax = 27 Å-1 as given by configuration -file and 6 others processed at Qmax = 18 Å-1.

    -
    -

    See also

    -

    -o, --output for a list of output tokens

    -
    -
    -
    -
    -

    Interactive tuning of parameters

    -

    One of the most powerful features of PDFgetX3 is the ability to tune -PDF processing parameters in an interactive mode and immediately -visualize their effect on the results. To demonstrate this feature, -navigate to the Ni directory in the shell and process -the nickel PDF while plotting the F(Q) and G(r) curves. -Because of plotting the program will open an interactive IPython -session. The tuning mode can be then entered by calling the -tuneconfig() -function from the IPython environment

    -
    $ pdfgetx3 --plot=fq,gr ni300mesh_300k_nor_1-5.chi
-...
-In [1]: tuneconfig()
-
    -
    -

    The -tuneconfig() -function will by default add a second set of live lines -for the plotted curves and open a GUI dialog with sliders for the -tunable process parameters. Changing any slider would immediately -recalculate the PDF and update live lines in the plot.

    -_images/tunenickelfqgr.png -

    The constant data scale check-box rescales the result curves to a -constant maximum value. This is useful for assessing if a parameter -change produces different curve shape or if it just rescales the -results. The tunable parameters are described in the -PDF parameters section. -Only the active parameters are displayed in the tuneconfig GUI, -thus there would be no slider for the bgscale parameter -if PDF has been processed without any background data.

    -

    By default the -tuneconfig() -function displays the same curves as -specified by the --plot option, however it can be -configured to show arbitrary intermediate results or even visualize -selected steps in the PDF processing. We shall demonstrate this by -showing a live-plot of the polynomial correction together with the final -PDF. At first, we shall use the describe() method of the -pdfgetter() object to print out the chain of -transformations involved in the PDF processing and obtain a reference to -the transformation object t4 that applies the polynomial correction. -The transformation object can be then included in a list of plot -identifiers that are passed to the tuneconfig() function

    -
    $ pdfgetx3 -i ni300mesh_300k_nor_1-5.chi
-...
-Use "%pdfgetx3" for a fresh run without exiting IPython.
-
-In [1]: fig, ax = subplots(2)
-In [2]: pdfgetter.describe()
-0   TransformTwoThetaToQA
-    convert x data from twotheta to Q in 1/A
-1   TransformQGridRegular
-    Remove the data outside the (qmin, qmaxinst) range
-2   TransformBackground
-    subtract background intensity
-3   TransformXrayASFnormChris
-    scale and normalize intensities by x-ray scattering factors
-4   TransformSQnormRPoly
-    Normalize S(Q) by fitting a polynomial
-5   TransformSQToFQ
-    Convert S(Q) to F(Q).
-6   TransformFQgrid
-    Resample F(Q) to a regular grid suitable for FFT
-7   TransformFQToGr
-    Convert F(Q) to G(r).
-In [3]: t4 = pdfgetter.getTransformation(4)
-In [4]: tuneconfig([t4, 'gr'], axeslist=ax)
-In [5]: ax[0].legend(loc=2)
-
    -
    -

    The subplots() function above -is to create a new figure with 2 axes on top of each other. -Overall, the code above should display the following plot -and a GUI window:

    -_images/tunenickelt4gr.png -

    The tuning can be finished by clicking the Done button or closing the -tuneconfig GUI window. The parameter values can be thereafter adjusted -to a rounded values by setting an attribute of the config -object, for example:

    -
    In [5]: config.bgscale = 1.5
-
    -
    -

    Finally, to save the new results, we shall first confirm -outputtypes have been correctly set and then use the -processfiles() function to redo the calculations, plots and -data output for the updated configuration. Note that the -processfiles() function accepts keyword arguments for -configuration parameters. This is used at line In [8] to -turn on the force flag and is in effect a shortcut -for an extra config.force = True statement.

    -
    In [6]: config.outputtypes
-Out[6]: ['gr']
-In [7]: processfiles()
-WARNING:ni300mesh_300k_nor_1-5.gr already exists.
-WARNING:Use "--force=yes" or "--force=once" to overwrite.
-In [8]: processfiles(force=True)
-
    -
    -

    ni300mesh_300k_nor_1-5.gr was successfully saved at an -updated configuration for there were no warnings after the last call.

    -
    -
    -

    Neutron PDF

    -

    This example illustrates PDF extraction from -neutron powder data using pdfgetn3. -Navigate to the n-Sapphire directory in the shell. -The sapphire755.dat file contains powder diffraction data from -sapphire (α-Al2O3) -measured at the constant-wavelength PEARL instrument -at the Delft University of Technology. -The pdfgetn3.cfg configuration file specifies -processing parameters such as wavelength, -twothetazero, composition, and mode.

    -

    To extract the sapphire neutron PDF run

    -
    $ pdfgetn3 --verbose=info sapphire755.dat
-
-INFO:applying pdfgetn3 defaults
-INFO:set config.mode = neutron
-INFO:searching for default config file /home/user/.pdfgetn3.cfg
-INFO:searching for default config file .pdfgetn3.cfg
-INFO:searching for default config file pdfgetn3.cfg
-INFO:loaded default config file pdfgetn3.cfg
-INFO:reset config.twothetazero = 0.0
-INFO:parsing config file section [DEFAULT]
-INFO:set config.dataformat = twotheta
-INFO:set config.backgroundfile =
-INFO:set config.outputtypes = fq, gr
-INFO:set config.mode = neutron
-INFO:set config.wavelength = 1.0989
-INFO:set config.twothetazero = -0.38
-INFO:set config.composition = Al2O3
-INFO:set config.qmaxinst = 11.2
-INFO:set config.qmax = 11.2
-INFO:set config.rmin = 0.0
-INFO:set config.rmax = 20.0
-INFO:set config.rstep = 0.01
-INFO:finished parsing config file
-INFO:processing command line options
-INFO:set config.verbose = info
-INFO:finished with command line options
-INFO:using 1 input files from the command line.
-INFO:configuring PDFGetter mode 'neutron'
-INFO:calling config_neutron
-INFO:started PDF processing.
-INFO:processing 'sapphire755.dat'
-INFO:resolved output file '' as 'sapphire755.fq'
-INFO:written outpufile sapphire755.fq
-INFO:resolved output file '' as 'sapphire755.gr'
-INFO:written outpufile sapphire755.gr
-INFO:elapsed time: 0.097
-
    -
    -

    This will produce two files sapphire755.fq, sapphire755.gr -for the F(Q) and G(r) functions. -To compare them with expected results use

    -
    $ plotdata sapphire755-expected.fq sapphire755.fq
-$ plotdata sapphire755-expected.gr sapphire755.gr
-
    -
    -
    -
    -

    Fit twothetazero

    -

    For a good quality PDF it is essential to use powder patterns with -accurate values of Q. Some instruments may produce spectra with -a slightly offset scattering angle 2Θ which -causes inaccurate Q and a noticeably worse PDF. -In this example we fit a constant-wavelength neutron PDF from nickel -together with the twothetazero correction parameter for -diffractometer offset. -The procedure can be used to calibrate the zero correction from -a standard sample and then use it for subsequent PDF extractions. -The protocol can be also applied to fit zero correction in -a full-fledged PDF refinement in case -the zero offset may change for different samples.

    -

    This tutorial requires either Linux or Mac OS X platforms, -because the PDF fitting is conducted with -diffpy.cmi, -which is not yet available for Windows. -If diffpy.cmi is not yet installed, -we recommend to use Anaconda Python and set up a dedicated -Anaconda environment nbcmi for this tutorial. -This can be accomplished using the following steps:

    -
    $ conda create -n nbcmi -c diffpy python=2 diffpy.cmi
-$ conda activate nbcmi
-$ pip install path/to/diffpy.pdfgetx-VERSION.whl
-
    -
    -

    When these prerequisites are in place, -change to the n-twothetazero-fit directory -and open the self documented Jupyter notebook as follows

    -
    $ jupyter notebook fit-twothetazero.ipynb
-
    -
    -

    The notebook sets up and executes several PDF refinements and -compares the results from fits on uncorrected data and with -a fitted twothetazero. -After running all cells the notebook should produce similar graphs -as in the figure below.

    -
    -_images/twothetazerofit.svgz

    Refinement of nickel neutron PDF for (a) uncorrected data -and (b) with a refined zero correction. -The extracted PDFs are plotted as blue circles, -simulated PDFs as red lines and -the difference is plotted offset in green below.

    -
    -

    The final refined zero offset in the notebook should be approximately -0.36°. -The correction produces experimental PDF with a remarkably better fit -residual Rw which is lowered from (a) 0.18 to (b) 0.05.

    -
    -
    -

    Small-angle-scattering PDF (sasPDF)

    -

    Here we illustrate how to extract a PDF from small-angle-scattering (sas) data using pdfgets3. -To do this, navigate to the Au_DNA_NPA directory in your terminal. -In this folder, you will find Au_DNA_NPA.chi and -Au_DNA_FF.chi files which correspond to diffraction data from -DNA-capped Au nanoparticle assemblies and from a DNA-capped Au -nanoparticle colloidal solution respectively. Those two files were -measured at X21 beamline, NSLS and published in D. Nykypanchuk, M. M. -Maye, D. van der Lelie, and O. Gang, Nature 451, 549 (2008).. We thank Prof. Oleg Gang (Columbia University) for sharing this data. The pdfgets3.cfg -configuration file specifies processing parameters such as formfactorfile (required by sas mode), qmin, qmax, and mode.

    -

    To extract the PDF of DNA-capped DNA nanoparticle assemblies

    -
    $ pdfgets3 --verbose=info Au_DNA_NPA.chi
-
-INFO:applying pdfgets3 defaults
-INFO:set config.mode = sas
-INFO:searching for default config file /home/user/.pdfgets3.cfg
-INFO:searching for default config file .pdfgets3.cfg
-INFO:searching for default config file pdfgets3.cfg
-INFO:loaded default config file pdfgets3.cfg
-INFO:reset config.twothetazero = 0.0
-INFO:parsing config file section [DEFAULT]
-INFO:set config.dataformat = QA
-INFO:set config.backgroundfile =
-INFO:set config.datapath = []
-INFO:set config.formfactorfile = Au_DNA_FF.chi
-INFO:set config.output =
-INFO:set config.outputtypes = fq, gr
-INFO:set config.force = yes
-INFO:set config.mode = sas
-INFO:set config.rpoly = 240.605
-INFO:set config.qmaxinst = 0.075
-INFO:set config.qmin = 0.01
-INFO:set config.qmax = 0.072
-INFO:set config.rmin = 100.0
-INFO:set config.rmax = 5000.0
-INFO:set config.rstep = 1.0
-INFO:set config.plot = iq, fq, gr
-INFO:set config.verbose = info
-INFO:finished parsing config file
-INFO:processing command line options
-INFO:set config.verbose = info
-INFO:finished with command line options
-INFO:using 1 input files from the command line.
-INFO:configuring PDFGetter mode 'sas'
-INFO:calling config_sas
-INFO:started PDF processing.
-INFO:processing 'Au_DNA_NPA.chi'
-INFO:resolved output file '' as 'Au_DNA_NPA.fq'
-INFO:written outpufile Au_DNA_NPA.fq
-INFO:resolved output file '' as 'Au_DNA_NPA.gr'
-INFO:written outpufile Au_DNA_NPA.gr
-INFO:elapsed time: 0.947
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    This will save two files Au_DNA_NPA.fq, Au_DNA_NPA.gr in the same directoy for the F(Q) and G(r) functions. This also plots F(Q) and G(r) functions in a pop-up window and the processing parameters such as rpoly or so may be tuned interactively by issuing command tuneconfig() in the IPython session as discussed above.

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    Multiple Background Subtraction

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    Predefined configuration file

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    In this tutorial, we will show how to use the multiple-background subtraction -functionality by obtainining equivalent outputs from different, but equivalent, -subtractions. Change directory to the doc/examples/ -Multiple_Background_Subtraction directory. The file named -ni300mesh_300k_nor_1-5.chi contains powder X-ray data measured from -nickel at the Advanced Photon Source beamline 6ID-D. The file contains two -columns for the 2Θ scattering angles and X-ray intensities. Similarly, -kapton_bgrd_300k_nor_2-3.chi contains the background data (i.e., the -intensities from an empty kapton capillary), and a duplicate file -kapton_bgrd_300k_nor_2-3_copy.chi contains the same dataset (this -duplication of the data is necessary when using the same background multiple -times as the internal system only stores a set of unique background filenames). -The last .chi file, TEST_blank-00000.chi, simply stores a null -dataset and can be used to show the invariance of the PDF under permutation of -the order of background subtractions as well as the fact that more than just -two backgrounds can be subtracted. There are also two config files -nickel.cfg and nickel_sub_two_half_backgrounds.cfg, each of -which contain a set of complete configuration parameters for converting the Ni -powder pattern to a PDF for the case of doing so via a single background -subtraction and a multiple background subtraction, respectively. Finally, there -is a fully processed G(r) file ni300mesh_300k_nor_1-5-expected.gr which -contains the expected output of producing the PDF of the Ni sample after -subtracting the kapton background. Since all processing parameters are already -defined in these configuration files, producing the PDF using multiple -background subtractions is very simple and involves running the pdfgetx3 program and specifying the multiple background subtraction -config file and the powder data file as arguments:

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    $ pdfgetx3 -c nickel_sub_two_half_backgrounds.cfg ni300mesh_300k_nor_1-5.chi
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    The resulting G(r) file, ni300mesh_300k_nor_1-5.gr, is the result of -producing the PDF according to:

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    "ni300mesh_300k_nor_1-5.chi" - 0.5*"kapton_bgrd_300k_nor_2-3.chi"
-- 0.5*"kapton_bgrd_300k_nor_2-3.chi"
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    Which should be equivalent to the case where the following single background -subtraction had been performed:

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    "ni300mesh_300k_nor_1-5.chi" - 1.0*"kapton_bgrd_300k_nor_2-3.chi"
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    -
    -

    The fact that both of these result in the same PDF can be verified by comparing -the produced G(r) with the expected G(r) provided in the example:

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    $ plotdata ni300mesh_300k_nor_1-5-expected.gr ni300mesh_300k_nor_1-5.gr
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    Interactive Multiple Background Subtraction

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    The multiple background subtraction functionality can also be carried out -interactively, as per the Interactive tuning of parameters section, using the plural forms -of the relevant variables (i.e., config.bgscales, config.backgroundfiles, -etc.).

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    Navigation

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    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.2.1/PDFgetXNS3_manual.pdf b/static_root/doc/pdfgetx/2.2.1/PDFgetXNS3_manual.pdf deleted file mode 100644 index 3199e5c4..00000000 Binary files a/static_root/doc/pdfgetx/2.2.1/PDFgetXNS3_manual.pdf and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.2.1/_images/nickelfqgr.png b/static_root/doc/pdfgetx/2.2.1/_images/nickelfqgr.png deleted file mode 100644 index 3fbc12de..00000000 Binary files a/static_root/doc/pdfgetx/2.2.1/_images/nickelfqgr.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.2.1/_images/nickelfqgrnoisy.png b/static_root/doc/pdfgetx/2.2.1/_images/nickelfqgrnoisy.png deleted file mode 100644 index caab8cf3..00000000 Binary files a/static_root/doc/pdfgetx/2.2.1/_images/nickelfqgrnoisy.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.2.1/_images/tunenickelfqgr.png b/static_root/doc/pdfgetx/2.2.1/_images/tunenickelfqgr.png deleted file mode 100644 index 14accde4..00000000 Binary files a/static_root/doc/pdfgetx/2.2.1/_images/tunenickelfqgr.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.2.1/_images/tunenickelt4gr.png b/static_root/doc/pdfgetx/2.2.1/_images/tunenickelt4gr.png deleted file mode 100644 index c95278cd..00000000 Binary files a/static_root/doc/pdfgetx/2.2.1/_images/tunenickelt4gr.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.2.1/_images/twothetazerofit.svgz b/static_root/doc/pdfgetx/2.2.1/_images/twothetazerofit.svgz deleted file mode 100644 index 80e48d71..00000000 Binary files a/static_root/doc/pdfgetx/2.2.1/_images/twothetazerofit.svgz and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.2.1/_sources/files.rst.txt b/static_root/doc/pdfgetx/2.2.1/_sources/files.rst.txt deleted file mode 100644 index edc63d96..00000000 --- a/static_root/doc/pdfgetx/2.2.1/_sources/files.rst.txt +++ /dev/null @@ -1,102 +0,0 @@ -Files used in PDF extraction -======================================================================== - -.. include:: abbreviations.txt -.. _my-configfile: -.. program:: pdfgetx3 - -Configuration file ------------------------------------------------------------------------- - -Configuration files may define the PDF processing parameters. -By default, the :program:`pdfgetx3` program attempts to read -:file:`.pdfgetx3.cfg` file from the user HOME directory, -then :file:`.pdfgetx3.cfg` and :file:`pdfgetx3.cfg` files -from the current working directory. -If configuration file has a different name, it needs to be specified -with the :option:`-c, --config <-c>` option. -The :program:`pdfgetn3` program works in the same way, -except it checks for configuration files -:file:`~/.pdfgetn3.cfg`, :file:`.pdfgetn3.cfg` and :file:`pdfgetn3.cfg`. - -The easiest way of creating a configuration file is to generate -a template content using the :option:`--createconfig` option as :: - - pdfgetx3 --createconfig=test.cfg - -and then change the generated test.cfg file in your favorite text -editor. The configuration file follows a simple "varname=value" syntax, -any lines starting with "#" are ignored as comments. - -The configuration file has several sections marked as ``[SECTIONNAME]``. -The ``[DEFAULT]`` section is mandatory and it contains the default -global settings. Any other sections are optional and they are applied -only when selected with the :option:`-s, --section <-s>` option on the -command line. Thus :: - - pdfgetx3 --config=test.cfg --section=nacl - -would read the parameters from the ``[nacl]`` section after reading the -defaults. Having several sections in the configuration -file is useful when there are multiple measurements that share most of -the parameters, but differ in a few of them, for example in chemical -composition. The configuration file can then contain sections per each -sample that define only the composition, while all other parameters are -specified just once in the global DEFAULT section. - - -Input files ------------------------------------------------------------------------- - -PDFgetX3 and PDFgetN3 accept input powder diffraction data -in the form of two-column text file, -where the first column x is either the scattering angle -|twotheta| in degrees, momentum transfer *Q* in inverse nanometers or *Q* -in inverse ångströms. The second column y contains the corresponding -scattered intensities normalized per unit solid angle. The actual type -of the x-values is identified by the :confval:`dataformat` parameter. -The input files may contain header with comments or metadata, and the -actual data are read from the first long section of numerical values. - -The input files are usually passed as command-line arguments to -:program:`pdfgetx3` or :program:`pdfgetn3` programs and must be paths -accessible from the current working directory. - -Input files can be also defined by setting the :confval:`inputfile` -value in the configuration file. The :option:`-d, --datapath <-d>` -option can be then used to provide additional data directories to -search for these inputs and for the :confval:`backgroundfile`. -This is to support configuration files located in a different -directory than the data. - -When the :option:`--find <-f>` option is active, the pdfgetx3 arguments -are understood as filename patterns and the input files are found -in the current or specified directory. - - -Output files ------------------------------------------------------------------------- - -PDFgetX3 and PDFgetN3 can produce up to four different output data files: - -* .iq -- |IQ|, the background-corrected - intensities sampled on a regular *Q*-space grid in inverse ångströms, - -* .sq -- |SQ|, the total scattering structure function, - with intensities normalized by average scattering factors and - corrected by a polynomial fit, - -* .fq -- |FQ|, the reduced structure function equal to *Q*\ (|SQ| - 1), - -* .gr -- |Gr|, the resultant PDF, where the first column is the - separation *r* in ångströms and the second is the function *G* in - Å\ :sup:`-2`. - -You can specify what output files should be produced by setting the -:confval:`outputtypes` parameter in the configuration file or by -passing the :option:`-t, --outputtypes <-t>` on the command line. - -The header of all output files contains the parameter values that were -used in the calculation and thus it is by itself a valid configuration -file. When passed as an argument to the :option:`--config <-c>` option, -the PDFgetX3 will reproduce the previous calculation. diff --git a/static_root/doc/pdfgetx/2.2.1/_sources/index.rst.txt b/static_root/doc/pdfgetx/2.2.1/_sources/index.rst.txt deleted file mode 100644 index c7bf373e..00000000 --- a/static_root/doc/pdfgetx/2.2.1/_sources/index.rst.txt +++ /dev/null @@ -1,38 +0,0 @@ -.. PDFgetX3 documentation master file, created by - sphinx-quickstart on Tue Sep 21 18:35:11 2010. - You can adapt this file completely to your liking, - but it should at least contain the root `toctree` directive. - -######################################################################## -diffpy.pdfgetx -######################################################################## - -User manual for PDFgetX3, PDFgetN3, PDFgetS3 and Python package diffpy.pdfgetx. - -| Release |release| -| |today| - -======================================================================== -Table of contents -======================================================================== - - -.. toctree:: - :maxdepth: 2 - - intro - install - quick-start - tutorial - files - interact - options - plotdata - release - -======================================================================== -Indices -======================================================================== - -* :ref:`genindex` -* :ref:`search` diff --git a/static_root/doc/pdfgetx/2.2.1/_sources/install.rst.txt b/static_root/doc/pdfgetx/2.2.1/_sources/install.rst.txt deleted file mode 100644 index 667637dd..00000000 --- a/static_root/doc/pdfgetx/2.2.1/_sources/install.rst.txt +++ /dev/null @@ -1,146 +0,0 @@ -Installation -======================================================================== - -.. include:: abbreviations.txt - -Software requirements ------------------------------------------------------------------------- - -This software is written in Python programming language, therefore -you must have Python 3.10, 3.9, 3.8, 3.7 or 2.7 installed. In addition, -the following third-party Python libraries are also required: - -* pip - Python package installer -* setuptools - tools for installing Python packages -* six - Python 2 and 3 compatibility library -* NumPy - library for scientific computing with Python -* matplotlib - Python plotting library -* IPython - enhanced interactive Python shell - -Standard Python releases can be obtained from -https://www.python.org/downloads. -The third-party libraries can be found at the -`Python Package Index `__ -or using any Internet search engine. - -Another more convenient option is to obtain one of the science-oriented -Python distributions such as -`Anaconda Python`_, -`Enthought Canopy `_ or -`PythonXY `_, -These distributions already include all the necessary libraries, so the -required Python software can be all installed in one step. - -On Linux operating systems the third-party libraries are usually -included in a system software repository. For example on an -Ubuntu Linux computer the software dependencies can be all installed -with a single shell command :: - - sudo apt-get install \ - python3-pip python3-setuptools python3-six \ - python3-numpy python3-matplotlib ipython3 - -This may be, of course, as well accomplished using the GUI -driven Synaptic package manager. Other Linux -distributions may use different software management tools, -but the names of the necessary packages should be very similar -to those above. - -On Windows operating system, it may be necessary to add the -``C:\Python37`` directory and the scripts directory -``C:\Python37\Scripts`` to the system :envvar:`!PATH`. Some Python -distributions already do so as a part of their installation process. The -easiest way to check is to start the :program:`Command Prompt`, type -there ``python`` and see if this starts the Python interpreter. - -Alternately, if you want to run the diffpy.pdfgetx software with a specific version of Python, -we recommend using a virtual environment, such as ``conda``. For example, if you have Anaconda Python installed, -you can create a conda virtual environment to install the software as follow :: - - conda create --name pdfgetx_env python=3.8 numpy matplotlib ipython - -You can choose the name of the environment and python version as you desire. You can choose any of the -supported Python versions. Then, activate this environment and follow the instructions in the -next section to install the software :: - - conda activate pdfgetx_env - -Installation ------------------------------------------------------------------------- - -The diffpy.pdfgetx software is distributed as a Python wheel file, -which can be obtained from the -`Columbia Technology Ventures -`__. -Once all the required software is in -place, start the command prompt on Windows or a Unix terminal on Linux -or Mac, navigate to the directory that contains the wheel file and -execute the following command:: - - pip install ./diffpy.pdfgetx-VERSION.whl - -Here VERSION needs to be replaced to match the actual filename. It is -critical that pip installer is from a supported Python version otherwise -the program would not work. On Linux and Mac operating systems the installation may need to run with root user privileges, for example, by prepending ``sudo`` to the command line above. If root access is not available, use the ``pip install`` options :option:`!--user` or :option:`!--prefix` to install the software to a user-writable directory. - -The package provides three programs for PDF conversion, :program:`pdfgetx3`, :program:`pdfgetn3` and :program:`pdfgets3`. To check if they are correctly installed run :: - - pdfgetx3 --version - pdfgetn3 --version - pdfgets3 --version - -This should display the software version, which should agree -with the VERSION string in the wheel package name. -The installation also includes a :program:`plotdata` -command for an easy plotting of text data files. To verify -if plotdata works, run the ``plotdata --version`` command. -Finally, a comprehensive test of the installed software can -be executed using :: - - python -m diffpy.pdfgetx.tests.run - -.. note:: - - Older versions of diffpy.pdfgetx use Python egg format - instead of Python wheel. - To install these use the easy_install command as follows:: - - python -m easy_install ./diffpy.pdfgetx-VERSION.egg - -.. index:: %pdfgetx3 IPython magic -.. index:: %pdfgetn3 IPython magic -.. index:: %pdfgets3 IPython magic - -IPython magic command ------------------------------------------------------------------------- - -These instructions are intended for `IPython`_ users who would like to -integrate PDFgetX3, PDFgetN3 and PDFgetS3 into their IPython environment. If -you don't plan to customize IPython in such way you can safely skip -this paragraph. - -When pdfgetx3 or pdfgetn3 or pdfgets3 is run in interactive mode, it start -IPython interactive shell and define an extra ``%pdfgetx3``, ``%pdfgetn3`` and ``%pdfgets3`` magic commands within the IPython session. The IPython -magic commands are not valid Python code, but work in a similar -fashion as standard shell commands. The ``%pdfgetx3``, ``%pdfgetn3`` and ``%pdfgets3`` magics can be thus used with the same options and arguments as if run from the shell. This is useful for processing more files, while -preserving all plots or variables that were already created -in an IPython session. - -The ``%pdfgetx3``, ``%pdfgetn3`` and ``%pdfgets3`` magic commands can be defined -permanently so they are available in all IPython sessions. To set -this up - -#. find the ``profile_default/ipython_config.py`` file and open it - in a text editor. If that file does not exists, - create it first by executing :: - - ipython profile create - -#. navigate to the paragraph that contains the - :py:data:`!c.InteractiveShellApp.extensions` and add there - the following line :: - - c.InteractiveShellApp.extensions = ['diffpy.pdfgetx.ipy_magics'] - - There must be no leading indent, i.e., the text must start at the - very first column. diff --git a/static_root/doc/pdfgetx/2.2.1/_sources/interact.rst.txt b/static_root/doc/pdfgetx/2.2.1/_sources/interact.rst.txt deleted file mode 100644 index 0d4fb746..00000000 --- a/static_root/doc/pdfgetx/2.2.1/_sources/interact.rst.txt +++ /dev/null @@ -1,154 +0,0 @@ -Interactive mode -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 -.. py:currentmodule:: _interactive_ - -The interactive mode is activated by using either the -:option:`-i, --interact <-i>` option or a non-empty -:option:`--plot <-p>` option. In the interactive mode -the program starts an `IPython`_ interactive shell and pre-loads several -functions and variables related to the PDF calculation. It also defines -IPython commands ``%pdfgetx3`` and ``%pdfgetn3``, which can be used with -the same syntax as the :program:`pdfgetx3` and :program:`pdfgetn3` in -system shell. -The interactive session is also initialized with all functions from the -:py:mod:`matplotlib.pyplot` module for convenient plotting. -The functions and variables related to PDF processing are: - -.. py:function:: pdfgetter(x=None, y=None, filename='', **kwargs) - - Instance of the :py:class:`!PDFGetter` class which serves as a - low-level function that calculates the PDF. This is a callable - object, which takes as an argument a pair of input arrays for - (*Q*, intensity) or (|twotheta|, intensity) depending on - :confval:`dataformat`. It can be also called with a keyword - argument ``filename=FILE``, which would read the input arrays - from the specified file. When called with no arguments, - it calculates PDF from the last input data. - - :parameters: - * **x** (*numpy.ndarray, optional*) -- - The *Q* or |twotheta| values in powder diffraction pattern. - - * **y** (*numpy.ndarray, optional*) -- - The scattered intensities in powder diffraction pattern - - * **filename** (*str, optional*) -- - The text data file for loading the `x`, `y` values when - they are not specified. - - * **kwargs** (*misc, optional*) -- - Extra keyword arguments that are applied to - the :data:`!config` object, for example ``qmax=20``. - - :return: - A pair of output arrays *(r, G)*. - -.. interactvar:: config - - Instance of the :py:class:`!PDFConfig` class that stores the - :ref:`parameters and input files ` for the program. - Use ``print(config)`` to display the current configuration values. - This is the same object as :data:`!pdfgetter.config`. Configuration - may be changed by setting a respective attribute of the - :interactvar:`!config` object, for example:: - - In [1]: config.qmax = 21 - - The :py:data:`!config` values may be also changed by calling the - :py:func:`pdfgetter` or :py:func:`processfiles` function with a - corresponding keyword argument, for example - ``processfiles(qmax=20, force="once")``. - -.. interactvar:: iraw - iq - sq - fq - gr - - These variables are assigned the input raw intensities and the - intermediate results, stored as matrix rows. The matrix rows - correspond to twotheta1, intensity1, twotheta2, intensity2, etc. - Because matrices are iterated row first, the raw intensities - from all input files can be plotted with the matplotlib plot - function as ``plot(*iraw)``. - - These variables should be considered read-only and are reset - with subsequent PDF calculations. - -.. py:function:: tuneconfig(plotids=None, pdfgetter=None, axeslist=None) - - Show a GUI dialog for interactive tuning of configuration variables. - - :arg plotids: - The string or iterable that specify what interactive plots should be - tuned. By default the same as ``config.plot``. It can be also an - integer index or name of a transformation in :py:func:`pdfgetter` or - a reference to a :py:class:`!Transformation` object. - - :arg pdfgetter: - The optional :py:class:`!PDFGetter` object to be tuned. - This is by default the interactive :py:func:`!pdfgetter` object. - - :arg axeslist: - An optional list of matplotlib Axes for showing interactive plots. - When None, use ``subplot(N, 1, i)`` to create any necessary axes. - - .. note:: - - Changes from :py:func:`!tuneconfig` apply only to the configuration - and results in memory. Use the :py:func:`processfiles` function - to save them to disk. - - .. seealso:: :ref:`my-tuneconfig` tutorial - -.. py:function:: processfiles(filename=None, **kwargs) - - Process all input files again with the current configuration values. - This is a higher-level function than :py:func:`pdfgetter`, as - it also saves output files and produces plots as specified by the - :interactvar:`config` object. - - :arg filename: - One or more input files to be converted to PDFs and saved or - plotted according to the :py:data:`!config` settings. Use the - previous list of input files when not specified. - - :arg kwargs: - An optional keyword arguments to set for the :py:data:`!config` - object, for example ``(force="once", qmax=18)``. - - This function updates the :interactvar:`config.inputfiles ` - list and the :interactvar:`iraw`, :interactvar:`iq`, - :interactvar:`sq`, :interactvar:`fq` and :interactvar:`gr` - interactive variables. - -.. py:function:: clearsession() - - Clear all elements from the :interactvar:`config.inputfiles ` - and also the - :interactvar:`iraw`, :interactvar:`iq`, :interactvar:`sq`, - :interactvar:`fq` and :interactvar:`gr` variables. - - :return: - No return value. - -.. py:currentmodule:: diffpy.pdfgetx -.. autofunction:: loaddata - - This function can be imported from the - :py:mod:`!diffpy.pdfgetx` module. - -.. py:currentmodule:: diffpy.pdfgetx.plotdata -.. autofunction:: plotdata - - This function can be imported from the - :py:mod:`!diffpy.pdfgetx.plotdata` module. - -.. py:currentmodule:: diffpy.pdfgetx -.. autofunction:: findfiles - - This function can be imported from the - :py:mod:`!diffpy.pdfgetx` module. diff --git a/static_root/doc/pdfgetx/2.2.1/_sources/intro.rst.txt b/static_root/doc/pdfgetx/2.2.1/_sources/intro.rst.txt deleted file mode 100644 index a97972cd..00000000 --- a/static_root/doc/pdfgetx/2.2.1/_sources/intro.rst.txt +++ /dev/null @@ -1,71 +0,0 @@ -Introduction -======================================================================== - -diffpy.pdfgetx is a simple yet powerful software for converting X-ray or -neutron powder diffraction data to atomic Pair Distribution Functions -(PDFs). In addition, it also allows the extraction of PDFs from small-angle -scattering (SAS) data. The software includes three command line programs -PDFgetX3, PDFgetN3 and PDFgetS3 for processing X-ray, -constant-wavelength neutron and small-angle diffraction data -respectively. PDFgetX3, PDFgetN3 and PDFgetS3 can be used in a batch -mode to convert a series of data files without user intervention. The -programs can be also run in an interactive mode that allows to control -process parameters and plot the PDFs and any intermediate results. Users -can interactively tune the PDF processing parameters, visualize their effect on the results and adjust them to their optimum values. The programs are bundled with Python library diffpy.pdfgetx for PDF processing functions, which can be used in custom Python scripts. - - -.. index:: license - -License notice ------------------------------------------------------------------------- - -.. include:: ../../LICENSENOTICE.txt - - -.. index:: authors - -Authors ------------------------------------------------------------------------- - -This code was written by members of the Billinge Group at -Columbia University and Brookhaven National Laboratory including -Pavol Juhás, -Timur Davis, -Chia-Hao (Timothy) Liu, -Christopher Wright, -Christopher Farrow, -Connor J. Bracy, -Hung Vuong, -Songsheng Tao, -Simon Billinge. - - -.. index:: citations, references - -References ------------------------------------------------------------------------- - -If you use this program for a scientific research that leads -to publication, we ask that you acknowledge use of the program -by citing the following paper in your publication: - - P. Juhás and T. Davis, C. L. Farrow, S. J. L. Billinge - `PDFgetX3: A rapid and highly automatable program for processing - powder diffraction data into total scattering pair distribution - functions `__, - *J. Appl. Crystallogr.* **46**, 560-566 (2013) - -For research publications that use this software to process neutron -diffraction data we ask you to also cite: - - P. Juhás, J. N. Louwen, L. van Eijck, E. T. C. Vogt, - S. J. L. Billinge - `PDFgetN3: atomic pair distribution functions from neutron - powder diffraction data using ad hoc corrections - `__, - *J. Appl. Crystallogr.* **51** (2018) - -For research publications utilising the sasPDF utility, PDFGetS3, we ask you to acknowledge the use of the program by citing following paper in your publication: - - CH Liu, E. Janke, R. Li, P. Juhás, O. Gang, D. V. Talapin, S. J. L. Billinge - `sasPDF: pair distribution function analysis of nanoparticle assemblies from small-angle-scattering data `__. diff --git a/static_root/doc/pdfgetx/2.2.1/_sources/options.rst.txt b/static_root/doc/pdfgetx/2.2.1/_sources/options.rst.txt deleted file mode 100644 index c02220f2..00000000 --- a/static_root/doc/pdfgetx/2.2.1/_sources/options.rst.txt +++ /dev/null @@ -1,370 +0,0 @@ -Options and parameters -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 - -PDFgetX3, PDFgetN3 and PDFgetS3 are very flexible in allowing users to customize -the actions of the program. They have a number of parameters that can -be specified either in configuration file or as command line options. -Here is a complete description of the parameters and options used by -either program. - - -.. Note :: - - The command line options start with a leading "-" and can - be only used as command line arguments when starting the - :program:`pdfgetx3` program. Within configuration file the parameter - names are plain words without any leading dashes. Finally, - parameters can be also set in the interactive mode as attributes of - the :interactvar:`config` object, but the assignments must be valid - Python statements. Here are examples of setting composition of - a processed specimen using each of these forms: - - #. assigned in configuration file:: - - ... - composition = CaTiO3 - ... - - #. set as a command-line option when starting :program:`pdfgetx3` or - :program:`pdfgetn3`:: - - pdfgetx3 --composition=CaTiO3 - - #. set in the IPython interactive mode:: - - pdfgetx3 -i - ... - In [1]: config.composition = "CaTiO3" - - -Program operation ------------------------------------------------------------------------- - -.. option:: -h, --help - - Display a brief usage information with a list of command line options - and exit. - -.. option:: -V, --version - - Display the program version and exit. - -.. option:: --manual - - Open this manual in a Web browser and exit. - -.. option:: -f, --find -.. _my-findpatterns: - - Select input files that match all patterns. The command - line arguments are by default taken as input files. However, - with the :option:`!--find` option they are processed as - file patterns and the matching files are then used as inputs. - The input files are by default searched in the current directory - unless there is a path entry (e.g., :file:`data/`) that - selects a different search path. The search patterns are - interpreted as fixed strings, all of which must be present - in the file name. A single argument ``+`` starts - a new group of patterns to match more files that are not - covered by one set of patterns. Additional pattern - groups reuse the current search path unless they provide - their own path value. Pattern groups containing only - a path entry reuse file patterns from the last group. - When pattern groups overlap the repeated matches are ignored - to make the resulting list of files unique. Files starting - with ``.`` are ignored unless there is ``^.`` pattern - that explicitly matches them. The search - syntax provides the following special patterns: - - .. tabularcolumns:: |l|p{0.75\textwidth}| - - +---------+------------------------------------------------------------+ - | ^ | match at the beginning of the string, i.e., ``^start`` | - | | matches only filenames that start with "start". | - +---------+------------------------------------------------------------+ - | $ | match at the end of string, for example, ``.chi$`` selects | - | | file names ending with ".chi". A ``$`` on its own | - | | matches every string and can be used to select all files. | - +---------+------------------------------------------------------------+ - | | match number *N* preceded by any number of leading zeros, | - | | e.g., ``<7>`` would match in "f7.chi", "f007.chi", but not | - | | in "f77.chi". | - +---------+------------------------------------------------------------+ - | | match an integer range from *N* to *M* inclusive. | - | | The matched number may have one or more leading zeros. | - +---------+------------------------------------------------------------+ - | <7-> | match number 7 or larger. | - +---------+------------------------------------------------------------+ - | <-7> | match number 7 or smaller. | - +---------+------------------------------------------------------------+ - | <-> | match any integer number. | - +---------+------------------------------------------------------------+ - | \+ | start a new pattern group, for example, ``.chi$ + .dat$`` | - +---------+------------------------------------------------------------+ - | / | set search path. An argument containing the ``/`` symbol | - | | is taken as the search path, for example, ``data/`` or | - | | ``./``. Each pattern group may provide its own search | - | | path effective for that and any subsequent pattern group. | - +---------+------------------------------------------------------------+ - - The ``^$<>`` characters are often special to Unix or Windows - command shells, therefore they need to be enclosed in double - quotes (\\") when used on command line. - - .. seealso:: tutorial on :ref:`my-findexamples` - -.. option:: -l, --list - - List all input files and exit. This is useful with the - :option:`!--find` option to verify if input files - are matched as intended. - - -Configuration file options ------------------------------------------------------------------------- - -.. option:: -c CONFIG, --config=CONFIG - - Read custom configuration file after loading the default ones. - Do not load any configuration file when "NONE". - -.. option:: -s NAME, --section=NAME - - Load the custom configuration file section ``[SectionName]`` after - loading the ``[DEFAULT]`` section. This is useful for creating - several configuration variants in a single configuration file. - -.. option:: --createconfig=FILE - - Write template configuration to a new FILE and exit. Write - to the standard output when FILE is "-". - -See also the :ref:`configuration file ` section -for further details. - -.. _my-ioparameters: - -Input and output options ------------------------------------------------------------------------- - -.. confval:: inputfile - - This parameter allows to specify one or more input files in the - configuration file, one file per line. The :confval:`!inputfile` - is only used if no input files were provided on the - :program:`pdfgetx3` or :program:`pdfgetn3` command line. - -.. confval:: dataformat -.. option:: --format=FORMAT - - Format of input files. Available formats are: ``twotheta``, ``QA``, - ``Qnm`` corresponding to a two-column text data where the first - column is either the scattering angle |twotheta| in degrees, *Q* in - inverse ångströms or *Q* in inverse nanometers. - -.. confval:: backgroundfile -.. option:: -b FILE, --background=FILE - - Optional datafile with background intensities from an empty sample - holder. It must be in the same dataformat as other input files. - -.. Note :: - - The following input is only used in ``sas`` mode. - -.. confval:: formfactorfile -.. option:: -ff FILE, --formfactorfile=FILE - - Form factor intensities of the scatterers. This is required for ``sas`` mode. The form factor file is expected to be in two-column format with (Q, f2avg) data or three-column format with (Q, f2avg, favg2) data. The unit of Q is required to be A^-1. - -.. _my-datapath: -.. confval:: datapath -.. option:: -d DATAPATH, --datapath=DATAPATH - - One or more extra directories to be searched for input or - background data files. The :option:`!-d` option can be specified - several times to add more directories, these are prepended in front - of any default value. Within configuration file the datapath - directories have to be listed each on a separate line. - - A special value "NONE" (or "none") clears any previously defined - paths and only the further paths, if any, would be searched for - inputs. - -.. confval:: output -.. option:: -o OUTPUT, --output=OUTPUT - - Output file name, write to the standard output when "-". The - :option:`-t, --outputtypes <-t>` option controls what results are - being saved. Normally the OUTPUT is used as a custom basename for - the output files. The OUTPUT may contain @f, @h, @r, @e, @t, @b, @o - tokens, which are expanded as follows: - - ===== ================== ======================================= - token example definition - ===== ================== ======================================= - @h dir1/dir2 the input file directory or "." - @r dir1/dir2/filename the input path with extension removed - @e dat the input file extension without "." - @t filename.dat the tail component of the input file - @b filename the tail component with extension removed - @o gr the output extension iq, sq, fq or gr - ===== ================== ======================================= - - An empty value works the same as "@b.@o" and saves the data - in the current directory with a proper extension for the - saved results. When "@o" is not present in the OUTPUT, it is - appended as a default filename extension. - -.. confval:: outputtypes -.. option:: -t TYPES, --outputtypes=TYPES - - Result types to be saved, one or more comma separated values. - Supported values are "iq", "sq", "fq", "gr", corresponding to the - |IQ|, |SQ|, |FQ| and |Gr| curves; these are also used as output - file extensions. - - Result files are not written when empty, "none" or "NONE". - -.. confval:: force -.. option:: --force=FORCE - - Overwrite existing output files. By default the output - files are not written if they already exist. Possible values - in a configuration file are "true", "yes", "on", "1" or - "false", "no", "off", "0" or "once". The special value "once" - permits one overwrite and then resets ``config.force`` to - ``False``. Note that in interactive mode the values assigned - to ``config.force`` are converted to Python :py:class:`bool` - unless equal to "once". - - -.. _my-pdfparameters: - -PDF parameters ------------------------------------------------------------------------- - - -.. confval:: mode -.. option:: --mode=STRING - - The PDF conversion mode, i.e., the name of the - :py:func:`.pdfgetter` setup. The available modes correspond - to the radiation type used in powder diffraction experiment and can - be "xray" or "neutron". - -.. confval:: wavelength -.. option:: -w FLOAT, --wavelength=FLOAT - - X-ray wavelength in ångströms. This value is required - for the "twotheta" dataformat in order to convert the scattering - angles |twotheta| to a momentum transfer *Q*. For other data formats - the wavelength is not necessary and may be left undefined. - -.. confval:: twothetazero -.. option:: --twothetazero=FLOAT - - Position of the zero scattering angle in diffractometer degrees. - This parameter corrects for a constant offset in the - measured |twotheta| values. When loading configuration file - it is assumed 0 unless specified otherwise. This parameter - is only effective for the "twotheta" dataformat. - -.. confval:: composition -.. option:: --composition=STRING - - Chemical composition of the sample. Supported formats are - "PbTi0.5Zr0.5O3", "Pb 1 Ti 1/2 Zr 1/2 O 3" or "CH3 (CH2)3 OH". - Space characters are ignored, unit counts can be omitted, but it is - important to use a proper upper and lower case in atom symbols. - Elements can appear several times in the formula, e.g., "CH3 CH3", - and the formula may contain parentheses or fractional - stoichiometries. - -.. confval:: bgscale -.. option:: --bgscale=FLOAT - - Scaling of the background intensities loaded from the - :confval:`backgroundfile`, by default 1. - -.. confval:: rpoly -.. option:: --rpoly=FLOAT - - *r*-limit for the maximum frequency in the |FQ| correction polynomial. - The PDF is unreliable at shorter *r*, however a - very small :confval:`!rpoly` would disable polynomial correction and - give noisy PDF. - Larger values produce closer fits with a higher degree polynomial, - but when too large, they might smooth-out a useful signal in the - data. The default is 0.9. - -.. confval:: qmaxinst -.. option:: --qmaxinst - - The *Q* cutoff for the meaningful input intensities in inverse - ångströms. Some data files may contain trailing zeros - or unreliable intensities at the upper bound of the detector range. - The :confval:`!qmaxinst` defines a threshold for unreliable data. - The parameter is also used as an upper boundary for the polynomial - fit correction of the |SQ| data. - -.. confval:: qmin -.. option:: --qmin - - The lower *Q*-limit for the Fourier transformation of the |FQ| curve - in inverse ångströms. - -.. confval:: qmax -.. option:: --qmax - - The upper *Q*-limit for the Fourier transformation of the |FQ| curve - in inverse ångströms. This is essentially a limit, where sample - signal decays to the level of data noise. - -.. confval:: rmin -.. option:: --rmin=FLOAT - - Lower bound of the *r*-grid for the calculated PDF in ångströms. - -.. confval:: rmax -.. option:: --rmax=FLOAT - - Upper bound of the *r*-grid for the calculated PDF in ångströms. - -.. confval:: rstep -.. option:: --rstep=FLOAT - - Spacing of the *r*-grid for the calculated PDF in ångströms. - - -Other parameters ------------------------------------------------------------------------- - -.. confval:: plot -.. option:: -p TYPES, --plot=TYPES - - Plot the specified results. A comma separated list with one or - more items from "iq", "sq", "fq", "gr". No plot is produced when - empty, "none" or "NONE". Setting this option turns on the - interactive mode. - -.. confval:: interact -.. option:: -i, --interact - - Start an IPython interactive session after processing all files. - Useful for tuning the configuration parameters or interactive - plotting. This is always on when plot option has been set. - See also :doc:`interact` for further details. - -.. confval:: verbose -.. option:: --verbose=VALUE - - Level of detail for the program to report about its actions. - Possible values are "error", "warning", "info", "debug", "all" or an - integer number from 0 to 5. Messages are completely suppressed when - 0, all messages are printed when verbose is 5 ("all") or higher. - This option is useful for diagnostics of any unexpected behavior - in the program. diff --git a/static_root/doc/pdfgetx/2.2.1/_sources/plotdata.rst.txt b/static_root/doc/pdfgetx/2.2.1/_sources/plotdata.rst.txt deleted file mode 100644 index d1c02156..00000000 --- a/static_root/doc/pdfgetx/2.2.1/_sources/plotdata.rst.txt +++ /dev/null @@ -1,161 +0,0 @@ -.. index:: plotdata (program) -.. _cmd-plotdata: - -The plotdata program -======================================================================== - -.. include:: abbreviations.txt -.. program:: plotdata - -The PDFgetX3 software includes a simple stand-alone utility -:program:`plotdata` for plotting text data files. In most cases -this program can be invoked from a command-shell as :: - - plotdata file1.dat file2.dat - -which plots the numerical data from the text files :file:`file1.dat`, -:file:`file2.dat` together in a single graph. By default the first -column is used as an *x* variable and the second column is used for the -*y* values. After displaying the plot the program starts an `IPython`_ -interactive session allowing the user to modify or save plots. The -IPython session is initialized with the :data:`!filenames` variable -containing a list of plotted files. It also pre-loads the -|plotdata| and |findfiles| functions just as in PDFgetX3 -interactive session. The :py:func:`!plotdata` -function works in a similar way as the :program:`plotdata` program, -just its arguments need to be passed as Python function arguments -instead of command-line options. Thus an equivalent call of the -:py:func:`!plotdata` function would be:: - - In [1]: plotdata(['file1.dat', 'file2.dat']) - - -Selecting files ------------------------------------------------------------------------- - -The :program:`plotdata` program includes a file searching feature -that is useful for selecting a set of files in large -directories. It is also convenient for Windows operating systems, -where the command prompt cannot do filename expansion for patterns -such as ``*.dat``. The file search feature is controlled by the -following options: - -.. option:: -f, --find - - Use command line arguments as filename patterns and plot all matching - files. This option works in the same way as for - :program:`pdfgetx3`, for full details see the - :option:`pdfgetx3 --find ` documentation. Note that - within command line the special patterns ``^$<>`` need to be quoted - in double quotes (\\") so they are not processed by command shell. - -.. option:: -l, --list - - List the input files and exit. This is useful in conjunction - with the :option:`!-f, --find` option to check if data files - are selected as intended. - -Assuming the current directory contains 20 files named -:file:`file1.dat`, :file:`file2.dat`, ..., :file:`file20.dat`, -the plotting of files 9 to 13 could be done (with a check listing) -as follows :: - - $ plotdata -fl "<9-13>.dat" - file9.dat - file10.dat - file11.dat - file12.dat - file13.dat - $ plotdata -f "<9-13>.dat" - -Within an interactive IPython session the equivalent plot could be -produced by combining the |plotdata| and |findfiles| functions as :: - - In [1]: plotdata(findfiles("<9-13>.dat")) - - -Selecting x and y data ------------------------------------------------------------------------- - -The :program:`plotdata` program provides several ways of selecting -columns for *x* or *y* data and for specifying plot markers or line -formats. The columns can be specified using their integer index, -but one needs to keep in mind the index of the first column is "0" -as per Python indexing conventions. Here is a list of options -supported by the plotdata program (and function): - - -.. option:: -x X - - index or name of the *x*-column to plot. See the :option:`-y` option - for the supported syntax, but note that ``X`` may select only one - column. When set to "." use the data-row index for *x*. - -.. option:: -y Y - - index or name of the *y*-column or columns to plot. The ``Y`` column - specification can be a comma separated list of indices, column names - or Python-like ranges, for example "1,2", "G", "1:4" (START:STOP, - same as "1,2,3"), "1:4:2" (START:STOP:STEP, same as "1,3"), or - "-2:" (same as "-2,-1", i.e, the last 2 columns). Because column - indexing starts at "0" the second column must be specified as "1". - - The column names work if the data section in the file is preceded by - a headline of unique column names, for example:: - - x square cube - 1 1 1 - 2 4 8 - 3 9 27 - 4 16 64 - - For such data file the plotdata program will recognize column names - "x", "square" and "cube" and an implicit "." for row index. - -.. option:: -s STYLE, --style=STYLE - - optional plot format specification. See the - :func:`matplotlib.pyplot.plot` function - for a list of available formats. - -.. option:: -L LOG, --log=LOG - - axes to be plotted with logarithmic scaling, for example, "x", "y" or - "xy". Axes not listed in ``LOG`` will use linear scaling. - -.. option:: -h, --help - - display a brief usage info and exit. - -.. option:: -V, --version - - show program version and exit. - -.. option:: --manual - - Open this manual page in a Web browser and exit. - - -Examples ------------------------------------------------------------------------- - -The examples directory :file:`plotdata` contains a :file:`sincos.dat` -file that has 3-columns of values labeled as "x", "sin" and "cos". -Here are several examples of the :program:`plotdata` capabilities -when used from command line - the user is encouraged to try them out:: - - plotdata sincos.dat - plotdata -y 1,2 sincos.dat - plotdata -x . -y 0:3 sincos.dat - plotdata -y cos sincos.dat - plotdata -x sin -y cos -sr-- sincos.dat - -An equivalent usage from a general IPython session would be:: - - ipython --matplotlib=auto - In [1]: from diffpy.pdfgetx.plotdata import plotdata - In [2]: plotdata('sincos.dat') - In [3]: plotdata('sincos.dat', y=[1,2]) - In [4]: plotdata('sincos.dat', x='.', y=':3') - In [5]: plotdata('sincos.dat', y='cos') - In [6]: plotdata('sincos.dat', x='sin', y='cos', style='r--') diff --git a/static_root/doc/pdfgetx/2.2.1/_sources/quick-start.rst.txt b/static_root/doc/pdfgetx/2.2.1/_sources/quick-start.rst.txt deleted file mode 100644 index 0b2fffd1..00000000 --- a/static_root/doc/pdfgetx/2.2.1/_sources/quick-start.rst.txt +++ /dev/null @@ -1,163 +0,0 @@ -Quick-start guide -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 - -This guide assumes that the software has been correctly installed and -its command line programs PDFgetX3, PDFgetN3 and PDFgetS3 can be -executed by typing :program:`pdfgetx3`, :program:`pdfgetn3`, or -:program:`pdfgets3` in a shell window. Please, refer to the :doc:`installation ` section if this is not working yet. - -.. index:: pdfgetx3 (program) -.. _cmd-pdfgetx3: - -pdfgetx3 command ------------------------------------------------------------------------- - -The pdfgetx3 program is a command-line application, therefore all -the input files and run-parameters are supplied either as command-line -arguments or through a configuration file. In general, the pdfgetx3 is -executed from a command shell as :: - - pdfgetx3 [options] input1 input2 ... inputN - -The :file:`inputN` stands for an input powder diffraction data. The -:file:`inputN` file is a simple two-column text file, where the first -column corresponds to either the |twotheta| diffraction angle, or a -momentum transfer, *Q*, in inverse nanometer or inverse ångström units. -The second column contains the corresponding X-ray intensities. The -input file may start with a header containing comments or metadata -related to the measurement. PDFgetX3 will ignore any text leading to a -long two-column section. The example input files in this manual were -created with the -`FIT2D program `_ using -its "chi" output format, thus we will also refer to them as "chi-files". -A typical content of a "chi" file looks as folows: - -.. code-block:: none - - Pt_bulk-00055.tif: 2-theta Scan - 2-Theta Angle (Degrees) - - 1465 - 2.0003892E-02 0.0000000E+00 - 6.0011677E-02 0.0000000E+00 - 1.0001946E-01 0.0000000E+00 - 1.4002724E-01 0.0000000E+00 - 1.8003502E-01 0.0000000E+00 - ... - -The command-line options are arguments that start with a dash "-" and -are used to specify run-parameters or modify the program behavior. The -options can be specified in a short form that consists of a dash and -a single character, or in a long, more descriptive format starting with -a doubled dash ``--``. Options may require values. For short options, -the value may be joined to the option string, for example -:option:`!-w0.142774`, while for the long options it has to be separated -with an equal sign, e.g., :option:`!--wavelength=0.142774`. Although -all the PDF calculation parameters can be passed as command line -options, it is often more convenient to set them in a configuration -file. When run parameter is present both in a configuration file and -as command-line option, the command-line value takes precedence. The -command-line options are all described in the :doc:`options` section of -this manual. A brief summary of options can be also displayed by -executing :: - - pdfgetx3 --help - -The best way of getting familiar with PDFgetX3 is to process -the example diffraction data described in the :doc:`tutorial`. -In general, the first step is to create a commented configuration file ``pdfgetx3.cfg`` using:: - - pdfgetx3 --createconfig=pdfgetx3.cfg - -The configuration file can have any name, but it is preferable -to use either :file:`pdfgetx3.cfg` or :file:`.pdfgetx3.cfg`, -for these files are automatically loaded by PDFgetX3. All -other configuration files must be passed explicitly to the program -using the :option:`-c, --config <-c>` option. - -Open the pdfgetx3.cfg file in a **text** editor. The lines that -start with a hash mark ``#`` are comments and are not used. The lines -starting with a right brace ``[`` denote sections in the configuration -file. The active lines are all formatted as -"NAME=VALUE". Although PDFgetX3 has many options, in general only a few -of them are critical for the PDF calculation: - -* :confval:`dataformat` -- specifies the input data format - -* :confval:`wavelength` -- radiation wavelength in Å required for the - "twotheta" format. - -* :confval:`composition` -- chemical composition of the sample - -* :confval:`qmaxinst` -- upper *Q* boundary for a meaningful measurement - intensities. - -* :confval:`qmax` -- *Q*-cutoff for the Fourier transformation that - yields the PDF. - -Save the updated configuration file and run pdfgetx3 on the input data -:file:`FILENAME.chi` as :: - - pdfgetx3 --verbose=info -t gr FILENAME.chi - -Here the :option:`--verbose=info <--verbose>` option makes pdfgetx3 -print -more information about its operation. This helps to verify -if the configuration file is indeed loaded and if the parameter -values are assigned as intended. The PDFgetX3 will not write -any output files unless told so. The :option:`-t gr <-t>` option -tells the program to save the final |Gr| curve as a -:file:`FILENAME.gr` file in the working directory. - -The saved .gr file contains a header with all the calculation -parameters and the input file name. The .gr file can be therefore -also used as a configuration file in order to redo the same -calculation :: - - pdfgetx3 -c FILENAME.gr --plot=fq,gr - -Note this command does not include any .chi file and this will as -a result process the previously used input :file:`FILENAME.chi`. -The :option:`--plot=fq,gr <-p>` option tells PDFgetX3 to -display 2 plots for the reduced structure function |FQ| and the -final PDF |Gr|. The :option:`!--plot` option also implies an -:doc:`interactive mode ` -therefore the program does not exit, but starts an -interactive `IPython`_ session. To exit the interactive mode, -type ``exit()`` and press Enter. - -.. index:: pdfgetn3 (program) -.. _cmd-pdfgetn3: - -pdfgetn3 command ------------------------------------------------------------------------- - -The pdfgetx3 and pdfgetn3 programs operate in a very similar fashion -apart from being set to assume X-ray and neutron data respectively. -The type of the scattering data can be also specified using the -:option:`--mode` option. Running ``pdfgetn3`` is nearly identical -to executing ``pdfgetx3 --mode=neutron``. The only difference between -these commands is that pdfgetx3 checks for configuration files -:file:`pdfgetx3.cfg` and :file:`.pdfgetx3.cfg`, whereas -pdfgetn3 looks for :file:`pdfgetn3.cfg` and :file:`.pdfgetn3.cfg`. - -.. index:: pdfgets3 (program) -.. _cmd-pdfgets3: - -pdfgets3 command ------------------------------------------------------------------------- - -The pdfgets3 program is virtually the same as its counterparts for x-ray -(pdfgetx3) and neutron (pdfgetn3) diffraction data. The only difference -is that instead of referencing the well documented x-ray or neutron -scattering form factor data, a user-defined form factor data is used -for getting the PDF from a small-angle scattering (SAS) data. This -behavior is enabled by specifying ``mode = sas`` in the configuration -file or in the command line tool. The pdfgets3 program by default -searches for a configuration named :file:`pdfgets3.cfg` and -:file:`.pdfgets3.cfg` in order, when no configuration file is specified. - -Please refer to the :doc:`tutorial section ` for a step-by-step processing of the example data files and for demonstration of the capabilities in PDFgetX3, PDFgetN3 and PDFgetS3. diff --git a/static_root/doc/pdfgetx/2.2.1/_sources/release.rst.txt b/static_root/doc/pdfgetx/2.2.1/_sources/release.rst.txt deleted file mode 100644 index 7ede93fa..00000000 --- a/static_root/doc/pdfgetx/2.2.1/_sources/release.rst.txt +++ /dev/null @@ -1,3 +0,0 @@ -.. index:: release notes - -.. mdinclude:: ../../CHANGELOG.md diff --git a/static_root/doc/pdfgetx/2.2.1/_sources/tutorial.rst.txt b/static_root/doc/pdfgetx/2.2.1/_sources/tutorial.rst.txt deleted file mode 100644 index c87a993f..00000000 --- a/static_root/doc/pdfgetx/2.2.1/_sources/tutorial.rst.txt +++ /dev/null @@ -1,807 +0,0 @@ -Tutorial -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 -.. index:: example files -.. py:currentmodule:: diffpy.pdfgetx - -In this tutorial we will convert several X-ray powder diffraction -patterns to corresponding PDFs. Open a terminal on a Unix-based system -or a Command Prompt on Windows and navigate to the :file:`examples` -folder included with the PDFgetX3 distribution. The :file:`examples` -folder can be found in the parent "doc" directory relative to this -document or another option is to just search your file system for -one of the input files mentioned below. -The example files are also available at -|zipped-examples|. - - -.. index:: examples - -Nickel X-ray PDF ------------------------------------------------------------------------- - -predefined configuration file -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - - -Change to the :file:`Ni` directory. The file named -:file:`ni300mesh_300k_nor_1-5.chi` contains powder X-ray data -measured from nickel at the Advanced Photon Source beamline -6ID-D. The file contains two columns for the |twotheta| scattering -angles and X-ray intensities. The second file -:file:`kapton_bgrd_300k_nor_2-3.chi` contains the background -measurement, i.e., the intensities from an empty capillary. -Finally, the :file:`pdfgetx3.cfg` contains a complete configuration -parameters for converting the powder pattern to a PDF. Since all -processing parameters are already defined in the configuration file, -the first PDF calculation is very simple and involves running the -:ref:`pdfgetx3 ` program -with the powder data file as an argument:: - - $ pdfgetx3 ni300mesh_300k_nor_1-5.chi - -For the first run there should be no output on the screen, -however a new file, :file:`ni300mesh_300k_nor_1-5.gr` should appear -in the work directory. -We can use the :ref:`plotdata ` program, -included with this software, to plot the output data:: - - $ plotdata ni300mesh_300k_nor_1-5.gr - -This will open a graph window and start an `IPython`_ interactive session. -To exit and close the figure, type ``exit()`` on the IPython prompt. -Let's run the program again, but now with a -:option:`--verbose=info <--verbose>` -option, to show more details about the program actions. :: - - $ pdfgetx3 --verbose=info ni300mesh_300k_nor_1-5.chi - - INFO:applying pdfgetx3 defaults - INFO:set config.mode = xray - INFO:searching for default config file /home/user/.pdfgetx3.cfg - INFO:searching for default config file .pdfgetx3.cfg - INFO:searching for default config file pdfgetx3.cfg - INFO:loaded default config file pdfgetx3.cfg - INFO:reset config.twothetazero = 0.0 - INFO:parsing config file section [DEFAULT] - INFO:set config.dataformat = twotheta - INFO:set config.backgroundfile = kapton_bgrd_300k_nor_2-3.chi - INFO:set config.outputtypes = gr - INFO:set config.wavelength = 0.142774 - INFO:set config.composition = Ni - INFO:set config.qmaxinst = 26.5 - INFO:set config.qmax = 26.0 - INFO:set config.rmin = 0.0 - INFO:set config.rmax = 30.0 - INFO:set config.rstep = 0.01 - INFO:finished parsing config file - INFO:processing command line options - INFO:set config.verbose = info - INFO:finished with command line options - INFO:using 1 input files from the command line. - INFO:configuring PDFGetter mode 'xray' - INFO:calling config_xray - INFO:started PDF processing. - INFO:processing 'ni300mesh_300k_nor_1-5.chi' - INFO:resolved output file '' as 'ni300mesh_300k_nor_1-5.gr' - WARNING:ni300mesh_300k_nor_1-5.gr already exists. - WARNING:Use "--force=yes" or "--force=once" to overwrite. - INFO:elapsed time: 0.095 - -Here we can see what configuration files are searched, which of them -get loaded and what are the effective values of the processing -parameters. Unless the :option:`!--verbose` option is in effect, the -program will show only messages that have either WARNING or ERROR -importance. The warning line above indicates no output has been -written, because that file already exists. This safety check can be -overruled with the :option:`--force=yes <--force>` option, upon -which pdfgetx3 would overwrite any existing files. - -PDFgetX3 output files start with a header that lists all the processing -parameters and can be used as a valid configuration file with the -:option:`-c` option. Another option, :option:`--plot=[iq,sq,fq,gr] -<-p>` turns on plotting of the final PDF or of some other result. A -side effect of the :option:`!--plot` option is that pdfgetx3 starts in -an interactive mode, so the user can manipulate or save the plots. To -put it all together, we are now going to redo the original PDF and plot -its reduced total scattering function |FQ| and the PDF curve |Gr|. This -time the chi file is not necessary, because the input file is already -listed in the gr file that is now used as a custom configuration:: - - $ pdfgetx3 -c ni300mesh_300k_nor_1-5.gr --plot=fq,gr - - WARNING:ni300mesh_300k_nor_1-5.gr already exists. - WARNING:Use "--force=yes" or "--force=once" to overwrite. - - Variables related to PDF processing: - - pdfgetter -- PDFGetter used for calculation. - config -- configuration data used by PDFGetter. - See config.inputfiles for a list of inputs. - iraw -- matrix of input raw intensities with 2 rows per file. - iq sq fq gr -- intermediate results per each input file stored - as matrix rows. - - Functions: - - tuneconfig -- dynamically tune configuration variables. - processfiles -- process specified data files. - clearsession -- clear all elements from the inputfiles, iraw, - iq, sq, fq and gr variables. - plotdata -- plot all or selected columns from a text data file. - loaddata -- load all or selected columns from a text data file. - findfiles -- search for files matching the specified patterns. - - Use "%pdfgetx3" for a fresh run without exiting IPython. - In [1]: - -This will open a plot figure similar to - -.. image:: images/nickelfqgr.png - -Because of the :doc:`interactive mode ` implied by plotting, -the program enters an IPython session. -The IPython environment is preloaded with several extra functions -and variables related to the PDF processing. For example, the -:interactvar:`config` variable stores all the configuration parameters, -and its content can be displayed with the :py:func:`print` -function as :: - - In [1]: print(config) - - configfile = ni300mesh_300k_nor_1-5.gr - configsection = DEFAULT - dataformat = twotheta - ... - qmax = 26.0 - ... - -The :py:func:`.processfiles` function allows to redo the -whole calculation and plotting process for additional input files or -for new parameter values. To plot the |FQ| and |Gr| -curves calculated at |Qmax| = 22 |Ainv|, we can call -:py:func:`!processfiles` and pass it a keyword argument for -the new qmax as follows:: - - In [2]: processfiles(qmax=22) - - # the qmax parameter was updated to a new value, thus - In [3]: config.qmax - Out[3]: 22 - -There should be now two lines in each plot axis corresponding to -the results at |Qmax| equal 26 and 22 |Ainv|. To exit the program, -type ``exit()``. - - -processing from scratch -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -We have already encountered the command-line :option:`option -c <-c>` -for specifying a custom configuration file. A special argument "NONE", -will make pdfgetx3 ignore any configuration files and start up in a -default state. We can use this feature to process the nickel PDF as if -we did not have any configuration file:: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi - - WARNING:Nothing to do, use "-t" or "--plot" options. - ERROR:Configuration error: wavelength not specified. - ERROR:See "--help" for more hints. - -There is an error, for the wavelength is necessary to convert -the scattering angle |twotheta| to momentum transfer *Q*. The -X-ray wavelength was 0.142774 Å, which can be passed with the -:option:`-w, --wavelength <-w>` option:: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 - - ... - ERROR:Configuration error: Chemical composition not known. - ERROR:See "--help" for more hints. - -There is still an error. The PDF calculation needs an average -X-ray scattering factor of the material, which is obtained from -sample chemical composition. The composition can be specified -with the :option:`--composition` option. The example -below uses a "\\\\" character to indicate the command continues -on the next line. Such syntax works in Unix terminals, but -on Windows the command has to be typed all on a single line:: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \ - --composition=Ni - - WARNING:Nothing to do, use "-t" or "--plot" options. - ... - -There was no error message this time, but the program complains -about a lack of action. The pdfgetx3 program does not write any results -unless instructed by the :option:`-t, --outputtypes <-t>` option. -The outputtypes option recognizes the following result types: -"iq", "sq", "fq", "gr". One or more of these type strings, -separated by a comma, can be included with the -:option:`!-t` option, which will produce the corresponding -output files. An empty string, such as ``-t ""``, or ``-t NONE`` -may be used to clear any outputtypes defined in the configuration file, -and avoid the unseemly file-exists warnings. - -At this point, we will not write any output files, but will use the -:option:`--plot <-p>` option to display the calculated curves. The -:option:`!--plot` accepts the same arguments as outputtypes, so to -display the |FQ| and |Gr| curves we shall run :: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \ - --composition=Ni --plot=fq,gr - - WARNING:qmaxinst reset to last nonzero point qmaxinst=28.0865680161 - WARNING:qmax reset to the data boundary qmaxinst=28.0865680161 - -which should open the following plot window: - -.. image:: images/nickelfqgrnoisy.png - -The graphs look terrible. The PDF is very noisy and the |FQ| curve -shows a sudden break at about 27 |Ainv|. What happened? The powder -intensities are inaccurate at a very top of the detector angular range. -The interactive session is setup with -:interactvar:`iraw`, :interactvar:`iq`, :interactvar:`sq`, -:interactvar:`fq`, :interactvar:`gr` -variables for the original raw data and intermediate results. We -are going to plot the "iq" variable that has the input intensities -resampled on the *Q* grid. The matplotlib function -:py:func:`~matplotlib.pyplot.clf` clears the figure, -the iq variable is a two-row matrix with *Q* and *I* rows, and the -:py:func:`~matplotlib.pyplot.axis` -function lets us zoom to a given range:: - - In [1]: clf() - In [2]: plot(iq[0], iq[1]) - Out[2]: [] - In [3]: axis([20, 29, 0, 3000]) - Out[3]: [20, 29, 0, 3000] - -The graph shows a sudden drop in the raw intensities at 27 |Ainv|. -The :confval:`qmaxinst` variable defines a *Q* cutoff for a meaningful -instrument intensities and, to be on a safe side, we are going to set -it to 26.5 |Ainv| :: - - In [4]: processfiles(qmaxinst=26.5) - WARNING:qmax reset to the data boundary qmaxinst=26.5 - -The updated curves looks reasonable without any oscillations and -breakpoints. The :py:func:`.tuneconfig` function provides a -GUI-driven way for visualizing the processing parameters and their -effect on the results. Type ``tuneconfig()`` to execute the function, -which should open a new window with several sliders. Try to move -different sliders and see how do the |FQ| and |Gr| curves change. -The :confval:`rpoly` parameter controls the degree of data-correction -polynomial and is an approximate low-*r* bound of reliable *G* -values. Once the parameters are tuned, they may be set to -exact values. We will also turn on the writing of the |Gr| -curve and save it to an output file :file:`nicmd.gr`:: - - In [14]: config.qmax = 26 - In [15]: config.outputtypes = 'gr' - In [16]: config.output = 'nicmd' - In [17]: processfiles() - - -Platinum X-ray series ------------------------------------------------------------------------- - -PDFgetX3 has been designed to handle large series of data files. -With the fast area-detectors it is easy to measure hundreds of X-ray -patterns in a time or temperature series. Normally, these input -files need to be entered as command line arguments to the pdfgetx3 -program. This is usually no problem with Unix-like shells, which -expand filename patterns to a list of matching files. -However, such file generation is in general not available on Windows. -The input file names tend to include scan numbers which are useful -for selecting desired data, yet even with Unix shells it is -difficult to match a range of scan numbers -(`z-shell `_ being a notable exception). - -.. _my-findexamples: - -matching input files -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -The :program:`pdfgetx3` program includes a built-in function for finding -a set of input files. The command line arguments are normally taken as -input file names. However, if the :option:`-f, --find <-f>` option is -present, the arguments are understood as patterns and the program looks -for files that match ALL of them. Another option -:option:`-l, --list <-l>` makes pdfgetx3 print out the matching files -without any other action, which can be used to verify if the patterns -match intended files. - -We will try out this file search on platinum example files. Open a -terminal and navigate to the :file:`Pt` directory. There should be a -:file:`series` subdirectory with 6 chi files indexed from 903 to 908. -At first, let's stay in the :file:`Pt` directory and run the following -command :: - - $ pdfgetx3 --list --find - - Pt_bulk-00055-pdfgetx2.gr - Pt_bulk-00055-pdfgetx3.gr - Pt_bulk-00055.chi - empty_capillary-00032.chi - pdfgetx3.cfg - plotpdfcomparison.py - -Without any patterns the file search matches all files in the current -directory. Now let's try to add name patterns. There are few special -patterns, for example ``^`` matches at the beginning of the filename, ``$`` at the end and ```` matches a range of integer values from -*N* to *M*. The patterns containing ``^$<>`` need to be quoted as -these characters have special meaning in the shell. Here are some -examples how it works. - -Filenames containing "y":: - - $ pdfgetx3 --list --find y - empty_capillary-00032.chi - plotpdfcomparison.py - -Filenames that containing both "y" and "chi", here we use the -options :option:`!--list` and :option:`!--find` in an abbreviated -form :option:`!-l` and :option:`!-f`:: - - $ pdfgetx3 -lf y chi - empty_capillary-00032.chi - -Filenames that start with "e":: - - $ pdfgetx3 --list --find "^e" - empty_capillary-00032.chi - -Filenames that contain *character* "2":: - - $ pdfgetx3 --list --find 2 - Pt_bulk-00055-pdfgetx2.gr - empty_capillary-00032.chi - -Filenames that contain *numeric value* "2":: - - $ pdfgetx3 -lf "<2>" - Pt_bulk-00055-pdfgetx2.gr - -The special argument ``+`` starts a new group of patterns to -generate extra files when they cannot be all covered by -a single set of patterns. For example, to match files that -contain contain both "bulk" and "chi" substrings and then -also those that have "empty" and "chi" in their names, use:: - - $ pdfgetx3 -lf bulk chi + empty chi - Pt_bulk-00055.chi - empty_capillary-00032.chi - -When pattern groups overlap the resulting matches are -made unique and each file is listed only once :: - - $ pdfgetx3 -lf bulk chi + chi - Pt_bulk-00055.chi - empty_capillary-00032.chi - - -data search path -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -Each group of PDFgetX3 patterns can have one entry containing -forward slash "/" to specify a non-current path that is searched -for input files. The path specification affects the current and -the following pattern groups unless they provide their own path. -The chi files numbered "903" to "905" and "908" from the -:file:`series` subdirectory can be therefore matched using :: - - $ pdfgetx3 -lf series/ "<903-905>" + 908 - series/Pt_bulk_ramp03-00903.chi - series/Pt_bulk_ramp03-00904.chi - series/Pt_bulk_ramp03-00905.chi - series/Pt_bulk_ramp03-00908.chi - -The current directory can be selected using `./` :: - - $ pdfgetx3 -lf series/ 903 + ./ bulk chi - series/Pt_bulk_ramp03-00903.chi - Pt_bulk-00055.chi - -When additional pattern groups contain only the path -argument, they reuse the existing set of patterns. The -".chi"-ending files in the current and :file:`series` -directories can be thus found using :: - - $ pdfgetx3 -lf ".chi$" + series/ - Pt_bulk-00055.chi - empty_capillary-00032.chi - series/Pt_bulk_ramp03-00903.chi - series/Pt_bulk_ramp03-00904.chi - series/Pt_bulk_ramp03-00905.chi - series/Pt_bulk_ramp03-00906.chi - series/Pt_bulk_ramp03-00907.chi - series/Pt_bulk_ramp03-00908.chi - - -output file names -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -By default the output files are saved in the current directory. The -output path, can be changed with the :option:`-o, --output <-o>` option. -The :option:`!-o` recognizes several tokens that are replaced with -parts of the input file name, for example, "@b" expands to an -extension-stripped base name. In similar faction, "@o" is replaced -with the output type extension. Thus to generate PDFs for all files -in the :file:`series` directory and save them in the -:file:`series-gr` subfolder do :: - - $ pdfgetx3 --find series/ "<900-910>.chi" --output=series-gr/@b.@o - -The extension ".@o" is automatic when not included anywhere in the -output file name. Thus to process the Pt series at |Qmax| = 18 |Ainv| -while saving the results in the same folder, but with a "_qmax18" suffix -in their filenames do :: - - $ pdfgetx3 --find series/ "<900-910>.chi" --qmax=18 -o series-gr/@b_qmax18 - -For input file :file:`Pt_bulk_ramp03-00903.chi` the :option:`!-o` option -above expands to output path :file:`series-gr/Pt_bulk_ramp03-00903_qmax18.gr`. -The :file:`series-gr` directory should now contain 12 "gr" files, -6 of them processed at |Qmax| = 27 |Ainv| as given by configuration -file and 6 others processed at |Qmax| = 18 |Ainv|. - -.. seealso:: :option:`-o, --output <-o>` for a list of output tokens - -.. index:: tuneconfig (example) -.. _my-tuneconfig: - -Interactive tuning of parameters ------------------------------------------------------------------------- - -One of the most powerful features of PDFgetX3 is the ability to tune -PDF processing parameters in an interactive mode and immediately -visualize their effect on the results. To demonstrate this feature, -navigate to the :file:`Ni` directory in the shell and process -the nickel PDF while plotting the |FQ| and |Gr| curves. -Because of plotting the program will open an interactive IPython -session. The tuning mode can be then entered by calling the -:py:func:`.tuneconfig` -function from the IPython environment :: - - $ pdfgetx3 --plot=fq,gr ni300mesh_300k_nor_1-5.chi - ... - In [1]: tuneconfig() - -The -:py:func:`!tuneconfig` -function will by default add a second set of live lines -for the plotted curves and open a GUI dialog with sliders for the -tunable process parameters. Changing any slider would immediately -recalculate the PDF and update live lines in the plot. - -.. image:: images/tunenickelfqgr.png - -The *constant data scale* check-box rescales the result curves to a -constant maximum value. This is useful for assessing if a parameter -change produces different curve shape or if it just rescales the -results. The tunable parameters are described in the -:ref:`PDF parameters section `. -Only the active parameters are displayed in the tuneconfig GUI, -thus there would be no slider for the :confval:`bgscale` parameter -if PDF has been processed without any background data. - -By default the -:py:func:`!tuneconfig` -function displays the same curves as -specified by the :option:`--plot <-p>` option, however it can be -configured to show arbitrary intermediate results or even visualize -selected steps in the PDF processing. We shall demonstrate this by -showing a live-plot of the polynomial correction together with the final -PDF. At first, we shall use the :py:meth:`!describe` method of the -:py:func:`.pdfgetter` object to print out the chain of -transformations involved in the PDF processing and obtain a reference to -the transformation object *t4* that applies the polynomial correction. -The transformation object can be then included in a list of plot -identifiers that are passed to the :py:func:`!tuneconfig` function :: - - $ pdfgetx3 -i ni300mesh_300k_nor_1-5.chi - ... - Use "%pdfgetx3" for a fresh run without exiting IPython. - - In [1]: fig, ax = subplots(2) - In [2]: pdfgetter.describe() - 0 TransformTwoThetaToQA - convert x data from twotheta to Q in 1/A - 1 TransformQGridRegular - Remove the data outside the (qmin, qmaxinst) range - 2 TransformBackground - subtract background intensity - 3 TransformXrayASFnormChris - scale and normalize intensities by x-ray scattering factors - 4 TransformSQnormRPoly - Normalize S(Q) by fitting a polynomial - 5 TransformSQToFQ - Convert S(Q) to F(Q). - 6 TransformFQgrid - Resample F(Q) to a regular grid suitable for FFT - 7 TransformFQToGr - Convert F(Q) to G(r). - In [3]: t4 = pdfgetter.getTransformation(4) - In [4]: tuneconfig([t4, 'gr'], axeslist=ax) - In [5]: ax[0].legend(loc=2) - -The :py:func:`~matplotlib.pyplot.subplots` function above -is to create a new figure with 2 axes on top of each other. -Overall, the code above should display the following plot -and a GUI window: - -.. image:: images/tunenickelt4gr.png - -The tuning can be finished by clicking the ``Done`` button or closing the -tuneconfig GUI window. The parameter values can be thereafter adjusted -to a rounded values by setting an attribute of the :interactvar:`config` -object, for example:: - - In [5]: config.bgscale = 1.5 - -Finally, to save the new results, we shall first confirm -:confval:`outputtypes` have been correctly set and then use the -:py:func:`.processfiles` function to redo the calculations, plots and -data output for the updated configuration. Note that the -:py:func:`!processfiles` function accepts keyword arguments for -configuration parameters. This is used at line ``In [8]`` to -turn on the :confval:`force` flag and is in effect a shortcut -for an extra ``config.force = True`` statement. :: - - In [6]: config.outputtypes - Out[6]: ['gr'] - In [7]: processfiles() - WARNING:ni300mesh_300k_nor_1-5.gr already exists. - WARNING:Use "--force=yes" or "--force=once" to overwrite. - In [8]: processfiles(force=True) - -:file:`ni300mesh_300k_nor_1-5.gr` was successfully saved at an -updated configuration for there were no warnings after the last call. - - -Neutron PDF ------------------------------------------------------------------------- - -This example illustrates PDF extraction from -neutron powder data using :ref:`pdfgetn3 `. -Navigate to the :file:`n-Sapphire` directory in the shell. -The :file:`sapphire755.dat` file contains powder diffraction data from -sapphire (α-Al\ :sub:`2`\ O\ :sub:`3`) -measured at the constant-wavelength PEARL instrument -at the Delft University of Technology. -The :file:`pdfgetn3.cfg` configuration file specifies -processing parameters such as :confval:`wavelength`, -:confval:`twothetazero`, :confval:`composition`, and :confval:`mode`. - -To extract the sapphire neutron PDF run :: - - $ pdfgetn3 --verbose=info sapphire755.dat - - INFO:applying pdfgetn3 defaults - INFO:set config.mode = neutron - INFO:searching for default config file /home/user/.pdfgetn3.cfg - INFO:searching for default config file .pdfgetn3.cfg - INFO:searching for default config file pdfgetn3.cfg - INFO:loaded default config file pdfgetn3.cfg - INFO:reset config.twothetazero = 0.0 - INFO:parsing config file section [DEFAULT] - INFO:set config.dataformat = twotheta - INFO:set config.backgroundfile = - INFO:set config.outputtypes = fq, gr - INFO:set config.mode = neutron - INFO:set config.wavelength = 1.0989 - INFO:set config.twothetazero = -0.38 - INFO:set config.composition = Al2O3 - INFO:set config.qmaxinst = 11.2 - INFO:set config.qmax = 11.2 - INFO:set config.rmin = 0.0 - INFO:set config.rmax = 20.0 - INFO:set config.rstep = 0.01 - INFO:finished parsing config file - INFO:processing command line options - INFO:set config.verbose = info - INFO:finished with command line options - INFO:using 1 input files from the command line. - INFO:configuring PDFGetter mode 'neutron' - INFO:calling config_neutron - INFO:started PDF processing. - INFO:processing 'sapphire755.dat' - INFO:resolved output file '' as 'sapphire755.fq' - INFO:written outpufile sapphire755.fq - INFO:resolved output file '' as 'sapphire755.gr' - INFO:written outpufile sapphire755.gr - INFO:elapsed time: 0.097 - -This will produce two files :file:`sapphire755.fq`, :file:`sapphire755.gr` -for the |FQ| and |Gr| functions. -To compare them with expected results use :: - - $ plotdata sapphire755-expected.fq sapphire755.fq - $ plotdata sapphire755-expected.gr sapphire755.gr - - -Fit twothetazero ------------------------------------------------------------------------- - -For a good quality PDF it is essential to use powder patterns with -accurate values of *Q*. Some instruments may produce spectra with -a slightly offset scattering angle |twotheta| which -causes inaccurate *Q* and a noticeably worse PDF. -In this example we fit a constant-wavelength neutron PDF from nickel -together with the :confval:`twothetazero` correction parameter for -diffractometer offset. -The procedure can be used to calibrate the zero correction from -a standard sample and then use it for subsequent PDF extractions. -The protocol can be also applied to fit zero correction in -a full-fledged PDF refinement in case -the zero offset may change for different samples. - -This tutorial requires either Linux or Mac OS X platforms, -because the PDF fitting is conducted with -`diffpy.cmi `__, -which is not yet available for Windows. -If diffpy.cmi is not yet installed, -we recommend to use `Anaconda Python`_ and set up a dedicated -Anaconda environment *nbcmi* for this tutorial. -This can be accomplished using the following steps:: - - $ conda create -n nbcmi -c diffpy python=2 diffpy.cmi - $ conda activate nbcmi - $ pip install path/to/diffpy.pdfgetx-VERSION.whl - -When these prerequisites are in place, -change to the :file:`n-twothetazero-fit` directory -and open the self documented Jupyter notebook as follows :: - - $ jupyter notebook fit-twothetazero.ipynb - -.. |tthzero| replace:: :confval:`!twothetazero` - -The notebook sets up and executes several PDF refinements and -compares the results from fits on uncorrected data and with -a fitted |tthzero|. -After running all cells the notebook should produce similar graphs -as in the figure below. - -.. figure:: images/twothetazerofit.* - - Refinement of nickel neutron PDF for **(a)** uncorrected data - and **(b)** with a refined zero correction. - The extracted PDFs are plotted as blue circles, - simulated PDFs as red lines and - the difference is plotted offset in green below. - -The final refined zero offset in the notebook should be approximately -0.36°. -The correction produces experimental PDF with a remarkably better fit -residual R\ :sub:`w` which is lowered from (a) 0.18 to (b) 0.05. - - -Small-angle-scattering PDF (sasPDF) ------------------------------------------------------------------------- - -Here we illustrate how to extract a PDF from small-angle-scattering (sas) data using :ref:`pdfgets3 `. -To do this, navigate to the :file:`Au_DNA_NPA` directory in your terminal. -In this folder, you will find :file:`Au_DNA_NPA.chi` and -:file:`Au_DNA_FF.chi` files which correspond to diffraction data from -DNA-capped Au nanoparticle assemblies and from a DNA-capped Au -nanoparticle colloidal solution respectively. Those two files were -measured at X21 beamline, NSLS and published in `D. Nykypanchuk, M. M. -Maye, D. van der Lelie, and O. Gang, Nature 451, 549 (2008). -`_. We thank Prof. Oleg Gang (Columbia University) for sharing this data. The :file:`pdfgets3.cfg` -configuration file specifies processing parameters such as :confval:`formfactorfile` (required by ``sas`` mode), :confval:`qmin`, :confval:`qmax`, and :confval:`mode`. - -To extract the PDF of DNA-capped DNA nanoparticle assemblies :: - - $ pdfgets3 --verbose=info Au_DNA_NPA.chi - - INFO:applying pdfgets3 defaults - INFO:set config.mode = sas - INFO:searching for default config file /home/user/.pdfgets3.cfg - INFO:searching for default config file .pdfgets3.cfg - INFO:searching for default config file pdfgets3.cfg - INFO:loaded default config file pdfgets3.cfg - INFO:reset config.twothetazero = 0.0 - INFO:parsing config file section [DEFAULT] - INFO:set config.dataformat = QA - INFO:set config.backgroundfile = - INFO:set config.datapath = [] - INFO:set config.formfactorfile = Au_DNA_FF.chi - INFO:set config.output = - INFO:set config.outputtypes = fq, gr - INFO:set config.force = yes - INFO:set config.mode = sas - INFO:set config.rpoly = 240.605 - INFO:set config.qmaxinst = 0.075 - INFO:set config.qmin = 0.01 - INFO:set config.qmax = 0.072 - INFO:set config.rmin = 100.0 - INFO:set config.rmax = 5000.0 - INFO:set config.rstep = 1.0 - INFO:set config.plot = iq, fq, gr - INFO:set config.verbose = info - INFO:finished parsing config file - INFO:processing command line options - INFO:set config.verbose = info - INFO:finished with command line options - INFO:using 1 input files from the command line. - INFO:configuring PDFGetter mode 'sas' - INFO:calling config_sas - INFO:started PDF processing. - INFO:processing 'Au_DNA_NPA.chi' - INFO:resolved output file '' as 'Au_DNA_NPA.fq' - INFO:written outpufile Au_DNA_NPA.fq - INFO:resolved output file '' as 'Au_DNA_NPA.gr' - INFO:written outpufile Au_DNA_NPA.gr - INFO:elapsed time: 0.947 - - -This will save two files :file:`Au_DNA_NPA.fq`, :file:`Au_DNA_NPA.gr` in the same directoy for the |FQ| and |Gr| functions. This also plots |FQ| and |Gr| functions in a pop-up window and the processing parameters such as :confval:`rpoly` or so may be tuned interactively by issuing command :py:func:`!tuneconfig` in the `IPython`_ session as discussed above. - - -Multiple Background Subtraction ------------------------------------------------------------------------- - -Predefined configuration file -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - - -In this tutorial, we will show how to use the multiple-background subtraction -functionality by obtainining equivalent outputs from different, but equivalent, -subtractions. Change directory to the :file:`doc/examples/ -Multiple_Background_Subtraction` directory. The file named -:file:`ni300mesh_300k_nor_1-5.chi` contains powder X-ray data measured from -nickel at the Advanced Photon Source beamline 6ID-D. The file contains two -columns for the |twotheta| scattering angles and X-ray intensities. Similarly, -:file:`kapton_bgrd_300k_nor_2-3.chi` contains the background data (i.e., the -intensities from an empty kapton capillary), and a duplicate file -:file:`kapton_bgrd_300k_nor_2-3_copy.chi` contains the same dataset (this -duplication of the data is necessary when using the same background multiple -times as the internal system only stores a set of unique background filenames). -The last :file:`.chi` file, :file:`TEST_blank-00000.chi`, simply stores a null -dataset and can be used to show the invariance of the PDF under permutation of -the order of background subtractions as well as the fact that more than just -two backgrounds can be subtracted. There are also two config files -:file:`nickel.cfg` and :file:`nickel_sub_two_half_backgrounds.cfg`, each of -which contain a set of complete configuration parameters for converting the Ni -powder pattern to a PDF for the case of doing so via a single background -subtraction and a multiple background subtraction, respectively. Finally, there -is a fully processed G(r) file :file:`ni300mesh_300k_nor_1-5-expected.gr` which -contains the expected output of producing the PDF of the Ni sample after -subtracting the kapton background. Since all processing parameters are already -defined in these configuration files, producing the PDF using multiple -background subtractions is very simple and involves running the :ref:`pdfgetx3 -` program and specifying the multiple background subtraction -config file and the powder data file as arguments:: - - $ pdfgetx3 -c nickel_sub_two_half_backgrounds.cfg ni300mesh_300k_nor_1-5.chi - -The resulting G(r) file, :file:`ni300mesh_300k_nor_1-5.gr`, is the result of -producing the PDF according to:: - - "ni300mesh_300k_nor_1-5.chi" - 0.5*"kapton_bgrd_300k_nor_2-3.chi" - - 0.5*"kapton_bgrd_300k_nor_2-3.chi" - -Which should be equivalent to the case where the following single background -subtraction had been performed:: - - "ni300mesh_300k_nor_1-5.chi" - 1.0*"kapton_bgrd_300k_nor_2-3.chi" - -The fact that both of these result in the same PDF can be verified by comparing -the produced G(r) with the expected G(r) provided in the example:: - - $ plotdata ni300mesh_300k_nor_1-5-expected.gr ni300mesh_300k_nor_1-5.gr - - -Interactive Multiple Background Subtraction -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -The multiple background subtraction functionality can also be carried out -interactively, as per the :ref:`my-tuneconfig` section, using the plural forms -of the relevant variables (i.e., `config.bgscales`, `config.backgroundfiles`, -etc.). diff --git a/static_root/doc/pdfgetx/2.2.1/_static/basic.css b/static_root/doc/pdfgetx/2.2.1/_static/basic.css deleted file mode 100644 index bf18350b..00000000 --- a/static_root/doc/pdfgetx/2.2.1/_static/basic.css +++ /dev/null @@ -1,906 +0,0 @@ -/* - * basic.css - * ~~~~~~~~~ - * - * Sphinx stylesheet -- basic theme. - * - * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS. - * :license: BSD, see LICENSE for details. - * - */ - -/* -- main layout ----------------------------------------------------------- */ - -div.clearer { - clear: both; 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- color: #444444; - font-size: 1.4em; - font-weight: normal; - margin: 0; - padding: 0; -} - -div.sphinxsidebar h3 a { - color: #444444; -} - -div.sphinxsidebar h4 { - font-family: 'Myriad Pro', 'Trebuchet Ms', 'Segoe UI', sans-serif; - color: #444444; - font-size: 1.3em; - font-weight: normal; - margin: 5px 0 0 0; - padding: 0; -} - -div.sphinxsidebar p { - color: #444444; -} - -div.sphinxsidebar p.topless { - margin: 5px 10px 10px 10px; -} - -div.sphinxsidebar ul { - margin: 10px; - padding: 0; - color: #444444; -} - -div.sphinxsidebar a { - color: #444444; -} - -div.sphinxsidebar input { - border: 1px solid #444444; - font-family: sans-serif; - font-size: 1em; -} - - -/* for collapsible sidebar */ -div#sidebarbutton { - background-color: #3c6e83; -} - - -/* -- hyperlink styles ------------------------------------------------------ */ - -a { - color: #00608f; - text-decoration: none; -} - -a:visited { - color: #30306f; - text-decoration: none; -} - -a:hover { - text-decoration: underline; -} - - - -/* -- body styles ----------------------------------------------------------- */ - -div.body h1, -div.body h2, -div.body h3, -div.body h4, -div.body h5, -div.body h6 { - font-family: 'Myriad Pro', 'Trebuchet Ms', 'Segoe UI', sans-serif; - background-color: white; - font-weight: normal; - color: #1a1a1a; - border-bottom: 1px solid #ccc; - margin: 20px -20px 10px -20px; - padding: 3px 0 3px 10px; -} - -div.body h1 { margin-top: 0; font-size: 200%; } -div.body h2 { font-size: 160%; } -div.body h3 { font-size: 140%; } -div.body h4 { font-size: 120%; } -div.body h5 { font-size: 110%; } -div.body h6 { font-size: 100%; } - -a.headerlink { - color: #aaaaaa; - font-size: 0.8em; - padding: 0 4px 0 4px; - text-decoration: none; -} - -a.headerlink:hover { - background-color: #aaaaaa; - color: white; -} - -div.body p, div.body dd, div.body li, div.body blockquote { - text-align: justify; - line-height: 130%; -} - -div.admonition p.admonition-title + p { - display: inline; -} - -div.admonition p { - margin-bottom: 5px; -} - -div.admonition pre { - margin-bottom: 5px; -} - -div.admonition ul, div.admonition ol { - margin-bottom: 5px; -} - -div.note { - background-color: #eee; - border: 1px solid #ccc; -} - -div.seealso { - background-color: #ffc; - border: 1px solid #ff6; -} - -div.topic { - background-color: #eee; -} - -div.warning { - background-color: #ffe4e4; - border: 1px solid #f66; -} - -p.admonition-title { - display: inline; -} - -p.admonition-title:after { - content: ":"; -} - -pre { - padding: 5px; - background-color: unset; - color: unset; - line-height: 120%; - border: 1px solid #ac9; - border-left: none; - border-right: none; -} - -code { - background-color: #ecf0f3; - padding: 0 1px 0 1px; - font-size: 0.95em; -} - -th, dl.field-list > dt { - background-color: #ede; -} - -.warning code { - background: #efc2c2; -} - -.note code { - background: #d6d6d6; -} - -.viewcode-back { - font-family: 'Palatino', 'Palatino Linotype', 'URW Palladio L', 'Century Schoolbook L', 'Georgia', serif; -} - -div.viewcode-block:target { - background-color: #f4debf; - border-top: 1px solid #ac9; - border-bottom: 1px solid #ac9; -} - -div.code-block-caption { - color: #efefef; - background-color: #1c4e63; -} \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.2.1/_static/copybutton.js b/static_root/doc/pdfgetx/2.2.1/_static/copybutton.js deleted file mode 100644 index ca9f489f..00000000 --- a/static_root/doc/pdfgetx/2.2.1/_static/copybutton.js +++ /dev/null @@ -1,57 +0,0 @@ -$(document).ready(function() { - /* Add a [>>>] button on the top-right corner of code samples to hide - * the >>> and ... prompts and the output and thus make the code - * copyable. */ - var div = $('.highlight-python .highlight,' + - '.highlight-pycon .highlight,' + - '.highlight-python3 .highlight') - var pre = div.find('pre'); - - // get the styles from the current theme - pre.parent().parent().css('position', 'relative'); - var hide_text = 'Hide the prompts and output'; - var show_text = 'Show the prompts and output'; - var border_width = pre.css('border-top-width'); - var border_style = pre.css('border-top-style'); - var border_color = pre.css('border-top-color'); - var button_styles = { - 'cursor':'pointer', 'position': 'absolute', 'top': '0', 'right': '0', - 'border-color': border_color, 'border-style': border_style, - 'border-width': border_width, 'color': border_color, 'text-size': '75%', - 'font-family': 'monospace', 'padding-left': '0.2em', 'padding-right': '0.2em', - 'border-radius': '0 3px 0 0' - } - - // create and add the button to all the code blocks that contain >>> - div.each(function(index) { - var jthis = $(this); - if (jthis.find('.gp').length > 0) { - var button = $('>>>'); - button.css(button_styles) - button.attr('title', hide_text); - jthis.prepend(button); - } - // tracebacks (.gt) contain bare text elements that need to be - // wrapped in a span to work with .nextUntil() (see later) - jthis.find('pre:has(.gt)').contents().filter(function() { - return ((this.nodeType == 3) && (this.data.trim().length > 0)); - }).wrap(''); - }); - - // define the behavior of the button when it's clicked - $('.copybutton').toggle( - function() { - var button = $(this); - button.parent().find('.go, .gp, .gt').hide(); - button.next('pre').find('.gt').nextUntil('.gp, .go').css('visibility', 'hidden'); - button.css('text-decoration', 'line-through'); - button.attr('title', show_text); - }, - function() { - var button = $(this); - button.parent().find('.go, .gp, .gt').show(); - button.next('pre').find('.gt').nextUntil('.gp, .go').css('visibility', 'visible'); - button.css('text-decoration', 'none'); - button.attr('title', hide_text); - }); -}); diff --git a/static_root/doc/pdfgetx/2.2.1/_static/doctools.js b/static_root/doc/pdfgetx/2.2.1/_static/doctools.js deleted file mode 100644 index e509e483..00000000 --- a/static_root/doc/pdfgetx/2.2.1/_static/doctools.js +++ /dev/null @@ -1,326 +0,0 @@ -/* - * doctools.js - * ~~~~~~~~~~~ - * - * Sphinx JavaScript utilities for all documentation. - * - * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS. - * :license: BSD, see LICENSE for details. - * - */ - -/** - * select a different prefix for underscore - */ -$u = _.noConflict(); - -/** - * make the code below compatible with browsers without - * an installed firebug like debugger -if (!window.console || !console.firebug) { - var names = ["log", "debug", "info", "warn", "error", "assert", "dir", - "dirxml", "group", "groupEnd", "time", "timeEnd", "count", "trace", - "profile", "profileEnd"]; - window.console = {}; - for (var i = 0; i < names.length; ++i) - window.console[names[i]] = function() {}; -} - */ - -/** - * small helper function to urldecode strings - * - * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/decodeURIComponent#Decoding_query_parameters_from_a_URL - */ -jQuery.urldecode = function(x) { - if (!x) { - return x - } - return decodeURIComponent(x.replace(/\+/g, ' ')); -}; - -/** - * small helper function to urlencode strings - */ -jQuery.urlencode = encodeURIComponent; - -/** - * This function returns the parsed url parameters of the - * current request. Multiple values per key are supported, - * it will always return arrays of strings for the value parts. - */ -jQuery.getQueryParameters = function(s) { - if (typeof s === 'undefined') - s = document.location.search; - var parts = s.substr(s.indexOf('?') + 1).split('&'); - var result = {}; - for (var i = 0; i < parts.length; i++) { - var tmp = parts[i].split('=', 2); - var key = jQuery.urldecode(tmp[0]); - var value = jQuery.urldecode(tmp[1]); - if (key in result) - result[key].push(value); - else - result[key] = [value]; - } - return result; -}; - -/** - * highlight a given string on a jquery object by wrapping it in - * span elements with the given class name. - */ -jQuery.fn.highlightText = function(text, className) { - function highlight(node, addItems) { - if (node.nodeType === 3) { - var val = node.nodeValue; - var pos = val.toLowerCase().indexOf(text); - if (pos >= 0 && - !jQuery(node.parentNode).hasClass(className) && - !jQuery(node.parentNode).hasClass("nohighlight")) { - var span; - var isInSVG = jQuery(node).closest("body, svg, foreignObject").is("svg"); - if (isInSVG) { - span = document.createElementNS("http://www.w3.org/2000/svg", "tspan"); - } else { - span = document.createElement("span"); - span.className = className; - } - span.appendChild(document.createTextNode(val.substr(pos, text.length))); - node.parentNode.insertBefore(span, node.parentNode.insertBefore( - document.createTextNode(val.substr(pos + text.length)), - node.nextSibling)); - node.nodeValue = val.substr(0, pos); - if (isInSVG) { - var rect = document.createElementNS("http://www.w3.org/2000/svg", "rect"); - var bbox = node.parentElement.getBBox(); - rect.x.baseVal.value = bbox.x; - rect.y.baseVal.value = bbox.y; - rect.width.baseVal.value = bbox.width; - rect.height.baseVal.value = bbox.height; - rect.setAttribute('class', className); - addItems.push({ - "parent": node.parentNode, - "target": rect}); - } - } - } - else if (!jQuery(node).is("button, select, textarea")) { - jQuery.each(node.childNodes, function() { - highlight(this, addItems); - }); - } - } - var addItems = []; - var result = this.each(function() { - highlight(this, addItems); - }); - for (var i = 0; i < addItems.length; ++i) { - jQuery(addItems[i].parent).before(addItems[i].target); - } - return result; -}; - -/* - * backward compatibility for jQuery.browser - * This will be supported until firefox bug is fixed. - */ -if (!jQuery.browser) { - jQuery.uaMatch = function(ua) { - ua = ua.toLowerCase(); - - var match = /(chrome)[ \/]([\w.]+)/.exec(ua) || - /(webkit)[ \/]([\w.]+)/.exec(ua) || - /(opera)(?:.*version|)[ \/]([\w.]+)/.exec(ua) || - /(msie) ([\w.]+)/.exec(ua) || - ua.indexOf("compatible") < 0 && /(mozilla)(?:.*? rv:([\w.]+)|)/.exec(ua) || - []; - - return { - browser: match[ 1 ] || "", - version: match[ 2 ] || "0" - }; - }; - jQuery.browser = {}; - jQuery.browser[jQuery.uaMatch(navigator.userAgent).browser] = true; -} - -/** - * Small JavaScript module for the documentation. - */ -var Documentation = { - - init : function() { - this.fixFirefoxAnchorBug(); - this.highlightSearchWords(); - this.initIndexTable(); - if (DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS) { - this.initOnKeyListeners(); - } - }, - - /** - * i18n support - */ - TRANSLATIONS : {}, - PLURAL_EXPR : function(n) { return n === 1 ? 0 : 1; }, - LOCALE : 'unknown', - - // gettext and ngettext don't access this so that the functions - // can safely bound to a different name (_ = Documentation.gettext) - gettext : function(string) { - var translated = Documentation.TRANSLATIONS[string]; - if (typeof translated === 'undefined') - return string; - return (typeof translated === 'string') ? translated : translated[0]; - }, - - ngettext : function(singular, plural, n) { - var translated = Documentation.TRANSLATIONS[singular]; - if (typeof translated === 'undefined') - return (n == 1) ? singular : plural; - return translated[Documentation.PLURALEXPR(n)]; - }, - - addTranslations : function(catalog) { - for (var key in catalog.messages) - this.TRANSLATIONS[key] = catalog.messages[key]; - this.PLURAL_EXPR = new Function('n', 'return +(' + catalog.plural_expr + ')'); - this.LOCALE = catalog.locale; - }, - - /** - * add context elements like header anchor links - */ - addContextElements : function() { - $('div[id] > :header:first').each(function() { - $('\u00B6'). - attr('href', '#' + this.id). - attr('title', _('Permalink to this headline')). - appendTo(this); - }); - $('dt[id]').each(function() { - $('\u00B6'). - attr('href', '#' + this.id). - attr('title', _('Permalink to this definition')). - appendTo(this); - }); - }, - - /** - * workaround a firefox stupidity - * see: https://bugzilla.mozilla.org/show_bug.cgi?id=645075 - */ - fixFirefoxAnchorBug : function() { - if (document.location.hash && $.browser.mozilla) - window.setTimeout(function() { - document.location.href += ''; - }, 10); - }, - - /** - * highlight the search words provided in the url in the text - */ - highlightSearchWords : function() { - var params = $.getQueryParameters(); - var terms = (params.highlight) ? params.highlight[0].split(/\s+/) : []; - if (terms.length) { - var body = $('div.body'); - if (!body.length) { - body = $('body'); - } - window.setTimeout(function() { - $.each(terms, function() { - body.highlightText(this.toLowerCase(), 'highlighted'); - }); - }, 10); - $('

    ' + _('Hide Search Matches') + '

    ') - .appendTo($('#searchbox')); - } - }, - - /** - * init the domain index toggle buttons - */ - initIndexTable : function() { - var togglers = $('img.toggler').click(function() { - var src = $(this).attr('src'); - var idnum = $(this).attr('id').substr(7); - $('tr.cg-' + idnum).toggle(); - if (src.substr(-9) === 'minus.png') - $(this).attr('src', src.substr(0, src.length-9) + 'plus.png'); - else - $(this).attr('src', src.substr(0, src.length-8) + 'minus.png'); - }).css('display', ''); - if (DOCUMENTATION_OPTIONS.COLLAPSE_INDEX) { - togglers.click(); - } - }, - - /** - * helper function to hide the search marks again - */ - hideSearchWords : function() { - $('#searchbox .highlight-link').fadeOut(300); - $('span.highlighted').removeClass('highlighted'); - var url = new URL(window.location); - url.searchParams.delete('highlight'); - window.history.replaceState({}, '', url); - }, - - /** - * make the url absolute - */ - makeURL : function(relativeURL) { - return DOCUMENTATION_OPTIONS.URL_ROOT + '/' + relativeURL; - }, - - /** - * get the current relative url - */ - getCurrentURL : function() { - var path = document.location.pathname; - var parts = path.split(/\//); - $.each(DOCUMENTATION_OPTIONS.URL_ROOT.split(/\//), function() { - if (this === '..') - parts.pop(); - }); - var url = parts.join('/'); - return path.substring(url.lastIndexOf('/') + 1, path.length - 1); - }, - - initOnKeyListeners: function() { - $(document).keydown(function(event) { - var activeElementType = document.activeElement.tagName; - // don't navigate when in search box, textarea, dropdown or button - if (activeElementType !== 'TEXTAREA' && activeElementType !== 'INPUT' && activeElementType !== 'SELECT' - && activeElementType !== 'BUTTON' && !event.altKey && !event.ctrlKey && !event.metaKey - && !event.shiftKey) { - switch (event.keyCode) { - case 37: // left - var prevHref = $('link[rel="prev"]').prop('href'); - if (prevHref) { - window.location.href = prevHref; - return false; - } - break; - case 39: // right - var nextHref = $('link[rel="next"]').prop('href'); - if (nextHref) { - window.location.href = nextHref; - return false; - } - break; - } - } - }); - } -}; - -// quick alias for translations -_ = Documentation.gettext; - -$(document).ready(function() { - Documentation.init(); -}); diff --git a/static_root/doc/pdfgetx/2.2.1/_static/documentation_options.js b/static_root/doc/pdfgetx/2.2.1/_static/documentation_options.js deleted file mode 100644 index dbd10312..00000000 --- a/static_root/doc/pdfgetx/2.2.1/_static/documentation_options.js +++ /dev/null @@ -1,12 +0,0 @@ -var DOCUMENTATION_OPTIONS = { - URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'), - VERSION: '2.2.1', - LANGUAGE: 'None', - COLLAPSE_INDEX: false, - BUILDER: 'html', - FILE_SUFFIX: '.html', - LINK_SUFFIX: '.html', - HAS_SOURCE: true, - SOURCELINK_SUFFIX: '.txt', - NAVIGATION_WITH_KEYS: true -}; \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.2.1/_static/favicon.png b/static_root/doc/pdfgetx/2.2.1/_static/favicon.png deleted file mode 100644 index 93e4a02c..00000000 Binary files a/static_root/doc/pdfgetx/2.2.1/_static/favicon.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.2.1/_static/file.png b/static_root/doc/pdfgetx/2.2.1/_static/file.png deleted file mode 100644 index a858a410..00000000 Binary files a/static_root/doc/pdfgetx/2.2.1/_static/file.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.2.1/_static/jquery-3.5.1.js b/static_root/doc/pdfgetx/2.2.1/_static/jquery-3.5.1.js deleted file mode 100644 index 50937333..00000000 --- a/static_root/doc/pdfgetx/2.2.1/_static/jquery-3.5.1.js +++ /dev/null @@ -1,10872 +0,0 @@ -/*! - * jQuery JavaScript Library v3.5.1 - * https://jquery.com/ - * - * Includes Sizzle.js - * https://sizzlejs.com/ - * - * Copyright JS Foundation and other contributors - * Released under the MIT license - * https://jquery.org/license - * - * Date: 2020-05-04T22:49Z - */ -( function( global, factory ) { - - "use strict"; - - if ( typeof module === "object" && typeof module.exports === "object" ) { - - // For CommonJS and CommonJS-like environments where a proper `window` - // is present, execute the factory and get jQuery. - // For environments that do not have a `window` with a `document` - // (such as Node.js), expose a factory as module.exports. - // This accentuates the need for the creation of a real `window`. - // e.g. var jQuery = require("jquery")(window); - // See ticket #14549 for more info. - module.exports = global.document ? - factory( global, true ) : - function( w ) { - if ( !w.document ) { - throw new Error( "jQuery requires a window with a document" ); - } - return factory( w ); - }; - } else { - factory( global ); - } - -// Pass this if window is not defined yet -} )( typeof window !== "undefined" ? window : this, function( window, noGlobal ) { - -// Edge <= 12 - 13+, Firefox <=18 - 45+, IE 10 - 11, Safari 5.1 - 9+, iOS 6 - 9.1 -// throw exceptions when non-strict code (e.g., ASP.NET 4.5) accesses strict mode -// arguments.callee.caller (trac-13335). But as of jQuery 3.0 (2016), strict mode should be common -// enough that all such attempts are guarded in a try block. -"use strict"; - -var arr = []; - -var getProto = Object.getPrototypeOf; - -var slice = arr.slice; - -var flat = arr.flat ? function( array ) { - return arr.flat.call( array ); -} : function( array ) { - return arr.concat.apply( [], array ); -}; - - -var push = arr.push; - -var indexOf = arr.indexOf; - -var class2type = {}; - -var toString = class2type.toString; - -var hasOwn = class2type.hasOwnProperty; - -var fnToString = hasOwn.toString; - -var ObjectFunctionString = fnToString.call( Object ); - -var support = {}; - -var isFunction = function isFunction( obj ) { - - // Support: Chrome <=57, Firefox <=52 - // In some browsers, typeof returns "function" for HTML elements - // (i.e., `typeof document.createElement( "object" ) === "function"`). - // We don't want to classify *any* DOM node as a function. - return typeof obj === "function" && typeof obj.nodeType !== "number"; - }; - - -var isWindow = function isWindow( obj ) { - return obj != null && obj === obj.window; - }; - - -var document = window.document; - - - - var preservedScriptAttributes = { - type: true, - src: true, - nonce: true, - noModule: true - }; - - function DOMEval( code, node, doc ) { - doc = doc || document; - - var i, val, - script = doc.createElement( "script" ); - - script.text = code; - if ( node ) { - for ( i in preservedScriptAttributes ) { - - // Support: Firefox 64+, Edge 18+ - // Some browsers don't support the "nonce" property on scripts. - // On the other hand, just using `getAttribute` is not enough as - // the `nonce` attribute is reset to an empty string whenever it - // becomes browsing-context connected. - // See https://github.com/whatwg/html/issues/2369 - // See https://html.spec.whatwg.org/#nonce-attributes - // The `node.getAttribute` check was added for the sake of - // `jQuery.globalEval` so that it can fake a nonce-containing node - // via an object. - val = node[ i ] || node.getAttribute && node.getAttribute( i ); - if ( val ) { - script.setAttribute( i, val ); - } - } - } - doc.head.appendChild( script ).parentNode.removeChild( script ); - } - - -function toType( obj ) { - if ( obj == null ) { - return obj + ""; - } - - // Support: Android <=2.3 only (functionish RegExp) - return typeof obj === "object" || typeof obj === "function" ? - class2type[ toString.call( obj ) ] || "object" : - typeof obj; -} -/* global Symbol */ -// Defining this global in .eslintrc.json would create a danger of using the global -// unguarded in another place, it seems safer to define global only for this module - - - -var - version = "3.5.1", - - // Define a local copy of jQuery - jQuery = function( selector, context ) { - - // The jQuery object is actually just the init constructor 'enhanced' - // Need init if jQuery is called (just allow error to be thrown if not included) - return new jQuery.fn.init( selector, context ); - }; - -jQuery.fn = jQuery.prototype = { - - // The current version of jQuery being used - jquery: version, - - constructor: jQuery, - - // The default length of a jQuery object is 0 - length: 0, - - toArray: function() { - return slice.call( this ); - }, - - // Get the Nth element in the matched element set OR - // Get the whole matched element set as a clean array - get: function( num ) { - - // Return all the elements in a clean array - if ( num == null ) { - return slice.call( this ); - } - - // Return just the one element from the set - return num < 0 ? this[ num + this.length ] : this[ num ]; - }, - - // Take an array of elements and push it onto the stack - // (returning the new matched element set) - pushStack: function( elems ) { - - // Build a new jQuery matched element set - var ret = jQuery.merge( this.constructor(), elems ); - - // Add the old object onto the stack (as a reference) - ret.prevObject = this; - - // Return the newly-formed element set - return ret; - }, - - // Execute a callback for every element in the matched set. - each: function( callback ) { - return jQuery.each( this, callback ); - }, - - map: function( callback ) { - return this.pushStack( jQuery.map( this, function( elem, i ) { - return callback.call( elem, i, elem ); - } ) ); - }, - - slice: function() { - return this.pushStack( slice.apply( this, arguments ) ); - }, - - first: function() { - return this.eq( 0 ); - }, - - last: function() { - return this.eq( -1 ); - }, - - even: function() { - return this.pushStack( jQuery.grep( this, function( _elem, i ) { - return ( i + 1 ) % 2; - } ) ); - }, - - odd: function() { - return this.pushStack( jQuery.grep( this, function( _elem, i ) { - return i % 2; - } ) ); - }, - - eq: function( i ) { - var len = this.length, - j = +i + ( i < 0 ? len : 0 ); - return this.pushStack( j >= 0 && j < len ? [ this[ j ] ] : [] ); - }, - - end: function() { - return this.prevObject || this.constructor(); - }, - - // For internal use only. - // Behaves like an Array's method, not like a jQuery method. - push: push, - sort: arr.sort, - splice: arr.splice -}; - -jQuery.extend = jQuery.fn.extend = function() { - var options, name, src, copy, copyIsArray, clone, - target = arguments[ 0 ] || {}, - i = 1, - length = arguments.length, - deep = false; - - // Handle a deep copy situation - if ( typeof target === "boolean" ) { - deep = target; - - // Skip the boolean and the target - target = arguments[ i ] || {}; - i++; - } - - // Handle case when target is a string or something (possible in deep copy) - if ( typeof target !== "object" && !isFunction( target ) ) { - target = {}; - } - - // Extend jQuery itself if only one argument is passed - if ( i === length ) { - target = this; - i--; - } - - for ( ; i < length; i++ ) { - - // Only deal with non-null/undefined values - if ( ( options = arguments[ i ] ) != null ) { - - // Extend the base object - for ( name in options ) { - copy = options[ name ]; - - // Prevent Object.prototype pollution - // Prevent never-ending loop - if ( name === "__proto__" || target === copy ) { - continue; - } - - // Recurse if we're merging plain objects or arrays - if ( deep && copy && ( jQuery.isPlainObject( copy ) || - ( copyIsArray = Array.isArray( copy ) ) ) ) { - src = target[ name ]; - - // Ensure proper type for the source value - if ( copyIsArray && !Array.isArray( src ) ) { - clone = []; - } else if ( !copyIsArray && !jQuery.isPlainObject( src ) ) { - clone = {}; - } else { - clone = src; - } - copyIsArray = false; - - // Never move original objects, clone them - target[ name ] = jQuery.extend( deep, clone, copy ); - - // Don't bring in undefined values - } else if ( copy !== undefined ) { - target[ name ] = copy; - } - } - } - } - - // Return the modified object - return target; -}; - -jQuery.extend( { - - // Unique for each copy of jQuery on the page - expando: "jQuery" + ( version + Math.random() ).replace( /\D/g, "" ), - - // Assume jQuery is ready without the ready module - isReady: true, - - error: function( msg ) { - throw new Error( msg ); - }, - - noop: function() {}, - - isPlainObject: function( obj ) { - var proto, Ctor; - - // Detect obvious negatives - // Use toString instead of jQuery.type to catch host objects - if ( !obj || toString.call( obj ) !== "[object Object]" ) { - return false; - } - - proto = getProto( obj ); - - // Objects with no prototype (e.g., `Object.create( null )`) are plain - if ( !proto ) { - return true; - } - - // Objects with prototype are plain iff they were constructed by a global Object function - Ctor = hasOwn.call( proto, "constructor" ) && proto.constructor; - return typeof Ctor === "function" && fnToString.call( Ctor ) === ObjectFunctionString; - }, - - isEmptyObject: function( obj ) { - var name; - - for ( name in obj ) { - return false; - } - return true; - }, - - // Evaluates a script in a provided context; falls back to the global one - // if not specified. - globalEval: function( code, options, doc ) { - DOMEval( code, { nonce: options && options.nonce }, doc ); - }, - - each: function( obj, callback ) { - var length, i = 0; - - if ( isArrayLike( obj ) ) { - length = obj.length; - for ( ; i < length; i++ ) { - if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) { - break; - } - } - } else { - for ( i in obj ) { - if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) { - break; - } - } - } - - return obj; - }, - - // results is for internal usage only - makeArray: function( arr, results ) { - var ret = results || []; - - if ( arr != null ) { - if ( isArrayLike( Object( arr ) ) ) { - jQuery.merge( ret, - typeof arr === "string" ? - [ arr ] : arr - ); - } else { - push.call( ret, arr ); - } - } - - return ret; - }, - - inArray: function( elem, arr, i ) { - return arr == null ? -1 : indexOf.call( arr, elem, i ); - }, - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - merge: function( first, second ) { - var len = +second.length, - j = 0, - i = first.length; - - for ( ; j < len; j++ ) { - first[ i++ ] = second[ j ]; - } - - first.length = i; - - return first; - }, - - grep: function( elems, callback, invert ) { - var callbackInverse, - matches = [], - i = 0, - length = elems.length, - callbackExpect = !invert; - - // Go through the array, only saving the items - // that pass the validator function - for ( ; i < length; i++ ) { - callbackInverse = !callback( elems[ i ], i ); - if ( callbackInverse !== callbackExpect ) { - matches.push( elems[ i ] ); - } - } - - return matches; - }, - - // arg is for internal usage only - map: function( elems, callback, arg ) { - var length, value, - i = 0, - ret = []; - - // Go through the array, translating each of the items to their new values - if ( isArrayLike( elems ) ) { - length = elems.length; - for ( ; i < length; i++ ) { - value = callback( elems[ i ], i, arg ); - - if ( value != null ) { - ret.push( value ); - } - } - - // Go through every key on the object, - } else { - for ( i in elems ) { - value = callback( elems[ i ], i, arg ); - - if ( value != null ) { - ret.push( value ); - } - } - } - - // Flatten any nested arrays - return flat( ret ); - }, - - // A global GUID counter for objects - guid: 1, - - // jQuery.support is not used in Core but other projects attach their - // properties to it so it needs to exist. - support: support -} ); - -if ( typeof Symbol === "function" ) { - jQuery.fn[ Symbol.iterator ] = arr[ Symbol.iterator ]; -} - -// Populate the class2type map -jQuery.each( "Boolean Number String Function Array Date RegExp Object Error Symbol".split( " " ), -function( _i, name ) { - class2type[ "[object " + name + "]" ] = name.toLowerCase(); -} ); - -function isArrayLike( obj ) { - - // Support: real iOS 8.2 only (not reproducible in simulator) - // `in` check used to prevent JIT error (gh-2145) - // hasOwn isn't used here due to false negatives - // regarding Nodelist length in IE - var length = !!obj && "length" in obj && obj.length, - type = toType( obj ); - - if ( isFunction( obj ) || isWindow( obj ) ) { - return false; - } - - return type === "array" || length === 0 || - typeof length === "number" && length > 0 && ( length - 1 ) in obj; -} -var Sizzle = -/*! - * Sizzle CSS Selector Engine v2.3.5 - * https://sizzlejs.com/ - * - * Copyright JS Foundation and other contributors - * Released under the MIT license - * https://js.foundation/ - * - * Date: 2020-03-14 - */ -( function( window ) { -var i, - support, - Expr, - getText, - isXML, - tokenize, - compile, - select, - outermostContext, - sortInput, - hasDuplicate, - - // Local document vars - setDocument, - document, - docElem, - documentIsHTML, - rbuggyQSA, - rbuggyMatches, - matches, - contains, - - // Instance-specific data - expando = "sizzle" + 1 * new Date(), - preferredDoc = window.document, - dirruns = 0, - done = 0, - classCache = createCache(), - tokenCache = createCache(), - compilerCache = createCache(), - nonnativeSelectorCache = createCache(), - sortOrder = function( a, b ) { - if ( a === b ) { - hasDuplicate = true; - } - return 0; - }, - - // Instance methods - hasOwn = ( {} ).hasOwnProperty, - arr = [], - pop = arr.pop, - pushNative = arr.push, - push = arr.push, - slice = arr.slice, - - // Use a stripped-down indexOf as it's faster than native - // https://jsperf.com/thor-indexof-vs-for/5 - indexOf = function( list, elem ) { - var i = 0, - len = list.length; - for ( ; i < len; i++ ) { - if ( list[ i ] === elem ) { - return i; - } - } - return -1; - }, - - booleans = "checked|selected|async|autofocus|autoplay|controls|defer|disabled|hidden|" + - "ismap|loop|multiple|open|readonly|required|scoped", - - // Regular expressions - - // http://www.w3.org/TR/css3-selectors/#whitespace - whitespace = "[\\x20\\t\\r\\n\\f]", - - // https://www.w3.org/TR/css-syntax-3/#ident-token-diagram - identifier = "(?:\\\\[\\da-fA-F]{1,6}" + whitespace + - "?|\\\\[^\\r\\n\\f]|[\\w-]|[^\0-\\x7f])+", - - // Attribute selectors: http://www.w3.org/TR/selectors/#attribute-selectors - attributes = "\\[" + whitespace + "*(" + identifier + ")(?:" + whitespace + - - // Operator (capture 2) - "*([*^$|!~]?=)" + whitespace + - - // "Attribute values must be CSS identifiers [capture 5] - // or strings [capture 3 or capture 4]" - "*(?:'((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\"|(" + identifier + "))|)" + - whitespace + "*\\]", - - pseudos = ":(" + identifier + ")(?:\\((" + - - // To reduce the number of selectors needing tokenize in the preFilter, prefer arguments: - // 1. quoted (capture 3; capture 4 or capture 5) - "('((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\")|" + - - // 2. simple (capture 6) - "((?:\\\\.|[^\\\\()[\\]]|" + attributes + ")*)|" + - - // 3. anything else (capture 2) - ".*" + - ")\\)|)", - - // Leading and non-escaped trailing whitespace, capturing some non-whitespace characters preceding the latter - rwhitespace = new RegExp( whitespace + "+", "g" ), - rtrim = new RegExp( "^" + whitespace + "+|((?:^|[^\\\\])(?:\\\\.)*)" + - whitespace + "+$", "g" ), - - rcomma = new RegExp( "^" + whitespace + "*," + whitespace + "*" ), - rcombinators = new RegExp( "^" + whitespace + "*([>+~]|" + whitespace + ")" + whitespace + - "*" ), - rdescend = new RegExp( whitespace + "|>" ), - - rpseudo = new RegExp( pseudos ), - ridentifier = new RegExp( "^" + identifier + "$" ), - - matchExpr = { - "ID": new RegExp( "^#(" + identifier + ")" ), - "CLASS": new RegExp( "^\\.(" + identifier + ")" ), - "TAG": new RegExp( "^(" + identifier + "|[*])" ), - "ATTR": new RegExp( "^" + attributes ), - "PSEUDO": new RegExp( "^" + pseudos ), - "CHILD": new RegExp( "^:(only|first|last|nth|nth-last)-(child|of-type)(?:\\(" + - whitespace + "*(even|odd|(([+-]|)(\\d*)n|)" + whitespace + "*(?:([+-]|)" + - whitespace + "*(\\d+)|))" + whitespace + "*\\)|)", "i" ), - "bool": new RegExp( "^(?:" + booleans + ")$", "i" ), - - // For use in libraries implementing .is() - // We use this for POS matching in `select` - "needsContext": new RegExp( "^" + whitespace + - "*[>+~]|:(even|odd|eq|gt|lt|nth|first|last)(?:\\(" + whitespace + - "*((?:-\\d)?\\d*)" + whitespace + "*\\)|)(?=[^-]|$)", "i" ) - }, - - rhtml = /HTML$/i, - rinputs = /^(?:input|select|textarea|button)$/i, - rheader = /^h\d$/i, - - rnative = /^[^{]+\{\s*\[native \w/, - - // Easily-parseable/retrievable ID or TAG or CLASS selectors - rquickExpr = /^(?:#([\w-]+)|(\w+)|\.([\w-]+))$/, - - rsibling = /[+~]/, - - // CSS escapes - // http://www.w3.org/TR/CSS21/syndata.html#escaped-characters - runescape = new RegExp( "\\\\[\\da-fA-F]{1,6}" + whitespace + "?|\\\\([^\\r\\n\\f])", "g" ), - funescape = function( escape, nonHex ) { - var high = "0x" + escape.slice( 1 ) - 0x10000; - - return nonHex ? - - // Strip the backslash prefix from a non-hex escape sequence - nonHex : - - // Replace a hexadecimal escape sequence with the encoded Unicode code point - // Support: IE <=11+ - // For values outside the Basic Multilingual Plane (BMP), manually construct a - // surrogate pair - high < 0 ? - String.fromCharCode( high + 0x10000 ) : - String.fromCharCode( high >> 10 | 0xD800, high & 0x3FF | 0xDC00 ); - }, - - // CSS string/identifier serialization - // https://drafts.csswg.org/cssom/#common-serializing-idioms - rcssescape = /([\0-\x1f\x7f]|^-?\d)|^-$|[^\0-\x1f\x7f-\uFFFF\w-]/g, - fcssescape = function( ch, asCodePoint ) { - if ( asCodePoint ) { - - // U+0000 NULL becomes U+FFFD REPLACEMENT CHARACTER - if ( ch === "\0" ) { - return "\uFFFD"; - } - - // Control characters and (dependent upon position) numbers get escaped as code points - return ch.slice( 0, -1 ) + "\\" + - ch.charCodeAt( ch.length - 1 ).toString( 16 ) + " "; - } - - // Other potentially-special ASCII characters get backslash-escaped - return "\\" + ch; - }, - - // Used for iframes - // See setDocument() - // Removing the function wrapper causes a "Permission Denied" - // error in IE - unloadHandler = function() { - setDocument(); - }, - - inDisabledFieldset = addCombinator( - function( elem ) { - return elem.disabled === true && elem.nodeName.toLowerCase() === "fieldset"; - }, - { dir: "parentNode", next: "legend" } - ); - -// Optimize for push.apply( _, NodeList ) -try { - push.apply( - ( arr = slice.call( preferredDoc.childNodes ) ), - preferredDoc.childNodes - ); - - // Support: Android<4.0 - // Detect silently failing push.apply - // eslint-disable-next-line no-unused-expressions - arr[ preferredDoc.childNodes.length ].nodeType; -} catch ( e ) { - push = { apply: arr.length ? - - // Leverage slice if possible - function( target, els ) { - pushNative.apply( target, slice.call( els ) ); - } : - - // Support: IE<9 - // Otherwise append directly - function( target, els ) { - var j = target.length, - i = 0; - - // Can't trust NodeList.length - while ( ( target[ j++ ] = els[ i++ ] ) ) {} - target.length = j - 1; - } - }; -} - -function Sizzle( selector, context, results, seed ) { - var m, i, elem, nid, match, groups, newSelector, - newContext = context && context.ownerDocument, - - // nodeType defaults to 9, since context defaults to document - nodeType = context ? context.nodeType : 9; - - results = results || []; - - // Return early from calls with invalid selector or context - if ( typeof selector !== "string" || !selector || - nodeType !== 1 && nodeType !== 9 && nodeType !== 11 ) { - - return results; - } - - // Try to shortcut find operations (as opposed to filters) in HTML documents - if ( !seed ) { - setDocument( context ); - context = context || document; - - if ( documentIsHTML ) { - - // If the selector is sufficiently simple, try using a "get*By*" DOM method - // (excepting DocumentFragment context, where the methods don't exist) - if ( nodeType !== 11 && ( match = rquickExpr.exec( selector ) ) ) { - - // ID selector - if ( ( m = match[ 1 ] ) ) { - - // Document context - if ( nodeType === 9 ) { - if ( ( elem = context.getElementById( m ) ) ) { - - // Support: IE, Opera, Webkit - // TODO: identify versions - // getElementById can match elements by name instead of ID - if ( elem.id === m ) { - results.push( elem ); - return results; - } - } else { - return results; - } - - // Element context - } else { - - // Support: IE, Opera, Webkit - // TODO: identify versions - // getElementById can match elements by name instead of ID - if ( newContext && ( elem = newContext.getElementById( m ) ) && - contains( context, elem ) && - elem.id === m ) { - - results.push( elem ); - return results; - } - } - - // Type selector - } else if ( match[ 2 ] ) { - push.apply( results, context.getElementsByTagName( selector ) ); - return results; - - // Class selector - } else if ( ( m = match[ 3 ] ) && support.getElementsByClassName && - context.getElementsByClassName ) { - - push.apply( results, context.getElementsByClassName( m ) ); - return results; - } - } - - // Take advantage of querySelectorAll - if ( support.qsa && - !nonnativeSelectorCache[ selector + " " ] && - ( !rbuggyQSA || !rbuggyQSA.test( selector ) ) && - - // Support: IE 8 only - // Exclude object elements - ( nodeType !== 1 || context.nodeName.toLowerCase() !== "object" ) ) { - - newSelector = selector; - newContext = context; - - // qSA considers elements outside a scoping root when evaluating child or - // descendant combinators, which is not what we want. - // In such cases, we work around the behavior by prefixing every selector in the - // list with an ID selector referencing the scope context. - // The technique has to be used as well when a leading combinator is used - // as such selectors are not recognized by querySelectorAll. - // Thanks to Andrew Dupont for this technique. - if ( nodeType === 1 && - ( rdescend.test( selector ) || rcombinators.test( selector ) ) ) { - - // Expand context for sibling selectors - newContext = rsibling.test( selector ) && testContext( context.parentNode ) || - context; - - // We can use :scope instead of the ID hack if the browser - // supports it & if we're not changing the context. - if ( newContext !== context || !support.scope ) { - - // Capture the context ID, setting it first if necessary - if ( ( nid = context.getAttribute( "id" ) ) ) { - nid = nid.replace( rcssescape, fcssescape ); - } else { - context.setAttribute( "id", ( nid = expando ) ); - } - } - - // Prefix every selector in the list - groups = tokenize( selector ); - i = groups.length; - while ( i-- ) { - groups[ i ] = ( nid ? "#" + nid : ":scope" ) + " " + - toSelector( groups[ i ] ); - } - newSelector = groups.join( "," ); - } - - try { - push.apply( results, - newContext.querySelectorAll( newSelector ) - ); - return results; - } catch ( qsaError ) { - nonnativeSelectorCache( selector, true ); - } finally { - if ( nid === expando ) { - context.removeAttribute( "id" ); - } - } - } - } - } - - // All others - return select( selector.replace( rtrim, "$1" ), context, results, seed ); -} - -/** - * Create key-value caches of limited size - * @returns {function(string, object)} Returns the Object data after storing it on itself with - * property name the (space-suffixed) string and (if the cache is larger than Expr.cacheLength) - * deleting the oldest entry - */ -function createCache() { - var keys = []; - - function cache( key, value ) { - - // Use (key + " ") to avoid collision with native prototype properties (see Issue #157) - if ( keys.push( key + " " ) > Expr.cacheLength ) { - - // Only keep the most recent entries - delete cache[ keys.shift() ]; - } - return ( cache[ key + " " ] = value ); - } - return cache; -} - -/** - * Mark a function for special use by Sizzle - * @param {Function} fn The function to mark - */ -function markFunction( fn ) { - fn[ expando ] = true; - return fn; -} - -/** - * Support testing using an element - * @param {Function} fn Passed the created element and returns a boolean result - */ -function assert( fn ) { - var el = document.createElement( "fieldset" ); - - try { - return !!fn( el ); - } catch ( e ) { - return false; - } finally { - - // Remove from its parent by default - if ( el.parentNode ) { - el.parentNode.removeChild( el ); - } - - // release memory in IE - el = null; - } -} - -/** - * Adds the same handler for all of the specified attrs - * @param {String} attrs Pipe-separated list of attributes - * @param {Function} handler The method that will be applied - */ -function addHandle( attrs, handler ) { - var arr = attrs.split( "|" ), - i = arr.length; - - while ( i-- ) { - Expr.attrHandle[ arr[ i ] ] = handler; - } -} - -/** - * Checks document order of two siblings - * @param {Element} a - * @param {Element} b - * @returns {Number} Returns less than 0 if a precedes b, greater than 0 if a follows b - */ -function siblingCheck( a, b ) { - var cur = b && a, - diff = cur && a.nodeType === 1 && b.nodeType === 1 && - a.sourceIndex - b.sourceIndex; - - // Use IE sourceIndex if available on both nodes - if ( diff ) { - return diff; - } - - // Check if b follows a - if ( cur ) { - while ( ( cur = cur.nextSibling ) ) { - if ( cur === b ) { - return -1; - } - } - } - - return a ? 1 : -1; -} - -/** - * Returns a function to use in pseudos for input types - * @param {String} type - */ -function createInputPseudo( type ) { - return function( elem ) { - var name = elem.nodeName.toLowerCase(); - return name === "input" && elem.type === type; - }; -} - -/** - * Returns a function to use in pseudos for buttons - * @param {String} type - */ -function createButtonPseudo( type ) { - return function( elem ) { - var name = elem.nodeName.toLowerCase(); - return ( name === "input" || name === "button" ) && elem.type === type; - }; -} - -/** - * Returns a function to use in pseudos for :enabled/:disabled - * @param {Boolean} disabled true for :disabled; false for :enabled - */ -function createDisabledPseudo( disabled ) { - - // Known :disabled false positives: fieldset[disabled] > legend:nth-of-type(n+2) :can-disable - return function( elem ) { - - // Only certain elements can match :enabled or :disabled - // https://html.spec.whatwg.org/multipage/scripting.html#selector-enabled - // https://html.spec.whatwg.org/multipage/scripting.html#selector-disabled - if ( "form" in elem ) { - - // Check for inherited disabledness on relevant non-disabled elements: - // * listed form-associated elements in a disabled fieldset - // https://html.spec.whatwg.org/multipage/forms.html#category-listed - // https://html.spec.whatwg.org/multipage/forms.html#concept-fe-disabled - // * option elements in a disabled optgroup - // https://html.spec.whatwg.org/multipage/forms.html#concept-option-disabled - // All such elements have a "form" property. - if ( elem.parentNode && elem.disabled === false ) { - - // Option elements defer to a parent optgroup if present - if ( "label" in elem ) { - if ( "label" in elem.parentNode ) { - return elem.parentNode.disabled === disabled; - } else { - return elem.disabled === disabled; - } - } - - // Support: IE 6 - 11 - // Use the isDisabled shortcut property to check for disabled fieldset ancestors - return elem.isDisabled === disabled || - - // Where there is no isDisabled, check manually - /* jshint -W018 */ - elem.isDisabled !== !disabled && - inDisabledFieldset( elem ) === disabled; - } - - return elem.disabled === disabled; - - // Try to winnow out elements that can't be disabled before trusting the disabled property. - // Some victims get caught in our net (label, legend, menu, track), but it shouldn't - // even exist on them, let alone have a boolean value. - } else if ( "label" in elem ) { - return elem.disabled === disabled; - } - - // Remaining elements are neither :enabled nor :disabled - return false; - }; -} - -/** - * Returns a function to use in pseudos for positionals - * @param {Function} fn - */ -function createPositionalPseudo( fn ) { - return markFunction( function( argument ) { - argument = +argument; - return markFunction( function( seed, matches ) { - var j, - matchIndexes = fn( [], seed.length, argument ), - i = matchIndexes.length; - - // Match elements found at the specified indexes - while ( i-- ) { - if ( seed[ ( j = matchIndexes[ i ] ) ] ) { - seed[ j ] = !( matches[ j ] = seed[ j ] ); - } - } - } ); - } ); -} - -/** - * Checks a node for validity as a Sizzle context - * @param {Element|Object=} context - * @returns {Element|Object|Boolean} The input node if acceptable, otherwise a falsy value - */ -function testContext( context ) { - return context && typeof context.getElementsByTagName !== "undefined" && context; -} - -// Expose support vars for convenience -support = Sizzle.support = {}; - -/** - * Detects XML nodes - * @param {Element|Object} elem An element or a document - * @returns {Boolean} True iff elem is a non-HTML XML node - */ -isXML = Sizzle.isXML = function( elem ) { - var namespace = elem.namespaceURI, - docElem = ( elem.ownerDocument || elem ).documentElement; - - // Support: IE <=8 - // Assume HTML when documentElement doesn't yet exist, such as inside loading iframes - // https://bugs.jquery.com/ticket/4833 - return !rhtml.test( namespace || docElem && docElem.nodeName || "HTML" ); -}; - -/** - * Sets document-related variables once based on the current document - * @param {Element|Object} [doc] An element or document object to use to set the document - * @returns {Object} Returns the current document - */ -setDocument = Sizzle.setDocument = function( node ) { - var hasCompare, subWindow, - doc = node ? node.ownerDocument || node : preferredDoc; - - // Return early if doc is invalid or already selected - // Support: IE 11+, Edge 17 - 18+ - // IE/Edge sometimes throw a "Permission denied" error when strict-comparing - // two documents; shallow comparisons work. - // eslint-disable-next-line eqeqeq - if ( doc == document || doc.nodeType !== 9 || !doc.documentElement ) { - return document; - } - - // Update global variables - document = doc; - docElem = document.documentElement; - documentIsHTML = !isXML( document ); - - // Support: IE 9 - 11+, Edge 12 - 18+ - // Accessing iframe documents after unload throws "permission denied" errors (jQuery #13936) - // Support: IE 11+, Edge 17 - 18+ - // IE/Edge sometimes throw a "Permission denied" error when strict-comparing - // two documents; shallow comparisons work. - // eslint-disable-next-line eqeqeq - if ( preferredDoc != document && - ( subWindow = document.defaultView ) && subWindow.top !== subWindow ) { - - // Support: IE 11, Edge - if ( subWindow.addEventListener ) { - subWindow.addEventListener( "unload", unloadHandler, false ); - - // Support: IE 9 - 10 only - } else if ( subWindow.attachEvent ) { - subWindow.attachEvent( "onunload", unloadHandler ); - } - } - - // Support: IE 8 - 11+, Edge 12 - 18+, Chrome <=16 - 25 only, Firefox <=3.6 - 31 only, - // Safari 4 - 5 only, Opera <=11.6 - 12.x only - // IE/Edge & older browsers don't support the :scope pseudo-class. - // Support: Safari 6.0 only - // Safari 6.0 supports :scope but it's an alias of :root there. - support.scope = assert( function( el ) { - docElem.appendChild( el ).appendChild( document.createElement( "div" ) ); - return typeof el.querySelectorAll !== "undefined" && - !el.querySelectorAll( ":scope fieldset div" ).length; - } ); - - /* Attributes - ---------------------------------------------------------------------- */ - - // Support: IE<8 - // Verify that getAttribute really returns attributes and not properties - // (excepting IE8 booleans) - support.attributes = assert( function( el ) { - el.className = "i"; - return !el.getAttribute( "className" ); - } ); - - /* getElement(s)By* - ---------------------------------------------------------------------- */ - - // Check if getElementsByTagName("*") returns only elements - support.getElementsByTagName = assert( function( el ) { - el.appendChild( document.createComment( "" ) ); - return !el.getElementsByTagName( "*" ).length; - } ); - - // Support: IE<9 - support.getElementsByClassName = rnative.test( document.getElementsByClassName ); - - // Support: IE<10 - // Check if getElementById returns elements by name - // The broken getElementById methods don't pick up programmatically-set names, - // so use a roundabout getElementsByName test - support.getById = assert( function( el ) { - docElem.appendChild( el ).id = expando; - return !document.getElementsByName || !document.getElementsByName( expando ).length; - } ); - - // ID filter and find - if ( support.getById ) { - Expr.filter[ "ID" ] = function( id ) { - var attrId = id.replace( runescape, funescape ); - return function( elem ) { - return elem.getAttribute( "id" ) === attrId; - }; - }; - Expr.find[ "ID" ] = function( id, context ) { - if ( typeof context.getElementById !== "undefined" && documentIsHTML ) { - var elem = context.getElementById( id ); - return elem ? [ elem ] : []; - } - }; - } else { - Expr.filter[ "ID" ] = function( id ) { - var attrId = id.replace( runescape, funescape ); - return function( elem ) { - var node = typeof elem.getAttributeNode !== "undefined" && - elem.getAttributeNode( "id" ); - return node && node.value === attrId; - }; - }; - - // Support: IE 6 - 7 only - // getElementById is not reliable as a find shortcut - Expr.find[ "ID" ] = function( id, context ) { - if ( typeof context.getElementById !== "undefined" && documentIsHTML ) { - var node, i, elems, - elem = context.getElementById( id ); - - if ( elem ) { - - // Verify the id attribute - node = elem.getAttributeNode( "id" ); - if ( node && node.value === id ) { - return [ elem ]; - } - - // Fall back on getElementsByName - elems = context.getElementsByName( id ); - i = 0; - while ( ( elem = elems[ i++ ] ) ) { - node = elem.getAttributeNode( "id" ); - if ( node && node.value === id ) { - return [ elem ]; - } - } - } - - return []; - } - }; - } - - // Tag - Expr.find[ "TAG" ] = support.getElementsByTagName ? - function( tag, context ) { - if ( typeof context.getElementsByTagName !== "undefined" ) { - return context.getElementsByTagName( tag ); - - // DocumentFragment nodes don't have gEBTN - } else if ( support.qsa ) { - return context.querySelectorAll( tag ); - } - } : - - function( tag, context ) { - var elem, - tmp = [], - i = 0, - - // By happy coincidence, a (broken) gEBTN appears on DocumentFragment nodes too - results = context.getElementsByTagName( tag ); - - // Filter out possible comments - if ( tag === "*" ) { - while ( ( elem = results[ i++ ] ) ) { - if ( elem.nodeType === 1 ) { - tmp.push( elem ); - } - } - - return tmp; - } - return results; - }; - - // Class - Expr.find[ "CLASS" ] = support.getElementsByClassName && function( className, context ) { - if ( typeof context.getElementsByClassName !== "undefined" && documentIsHTML ) { - return context.getElementsByClassName( className ); - } - }; - - /* QSA/matchesSelector - ---------------------------------------------------------------------- */ - - // QSA and matchesSelector support - - // matchesSelector(:active) reports false when true (IE9/Opera 11.5) - rbuggyMatches = []; - - // qSa(:focus) reports false when true (Chrome 21) - // We allow this because of a bug in IE8/9 that throws an error - // whenever `document.activeElement` is accessed on an iframe - // So, we allow :focus to pass through QSA all the time to avoid the IE error - // See https://bugs.jquery.com/ticket/13378 - rbuggyQSA = []; - - if ( ( support.qsa = rnative.test( document.querySelectorAll ) ) ) { - - // Build QSA regex - // Regex strategy adopted from Diego Perini - assert( function( el ) { - - var input; - - // Select is set to empty string on purpose - // This is to test IE's treatment of not explicitly - // setting a boolean content attribute, - // since its presence should be enough - // https://bugs.jquery.com/ticket/12359 - docElem.appendChild( el ).innerHTML = "" + - ""; - - // Support: IE8, Opera 11-12.16 - // Nothing should be selected when empty strings follow ^= or $= or *= - // The test attribute must be unknown in Opera but "safe" for WinRT - // https://msdn.microsoft.com/en-us/library/ie/hh465388.aspx#attribute_section - if ( el.querySelectorAll( "[msallowcapture^='']" ).length ) { - rbuggyQSA.push( "[*^$]=" + whitespace + "*(?:''|\"\")" ); - } - - // Support: IE8 - // Boolean attributes and "value" are not treated correctly - if ( !el.querySelectorAll( "[selected]" ).length ) { - rbuggyQSA.push( "\\[" + whitespace + "*(?:value|" + booleans + ")" ); - } - - // Support: Chrome<29, Android<4.4, Safari<7.0+, iOS<7.0+, PhantomJS<1.9.8+ - if ( !el.querySelectorAll( "[id~=" + expando + "-]" ).length ) { - rbuggyQSA.push( "~=" ); - } - - // Support: IE 11+, Edge 15 - 18+ - // IE 11/Edge don't find elements on a `[name='']` query in some cases. - // Adding a temporary attribute to the document before the selection works - // around the issue. - // Interestingly, IE 10 & older don't seem to have the issue. - input = document.createElement( "input" ); - input.setAttribute( "name", "" ); - el.appendChild( input ); - if ( !el.querySelectorAll( "[name='']" ).length ) { - rbuggyQSA.push( "\\[" + whitespace + "*name" + whitespace + "*=" + - whitespace + "*(?:''|\"\")" ); - } - - // Webkit/Opera - :checked should return selected option elements - // http://www.w3.org/TR/2011/REC-css3-selectors-20110929/#checked - // IE8 throws error here and will not see later tests - if ( !el.querySelectorAll( ":checked" ).length ) { - rbuggyQSA.push( ":checked" ); - } - - // Support: Safari 8+, iOS 8+ - // https://bugs.webkit.org/show_bug.cgi?id=136851 - // In-page `selector#id sibling-combinator selector` fails - if ( !el.querySelectorAll( "a#" + expando + "+*" ).length ) { - rbuggyQSA.push( ".#.+[+~]" ); - } - - // Support: Firefox <=3.6 - 5 only - // Old Firefox doesn't throw on a badly-escaped identifier. - el.querySelectorAll( "\\\f" ); - rbuggyQSA.push( "[\\r\\n\\f]" ); - } ); - - assert( function( el ) { - el.innerHTML = "" + - ""; - - // Support: Windows 8 Native Apps - // The type and name attributes are restricted during .innerHTML assignment - var input = document.createElement( "input" ); - input.setAttribute( "type", "hidden" ); - el.appendChild( input ).setAttribute( "name", "D" ); - - // Support: IE8 - // Enforce case-sensitivity of name attribute - if ( el.querySelectorAll( "[name=d]" ).length ) { - rbuggyQSA.push( "name" + whitespace + "*[*^$|!~]?=" ); - } - - // FF 3.5 - :enabled/:disabled and hidden elements (hidden elements are still enabled) - // IE8 throws error here and will not see later tests - if ( el.querySelectorAll( ":enabled" ).length !== 2 ) { - rbuggyQSA.push( ":enabled", ":disabled" ); - } - - // Support: IE9-11+ - // IE's :disabled selector does not pick up the children of disabled fieldsets - docElem.appendChild( el ).disabled = true; - if ( el.querySelectorAll( ":disabled" ).length !== 2 ) { - rbuggyQSA.push( ":enabled", ":disabled" ); - } - - // Support: Opera 10 - 11 only - // Opera 10-11 does not throw on post-comma invalid pseudos - el.querySelectorAll( "*,:x" ); - rbuggyQSA.push( ",.*:" ); - } ); - } - - if ( ( support.matchesSelector = rnative.test( ( matches = docElem.matches || - docElem.webkitMatchesSelector || - docElem.mozMatchesSelector || - docElem.oMatchesSelector || - docElem.msMatchesSelector ) ) ) ) { - - assert( function( el ) { - - // Check to see if it's possible to do matchesSelector - // on a disconnected node (IE 9) - support.disconnectedMatch = matches.call( el, "*" ); - - // This should fail with an exception - // Gecko does not error, returns false instead - matches.call( el, "[s!='']:x" ); - rbuggyMatches.push( "!=", pseudos ); - } ); - } - - rbuggyQSA = rbuggyQSA.length && new RegExp( rbuggyQSA.join( "|" ) ); - rbuggyMatches = rbuggyMatches.length && new RegExp( rbuggyMatches.join( "|" ) ); - - /* Contains - ---------------------------------------------------------------------- */ - hasCompare = rnative.test( docElem.compareDocumentPosition ); - - // Element contains another - // Purposefully self-exclusive - // As in, an element does not contain itself - contains = hasCompare || rnative.test( docElem.contains ) ? - function( a, b ) { - var adown = a.nodeType === 9 ? a.documentElement : a, - bup = b && b.parentNode; - return a === bup || !!( bup && bup.nodeType === 1 && ( - adown.contains ? - adown.contains( bup ) : - a.compareDocumentPosition && a.compareDocumentPosition( bup ) & 16 - ) ); - } : - function( a, b ) { - if ( b ) { - while ( ( b = b.parentNode ) ) { - if ( b === a ) { - return true; - } - } - } - return false; - }; - - /* Sorting - ---------------------------------------------------------------------- */ - - // Document order sorting - sortOrder = hasCompare ? - function( a, b ) { - - // Flag for duplicate removal - if ( a === b ) { - hasDuplicate = true; - return 0; - } - - // Sort on method existence if only one input has compareDocumentPosition - var compare = !a.compareDocumentPosition - !b.compareDocumentPosition; - if ( compare ) { - return compare; - } - - // Calculate position if both inputs belong to the same document - // Support: IE 11+, Edge 17 - 18+ - // IE/Edge sometimes throw a "Permission denied" error when strict-comparing - // two documents; shallow comparisons work. - // eslint-disable-next-line eqeqeq - compare = ( a.ownerDocument || a ) == ( b.ownerDocument || b ) ? - a.compareDocumentPosition( b ) : - - // Otherwise we know they are disconnected - 1; - - // Disconnected nodes - if ( compare & 1 || - ( !support.sortDetached && b.compareDocumentPosition( a ) === compare ) ) { - - // Choose the first element that is related to our preferred document - // Support: IE 11+, Edge 17 - 18+ - // IE/Edge sometimes throw a "Permission denied" error when strict-comparing - // two documents; shallow comparisons work. - // eslint-disable-next-line eqeqeq - if ( a == document || a.ownerDocument == preferredDoc && - contains( preferredDoc, a ) ) { - return -1; - } - - // Support: IE 11+, Edge 17 - 18+ - // IE/Edge sometimes throw a "Permission denied" error when strict-comparing - // two documents; shallow comparisons work. - // eslint-disable-next-line eqeqeq - if ( b == document || b.ownerDocument == preferredDoc && - contains( preferredDoc, b ) ) { - return 1; - } - - // Maintain original order - return sortInput ? - ( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) : - 0; - } - - return compare & 4 ? -1 : 1; - } : - function( a, b ) { - - // Exit early if the nodes are identical - if ( a === b ) { - hasDuplicate = true; - return 0; - } - - var cur, - i = 0, - aup = a.parentNode, - bup = b.parentNode, - ap = [ a ], - bp = [ b ]; - - // Parentless nodes are either documents or disconnected - if ( !aup || !bup ) { - - // Support: IE 11+, Edge 17 - 18+ - // IE/Edge sometimes throw a "Permission denied" error when strict-comparing - // two documents; shallow comparisons work. - /* eslint-disable eqeqeq */ - return a == document ? -1 : - b == document ? 1 : - /* eslint-enable eqeqeq */ - aup ? -1 : - bup ? 1 : - sortInput ? - ( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) : - 0; - - // If the nodes are siblings, we can do a quick check - } else if ( aup === bup ) { - return siblingCheck( a, b ); - } - - // Otherwise we need full lists of their ancestors for comparison - cur = a; - while ( ( cur = cur.parentNode ) ) { - ap.unshift( cur ); - } - cur = b; - while ( ( cur = cur.parentNode ) ) { - bp.unshift( cur ); - } - - // Walk down the tree looking for a discrepancy - while ( ap[ i ] === bp[ i ] ) { - i++; - } - - return i ? - - // Do a sibling check if the nodes have a common ancestor - siblingCheck( ap[ i ], bp[ i ] ) : - - // Otherwise nodes in our document sort first - // Support: IE 11+, Edge 17 - 18+ - // IE/Edge sometimes throw a "Permission denied" error when strict-comparing - // two documents; shallow comparisons work. - /* eslint-disable eqeqeq */ - ap[ i ] == preferredDoc ? -1 : - bp[ i ] == preferredDoc ? 1 : - /* eslint-enable eqeqeq */ - 0; - }; - - return document; -}; - -Sizzle.matches = function( expr, elements ) { - return Sizzle( expr, null, null, elements ); -}; - -Sizzle.matchesSelector = function( elem, expr ) { - setDocument( elem ); - - if ( support.matchesSelector && documentIsHTML && - !nonnativeSelectorCache[ expr + " " ] && - ( !rbuggyMatches || !rbuggyMatches.test( expr ) ) && - ( !rbuggyQSA || !rbuggyQSA.test( expr ) ) ) { - - try { - var ret = matches.call( elem, expr ); - - // IE 9's matchesSelector returns false on disconnected nodes - if ( ret || support.disconnectedMatch || - - // As well, disconnected nodes are said to be in a document - // fragment in IE 9 - elem.document && elem.document.nodeType !== 11 ) { - return ret; - } - } catch ( e ) { - nonnativeSelectorCache( expr, true ); - } - } - - return Sizzle( expr, document, null, [ elem ] ).length > 0; -}; - -Sizzle.contains = function( context, elem ) { - - // Set document vars if needed - // Support: IE 11+, Edge 17 - 18+ - // IE/Edge sometimes throw a "Permission denied" error when strict-comparing - // two documents; shallow comparisons work. - // eslint-disable-next-line eqeqeq - if ( ( context.ownerDocument || context ) != document ) { - setDocument( context ); - } - return contains( context, elem ); -}; - -Sizzle.attr = function( elem, name ) { - - // Set document vars if needed - // Support: IE 11+, Edge 17 - 18+ - // IE/Edge sometimes throw a "Permission denied" error when strict-comparing - // two documents; shallow comparisons work. - // eslint-disable-next-line eqeqeq - if ( ( elem.ownerDocument || elem ) != document ) { - setDocument( elem ); - } - - var fn = Expr.attrHandle[ name.toLowerCase() ], - - // Don't get fooled by Object.prototype properties (jQuery #13807) - val = fn && hasOwn.call( Expr.attrHandle, name.toLowerCase() ) ? - fn( elem, name, !documentIsHTML ) : - undefined; - - return val !== undefined ? - val : - support.attributes || !documentIsHTML ? - elem.getAttribute( name ) : - ( val = elem.getAttributeNode( name ) ) && val.specified ? - val.value : - null; -}; - -Sizzle.escape = function( sel ) { - return ( sel + "" ).replace( rcssescape, fcssescape ); -}; - -Sizzle.error = function( msg ) { - throw new Error( "Syntax error, unrecognized expression: " + msg ); -}; - -/** - * Document sorting and removing duplicates - * @param {ArrayLike} results - */ -Sizzle.uniqueSort = function( results ) { - var elem, - duplicates = [], - j = 0, - i = 0; - - // Unless we *know* we can detect duplicates, assume their presence - hasDuplicate = !support.detectDuplicates; - sortInput = !support.sortStable && results.slice( 0 ); - results.sort( sortOrder ); - - if ( hasDuplicate ) { - while ( ( elem = results[ i++ ] ) ) { - if ( elem === results[ i ] ) { - j = duplicates.push( i ); - } - } - while ( j-- ) { - results.splice( duplicates[ j ], 1 ); - } - } - - // Clear input after sorting to release objects - // See https://github.com/jquery/sizzle/pull/225 - sortInput = null; - - return results; -}; - -/** - * Utility function for retrieving the text value of an array of DOM nodes - * @param {Array|Element} elem - */ -getText = Sizzle.getText = function( elem ) { - var node, - ret = "", - i = 0, - nodeType = elem.nodeType; - - if ( !nodeType ) { - - // If no nodeType, this is expected to be an array - while ( ( node = elem[ i++ ] ) ) { - - // Do not traverse comment nodes - ret += getText( node ); - } - } else if ( nodeType === 1 || nodeType === 9 || nodeType === 11 ) { - - // Use textContent for elements - // innerText usage removed for consistency of new lines (jQuery #11153) - if ( typeof elem.textContent === "string" ) { - return elem.textContent; - } else { - - // Traverse its children - for ( elem = elem.firstChild; elem; elem = elem.nextSibling ) { - ret += getText( elem ); - } - } - } else if ( nodeType === 3 || nodeType === 4 ) { - return elem.nodeValue; - } - - // Do not include comment or processing instruction nodes - - return ret; -}; - -Expr = Sizzle.selectors = { - - // Can be adjusted by the user - cacheLength: 50, - - createPseudo: markFunction, - - match: matchExpr, - - attrHandle: {}, - - find: {}, - - relative: { - ">": { dir: "parentNode", first: true }, - " ": { dir: "parentNode" }, - "+": { dir: "previousSibling", first: true }, - "~": { dir: "previousSibling" } - }, - - preFilter: { - "ATTR": function( match ) { - match[ 1 ] = match[ 1 ].replace( runescape, funescape ); - - // Move the given value to match[3] whether quoted or unquoted - match[ 3 ] = ( match[ 3 ] || match[ 4 ] || - match[ 5 ] || "" ).replace( runescape, funescape ); - - if ( match[ 2 ] === "~=" ) { - match[ 3 ] = " " + match[ 3 ] + " "; - } - - return match.slice( 0, 4 ); - }, - - "CHILD": function( match ) { - - /* matches from matchExpr["CHILD"] - 1 type (only|nth|...) - 2 what (child|of-type) - 3 argument (even|odd|\d*|\d*n([+-]\d+)?|...) - 4 xn-component of xn+y argument ([+-]?\d*n|) - 5 sign of xn-component - 6 x of xn-component - 7 sign of y-component - 8 y of y-component - */ - match[ 1 ] = match[ 1 ].toLowerCase(); - - if ( match[ 1 ].slice( 0, 3 ) === "nth" ) { - - // nth-* requires argument - if ( !match[ 3 ] ) { - Sizzle.error( match[ 0 ] ); - } - - // numeric x and y parameters for Expr.filter.CHILD - // remember that false/true cast respectively to 0/1 - match[ 4 ] = +( match[ 4 ] ? - match[ 5 ] + ( match[ 6 ] || 1 ) : - 2 * ( match[ 3 ] === "even" || match[ 3 ] === "odd" ) ); - match[ 5 ] = +( ( match[ 7 ] + match[ 8 ] ) || match[ 3 ] === "odd" ); - - // other types prohibit arguments - } else if ( match[ 3 ] ) { - Sizzle.error( match[ 0 ] ); - } - - return match; - }, - - "PSEUDO": function( match ) { - var excess, - unquoted = !match[ 6 ] && match[ 2 ]; - - if ( matchExpr[ "CHILD" ].test( match[ 0 ] ) ) { - return null; - } - - // Accept quoted arguments as-is - if ( match[ 3 ] ) { - match[ 2 ] = match[ 4 ] || match[ 5 ] || ""; - - // Strip excess characters from unquoted arguments - } else if ( unquoted && rpseudo.test( unquoted ) && - - // Get excess from tokenize (recursively) - ( excess = tokenize( unquoted, true ) ) && - - // advance to the next closing parenthesis - ( excess = unquoted.indexOf( ")", unquoted.length - excess ) - unquoted.length ) ) { - - // excess is a negative index - match[ 0 ] = match[ 0 ].slice( 0, excess ); - match[ 2 ] = unquoted.slice( 0, excess ); - } - - // Return only captures needed by the pseudo filter method (type and argument) - return match.slice( 0, 3 ); - } - }, - - filter: { - - "TAG": function( nodeNameSelector ) { - var nodeName = nodeNameSelector.replace( runescape, funescape ).toLowerCase(); - return nodeNameSelector === "*" ? - function() { - return true; - } : - function( elem ) { - return elem.nodeName && elem.nodeName.toLowerCase() === nodeName; - }; - }, - - "CLASS": function( className ) { - var pattern = classCache[ className + " " ]; - - return pattern || - ( pattern = new RegExp( "(^|" + whitespace + - ")" + className + "(" + whitespace + "|$)" ) ) && classCache( - className, function( elem ) { - return pattern.test( - typeof elem.className === "string" && elem.className || - typeof elem.getAttribute !== "undefined" && - elem.getAttribute( "class" ) || - "" - ); - } ); - }, - - "ATTR": function( name, operator, check ) { - return function( elem ) { - var result = Sizzle.attr( elem, name ); - - if ( result == null ) { - return operator === "!="; - } - if ( !operator ) { - return true; - } - - result += ""; - - /* eslint-disable max-len */ - - return operator === "=" ? result === check : - operator === "!=" ? result !== check : - operator === "^=" ? check && result.indexOf( check ) === 0 : - operator === "*=" ? check && result.indexOf( check ) > -1 : - operator === "$=" ? check && result.slice( -check.length ) === check : - operator === "~=" ? ( " " + result.replace( rwhitespace, " " ) + " " ).indexOf( check ) > -1 : - operator === "|=" ? result === check || result.slice( 0, check.length + 1 ) === check + "-" : - false; - /* eslint-enable max-len */ - - }; - }, - - "CHILD": function( type, what, _argument, first, last ) { - var simple = type.slice( 0, 3 ) !== "nth", - forward = type.slice( -4 ) !== "last", - ofType = what === "of-type"; - - return first === 1 && last === 0 ? - - // Shortcut for :nth-*(n) - function( elem ) { - return !!elem.parentNode; - } : - - function( elem, _context, xml ) { - var cache, uniqueCache, outerCache, node, nodeIndex, start, - dir = simple !== forward ? "nextSibling" : "previousSibling", - parent = elem.parentNode, - name = ofType && elem.nodeName.toLowerCase(), - useCache = !xml && !ofType, - diff = false; - - if ( parent ) { - - // :(first|last|only)-(child|of-type) - if ( simple ) { - while ( dir ) { - node = elem; - while ( ( node = node[ dir ] ) ) { - if ( ofType ? - node.nodeName.toLowerCase() === name : - node.nodeType === 1 ) { - - return false; - } - } - - // Reverse direction for :only-* (if we haven't yet done so) - start = dir = type === "only" && !start && "nextSibling"; - } - return true; - } - - start = [ forward ? parent.firstChild : parent.lastChild ]; - - // non-xml :nth-child(...) stores cache data on `parent` - if ( forward && useCache ) { - - // Seek `elem` from a previously-cached index - - // ...in a gzip-friendly way - node = parent; - outerCache = node[ expando ] || ( node[ expando ] = {} ); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ node.uniqueID ] || - ( outerCache[ node.uniqueID ] = {} ); - - cache = uniqueCache[ type ] || []; - nodeIndex = cache[ 0 ] === dirruns && cache[ 1 ]; - diff = nodeIndex && cache[ 2 ]; - node = nodeIndex && parent.childNodes[ nodeIndex ]; - - while ( ( node = ++nodeIndex && node && node[ dir ] || - - // Fallback to seeking `elem` from the start - ( diff = nodeIndex = 0 ) || start.pop() ) ) { - - // When found, cache indexes on `parent` and break - if ( node.nodeType === 1 && ++diff && node === elem ) { - uniqueCache[ type ] = [ dirruns, nodeIndex, diff ]; - break; - } - } - - } else { - - // Use previously-cached element index if available - if ( useCache ) { - - // ...in a gzip-friendly way - node = elem; - outerCache = node[ expando ] || ( node[ expando ] = {} ); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ node.uniqueID ] || - ( outerCache[ node.uniqueID ] = {} ); - - cache = uniqueCache[ type ] || []; - nodeIndex = cache[ 0 ] === dirruns && cache[ 1 ]; - diff = nodeIndex; - } - - // xml :nth-child(...) - // or :nth-last-child(...) or :nth(-last)?-of-type(...) - if ( diff === false ) { - - // Use the same loop as above to seek `elem` from the start - while ( ( node = ++nodeIndex && node && node[ dir ] || - ( diff = nodeIndex = 0 ) || start.pop() ) ) { - - if ( ( ofType ? - node.nodeName.toLowerCase() === name : - node.nodeType === 1 ) && - ++diff ) { - - // Cache the index of each encountered element - if ( useCache ) { - outerCache = node[ expando ] || - ( node[ expando ] = {} ); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ node.uniqueID ] || - ( outerCache[ node.uniqueID ] = {} ); - - uniqueCache[ type ] = [ dirruns, diff ]; - } - - if ( node === elem ) { - break; - } - } - } - } - } - - // Incorporate the offset, then check against cycle size - diff -= last; - return diff === first || ( diff % first === 0 && diff / first >= 0 ); - } - }; - }, - - "PSEUDO": function( pseudo, argument ) { - - // pseudo-class names are case-insensitive - // http://www.w3.org/TR/selectors/#pseudo-classes - // Prioritize by case sensitivity in case custom pseudos are added with uppercase letters - // Remember that setFilters inherits from pseudos - var args, - fn = Expr.pseudos[ pseudo ] || Expr.setFilters[ pseudo.toLowerCase() ] || - Sizzle.error( "unsupported pseudo: " + pseudo ); - - // The user may use createPseudo to indicate that - // arguments are needed to create the filter function - // just as Sizzle does - if ( fn[ expando ] ) { - return fn( argument ); - } - - // But maintain support for old signatures - if ( fn.length > 1 ) { - args = [ pseudo, pseudo, "", argument ]; - return Expr.setFilters.hasOwnProperty( pseudo.toLowerCase() ) ? - markFunction( function( seed, matches ) { - var idx, - matched = fn( seed, argument ), - i = matched.length; - while ( i-- ) { - idx = indexOf( seed, matched[ i ] ); - seed[ idx ] = !( matches[ idx ] = matched[ i ] ); - } - } ) : - function( elem ) { - return fn( elem, 0, args ); - }; - } - - return fn; - } - }, - - pseudos: { - - // Potentially complex pseudos - "not": markFunction( function( selector ) { - - // Trim the selector passed to compile - // to avoid treating leading and trailing - // spaces as combinators - var input = [], - results = [], - matcher = compile( selector.replace( rtrim, "$1" ) ); - - return matcher[ expando ] ? - markFunction( function( seed, matches, _context, xml ) { - var elem, - unmatched = matcher( seed, null, xml, [] ), - i = seed.length; - - // Match elements unmatched by `matcher` - while ( i-- ) { - if ( ( elem = unmatched[ i ] ) ) { - seed[ i ] = !( matches[ i ] = elem ); - } - } - } ) : - function( elem, _context, xml ) { - input[ 0 ] = elem; - matcher( input, null, xml, results ); - - // Don't keep the element (issue #299) - input[ 0 ] = null; - return !results.pop(); - }; - } ), - - "has": markFunction( function( selector ) { - return function( elem ) { - return Sizzle( selector, elem ).length > 0; - }; - } ), - - "contains": markFunction( function( text ) { - text = text.replace( runescape, funescape ); - return function( elem ) { - return ( elem.textContent || getText( elem ) ).indexOf( text ) > -1; - }; - } ), - - // "Whether an element is represented by a :lang() selector - // is based solely on the element's language value - // being equal to the identifier C, - // or beginning with the identifier C immediately followed by "-". - // The matching of C against the element's language value is performed case-insensitively. - // The identifier C does not have to be a valid language name." - // http://www.w3.org/TR/selectors/#lang-pseudo - "lang": markFunction( function( lang ) { - - // lang value must be a valid identifier - if ( !ridentifier.test( lang || "" ) ) { - Sizzle.error( "unsupported lang: " + lang ); - } - lang = lang.replace( runescape, funescape ).toLowerCase(); - return function( elem ) { - var elemLang; - do { - if ( ( elemLang = documentIsHTML ? - elem.lang : - elem.getAttribute( "xml:lang" ) || elem.getAttribute( "lang" ) ) ) { - - elemLang = elemLang.toLowerCase(); - return elemLang === lang || elemLang.indexOf( lang + "-" ) === 0; - } - } while ( ( elem = elem.parentNode ) && elem.nodeType === 1 ); - return false; - }; - } ), - - // Miscellaneous - "target": function( elem ) { - var hash = window.location && window.location.hash; - return hash && hash.slice( 1 ) === elem.id; - }, - - "root": function( elem ) { - return elem === docElem; - }, - - "focus": function( elem ) { - return elem === document.activeElement && - ( !document.hasFocus || document.hasFocus() ) && - !!( elem.type || elem.href || ~elem.tabIndex ); - }, - - // Boolean properties - "enabled": createDisabledPseudo( false ), - "disabled": createDisabledPseudo( true ), - - "checked": function( elem ) { - - // In CSS3, :checked should return both checked and selected elements - // http://www.w3.org/TR/2011/REC-css3-selectors-20110929/#checked - var nodeName = elem.nodeName.toLowerCase(); - return ( nodeName === "input" && !!elem.checked ) || - ( nodeName === "option" && !!elem.selected ); - }, - - "selected": function( elem ) { - - // Accessing this property makes selected-by-default - // options in Safari work properly - if ( elem.parentNode ) { - // eslint-disable-next-line no-unused-expressions - elem.parentNode.selectedIndex; - } - - return elem.selected === true; - }, - - // Contents - "empty": function( elem ) { - - // http://www.w3.org/TR/selectors/#empty-pseudo - // :empty is negated by element (1) or content nodes (text: 3; cdata: 4; entity ref: 5), - // but not by others (comment: 8; processing instruction: 7; etc.) - // nodeType < 6 works because attributes (2) do not appear as children - for ( elem = elem.firstChild; elem; elem = elem.nextSibling ) { - if ( elem.nodeType < 6 ) { - return false; - } - } - return true; - }, - - "parent": function( elem ) { - return !Expr.pseudos[ "empty" ]( elem ); - }, - - // Element/input types - "header": function( elem ) { - return rheader.test( elem.nodeName ); - }, - - "input": function( elem ) { - return rinputs.test( elem.nodeName ); - }, - - "button": function( elem ) { - var name = elem.nodeName.toLowerCase(); - return name === "input" && elem.type === "button" || name === "button"; - }, - - "text": function( elem ) { - var attr; - return elem.nodeName.toLowerCase() === "input" && - elem.type === "text" && - - // Support: IE<8 - // New HTML5 attribute values (e.g., "search") appear with elem.type === "text" - ( ( attr = elem.getAttribute( "type" ) ) == null || - attr.toLowerCase() === "text" ); - }, - - // Position-in-collection - "first": createPositionalPseudo( function() { - return [ 0 ]; - } ), - - "last": createPositionalPseudo( function( _matchIndexes, length ) { - return [ length - 1 ]; - } ), - - "eq": createPositionalPseudo( function( _matchIndexes, length, argument ) { - return [ argument < 0 ? argument + length : argument ]; - } ), - - "even": createPositionalPseudo( function( matchIndexes, length ) { - var i = 0; - for ( ; i < length; i += 2 ) { - matchIndexes.push( i ); - } - return matchIndexes; - } ), - - "odd": createPositionalPseudo( function( matchIndexes, length ) { - var i = 1; - for ( ; i < length; i += 2 ) { - matchIndexes.push( i ); - } - return matchIndexes; - } ), - - "lt": createPositionalPseudo( function( matchIndexes, length, argument ) { - var i = argument < 0 ? - argument + length : - argument > length ? - length : - argument; - for ( ; --i >= 0; ) { - matchIndexes.push( i ); - } - return matchIndexes; - } ), - - "gt": createPositionalPseudo( function( matchIndexes, length, argument ) { - var i = argument < 0 ? argument + length : argument; - for ( ; ++i < length; ) { - matchIndexes.push( i ); - } - return matchIndexes; - } ) - } -}; - -Expr.pseudos[ "nth" ] = Expr.pseudos[ "eq" ]; - -// Add button/input type pseudos -for ( i in { radio: true, checkbox: true, file: true, password: true, image: true } ) { - Expr.pseudos[ i ] = createInputPseudo( i ); -} -for ( i in { submit: true, reset: true } ) { - Expr.pseudos[ i ] = createButtonPseudo( i ); -} - -// Easy API for creating new setFilters -function setFilters() {} -setFilters.prototype = Expr.filters = Expr.pseudos; -Expr.setFilters = new setFilters(); - -tokenize = Sizzle.tokenize = function( selector, parseOnly ) { - var matched, match, tokens, type, - soFar, groups, preFilters, - cached = tokenCache[ selector + " " ]; - - if ( cached ) { - return parseOnly ? 0 : cached.slice( 0 ); - } - - soFar = selector; - groups = []; - preFilters = Expr.preFilter; - - while ( soFar ) { - - // Comma and first run - if ( !matched || ( match = rcomma.exec( soFar ) ) ) { - if ( match ) { - - // Don't consume trailing commas as valid - soFar = soFar.slice( match[ 0 ].length ) || soFar; - } - groups.push( ( tokens = [] ) ); - } - - matched = false; - - // Combinators - if ( ( match = rcombinators.exec( soFar ) ) ) { - matched = match.shift(); - tokens.push( { - value: matched, - - // Cast descendant combinators to space - type: match[ 0 ].replace( rtrim, " " ) - } ); - soFar = soFar.slice( matched.length ); - } - - // Filters - for ( type in Expr.filter ) { - if ( ( match = matchExpr[ type ].exec( soFar ) ) && ( !preFilters[ type ] || - ( match = preFilters[ type ]( match ) ) ) ) { - matched = match.shift(); - tokens.push( { - value: matched, - type: type, - matches: match - } ); - soFar = soFar.slice( matched.length ); - } - } - - if ( !matched ) { - break; - } - } - - // Return the length of the invalid excess - // if we're just parsing - // Otherwise, throw an error or return tokens - return parseOnly ? - soFar.length : - soFar ? - Sizzle.error( selector ) : - - // Cache the tokens - tokenCache( selector, groups ).slice( 0 ); -}; - -function toSelector( tokens ) { - var i = 0, - len = tokens.length, - selector = ""; - for ( ; i < len; i++ ) { - selector += tokens[ i ].value; - } - return selector; -} - -function addCombinator( matcher, combinator, base ) { - var dir = combinator.dir, - skip = combinator.next, - key = skip || dir, - checkNonElements = base && key === "parentNode", - doneName = done++; - - return combinator.first ? - - // Check against closest ancestor/preceding element - function( elem, context, xml ) { - while ( ( elem = elem[ dir ] ) ) { - if ( elem.nodeType === 1 || checkNonElements ) { - return matcher( elem, context, xml ); - } - } - return false; - } : - - // Check against all ancestor/preceding elements - function( elem, context, xml ) { - var oldCache, uniqueCache, outerCache, - newCache = [ dirruns, doneName ]; - - // We can't set arbitrary data on XML nodes, so they don't benefit from combinator caching - if ( xml ) { - while ( ( elem = elem[ dir ] ) ) { - if ( elem.nodeType === 1 || checkNonElements ) { - if ( matcher( elem, context, xml ) ) { - return true; - } - } - } - } else { - while ( ( elem = elem[ dir ] ) ) { - if ( elem.nodeType === 1 || checkNonElements ) { - outerCache = elem[ expando ] || ( elem[ expando ] = {} ); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ elem.uniqueID ] || - ( outerCache[ elem.uniqueID ] = {} ); - - if ( skip && skip === elem.nodeName.toLowerCase() ) { - elem = elem[ dir ] || elem; - } else if ( ( oldCache = uniqueCache[ key ] ) && - oldCache[ 0 ] === dirruns && oldCache[ 1 ] === doneName ) { - - // Assign to newCache so results back-propagate to previous elements - return ( newCache[ 2 ] = oldCache[ 2 ] ); - } else { - - // Reuse newcache so results back-propagate to previous elements - uniqueCache[ key ] = newCache; - - // A match means we're done; a fail means we have to keep checking - if ( ( newCache[ 2 ] = matcher( elem, context, xml ) ) ) { - return true; - } - } - } - } - } - return false; - }; -} - -function elementMatcher( matchers ) { - return matchers.length > 1 ? - function( elem, context, xml ) { - var i = matchers.length; - while ( i-- ) { - if ( !matchers[ i ]( elem, context, xml ) ) { - return false; - } - } - return true; - } : - matchers[ 0 ]; -} - -function multipleContexts( selector, contexts, results ) { - var i = 0, - len = contexts.length; - for ( ; i < len; i++ ) { - Sizzle( selector, contexts[ i ], results ); - } - return results; -} - -function condense( unmatched, map, filter, context, xml ) { - var elem, - newUnmatched = [], - i = 0, - len = unmatched.length, - mapped = map != null; - - for ( ; i < len; i++ ) { - if ( ( elem = unmatched[ i ] ) ) { - if ( !filter || filter( elem, context, xml ) ) { - newUnmatched.push( elem ); - if ( mapped ) { - map.push( i ); - } - } - } - } - - return newUnmatched; -} - -function setMatcher( preFilter, selector, matcher, postFilter, postFinder, postSelector ) { - if ( postFilter && !postFilter[ expando ] ) { - postFilter = setMatcher( postFilter ); - } - if ( postFinder && !postFinder[ expando ] ) { - postFinder = setMatcher( postFinder, postSelector ); - } - return markFunction( function( seed, results, context, xml ) { - var temp, i, elem, - preMap = [], - postMap = [], - preexisting = results.length, - - // Get initial elements from seed or context - elems = seed || multipleContexts( - selector || "*", - context.nodeType ? [ context ] : context, - [] - ), - - // Prefilter to get matcher input, preserving a map for seed-results synchronization - matcherIn = preFilter && ( seed || !selector ) ? - condense( elems, preMap, preFilter, context, xml ) : - elems, - - matcherOut = matcher ? - - // If we have a postFinder, or filtered seed, or non-seed postFilter or preexisting results, - postFinder || ( seed ? preFilter : preexisting || postFilter ) ? - - // ...intermediate processing is necessary - [] : - - // ...otherwise use results directly - results : - matcherIn; - - // Find primary matches - if ( matcher ) { - matcher( matcherIn, matcherOut, context, xml ); - } - - // Apply postFilter - if ( postFilter ) { - temp = condense( matcherOut, postMap ); - postFilter( temp, [], context, xml ); - - // Un-match failing elements by moving them back to matcherIn - i = temp.length; - while ( i-- ) { - if ( ( elem = temp[ i ] ) ) { - matcherOut[ postMap[ i ] ] = !( matcherIn[ postMap[ i ] ] = elem ); - } - } - } - - if ( seed ) { - if ( postFinder || preFilter ) { - if ( postFinder ) { - - // Get the final matcherOut by condensing this intermediate into postFinder contexts - temp = []; - i = matcherOut.length; - while ( i-- ) { - if ( ( elem = matcherOut[ i ] ) ) { - - // Restore matcherIn since elem is not yet a final match - temp.push( ( matcherIn[ i ] = elem ) ); - } - } - postFinder( null, ( matcherOut = [] ), temp, xml ); - } - - // Move matched elements from seed to results to keep them synchronized - i = matcherOut.length; - while ( i-- ) { - if ( ( elem = matcherOut[ i ] ) && - ( temp = postFinder ? indexOf( seed, elem ) : preMap[ i ] ) > -1 ) { - - seed[ temp ] = !( results[ temp ] = elem ); - } - } - } - - // Add elements to results, through postFinder if defined - } else { - matcherOut = condense( - matcherOut === results ? - matcherOut.splice( preexisting, matcherOut.length ) : - matcherOut - ); - if ( postFinder ) { - postFinder( null, results, matcherOut, xml ); - } else { - push.apply( results, matcherOut ); - } - } - } ); -} - -function matcherFromTokens( tokens ) { - var checkContext, matcher, j, - len = tokens.length, - leadingRelative = Expr.relative[ tokens[ 0 ].type ], - implicitRelative = leadingRelative || Expr.relative[ " " ], - i = leadingRelative ? 1 : 0, - - // The foundational matcher ensures that elements are reachable from top-level context(s) - matchContext = addCombinator( function( elem ) { - return elem === checkContext; - }, implicitRelative, true ), - matchAnyContext = addCombinator( function( elem ) { - return indexOf( checkContext, elem ) > -1; - }, implicitRelative, true ), - matchers = [ function( elem, context, xml ) { - var ret = ( !leadingRelative && ( xml || context !== outermostContext ) ) || ( - ( checkContext = context ).nodeType ? - matchContext( elem, context, xml ) : - matchAnyContext( elem, context, xml ) ); - - // Avoid hanging onto element (issue #299) - checkContext = null; - return ret; - } ]; - - for ( ; i < len; i++ ) { - if ( ( matcher = Expr.relative[ tokens[ i ].type ] ) ) { - matchers = [ addCombinator( elementMatcher( matchers ), matcher ) ]; - } else { - matcher = Expr.filter[ tokens[ i ].type ].apply( null, tokens[ i ].matches ); - - // Return special upon seeing a positional matcher - if ( matcher[ expando ] ) { - - // Find the next relative operator (if any) for proper handling - j = ++i; - for ( ; j < len; j++ ) { - if ( Expr.relative[ tokens[ j ].type ] ) { - break; - } - } - return setMatcher( - i > 1 && elementMatcher( matchers ), - i > 1 && toSelector( - - // If the preceding token was a descendant combinator, insert an implicit any-element `*` - tokens - .slice( 0, i - 1 ) - .concat( { value: tokens[ i - 2 ].type === " " ? "*" : "" } ) - ).replace( rtrim, "$1" ), - matcher, - i < j && matcherFromTokens( tokens.slice( i, j ) ), - j < len && matcherFromTokens( ( tokens = tokens.slice( j ) ) ), - j < len && toSelector( tokens ) - ); - } - matchers.push( matcher ); - } - } - - return elementMatcher( matchers ); -} - -function matcherFromGroupMatchers( elementMatchers, setMatchers ) { - var bySet = setMatchers.length > 0, - byElement = elementMatchers.length > 0, - superMatcher = function( seed, context, xml, results, outermost ) { - var elem, j, matcher, - matchedCount = 0, - i = "0", - unmatched = seed && [], - setMatched = [], - contextBackup = outermostContext, - - // We must always have either seed elements or outermost context - elems = seed || byElement && Expr.find[ "TAG" ]( "*", outermost ), - - // Use integer dirruns iff this is the outermost matcher - dirrunsUnique = ( dirruns += contextBackup == null ? 1 : Math.random() || 0.1 ), - len = elems.length; - - if ( outermost ) { - - // Support: IE 11+, Edge 17 - 18+ - // IE/Edge sometimes throw a "Permission denied" error when strict-comparing - // two documents; shallow comparisons work. - // eslint-disable-next-line eqeqeq - outermostContext = context == document || context || outermost; - } - - // Add elements passing elementMatchers directly to results - // Support: IE<9, Safari - // Tolerate NodeList properties (IE: "length"; Safari: ) matching elements by id - for ( ; i !== len && ( elem = elems[ i ] ) != null; i++ ) { - if ( byElement && elem ) { - j = 0; - - // Support: IE 11+, Edge 17 - 18+ - // IE/Edge sometimes throw a "Permission denied" error when strict-comparing - // two documents; shallow comparisons work. - // eslint-disable-next-line eqeqeq - if ( !context && elem.ownerDocument != document ) { - setDocument( elem ); - xml = !documentIsHTML; - } - while ( ( matcher = elementMatchers[ j++ ] ) ) { - if ( matcher( elem, context || document, xml ) ) { - results.push( elem ); - break; - } - } - if ( outermost ) { - dirruns = dirrunsUnique; - } - } - - // Track unmatched elements for set filters - if ( bySet ) { - - // They will have gone through all possible matchers - if ( ( elem = !matcher && elem ) ) { - matchedCount--; - } - - // Lengthen the array for every element, matched or not - if ( seed ) { - unmatched.push( elem ); - } - } - } - - // `i` is now the count of elements visited above, and adding it to `matchedCount` - // makes the latter nonnegative. - matchedCount += i; - - // Apply set filters to unmatched elements - // NOTE: This can be skipped if there are no unmatched elements (i.e., `matchedCount` - // equals `i`), unless we didn't visit _any_ elements in the above loop because we have - // no element matchers and no seed. - // Incrementing an initially-string "0" `i` allows `i` to remain a string only in that - // case, which will result in a "00" `matchedCount` that differs from `i` but is also - // numerically zero. - if ( bySet && i !== matchedCount ) { - j = 0; - while ( ( matcher = setMatchers[ j++ ] ) ) { - matcher( unmatched, setMatched, context, xml ); - } - - if ( seed ) { - - // Reintegrate element matches to eliminate the need for sorting - if ( matchedCount > 0 ) { - while ( i-- ) { - if ( !( unmatched[ i ] || setMatched[ i ] ) ) { - setMatched[ i ] = pop.call( results ); - } - } - } - - // Discard index placeholder values to get only actual matches - setMatched = condense( setMatched ); - } - - // Add matches to results - push.apply( results, setMatched ); - - // Seedless set matches succeeding multiple successful matchers stipulate sorting - if ( outermost && !seed && setMatched.length > 0 && - ( matchedCount + setMatchers.length ) > 1 ) { - - Sizzle.uniqueSort( results ); - } - } - - // Override manipulation of globals by nested matchers - if ( outermost ) { - dirruns = dirrunsUnique; - outermostContext = contextBackup; - } - - return unmatched; - }; - - return bySet ? - markFunction( superMatcher ) : - superMatcher; -} - -compile = Sizzle.compile = function( selector, match /* Internal Use Only */ ) { - var i, - setMatchers = [], - elementMatchers = [], - cached = compilerCache[ selector + " " ]; - - if ( !cached ) { - - // Generate a function of recursive functions that can be used to check each element - if ( !match ) { - match = tokenize( selector ); - } - i = match.length; - while ( i-- ) { - cached = matcherFromTokens( match[ i ] ); - if ( cached[ expando ] ) { - setMatchers.push( cached ); - } else { - elementMatchers.push( cached ); - } - } - - // Cache the compiled function - cached = compilerCache( - selector, - matcherFromGroupMatchers( elementMatchers, setMatchers ) - ); - - // Save selector and tokenization - cached.selector = selector; - } - return cached; -}; - -/** - * A low-level selection function that works with Sizzle's compiled - * selector functions - * @param {String|Function} selector A selector or a pre-compiled - * selector function built with Sizzle.compile - * @param {Element} context - * @param {Array} [results] - * @param {Array} [seed] A set of elements to match against - */ -select = Sizzle.select = function( selector, context, results, seed ) { - var i, tokens, token, type, find, - compiled = typeof selector === "function" && selector, - match = !seed && tokenize( ( selector = compiled.selector || selector ) ); - - results = results || []; - - // Try to minimize operations if there is only one selector in the list and no seed - // (the latter of which guarantees us context) - if ( match.length === 1 ) { - - // Reduce context if the leading compound selector is an ID - tokens = match[ 0 ] = match[ 0 ].slice( 0 ); - if ( tokens.length > 2 && ( token = tokens[ 0 ] ).type === "ID" && - context.nodeType === 9 && documentIsHTML && Expr.relative[ tokens[ 1 ].type ] ) { - - context = ( Expr.find[ "ID" ]( token.matches[ 0 ] - .replace( runescape, funescape ), context ) || [] )[ 0 ]; - if ( !context ) { - return results; - - // Precompiled matchers will still verify ancestry, so step up a level - } else if ( compiled ) { - context = context.parentNode; - } - - selector = selector.slice( tokens.shift().value.length ); - } - - // Fetch a seed set for right-to-left matching - i = matchExpr[ "needsContext" ].test( selector ) ? 0 : tokens.length; - while ( i-- ) { - token = tokens[ i ]; - - // Abort if we hit a combinator - if ( Expr.relative[ ( type = token.type ) ] ) { - break; - } - if ( ( find = Expr.find[ type ] ) ) { - - // Search, expanding context for leading sibling combinators - if ( ( seed = find( - token.matches[ 0 ].replace( runescape, funescape ), - rsibling.test( tokens[ 0 ].type ) && testContext( context.parentNode ) || - context - ) ) ) { - - // If seed is empty or no tokens remain, we can return early - tokens.splice( i, 1 ); - selector = seed.length && toSelector( tokens ); - if ( !selector ) { - push.apply( results, seed ); - return results; - } - - break; - } - } - } - } - - // Compile and execute a filtering function if one is not provided - // Provide `match` to avoid retokenization if we modified the selector above - ( compiled || compile( selector, match ) )( - seed, - context, - !documentIsHTML, - results, - !context || rsibling.test( selector ) && testContext( context.parentNode ) || context - ); - return results; -}; - -// One-time assignments - -// Sort stability -support.sortStable = expando.split( "" ).sort( sortOrder ).join( "" ) === expando; - -// Support: Chrome 14-35+ -// Always assume duplicates if they aren't passed to the comparison function -support.detectDuplicates = !!hasDuplicate; - -// Initialize against the default document -setDocument(); - -// Support: Webkit<537.32 - Safari 6.0.3/Chrome 25 (fixed in Chrome 27) -// Detached nodes confoundingly follow *each other* -support.sortDetached = assert( function( el ) { - - // Should return 1, but returns 4 (following) - return el.compareDocumentPosition( document.createElement( "fieldset" ) ) & 1; -} ); - -// Support: IE<8 -// Prevent attribute/property "interpolation" -// https://msdn.microsoft.com/en-us/library/ms536429%28VS.85%29.aspx -if ( !assert( function( el ) { - el.innerHTML = ""; - return el.firstChild.getAttribute( "href" ) === "#"; -} ) ) { - addHandle( "type|href|height|width", function( elem, name, isXML ) { - if ( !isXML ) { - return elem.getAttribute( name, name.toLowerCase() === "type" ? 1 : 2 ); - } - } ); -} - -// Support: IE<9 -// Use defaultValue in place of getAttribute("value") -if ( !support.attributes || !assert( function( el ) { - el.innerHTML = ""; - el.firstChild.setAttribute( "value", "" ); - return el.firstChild.getAttribute( "value" ) === ""; -} ) ) { - addHandle( "value", function( elem, _name, isXML ) { - if ( !isXML && elem.nodeName.toLowerCase() === "input" ) { - return elem.defaultValue; - } - } ); -} - -// Support: IE<9 -// Use getAttributeNode to fetch booleans when getAttribute lies -if ( !assert( function( el ) { - return el.getAttribute( "disabled" ) == null; -} ) ) { - addHandle( booleans, function( elem, name, isXML ) { - var val; - if ( !isXML ) { - return elem[ name ] === true ? name.toLowerCase() : - ( val = elem.getAttributeNode( name ) ) && val.specified ? - val.value : - null; - } - } ); -} - -return Sizzle; - -} )( window ); - - - -jQuery.find = Sizzle; -jQuery.expr = Sizzle.selectors; - -// Deprecated -jQuery.expr[ ":" ] = jQuery.expr.pseudos; -jQuery.uniqueSort = jQuery.unique = Sizzle.uniqueSort; -jQuery.text = Sizzle.getText; -jQuery.isXMLDoc = Sizzle.isXML; -jQuery.contains = Sizzle.contains; -jQuery.escapeSelector = Sizzle.escape; - - - - -var dir = function( elem, dir, until ) { - var matched = [], - truncate = until !== undefined; - - while ( ( elem = elem[ dir ] ) && elem.nodeType !== 9 ) { - if ( elem.nodeType === 1 ) { - if ( truncate && jQuery( elem ).is( until ) ) { - break; - } - matched.push( elem ); - } - } - return matched; -}; - - -var siblings = function( n, elem ) { - var matched = []; - - for ( ; n; n = n.nextSibling ) { - if ( n.nodeType === 1 && n !== elem ) { - matched.push( n ); - } - } - - return matched; -}; - - -var rneedsContext = jQuery.expr.match.needsContext; - - - -function nodeName( elem, name ) { - - return elem.nodeName && elem.nodeName.toLowerCase() === name.toLowerCase(); - -}; -var rsingleTag = ( /^<([a-z][^\/\0>:\x20\t\r\n\f]*)[\x20\t\r\n\f]*\/?>(?:<\/\1>|)$/i ); - - - -// Implement the identical functionality for filter and not -function winnow( elements, qualifier, not ) { - if ( isFunction( qualifier ) ) { - return jQuery.grep( elements, function( elem, i ) { - return !!qualifier.call( elem, i, elem ) !== not; - } ); - } - - // Single element - if ( qualifier.nodeType ) { - return jQuery.grep( elements, function( elem ) { - return ( elem === qualifier ) !== not; - } ); - } - - // Arraylike of elements (jQuery, arguments, Array) - if ( typeof qualifier !== "string" ) { - return jQuery.grep( elements, function( elem ) { - return ( indexOf.call( qualifier, elem ) > -1 ) !== not; - } ); - } - - // Filtered directly for both simple and complex selectors - return jQuery.filter( qualifier, elements, not ); -} - -jQuery.filter = function( expr, elems, not ) { - var elem = elems[ 0 ]; - - if ( not ) { - expr = ":not(" + expr + ")"; - } - - if ( elems.length === 1 && elem.nodeType === 1 ) { - return jQuery.find.matchesSelector( elem, expr ) ? [ elem ] : []; - } - - return jQuery.find.matches( expr, jQuery.grep( elems, function( elem ) { - return elem.nodeType === 1; - } ) ); -}; - -jQuery.fn.extend( { - find: function( selector ) { - var i, ret, - len = this.length, - self = this; - - if ( typeof selector !== "string" ) { - return this.pushStack( jQuery( selector ).filter( function() { - for ( i = 0; i < len; i++ ) { - if ( jQuery.contains( self[ i ], this ) ) { - return true; - } - } - } ) ); - } - - ret = this.pushStack( [] ); - - for ( i = 0; i < len; i++ ) { - jQuery.find( selector, self[ i ], ret ); - } - - return len > 1 ? jQuery.uniqueSort( ret ) : ret; - }, - filter: function( selector ) { - return this.pushStack( winnow( this, selector || [], false ) ); - }, - not: function( selector ) { - return this.pushStack( winnow( this, selector || [], true ) ); - }, - is: function( selector ) { - return !!winnow( - this, - - // If this is a positional/relative selector, check membership in the returned set - // so $("p:first").is("p:last") won't return true for a doc with two "p". - typeof selector === "string" && rneedsContext.test( selector ) ? - jQuery( selector ) : - selector || [], - false - ).length; - } -} ); - - -// Initialize a jQuery object - - -// A central reference to the root jQuery(document) -var rootjQuery, - - // A simple way to check for HTML strings - // Prioritize #id over to avoid XSS via location.hash (#9521) - // Strict HTML recognition (#11290: must start with <) - // Shortcut simple #id case for speed - rquickExpr = /^(?:\s*(<[\w\W]+>)[^>]*|#([\w-]+))$/, - - init = jQuery.fn.init = function( selector, context, root ) { - var match, elem; - - // HANDLE: $(""), $(null), $(undefined), $(false) - if ( !selector ) { - return this; - } - - // Method init() accepts an alternate rootjQuery - // so migrate can support jQuery.sub (gh-2101) - root = root || rootjQuery; - - // Handle HTML strings - if ( typeof selector === "string" ) { - if ( selector[ 0 ] === "<" && - selector[ selector.length - 1 ] === ">" && - selector.length >= 3 ) { - - // Assume that strings that start and end with <> are HTML and skip the regex check - match = [ null, selector, null ]; - - } else { - match = rquickExpr.exec( selector ); - } - - // Match html or make sure no context is specified for #id - if ( match && ( match[ 1 ] || !context ) ) { - - // HANDLE: $(html) -> $(array) - if ( match[ 1 ] ) { - context = context instanceof jQuery ? context[ 0 ] : context; - - // Option to run scripts is true for back-compat - // Intentionally let the error be thrown if parseHTML is not present - jQuery.merge( this, jQuery.parseHTML( - match[ 1 ], - context && context.nodeType ? context.ownerDocument || context : document, - true - ) ); - - // HANDLE: $(html, props) - if ( rsingleTag.test( match[ 1 ] ) && jQuery.isPlainObject( context ) ) { - for ( match in context ) { - - // Properties of context are called as methods if possible - if ( isFunction( this[ match ] ) ) { - this[ match ]( context[ match ] ); - - // ...and otherwise set as attributes - } else { - this.attr( match, context[ match ] ); - } - } - } - - return this; - - // HANDLE: $(#id) - } else { - elem = document.getElementById( match[ 2 ] ); - - if ( elem ) { - - // Inject the element directly into the jQuery object - this[ 0 ] = elem; - this.length = 1; - } - return this; - } - - // HANDLE: $(expr, $(...)) - } else if ( !context || context.jquery ) { - return ( context || root ).find( selector ); - - // HANDLE: $(expr, context) - // (which is just equivalent to: $(context).find(expr) - } else { - return this.constructor( context ).find( selector ); - } - - // HANDLE: $(DOMElement) - } else if ( selector.nodeType ) { - this[ 0 ] = selector; - this.length = 1; - return this; - - // HANDLE: $(function) - // Shortcut for document ready - } else if ( isFunction( selector ) ) { - return root.ready !== undefined ? - root.ready( selector ) : - - // Execute immediately if ready is not present - selector( jQuery ); - } - - return jQuery.makeArray( selector, this ); - }; - -// Give the init function the jQuery prototype for later instantiation -init.prototype = jQuery.fn; - -// Initialize central reference -rootjQuery = jQuery( document ); - - -var rparentsprev = /^(?:parents|prev(?:Until|All))/, - - // Methods guaranteed to produce a unique set when starting from a unique set - guaranteedUnique = { - children: true, - contents: true, - next: true, - prev: true - }; - -jQuery.fn.extend( { - has: function( target ) { - var targets = jQuery( target, this ), - l = targets.length; - - return this.filter( function() { - var i = 0; - for ( ; i < l; i++ ) { - if ( jQuery.contains( this, targets[ i ] ) ) { - return true; - } - } - } ); - }, - - closest: function( selectors, context ) { - var cur, - i = 0, - l = this.length, - matched = [], - targets = typeof selectors !== "string" && jQuery( selectors ); - - // Positional selectors never match, since there's no _selection_ context - if ( !rneedsContext.test( selectors ) ) { - for ( ; i < l; i++ ) { - for ( cur = this[ i ]; cur && cur !== context; cur = cur.parentNode ) { - - // Always skip document fragments - if ( cur.nodeType < 11 && ( targets ? - targets.index( cur ) > -1 : - - // Don't pass non-elements to Sizzle - cur.nodeType === 1 && - jQuery.find.matchesSelector( cur, selectors ) ) ) { - - matched.push( cur ); - break; - } - } - } - } - - return this.pushStack( matched.length > 1 ? jQuery.uniqueSort( matched ) : matched ); - }, - - // Determine the position of an element within the set - index: function( elem ) { - - // No argument, return index in parent - if ( !elem ) { - return ( this[ 0 ] && this[ 0 ].parentNode ) ? this.first().prevAll().length : -1; - } - - // Index in selector - if ( typeof elem === "string" ) { - return indexOf.call( jQuery( elem ), this[ 0 ] ); - } - - // Locate the position of the desired element - return indexOf.call( this, - - // If it receives a jQuery object, the first element is used - elem.jquery ? elem[ 0 ] : elem - ); - }, - - add: function( selector, context ) { - return this.pushStack( - jQuery.uniqueSort( - jQuery.merge( this.get(), jQuery( selector, context ) ) - ) - ); - }, - - addBack: function( selector ) { - return this.add( selector == null ? - this.prevObject : this.prevObject.filter( selector ) - ); - } -} ); - -function sibling( cur, dir ) { - while ( ( cur = cur[ dir ] ) && cur.nodeType !== 1 ) {} - return cur; -} - -jQuery.each( { - parent: function( elem ) { - var parent = elem.parentNode; - return parent && parent.nodeType !== 11 ? parent : null; - }, - parents: function( elem ) { - return dir( elem, "parentNode" ); - }, - parentsUntil: function( elem, _i, until ) { - return dir( elem, "parentNode", until ); - }, - next: function( elem ) { - return sibling( elem, "nextSibling" ); - }, - prev: function( elem ) { - return sibling( elem, "previousSibling" ); - }, - nextAll: function( elem ) { - return dir( elem, "nextSibling" ); - }, - prevAll: function( elem ) { - return dir( elem, "previousSibling" ); - }, - nextUntil: function( elem, _i, until ) { - return dir( elem, "nextSibling", until ); - }, - prevUntil: function( elem, _i, until ) { - return dir( elem, "previousSibling", until ); - }, - siblings: function( elem ) { - return siblings( ( elem.parentNode || {} ).firstChild, elem ); - }, - children: function( elem ) { - return siblings( elem.firstChild ); - }, - contents: function( elem ) { - if ( elem.contentDocument != null && - - // Support: IE 11+ - // elements with no `data` attribute has an object - // `contentDocument` with a `null` prototype. - getProto( elem.contentDocument ) ) { - - return elem.contentDocument; - } - - // Support: IE 9 - 11 only, iOS 7 only, Android Browser <=4.3 only - // Treat the template element as a regular one in browsers that - // don't support it. - if ( nodeName( elem, "template" ) ) { - elem = elem.content || elem; - } - - return jQuery.merge( [], elem.childNodes ); - } -}, function( name, fn ) { - jQuery.fn[ name ] = function( until, selector ) { - var matched = jQuery.map( this, fn, until ); - - if ( name.slice( -5 ) !== "Until" ) { - selector = until; - } - - if ( selector && typeof selector === "string" ) { - matched = jQuery.filter( selector, matched ); - } - - if ( this.length > 1 ) { - - // Remove duplicates - if ( !guaranteedUnique[ name ] ) { - jQuery.uniqueSort( matched ); - } - - // Reverse order for parents* and prev-derivatives - if ( rparentsprev.test( name ) ) { - matched.reverse(); - } - } - - return this.pushStack( matched ); - }; -} ); -var rnothtmlwhite = ( /[^\x20\t\r\n\f]+/g ); - - - -// Convert String-formatted options into Object-formatted ones -function createOptions( options ) { - var object = {}; - jQuery.each( options.match( rnothtmlwhite ) || [], function( _, flag ) { - object[ flag ] = true; - } ); - return object; -} - -/* - * Create a callback list using the following parameters: - * - * options: an optional list of space-separated options that will change how - * the callback list behaves or a more traditional option object - * - * By default a callback list will act like an event callback list and can be - * "fired" multiple times. - * - * Possible options: - * - * once: will ensure the callback list can only be fired once (like a Deferred) - * - * memory: will keep track of previous values and will call any callback added - * after the list has been fired right away with the latest "memorized" - * values (like a Deferred) - * - * unique: will ensure a callback can only be added once (no duplicate in the list) - * - * stopOnFalse: interrupt callings when a callback returns false - * - */ -jQuery.Callbacks = function( options ) { - - // Convert options from String-formatted to Object-formatted if needed - // (we check in cache first) - options = typeof options === "string" ? - createOptions( options ) : - jQuery.extend( {}, options ); - - var // Flag to know if list is currently firing - firing, - - // Last fire value for non-forgettable lists - memory, - - // Flag to know if list was already fired - fired, - - // Flag to prevent firing - locked, - - // Actual callback list - list = [], - - // Queue of execution data for repeatable lists - queue = [], - - // Index of currently firing callback (modified by add/remove as needed) - firingIndex = -1, - - // Fire callbacks - fire = function() { - - // Enforce single-firing - locked = locked || options.once; - - // Execute callbacks for all pending executions, - // respecting firingIndex overrides and runtime changes - fired = firing = true; - for ( ; queue.length; firingIndex = -1 ) { - memory = queue.shift(); - while ( ++firingIndex < list.length ) { - - // Run callback and check for early termination - if ( list[ firingIndex ].apply( memory[ 0 ], memory[ 1 ] ) === false && - options.stopOnFalse ) { - - // Jump to end and forget the data so .add doesn't re-fire - firingIndex = list.length; - memory = false; - } - } - } - - // Forget the data if we're done with it - if ( !options.memory ) { - memory = false; - } - - firing = false; - - // Clean up if we're done firing for good - if ( locked ) { - - // Keep an empty list if we have data for future add calls - if ( memory ) { - list = []; - - // Otherwise, this object is spent - } else { - list = ""; - } - } - }, - - // Actual Callbacks object - self = { - - // Add a callback or a collection of callbacks to the list - add: function() { - if ( list ) { - - // If we have memory from a past run, we should fire after adding - if ( memory && !firing ) { - firingIndex = list.length - 1; - queue.push( memory ); - } - - ( function add( args ) { - jQuery.each( args, function( _, arg ) { - if ( isFunction( arg ) ) { - if ( !options.unique || !self.has( arg ) ) { - list.push( arg ); - } - } else if ( arg && arg.length && toType( arg ) !== "string" ) { - - // Inspect recursively - add( arg ); - } - } ); - } )( arguments ); - - if ( memory && !firing ) { - fire(); - } - } - return this; - }, - - // Remove a callback from the list - remove: function() { - jQuery.each( arguments, function( _, arg ) { - var index; - while ( ( index = jQuery.inArray( arg, list, index ) ) > -1 ) { - list.splice( index, 1 ); - - // Handle firing indexes - if ( index <= firingIndex ) { - firingIndex--; - } - } - } ); - return this; - }, - - // Check if a given callback is in the list. - // If no argument is given, return whether or not list has callbacks attached. - has: function( fn ) { - return fn ? - jQuery.inArray( fn, list ) > -1 : - list.length > 0; - }, - - // Remove all callbacks from the list - empty: function() { - if ( list ) { - list = []; - } - return this; - }, - - // Disable .fire and .add - // Abort any current/pending executions - // Clear all callbacks and values - disable: function() { - locked = queue = []; - list = memory = ""; - return this; - }, - disabled: function() { - return !list; - }, - - // Disable .fire - // Also disable .add unless we have memory (since it would have no effect) - // Abort any pending executions - lock: function() { - locked = queue = []; - if ( !memory && !firing ) { - list = memory = ""; - } - return this; - }, - locked: function() { - return !!locked; - }, - - // Call all callbacks with the given context and arguments - fireWith: function( context, args ) { - if ( !locked ) { - args = args || []; - args = [ context, args.slice ? args.slice() : args ]; - queue.push( args ); - if ( !firing ) { - fire(); - } - } - return this; - }, - - // Call all the callbacks with the given arguments - fire: function() { - self.fireWith( this, arguments ); - return this; - }, - - // To know if the callbacks have already been called at least once - fired: function() { - return !!fired; - } - }; - - return self; -}; - - -function Identity( v ) { - return v; -} -function Thrower( ex ) { - throw ex; -} - -function adoptValue( value, resolve, reject, noValue ) { - var method; - - try { - - // Check for promise aspect first to privilege synchronous behavior - if ( value && isFunction( ( method = value.promise ) ) ) { - method.call( value ).done( resolve ).fail( reject ); - - // Other thenables - } else if ( value && isFunction( ( method = value.then ) ) ) { - method.call( value, resolve, reject ); - - // Other non-thenables - } else { - - // Control `resolve` arguments by letting Array#slice cast boolean `noValue` to integer: - // * false: [ value ].slice( 0 ) => resolve( value ) - // * true: [ value ].slice( 1 ) => resolve() - resolve.apply( undefined, [ value ].slice( noValue ) ); - } - - // For Promises/A+, convert exceptions into rejections - // Since jQuery.when doesn't unwrap thenables, we can skip the extra checks appearing in - // Deferred#then to conditionally suppress rejection. - } catch ( value ) { - - // Support: Android 4.0 only - // Strict mode functions invoked without .call/.apply get global-object context - reject.apply( undefined, [ value ] ); - } -} - -jQuery.extend( { - - Deferred: function( func ) { - var tuples = [ - - // action, add listener, callbacks, - // ... .then handlers, argument index, [final state] - [ "notify", "progress", jQuery.Callbacks( "memory" ), - jQuery.Callbacks( "memory" ), 2 ], - [ "resolve", "done", jQuery.Callbacks( "once memory" ), - jQuery.Callbacks( "once memory" ), 0, "resolved" ], - [ "reject", "fail", jQuery.Callbacks( "once memory" ), - jQuery.Callbacks( "once memory" ), 1, "rejected" ] - ], - state = "pending", - promise = { - state: function() { - return state; - }, - always: function() { - deferred.done( arguments ).fail( arguments ); - return this; - }, - "catch": function( fn ) { - return promise.then( null, fn ); - }, - - // Keep pipe for back-compat - pipe: function( /* fnDone, fnFail, fnProgress */ ) { - var fns = arguments; - - return jQuery.Deferred( function( newDefer ) { - jQuery.each( tuples, function( _i, tuple ) { - - // Map tuples (progress, done, fail) to arguments (done, fail, progress) - var fn = isFunction( fns[ tuple[ 4 ] ] ) && fns[ tuple[ 4 ] ]; - - // deferred.progress(function() { bind to newDefer or newDefer.notify }) - // deferred.done(function() { bind to newDefer or newDefer.resolve }) - // deferred.fail(function() { bind to newDefer or newDefer.reject }) - deferred[ tuple[ 1 ] ]( function() { - var returned = fn && fn.apply( this, arguments ); - if ( returned && isFunction( returned.promise ) ) { - returned.promise() - .progress( newDefer.notify ) - .done( newDefer.resolve ) - .fail( newDefer.reject ); - } else { - newDefer[ tuple[ 0 ] + "With" ]( - this, - fn ? [ returned ] : arguments - ); - } - } ); - } ); - fns = null; - } ).promise(); - }, - then: function( onFulfilled, onRejected, onProgress ) { - var maxDepth = 0; - function resolve( depth, deferred, handler, special ) { - return function() { - var that = this, - args = arguments, - mightThrow = function() { - var returned, then; - - // Support: Promises/A+ section 2.3.3.3.3 - // https://promisesaplus.com/#point-59 - // Ignore double-resolution attempts - if ( depth < maxDepth ) { - return; - } - - returned = handler.apply( that, args ); - - // Support: Promises/A+ section 2.3.1 - // https://promisesaplus.com/#point-48 - if ( returned === deferred.promise() ) { - throw new TypeError( "Thenable self-resolution" ); - } - - // Support: Promises/A+ sections 2.3.3.1, 3.5 - // https://promisesaplus.com/#point-54 - // https://promisesaplus.com/#point-75 - // Retrieve `then` only once - then = returned && - - // Support: Promises/A+ section 2.3.4 - // https://promisesaplus.com/#point-64 - // Only check objects and functions for thenability - ( typeof returned === "object" || - typeof returned === "function" ) && - returned.then; - - // Handle a returned thenable - if ( isFunction( then ) ) { - - // Special processors (notify) just wait for resolution - if ( special ) { - then.call( - returned, - resolve( maxDepth, deferred, Identity, special ), - resolve( maxDepth, deferred, Thrower, special ) - ); - - // Normal processors (resolve) also hook into progress - } else { - - // ...and disregard older resolution values - maxDepth++; - - then.call( - returned, - resolve( maxDepth, deferred, Identity, special ), - resolve( maxDepth, deferred, Thrower, special ), - resolve( maxDepth, deferred, Identity, - deferred.notifyWith ) - ); - } - - // Handle all other returned values - } else { - - // Only substitute handlers pass on context - // and multiple values (non-spec behavior) - if ( handler !== Identity ) { - that = undefined; - args = [ returned ]; - } - - // Process the value(s) - // Default process is resolve - ( special || deferred.resolveWith )( that, args ); - } - }, - - // Only normal processors (resolve) catch and reject exceptions - process = special ? - mightThrow : - function() { - try { - mightThrow(); - } catch ( e ) { - - if ( jQuery.Deferred.exceptionHook ) { - jQuery.Deferred.exceptionHook( e, - process.stackTrace ); - } - - // Support: Promises/A+ section 2.3.3.3.4.1 - // https://promisesaplus.com/#point-61 - // Ignore post-resolution exceptions - if ( depth + 1 >= maxDepth ) { - - // Only substitute handlers pass on context - // and multiple values (non-spec behavior) - if ( handler !== Thrower ) { - that = undefined; - args = [ e ]; - } - - deferred.rejectWith( that, args ); - } - } - }; - - // Support: Promises/A+ section 2.3.3.3.1 - // https://promisesaplus.com/#point-57 - // Re-resolve promises immediately to dodge false rejection from - // subsequent errors - if ( depth ) { - process(); - } else { - - // Call an optional hook to record the stack, in case of exception - // since it's otherwise lost when execution goes async - if ( jQuery.Deferred.getStackHook ) { - process.stackTrace = jQuery.Deferred.getStackHook(); - } - window.setTimeout( process ); - } - }; - } - - return jQuery.Deferred( function( newDefer ) { - - // progress_handlers.add( ... ) - tuples[ 0 ][ 3 ].add( - resolve( - 0, - newDefer, - isFunction( onProgress ) ? - onProgress : - Identity, - newDefer.notifyWith - ) - ); - - // fulfilled_handlers.add( ... ) - tuples[ 1 ][ 3 ].add( - resolve( - 0, - newDefer, - isFunction( onFulfilled ) ? - onFulfilled : - Identity - ) - ); - - // rejected_handlers.add( ... ) - tuples[ 2 ][ 3 ].add( - resolve( - 0, - newDefer, - isFunction( onRejected ) ? - onRejected : - Thrower - ) - ); - } ).promise(); - }, - - // Get a promise for this deferred - // If obj is provided, the promise aspect is added to the object - promise: function( obj ) { - return obj != null ? jQuery.extend( obj, promise ) : promise; - } - }, - deferred = {}; - - // Add list-specific methods - jQuery.each( tuples, function( i, tuple ) { - var list = tuple[ 2 ], - stateString = tuple[ 5 ]; - - // promise.progress = list.add - // promise.done = list.add - // promise.fail = list.add - promise[ tuple[ 1 ] ] = list.add; - - // Handle state - if ( stateString ) { - list.add( - function() { - - // state = "resolved" (i.e., fulfilled) - // state = "rejected" - state = stateString; - }, - - // rejected_callbacks.disable - // fulfilled_callbacks.disable - tuples[ 3 - i ][ 2 ].disable, - - // rejected_handlers.disable - // fulfilled_handlers.disable - tuples[ 3 - i ][ 3 ].disable, - - // progress_callbacks.lock - tuples[ 0 ][ 2 ].lock, - - // progress_handlers.lock - tuples[ 0 ][ 3 ].lock - ); - } - - // progress_handlers.fire - // fulfilled_handlers.fire - // rejected_handlers.fire - list.add( tuple[ 3 ].fire ); - - // deferred.notify = function() { deferred.notifyWith(...) } - // deferred.resolve = function() { deferred.resolveWith(...) } - // deferred.reject = function() { deferred.rejectWith(...) } - deferred[ tuple[ 0 ] ] = function() { - deferred[ tuple[ 0 ] + "With" ]( this === deferred ? undefined : this, arguments ); - return this; - }; - - // deferred.notifyWith = list.fireWith - // deferred.resolveWith = list.fireWith - // deferred.rejectWith = list.fireWith - deferred[ tuple[ 0 ] + "With" ] = list.fireWith; - } ); - - // Make the deferred a promise - promise.promise( deferred ); - - // Call given func if any - if ( func ) { - func.call( deferred, deferred ); - } - - // All done! - return deferred; - }, - - // Deferred helper - when: function( singleValue ) { - var - - // count of uncompleted subordinates - remaining = arguments.length, - - // count of unprocessed arguments - i = remaining, - - // subordinate fulfillment data - resolveContexts = Array( i ), - resolveValues = slice.call( arguments ), - - // the master Deferred - master = jQuery.Deferred(), - - // subordinate callback factory - updateFunc = function( i ) { - return function( value ) { - resolveContexts[ i ] = this; - resolveValues[ i ] = arguments.length > 1 ? slice.call( arguments ) : value; - if ( !( --remaining ) ) { - master.resolveWith( resolveContexts, resolveValues ); - } - }; - }; - - // Single- and empty arguments are adopted like Promise.resolve - if ( remaining <= 1 ) { - adoptValue( singleValue, master.done( updateFunc( i ) ).resolve, master.reject, - !remaining ); - - // Use .then() to unwrap secondary thenables (cf. gh-3000) - if ( master.state() === "pending" || - isFunction( resolveValues[ i ] && resolveValues[ i ].then ) ) { - - return master.then(); - } - } - - // Multiple arguments are aggregated like Promise.all array elements - while ( i-- ) { - adoptValue( resolveValues[ i ], updateFunc( i ), master.reject ); - } - - return master.promise(); - } -} ); - - -// These usually indicate a programmer mistake during development, -// warn about them ASAP rather than swallowing them by default. -var rerrorNames = /^(Eval|Internal|Range|Reference|Syntax|Type|URI)Error$/; - -jQuery.Deferred.exceptionHook = function( error, stack ) { - - // Support: IE 8 - 9 only - // Console exists when dev tools are open, which can happen at any time - if ( window.console && window.console.warn && error && rerrorNames.test( error.name ) ) { - window.console.warn( "jQuery.Deferred exception: " + error.message, error.stack, stack ); - } -}; - - - - -jQuery.readyException = function( error ) { - window.setTimeout( function() { - throw error; - } ); -}; - - - - -// The deferred used on DOM ready -var readyList = jQuery.Deferred(); - -jQuery.fn.ready = function( fn ) { - - readyList - .then( fn ) - - // Wrap jQuery.readyException in a function so that the lookup - // happens at the time of error handling instead of callback - // registration. - .catch( function( error ) { - jQuery.readyException( error ); - } ); - - return this; -}; - -jQuery.extend( { - - // Is the DOM ready to be used? Set to true once it occurs. - isReady: false, - - // A counter to track how many items to wait for before - // the ready event fires. See #6781 - readyWait: 1, - - // Handle when the DOM is ready - ready: function( wait ) { - - // Abort if there are pending holds or we're already ready - if ( wait === true ? --jQuery.readyWait : jQuery.isReady ) { - return; - } - - // Remember that the DOM is ready - jQuery.isReady = true; - - // If a normal DOM Ready event fired, decrement, and wait if need be - if ( wait !== true && --jQuery.readyWait > 0 ) { - return; - } - - // If there are functions bound, to execute - readyList.resolveWith( document, [ jQuery ] ); - } -} ); - -jQuery.ready.then = readyList.then; - -// The ready event handler and self cleanup method -function completed() { - document.removeEventListener( "DOMContentLoaded", completed ); - window.removeEventListener( "load", completed ); - jQuery.ready(); -} - -// Catch cases where $(document).ready() is called -// after the browser event has already occurred. -// Support: IE <=9 - 10 only -// Older IE sometimes signals "interactive" too soon -if ( document.readyState === "complete" || - ( document.readyState !== "loading" && !document.documentElement.doScroll ) ) { - - // Handle it asynchronously to allow scripts the opportunity to delay ready - window.setTimeout( jQuery.ready ); - -} else { - - // Use the handy event callback - document.addEventListener( "DOMContentLoaded", completed ); - - // A fallback to window.onload, that will always work - window.addEventListener( "load", completed ); -} - - - - -// Multifunctional method to get and set values of a collection -// The value/s can optionally be executed if it's a function -var access = function( elems, fn, key, value, chainable, emptyGet, raw ) { - var i = 0, - len = elems.length, - bulk = key == null; - - // Sets many values - if ( toType( key ) === "object" ) { - chainable = true; - for ( i in key ) { - access( elems, fn, i, key[ i ], true, emptyGet, raw ); - } - - // Sets one value - } else if ( value !== undefined ) { - chainable = true; - - if ( !isFunction( value ) ) { - raw = true; - } - - if ( bulk ) { - - // Bulk operations run against the entire set - if ( raw ) { - fn.call( elems, value ); - fn = null; - - // ...except when executing function values - } else { - bulk = fn; - fn = function( elem, _key, value ) { - return bulk.call( jQuery( elem ), value ); - }; - } - } - - if ( fn ) { - for ( ; i < len; i++ ) { - fn( - elems[ i ], key, raw ? - value : - value.call( elems[ i ], i, fn( elems[ i ], key ) ) - ); - } - } - } - - if ( chainable ) { - return elems; - } - - // Gets - if ( bulk ) { - return fn.call( elems ); - } - - return len ? fn( elems[ 0 ], key ) : emptyGet; -}; - - -// Matches dashed string for camelizing -var rmsPrefix = /^-ms-/, - rdashAlpha = /-([a-z])/g; - -// Used by camelCase as callback to replace() -function fcamelCase( _all, letter ) { - return letter.toUpperCase(); -} - -// Convert dashed to camelCase; used by the css and data modules -// Support: IE <=9 - 11, Edge 12 - 15 -// Microsoft forgot to hump their vendor prefix (#9572) -function camelCase( string ) { - return string.replace( rmsPrefix, "ms-" ).replace( rdashAlpha, fcamelCase ); -} -var acceptData = function( owner ) { - - // Accepts only: - // - Node - // - Node.ELEMENT_NODE - // - Node.DOCUMENT_NODE - // - Object - // - Any - return owner.nodeType === 1 || owner.nodeType === 9 || !( +owner.nodeType ); -}; - - - - -function Data() { - this.expando = jQuery.expando + Data.uid++; -} - -Data.uid = 1; - -Data.prototype = { - - cache: function( owner ) { - - // Check if the owner object already has a cache - var value = owner[ this.expando ]; - - // If not, create one - if ( !value ) { - value = {}; - - // We can accept data for non-element nodes in modern browsers, - // but we should not, see #8335. - // Always return an empty object. - if ( acceptData( owner ) ) { - - // If it is a node unlikely to be stringify-ed or looped over - // use plain assignment - if ( owner.nodeType ) { - owner[ this.expando ] = value; - - // Otherwise secure it in a non-enumerable property - // configurable must be true to allow the property to be - // deleted when data is removed - } else { - Object.defineProperty( owner, this.expando, { - value: value, - configurable: true - } ); - } - } - } - - return value; - }, - set: function( owner, data, value ) { - var prop, - cache = this.cache( owner ); - - // Handle: [ owner, key, value ] args - // Always use camelCase key (gh-2257) - if ( typeof data === "string" ) { - cache[ camelCase( data ) ] = value; - - // Handle: [ owner, { properties } ] args - } else { - - // Copy the properties one-by-one to the cache object - for ( prop in data ) { - cache[ camelCase( prop ) ] = data[ prop ]; - } - } - return cache; - }, - get: function( owner, key ) { - return key === undefined ? - this.cache( owner ) : - - // Always use camelCase key (gh-2257) - owner[ this.expando ] && owner[ this.expando ][ camelCase( key ) ]; - }, - access: function( owner, key, value ) { - - // In cases where either: - // - // 1. No key was specified - // 2. A string key was specified, but no value provided - // - // Take the "read" path and allow the get method to determine - // which value to return, respectively either: - // - // 1. The entire cache object - // 2. The data stored at the key - // - if ( key === undefined || - ( ( key && typeof key === "string" ) && value === undefined ) ) { - - return this.get( owner, key ); - } - - // When the key is not a string, or both a key and value - // are specified, set or extend (existing objects) with either: - // - // 1. An object of properties - // 2. A key and value - // - this.set( owner, key, value ); - - // Since the "set" path can have two possible entry points - // return the expected data based on which path was taken[*] - return value !== undefined ? value : key; - }, - remove: function( owner, key ) { - var i, - cache = owner[ this.expando ]; - - if ( cache === undefined ) { - return; - } - - if ( key !== undefined ) { - - // Support array or space separated string of keys - if ( Array.isArray( key ) ) { - - // If key is an array of keys... - // We always set camelCase keys, so remove that. - key = key.map( camelCase ); - } else { - key = camelCase( key ); - - // If a key with the spaces exists, use it. - // Otherwise, create an array by matching non-whitespace - key = key in cache ? - [ key ] : - ( key.match( rnothtmlwhite ) || [] ); - } - - i = key.length; - - while ( i-- ) { - delete cache[ key[ i ] ]; - } - } - - // Remove the expando if there's no more data - if ( key === undefined || jQuery.isEmptyObject( cache ) ) { - - // Support: Chrome <=35 - 45 - // Webkit & Blink performance suffers when deleting properties - // from DOM nodes, so set to undefined instead - // https://bugs.chromium.org/p/chromium/issues/detail?id=378607 (bug restricted) - if ( owner.nodeType ) { - owner[ this.expando ] = undefined; - } else { - delete owner[ this.expando ]; - } - } - }, - hasData: function( owner ) { - var cache = owner[ this.expando ]; - return cache !== undefined && !jQuery.isEmptyObject( cache ); - } -}; -var dataPriv = new Data(); - -var dataUser = new Data(); - - - -// Implementation Summary -// -// 1. Enforce API surface and semantic compatibility with 1.9.x branch -// 2. Improve the module's maintainability by reducing the storage -// paths to a single mechanism. -// 3. Use the same single mechanism to support "private" and "user" data. -// 4. _Never_ expose "private" data to user code (TODO: Drop _data, _removeData) -// 5. Avoid exposing implementation details on user objects (eg. expando properties) -// 6. Provide a clear path for implementation upgrade to WeakMap in 2014 - -var rbrace = /^(?:\{[\w\W]*\}|\[[\w\W]*\])$/, - rmultiDash = /[A-Z]/g; - -function getData( data ) { - if ( data === "true" ) { - return true; - } - - if ( data === "false" ) { - return false; - } - - if ( data === "null" ) { - return null; - } - - // Only convert to a number if it doesn't change the string - if ( data === +data + "" ) { - return +data; - } - - if ( rbrace.test( data ) ) { - return JSON.parse( data ); - } - - return data; -} - -function dataAttr( elem, key, data ) { - var name; - - // If nothing was found internally, try to fetch any - // data from the HTML5 data-* attribute - if ( data === undefined && elem.nodeType === 1 ) { - name = "data-" + key.replace( rmultiDash, "-$&" ).toLowerCase(); - data = elem.getAttribute( name ); - - if ( typeof data === "string" ) { - try { - data = getData( data ); - } catch ( e ) {} - - // Make sure we set the data so it isn't changed later - dataUser.set( elem, key, data ); - } else { - data = undefined; - } - } - return data; -} - -jQuery.extend( { - hasData: function( elem ) { - return dataUser.hasData( elem ) || dataPriv.hasData( elem ); - }, - - data: function( elem, name, data ) { - return dataUser.access( elem, name, data ); - }, - - removeData: function( elem, name ) { - dataUser.remove( elem, name ); - }, - - // TODO: Now that all calls to _data and _removeData have been replaced - // with direct calls to dataPriv methods, these can be deprecated. - _data: function( elem, name, data ) { - return dataPriv.access( elem, name, data ); - }, - - _removeData: function( elem, name ) { - dataPriv.remove( elem, name ); - } -} ); - -jQuery.fn.extend( { - data: function( key, value ) { - var i, name, data, - elem = this[ 0 ], - attrs = elem && elem.attributes; - - // Gets all values - if ( key === undefined ) { - if ( this.length ) { - data = dataUser.get( elem ); - - if ( elem.nodeType === 1 && !dataPriv.get( elem, "hasDataAttrs" ) ) { - i = attrs.length; - while ( i-- ) { - - // Support: IE 11 only - // The attrs elements can be null (#14894) - if ( attrs[ i ] ) { - name = attrs[ i ].name; - if ( name.indexOf( "data-" ) === 0 ) { - name = camelCase( name.slice( 5 ) ); - dataAttr( elem, name, data[ name ] ); - } - } - } - dataPriv.set( elem, "hasDataAttrs", true ); - } - } - - return data; - } - - // Sets multiple values - if ( typeof key === "object" ) { - return this.each( function() { - dataUser.set( this, key ); - } ); - } - - return access( this, function( value ) { - var data; - - // The calling jQuery object (element matches) is not empty - // (and therefore has an element appears at this[ 0 ]) and the - // `value` parameter was not undefined. An empty jQuery object - // will result in `undefined` for elem = this[ 0 ] which will - // throw an exception if an attempt to read a data cache is made. - if ( elem && value === undefined ) { - - // Attempt to get data from the cache - // The key will always be camelCased in Data - data = dataUser.get( elem, key ); - if ( data !== undefined ) { - return data; - } - - // Attempt to "discover" the data in - // HTML5 custom data-* attrs - data = dataAttr( elem, key ); - if ( data !== undefined ) { - return data; - } - - // We tried really hard, but the data doesn't exist. - return; - } - - // Set the data... - this.each( function() { - - // We always store the camelCased key - dataUser.set( this, key, value ); - } ); - }, null, value, arguments.length > 1, null, true ); - }, - - removeData: function( key ) { - return this.each( function() { - dataUser.remove( this, key ); - } ); - } -} ); - - -jQuery.extend( { - queue: function( elem, type, data ) { - var queue; - - if ( elem ) { - type = ( type || "fx" ) + "queue"; - queue = dataPriv.get( elem, type ); - - // Speed up dequeue by getting out quickly if this is just a lookup - if ( data ) { - if ( !queue || Array.isArray( data ) ) { - queue = dataPriv.access( elem, type, jQuery.makeArray( data ) ); - } else { - queue.push( data ); - } - } - return queue || []; - } - }, - - dequeue: function( elem, type ) { - type = type || "fx"; - - var queue = jQuery.queue( elem, type ), - startLength = queue.length, - fn = queue.shift(), - hooks = jQuery._queueHooks( elem, type ), - next = function() { - jQuery.dequeue( elem, type ); - }; - - // If the fx queue is dequeued, always remove the progress sentinel - if ( fn === "inprogress" ) { - fn = queue.shift(); - startLength--; - } - - if ( fn ) { - - // Add a progress sentinel to prevent the fx queue from being - // automatically dequeued - if ( type === "fx" ) { - queue.unshift( "inprogress" ); - } - - // Clear up the last queue stop function - delete hooks.stop; - fn.call( elem, next, hooks ); - } - - if ( !startLength && hooks ) { - hooks.empty.fire(); - } - }, - - // Not public - generate a queueHooks object, or return the current one - _queueHooks: function( elem, type ) { - var key = type + "queueHooks"; - return dataPriv.get( elem, key ) || dataPriv.access( elem, key, { - empty: jQuery.Callbacks( "once memory" ).add( function() { - dataPriv.remove( elem, [ type + "queue", key ] ); - } ) - } ); - } -} ); - -jQuery.fn.extend( { - queue: function( type, data ) { - var setter = 2; - - if ( typeof type !== "string" ) { - data = type; - type = "fx"; - setter--; - } - - if ( arguments.length < setter ) { - return jQuery.queue( this[ 0 ], type ); - } - - return data === undefined ? - this : - this.each( function() { - var queue = jQuery.queue( this, type, data ); - - // Ensure a hooks for this queue - jQuery._queueHooks( this, type ); - - if ( type === "fx" && queue[ 0 ] !== "inprogress" ) { - jQuery.dequeue( this, type ); - } - } ); - }, - dequeue: function( type ) { - return this.each( function() { - jQuery.dequeue( this, type ); - } ); - }, - clearQueue: function( type ) { - return this.queue( type || "fx", [] ); - }, - - // Get a promise resolved when queues of a certain type - // are emptied (fx is the type by default) - promise: function( type, obj ) { - var tmp, - count = 1, - defer = jQuery.Deferred(), - elements = this, - i = this.length, - resolve = function() { - if ( !( --count ) ) { - defer.resolveWith( elements, [ elements ] ); - } - }; - - if ( typeof type !== "string" ) { - obj = type; - type = undefined; - } - type = type || "fx"; - - while ( i-- ) { - tmp = dataPriv.get( elements[ i ], type + "queueHooks" ); - if ( tmp && tmp.empty ) { - count++; - tmp.empty.add( resolve ); - } - } - resolve(); - return defer.promise( obj ); - } -} ); -var pnum = ( /[+-]?(?:\d*\.|)\d+(?:[eE][+-]?\d+|)/ ).source; - -var rcssNum = new RegExp( "^(?:([+-])=|)(" + pnum + ")([a-z%]*)$", "i" ); - - -var cssExpand = [ "Top", "Right", "Bottom", "Left" ]; - -var documentElement = document.documentElement; - - - - var isAttached = function( elem ) { - return jQuery.contains( elem.ownerDocument, elem ); - }, - composed = { composed: true }; - - // Support: IE 9 - 11+, Edge 12 - 18+, iOS 10.0 - 10.2 only - // Check attachment across shadow DOM boundaries when possible (gh-3504) - // Support: iOS 10.0-10.2 only - // Early iOS 10 versions support `attachShadow` but not `getRootNode`, - // leading to errors. We need to check for `getRootNode`. - if ( documentElement.getRootNode ) { - isAttached = function( elem ) { - return jQuery.contains( elem.ownerDocument, elem ) || - elem.getRootNode( composed ) === elem.ownerDocument; - }; - } -var isHiddenWithinTree = function( elem, el ) { - - // isHiddenWithinTree might be called from jQuery#filter function; - // in that case, element will be second argument - elem = el || elem; - - // Inline style trumps all - return elem.style.display === "none" || - elem.style.display === "" && - - // Otherwise, check computed style - // Support: Firefox <=43 - 45 - // Disconnected elements can have computed display: none, so first confirm that elem is - // in the document. - isAttached( elem ) && - - jQuery.css( elem, "display" ) === "none"; - }; - - - -function adjustCSS( elem, prop, valueParts, tween ) { - var adjusted, scale, - maxIterations = 20, - currentValue = tween ? - function() { - return tween.cur(); - } : - function() { - return jQuery.css( elem, prop, "" ); - }, - initial = currentValue(), - unit = valueParts && valueParts[ 3 ] || ( jQuery.cssNumber[ prop ] ? "" : "px" ), - - // Starting value computation is required for potential unit mismatches - initialInUnit = elem.nodeType && - ( jQuery.cssNumber[ prop ] || unit !== "px" && +initial ) && - rcssNum.exec( jQuery.css( elem, prop ) ); - - if ( initialInUnit && initialInUnit[ 3 ] !== unit ) { - - // Support: Firefox <=54 - // Halve the iteration target value to prevent interference from CSS upper bounds (gh-2144) - initial = initial / 2; - - // Trust units reported by jQuery.css - unit = unit || initialInUnit[ 3 ]; - - // Iteratively approximate from a nonzero starting point - initialInUnit = +initial || 1; - - while ( maxIterations-- ) { - - // Evaluate and update our best guess (doubling guesses that zero out). - // Finish if the scale equals or crosses 1 (making the old*new product non-positive). - jQuery.style( elem, prop, initialInUnit + unit ); - if ( ( 1 - scale ) * ( 1 - ( scale = currentValue() / initial || 0.5 ) ) <= 0 ) { - maxIterations = 0; - } - initialInUnit = initialInUnit / scale; - - } - - initialInUnit = initialInUnit * 2; - jQuery.style( elem, prop, initialInUnit + unit ); - - // Make sure we update the tween properties later on - valueParts = valueParts || []; - } - - if ( valueParts ) { - initialInUnit = +initialInUnit || +initial || 0; - - // Apply relative offset (+=/-=) if specified - adjusted = valueParts[ 1 ] ? - initialInUnit + ( valueParts[ 1 ] + 1 ) * valueParts[ 2 ] : - +valueParts[ 2 ]; - if ( tween ) { - tween.unit = unit; - tween.start = initialInUnit; - tween.end = adjusted; - } - } - return adjusted; -} - - -var defaultDisplayMap = {}; - -function getDefaultDisplay( elem ) { - var temp, - doc = elem.ownerDocument, - nodeName = elem.nodeName, - display = defaultDisplayMap[ nodeName ]; - - if ( display ) { - return display; - } - - temp = doc.body.appendChild( doc.createElement( nodeName ) ); - display = jQuery.css( temp, "display" ); - - temp.parentNode.removeChild( temp ); - - if ( display === "none" ) { - display = "block"; - } - defaultDisplayMap[ nodeName ] = display; - - return display; -} - -function showHide( elements, show ) { - var display, elem, - values = [], - index = 0, - length = elements.length; - - // Determine new display value for elements that need to change - for ( ; index < length; index++ ) { - elem = elements[ index ]; - if ( !elem.style ) { - continue; - } - - display = elem.style.display; - if ( show ) { - - // Since we force visibility upon cascade-hidden elements, an immediate (and slow) - // check is required in this first loop unless we have a nonempty display value (either - // inline or about-to-be-restored) - if ( display === "none" ) { - values[ index ] = dataPriv.get( elem, "display" ) || null; - if ( !values[ index ] ) { - elem.style.display = ""; - } - } - if ( elem.style.display === "" && isHiddenWithinTree( elem ) ) { - values[ index ] = getDefaultDisplay( elem ); - } - } else { - if ( display !== "none" ) { - values[ index ] = "none"; - - // Remember what we're overwriting - dataPriv.set( elem, "display", display ); - } - } - } - - // Set the display of the elements in a second loop to avoid constant reflow - for ( index = 0; index < length; index++ ) { - if ( values[ index ] != null ) { - elements[ index ].style.display = values[ index ]; - } - } - - return elements; -} - -jQuery.fn.extend( { - show: function() { - return showHide( this, true ); - }, - hide: function() { - return showHide( this ); - }, - toggle: function( state ) { - if ( typeof state === "boolean" ) { - return state ? this.show() : this.hide(); - } - - return this.each( function() { - if ( isHiddenWithinTree( this ) ) { - jQuery( this ).show(); - } else { - jQuery( this ).hide(); - } - } ); - } -} ); -var rcheckableType = ( /^(?:checkbox|radio)$/i ); - -var rtagName = ( /<([a-z][^\/\0>\x20\t\r\n\f]*)/i ); - -var rscriptType = ( /^$|^module$|\/(?:java|ecma)script/i ); - - - -( function() { - var fragment = document.createDocumentFragment(), - div = fragment.appendChild( document.createElement( "div" ) ), - input = document.createElement( "input" ); - - // Support: Android 4.0 - 4.3 only - // Check state lost if the name is set (#11217) - // Support: Windows Web Apps (WWA) - // `name` and `type` must use .setAttribute for WWA (#14901) - input.setAttribute( "type", "radio" ); - input.setAttribute( "checked", "checked" ); - input.setAttribute( "name", "t" ); - - div.appendChild( input ); - - // Support: Android <=4.1 only - // Older WebKit doesn't clone checked state correctly in fragments - support.checkClone = div.cloneNode( true ).cloneNode( true ).lastChild.checked; - - // Support: IE <=11 only - // Make sure textarea (and checkbox) defaultValue is properly cloned - div.innerHTML = ""; - support.noCloneChecked = !!div.cloneNode( true ).lastChild.defaultValue; - - // Support: IE <=9 only - // IE <=9 replaces "; - support.option = !!div.lastChild; -} )(); - - -// We have to close these tags to support XHTML (#13200) -var wrapMap = { - - // XHTML parsers do not magically insert elements in the - // same way that tag soup parsers do. So we cannot shorten - // this by omitting or other required elements. - thead: [ 1, "", "
    " ], - col: [ 2, "", "
    " ], - tr: [ 2, "", "
    " ], - td: [ 3, "", "
    " ], - - _default: [ 0, "", "" ] -}; - -wrapMap.tbody = wrapMap.tfoot = wrapMap.colgroup = wrapMap.caption = wrapMap.thead; -wrapMap.th = wrapMap.td; - -// Support: IE <=9 only -if ( !support.option ) { - wrapMap.optgroup = wrapMap.option = [ 1, "" ]; -} - - -function getAll( context, tag ) { - - // Support: IE <=9 - 11 only - // Use typeof to avoid zero-argument method invocation on host objects (#15151) - var ret; - - if ( typeof context.getElementsByTagName !== "undefined" ) { - ret = context.getElementsByTagName( tag || "*" ); - - } else if ( typeof context.querySelectorAll !== "undefined" ) { - ret = context.querySelectorAll( tag || "*" ); - - } else { - ret = []; - } - - if ( tag === undefined || tag && nodeName( context, tag ) ) { - return jQuery.merge( [ context ], ret ); - } - - return ret; -} - - -// Mark scripts as having already been evaluated -function setGlobalEval( elems, refElements ) { - var i = 0, - l = elems.length; - - for ( ; i < l; i++ ) { - dataPriv.set( - elems[ i ], - "globalEval", - !refElements || dataPriv.get( refElements[ i ], "globalEval" ) - ); - } -} - - -var rhtml = /<|&#?\w+;/; - -function buildFragment( elems, context, scripts, selection, ignored ) { - var elem, tmp, tag, wrap, attached, j, - fragment = context.createDocumentFragment(), - nodes = [], - i = 0, - l = elems.length; - - for ( ; i < l; i++ ) { - elem = elems[ i ]; - - if ( elem || elem === 0 ) { - - // Add nodes directly - if ( toType( elem ) === "object" ) { - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - jQuery.merge( nodes, elem.nodeType ? [ elem ] : elem ); - - // Convert non-html into a text node - } else if ( !rhtml.test( elem ) ) { - nodes.push( context.createTextNode( elem ) ); - - // Convert html into DOM nodes - } else { - tmp = tmp || fragment.appendChild( context.createElement( "div" ) ); - - // Deserialize a standard representation - tag = ( rtagName.exec( elem ) || [ "", "" ] )[ 1 ].toLowerCase(); - wrap = wrapMap[ tag ] || wrapMap._default; - tmp.innerHTML = wrap[ 1 ] + jQuery.htmlPrefilter( elem ) + wrap[ 2 ]; - - // Descend through wrappers to the right content - j = wrap[ 0 ]; - while ( j-- ) { - tmp = tmp.lastChild; - } - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - jQuery.merge( nodes, tmp.childNodes ); - - // Remember the top-level container - tmp = fragment.firstChild; - - // Ensure the created nodes are orphaned (#12392) - tmp.textContent = ""; - } - } - } - - // Remove wrapper from fragment - fragment.textContent = ""; - - i = 0; - while ( ( elem = nodes[ i++ ] ) ) { - - // Skip elements already in the context collection (trac-4087) - if ( selection && jQuery.inArray( elem, selection ) > -1 ) { - if ( ignored ) { - ignored.push( elem ); - } - continue; - } - - attached = isAttached( elem ); - - // Append to fragment - tmp = getAll( fragment.appendChild( elem ), "script" ); - - // Preserve script evaluation history - if ( attached ) { - setGlobalEval( tmp ); - } - - // Capture executables - if ( scripts ) { - j = 0; - while ( ( elem = tmp[ j++ ] ) ) { - if ( rscriptType.test( elem.type || "" ) ) { - scripts.push( elem ); - } - } - } - } - - return fragment; -} - - -var - rkeyEvent = /^key/, - rmouseEvent = /^(?:mouse|pointer|contextmenu|drag|drop)|click/, - rtypenamespace = /^([^.]*)(?:\.(.+)|)/; - -function returnTrue() { - return true; -} - -function returnFalse() { - return false; -} - -// Support: IE <=9 - 11+ -// focus() and blur() are asynchronous, except when they are no-op. -// So expect focus to be synchronous when the element is already active, -// and blur to be synchronous when the element is not already active. -// (focus and blur are always synchronous in other supported browsers, -// this just defines when we can count on it). -function expectSync( elem, type ) { - return ( elem === safeActiveElement() ) === ( type === "focus" ); -} - -// Support: IE <=9 only -// Accessing document.activeElement can throw unexpectedly -// https://bugs.jquery.com/ticket/13393 -function safeActiveElement() { - try { - return document.activeElement; - } catch ( err ) { } -} - -function on( elem, types, selector, data, fn, one ) { - var origFn, type; - - // Types can be a map of types/handlers - if ( typeof types === "object" ) { - - // ( types-Object, selector, data ) - if ( typeof selector !== "string" ) { - - // ( types-Object, data ) - data = data || selector; - selector = undefined; - } - for ( type in types ) { - on( elem, type, selector, data, types[ type ], one ); - } - return elem; - } - - if ( data == null && fn == null ) { - - // ( types, fn ) - fn = selector; - data = selector = undefined; - } else if ( fn == null ) { - if ( typeof selector === "string" ) { - - // ( types, selector, fn ) - fn = data; - data = undefined; - } else { - - // ( types, data, fn ) - fn = data; - data = selector; - selector = undefined; - } - } - if ( fn === false ) { - fn = returnFalse; - } else if ( !fn ) { - return elem; - } - - if ( one === 1 ) { - origFn = fn; - fn = function( event ) { - - // Can use an empty set, since event contains the info - jQuery().off( event ); - return origFn.apply( this, arguments ); - }; - - // Use same guid so caller can remove using origFn - fn.guid = origFn.guid || ( origFn.guid = jQuery.guid++ ); - } - return elem.each( function() { - jQuery.event.add( this, types, fn, data, selector ); - } ); -} - -/* - * Helper functions for managing events -- not part of the public interface. - * Props to Dean Edwards' addEvent library for many of the ideas. - */ -jQuery.event = { - - global: {}, - - add: function( elem, types, handler, data, selector ) { - - var handleObjIn, eventHandle, tmp, - events, t, handleObj, - special, handlers, type, namespaces, origType, - elemData = dataPriv.get( elem ); - - // Only attach events to objects that accept data - if ( !acceptData( elem ) ) { - return; - } - - // Caller can pass in an object of custom data in lieu of the handler - if ( handler.handler ) { - handleObjIn = handler; - handler = handleObjIn.handler; - selector = handleObjIn.selector; - } - - // Ensure that invalid selectors throw exceptions at attach time - // Evaluate against documentElement in case elem is a non-element node (e.g., document) - if ( selector ) { - jQuery.find.matchesSelector( documentElement, selector ); - } - - // Make sure that the handler has a unique ID, used to find/remove it later - if ( !handler.guid ) { - handler.guid = jQuery.guid++; - } - - // Init the element's event structure and main handler, if this is the first - if ( !( events = elemData.events ) ) { - events = elemData.events = Object.create( null ); - } - if ( !( eventHandle = elemData.handle ) ) { - eventHandle = elemData.handle = function( e ) { - - // Discard the second event of a jQuery.event.trigger() and - // when an event is called after a page has unloaded - return typeof jQuery !== "undefined" && jQuery.event.triggered !== e.type ? - jQuery.event.dispatch.apply( elem, arguments ) : undefined; - }; - } - - // Handle multiple events separated by a space - types = ( types || "" ).match( rnothtmlwhite ) || [ "" ]; - t = types.length; - while ( t-- ) { - tmp = rtypenamespace.exec( types[ t ] ) || []; - type = origType = tmp[ 1 ]; - namespaces = ( tmp[ 2 ] || "" ).split( "." ).sort(); - - // There *must* be a type, no attaching namespace-only handlers - if ( !type ) { - continue; - } - - // If event changes its type, use the special event handlers for the changed type - special = jQuery.event.special[ type ] || {}; - - // If selector defined, determine special event api type, otherwise given type - type = ( selector ? special.delegateType : special.bindType ) || type; - - // Update special based on newly reset type - special = jQuery.event.special[ type ] || {}; - - // handleObj is passed to all event handlers - handleObj = jQuery.extend( { - type: type, - origType: origType, - data: data, - handler: handler, - guid: handler.guid, - selector: selector, - needsContext: selector && jQuery.expr.match.needsContext.test( selector ), - namespace: namespaces.join( "." ) - }, handleObjIn ); - - // Init the event handler queue if we're the first - if ( !( handlers = events[ type ] ) ) { - handlers = events[ type ] = []; - handlers.delegateCount = 0; - - // Only use addEventListener if the special events handler returns false - if ( !special.setup || - special.setup.call( elem, data, namespaces, eventHandle ) === false ) { - - if ( elem.addEventListener ) { - elem.addEventListener( type, eventHandle ); - } - } - } - - if ( special.add ) { - special.add.call( elem, handleObj ); - - if ( !handleObj.handler.guid ) { - handleObj.handler.guid = handler.guid; - } - } - - // Add to the element's handler list, delegates in front - if ( selector ) { - handlers.splice( handlers.delegateCount++, 0, handleObj ); - } else { - handlers.push( handleObj ); - } - - // Keep track of which events have ever been used, for event optimization - jQuery.event.global[ type ] = true; - } - - }, - - // Detach an event or set of events from an element - remove: function( elem, types, handler, selector, mappedTypes ) { - - var j, origCount, tmp, - events, t, handleObj, - special, handlers, type, namespaces, origType, - elemData = dataPriv.hasData( elem ) && dataPriv.get( elem ); - - if ( !elemData || !( events = elemData.events ) ) { - return; - } - - // Once for each type.namespace in types; type may be omitted - types = ( types || "" ).match( rnothtmlwhite ) || [ "" ]; - t = types.length; - while ( t-- ) { - tmp = rtypenamespace.exec( types[ t ] ) || []; - type = origType = tmp[ 1 ]; - namespaces = ( tmp[ 2 ] || "" ).split( "." ).sort(); - - // Unbind all events (on this namespace, if provided) for the element - if ( !type ) { - for ( type in events ) { - jQuery.event.remove( elem, type + types[ t ], handler, selector, true ); - } - continue; - } - - special = jQuery.event.special[ type ] || {}; - type = ( selector ? special.delegateType : special.bindType ) || type; - handlers = events[ type ] || []; - tmp = tmp[ 2 ] && - new RegExp( "(^|\\.)" + namespaces.join( "\\.(?:.*\\.|)" ) + "(\\.|$)" ); - - // Remove matching events - origCount = j = handlers.length; - while ( j-- ) { - handleObj = handlers[ j ]; - - if ( ( mappedTypes || origType === handleObj.origType ) && - ( !handler || handler.guid === handleObj.guid ) && - ( !tmp || tmp.test( handleObj.namespace ) ) && - ( !selector || selector === handleObj.selector || - selector === "**" && handleObj.selector ) ) { - handlers.splice( j, 1 ); - - if ( handleObj.selector ) { - handlers.delegateCount--; - } - if ( special.remove ) { - special.remove.call( elem, handleObj ); - } - } - } - - // Remove generic event handler if we removed something and no more handlers exist - // (avoids potential for endless recursion during removal of special event handlers) - if ( origCount && !handlers.length ) { - if ( !special.teardown || - special.teardown.call( elem, namespaces, elemData.handle ) === false ) { - - jQuery.removeEvent( elem, type, elemData.handle ); - } - - delete events[ type ]; - } - } - - // Remove data and the expando if it's no longer used - if ( jQuery.isEmptyObject( events ) ) { - dataPriv.remove( elem, "handle events" ); - } - }, - - dispatch: function( nativeEvent ) { - - var i, j, ret, matched, handleObj, handlerQueue, - args = new Array( arguments.length ), - - // Make a writable jQuery.Event from the native event object - event = jQuery.event.fix( nativeEvent ), - - handlers = ( - dataPriv.get( this, "events" ) || Object.create( null ) - )[ event.type ] || [], - special = jQuery.event.special[ event.type ] || {}; - - // Use the fix-ed jQuery.Event rather than the (read-only) native event - args[ 0 ] = event; - - for ( i = 1; i < arguments.length; i++ ) { - args[ i ] = arguments[ i ]; - } - - event.delegateTarget = this; - - // Call the preDispatch hook for the mapped type, and let it bail if desired - if ( special.preDispatch && special.preDispatch.call( this, event ) === false ) { - return; - } - - // Determine handlers - handlerQueue = jQuery.event.handlers.call( this, event, handlers ); - - // Run delegates first; they may want to stop propagation beneath us - i = 0; - while ( ( matched = handlerQueue[ i++ ] ) && !event.isPropagationStopped() ) { - event.currentTarget = matched.elem; - - j = 0; - while ( ( handleObj = matched.handlers[ j++ ] ) && - !event.isImmediatePropagationStopped() ) { - - // If the event is namespaced, then each handler is only invoked if it is - // specially universal or its namespaces are a superset of the event's. - if ( !event.rnamespace || handleObj.namespace === false || - event.rnamespace.test( handleObj.namespace ) ) { - - event.handleObj = handleObj; - event.data = handleObj.data; - - ret = ( ( jQuery.event.special[ handleObj.origType ] || {} ).handle || - handleObj.handler ).apply( matched.elem, args ); - - if ( ret !== undefined ) { - if ( ( event.result = ret ) === false ) { - event.preventDefault(); - event.stopPropagation(); - } - } - } - } - } - - // Call the postDispatch hook for the mapped type - if ( special.postDispatch ) { - special.postDispatch.call( this, event ); - } - - return event.result; - }, - - handlers: function( event, handlers ) { - var i, handleObj, sel, matchedHandlers, matchedSelectors, - handlerQueue = [], - delegateCount = handlers.delegateCount, - cur = event.target; - - // Find delegate handlers - if ( delegateCount && - - // Support: IE <=9 - // Black-hole SVG instance trees (trac-13180) - cur.nodeType && - - // Support: Firefox <=42 - // Suppress spec-violating clicks indicating a non-primary pointer button (trac-3861) - // https://www.w3.org/TR/DOM-Level-3-Events/#event-type-click - // Support: IE 11 only - // ...but not arrow key "clicks" of radio inputs, which can have `button` -1 (gh-2343) - !( event.type === "click" && event.button >= 1 ) ) { - - for ( ; cur !== this; cur = cur.parentNode || this ) { - - // Don't check non-elements (#13208) - // Don't process clicks on disabled elements (#6911, #8165, #11382, #11764) - if ( cur.nodeType === 1 && !( event.type === "click" && cur.disabled === true ) ) { - matchedHandlers = []; - matchedSelectors = {}; - for ( i = 0; i < delegateCount; i++ ) { - handleObj = handlers[ i ]; - - // Don't conflict with Object.prototype properties (#13203) - sel = handleObj.selector + " "; - - if ( matchedSelectors[ sel ] === undefined ) { - matchedSelectors[ sel ] = handleObj.needsContext ? - jQuery( sel, this ).index( cur ) > -1 : - jQuery.find( sel, this, null, [ cur ] ).length; - } - if ( matchedSelectors[ sel ] ) { - matchedHandlers.push( handleObj ); - } - } - if ( matchedHandlers.length ) { - handlerQueue.push( { elem: cur, handlers: matchedHandlers } ); - } - } - } - } - - // Add the remaining (directly-bound) handlers - cur = this; - if ( delegateCount < handlers.length ) { - handlerQueue.push( { elem: cur, handlers: handlers.slice( delegateCount ) } ); - } - - return handlerQueue; - }, - - addProp: function( name, hook ) { - Object.defineProperty( jQuery.Event.prototype, name, { - enumerable: true, - configurable: true, - - get: isFunction( hook ) ? - function() { - if ( this.originalEvent ) { - return hook( this.originalEvent ); - } - } : - function() { - if ( this.originalEvent ) { - return this.originalEvent[ name ]; - } - }, - - set: function( value ) { - Object.defineProperty( this, name, { - enumerable: true, - configurable: true, - writable: true, - value: value - } ); - } - } ); - }, - - fix: function( originalEvent ) { - return originalEvent[ jQuery.expando ] ? - originalEvent : - new jQuery.Event( originalEvent ); - }, - - special: { - load: { - - // Prevent triggered image.load events from bubbling to window.load - noBubble: true - }, - click: { - - // Utilize native event to ensure correct state for checkable inputs - setup: function( data ) { - - // For mutual compressibility with _default, replace `this` access with a local var. - // `|| data` is dead code meant only to preserve the variable through minification. - var el = this || data; - - // Claim the first handler - if ( rcheckableType.test( el.type ) && - el.click && nodeName( el, "input" ) ) { - - // dataPriv.set( el, "click", ... ) - leverageNative( el, "click", returnTrue ); - } - - // Return false to allow normal processing in the caller - return false; - }, - trigger: function( data ) { - - // For mutual compressibility with _default, replace `this` access with a local var. - // `|| data` is dead code meant only to preserve the variable through minification. - var el = this || data; - - // Force setup before triggering a click - if ( rcheckableType.test( el.type ) && - el.click && nodeName( el, "input" ) ) { - - leverageNative( el, "click" ); - } - - // Return non-false to allow normal event-path propagation - return true; - }, - - // For cross-browser consistency, suppress native .click() on links - // Also prevent it if we're currently inside a leveraged native-event stack - _default: function( event ) { - var target = event.target; - return rcheckableType.test( target.type ) && - target.click && nodeName( target, "input" ) && - dataPriv.get( target, "click" ) || - nodeName( target, "a" ); - } - }, - - beforeunload: { - postDispatch: function( event ) { - - // Support: Firefox 20+ - // Firefox doesn't alert if the returnValue field is not set. - if ( event.result !== undefined && event.originalEvent ) { - event.originalEvent.returnValue = event.result; - } - } - } - } -}; - -// Ensure the presence of an event listener that handles manually-triggered -// synthetic events by interrupting progress until reinvoked in response to -// *native* events that it fires directly, ensuring that state changes have -// already occurred before other listeners are invoked. -function leverageNative( el, type, expectSync ) { - - // Missing expectSync indicates a trigger call, which must force setup through jQuery.event.add - if ( !expectSync ) { - if ( dataPriv.get( el, type ) === undefined ) { - jQuery.event.add( el, type, returnTrue ); - } - return; - } - - // Register the controller as a special universal handler for all event namespaces - dataPriv.set( el, type, false ); - jQuery.event.add( el, type, { - namespace: false, - handler: function( event ) { - var notAsync, result, - saved = dataPriv.get( this, type ); - - if ( ( event.isTrigger & 1 ) && this[ type ] ) { - - // Interrupt processing of the outer synthetic .trigger()ed event - // Saved data should be false in such cases, but might be a leftover capture object - // from an async native handler (gh-4350) - if ( !saved.length ) { - - // Store arguments for use when handling the inner native event - // There will always be at least one argument (an event object), so this array - // will not be confused with a leftover capture object. - saved = slice.call( arguments ); - dataPriv.set( this, type, saved ); - - // Trigger the native event and capture its result - // Support: IE <=9 - 11+ - // focus() and blur() are asynchronous - notAsync = expectSync( this, type ); - this[ type ](); - result = dataPriv.get( this, type ); - if ( saved !== result || notAsync ) { - dataPriv.set( this, type, false ); - } else { - result = {}; - } - if ( saved !== result ) { - - // Cancel the outer synthetic event - event.stopImmediatePropagation(); - event.preventDefault(); - return result.value; - } - - // If this is an inner synthetic event for an event with a bubbling surrogate - // (focus or blur), assume that the surrogate already propagated from triggering the - // native event and prevent that from happening again here. - // This technically gets the ordering wrong w.r.t. to `.trigger()` (in which the - // bubbling surrogate propagates *after* the non-bubbling base), but that seems - // less bad than duplication. - } else if ( ( jQuery.event.special[ type ] || {} ).delegateType ) { - event.stopPropagation(); - } - - // If this is a native event triggered above, everything is now in order - // Fire an inner synthetic event with the original arguments - } else if ( saved.length ) { - - // ...and capture the result - dataPriv.set( this, type, { - value: jQuery.event.trigger( - - // Support: IE <=9 - 11+ - // Extend with the prototype to reset the above stopImmediatePropagation() - jQuery.extend( saved[ 0 ], jQuery.Event.prototype ), - saved.slice( 1 ), - this - ) - } ); - - // Abort handling of the native event - event.stopImmediatePropagation(); - } - } - } ); -} - -jQuery.removeEvent = function( elem, type, handle ) { - - // This "if" is needed for plain objects - if ( elem.removeEventListener ) { - elem.removeEventListener( type, handle ); - } -}; - -jQuery.Event = function( src, props ) { - - // Allow instantiation without the 'new' keyword - if ( !( this instanceof jQuery.Event ) ) { - return new jQuery.Event( src, props ); - } - - // Event object - if ( src && src.type ) { - this.originalEvent = src; - this.type = src.type; - - // Events bubbling up the document may have been marked as prevented - // by a handler lower down the tree; reflect the correct value. - this.isDefaultPrevented = src.defaultPrevented || - src.defaultPrevented === undefined && - - // Support: Android <=2.3 only - src.returnValue === false ? - returnTrue : - returnFalse; - - // Create target properties - // Support: Safari <=6 - 7 only - // Target should not be a text node (#504, #13143) - this.target = ( src.target && src.target.nodeType === 3 ) ? - src.target.parentNode : - src.target; - - this.currentTarget = src.currentTarget; - this.relatedTarget = src.relatedTarget; - - // Event type - } else { - this.type = src; - } - - // Put explicitly provided properties onto the event object - if ( props ) { - jQuery.extend( this, props ); - } - - // Create a timestamp if incoming event doesn't have one - this.timeStamp = src && src.timeStamp || Date.now(); - - // Mark it as fixed - this[ jQuery.expando ] = true; -}; - -// jQuery.Event is based on DOM3 Events as specified by the ECMAScript Language Binding -// https://www.w3.org/TR/2003/WD-DOM-Level-3-Events-20030331/ecma-script-binding.html -jQuery.Event.prototype = { - constructor: jQuery.Event, - isDefaultPrevented: returnFalse, - isPropagationStopped: returnFalse, - isImmediatePropagationStopped: returnFalse, - isSimulated: false, - - preventDefault: function() { - var e = this.originalEvent; - - this.isDefaultPrevented = returnTrue; - - if ( e && !this.isSimulated ) { - e.preventDefault(); - } - }, - stopPropagation: function() { - var e = this.originalEvent; - - this.isPropagationStopped = returnTrue; - - if ( e && !this.isSimulated ) { - e.stopPropagation(); - } - }, - stopImmediatePropagation: function() { - var e = this.originalEvent; - - this.isImmediatePropagationStopped = returnTrue; - - if ( e && !this.isSimulated ) { - e.stopImmediatePropagation(); - } - - this.stopPropagation(); - } -}; - -// Includes all common event props including KeyEvent and MouseEvent specific props -jQuery.each( { - altKey: true, - bubbles: true, - cancelable: true, - changedTouches: true, - ctrlKey: true, - detail: true, - eventPhase: true, - metaKey: true, - pageX: true, - pageY: true, - shiftKey: true, - view: true, - "char": true, - code: true, - charCode: true, - key: true, - keyCode: true, - button: true, - buttons: true, - clientX: true, - clientY: true, - offsetX: true, - offsetY: true, - pointerId: true, - pointerType: true, - screenX: true, - screenY: true, - targetTouches: true, - toElement: true, - touches: true, - - which: function( event ) { - var button = event.button; - - // Add which for key events - if ( event.which == null && rkeyEvent.test( event.type ) ) { - return event.charCode != null ? event.charCode : event.keyCode; - } - - // Add which for click: 1 === left; 2 === middle; 3 === right - if ( !event.which && button !== undefined && rmouseEvent.test( event.type ) ) { - if ( button & 1 ) { - return 1; - } - - if ( button & 2 ) { - return 3; - } - - if ( button & 4 ) { - return 2; - } - - return 0; - } - - return event.which; - } -}, jQuery.event.addProp ); - -jQuery.each( { focus: "focusin", blur: "focusout" }, function( type, delegateType ) { - jQuery.event.special[ type ] = { - - // Utilize native event if possible so blur/focus sequence is correct - setup: function() { - - // Claim the first handler - // dataPriv.set( this, "focus", ... ) - // dataPriv.set( this, "blur", ... ) - leverageNative( this, type, expectSync ); - - // Return false to allow normal processing in the caller - return false; - }, - trigger: function() { - - // Force setup before trigger - leverageNative( this, type ); - - // Return non-false to allow normal event-path propagation - return true; - }, - - delegateType: delegateType - }; -} ); - -// Create mouseenter/leave events using mouseover/out and event-time checks -// so that event delegation works in jQuery. -// Do the same for pointerenter/pointerleave and pointerover/pointerout -// -// Support: Safari 7 only -// Safari sends mouseenter too often; see: -// https://bugs.chromium.org/p/chromium/issues/detail?id=470258 -// for the description of the bug (it existed in older Chrome versions as well). -jQuery.each( { - mouseenter: "mouseover", - mouseleave: "mouseout", - pointerenter: "pointerover", - pointerleave: "pointerout" -}, function( orig, fix ) { - jQuery.event.special[ orig ] = { - delegateType: fix, - bindType: fix, - - handle: function( event ) { - var ret, - target = this, - related = event.relatedTarget, - handleObj = event.handleObj; - - // For mouseenter/leave call the handler if related is outside the target. - // NB: No relatedTarget if the mouse left/entered the browser window - if ( !related || ( related !== target && !jQuery.contains( target, related ) ) ) { - event.type = handleObj.origType; - ret = handleObj.handler.apply( this, arguments ); - event.type = fix; - } - return ret; - } - }; -} ); - -jQuery.fn.extend( { - - on: function( types, selector, data, fn ) { - return on( this, types, selector, data, fn ); - }, - one: function( types, selector, data, fn ) { - return on( this, types, selector, data, fn, 1 ); - }, - off: function( types, selector, fn ) { - var handleObj, type; - if ( types && types.preventDefault && types.handleObj ) { - - // ( event ) dispatched jQuery.Event - handleObj = types.handleObj; - jQuery( types.delegateTarget ).off( - handleObj.namespace ? - handleObj.origType + "." + handleObj.namespace : - handleObj.origType, - handleObj.selector, - handleObj.handler - ); - return this; - } - if ( typeof types === "object" ) { - - // ( types-object [, selector] ) - for ( type in types ) { - this.off( type, selector, types[ type ] ); - } - return this; - } - if ( selector === false || typeof selector === "function" ) { - - // ( types [, fn] ) - fn = selector; - selector = undefined; - } - if ( fn === false ) { - fn = returnFalse; - } - return this.each( function() { - jQuery.event.remove( this, types, fn, selector ); - } ); - } -} ); - - -var - - // Support: IE <=10 - 11, Edge 12 - 13 only - // In IE/Edge using regex groups here causes severe slowdowns. - // See https://connect.microsoft.com/IE/feedback/details/1736512/ - rnoInnerhtml = /\s*$/g; - -// Prefer a tbody over its parent table for containing new rows -function manipulationTarget( elem, content ) { - if ( nodeName( elem, "table" ) && - nodeName( content.nodeType !== 11 ? content : content.firstChild, "tr" ) ) { - - return jQuery( elem ).children( "tbody" )[ 0 ] || elem; - } - - return elem; -} - -// Replace/restore the type attribute of script elements for safe DOM manipulation -function disableScript( elem ) { - elem.type = ( elem.getAttribute( "type" ) !== null ) + "/" + elem.type; - return elem; -} -function restoreScript( elem ) { - if ( ( elem.type || "" ).slice( 0, 5 ) === "true/" ) { - elem.type = elem.type.slice( 5 ); - } else { - elem.removeAttribute( "type" ); - } - - return elem; -} - -function cloneCopyEvent( src, dest ) { - var i, l, type, pdataOld, udataOld, udataCur, events; - - if ( dest.nodeType !== 1 ) { - return; - } - - // 1. Copy private data: events, handlers, etc. - if ( dataPriv.hasData( src ) ) { - pdataOld = dataPriv.get( src ); - events = pdataOld.events; - - if ( events ) { - dataPriv.remove( dest, "handle events" ); - - for ( type in events ) { - for ( i = 0, l = events[ type ].length; i < l; i++ ) { - jQuery.event.add( dest, type, events[ type ][ i ] ); - } - } - } - } - - // 2. Copy user data - if ( dataUser.hasData( src ) ) { - udataOld = dataUser.access( src ); - udataCur = jQuery.extend( {}, udataOld ); - - dataUser.set( dest, udataCur ); - } -} - -// Fix IE bugs, see support tests -function fixInput( src, dest ) { - var nodeName = dest.nodeName.toLowerCase(); - - // Fails to persist the checked state of a cloned checkbox or radio button. - if ( nodeName === "input" && rcheckableType.test( src.type ) ) { - dest.checked = src.checked; - - // Fails to return the selected option to the default selected state when cloning options - } else if ( nodeName === "input" || nodeName === "textarea" ) { - dest.defaultValue = src.defaultValue; - } -} - -function domManip( collection, args, callback, ignored ) { - - // Flatten any nested arrays - args = flat( args ); - - var fragment, first, scripts, hasScripts, node, doc, - i = 0, - l = collection.length, - iNoClone = l - 1, - value = args[ 0 ], - valueIsFunction = isFunction( value ); - - // We can't cloneNode fragments that contain checked, in WebKit - if ( valueIsFunction || - ( l > 1 && typeof value === "string" && - !support.checkClone && rchecked.test( value ) ) ) { - return collection.each( function( index ) { - var self = collection.eq( index ); - if ( valueIsFunction ) { - args[ 0 ] = value.call( this, index, self.html() ); - } - domManip( self, args, callback, ignored ); - } ); - } - - if ( l ) { - fragment = buildFragment( args, collection[ 0 ].ownerDocument, false, collection, ignored ); - first = fragment.firstChild; - - if ( fragment.childNodes.length === 1 ) { - fragment = first; - } - - // Require either new content or an interest in ignored elements to invoke the callback - if ( first || ignored ) { - scripts = jQuery.map( getAll( fragment, "script" ), disableScript ); - hasScripts = scripts.length; - - // Use the original fragment for the last item - // instead of the first because it can end up - // being emptied incorrectly in certain situations (#8070). - for ( ; i < l; i++ ) { - node = fragment; - - if ( i !== iNoClone ) { - node = jQuery.clone( node, true, true ); - - // Keep references to cloned scripts for later restoration - if ( hasScripts ) { - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - jQuery.merge( scripts, getAll( node, "script" ) ); - } - } - - callback.call( collection[ i ], node, i ); - } - - if ( hasScripts ) { - doc = scripts[ scripts.length - 1 ].ownerDocument; - - // Reenable scripts - jQuery.map( scripts, restoreScript ); - - // Evaluate executable scripts on first document insertion - for ( i = 0; i < hasScripts; i++ ) { - node = scripts[ i ]; - if ( rscriptType.test( node.type || "" ) && - !dataPriv.access( node, "globalEval" ) && - jQuery.contains( doc, node ) ) { - - if ( node.src && ( node.type || "" ).toLowerCase() !== "module" ) { - - // Optional AJAX dependency, but won't run scripts if not present - if ( jQuery._evalUrl && !node.noModule ) { - jQuery._evalUrl( node.src, { - nonce: node.nonce || node.getAttribute( "nonce" ) - }, doc ); - } - } else { - DOMEval( node.textContent.replace( rcleanScript, "" ), node, doc ); - } - } - } - } - } - } - - return collection; -} - -function remove( elem, selector, keepData ) { - var node, - nodes = selector ? jQuery.filter( selector, elem ) : elem, - i = 0; - - for ( ; ( node = nodes[ i ] ) != null; i++ ) { - if ( !keepData && node.nodeType === 1 ) { - jQuery.cleanData( getAll( node ) ); - } - - if ( node.parentNode ) { - if ( keepData && isAttached( node ) ) { - setGlobalEval( getAll( node, "script" ) ); - } - node.parentNode.removeChild( node ); - } - } - - return elem; -} - -jQuery.extend( { - htmlPrefilter: function( html ) { - return html; - }, - - clone: function( elem, dataAndEvents, deepDataAndEvents ) { - var i, l, srcElements, destElements, - clone = elem.cloneNode( true ), - inPage = isAttached( elem ); - - // Fix IE cloning issues - if ( !support.noCloneChecked && ( elem.nodeType === 1 || elem.nodeType === 11 ) && - !jQuery.isXMLDoc( elem ) ) { - - // We eschew Sizzle here for performance reasons: https://jsperf.com/getall-vs-sizzle/2 - destElements = getAll( clone ); - srcElements = getAll( elem ); - - for ( i = 0, l = srcElements.length; i < l; i++ ) { - fixInput( srcElements[ i ], destElements[ i ] ); - } - } - - // Copy the events from the original to the clone - if ( dataAndEvents ) { - if ( deepDataAndEvents ) { - srcElements = srcElements || getAll( elem ); - destElements = destElements || getAll( clone ); - - for ( i = 0, l = srcElements.length; i < l; i++ ) { - cloneCopyEvent( srcElements[ i ], destElements[ i ] ); - } - } else { - cloneCopyEvent( elem, clone ); - } - } - - // Preserve script evaluation history - destElements = getAll( clone, "script" ); - if ( destElements.length > 0 ) { - setGlobalEval( destElements, !inPage && getAll( elem, "script" ) ); - } - - // Return the cloned set - return clone; - }, - - cleanData: function( elems ) { - var data, elem, type, - special = jQuery.event.special, - i = 0; - - for ( ; ( elem = elems[ i ] ) !== undefined; i++ ) { - if ( acceptData( elem ) ) { - if ( ( data = elem[ dataPriv.expando ] ) ) { - if ( data.events ) { - for ( type in data.events ) { - if ( special[ type ] ) { - jQuery.event.remove( elem, type ); - - // This is a shortcut to avoid jQuery.event.remove's overhead - } else { - jQuery.removeEvent( elem, type, data.handle ); - } - } - } - - // Support: Chrome <=35 - 45+ - // Assign undefined instead of using delete, see Data#remove - elem[ dataPriv.expando ] = undefined; - } - if ( elem[ dataUser.expando ] ) { - - // Support: Chrome <=35 - 45+ - // Assign undefined instead of using delete, see Data#remove - elem[ dataUser.expando ] = undefined; - } - } - } - } -} ); - -jQuery.fn.extend( { - detach: function( selector ) { - return remove( this, selector, true ); - }, - - remove: function( selector ) { - return remove( this, selector ); - }, - - text: function( value ) { - return access( this, function( value ) { - return value === undefined ? - jQuery.text( this ) : - this.empty().each( function() { - if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) { - this.textContent = value; - } - } ); - }, null, value, arguments.length ); - }, - - append: function() { - return domManip( this, arguments, function( elem ) { - if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) { - var target = manipulationTarget( this, elem ); - target.appendChild( elem ); - } - } ); - }, - - prepend: function() { - return domManip( this, arguments, function( elem ) { - if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) { - var target = manipulationTarget( this, elem ); - target.insertBefore( elem, target.firstChild ); - } - } ); - }, - - before: function() { - return domManip( this, arguments, function( elem ) { - if ( this.parentNode ) { - this.parentNode.insertBefore( elem, this ); - } - } ); - }, - - after: function() { - return domManip( this, arguments, function( elem ) { - if ( this.parentNode ) { - this.parentNode.insertBefore( elem, this.nextSibling ); - } - } ); - }, - - empty: function() { - var elem, - i = 0; - - for ( ; ( elem = this[ i ] ) != null; i++ ) { - if ( elem.nodeType === 1 ) { - - // Prevent memory leaks - jQuery.cleanData( getAll( elem, false ) ); - - // Remove any remaining nodes - elem.textContent = ""; - } - } - - return this; - }, - - clone: function( dataAndEvents, deepDataAndEvents ) { - dataAndEvents = dataAndEvents == null ? false : dataAndEvents; - deepDataAndEvents = deepDataAndEvents == null ? dataAndEvents : deepDataAndEvents; - - return this.map( function() { - return jQuery.clone( this, dataAndEvents, deepDataAndEvents ); - } ); - }, - - html: function( value ) { - return access( this, function( value ) { - var elem = this[ 0 ] || {}, - i = 0, - l = this.length; - - if ( value === undefined && elem.nodeType === 1 ) { - return elem.innerHTML; - } - - // See if we can take a shortcut and just use innerHTML - if ( typeof value === "string" && !rnoInnerhtml.test( value ) && - !wrapMap[ ( rtagName.exec( value ) || [ "", "" ] )[ 1 ].toLowerCase() ] ) { - - value = jQuery.htmlPrefilter( value ); - - try { - for ( ; i < l; i++ ) { - elem = this[ i ] || {}; - - // Remove element nodes and prevent memory leaks - if ( elem.nodeType === 1 ) { - jQuery.cleanData( getAll( elem, false ) ); - elem.innerHTML = value; - } - } - - elem = 0; - - // If using innerHTML throws an exception, use the fallback method - } catch ( e ) {} - } - - if ( elem ) { - this.empty().append( value ); - } - }, null, value, arguments.length ); - }, - - replaceWith: function() { - var ignored = []; - - // Make the changes, replacing each non-ignored context element with the new content - return domManip( this, arguments, function( elem ) { - var parent = this.parentNode; - - if ( jQuery.inArray( this, ignored ) < 0 ) { - jQuery.cleanData( getAll( this ) ); - if ( parent ) { - parent.replaceChild( elem, this ); - } - } - - // Force callback invocation - }, ignored ); - } -} ); - -jQuery.each( { - appendTo: "append", - prependTo: "prepend", - insertBefore: "before", - insertAfter: "after", - replaceAll: "replaceWith" -}, function( name, original ) { - jQuery.fn[ name ] = function( selector ) { - var elems, - ret = [], - insert = jQuery( selector ), - last = insert.length - 1, - i = 0; - - for ( ; i <= last; i++ ) { - elems = i === last ? this : this.clone( true ); - jQuery( insert[ i ] )[ original ]( elems ); - - // Support: Android <=4.0 only, PhantomJS 1 only - // .get() because push.apply(_, arraylike) throws on ancient WebKit - push.apply( ret, elems.get() ); - } - - return this.pushStack( ret ); - }; -} ); -var rnumnonpx = new RegExp( "^(" + pnum + ")(?!px)[a-z%]+$", "i" ); - -var getStyles = function( elem ) { - - // Support: IE <=11 only, Firefox <=30 (#15098, #14150) - // IE throws on elements created in popups - // FF meanwhile throws on frame elements through "defaultView.getComputedStyle" - var view = elem.ownerDocument.defaultView; - - if ( !view || !view.opener ) { - view = window; - } - - return view.getComputedStyle( elem ); - }; - -var swap = function( elem, options, callback ) { - var ret, name, - old = {}; - - // Remember the old values, and insert the new ones - for ( name in options ) { - old[ name ] = elem.style[ name ]; - elem.style[ name ] = options[ name ]; - } - - ret = callback.call( elem ); - - // Revert the old values - for ( name in options ) { - elem.style[ name ] = old[ name ]; - } - - return ret; -}; - - -var rboxStyle = new RegExp( cssExpand.join( "|" ), "i" ); - - - -( function() { - - // Executing both pixelPosition & boxSizingReliable tests require only one layout - // so they're executed at the same time to save the second computation. - function computeStyleTests() { - - // This is a singleton, we need to execute it only once - if ( !div ) { - return; - } - - container.style.cssText = "position:absolute;left:-11111px;width:60px;" + - "margin-top:1px;padding:0;border:0"; - div.style.cssText = - "position:relative;display:block;box-sizing:border-box;overflow:scroll;" + - "margin:auto;border:1px;padding:1px;" + - "width:60%;top:1%"; - documentElement.appendChild( container ).appendChild( div ); - - var divStyle = window.getComputedStyle( div ); - pixelPositionVal = divStyle.top !== "1%"; - - // Support: Android 4.0 - 4.3 only, Firefox <=3 - 44 - reliableMarginLeftVal = roundPixelMeasures( divStyle.marginLeft ) === 12; - - // Support: Android 4.0 - 4.3 only, Safari <=9.1 - 10.1, iOS <=7.0 - 9.3 - // Some styles come back with percentage values, even though they shouldn't - div.style.right = "60%"; - pixelBoxStylesVal = roundPixelMeasures( divStyle.right ) === 36; - - // Support: IE 9 - 11 only - // Detect misreporting of content dimensions for box-sizing:border-box elements - boxSizingReliableVal = roundPixelMeasures( divStyle.width ) === 36; - - // Support: IE 9 only - // Detect overflow:scroll screwiness (gh-3699) - // Support: Chrome <=64 - // Don't get tricked when zoom affects offsetWidth (gh-4029) - div.style.position = "absolute"; - scrollboxSizeVal = roundPixelMeasures( div.offsetWidth / 3 ) === 12; - - documentElement.removeChild( container ); - - // Nullify the div so it wouldn't be stored in the memory and - // it will also be a sign that checks already performed - div = null; - } - - function roundPixelMeasures( measure ) { - return Math.round( parseFloat( measure ) ); - } - - var pixelPositionVal, boxSizingReliableVal, scrollboxSizeVal, pixelBoxStylesVal, - reliableTrDimensionsVal, reliableMarginLeftVal, - container = document.createElement( "div" ), - div = document.createElement( "div" ); - - // Finish early in limited (non-browser) environments - if ( !div.style ) { - return; - } - - // Support: IE <=9 - 11 only - // Style of cloned element affects source element cloned (#8908) - div.style.backgroundClip = "content-box"; - div.cloneNode( true ).style.backgroundClip = ""; - support.clearCloneStyle = div.style.backgroundClip === "content-box"; - - jQuery.extend( support, { - boxSizingReliable: function() { - computeStyleTests(); - return boxSizingReliableVal; - }, - pixelBoxStyles: function() { - computeStyleTests(); - return pixelBoxStylesVal; - }, - pixelPosition: function() { - computeStyleTests(); - return pixelPositionVal; - }, - reliableMarginLeft: function() { - computeStyleTests(); - return reliableMarginLeftVal; - }, - scrollboxSize: function() { - computeStyleTests(); - return scrollboxSizeVal; - }, - - // Support: IE 9 - 11+, Edge 15 - 18+ - // IE/Edge misreport `getComputedStyle` of table rows with width/height - // set in CSS while `offset*` properties report correct values. - // Behavior in IE 9 is more subtle than in newer versions & it passes - // some versions of this test; make sure not to make it pass there! - reliableTrDimensions: function() { - var table, tr, trChild, trStyle; - if ( reliableTrDimensionsVal == null ) { - table = document.createElement( "table" ); - tr = document.createElement( "tr" ); - trChild = document.createElement( "div" ); - - table.style.cssText = "position:absolute;left:-11111px"; - tr.style.height = "1px"; - trChild.style.height = "9px"; - - documentElement - .appendChild( table ) - .appendChild( tr ) - .appendChild( trChild ); - - trStyle = window.getComputedStyle( tr ); - reliableTrDimensionsVal = parseInt( trStyle.height ) > 3; - - documentElement.removeChild( table ); - } - return reliableTrDimensionsVal; - } - } ); -} )(); - - -function curCSS( elem, name, computed ) { - var width, minWidth, maxWidth, ret, - - // Support: Firefox 51+ - // Retrieving style before computed somehow - // fixes an issue with getting wrong values - // on detached elements - style = elem.style; - - computed = computed || getStyles( elem ); - - // getPropertyValue is needed for: - // .css('filter') (IE 9 only, #12537) - // .css('--customProperty) (#3144) - if ( computed ) { - ret = computed.getPropertyValue( name ) || computed[ name ]; - - if ( ret === "" && !isAttached( elem ) ) { - ret = jQuery.style( elem, name ); - } - - // A tribute to the "awesome hack by Dean Edwards" - // Android Browser returns percentage for some values, - // but width seems to be reliably pixels. - // This is against the CSSOM draft spec: - // https://drafts.csswg.org/cssom/#resolved-values - if ( !support.pixelBoxStyles() && rnumnonpx.test( ret ) && rboxStyle.test( name ) ) { - - // Remember the original values - width = style.width; - minWidth = style.minWidth; - maxWidth = style.maxWidth; - - // Put in the new values to get a computed value out - style.minWidth = style.maxWidth = style.width = ret; - ret = computed.width; - - // Revert the changed values - style.width = width; - style.minWidth = minWidth; - style.maxWidth = maxWidth; - } - } - - return ret !== undefined ? - - // Support: IE <=9 - 11 only - // IE returns zIndex value as an integer. - ret + "" : - ret; -} - - -function addGetHookIf( conditionFn, hookFn ) { - - // Define the hook, we'll check on the first run if it's really needed. - return { - get: function() { - if ( conditionFn() ) { - - // Hook not needed (or it's not possible to use it due - // to missing dependency), remove it. - delete this.get; - return; - } - - // Hook needed; redefine it so that the support test is not executed again. - return ( this.get = hookFn ).apply( this, arguments ); - } - }; -} - - -var cssPrefixes = [ "Webkit", "Moz", "ms" ], - emptyStyle = document.createElement( "div" ).style, - vendorProps = {}; - -// Return a vendor-prefixed property or undefined -function vendorPropName( name ) { - - // Check for vendor prefixed names - var capName = name[ 0 ].toUpperCase() + name.slice( 1 ), - i = cssPrefixes.length; - - while ( i-- ) { - name = cssPrefixes[ i ] + capName; - if ( name in emptyStyle ) { - return name; - } - } -} - -// Return a potentially-mapped jQuery.cssProps or vendor prefixed property -function finalPropName( name ) { - var final = jQuery.cssProps[ name ] || vendorProps[ name ]; - - if ( final ) { - return final; - } - if ( name in emptyStyle ) { - return name; - } - return vendorProps[ name ] = vendorPropName( name ) || name; -} - - -var - - // Swappable if display is none or starts with table - // except "table", "table-cell", or "table-caption" - // See here for display values: https://developer.mozilla.org/en-US/docs/CSS/display - rdisplayswap = /^(none|table(?!-c[ea]).+)/, - rcustomProp = /^--/, - cssShow = { position: "absolute", visibility: "hidden", display: "block" }, - cssNormalTransform = { - letterSpacing: "0", - fontWeight: "400" - }; - -function setPositiveNumber( _elem, value, subtract ) { - - // Any relative (+/-) values have already been - // normalized at this point - var matches = rcssNum.exec( value ); - return matches ? - - // Guard against undefined "subtract", e.g., when used as in cssHooks - Math.max( 0, matches[ 2 ] - ( subtract || 0 ) ) + ( matches[ 3 ] || "px" ) : - value; -} - -function boxModelAdjustment( elem, dimension, box, isBorderBox, styles, computedVal ) { - var i = dimension === "width" ? 1 : 0, - extra = 0, - delta = 0; - - // Adjustment may not be necessary - if ( box === ( isBorderBox ? "border" : "content" ) ) { - return 0; - } - - for ( ; i < 4; i += 2 ) { - - // Both box models exclude margin - if ( box === "margin" ) { - delta += jQuery.css( elem, box + cssExpand[ i ], true, styles ); - } - - // If we get here with a content-box, we're seeking "padding" or "border" or "margin" - if ( !isBorderBox ) { - - // Add padding - delta += jQuery.css( elem, "padding" + cssExpand[ i ], true, styles ); - - // For "border" or "margin", add border - if ( box !== "padding" ) { - delta += jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles ); - - // But still keep track of it otherwise - } else { - extra += jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles ); - } - - // If we get here with a border-box (content + padding + border), we're seeking "content" or - // "padding" or "margin" - } else { - - // For "content", subtract padding - if ( box === "content" ) { - delta -= jQuery.css( elem, "padding" + cssExpand[ i ], true, styles ); - } - - // For "content" or "padding", subtract border - if ( box !== "margin" ) { - delta -= jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles ); - } - } - } - - // Account for positive content-box scroll gutter when requested by providing computedVal - if ( !isBorderBox && computedVal >= 0 ) { - - // offsetWidth/offsetHeight is a rounded sum of content, padding, scroll gutter, and border - // Assuming integer scroll gutter, subtract the rest and round down - delta += Math.max( 0, Math.ceil( - elem[ "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ) ] - - computedVal - - delta - - extra - - 0.5 - - // If offsetWidth/offsetHeight is unknown, then we can't determine content-box scroll gutter - // Use an explicit zero to avoid NaN (gh-3964) - ) ) || 0; - } - - return delta; -} - -function getWidthOrHeight( elem, dimension, extra ) { - - // Start with computed style - var styles = getStyles( elem ), - - // To avoid forcing a reflow, only fetch boxSizing if we need it (gh-4322). - // Fake content-box until we know it's needed to know the true value. - boxSizingNeeded = !support.boxSizingReliable() || extra, - isBorderBox = boxSizingNeeded && - jQuery.css( elem, "boxSizing", false, styles ) === "border-box", - valueIsBorderBox = isBorderBox, - - val = curCSS( elem, dimension, styles ), - offsetProp = "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ); - - // Support: Firefox <=54 - // Return a confounding non-pixel value or feign ignorance, as appropriate. - if ( rnumnonpx.test( val ) ) { - if ( !extra ) { - return val; - } - val = "auto"; - } - - - // Support: IE 9 - 11 only - // Use offsetWidth/offsetHeight for when box sizing is unreliable. - // In those cases, the computed value can be trusted to be border-box. - if ( ( !support.boxSizingReliable() && isBorderBox || - - // Support: IE 10 - 11+, Edge 15 - 18+ - // IE/Edge misreport `getComputedStyle` of table rows with width/height - // set in CSS while `offset*` properties report correct values. - // Interestingly, in some cases IE 9 doesn't suffer from this issue. - !support.reliableTrDimensions() && nodeName( elem, "tr" ) || - - // Fall back to offsetWidth/offsetHeight when value is "auto" - // This happens for inline elements with no explicit setting (gh-3571) - val === "auto" || - - // Support: Android <=4.1 - 4.3 only - // Also use offsetWidth/offsetHeight for misreported inline dimensions (gh-3602) - !parseFloat( val ) && jQuery.css( elem, "display", false, styles ) === "inline" ) && - - // Make sure the element is visible & connected - elem.getClientRects().length ) { - - isBorderBox = jQuery.css( elem, "boxSizing", false, styles ) === "border-box"; - - // Where available, offsetWidth/offsetHeight approximate border box dimensions. - // Where not available (e.g., SVG), assume unreliable box-sizing and interpret the - // retrieved value as a content box dimension. - valueIsBorderBox = offsetProp in elem; - if ( valueIsBorderBox ) { - val = elem[ offsetProp ]; - } - } - - // Normalize "" and auto - val = parseFloat( val ) || 0; - - // Adjust for the element's box model - return ( val + - boxModelAdjustment( - elem, - dimension, - extra || ( isBorderBox ? "border" : "content" ), - valueIsBorderBox, - styles, - - // Provide the current computed size to request scroll gutter calculation (gh-3589) - val - ) - ) + "px"; -} - -jQuery.extend( { - - // Add in style property hooks for overriding the default - // behavior of getting and setting a style property - cssHooks: { - opacity: { - get: function( elem, computed ) { - if ( computed ) { - - // We should always get a number back from opacity - var ret = curCSS( elem, "opacity" ); - return ret === "" ? "1" : ret; - } - } - } - }, - - // Don't automatically add "px" to these possibly-unitless properties - cssNumber: { - "animationIterationCount": true, - "columnCount": true, - "fillOpacity": true, - "flexGrow": true, - "flexShrink": true, - "fontWeight": true, - "gridArea": true, - "gridColumn": true, - "gridColumnEnd": true, - "gridColumnStart": true, - "gridRow": true, - "gridRowEnd": true, - "gridRowStart": true, - "lineHeight": true, - "opacity": true, - "order": true, - "orphans": true, - "widows": true, - "zIndex": true, - "zoom": true - }, - - // Add in properties whose names you wish to fix before - // setting or getting the value - cssProps: {}, - - // Get and set the style property on a DOM Node - style: function( elem, name, value, extra ) { - - // Don't set styles on text and comment nodes - if ( !elem || elem.nodeType === 3 || elem.nodeType === 8 || !elem.style ) { - return; - } - - // Make sure that we're working with the right name - var ret, type, hooks, - origName = camelCase( name ), - isCustomProp = rcustomProp.test( name ), - style = elem.style; - - // Make sure that we're working with the right name. We don't - // want to query the value if it is a CSS custom property - // since they are user-defined. - if ( !isCustomProp ) { - name = finalPropName( origName ); - } - - // Gets hook for the prefixed version, then unprefixed version - hooks = jQuery.cssHooks[ name ] || jQuery.cssHooks[ origName ]; - - // Check if we're setting a value - if ( value !== undefined ) { - type = typeof value; - - // Convert "+=" or "-=" to relative numbers (#7345) - if ( type === "string" && ( ret = rcssNum.exec( value ) ) && ret[ 1 ] ) { - value = adjustCSS( elem, name, ret ); - - // Fixes bug #9237 - type = "number"; - } - - // Make sure that null and NaN values aren't set (#7116) - if ( value == null || value !== value ) { - return; - } - - // If a number was passed in, add the unit (except for certain CSS properties) - // The isCustomProp check can be removed in jQuery 4.0 when we only auto-append - // "px" to a few hardcoded values. - if ( type === "number" && !isCustomProp ) { - value += ret && ret[ 3 ] || ( jQuery.cssNumber[ origName ] ? "" : "px" ); - } - - // background-* props affect original clone's values - if ( !support.clearCloneStyle && value === "" && name.indexOf( "background" ) === 0 ) { - style[ name ] = "inherit"; - } - - // If a hook was provided, use that value, otherwise just set the specified value - if ( !hooks || !( "set" in hooks ) || - ( value = hooks.set( elem, value, extra ) ) !== undefined ) { - - if ( isCustomProp ) { - style.setProperty( name, value ); - } else { - style[ name ] = value; - } - } - - } else { - - // If a hook was provided get the non-computed value from there - if ( hooks && "get" in hooks && - ( ret = hooks.get( elem, false, extra ) ) !== undefined ) { - - return ret; - } - - // Otherwise just get the value from the style object - return style[ name ]; - } - }, - - css: function( elem, name, extra, styles ) { - var val, num, hooks, - origName = camelCase( name ), - isCustomProp = rcustomProp.test( name ); - - // Make sure that we're working with the right name. We don't - // want to modify the value if it is a CSS custom property - // since they are user-defined. - if ( !isCustomProp ) { - name = finalPropName( origName ); - } - - // Try prefixed name followed by the unprefixed name - hooks = jQuery.cssHooks[ name ] || jQuery.cssHooks[ origName ]; - - // If a hook was provided get the computed value from there - if ( hooks && "get" in hooks ) { - val = hooks.get( elem, true, extra ); - } - - // Otherwise, if a way to get the computed value exists, use that - if ( val === undefined ) { - val = curCSS( elem, name, styles ); - } - - // Convert "normal" to computed value - if ( val === "normal" && name in cssNormalTransform ) { - val = cssNormalTransform[ name ]; - } - - // Make numeric if forced or a qualifier was provided and val looks numeric - if ( extra === "" || extra ) { - num = parseFloat( val ); - return extra === true || isFinite( num ) ? num || 0 : val; - } - - return val; - } -} ); - -jQuery.each( [ "height", "width" ], function( _i, dimension ) { - jQuery.cssHooks[ dimension ] = { - get: function( elem, computed, extra ) { - if ( computed ) { - - // Certain elements can have dimension info if we invisibly show them - // but it must have a current display style that would benefit - return rdisplayswap.test( jQuery.css( elem, "display" ) ) && - - // Support: Safari 8+ - // Table columns in Safari have non-zero offsetWidth & zero - // getBoundingClientRect().width unless display is changed. - // Support: IE <=11 only - // Running getBoundingClientRect on a disconnected node - // in IE throws an error. - ( !elem.getClientRects().length || !elem.getBoundingClientRect().width ) ? - swap( elem, cssShow, function() { - return getWidthOrHeight( elem, dimension, extra ); - } ) : - getWidthOrHeight( elem, dimension, extra ); - } - }, - - set: function( elem, value, extra ) { - var matches, - styles = getStyles( elem ), - - // Only read styles.position if the test has a chance to fail - // to avoid forcing a reflow. - scrollboxSizeBuggy = !support.scrollboxSize() && - styles.position === "absolute", - - // To avoid forcing a reflow, only fetch boxSizing if we need it (gh-3991) - boxSizingNeeded = scrollboxSizeBuggy || extra, - isBorderBox = boxSizingNeeded && - jQuery.css( elem, "boxSizing", false, styles ) === "border-box", - subtract = extra ? - boxModelAdjustment( - elem, - dimension, - extra, - isBorderBox, - styles - ) : - 0; - - // Account for unreliable border-box dimensions by comparing offset* to computed and - // faking a content-box to get border and padding (gh-3699) - if ( isBorderBox && scrollboxSizeBuggy ) { - subtract -= Math.ceil( - elem[ "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ) ] - - parseFloat( styles[ dimension ] ) - - boxModelAdjustment( elem, dimension, "border", false, styles ) - - 0.5 - ); - } - - // Convert to pixels if value adjustment is needed - if ( subtract && ( matches = rcssNum.exec( value ) ) && - ( matches[ 3 ] || "px" ) !== "px" ) { - - elem.style[ dimension ] = value; - value = jQuery.css( elem, dimension ); - } - - return setPositiveNumber( elem, value, subtract ); - } - }; -} ); - -jQuery.cssHooks.marginLeft = addGetHookIf( support.reliableMarginLeft, - function( elem, computed ) { - if ( computed ) { - return ( parseFloat( curCSS( elem, "marginLeft" ) ) || - elem.getBoundingClientRect().left - - swap( elem, { marginLeft: 0 }, function() { - return elem.getBoundingClientRect().left; - } ) - ) + "px"; - } - } -); - -// These hooks are used by animate to expand properties -jQuery.each( { - margin: "", - padding: "", - border: "Width" -}, function( prefix, suffix ) { - jQuery.cssHooks[ prefix + suffix ] = { - expand: function( value ) { - var i = 0, - expanded = {}, - - // Assumes a single number if not a string - parts = typeof value === "string" ? value.split( " " ) : [ value ]; - - for ( ; i < 4; i++ ) { - expanded[ prefix + cssExpand[ i ] + suffix ] = - parts[ i ] || parts[ i - 2 ] || parts[ 0 ]; - } - - return expanded; - } - }; - - if ( prefix !== "margin" ) { - jQuery.cssHooks[ prefix + suffix ].set = setPositiveNumber; - } -} ); - -jQuery.fn.extend( { - css: function( name, value ) { - return access( this, function( elem, name, value ) { - var styles, len, - map = {}, - i = 0; - - if ( Array.isArray( name ) ) { - styles = getStyles( elem ); - len = name.length; - - for ( ; i < len; i++ ) { - map[ name[ i ] ] = jQuery.css( elem, name[ i ], false, styles ); - } - - return map; - } - - return value !== undefined ? - jQuery.style( elem, name, value ) : - jQuery.css( elem, name ); - }, name, value, arguments.length > 1 ); - } -} ); - - -function Tween( elem, options, prop, end, easing ) { - return new Tween.prototype.init( elem, options, prop, end, easing ); -} -jQuery.Tween = Tween; - -Tween.prototype = { - constructor: Tween, - init: function( elem, options, prop, end, easing, unit ) { - this.elem = elem; - this.prop = prop; - this.easing = easing || jQuery.easing._default; - this.options = options; - this.start = this.now = this.cur(); - this.end = end; - this.unit = unit || ( jQuery.cssNumber[ prop ] ? "" : "px" ); - }, - cur: function() { - var hooks = Tween.propHooks[ this.prop ]; - - return hooks && hooks.get ? - hooks.get( this ) : - Tween.propHooks._default.get( this ); - }, - run: function( percent ) { - var eased, - hooks = Tween.propHooks[ this.prop ]; - - if ( this.options.duration ) { - this.pos = eased = jQuery.easing[ this.easing ]( - percent, this.options.duration * percent, 0, 1, this.options.duration - ); - } else { - this.pos = eased = percent; - } - this.now = ( this.end - this.start ) * eased + this.start; - - if ( this.options.step ) { - this.options.step.call( this.elem, this.now, this ); - } - - if ( hooks && hooks.set ) { - hooks.set( this ); - } else { - Tween.propHooks._default.set( this ); - } - return this; - } -}; - -Tween.prototype.init.prototype = Tween.prototype; - -Tween.propHooks = { - _default: { - get: function( tween ) { - var result; - - // Use a property on the element directly when it is not a DOM element, - // or when there is no matching style property that exists. - if ( tween.elem.nodeType !== 1 || - tween.elem[ tween.prop ] != null && tween.elem.style[ tween.prop ] == null ) { - return tween.elem[ tween.prop ]; - } - - // Passing an empty string as a 3rd parameter to .css will automatically - // attempt a parseFloat and fallback to a string if the parse fails. - // Simple values such as "10px" are parsed to Float; - // complex values such as "rotate(1rad)" are returned as-is. - result = jQuery.css( tween.elem, tween.prop, "" ); - - // Empty strings, null, undefined and "auto" are converted to 0. - return !result || result === "auto" ? 0 : result; - }, - set: function( tween ) { - - // Use step hook for back compat. - // Use cssHook if its there. - // Use .style if available and use plain properties where available. - if ( jQuery.fx.step[ tween.prop ] ) { - jQuery.fx.step[ tween.prop ]( tween ); - } else if ( tween.elem.nodeType === 1 && ( - jQuery.cssHooks[ tween.prop ] || - tween.elem.style[ finalPropName( tween.prop ) ] != null ) ) { - jQuery.style( tween.elem, tween.prop, tween.now + tween.unit ); - } else { - tween.elem[ tween.prop ] = tween.now; - } - } - } -}; - -// Support: IE <=9 only -// Panic based approach to setting things on disconnected nodes -Tween.propHooks.scrollTop = Tween.propHooks.scrollLeft = { - set: function( tween ) { - if ( tween.elem.nodeType && tween.elem.parentNode ) { - tween.elem[ tween.prop ] = tween.now; - } - } -}; - -jQuery.easing = { - linear: function( p ) { - return p; - }, - swing: function( p ) { - return 0.5 - Math.cos( p * Math.PI ) / 2; - }, - _default: "swing" -}; - -jQuery.fx = Tween.prototype.init; - -// Back compat <1.8 extension point -jQuery.fx.step = {}; - - - - -var - fxNow, inProgress, - rfxtypes = /^(?:toggle|show|hide)$/, - rrun = /queueHooks$/; - -function schedule() { - if ( inProgress ) { - if ( document.hidden === false && window.requestAnimationFrame ) { - window.requestAnimationFrame( schedule ); - } else { - window.setTimeout( schedule, jQuery.fx.interval ); - } - - jQuery.fx.tick(); - } -} - -// Animations created synchronously will run synchronously -function createFxNow() { - window.setTimeout( function() { - fxNow = undefined; - } ); - return ( fxNow = Date.now() ); -} - -// Generate parameters to create a standard animation -function genFx( type, includeWidth ) { - var which, - i = 0, - attrs = { height: type }; - - // If we include width, step value is 1 to do all cssExpand values, - // otherwise step value is 2 to skip over Left and Right - includeWidth = includeWidth ? 1 : 0; - for ( ; i < 4; i += 2 - includeWidth ) { - which = cssExpand[ i ]; - attrs[ "margin" + which ] = attrs[ "padding" + which ] = type; - } - - if ( includeWidth ) { - attrs.opacity = attrs.width = type; - } - - return attrs; -} - -function createTween( value, prop, animation ) { - var tween, - collection = ( Animation.tweeners[ prop ] || [] ).concat( Animation.tweeners[ "*" ] ), - index = 0, - length = collection.length; - for ( ; index < length; index++ ) { - if ( ( tween = collection[ index ].call( animation, prop, value ) ) ) { - - // We're done with this property - return tween; - } - } -} - -function defaultPrefilter( elem, props, opts ) { - var prop, value, toggle, hooks, oldfire, propTween, restoreDisplay, display, - isBox = "width" in props || "height" in props, - anim = this, - orig = {}, - style = elem.style, - hidden = elem.nodeType && isHiddenWithinTree( elem ), - dataShow = dataPriv.get( elem, "fxshow" ); - - // Queue-skipping animations hijack the fx hooks - if ( !opts.queue ) { - hooks = jQuery._queueHooks( elem, "fx" ); - if ( hooks.unqueued == null ) { - hooks.unqueued = 0; - oldfire = hooks.empty.fire; - hooks.empty.fire = function() { - if ( !hooks.unqueued ) { - oldfire(); - } - }; - } - hooks.unqueued++; - - anim.always( function() { - - // Ensure the complete handler is called before this completes - anim.always( function() { - hooks.unqueued--; - if ( !jQuery.queue( elem, "fx" ).length ) { - hooks.empty.fire(); - } - } ); - } ); - } - - // Detect show/hide animations - for ( prop in props ) { - value = props[ prop ]; - if ( rfxtypes.test( value ) ) { - delete props[ prop ]; - toggle = toggle || value === "toggle"; - if ( value === ( hidden ? "hide" : "show" ) ) { - - // Pretend to be hidden if this is a "show" and - // there is still data from a stopped show/hide - if ( value === "show" && dataShow && dataShow[ prop ] !== undefined ) { - hidden = true; - - // Ignore all other no-op show/hide data - } else { - continue; - } - } - orig[ prop ] = dataShow && dataShow[ prop ] || jQuery.style( elem, prop ); - } - } - - // Bail out if this is a no-op like .hide().hide() - propTween = !jQuery.isEmptyObject( props ); - if ( !propTween && jQuery.isEmptyObject( orig ) ) { - return; - } - - // Restrict "overflow" and "display" styles during box animations - if ( isBox && elem.nodeType === 1 ) { - - // Support: IE <=9 - 11, Edge 12 - 15 - // Record all 3 overflow attributes because IE does not infer the shorthand - // from identically-valued overflowX and overflowY and Edge just mirrors - // the overflowX value there. - opts.overflow = [ style.overflow, style.overflowX, style.overflowY ]; - - // Identify a display type, preferring old show/hide data over the CSS cascade - restoreDisplay = dataShow && dataShow.display; - if ( restoreDisplay == null ) { - restoreDisplay = dataPriv.get( elem, "display" ); - } - display = jQuery.css( elem, "display" ); - if ( display === "none" ) { - if ( restoreDisplay ) { - display = restoreDisplay; - } else { - - // Get nonempty value(s) by temporarily forcing visibility - showHide( [ elem ], true ); - restoreDisplay = elem.style.display || restoreDisplay; - display = jQuery.css( elem, "display" ); - showHide( [ elem ] ); - } - } - - // Animate inline elements as inline-block - if ( display === "inline" || display === "inline-block" && restoreDisplay != null ) { - if ( jQuery.css( elem, "float" ) === "none" ) { - - // Restore the original display value at the end of pure show/hide animations - if ( !propTween ) { - anim.done( function() { - style.display = restoreDisplay; - } ); - if ( restoreDisplay == null ) { - display = style.display; - restoreDisplay = display === "none" ? "" : display; - } - } - style.display = "inline-block"; - } - } - } - - if ( opts.overflow ) { - style.overflow = "hidden"; - anim.always( function() { - style.overflow = opts.overflow[ 0 ]; - style.overflowX = opts.overflow[ 1 ]; - style.overflowY = opts.overflow[ 2 ]; - } ); - } - - // Implement show/hide animations - propTween = false; - for ( prop in orig ) { - - // General show/hide setup for this element animation - if ( !propTween ) { - if ( dataShow ) { - if ( "hidden" in dataShow ) { - hidden = dataShow.hidden; - } - } else { - dataShow = dataPriv.access( elem, "fxshow", { display: restoreDisplay } ); - } - - // Store hidden/visible for toggle so `.stop().toggle()` "reverses" - if ( toggle ) { - dataShow.hidden = !hidden; - } - - // Show elements before animating them - if ( hidden ) { - showHide( [ elem ], true ); - } - - /* eslint-disable no-loop-func */ - - anim.done( function() { - - /* eslint-enable no-loop-func */ - - // The final step of a "hide" animation is actually hiding the element - if ( !hidden ) { - showHide( [ elem ] ); - } - dataPriv.remove( elem, "fxshow" ); - for ( prop in orig ) { - jQuery.style( elem, prop, orig[ prop ] ); - } - } ); - } - - // Per-property setup - propTween = createTween( hidden ? dataShow[ prop ] : 0, prop, anim ); - if ( !( prop in dataShow ) ) { - dataShow[ prop ] = propTween.start; - if ( hidden ) { - propTween.end = propTween.start; - propTween.start = 0; - } - } - } -} - -function propFilter( props, specialEasing ) { - var index, name, easing, value, hooks; - - // camelCase, specialEasing and expand cssHook pass - for ( index in props ) { - name = camelCase( index ); - easing = specialEasing[ name ]; - value = props[ index ]; - if ( Array.isArray( value ) ) { - easing = value[ 1 ]; - value = props[ index ] = value[ 0 ]; - } - - if ( index !== name ) { - props[ name ] = value; - delete props[ index ]; - } - - hooks = jQuery.cssHooks[ name ]; - if ( hooks && "expand" in hooks ) { - value = hooks.expand( value ); - delete props[ name ]; - - // Not quite $.extend, this won't overwrite existing keys. - // Reusing 'index' because we have the correct "name" - for ( index in value ) { - if ( !( index in props ) ) { - props[ index ] = value[ index ]; - specialEasing[ index ] = easing; - } - } - } else { - specialEasing[ name ] = easing; - } - } -} - -function Animation( elem, properties, options ) { - var result, - stopped, - index = 0, - length = Animation.prefilters.length, - deferred = jQuery.Deferred().always( function() { - - // Don't match elem in the :animated selector - delete tick.elem; - } ), - tick = function() { - if ( stopped ) { - return false; - } - var currentTime = fxNow || createFxNow(), - remaining = Math.max( 0, animation.startTime + animation.duration - currentTime ), - - // Support: Android 2.3 only - // Archaic crash bug won't allow us to use `1 - ( 0.5 || 0 )` (#12497) - temp = remaining / animation.duration || 0, - percent = 1 - temp, - index = 0, - length = animation.tweens.length; - - for ( ; index < length; index++ ) { - animation.tweens[ index ].run( percent ); - } - - deferred.notifyWith( elem, [ animation, percent, remaining ] ); - - // If there's more to do, yield - if ( percent < 1 && length ) { - return remaining; - } - - // If this was an empty animation, synthesize a final progress notification - if ( !length ) { - deferred.notifyWith( elem, [ animation, 1, 0 ] ); - } - - // Resolve the animation and report its conclusion - deferred.resolveWith( elem, [ animation ] ); - return false; - }, - animation = deferred.promise( { - elem: elem, - props: jQuery.extend( {}, properties ), - opts: jQuery.extend( true, { - specialEasing: {}, - easing: jQuery.easing._default - }, options ), - originalProperties: properties, - originalOptions: options, - startTime: fxNow || createFxNow(), - duration: options.duration, - tweens: [], - createTween: function( prop, end ) { - var tween = jQuery.Tween( elem, animation.opts, prop, end, - animation.opts.specialEasing[ prop ] || animation.opts.easing ); - animation.tweens.push( tween ); - return tween; - }, - stop: function( gotoEnd ) { - var index = 0, - - // If we are going to the end, we want to run all the tweens - // otherwise we skip this part - length = gotoEnd ? animation.tweens.length : 0; - if ( stopped ) { - return this; - } - stopped = true; - for ( ; index < length; index++ ) { - animation.tweens[ index ].run( 1 ); - } - - // Resolve when we played the last frame; otherwise, reject - if ( gotoEnd ) { - deferred.notifyWith( elem, [ animation, 1, 0 ] ); - deferred.resolveWith( elem, [ animation, gotoEnd ] ); - } else { - deferred.rejectWith( elem, [ animation, gotoEnd ] ); - } - return this; - } - } ), - props = animation.props; - - propFilter( props, animation.opts.specialEasing ); - - for ( ; index < length; index++ ) { - result = Animation.prefilters[ index ].call( animation, elem, props, animation.opts ); - if ( result ) { - if ( isFunction( result.stop ) ) { - jQuery._queueHooks( animation.elem, animation.opts.queue ).stop = - result.stop.bind( result ); - } - return result; - } - } - - jQuery.map( props, createTween, animation ); - - if ( isFunction( animation.opts.start ) ) { - animation.opts.start.call( elem, animation ); - } - - // Attach callbacks from options - animation - .progress( animation.opts.progress ) - .done( animation.opts.done, animation.opts.complete ) - .fail( animation.opts.fail ) - .always( animation.opts.always ); - - jQuery.fx.timer( - jQuery.extend( tick, { - elem: elem, - anim: animation, - queue: animation.opts.queue - } ) - ); - - return animation; -} - -jQuery.Animation = jQuery.extend( Animation, { - - tweeners: { - "*": [ function( prop, value ) { - var tween = this.createTween( prop, value ); - adjustCSS( tween.elem, prop, rcssNum.exec( value ), tween ); - return tween; - } ] - }, - - tweener: function( props, callback ) { - if ( isFunction( props ) ) { - callback = props; - props = [ "*" ]; - } else { - props = props.match( rnothtmlwhite ); - } - - var prop, - index = 0, - length = props.length; - - for ( ; index < length; index++ ) { - prop = props[ index ]; - Animation.tweeners[ prop ] = Animation.tweeners[ prop ] || []; - Animation.tweeners[ prop ].unshift( callback ); - } - }, - - prefilters: [ defaultPrefilter ], - - prefilter: function( callback, prepend ) { - if ( prepend ) { - Animation.prefilters.unshift( callback ); - } else { - Animation.prefilters.push( callback ); - } - } -} ); - -jQuery.speed = function( speed, easing, fn ) { - var opt = speed && typeof speed === "object" ? jQuery.extend( {}, speed ) : { - complete: fn || !fn && easing || - isFunction( speed ) && speed, - duration: speed, - easing: fn && easing || easing && !isFunction( easing ) && easing - }; - - // Go to the end state if fx are off - if ( jQuery.fx.off ) { - opt.duration = 0; - - } else { - if ( typeof opt.duration !== "number" ) { - if ( opt.duration in jQuery.fx.speeds ) { - opt.duration = jQuery.fx.speeds[ opt.duration ]; - - } else { - opt.duration = jQuery.fx.speeds._default; - } - } - } - - // Normalize opt.queue - true/undefined/null -> "fx" - if ( opt.queue == null || opt.queue === true ) { - opt.queue = "fx"; - } - - // Queueing - opt.old = opt.complete; - - opt.complete = function() { - if ( isFunction( opt.old ) ) { - opt.old.call( this ); - } - - if ( opt.queue ) { - jQuery.dequeue( this, opt.queue ); - } - }; - - return opt; -}; - -jQuery.fn.extend( { - fadeTo: function( speed, to, easing, callback ) { - - // Show any hidden elements after setting opacity to 0 - return this.filter( isHiddenWithinTree ).css( "opacity", 0 ).show() - - // Animate to the value specified - .end().animate( { opacity: to }, speed, easing, callback ); - }, - animate: function( prop, speed, easing, callback ) { - var empty = jQuery.isEmptyObject( prop ), - optall = jQuery.speed( speed, easing, callback ), - doAnimation = function() { - - // Operate on a copy of prop so per-property easing won't be lost - var anim = Animation( this, jQuery.extend( {}, prop ), optall ); - - // Empty animations, or finishing resolves immediately - if ( empty || dataPriv.get( this, "finish" ) ) { - anim.stop( true ); - } - }; - doAnimation.finish = doAnimation; - - return empty || optall.queue === false ? - this.each( doAnimation ) : - this.queue( optall.queue, doAnimation ); - }, - stop: function( type, clearQueue, gotoEnd ) { - var stopQueue = function( hooks ) { - var stop = hooks.stop; - delete hooks.stop; - stop( gotoEnd ); - }; - - if ( typeof type !== "string" ) { - gotoEnd = clearQueue; - clearQueue = type; - type = undefined; - } - if ( clearQueue ) { - this.queue( type || "fx", [] ); - } - - return this.each( function() { - var dequeue = true, - index = type != null && type + "queueHooks", - timers = jQuery.timers, - data = dataPriv.get( this ); - - if ( index ) { - if ( data[ index ] && data[ index ].stop ) { - stopQueue( data[ index ] ); - } - } else { - for ( index in data ) { - if ( data[ index ] && data[ index ].stop && rrun.test( index ) ) { - stopQueue( data[ index ] ); - } - } - } - - for ( index = timers.length; index--; ) { - if ( timers[ index ].elem === this && - ( type == null || timers[ index ].queue === type ) ) { - - timers[ index ].anim.stop( gotoEnd ); - dequeue = false; - timers.splice( index, 1 ); - } - } - - // Start the next in the queue if the last step wasn't forced. - // Timers currently will call their complete callbacks, which - // will dequeue but only if they were gotoEnd. - if ( dequeue || !gotoEnd ) { - jQuery.dequeue( this, type ); - } - } ); - }, - finish: function( type ) { - if ( type !== false ) { - type = type || "fx"; - } - return this.each( function() { - var index, - data = dataPriv.get( this ), - queue = data[ type + "queue" ], - hooks = data[ type + "queueHooks" ], - timers = jQuery.timers, - length = queue ? queue.length : 0; - - // Enable finishing flag on private data - data.finish = true; - - // Empty the queue first - jQuery.queue( this, type, [] ); - - if ( hooks && hooks.stop ) { - hooks.stop.call( this, true ); - } - - // Look for any active animations, and finish them - for ( index = timers.length; index--; ) { - if ( timers[ index ].elem === this && timers[ index ].queue === type ) { - timers[ index ].anim.stop( true ); - timers.splice( index, 1 ); - } - } - - // Look for any animations in the old queue and finish them - for ( index = 0; index < length; index++ ) { - if ( queue[ index ] && queue[ index ].finish ) { - queue[ index ].finish.call( this ); - } - } - - // Turn off finishing flag - delete data.finish; - } ); - } -} ); - -jQuery.each( [ "toggle", "show", "hide" ], function( _i, name ) { - var cssFn = jQuery.fn[ name ]; - jQuery.fn[ name ] = function( speed, easing, callback ) { - return speed == null || typeof speed === "boolean" ? - cssFn.apply( this, arguments ) : - this.animate( genFx( name, true ), speed, easing, callback ); - }; -} ); - -// Generate shortcuts for custom animations -jQuery.each( { - slideDown: genFx( "show" ), - slideUp: genFx( "hide" ), - slideToggle: genFx( "toggle" ), - fadeIn: { opacity: "show" }, - fadeOut: { opacity: "hide" }, - fadeToggle: { opacity: "toggle" } -}, function( name, props ) { - jQuery.fn[ name ] = function( speed, easing, callback ) { - return this.animate( props, speed, easing, callback ); - }; -} ); - -jQuery.timers = []; -jQuery.fx.tick = function() { - var timer, - i = 0, - timers = jQuery.timers; - - fxNow = Date.now(); - - for ( ; i < timers.length; i++ ) { - timer = timers[ i ]; - - // Run the timer and safely remove it when done (allowing for external removal) - if ( !timer() && timers[ i ] === timer ) { - timers.splice( i--, 1 ); - } - } - - if ( !timers.length ) { - jQuery.fx.stop(); - } - fxNow = undefined; -}; - -jQuery.fx.timer = function( timer ) { - jQuery.timers.push( timer ); - jQuery.fx.start(); -}; - -jQuery.fx.interval = 13; -jQuery.fx.start = function() { - if ( inProgress ) { - return; - } - - inProgress = true; - schedule(); -}; - -jQuery.fx.stop = function() { - inProgress = null; -}; - -jQuery.fx.speeds = { - slow: 600, - fast: 200, - - // Default speed - _default: 400 -}; - - -// Based off of the plugin by Clint Helfers, with permission. -// https://web.archive.org/web/20100324014747/http://blindsignals.com/index.php/2009/07/jquery-delay/ -jQuery.fn.delay = function( time, type ) { - time = jQuery.fx ? jQuery.fx.speeds[ time ] || time : time; - type = type || "fx"; - - return this.queue( type, function( next, hooks ) { - var timeout = window.setTimeout( next, time ); - hooks.stop = function() { - window.clearTimeout( timeout ); - }; - } ); -}; - - -( function() { - var input = document.createElement( "input" ), - select = document.createElement( "select" ), - opt = select.appendChild( document.createElement( "option" ) ); - - input.type = "checkbox"; - - // Support: Android <=4.3 only - // Default value for a checkbox should be "on" - support.checkOn = input.value !== ""; - - // Support: IE <=11 only - // Must access selectedIndex to make default options select - support.optSelected = opt.selected; - - // Support: IE <=11 only - // An input loses its value after becoming a radio - input = document.createElement( "input" ); - input.value = "t"; - input.type = "radio"; - support.radioValue = input.value === "t"; -} )(); - - -var boolHook, - attrHandle = jQuery.expr.attrHandle; - -jQuery.fn.extend( { - attr: function( name, value ) { - return access( this, jQuery.attr, name, value, arguments.length > 1 ); - }, - - removeAttr: function( name ) { - return this.each( function() { - jQuery.removeAttr( this, name ); - } ); - } -} ); - -jQuery.extend( { - attr: function( elem, name, value ) { - var ret, hooks, - nType = elem.nodeType; - - // Don't get/set attributes on text, comment and attribute nodes - if ( nType === 3 || nType === 8 || nType === 2 ) { - return; - } - - // Fallback to prop when attributes are not supported - if ( typeof elem.getAttribute === "undefined" ) { - return jQuery.prop( elem, name, value ); - } - - // Attribute hooks are determined by the lowercase version - // Grab necessary hook if one is defined - if ( nType !== 1 || !jQuery.isXMLDoc( elem ) ) { - hooks = jQuery.attrHooks[ name.toLowerCase() ] || - ( jQuery.expr.match.bool.test( name ) ? boolHook : undefined ); - } - - if ( value !== undefined ) { - if ( value === null ) { - jQuery.removeAttr( elem, name ); - return; - } - - if ( hooks && "set" in hooks && - ( ret = hooks.set( elem, value, name ) ) !== undefined ) { - return ret; - } - - elem.setAttribute( name, value + "" ); - return value; - } - - if ( hooks && "get" in hooks && ( ret = hooks.get( elem, name ) ) !== null ) { - return ret; - } - - ret = jQuery.find.attr( elem, name ); - - // Non-existent attributes return null, we normalize to undefined - return ret == null ? undefined : ret; - }, - - attrHooks: { - type: { - set: function( elem, value ) { - if ( !support.radioValue && value === "radio" && - nodeName( elem, "input" ) ) { - var val = elem.value; - elem.setAttribute( "type", value ); - if ( val ) { - elem.value = val; - } - return value; - } - } - } - }, - - removeAttr: function( elem, value ) { - var name, - i = 0, - - // Attribute names can contain non-HTML whitespace characters - // https://html.spec.whatwg.org/multipage/syntax.html#attributes-2 - attrNames = value && value.match( rnothtmlwhite ); - - if ( attrNames && elem.nodeType === 1 ) { - while ( ( name = attrNames[ i++ ] ) ) { - elem.removeAttribute( name ); - } - } - } -} ); - -// Hooks for boolean attributes -boolHook = { - set: function( elem, value, name ) { - if ( value === false ) { - - // Remove boolean attributes when set to false - jQuery.removeAttr( elem, name ); - } else { - elem.setAttribute( name, name ); - } - return name; - } -}; - -jQuery.each( jQuery.expr.match.bool.source.match( /\w+/g ), function( _i, name ) { - var getter = attrHandle[ name ] || jQuery.find.attr; - - attrHandle[ name ] = function( elem, name, isXML ) { - var ret, handle, - lowercaseName = name.toLowerCase(); - - if ( !isXML ) { - - // Avoid an infinite loop by temporarily removing this function from the getter - handle = attrHandle[ lowercaseName ]; - attrHandle[ lowercaseName ] = ret; - ret = getter( elem, name, isXML ) != null ? - lowercaseName : - null; - attrHandle[ lowercaseName ] = handle; - } - return ret; - }; -} ); - - - - -var rfocusable = /^(?:input|select|textarea|button)$/i, - rclickable = /^(?:a|area)$/i; - -jQuery.fn.extend( { - prop: function( name, value ) { - return access( this, jQuery.prop, name, value, arguments.length > 1 ); - }, - - removeProp: function( name ) { - return this.each( function() { - delete this[ jQuery.propFix[ name ] || name ]; - } ); - } -} ); - -jQuery.extend( { - prop: function( elem, name, value ) { - var ret, hooks, - nType = elem.nodeType; - - // Don't get/set properties on text, comment and attribute nodes - if ( nType === 3 || nType === 8 || nType === 2 ) { - return; - } - - if ( nType !== 1 || !jQuery.isXMLDoc( elem ) ) { - - // Fix name and attach hooks - name = jQuery.propFix[ name ] || name; - hooks = jQuery.propHooks[ name ]; - } - - if ( value !== undefined ) { - if ( hooks && "set" in hooks && - ( ret = hooks.set( elem, value, name ) ) !== undefined ) { - return ret; - } - - return ( elem[ name ] = value ); - } - - if ( hooks && "get" in hooks && ( ret = hooks.get( elem, name ) ) !== null ) { - return ret; - } - - return elem[ name ]; - }, - - propHooks: { - tabIndex: { - get: function( elem ) { - - // Support: IE <=9 - 11 only - // elem.tabIndex doesn't always return the - // correct value when it hasn't been explicitly set - // https://web.archive.org/web/20141116233347/http://fluidproject.org/blog/2008/01/09/getting-setting-and-removing-tabindex-values-with-javascript/ - // Use proper attribute retrieval(#12072) - var tabindex = jQuery.find.attr( elem, "tabindex" ); - - if ( tabindex ) { - return parseInt( tabindex, 10 ); - } - - if ( - rfocusable.test( elem.nodeName ) || - rclickable.test( elem.nodeName ) && - elem.href - ) { - return 0; - } - - return -1; - } - } - }, - - propFix: { - "for": "htmlFor", - "class": "className" - } -} ); - -// Support: IE <=11 only -// Accessing the selectedIndex property -// forces the browser to respect setting selected -// on the option -// The getter ensures a default option is selected -// when in an optgroup -// eslint rule "no-unused-expressions" is disabled for this code -// since it considers such accessions noop -if ( !support.optSelected ) { - jQuery.propHooks.selected = { - get: function( elem ) { - - /* eslint no-unused-expressions: "off" */ - - var parent = elem.parentNode; - if ( parent && parent.parentNode ) { - parent.parentNode.selectedIndex; - } - return null; - }, - set: function( elem ) { - - /* eslint no-unused-expressions: "off" */ - - var parent = elem.parentNode; - if ( parent ) { - parent.selectedIndex; - - if ( parent.parentNode ) { - parent.parentNode.selectedIndex; - } - } - } - }; -} - -jQuery.each( [ - "tabIndex", - "readOnly", - "maxLength", - "cellSpacing", - "cellPadding", - "rowSpan", - "colSpan", - "useMap", - "frameBorder", - "contentEditable" -], function() { - jQuery.propFix[ this.toLowerCase() ] = this; -} ); - - - - - // Strip and collapse whitespace according to HTML spec - // https://infra.spec.whatwg.org/#strip-and-collapse-ascii-whitespace - function stripAndCollapse( value ) { - var tokens = value.match( rnothtmlwhite ) || []; - return tokens.join( " " ); - } - - -function getClass( elem ) { - return elem.getAttribute && elem.getAttribute( "class" ) || ""; -} - -function classesToArray( value ) { - if ( Array.isArray( value ) ) { - return value; - } - if ( typeof value === "string" ) { - return value.match( rnothtmlwhite ) || []; - } - return []; -} - -jQuery.fn.extend( { - addClass: function( value ) { - var classes, elem, cur, curValue, clazz, j, finalValue, - i = 0; - - if ( isFunction( value ) ) { - return this.each( function( j ) { - jQuery( this ).addClass( value.call( this, j, getClass( this ) ) ); - } ); - } - - classes = classesToArray( value ); - - if ( classes.length ) { - while ( ( elem = this[ i++ ] ) ) { - curValue = getClass( elem ); - cur = elem.nodeType === 1 && ( " " + stripAndCollapse( curValue ) + " " ); - - if ( cur ) { - j = 0; - while ( ( clazz = classes[ j++ ] ) ) { - if ( cur.indexOf( " " + clazz + " " ) < 0 ) { - cur += clazz + " "; - } - } - - // Only assign if different to avoid unneeded rendering. - finalValue = stripAndCollapse( cur ); - if ( curValue !== finalValue ) { - elem.setAttribute( "class", finalValue ); - } - } - } - } - - return this; - }, - - removeClass: function( value ) { - var classes, elem, cur, curValue, clazz, j, finalValue, - i = 0; - - if ( isFunction( value ) ) { - return this.each( function( j ) { - jQuery( this ).removeClass( value.call( this, j, getClass( this ) ) ); - } ); - } - - if ( !arguments.length ) { - return this.attr( "class", "" ); - } - - classes = classesToArray( value ); - - if ( classes.length ) { - while ( ( elem = this[ i++ ] ) ) { - curValue = getClass( elem ); - - // This expression is here for better compressibility (see addClass) - cur = elem.nodeType === 1 && ( " " + stripAndCollapse( curValue ) + " " ); - - if ( cur ) { - j = 0; - while ( ( clazz = classes[ j++ ] ) ) { - - // Remove *all* instances - while ( cur.indexOf( " " + clazz + " " ) > -1 ) { - cur = cur.replace( " " + clazz + " ", " " ); - } - } - - // Only assign if different to avoid unneeded rendering. - finalValue = stripAndCollapse( cur ); - if ( curValue !== finalValue ) { - elem.setAttribute( "class", finalValue ); - } - } - } - } - - return this; - }, - - toggleClass: function( value, stateVal ) { - var type = typeof value, - isValidValue = type === "string" || Array.isArray( value ); - - if ( typeof stateVal === "boolean" && isValidValue ) { - return stateVal ? this.addClass( value ) : this.removeClass( value ); - } - - if ( isFunction( value ) ) { - return this.each( function( i ) { - jQuery( this ).toggleClass( - value.call( this, i, getClass( this ), stateVal ), - stateVal - ); - } ); - } - - return this.each( function() { - var className, i, self, classNames; - - if ( isValidValue ) { - - // Toggle individual class names - i = 0; - self = jQuery( this ); - classNames = classesToArray( value ); - - while ( ( className = classNames[ i++ ] ) ) { - - // Check each className given, space separated list - if ( self.hasClass( className ) ) { - self.removeClass( className ); - } else { - self.addClass( className ); - } - } - - // Toggle whole class name - } else if ( value === undefined || type === "boolean" ) { - className = getClass( this ); - if ( className ) { - - // Store className if set - dataPriv.set( this, "__className__", className ); - } - - // If the element has a class name or if we're passed `false`, - // then remove the whole classname (if there was one, the above saved it). - // Otherwise bring back whatever was previously saved (if anything), - // falling back to the empty string if nothing was stored. - if ( this.setAttribute ) { - this.setAttribute( "class", - className || value === false ? - "" : - dataPriv.get( this, "__className__" ) || "" - ); - } - } - } ); - }, - - hasClass: function( selector ) { - var className, elem, - i = 0; - - className = " " + selector + " "; - while ( ( elem = this[ i++ ] ) ) { - if ( elem.nodeType === 1 && - ( " " + stripAndCollapse( getClass( elem ) ) + " " ).indexOf( className ) > -1 ) { - return true; - } - } - - return false; - } -} ); - - - - -var rreturn = /\r/g; - -jQuery.fn.extend( { - val: function( value ) { - var hooks, ret, valueIsFunction, - elem = this[ 0 ]; - - if ( !arguments.length ) { - if ( elem ) { - hooks = jQuery.valHooks[ elem.type ] || - jQuery.valHooks[ elem.nodeName.toLowerCase() ]; - - if ( hooks && - "get" in hooks && - ( ret = hooks.get( elem, "value" ) ) !== undefined - ) { - return ret; - } - - ret = elem.value; - - // Handle most common string cases - if ( typeof ret === "string" ) { - return ret.replace( rreturn, "" ); - } - - // Handle cases where value is null/undef or number - return ret == null ? "" : ret; - } - - return; - } - - valueIsFunction = isFunction( value ); - - return this.each( function( i ) { - var val; - - if ( this.nodeType !== 1 ) { - return; - } - - if ( valueIsFunction ) { - val = value.call( this, i, jQuery( this ).val() ); - } else { - val = value; - } - - // Treat null/undefined as ""; convert numbers to string - if ( val == null ) { - val = ""; - - } else if ( typeof val === "number" ) { - val += ""; - - } else if ( Array.isArray( val ) ) { - val = jQuery.map( val, function( value ) { - return value == null ? "" : value + ""; - } ); - } - - hooks = jQuery.valHooks[ this.type ] || jQuery.valHooks[ this.nodeName.toLowerCase() ]; - - // If set returns undefined, fall back to normal setting - if ( !hooks || !( "set" in hooks ) || hooks.set( this, val, "value" ) === undefined ) { - this.value = val; - } - } ); - } -} ); - -jQuery.extend( { - valHooks: { - option: { - get: function( elem ) { - - var val = jQuery.find.attr( elem, "value" ); - return val != null ? - val : - - // Support: IE <=10 - 11 only - // option.text throws exceptions (#14686, #14858) - // Strip and collapse whitespace - // https://html.spec.whatwg.org/#strip-and-collapse-whitespace - stripAndCollapse( jQuery.text( elem ) ); - } - }, - select: { - get: function( elem ) { - var value, option, i, - options = elem.options, - index = elem.selectedIndex, - one = elem.type === "select-one", - values = one ? null : [], - max = one ? index + 1 : options.length; - - if ( index < 0 ) { - i = max; - - } else { - i = one ? index : 0; - } - - // Loop through all the selected options - for ( ; i < max; i++ ) { - option = options[ i ]; - - // Support: IE <=9 only - // IE8-9 doesn't update selected after form reset (#2551) - if ( ( option.selected || i === index ) && - - // Don't return options that are disabled or in a disabled optgroup - !option.disabled && - ( !option.parentNode.disabled || - !nodeName( option.parentNode, "optgroup" ) ) ) { - - // Get the specific value for the option - value = jQuery( option ).val(); - - // We don't need an array for one selects - if ( one ) { - return value; - } - - // Multi-Selects return an array - values.push( value ); - } - } - - return values; - }, - - set: function( elem, value ) { - var optionSet, option, - options = elem.options, - values = jQuery.makeArray( value ), - i = options.length; - - while ( i-- ) { - option = options[ i ]; - - /* eslint-disable no-cond-assign */ - - if ( option.selected = - jQuery.inArray( jQuery.valHooks.option.get( option ), values ) > -1 - ) { - optionSet = true; - } - - /* eslint-enable no-cond-assign */ - } - - // Force browsers to behave consistently when non-matching value is set - if ( !optionSet ) { - elem.selectedIndex = -1; - } - return values; - } - } - } -} ); - -// Radios and checkboxes getter/setter -jQuery.each( [ "radio", "checkbox" ], function() { - jQuery.valHooks[ this ] = { - set: function( elem, value ) { - if ( Array.isArray( value ) ) { - return ( elem.checked = jQuery.inArray( jQuery( elem ).val(), value ) > -1 ); - } - } - }; - if ( !support.checkOn ) { - jQuery.valHooks[ this ].get = function( elem ) { - return elem.getAttribute( "value" ) === null ? "on" : elem.value; - }; - } -} ); - - - - -// Return jQuery for attributes-only inclusion - - -support.focusin = "onfocusin" in window; - - -var rfocusMorph = /^(?:focusinfocus|focusoutblur)$/, - stopPropagationCallback = function( e ) { - e.stopPropagation(); - }; - -jQuery.extend( jQuery.event, { - - trigger: function( event, data, elem, onlyHandlers ) { - - var i, cur, tmp, bubbleType, ontype, handle, special, lastElement, - eventPath = [ elem || document ], - type = hasOwn.call( event, "type" ) ? event.type : event, - namespaces = hasOwn.call( event, "namespace" ) ? event.namespace.split( "." ) : []; - - cur = lastElement = tmp = elem = elem || document; - - // Don't do events on text and comment nodes - if ( elem.nodeType === 3 || elem.nodeType === 8 ) { - return; - } - - // focus/blur morphs to focusin/out; ensure we're not firing them right now - if ( rfocusMorph.test( type + jQuery.event.triggered ) ) { - return; - } - - if ( type.indexOf( "." ) > -1 ) { - - // Namespaced trigger; create a regexp to match event type in handle() - namespaces = type.split( "." ); - type = namespaces.shift(); - namespaces.sort(); - } - ontype = type.indexOf( ":" ) < 0 && "on" + type; - - // Caller can pass in a jQuery.Event object, Object, or just an event type string - event = event[ jQuery.expando ] ? - event : - new jQuery.Event( type, typeof event === "object" && event ); - - // Trigger bitmask: & 1 for native handlers; & 2 for jQuery (always true) - event.isTrigger = onlyHandlers ? 2 : 3; - event.namespace = namespaces.join( "." ); - event.rnamespace = event.namespace ? - new RegExp( "(^|\\.)" + namespaces.join( "\\.(?:.*\\.|)" ) + "(\\.|$)" ) : - null; - - // Clean up the event in case it is being reused - event.result = undefined; - if ( !event.target ) { - event.target = elem; - } - - // Clone any incoming data and prepend the event, creating the handler arg list - data = data == null ? - [ event ] : - jQuery.makeArray( data, [ event ] ); - - // Allow special events to draw outside the lines - special = jQuery.event.special[ type ] || {}; - if ( !onlyHandlers && special.trigger && special.trigger.apply( elem, data ) === false ) { - return; - } - - // Determine event propagation path in advance, per W3C events spec (#9951) - // Bubble up to document, then to window; watch for a global ownerDocument var (#9724) - if ( !onlyHandlers && !special.noBubble && !isWindow( elem ) ) { - - bubbleType = special.delegateType || type; - if ( !rfocusMorph.test( bubbleType + type ) ) { - cur = cur.parentNode; - } - for ( ; cur; cur = cur.parentNode ) { - eventPath.push( cur ); - tmp = cur; - } - - // Only add window if we got to document (e.g., not plain obj or detached DOM) - if ( tmp === ( elem.ownerDocument || document ) ) { - eventPath.push( tmp.defaultView || tmp.parentWindow || window ); - } - } - - // Fire handlers on the event path - i = 0; - while ( ( cur = eventPath[ i++ ] ) && !event.isPropagationStopped() ) { - lastElement = cur; - event.type = i > 1 ? - bubbleType : - special.bindType || type; - - // jQuery handler - handle = ( - dataPriv.get( cur, "events" ) || Object.create( null ) - )[ event.type ] && - dataPriv.get( cur, "handle" ); - if ( handle ) { - handle.apply( cur, data ); - } - - // Native handler - handle = ontype && cur[ ontype ]; - if ( handle && handle.apply && acceptData( cur ) ) { - event.result = handle.apply( cur, data ); - if ( event.result === false ) { - event.preventDefault(); - } - } - } - event.type = type; - - // If nobody prevented the default action, do it now - if ( !onlyHandlers && !event.isDefaultPrevented() ) { - - if ( ( !special._default || - special._default.apply( eventPath.pop(), data ) === false ) && - acceptData( elem ) ) { - - // Call a native DOM method on the target with the same name as the event. - // Don't do default actions on window, that's where global variables be (#6170) - if ( ontype && isFunction( elem[ type ] ) && !isWindow( elem ) ) { - - // Don't re-trigger an onFOO event when we call its FOO() method - tmp = elem[ ontype ]; - - if ( tmp ) { - elem[ ontype ] = null; - } - - // Prevent re-triggering of the same event, since we already bubbled it above - jQuery.event.triggered = type; - - if ( event.isPropagationStopped() ) { - lastElement.addEventListener( type, stopPropagationCallback ); - } - - elem[ type ](); - - if ( event.isPropagationStopped() ) { - lastElement.removeEventListener( type, stopPropagationCallback ); - } - - jQuery.event.triggered = undefined; - - if ( tmp ) { - elem[ ontype ] = tmp; - } - } - } - } - - return event.result; - }, - - // Piggyback on a donor event to simulate a different one - // Used only for `focus(in | out)` events - simulate: function( type, elem, event ) { - var e = jQuery.extend( - new jQuery.Event(), - event, - { - type: type, - isSimulated: true - } - ); - - jQuery.event.trigger( e, null, elem ); - } - -} ); - -jQuery.fn.extend( { - - trigger: function( type, data ) { - return this.each( function() { - jQuery.event.trigger( type, data, this ); - } ); - }, - triggerHandler: function( type, data ) { - var elem = this[ 0 ]; - if ( elem ) { - return jQuery.event.trigger( type, data, elem, true ); - } - } -} ); - - -// Support: Firefox <=44 -// Firefox doesn't have focus(in | out) events -// Related ticket - https://bugzilla.mozilla.org/show_bug.cgi?id=687787 -// -// Support: Chrome <=48 - 49, Safari <=9.0 - 9.1 -// focus(in | out) events fire after focus & blur events, -// which is spec violation - http://www.w3.org/TR/DOM-Level-3-Events/#events-focusevent-event-order -// Related ticket - https://bugs.chromium.org/p/chromium/issues/detail?id=449857 -if ( !support.focusin ) { - jQuery.each( { focus: "focusin", blur: "focusout" }, function( orig, fix ) { - - // Attach a single capturing handler on the document while someone wants focusin/focusout - var handler = function( event ) { - jQuery.event.simulate( fix, event.target, jQuery.event.fix( event ) ); - }; - - jQuery.event.special[ fix ] = { - setup: function() { - - // Handle: regular nodes (via `this.ownerDocument`), window - // (via `this.document`) & document (via `this`). - var doc = this.ownerDocument || this.document || this, - attaches = dataPriv.access( doc, fix ); - - if ( !attaches ) { - doc.addEventListener( orig, handler, true ); - } - dataPriv.access( doc, fix, ( attaches || 0 ) + 1 ); - }, - teardown: function() { - var doc = this.ownerDocument || this.document || this, - attaches = dataPriv.access( doc, fix ) - 1; - - if ( !attaches ) { - doc.removeEventListener( orig, handler, true ); - dataPriv.remove( doc, fix ); - - } else { - dataPriv.access( doc, fix, attaches ); - } - } - }; - } ); -} -var location = window.location; - -var nonce = { guid: Date.now() }; - -var rquery = ( /\?/ ); - - - -// Cross-browser xml parsing -jQuery.parseXML = function( data ) { - var xml; - if ( !data || typeof data !== "string" ) { - return null; - } - - // Support: IE 9 - 11 only - // IE throws on parseFromString with invalid input. - try { - xml = ( new window.DOMParser() ).parseFromString( data, "text/xml" ); - } catch ( e ) { - xml = undefined; - } - - if ( !xml || xml.getElementsByTagName( "parsererror" ).length ) { - jQuery.error( "Invalid XML: " + data ); - } - return xml; -}; - - -var - rbracket = /\[\]$/, - rCRLF = /\r?\n/g, - rsubmitterTypes = /^(?:submit|button|image|reset|file)$/i, - rsubmittable = /^(?:input|select|textarea|keygen)/i; - -function buildParams( prefix, obj, traditional, add ) { - var name; - - if ( Array.isArray( obj ) ) { - - // Serialize array item. - jQuery.each( obj, function( i, v ) { - if ( traditional || rbracket.test( prefix ) ) { - - // Treat each array item as a scalar. - add( prefix, v ); - - } else { - - // Item is non-scalar (array or object), encode its numeric index. - buildParams( - prefix + "[" + ( typeof v === "object" && v != null ? i : "" ) + "]", - v, - traditional, - add - ); - } - } ); - - } else if ( !traditional && toType( obj ) === "object" ) { - - // Serialize object item. - for ( name in obj ) { - buildParams( prefix + "[" + name + "]", obj[ name ], traditional, add ); - } - - } else { - - // Serialize scalar item. - add( prefix, obj ); - } -} - -// Serialize an array of form elements or a set of -// key/values into a query string -jQuery.param = function( a, traditional ) { - var prefix, - s = [], - add = function( key, valueOrFunction ) { - - // If value is a function, invoke it and use its return value - var value = isFunction( valueOrFunction ) ? - valueOrFunction() : - valueOrFunction; - - s[ s.length ] = encodeURIComponent( key ) + "=" + - encodeURIComponent( value == null ? "" : value ); - }; - - if ( a == null ) { - return ""; - } - - // If an array was passed in, assume that it is an array of form elements. - if ( Array.isArray( a ) || ( a.jquery && !jQuery.isPlainObject( a ) ) ) { - - // Serialize the form elements - jQuery.each( a, function() { - add( this.name, this.value ); - } ); - - } else { - - // If traditional, encode the "old" way (the way 1.3.2 or older - // did it), otherwise encode params recursively. - for ( prefix in a ) { - buildParams( prefix, a[ prefix ], traditional, add ); - } - } - - // Return the resulting serialization - return s.join( "&" ); -}; - -jQuery.fn.extend( { - serialize: function() { - return jQuery.param( this.serializeArray() ); - }, - serializeArray: function() { - return this.map( function() { - - // Can add propHook for "elements" to filter or add form elements - var elements = jQuery.prop( this, "elements" ); - return elements ? jQuery.makeArray( elements ) : this; - } ) - .filter( function() { - var type = this.type; - - // Use .is( ":disabled" ) so that fieldset[disabled] works - return this.name && !jQuery( this ).is( ":disabled" ) && - rsubmittable.test( this.nodeName ) && !rsubmitterTypes.test( type ) && - ( this.checked || !rcheckableType.test( type ) ); - } ) - .map( function( _i, elem ) { - var val = jQuery( this ).val(); - - if ( val == null ) { - return null; - } - - if ( Array.isArray( val ) ) { - return jQuery.map( val, function( val ) { - return { name: elem.name, value: val.replace( rCRLF, "\r\n" ) }; - } ); - } - - return { name: elem.name, value: val.replace( rCRLF, "\r\n" ) }; - } ).get(); - } -} ); - - -var - r20 = /%20/g, - rhash = /#.*$/, - rantiCache = /([?&])_=[^&]*/, - rheaders = /^(.*?):[ \t]*([^\r\n]*)$/mg, - - // #7653, #8125, #8152: local protocol detection - rlocalProtocol = /^(?:about|app|app-storage|.+-extension|file|res|widget):$/, - rnoContent = /^(?:GET|HEAD)$/, - rprotocol = /^\/\//, - - /* Prefilters - * 1) They are useful to introduce custom dataTypes (see ajax/jsonp.js for an example) - * 2) These are called: - * - BEFORE asking for a transport - * - AFTER param serialization (s.data is a string if s.processData is true) - * 3) key is the dataType - * 4) the catchall symbol "*" can be used - * 5) execution will start with transport dataType and THEN continue down to "*" if needed - */ - prefilters = {}, - - /* Transports bindings - * 1) key is the dataType - * 2) the catchall symbol "*" can be used - * 3) selection will start with transport dataType and THEN go to "*" if needed - */ - transports = {}, - - // Avoid comment-prolog char sequence (#10098); must appease lint and evade compression - allTypes = "*/".concat( "*" ), - - // Anchor tag for parsing the document origin - originAnchor = document.createElement( "a" ); - originAnchor.href = location.href; - -// Base "constructor" for jQuery.ajaxPrefilter and jQuery.ajaxTransport -function addToPrefiltersOrTransports( structure ) { - - // dataTypeExpression is optional and defaults to "*" - return function( dataTypeExpression, func ) { - - if ( typeof dataTypeExpression !== "string" ) { - func = dataTypeExpression; - dataTypeExpression = "*"; - } - - var dataType, - i = 0, - dataTypes = dataTypeExpression.toLowerCase().match( rnothtmlwhite ) || []; - - if ( isFunction( func ) ) { - - // For each dataType in the dataTypeExpression - while ( ( dataType = dataTypes[ i++ ] ) ) { - - // Prepend if requested - if ( dataType[ 0 ] === "+" ) { - dataType = dataType.slice( 1 ) || "*"; - ( structure[ dataType ] = structure[ dataType ] || [] ).unshift( func ); - - // Otherwise append - } else { - ( structure[ dataType ] = structure[ dataType ] || [] ).push( func ); - } - } - } - }; -} - -// Base inspection function for prefilters and transports -function inspectPrefiltersOrTransports( structure, options, originalOptions, jqXHR ) { - - var inspected = {}, - seekingTransport = ( structure === transports ); - - function inspect( dataType ) { - var selected; - inspected[ dataType ] = true; - jQuery.each( structure[ dataType ] || [], function( _, prefilterOrFactory ) { - var dataTypeOrTransport = prefilterOrFactory( options, originalOptions, jqXHR ); - if ( typeof dataTypeOrTransport === "string" && - !seekingTransport && !inspected[ dataTypeOrTransport ] ) { - - options.dataTypes.unshift( dataTypeOrTransport ); - inspect( dataTypeOrTransport ); - return false; - } else if ( seekingTransport ) { - return !( selected = dataTypeOrTransport ); - } - } ); - return selected; - } - - return inspect( options.dataTypes[ 0 ] ) || !inspected[ "*" ] && inspect( "*" ); -} - -// A special extend for ajax options -// that takes "flat" options (not to be deep extended) -// Fixes #9887 -function ajaxExtend( target, src ) { - var key, deep, - flatOptions = jQuery.ajaxSettings.flatOptions || {}; - - for ( key in src ) { - if ( src[ key ] !== undefined ) { - ( flatOptions[ key ] ? target : ( deep || ( deep = {} ) ) )[ key ] = src[ key ]; - } - } - if ( deep ) { - jQuery.extend( true, target, deep ); - } - - return target; -} - -/* Handles responses to an ajax request: - * - finds the right dataType (mediates between content-type and expected dataType) - * - returns the corresponding response - */ -function ajaxHandleResponses( s, jqXHR, responses ) { - - var ct, type, finalDataType, firstDataType, - contents = s.contents, - dataTypes = s.dataTypes; - - // Remove auto dataType and get content-type in the process - while ( dataTypes[ 0 ] === "*" ) { - dataTypes.shift(); - if ( ct === undefined ) { - ct = s.mimeType || jqXHR.getResponseHeader( "Content-Type" ); - } - } - - // Check if we're dealing with a known content-type - if ( ct ) { - for ( type in contents ) { - if ( contents[ type ] && contents[ type ].test( ct ) ) { - dataTypes.unshift( type ); - break; - } - } - } - - // Check to see if we have a response for the expected dataType - if ( dataTypes[ 0 ] in responses ) { - finalDataType = dataTypes[ 0 ]; - } else { - - // Try convertible dataTypes - for ( type in responses ) { - if ( !dataTypes[ 0 ] || s.converters[ type + " " + dataTypes[ 0 ] ] ) { - finalDataType = type; - break; - } - if ( !firstDataType ) { - firstDataType = type; - } - } - - // Or just use first one - finalDataType = finalDataType || firstDataType; - } - - // If we found a dataType - // We add the dataType to the list if needed - // and return the corresponding response - if ( finalDataType ) { - if ( finalDataType !== dataTypes[ 0 ] ) { - dataTypes.unshift( finalDataType ); - } - return responses[ finalDataType ]; - } -} - -/* Chain conversions given the request and the original response - * Also sets the responseXXX fields on the jqXHR instance - */ -function ajaxConvert( s, response, jqXHR, isSuccess ) { - var conv2, current, conv, tmp, prev, - converters = {}, - - // Work with a copy of dataTypes in case we need to modify it for conversion - dataTypes = s.dataTypes.slice(); - - // Create converters map with lowercased keys - if ( dataTypes[ 1 ] ) { - for ( conv in s.converters ) { - converters[ conv.toLowerCase() ] = s.converters[ conv ]; - } - } - - current = dataTypes.shift(); - - // Convert to each sequential dataType - while ( current ) { - - if ( s.responseFields[ current ] ) { - jqXHR[ s.responseFields[ current ] ] = response; - } - - // Apply the dataFilter if provided - if ( !prev && isSuccess && s.dataFilter ) { - response = s.dataFilter( response, s.dataType ); - } - - prev = current; - current = dataTypes.shift(); - - if ( current ) { - - // There's only work to do if current dataType is non-auto - if ( current === "*" ) { - - current = prev; - - // Convert response if prev dataType is non-auto and differs from current - } else if ( prev !== "*" && prev !== current ) { - - // Seek a direct converter - conv = converters[ prev + " " + current ] || converters[ "* " + current ]; - - // If none found, seek a pair - if ( !conv ) { - for ( conv2 in converters ) { - - // If conv2 outputs current - tmp = conv2.split( " " ); - if ( tmp[ 1 ] === current ) { - - // If prev can be converted to accepted input - conv = converters[ prev + " " + tmp[ 0 ] ] || - converters[ "* " + tmp[ 0 ] ]; - if ( conv ) { - - // Condense equivalence converters - if ( conv === true ) { - conv = converters[ conv2 ]; - - // Otherwise, insert the intermediate dataType - } else if ( converters[ conv2 ] !== true ) { - current = tmp[ 0 ]; - dataTypes.unshift( tmp[ 1 ] ); - } - break; - } - } - } - } - - // Apply converter (if not an equivalence) - if ( conv !== true ) { - - // Unless errors are allowed to bubble, catch and return them - if ( conv && s.throws ) { - response = conv( response ); - } else { - try { - response = conv( response ); - } catch ( e ) { - return { - state: "parsererror", - error: conv ? e : "No conversion from " + prev + " to " + current - }; - } - } - } - } - } - } - - return { state: "success", data: response }; -} - -jQuery.extend( { - - // Counter for holding the number of active queries - active: 0, - - // Last-Modified header cache for next request - lastModified: {}, - etag: {}, - - ajaxSettings: { - url: location.href, - type: "GET", - isLocal: rlocalProtocol.test( location.protocol ), - global: true, - processData: true, - async: true, - contentType: "application/x-www-form-urlencoded; charset=UTF-8", - - /* - timeout: 0, - data: null, - dataType: null, - username: null, - password: null, - cache: null, - throws: false, - traditional: false, - headers: {}, - */ - - accepts: { - "*": allTypes, - text: "text/plain", - html: "text/html", - xml: "application/xml, text/xml", - json: "application/json, text/javascript" - }, - - contents: { - xml: /\bxml\b/, - html: /\bhtml/, - json: /\bjson\b/ - }, - - responseFields: { - xml: "responseXML", - text: "responseText", - json: "responseJSON" - }, - - // Data converters - // Keys separate source (or catchall "*") and destination types with a single space - converters: { - - // Convert anything to text - "* text": String, - - // Text to html (true = no transformation) - "text html": true, - - // Evaluate text as a json expression - "text json": JSON.parse, - - // Parse text as xml - "text xml": jQuery.parseXML - }, - - // For options that shouldn't be deep extended: - // you can add your own custom options here if - // and when you create one that shouldn't be - // deep extended (see ajaxExtend) - flatOptions: { - url: true, - context: true - } - }, - - // Creates a full fledged settings object into target - // with both ajaxSettings and settings fields. - // If target is omitted, writes into ajaxSettings. - ajaxSetup: function( target, settings ) { - return settings ? - - // Building a settings object - ajaxExtend( ajaxExtend( target, jQuery.ajaxSettings ), settings ) : - - // Extending ajaxSettings - ajaxExtend( jQuery.ajaxSettings, target ); - }, - - ajaxPrefilter: addToPrefiltersOrTransports( prefilters ), - ajaxTransport: addToPrefiltersOrTransports( transports ), - - // Main method - ajax: function( url, options ) { - - // If url is an object, simulate pre-1.5 signature - if ( typeof url === "object" ) { - options = url; - url = undefined; - } - - // Force options to be an object - options = options || {}; - - var transport, - - // URL without anti-cache param - cacheURL, - - // Response headers - responseHeadersString, - responseHeaders, - - // timeout handle - timeoutTimer, - - // Url cleanup var - urlAnchor, - - // Request state (becomes false upon send and true upon completion) - completed, - - // To know if global events are to be dispatched - fireGlobals, - - // Loop variable - i, - - // uncached part of the url - uncached, - - // Create the final options object - s = jQuery.ajaxSetup( {}, options ), - - // Callbacks context - callbackContext = s.context || s, - - // Context for global events is callbackContext if it is a DOM node or jQuery collection - globalEventContext = s.context && - ( callbackContext.nodeType || callbackContext.jquery ) ? - jQuery( callbackContext ) : - jQuery.event, - - // Deferreds - deferred = jQuery.Deferred(), - completeDeferred = jQuery.Callbacks( "once memory" ), - - // Status-dependent callbacks - statusCode = s.statusCode || {}, - - // Headers (they are sent all at once) - requestHeaders = {}, - requestHeadersNames = {}, - - // Default abort message - strAbort = "canceled", - - // Fake xhr - jqXHR = { - readyState: 0, - - // Builds headers hashtable if needed - getResponseHeader: function( key ) { - var match; - if ( completed ) { - if ( !responseHeaders ) { - responseHeaders = {}; - while ( ( match = rheaders.exec( responseHeadersString ) ) ) { - responseHeaders[ match[ 1 ].toLowerCase() + " " ] = - ( responseHeaders[ match[ 1 ].toLowerCase() + " " ] || [] ) - .concat( match[ 2 ] ); - } - } - match = responseHeaders[ key.toLowerCase() + " " ]; - } - return match == null ? null : match.join( ", " ); - }, - - // Raw string - getAllResponseHeaders: function() { - return completed ? responseHeadersString : null; - }, - - // Caches the header - setRequestHeader: function( name, value ) { - if ( completed == null ) { - name = requestHeadersNames[ name.toLowerCase() ] = - requestHeadersNames[ name.toLowerCase() ] || name; - requestHeaders[ name ] = value; - } - return this; - }, - - // Overrides response content-type header - overrideMimeType: function( type ) { - if ( completed == null ) { - s.mimeType = type; - } - return this; - }, - - // Status-dependent callbacks - statusCode: function( map ) { - var code; - if ( map ) { - if ( completed ) { - - // Execute the appropriate callbacks - jqXHR.always( map[ jqXHR.status ] ); - } else { - - // Lazy-add the new callbacks in a way that preserves old ones - for ( code in map ) { - statusCode[ code ] = [ statusCode[ code ], map[ code ] ]; - } - } - } - return this; - }, - - // Cancel the request - abort: function( statusText ) { - var finalText = statusText || strAbort; - if ( transport ) { - transport.abort( finalText ); - } - done( 0, finalText ); - return this; - } - }; - - // Attach deferreds - deferred.promise( jqXHR ); - - // Add protocol if not provided (prefilters might expect it) - // Handle falsy url in the settings object (#10093: consistency with old signature) - // We also use the url parameter if available - s.url = ( ( url || s.url || location.href ) + "" ) - .replace( rprotocol, location.protocol + "//" ); - - // Alias method option to type as per ticket #12004 - s.type = options.method || options.type || s.method || s.type; - - // Extract dataTypes list - s.dataTypes = ( s.dataType || "*" ).toLowerCase().match( rnothtmlwhite ) || [ "" ]; - - // A cross-domain request is in order when the origin doesn't match the current origin. - if ( s.crossDomain == null ) { - urlAnchor = document.createElement( "a" ); - - // Support: IE <=8 - 11, Edge 12 - 15 - // IE throws exception on accessing the href property if url is malformed, - // e.g. http://example.com:80x/ - try { - urlAnchor.href = s.url; - - // Support: IE <=8 - 11 only - // Anchor's host property isn't correctly set when s.url is relative - urlAnchor.href = urlAnchor.href; - s.crossDomain = originAnchor.protocol + "//" + originAnchor.host !== - urlAnchor.protocol + "//" + urlAnchor.host; - } catch ( e ) { - - // If there is an error parsing the URL, assume it is crossDomain, - // it can be rejected by the transport if it is invalid - s.crossDomain = true; - } - } - - // Convert data if not already a string - if ( s.data && s.processData && typeof s.data !== "string" ) { - s.data = jQuery.param( s.data, s.traditional ); - } - - // Apply prefilters - inspectPrefiltersOrTransports( prefilters, s, options, jqXHR ); - - // If request was aborted inside a prefilter, stop there - if ( completed ) { - return jqXHR; - } - - // We can fire global events as of now if asked to - // Don't fire events if jQuery.event is undefined in an AMD-usage scenario (#15118) - fireGlobals = jQuery.event && s.global; - - // Watch for a new set of requests - if ( fireGlobals && jQuery.active++ === 0 ) { - jQuery.event.trigger( "ajaxStart" ); - } - - // Uppercase the type - s.type = s.type.toUpperCase(); - - // Determine if request has content - s.hasContent = !rnoContent.test( s.type ); - - // Save the URL in case we're toying with the If-Modified-Since - // and/or If-None-Match header later on - // Remove hash to simplify url manipulation - cacheURL = s.url.replace( rhash, "" ); - - // More options handling for requests with no content - if ( !s.hasContent ) { - - // Remember the hash so we can put it back - uncached = s.url.slice( cacheURL.length ); - - // If data is available and should be processed, append data to url - if ( s.data && ( s.processData || typeof s.data === "string" ) ) { - cacheURL += ( rquery.test( cacheURL ) ? "&" : "?" ) + s.data; - - // #9682: remove data so that it's not used in an eventual retry - delete s.data; - } - - // Add or update anti-cache param if needed - if ( s.cache === false ) { - cacheURL = cacheURL.replace( rantiCache, "$1" ); - uncached = ( rquery.test( cacheURL ) ? "&" : "?" ) + "_=" + ( nonce.guid++ ) + - uncached; - } - - // Put hash and anti-cache on the URL that will be requested (gh-1732) - s.url = cacheURL + uncached; - - // Change '%20' to '+' if this is encoded form body content (gh-2658) - } else if ( s.data && s.processData && - ( s.contentType || "" ).indexOf( "application/x-www-form-urlencoded" ) === 0 ) { - s.data = s.data.replace( r20, "+" ); - } - - // Set the If-Modified-Since and/or If-None-Match header, if in ifModified mode. - if ( s.ifModified ) { - if ( jQuery.lastModified[ cacheURL ] ) { - jqXHR.setRequestHeader( "If-Modified-Since", jQuery.lastModified[ cacheURL ] ); - } - if ( jQuery.etag[ cacheURL ] ) { - jqXHR.setRequestHeader( "If-None-Match", jQuery.etag[ cacheURL ] ); - } - } - - // Set the correct header, if data is being sent - if ( s.data && s.hasContent && s.contentType !== false || options.contentType ) { - jqXHR.setRequestHeader( "Content-Type", s.contentType ); - } - - // Set the Accepts header for the server, depending on the dataType - jqXHR.setRequestHeader( - "Accept", - s.dataTypes[ 0 ] && s.accepts[ s.dataTypes[ 0 ] ] ? - s.accepts[ s.dataTypes[ 0 ] ] + - ( s.dataTypes[ 0 ] !== "*" ? ", " + allTypes + "; q=0.01" : "" ) : - s.accepts[ "*" ] - ); - - // Check for headers option - for ( i in s.headers ) { - jqXHR.setRequestHeader( i, s.headers[ i ] ); - } - - // Allow custom headers/mimetypes and early abort - if ( s.beforeSend && - ( s.beforeSend.call( callbackContext, jqXHR, s ) === false || completed ) ) { - - // Abort if not done already and return - return jqXHR.abort(); - } - - // Aborting is no longer a cancellation - strAbort = "abort"; - - // Install callbacks on deferreds - completeDeferred.add( s.complete ); - jqXHR.done( s.success ); - jqXHR.fail( s.error ); - - // Get transport - transport = inspectPrefiltersOrTransports( transports, s, options, jqXHR ); - - // If no transport, we auto-abort - if ( !transport ) { - done( -1, "No Transport" ); - } else { - jqXHR.readyState = 1; - - // Send global event - if ( fireGlobals ) { - globalEventContext.trigger( "ajaxSend", [ jqXHR, s ] ); - } - - // If request was aborted inside ajaxSend, stop there - if ( completed ) { - return jqXHR; - } - - // Timeout - if ( s.async && s.timeout > 0 ) { - timeoutTimer = window.setTimeout( function() { - jqXHR.abort( "timeout" ); - }, s.timeout ); - } - - try { - completed = false; - transport.send( requestHeaders, done ); - } catch ( e ) { - - // Rethrow post-completion exceptions - if ( completed ) { - throw e; - } - - // Propagate others as results - done( -1, e ); - } - } - - // Callback for when everything is done - function done( status, nativeStatusText, responses, headers ) { - var isSuccess, success, error, response, modified, - statusText = nativeStatusText; - - // Ignore repeat invocations - if ( completed ) { - return; - } - - completed = true; - - // Clear timeout if it exists - if ( timeoutTimer ) { - window.clearTimeout( timeoutTimer ); - } - - // Dereference transport for early garbage collection - // (no matter how long the jqXHR object will be used) - transport = undefined; - - // Cache response headers - responseHeadersString = headers || ""; - - // Set readyState - jqXHR.readyState = status > 0 ? 4 : 0; - - // Determine if successful - isSuccess = status >= 200 && status < 300 || status === 304; - - // Get response data - if ( responses ) { - response = ajaxHandleResponses( s, jqXHR, responses ); - } - - // Use a noop converter for missing script - if ( !isSuccess && jQuery.inArray( "script", s.dataTypes ) > -1 ) { - s.converters[ "text script" ] = function() {}; - } - - // Convert no matter what (that way responseXXX fields are always set) - response = ajaxConvert( s, response, jqXHR, isSuccess ); - - // If successful, handle type chaining - if ( isSuccess ) { - - // Set the If-Modified-Since and/or If-None-Match header, if in ifModified mode. - if ( s.ifModified ) { - modified = jqXHR.getResponseHeader( "Last-Modified" ); - if ( modified ) { - jQuery.lastModified[ cacheURL ] = modified; - } - modified = jqXHR.getResponseHeader( "etag" ); - if ( modified ) { - jQuery.etag[ cacheURL ] = modified; - } - } - - // if no content - if ( status === 204 || s.type === "HEAD" ) { - statusText = "nocontent"; - - // if not modified - } else if ( status === 304 ) { - statusText = "notmodified"; - - // If we have data, let's convert it - } else { - statusText = response.state; - success = response.data; - error = response.error; - isSuccess = !error; - } - } else { - - // Extract error from statusText and normalize for non-aborts - error = statusText; - if ( status || !statusText ) { - statusText = "error"; - if ( status < 0 ) { - status = 0; - } - } - } - - // Set data for the fake xhr object - jqXHR.status = status; - jqXHR.statusText = ( nativeStatusText || statusText ) + ""; - - // Success/Error - if ( isSuccess ) { - deferred.resolveWith( callbackContext, [ success, statusText, jqXHR ] ); - } else { - deferred.rejectWith( callbackContext, [ jqXHR, statusText, error ] ); - } - - // Status-dependent callbacks - jqXHR.statusCode( statusCode ); - statusCode = undefined; - - if ( fireGlobals ) { - globalEventContext.trigger( isSuccess ? "ajaxSuccess" : "ajaxError", - [ jqXHR, s, isSuccess ? success : error ] ); - } - - // Complete - completeDeferred.fireWith( callbackContext, [ jqXHR, statusText ] ); - - if ( fireGlobals ) { - globalEventContext.trigger( "ajaxComplete", [ jqXHR, s ] ); - - // Handle the global AJAX counter - if ( !( --jQuery.active ) ) { - jQuery.event.trigger( "ajaxStop" ); - } - } - } - - return jqXHR; - }, - - getJSON: function( url, data, callback ) { - return jQuery.get( url, data, callback, "json" ); - }, - - getScript: function( url, callback ) { - return jQuery.get( url, undefined, callback, "script" ); - } -} ); - -jQuery.each( [ "get", "post" ], function( _i, method ) { - jQuery[ method ] = function( url, data, callback, type ) { - - // Shift arguments if data argument was omitted - if ( isFunction( data ) ) { - type = type || callback; - callback = data; - data = undefined; - } - - // The url can be an options object (which then must have .url) - return jQuery.ajax( jQuery.extend( { - url: url, - type: method, - dataType: type, - data: data, - success: callback - }, jQuery.isPlainObject( url ) && url ) ); - }; -} ); - -jQuery.ajaxPrefilter( function( s ) { - var i; - for ( i in s.headers ) { - if ( i.toLowerCase() === "content-type" ) { - s.contentType = s.headers[ i ] || ""; - } - } -} ); - - -jQuery._evalUrl = function( url, options, doc ) { - return jQuery.ajax( { - url: url, - - // Make this explicit, since user can override this through ajaxSetup (#11264) - type: "GET", - dataType: "script", - cache: true, - async: false, - global: false, - - // Only evaluate the response if it is successful (gh-4126) - // dataFilter is not invoked for failure responses, so using it instead - // of the default converter is kludgy but it works. - converters: { - "text script": function() {} - }, - dataFilter: function( response ) { - jQuery.globalEval( response, options, doc ); - } - } ); -}; - - -jQuery.fn.extend( { - wrapAll: function( html ) { - var wrap; - - if ( this[ 0 ] ) { - if ( isFunction( html ) ) { - html = html.call( this[ 0 ] ); - } - - // The elements to wrap the target around - wrap = jQuery( html, this[ 0 ].ownerDocument ).eq( 0 ).clone( true ); - - if ( this[ 0 ].parentNode ) { - wrap.insertBefore( this[ 0 ] ); - } - - wrap.map( function() { - var elem = this; - - while ( elem.firstElementChild ) { - elem = elem.firstElementChild; - } - - return elem; - } ).append( this ); - } - - return this; - }, - - wrapInner: function( html ) { - if ( isFunction( html ) ) { - return this.each( function( i ) { - jQuery( this ).wrapInner( html.call( this, i ) ); - } ); - } - - return this.each( function() { - var self = jQuery( this ), - contents = self.contents(); - - if ( contents.length ) { - contents.wrapAll( html ); - - } else { - self.append( html ); - } - } ); - }, - - wrap: function( html ) { - var htmlIsFunction = isFunction( html ); - - return this.each( function( i ) { - jQuery( this ).wrapAll( htmlIsFunction ? html.call( this, i ) : html ); - } ); - }, - - unwrap: function( selector ) { - this.parent( selector ).not( "body" ).each( function() { - jQuery( this ).replaceWith( this.childNodes ); - } ); - return this; - } -} ); - - -jQuery.expr.pseudos.hidden = function( elem ) { - return !jQuery.expr.pseudos.visible( elem ); -}; -jQuery.expr.pseudos.visible = function( elem ) { - return !!( elem.offsetWidth || elem.offsetHeight || elem.getClientRects().length ); -}; - - - - -jQuery.ajaxSettings.xhr = function() { - try { - return new window.XMLHttpRequest(); - } catch ( e ) {} -}; - -var xhrSuccessStatus = { - - // File protocol always yields status code 0, assume 200 - 0: 200, - - // Support: IE <=9 only - // #1450: sometimes IE returns 1223 when it should be 204 - 1223: 204 - }, - xhrSupported = jQuery.ajaxSettings.xhr(); - -support.cors = !!xhrSupported && ( "withCredentials" in xhrSupported ); -support.ajax = xhrSupported = !!xhrSupported; - -jQuery.ajaxTransport( function( options ) { - var callback, errorCallback; - - // Cross domain only allowed if supported through XMLHttpRequest - if ( support.cors || xhrSupported && !options.crossDomain ) { - return { - send: function( headers, complete ) { - var i, - xhr = options.xhr(); - - xhr.open( - options.type, - options.url, - options.async, - options.username, - options.password - ); - - // Apply custom fields if provided - if ( options.xhrFields ) { - for ( i in options.xhrFields ) { - xhr[ i ] = options.xhrFields[ i ]; - } - } - - // Override mime type if needed - if ( options.mimeType && xhr.overrideMimeType ) { - xhr.overrideMimeType( options.mimeType ); - } - - // X-Requested-With header - // For cross-domain requests, seeing as conditions for a preflight are - // akin to a jigsaw puzzle, we simply never set it to be sure. - // (it can always be set on a per-request basis or even using ajaxSetup) - // For same-domain requests, won't change header if already provided. - if ( !options.crossDomain && !headers[ "X-Requested-With" ] ) { - headers[ "X-Requested-With" ] = "XMLHttpRequest"; - } - - // Set headers - for ( i in headers ) { - xhr.setRequestHeader( i, headers[ i ] ); - } - - // Callback - callback = function( type ) { - return function() { - if ( callback ) { - callback = errorCallback = xhr.onload = - xhr.onerror = xhr.onabort = xhr.ontimeout = - xhr.onreadystatechange = null; - - if ( type === "abort" ) { - xhr.abort(); - } else if ( type === "error" ) { - - // Support: IE <=9 only - // On a manual native abort, IE9 throws - // errors on any property access that is not readyState - if ( typeof xhr.status !== "number" ) { - complete( 0, "error" ); - } else { - complete( - - // File: protocol always yields status 0; see #8605, #14207 - xhr.status, - xhr.statusText - ); - } - } else { - complete( - xhrSuccessStatus[ xhr.status ] || xhr.status, - xhr.statusText, - - // Support: IE <=9 only - // IE9 has no XHR2 but throws on binary (trac-11426) - // For XHR2 non-text, let the caller handle it (gh-2498) - ( xhr.responseType || "text" ) !== "text" || - typeof xhr.responseText !== "string" ? - { binary: xhr.response } : - { text: xhr.responseText }, - xhr.getAllResponseHeaders() - ); - } - } - }; - }; - - // Listen to events - xhr.onload = callback(); - errorCallback = xhr.onerror = xhr.ontimeout = callback( "error" ); - - // Support: IE 9 only - // Use onreadystatechange to replace onabort - // to handle uncaught aborts - if ( xhr.onabort !== undefined ) { - xhr.onabort = errorCallback; - } else { - xhr.onreadystatechange = function() { - - // Check readyState before timeout as it changes - if ( xhr.readyState === 4 ) { - - // Allow onerror to be called first, - // but that will not handle a native abort - // Also, save errorCallback to a variable - // as xhr.onerror cannot be accessed - window.setTimeout( function() { - if ( callback ) { - errorCallback(); - } - } ); - } - }; - } - - // Create the abort callback - callback = callback( "abort" ); - - try { - - // Do send the request (this may raise an exception) - xhr.send( options.hasContent && options.data || null ); - } catch ( e ) { - - // #14683: Only rethrow if this hasn't been notified as an error yet - if ( callback ) { - throw e; - } - } - }, - - abort: function() { - if ( callback ) { - callback(); - } - } - }; - } -} ); - - - - -// Prevent auto-execution of scripts when no explicit dataType was provided (See gh-2432) -jQuery.ajaxPrefilter( function( s ) { - if ( s.crossDomain ) { - s.contents.script = false; - } -} ); - -// Install script dataType -jQuery.ajaxSetup( { - accepts: { - script: "text/javascript, application/javascript, " + - "application/ecmascript, application/x-ecmascript" - }, - contents: { - script: /\b(?:java|ecma)script\b/ - }, - converters: { - "text script": function( text ) { - jQuery.globalEval( text ); - return text; - } - } -} ); - -// Handle cache's special case and crossDomain -jQuery.ajaxPrefilter( "script", function( s ) { - if ( s.cache === undefined ) { - s.cache = false; - } - if ( s.crossDomain ) { - s.type = "GET"; - } -} ); - -// Bind script tag hack transport -jQuery.ajaxTransport( "script", function( s ) { - - // This transport only deals with cross domain or forced-by-attrs requests - if ( s.crossDomain || s.scriptAttrs ) { - var script, callback; - return { - send: function( _, complete ) { - script = jQuery( " - - - - - - - - - - - - - - - - - -
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    Files used in PDF extraction

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    Configuration file

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    Configuration files may define the PDF processing parameters. -By default, the pdfgetx3 program attempts to read -.pdfgetx3.cfg file from the user HOME directory, -then .pdfgetx3.cfg and pdfgetx3.cfg files -from the current working directory. -If configuration file has a different name, it needs to be specified -with the -c, --config option. -The pdfgetn3 program works in the same way, -except it checks for configuration files -~/.pdfgetn3.cfg, .pdfgetn3.cfg and pdfgetn3.cfg.

    -

    The easiest way of creating a configuration file is to generate -a template content using the --createconfig option as

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    pdfgetx3 --createconfig=test.cfg
-
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    and then change the generated test.cfg file in your favorite text -editor. The configuration file follows a simple “varname=value” syntax, -any lines starting with “#” are ignored as comments.

    -

    The configuration file has several sections marked as [SECTIONNAME]. -The [DEFAULT] section is mandatory and it contains the default -global settings. Any other sections are optional and they are applied -only when selected with the -s, --section option on the -command line. Thus

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    pdfgetx3 --config=test.cfg --section=nacl
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    -
    -

    would read the parameters from the [nacl] section after reading the -defaults. Having several sections in the configuration -file is useful when there are multiple measurements that share most of -the parameters, but differ in a few of them, for example in chemical -composition. The configuration file can then contain sections per each -sample that define only the composition, while all other parameters are -specified just once in the global DEFAULT section.

    -
    -
    -

    Input files

    -

    PDFgetX3 and PDFgetN3 accept input powder diffraction data -in the form of two-column text file, -where the first column x is either the scattering angle -2Θ in degrees, momentum transfer Q in inverse nanometers or Q -in inverse ångströms. The second column y contains the corresponding -scattered intensities normalized per unit solid angle. The actual type -of the x-values is identified by the dataformat parameter. -The input files may contain header with comments or metadata, and the -actual data are read from the first long section of numerical values.

    -

    The input files are usually passed as command-line arguments to -pdfgetx3 or pdfgetn3 programs and must be paths -accessible from the current working directory.

    -

    Input files can be also defined by setting the inputfile -value in the configuration file. The -d, --datapath -option can be then used to provide additional data directories to -search for these inputs and for the backgroundfile. -This is to support configuration files located in a different -directory than the data.

    -

    When the --find option is active, the pdfgetx3 arguments -are understood as filename patterns and the input files are found -in the current or specified directory.

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    Output files

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    PDFgetX3 and PDFgetN3 can produce up to four different output data files:

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    • .iq – I(Q), the background-corrected -intensities sampled on a regular Q-space grid in inverse ångströms,

      • -

    • .sq – S(Q), the total scattering structure function, -with intensities normalized by average scattering factors and -corrected by a polynomial fit,

      • -

    • .fq – F(Q), the reduced structure function equal to Q(S(Q) - 1),

      • -

    • .gr – G(r), the resultant PDF, where the first column is the -separation r in ångströms and the second is the function G in -Å-2.

      • -
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    You can specify what output files should be produced by setting the -outputtypes parameter in the configuration file or by -passing the -t, --outputtypes on the command line.

    -

    The header of all output files contains the parameter values that were -used in the calculation and thus it is by itself a valid configuration -file. When passed as an argument to the --config option, -the PDFgetX3 will reproduce the previous calculation.

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    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.2.1/install.html b/static_root/doc/pdfgetx/2.2.1/install.html deleted file mode 100644 index 2115f5d4..00000000 --- a/static_root/doc/pdfgetx/2.2.1/install.html +++ /dev/null @@ -1,254 +0,0 @@ - - - - - - - Installation — diffpy.pdfgetx 2.2.1 documentation - - - - - - - - - - - - - - - - - - - - - -
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    Installation

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    Software requirements

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    This software is written in Python programming language, therefore -you must have Python 3.10, 3.9, 3.8, 3.7 or 2.7 installed. In addition, -the following third-party Python libraries are also required:

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    • pip - Python package installer

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    • setuptools - tools for installing Python packages

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    • six - Python 2 and 3 compatibility library

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    • NumPy - library for scientific computing with Python

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    • matplotlib - Python plotting library

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    • IPython - enhanced interactive Python shell

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    Standard Python releases can be obtained from -https://www.python.org/downloads. -The third-party libraries can be found at the -Python Package Index -or using any Internet search engine.

    -

    Another more convenient option is to obtain one of the science-oriented -Python distributions such as -Anaconda Python, -Enthought Canopy or -PythonXY, -These distributions already include all the necessary libraries, so the -required Python software can be all installed in one step.

    -

    On Linux operating systems the third-party libraries are usually -included in a system software repository. For example on an -Ubuntu Linux computer the software dependencies can be all installed -with a single shell command

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    sudo apt-get install \
-  python3-pip python3-setuptools python3-six \
-  python3-numpy python3-matplotlib ipython3
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    This may be, of course, as well accomplished using the GUI -driven Synaptic package manager. Other Linux -distributions may use different software management tools, -but the names of the necessary packages should be very similar -to those above.

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    On Windows operating system, it may be necessary to add the -C:\Python37 directory and the scripts directory -C:\Python37\Scripts to the system PATH. Some Python -distributions already do so as a part of their installation process. The -easiest way to check is to start the Command Prompt, type -there python and see if this starts the Python interpreter.

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    Alternately, if you want to run the diffpy.pdfgetx software with a specific version of Python, -we recommend using a virtual environment, such as conda. For example, if you have Anaconda Python installed, -you can create a conda virtual environment to install the software as follow

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    conda create --name pdfgetx_env python=3.8 numpy matplotlib ipython
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    You can choose the name of the environment and python version as you desire. You can choose any of the -supported Python versions. Then, activate this environment and follow the instructions in the -next section to install the software

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    conda activate pdfgetx_env
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    Installation

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    The diffpy.pdfgetx software is distributed as a Python wheel file, -which can be obtained from the -Columbia Technology Ventures. -Once all the required software is in -place, start the command prompt on Windows or a Unix terminal on Linux -or Mac, navigate to the directory that contains the wheel file and -execute the following command:

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    pip install ./diffpy.pdfgetx-VERSION.whl
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    Here VERSION needs to be replaced to match the actual filename. It is -critical that pip installer is from a supported Python version otherwise -the program would not work. On Linux and Mac operating systems the installation may need to run with root user privileges, for example, by prepending sudo to the command line above. If root access is not available, use the pip install options --user or --prefix to install the software to a user-writable directory.

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    The package provides three programs for PDF conversion, pdfgetx3, pdfgetn3 and pdfgets3. To check if they are correctly installed run

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    pdfgetx3 --version
-pdfgetn3 --version
-pdfgets3 --version
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    This should display the software version, which should agree -with the VERSION string in the wheel package name. -The installation also includes a plotdata -command for an easy plotting of text data files. To verify -if plotdata works, run the plotdata --version command. -Finally, a comprehensive test of the installed software can -be executed using

    -
    python -m diffpy.pdfgetx.tests.run
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    Note

    -

    Older versions of diffpy.pdfgetx use Python egg format -instead of Python wheel. -To install these use the easy_install command as follows:

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    python -m easy_install ./diffpy.pdfgetx-VERSION.egg
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    IPython magic command

    -

    These instructions are intended for IPython users who would like to -integrate PDFgetX3, PDFgetN3 and PDFgetS3 into their IPython environment. If -you don’t plan to customize IPython in such way you can safely skip -this paragraph.

    -

    When pdfgetx3 or pdfgetn3 or pdfgets3 is run in interactive mode, it start -IPython interactive shell and define an extra %pdfgetx3, %pdfgetn3 and %pdfgets3 magic commands within the IPython session. The IPython -magic commands are not valid Python code, but work in a similar -fashion as standard shell commands. The %pdfgetx3, %pdfgetn3 and %pdfgets3 magics can be thus used with the same options and arguments as if run from the shell. This is useful for processing more files, while -preserving all plots or variables that were already created -in an IPython session.

    -

    The %pdfgetx3, %pdfgetn3 and %pdfgets3 magic commands can be defined -permanently so they are available in all IPython sessions. To set -this up

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    1. find the profile_default/ipython_config.py file and open it -in a text editor. If that file does not exists, -create it first by executing

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      ipython profile create
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      2. -

    2. navigate to the paragraph that contains the -c.InteractiveShellApp.extensions and add there -the following line

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      c.InteractiveShellApp.extensions = ['diffpy.pdfgetx.ipy_magics']
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      There must be no leading indent, i.e., the text must start at the -very first column.

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    Navigation

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    Interactive mode

    -

    The interactive mode is activated by using either the --i, --interact option or a non-empty ---plot option. In the interactive mode -the program starts an IPython interactive shell and pre-loads several -functions and variables related to the PDF calculation. It also defines -IPython commands %pdfgetx3 and %pdfgetn3, which can be used with -the same syntax as the pdfgetx3 and pdfgetn3 in -system shell. -The interactive session is also initialized with all functions from the -matplotlib.pyplot module for convenient plotting. -The functions and variables related to PDF processing are:

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    -pdfgetter(x=None, y=None, filename='', **kwargs)
    -

    Instance of the PDFGetter class which serves as a -low-level function that calculates the PDF. This is a callable -object, which takes as an argument a pair of input arrays for -(Q, intensity) or (2Θ, intensity) depending on -dataformat. It can be also called with a keyword -argument filename=FILE, which would read the input arrays -from the specified file. When called with no arguments, -it calculates PDF from the last input data.

    -
    -
    Parameters
    -
      -

    • x (numpy.ndarray, optional) – -The Q or 2Θ values in powder diffraction pattern.

      • -

    • y (numpy.ndarray, optional) – -The scattered intensities in powder diffraction pattern

      • -

    • filename (str, optional) – -The text data file for loading the x, y values when -they are not specified.

      • -

    • kwargs (misc, optional) – -Extra keyword arguments that are applied to -the config object, for example qmax=20.

      • -
    -
    -
    Returns
    -

    A pair of output arrays (r, G).

    -
    -
    -
    - -
    -
    -config
    -

    Instance of the PDFConfig class that stores the -parameters and input files for the program. -Use print(config) to display the current configuration values. -This is the same object as pdfgetter.config. Configuration -may be changed by setting a respective attribute of the -config object, for example:

    -
    In [1]: config.qmax = 21
-
    -
    -

    The config values may be also changed by calling the -pdfgetter() or processfiles() function with a -corresponding keyword argument, for example -processfiles(qmax=20, force="once").

    -
    - -
    -
    -iraw
    -
    -iq
    -
    -sq
    -
    -fq
    -
    -gr
    -

    These variables are assigned the input raw intensities and the -intermediate results, stored as matrix rows. The matrix rows -correspond to twotheta1, intensity1, twotheta2, intensity2, etc. -Because matrices are iterated row first, the raw intensities -from all input files can be plotted with the matplotlib plot -function as plot(*iraw).

    -

    These variables should be considered read-only and are reset -with subsequent PDF calculations.

    -
    - -
    -
    -tuneconfig(plotids=None, pdfgetter=None, axeslist=None)
    -

    Show a GUI dialog for interactive tuning of configuration variables.

    -
    -
    Parameters
    -
      -

    • plotids – The string or iterable that specify what interactive plots should be -tuned. By default the same as config.plot. It can be also an -integer index or name of a transformation in pdfgetter() or -a reference to a Transformation object.

      • -

    • pdfgetter – The optional PDFGetter object to be tuned. -This is by default the interactive pdfgetter() object.

      • -

    • axeslist – An optional list of matplotlib Axes for showing interactive plots. -When None, use subplot(N, 1, i) to create any necessary axes.

      • -
    -
    -
    -
    -

    Note

    -

    Changes from tuneconfig() apply only to the configuration -and results in memory. Use the processfiles() function -to save them to disk.

    -
    -
    -

    See also

    -

    Interactive tuning of parameters tutorial

    -
    -
    - -
    -
    -processfiles(filename=None, **kwargs)
    -

    Process all input files again with the current configuration values. -This is a higher-level function than pdfgetter(), as -it also saves output files and produces plots as specified by the -config object.

    -
    -
    Parameters
    -
      -

    • filename – One or more input files to be converted to PDFs and saved or -plotted according to the config settings. Use the -previous list of input files when not specified.

      • -

    • kwargs – An optional keyword arguments to set for the config -object, for example (force="once", qmax=18).

      • -
    -
    -
    -

    This function updates the config.inputfiles -list and the iraw, iq, -sq, fq and gr -interactive variables.

    -
    - -
    -
    -clearsession()
    -

    Clear all elements from the config.inputfiles -and also the -iraw, iq, sq, -fq and gr variables.

    -
    -
    Returns
    -

    No return value.

    -
    -
    -
    - -
    -
    -loaddata(filename, minrows=10, usecols=None, **kwargs)
    -

    Find and load data from a text file.

    -

    The data reading starts at the first matrix block of at least minrows rows -and constant number of columns. This seems to work for most of the -datafiles including those generated by PDFGetX2.

    -
    -
    Parameters
    -
      -

    • filename (str) – Name of the file to load the text data from.

      • -

    • minrows (int, optional) – Minimum number of rows in the first data block, by default 10. -All rows must have the same number of floating point values.

      • -

    • usecols (int, str, slice, iterable, optional) – Indices or names of the columns to be loaded from the data block, -the default is all columns. Data blocks that do not contain -sufficient number of columns are skipped. When usecols contain -string items, they are translated to column indices by looking -up a header line preceding the data block. String items formatted -as i:j:k are converted to slice objects. When usecols type -is string it is split to a list of names at comma and whitespace -characters.

      • -

    • unpack (bool, optional) – Return data as a sequence of columns that allows tuple unpacking -such as x, y = loaddata(FILENAME, unpack=True). Note that -transposing the loaded array as loaddata(FILENAME).T has -the same effect. The default is False.

      • -

    • kwargs (misc, optional) – Extra keyword arguments that are passed to numpy.loadtxt.

      • -
    -
    -
    Returns
    -

    data (numpy.ndarray) – The data block loaded from the text file.

    -
    -
    -
    -

    See also

    -

    numpy.loadtxt

    -
    -

    This function can be imported from the -diffpy.pdfgetx module.

    -
    - -
    -
    -plotdata(filenames, style=None, x=None, y=None, log=None, ax=None, **kwargs)
    -

    Plot one or more text data files.

    -

    The files are searched for data blocks which have enough columns -to satisfy both x and y selectors of the plotted data. This -may result in an empty plot when file has none wide-enough data -block (e.g., when y=100).

    -
    -
    Parameters
    -
      -

    • filenames (str or an iterable of string file names) – One or more text data files to be plotted.

      • -

    • style (str) – Optional style argument for the matplotlib plot() function.

      • -

    • x (int, str, or iterable, optional) – The column to be used for the x data. This can be a zero-based -index of the desired column or a column name from data header. -A special symbol “.” can be used for a sequential data index. -When not specified, use the first column.

      • -

    • y (int, str, iterable, or slice, optional) – One or more columns to be used for the y data. This can be -a single zero-based index of the desired column or an iterable -of several indices. The y value can be also a string which -is split at commas and converted to integers, column names -or slice objects, e.g. “0,sine,4:7”. The slice instances -are applied to the entire data block from each loaded file. -Use the second column when not specified.

      • -

    • log ({‘x’, ‘y’}, optional) – Set logarithmic scaling for the specified axis and linear scaling -for all others. For example, log="y" applies linear scaling -to the x-axis and logarithmic to the y-axis. Keep the current -axis scaling when not specified.

      • -

    • ax (matplotlib.axes.Axes, optional) – The axes to plot to. The plotting will be performed using the -ax.plot method. The default is pyplot.gca().

      • -

    • kwargs (misc, optional) – Keyword arguments for the matplotlib plot() function.

      • -
    -
    -
    Returns
    -

    lines (list) – The matplotlib Line2D objects added to the current axis.

    -
    -
    -
    -

    See also

    -

    diffpy.pdfgetx.loaddata

    -
    -

    This function can be imported from the -diffpy.pdfgetx.plotdata module.

    -
    - -
    -
    -findfiles(patterns=(), path='.', dotfiles=False)
    -

    Find files that match all specified patterns.

    -

    Pattern syntax:

    -
      -

    • ^start - match “start” only at the beginning of the string.

      • -

    • end$ - match “end” only at the end of string.

      • -

    • <7> - match number 7 preceded by any number of leading zeros.

      • -

    • <1-34> - match an integer range from 1 to 34 inclusive.

      • -

    • <7-> - match an integer greater or equal 7.

      • -

    • <-> - match any integer.

      • -

    • + - start a new group of patterns to match more files.

      • -

    • dir/ - set search path effective from the current pattern group.

      • -
    -

    All integer ranges <N-M> above allow one or more leading zeros. -The range syntax does not support matching of negative numbers.

    -
    -
    Parameters
    -
      -

    • patterns (iterable of strings or str, optional) – String patterns that must all match in returned filenames. -Can be also a single string with patterns separated by -whitespace characters. When empty match all files in the -current directory or in the path. A single + starts -a new pattern group for additional matches. Each pattern -group may have one entry containing /, for example, -dir/ or ./, which sets the search directory for -this and subsequent pattern groups. When pattern group -contains only the path entry it reuses file patterns from -the previous group.

      • -

    • path (str, optional) – Directory to be searched for the files. The default is “.” -to search the current directory.

      • -

    • dotfiles (bool, optional) – When True search also the hidden “.” starting files. These -files are by default ignored, but can be explicitly selected -by adding the ^. pattern.

      • -
    -
    -
    Returns
    -

    filenames (list) – The list of matching filenames. Return all files when -patterns are not specified.

    -
    -
    -

    This function can be imported from the -diffpy.pdfgetx module.

    -
    - -
    - - -
    -
    -
    -
    - -
    -
    -
    -

    Navigation

    - -
    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.2.1/intro.html b/static_root/doc/pdfgetx/2.2.1/intro.html deleted file mode 100644 index 0e57c438..00000000 --- a/static_root/doc/pdfgetx/2.2.1/intro.html +++ /dev/null @@ -1,184 +0,0 @@ - - - - - - - Introduction — diffpy.pdfgetx 2.2.1 documentation - - - - - - - - - - - - - - - - - - - - - -
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    Navigation

    - -
    - - - -
    -
    -
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    - -
    -

    Introduction

    -

    diffpy.pdfgetx is a simple yet powerful software for converting X-ray or -neutron powder diffraction data to atomic Pair Distribution Functions -(PDFs). In addition, it also allows the extraction of PDFs from small-angle -scattering (SAS) data. The software includes three command line programs -PDFgetX3, PDFgetN3 and PDFgetS3 for processing X-ray, -constant-wavelength neutron and small-angle diffraction data -respectively. PDFgetX3, PDFgetN3 and PDFgetS3 can be used in a batch -mode to convert a series of data files without user intervention. The -programs can be also run in an interactive mode that allows to control -process parameters and plot the PDFs and any intermediate results. Users -can interactively tune the PDF processing parameters, visualize their effect on the results and adjust them to their optimum values. The programs are bundled with Python library diffpy.pdfgetx for PDF processing functions, which can be used in custom Python scripts.

    -
    -

    License notice

    -

    Use of this software is subject to and permitted only under a separate, -written Use License granted by Columbia University. If you or your employer -is not a party to such an agreement, then your use of this software is -prohibited. If you don’t know whether or not your anticipated use is under -a license, you must contact Prof. Simon Billinge at sb2896@columbia.edu. -Use of this software without a license is prohibited.

    -

    Copyright 2009-2020, Trustees of Columbia University in the City of New York.

    -

    For more information please email Prof. Simon Billinge at sb2896@columbia.edu

    -
    -
    -

    Authors

    -

    This code was written by members of the Billinge Group at -Columbia University and Brookhaven National Laboratory including -Pavol Juhás, -Timur Davis, -Chia-Hao (Timothy) Liu, -Christopher Wright, -Christopher Farrow, -Connor J. Bracy, -Hung Vuong, -Songsheng Tao, -Simon Billinge.

    -
    -
    -

    References

    -

    If you use this program for a scientific research that leads -to publication, we ask that you acknowledge use of the program -by citing the following paper in your publication:

    -
    -

    P. Juhás and T. Davis, C. L. Farrow, S. J. L. Billinge -PDFgetX3: A rapid and highly automatable program for processing -powder diffraction data into total scattering pair distribution -functions, -J. Appl. Crystallogr. 46, 560-566 (2013)

    -
    -

    For research publications that use this software to process neutron -diffraction data we ask you to also cite:

    -
    -

    P. Juhás, J. N. Louwen, L. van Eijck, E. T. C. Vogt, -S. J. L. Billinge -PDFgetN3: atomic pair distribution functions from neutron -powder diffraction data using ad hoc corrections, -J. Appl. Crystallogr. 51 (2018)

    -
    -

    For research publications utilising the sasPDF utility, PDFGetS3, we ask you to acknowledge the use of the program by citing following paper in your publication:

    -
    -

    CH Liu, E. Janke, R. Li, P. Juhás, O. Gang, D. V. Talapin, S. J. L. Billinge -sasPDF: pair distribution function analysis of nanoparticle assemblies from small-angle-scattering data.

    -
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    Navigation

    - -
    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.2.1/options.html b/static_root/doc/pdfgetx/2.2.1/options.html deleted file mode 100644 index 76298190..00000000 --- a/static_root/doc/pdfgetx/2.2.1/options.html +++ /dev/null @@ -1,670 +0,0 @@ - - - - - - - Options and parameters — diffpy.pdfgetx 2.2.1 documentation - - - - - - - - - - - - - - - - - - - - - -
    -

    Navigation

    - -
    - - - -
    -
    -
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    - -
    -

    Options and parameters

    -

    PDFgetX3, PDFgetN3 and PDFgetS3 are very flexible in allowing users to customize -the actions of the program. They have a number of parameters that can -be specified either in configuration file or as command line options. -Here is a complete description of the parameters and options used by -either program.

    -
    -

    Note

    -

    The command line options start with a leading “-” and can -be only used as command line arguments when starting the -pdfgetx3 program. Within configuration file the parameter -names are plain words without any leading dashes. Finally, -parameters can be also set in the interactive mode as attributes of -the config object, but the assignments must be valid -Python statements. Here are examples of setting composition of -a processed specimen using each of these forms:

    -
      -

    1. assigned in configuration file:

      -
      ...
-composition = CaTiO3
-...
-
      -
      -
      2. -

    2. set as a command-line option when starting pdfgetx3 or -pdfgetn3:

      -
      pdfgetx3 --composition=CaTiO3
-
      -
      -
      3. -

    3. set in the IPython interactive mode:

      -
      pdfgetx3 -i
-...
-In [1]: config.composition = "CaTiO3"
-
      -
      -
      4. -
    -
    -
    -

    Program operation

    -
    -
    --h, --help
    -

    Display a brief usage information with a list of command line options -and exit.

    -
    - -
    -
    --V, --version
    -

    Display the program version and exit.

    -
    - -
    -
    ---manual
    -

    Open this manual in a Web browser and exit.

    -
    - -
    -
    --f, --find
    -
    - -
    -

    Select input files that match all patterns. The command -line arguments are by default taken as input files. However, -with the --find option they are processed as -file patterns and the matching files are then used as inputs. -The input files are by default searched in the current directory -unless there is a path entry (e.g., data/) that -selects a different search path. The search patterns are -interpreted as fixed strings, all of which must be present -in the file name. A single argument + starts -a new group of patterns to match more files that are not -covered by one set of patterns. Additional pattern -groups reuse the current search path unless they provide -their own path value. Pattern groups containing only -a path entry reuse file patterns from the last group. -When pattern groups overlap the repeated matches are ignored -to make the resulting list of files unique. Files starting -with . are ignored unless there is ^. pattern -that explicitly matches them. The search -syntax provides the following special patterns:

    - ---- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

    ^

    match at the beginning of the string, i.e., ^start -matches only filenames that start with “start”.

    $

    match at the end of string, for example, .chi$ selects -file names ending with “.chi”. A $ on its own -matches every string and can be used to select all files.

    <N>

    match number N preceded by any number of leading zeros, -e.g., <7> would match in “f7.chi”, “f007.chi”, but not -in “f77.chi”.

    <N-M>

    match an integer range from N to M inclusive. -The matched number may have one or more leading zeros.

    <7->

    match number 7 or larger.

    <-7>

    match number 7 or smaller.

    <->

    match any integer number.

    +

    start a new pattern group, for example, .chi$ + .dat$

    /

    set search path. An argument containing the / symbol -is taken as the search path, for example, data/ or -./. Each pattern group may provide its own search -path effective for that and any subsequent pattern group.

    -

    The ^$<> characters are often special to Unix or Windows -command shells, therefore they need to be enclosed in double -quotes (\”) when used on command line.

    -
    -

    See also

    -

    tutorial on matching input files

    -
    -
    -
    -
    --l, --list
    -

    List all input files and exit. This is useful with the ---find option to verify if input files -are matched as intended.

    -
    - -
    -
    -

    Configuration file options

    -
    -
    --c CONFIG, --config=CONFIG
    -

    Read custom configuration file after loading the default ones. -Do not load any configuration file when “NONE”.

    -
    - -
    -
    --s NAME, --section=NAME
    -

    Load the custom configuration file section [SectionName] after -loading the [DEFAULT] section. This is useful for creating -several configuration variants in a single configuration file.

    -
    - -
    -
    ---createconfig=FILE
    -

    Write template configuration to a new FILE and exit. Write -to the standard output when FILE is “-“.

    -
    - -

    See also the configuration file section -for further details.

    -
    -
    -

    Input and output options

    -
    -
    -inputfile
    -

    This parameter allows to specify one or more input files in the -configuration file, one file per line. The inputfile -is only used if no input files were provided on the -pdfgetx3 or pdfgetn3 command line.

    -
    - -
    -
    -dataformat
    -
    - -
    -
    ---format=FORMAT
    -

    Format of input files. Available formats are: twotheta, QA, -Qnm corresponding to a two-column text data where the first -column is either the scattering angle 2Θ in degrees, Q in -inverse ångströms or Q in inverse nanometers.

    -
    - -
    -
    -backgroundfile
    -
    - -
    -
    --b FILE, --background=FILE
    -

    Optional datafile with background intensities from an empty sample -holder. It must be in the same dataformat as other input files.

    -
    - -
    -

    Note

    -

    The following input is only used in sas mode.

    -
    -
    -
    -formfactorfile
    -
    - -
    -
    --ff FILE, --formfactorfile=FILE
    -

    Form factor intensities of the scatterers. This is required for sas mode. The form factor file is expected to be in two-column format with (Q, f2avg) data or three-column format with (Q, f2avg, favg2) data. The unit of Q is required to be A^-1.

    -
    - -
    -
    -datapath
    -
    - -
    -
    --d DATAPATH, --datapath=DATAPATH
    -

    One or more extra directories to be searched for input or -background data files. The -d option can be specified -several times to add more directories, these are prepended in front -of any default value. Within configuration file the datapath -directories have to be listed each on a separate line.

    -

    A special value “NONE” (or “none”) clears any previously defined -paths and only the further paths, if any, would be searched for -inputs.

    -
    - -
    -
    -output
    -
    - -
    -
    --o OUTPUT, --output=OUTPUT
    -

    Output file name, write to the standard output when “-“. The --t, --outputtypes option controls what results are -being saved. Normally the OUTPUT is used as a custom basename for -the output files. The OUTPUT may contain @f, @h, @r, @e, @t, @b, @o -tokens, which are expanded as follows:

    - ----- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

    token

    example

    definition

    @h

    dir1/dir2

    the input file directory or “.”

    @r

    dir1/dir2/filename

    the input path with extension removed

    @e

    dat

    the input file extension without “.”

    @t

    filename.dat

    the tail component of the input file

    @b

    filename

    the tail component with extension removed

    @o

    gr

    the output extension iq, sq, fq or gr

    -

    An empty value works the same as “@b.@o” and saves the data -in the current directory with a proper extension for the -saved results. When “@o” is not present in the OUTPUT, it is -appended as a default filename extension.

    -
    - -
    -
    -outputtypes
    -
    - -
    -
    --t TYPES, --outputtypes=TYPES
    -

    Result types to be saved, one or more comma separated values. -Supported values are “iq”, “sq”, “fq”, “gr”, corresponding to the -I(Q), S(Q), F(Q) and G(r) curves; these are also used as output -file extensions.

    -

    Result files are not written when empty, “none” or “NONE”.

    -
    - -
    -
    -force
    -
    - -
    -
    ---force=FORCE
    -

    Overwrite existing output files. By default the output -files are not written if they already exist. Possible values -in a configuration file are “true”, “yes”, “on”, “1” or -“false”, “no”, “off”, “0” or “once”. The special value “once” -permits one overwrite and then resets config.force to -False. Note that in interactive mode the values assigned -to config.force are converted to Python bool -unless equal to “once”.

    -
    - -
    -
    -

    PDF parameters

    -
    -
    -mode
    -
    - -
    -
    ---mode=STRING
    -

    The PDF conversion mode, i.e., the name of the -pdfgetter() setup. The available modes correspond -to the radiation type used in powder diffraction experiment and can -be “xray” or “neutron”.

    -
    - -
    -
    -wavelength
    -
    - -
    -
    --w FLOAT, --wavelength=FLOAT
    -

    X-ray wavelength in ångströms. This value is required -for the “twotheta” dataformat in order to convert the scattering -angles 2Θ to a momentum transfer Q. For other data formats -the wavelength is not necessary and may be left undefined.

    -
    - -
    -
    -twothetazero
    -
    - -
    -
    ---twothetazero=FLOAT
    -

    Position of the zero scattering angle in diffractometer degrees. -This parameter corrects for a constant offset in the -measured 2Θ values. When loading configuration file -it is assumed 0 unless specified otherwise. This parameter -is only effective for the “twotheta” dataformat.

    -
    - -
    -
    -composition
    -
    - -
    -
    ---composition=STRING
    -

    Chemical composition of the sample. Supported formats are -“PbTi0.5Zr0.5O3”, “Pb 1 Ti 1/2 Zr 1/2 O 3” or “CH3 (CH2)3 OH”. -Space characters are ignored, unit counts can be omitted, but it is -important to use a proper upper and lower case in atom symbols. -Elements can appear several times in the formula, e.g., “CH3 CH3”, -and the formula may contain parentheses or fractional -stoichiometries.

    -
    - -
    -
    -bgscale
    -
    - -
    -
    ---bgscale=FLOAT
    -

    Scaling of the background intensities loaded from the -backgroundfile, by default 1.

    -
    - -
    -
    -rpoly
    -
    - -
    -
    ---rpoly=FLOAT
    -

    r-limit for the maximum frequency in the F(Q) correction polynomial. -The PDF is unreliable at shorter r, however a -very small rpoly would disable polynomial correction and -give noisy PDF. -Larger values produce closer fits with a higher degree polynomial, -but when too large, they might smooth-out a useful signal in the -data. The default is 0.9.

    -
    - -
    -
    -qmaxinst
    -
    - -
    -
    ---qmaxinst
    -

    The Q cutoff for the meaningful input intensities in inverse -ångströms. Some data files may contain trailing zeros -or unreliable intensities at the upper bound of the detector range. -The qmaxinst defines a threshold for unreliable data. -The parameter is also used as an upper boundary for the polynomial -fit correction of the S(Q) data.

    -
    - -
    -
    -qmin
    -
    - -
    -
    ---qmin
    -

    The lower Q-limit for the Fourier transformation of the F(Q) curve -in inverse ångströms.

    -
    - -
    -
    -qmax
    -
    - -
    -
    ---qmax
    -

    The upper Q-limit for the Fourier transformation of the F(Q) curve -in inverse ångströms. This is essentially a limit, where sample -signal decays to the level of data noise.

    -
    - -
    -
    -rmin
    -
    - -
    -
    ---rmin=FLOAT
    -

    Lower bound of the r-grid for the calculated PDF in ångströms.

    -
    - -
    -
    -rmax
    -
    - -
    -
    ---rmax=FLOAT
    -

    Upper bound of the r-grid for the calculated PDF in ångströms.

    -
    - -
    -
    -rstep
    -
    - -
    -
    ---rstep=FLOAT
    -

    Spacing of the r-grid for the calculated PDF in ångströms.

    -
    - -
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    Other parameters

    -
    -
    -plot
    -
    - -
    -
    --p TYPES, --plot=TYPES
    -

    Plot the specified results. A comma separated list with one or -more items from “iq”, “sq”, “fq”, “gr”. No plot is produced when -empty, “none” or “NONE”. Setting this option turns on the -interactive mode.

    -
    - -
    -
    -interact
    -
    - -
    -
    --i, --interact
    -

    Start an IPython interactive session after processing all files. -Useful for tuning the configuration parameters or interactive -plotting. This is always on when plot option has been set. -See also Interactive mode for further details.

    -
    - -
    -
    -verbose
    -
    - -
    -
    ---verbose=VALUE
    -

    Level of detail for the program to report about its actions. -Possible values are “error”, “warning”, “info”, “debug”, “all” or an -integer number from 0 to 5. Messages are completely suppressed when -0, all messages are printed when verbose is 5 (“all”) or higher. -This option is useful for diagnostics of any unexpected behavior -in the program.

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    Navigation

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    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.2.1/pdfgetxn3-examples.zip b/static_root/doc/pdfgetx/2.2.1/pdfgetxn3-examples.zip deleted file mode 100644 index 50d1936c..00000000 Binary files a/static_root/doc/pdfgetx/2.2.1/pdfgetxn3-examples.zip and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.2.1/plotdata.html b/static_root/doc/pdfgetx/2.2.1/plotdata.html deleted file mode 100644 index c9bf3bb8..00000000 --- a/static_root/doc/pdfgetx/2.2.1/plotdata.html +++ /dev/null @@ -1,285 +0,0 @@ - - - - - - - The plotdata program — diffpy.pdfgetx 2.2.1 documentation - - - - - - - - - - - - - - - - - - - - - -
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    Navigation

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    The plotdata program

    -

    The PDFgetX3 software includes a simple stand-alone utility -plotdata for plotting text data files. In most cases -this program can be invoked from a command-shell as

    -
    plotdata file1.dat file2.dat
-
    -
    -

    which plots the numerical data from the text files file1.dat, -file2.dat together in a single graph. By default the first -column is used as an x variable and the second column is used for the -y values. After displaying the plot the program starts an IPython -interactive session allowing the user to modify or save plots. The -IPython session is initialized with the filenames variable -containing a list of plotted files. It also pre-loads the -plotdata() and findfiles() functions just as in PDFgetX3 -interactive session. The plotdata() -function works in a similar way as the plotdata program, -just its arguments need to be passed as Python function arguments -instead of command-line options. Thus an equivalent call of the -plotdata() function would be:

    -
    In [1]: plotdata(['file1.dat', 'file2.dat'])
-
    -
    -
    -

    Selecting files

    -

    The plotdata program includes a file searching feature -that is useful for selecting a set of files in large -directories. It is also convenient for Windows operating systems, -where the command prompt cannot do filename expansion for patterns -such as *.dat. The file search feature is controlled by the -following options:

    -
    -
    --f, --find
    -

    Use command line arguments as filename patterns and plot all matching -files. This option works in the same way as for -pdfgetx3, for full details see the -pdfgetx3 --find documentation. Note that -within command line the special patterns ^$<> need to be quoted -in double quotes (\”) so they are not processed by command shell.

    -
    - -
    -
    --l, --list
    -

    List the input files and exit. This is useful in conjunction -with the -f, --find option to check if data files -are selected as intended.

    -
    - -

    Assuming the current directory contains 20 files named -file1.dat, file2.dat, …, file20.dat, -the plotting of files 9 to 13 could be done (with a check listing) -as follows

    -
    $ plotdata -fl "<9-13>.dat"
-file9.dat
-file10.dat
-file11.dat
-file12.dat
-file13.dat
-$ plotdata -f "<9-13>.dat"
-
    -
    -

    Within an interactive IPython session the equivalent plot could be -produced by combining the plotdata() and findfiles() functions as

    -
    In [1]: plotdata(findfiles("<9-13>.dat"))
-
    -
    -
    -
    -

    Selecting x and y data

    -

    The plotdata program provides several ways of selecting -columns for x or y data and for specifying plot markers or line -formats. The columns can be specified using their integer index, -but one needs to keep in mind the index of the first column is “0” -as per Python indexing conventions. Here is a list of options -supported by the plotdata program (and function):

    -
    -
    --x X
    -

    index or name of the x-column to plot. See the -y option -for the supported syntax, but note that X may select only one -column. When set to “.” use the data-row index for x.

    -
    - -
    -
    --y Y
    -

    index or name of the y-column or columns to plot. The Y column -specification can be a comma separated list of indices, column names -or Python-like ranges, for example “1,2”, “G”, “1:4” (START:STOP, -same as “1,2,3”), “1:4:2” (START:STOP:STEP, same as “1,3”), or -“-2:” (same as “-2,-1”, i.e, the last 2 columns). Because column -indexing starts at “0” the second column must be specified as “1”.

    -

    The column names work if the data section in the file is preceded by -a headline of unique column names, for example:

    -
    x     square      cube
-1     1           1
-2     4           8
-3     9           27
-4     16          64
-
    -
    -

    For such data file the plotdata program will recognize column names -“x”, “square” and “cube” and an implicit “.” for row index.

    -
    - -
    -
    --s STYLE, --style=STYLE
    -

    optional plot format specification. See the -matplotlib.pyplot.plot() function -for a list of available formats.

    -
    - -
    -
    --L LOG, --log=LOG
    -

    axes to be plotted with logarithmic scaling, for example, “x”, “y” or -“xy”. Axes not listed in LOG will use linear scaling.

    -
    - -
    -
    --h, --help
    -

    display a brief usage info and exit.

    -
    - -
    -
    --V, --version
    -

    show program version and exit.

    -
    - -
    -
    ---manual
    -

    Open this manual page in a Web browser and exit.

    -
    - -
    -
    -

    Examples

    -

    The examples directory plotdata contains a sincos.dat -file that has 3-columns of values labeled as “x”, “sin” and “cos”. -Here are several examples of the plotdata capabilities -when used from command line - the user is encouraged to try them out:

    -
    plotdata sincos.dat
-plotdata -y 1,2 sincos.dat
-plotdata -x . -y 0:3 sincos.dat
-plotdata -y cos sincos.dat
-plotdata -x sin -y cos -sr-- sincos.dat
-
    -
    -

    An equivalent usage from a general IPython session would be:

    -
    ipython --matplotlib=auto
-In [1]: from diffpy.pdfgetx.plotdata import plotdata
-In [2]: plotdata('sincos.dat')
-In [3]: plotdata('sincos.dat', y=[1,2])
-In [4]: plotdata('sincos.dat', x='.', y=':3')
-In [5]: plotdata('sincos.dat', y='cos')
-In [6]: plotdata('sincos.dat', x='sin', y='cos', style='r--')
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    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.2.1/quick-start.html b/static_root/doc/pdfgetx/2.2.1/quick-start.html deleted file mode 100644 index a74478b3..00000000 --- a/static_root/doc/pdfgetx/2.2.1/quick-start.html +++ /dev/null @@ -1,257 +0,0 @@ - - - - - - - Quick-start guide — diffpy.pdfgetx 2.2.1 documentation - - - - - - - - - - - - - - - - - - - - - -
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    Navigation

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    Quick-start guide

    -

    This guide assumes that the software has been correctly installed and -its command line programs PDFgetX3, PDFgetN3 and PDFgetS3 can be -executed by typing pdfgetx3, pdfgetn3, or -pdfgets3 in a shell window. Please, refer to the installation section if this is not working yet.

    -
    -

    pdfgetx3 command

    -

    The pdfgetx3 program is a command-line application, therefore all -the input files and run-parameters are supplied either as command-line -arguments or through a configuration file. In general, the pdfgetx3 is -executed from a command shell as

    -
    pdfgetx3 [options] input1 input2 ... inputN
-
    -
    -

    The inputN stands for an input powder diffraction data. The -inputN file is a simple two-column text file, where the first -column corresponds to either the 2Θ diffraction angle, or a -momentum transfer, Q, in inverse nanometer or inverse ångström units. -The second column contains the corresponding X-ray intensities. The -input file may start with a header containing comments or metadata -related to the measurement. PDFgetX3 will ignore any text leading to a -long two-column section. The example input files in this manual were -created with the -FIT2D program using -its “chi” output format, thus we will also refer to them as “chi-files”. -A typical content of a “chi” file looks as folows:

    -
    Pt_bulk-00055.tif: 2-theta Scan
-2-Theta Angle (Degrees)
-
-       1465
- 2.0003892E-02  0.0000000E+00
- 6.0011677E-02  0.0000000E+00
- 1.0001946E-01  0.0000000E+00
- 1.4002724E-01  0.0000000E+00
- 1.8003502E-01  0.0000000E+00
- ...
-
    -
    -

    The command-line options are arguments that start with a dash “-” and -are used to specify run-parameters or modify the program behavior. The -options can be specified in a short form that consists of a dash and -a single character, or in a long, more descriptive format starting with -a doubled dash --. Options may require values. For short options, -the value may be joined to the option string, for example --w0.142774, while for the long options it has to be separated -with an equal sign, e.g., --wavelength=0.142774. Although -all the PDF calculation parameters can be passed as command line -options, it is often more convenient to set them in a configuration -file. When run parameter is present both in a configuration file and -as command-line option, the command-line value takes precedence. The -command-line options are all described in the Options and parameters section of -this manual. A brief summary of options can be also displayed by -executing

    -
    pdfgetx3 --help
-
    -
    -

    The best way of getting familiar with PDFgetX3 is to process -the example diffraction data described in the Tutorial. -In general, the first step is to create a commented configuration file pdfgetx3.cfg using:

    -
    pdfgetx3 --createconfig=pdfgetx3.cfg
-
    -
    -

    The configuration file can have any name, but it is preferable -to use either pdfgetx3.cfg or .pdfgetx3.cfg, -for these files are automatically loaded by PDFgetX3. All -other configuration files must be passed explicitly to the program -using the -c, --config option.

    -

    Open the pdfgetx3.cfg file in a text editor. The lines that -start with a hash mark # are comments and are not used. The lines -starting with a right brace [ denote sections in the configuration -file. The active lines are all formatted as -“NAME=VALUE”. Although PDFgetX3 has many options, in general only a few -of them are critical for the PDF calculation:

    -
      -

    • dataformat – specifies the input data format

      • -

    • wavelength – radiation wavelength in Å required for the -“twotheta” format.

      • -

    • composition – chemical composition of the sample

      • -

    • qmaxinst – upper Q boundary for a meaningful measurement -intensities.

      • -

    • qmax – Q-cutoff for the Fourier transformation that -yields the PDF.

      • -
    -

    Save the updated configuration file and run pdfgetx3 on the input data -FILENAME.chi as

    -
    pdfgetx3 --verbose=info -t gr FILENAME.chi
-
    -
    -

    Here the --verbose=info option makes pdfgetx3 -print -more information about its operation. This helps to verify -if the configuration file is indeed loaded and if the parameter -values are assigned as intended. The PDFgetX3 will not write -any output files unless told so. The -t gr option -tells the program to save the final G(r) curve as a -FILENAME.gr file in the working directory.

    -

    The saved .gr file contains a header with all the calculation -parameters and the input file name. The .gr file can be therefore -also used as a configuration file in order to redo the same -calculation

    -
    pdfgetx3 -c FILENAME.gr --plot=fq,gr
-
    -
    -

    Note this command does not include any .chi file and this will as -a result process the previously used input FILENAME.chi. -The --plot=fq,gr option tells PDFgetX3 to -display 2 plots for the reduced structure function F(Q) and the -final PDF G(r). The --plot option also implies an -interactive mode -therefore the program does not exit, but starts an -interactive IPython session. To exit the interactive mode, -type exit() and press Enter.

    -
    -
    -

    pdfgetn3 command

    -

    The pdfgetx3 and pdfgetn3 programs operate in a very similar fashion -apart from being set to assume X-ray and neutron data respectively. -The type of the scattering data can be also specified using the ---mode option. Running pdfgetn3 is nearly identical -to executing pdfgetx3 --mode=neutron. The only difference between -these commands is that pdfgetx3 checks for configuration files -pdfgetx3.cfg and .pdfgetx3.cfg, whereas -pdfgetn3 looks for pdfgetn3.cfg and .pdfgetn3.cfg.

    -
    -
    -

    pdfgets3 command

    -

    The pdfgets3 program is virtually the same as its counterparts for x-ray -(pdfgetx3) and neutron (pdfgetn3) diffraction data. The only difference -is that instead of referencing the well documented x-ray or neutron -scattering form factor data, a user-defined form factor data is used -for getting the PDF from a small-angle scattering (SAS) data. This -behavior is enabled by specifying mode = sas in the configuration -file or in the command line tool. The pdfgets3 program by default -searches for a configuration named pdfgets3.cfg and -.pdfgets3.cfg in order, when no configuration file is specified.

    -

    Please refer to the tutorial section for a step-by-step processing of the example data files and for demonstration of the capabilities in PDFgetX3, PDFgetN3 and PDFgetS3.

    -
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    Navigation

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    Release notes

    -
    -

    Version 2.2.1 - 2022-03-23

    -
    -

    Added

    -
      -

    • Added new API for accessing intermediate I(Q) plots as properties on -PDFGetter instances via properties following a naming convention of -PDFGetter.iq_<i>, where i is a zero-based index of the intermediate I(Q) -to be returned. That is, rather than a single property returning an array of -the I(Q)’s that would then be indexed, users may directly name an intermediate -I(Q) (say, the first I(Q)) via a statement such as PDFGetter.iq_0.

      • -
    -
    -
    -

    Fixed

    -
      -

    • Restored previous API behavior of PDFGetter.iq returning the I(Q) plot of -the data. Since there are now multiple I(Q) plots (one after each subsequent -background subtraction), this property now returns the final I(Q) data (i.e., -the result of applying all background subtractions).

      • -

    • Fixed formatting of authors list on PDFgetXNS3_manual.pdf cover page.

      • -
    -
    -
    -
    -

    Version 2.2.0 - 2022-02-10

    -
    -

    Added

    -
      -

    • Support for Python 3.10

      • -

    • Support for Python 3.9

      • -

    • Unittests for testing CLI functionality.

      • -

    • Tutorial example for multiple background subtractions (see -diffpy.pdfgetx/doc/examples/Multiple_Background_Subtraction).

      • -

    • New functionality for allowing multiple backgrounds to be subtracted from a -dataset accessed via using the plural name equivalent of any previously -singularly named variable (i.e., bgscale->bgscales, backgroundfile-> -backgroundfiles, etc.) in both static config files (i.e., *.cfg) and -interactive plotting sessions. Each set of parameters corresponding to a -given background subtraction can also be manipulated by a set of sliders -present in the tuneconfig window of an interactive shell session. In total, -the multiple background subtraction functionality should work identically to -the previous single background subtraction functionality except that the -multiple background files and initial scale values cannot be specified -through a pure CLI command (i.e., it must be specified either in a config file -or added/modified during an interactive plotting session).

      • -

    • Added extra test cases for testing the PDFGetter class.

      • -

    • Added extra test cases for testing the PDFConfig class.

      • -
    -
    -
    -

    Changed

    -
      -

    • Changed python versions specified in requirements.txt files to be in the -range of the respective minor version rather than fixed to the Python X.Y.0 -version

      • -

    • Python version support policy now follows NEP 29

      • -

    • Changed versions used in conda-recipe/build.sh to reflect currently -supported Python versions.

      • -

    • Changed Sphinx dependency m2r to m2r2.

      • -

    • Added Connor J. Bracy and Zach Thatcher to contributors in AUTHORS.txt

      • -

    • Added Connor J. Bracy to internal authors list and PDFgetXNS3_manual.pdf

      • -
    -
    -
    -

    Removed

    -
      -

    • Support for Python 3.5 and 3.6.

      • -
    -
    -
    -
    -

    Version 2.1.2 - 2021-12-24

    -
    -

    Fixed

    -
      -

    • Fixed the command provided to the users in the installation instructions which -incorrectly instructed them to setup a Python environment in which pdfgetx -could be installed by using the flag --python=3.8 to the correct usage of -this flag as python=3.8.

      • -
    -
    -
    -
    -

    Version 2.1.1 - 2020-09-01

    -
    -

    Added

    -
      -

    • Support for Python 3.8

      • -
    -
    -
    -
    -

    Version 2.1.0 – 2020-07-15

    -
    -

    Added

    -
      -

    • New mode sas for processing Small Angle Scattering data and -for using custom scattering factors.

      • -

    • qmax-pushes-qmin coupling of sliders in the tuneconfig tool.

      • -

    • New program pdfgets3 and IPython magic %pdfgets3.

      • -
    -
    -
    -

    Changed

    -
      -

    • Software distribution format to a universal Python wheel.

      • -

    • tuneconfig dialog to access full Q-range with all qmin, qmax, and -qmaxinst sliders. Increased range for the rpoly slider.

      • -
    -
    -
    -

    Deprecated

    -
      -

    • Software distribution in setuptools egg package.

      • -
    -
    -
    -

    Removed

    -
      -

    • Support for Python 3.4.

      • -
    -
    -
    -

    Fixed

    -
      -

    • Support backslash in the --find option path argument on Windows. -Both forward and back slashes are allowed on Windows, but other -platforms must use forward slash.

      • -

    • Recipe for platform-dependent Anaconda package.

      • -

    • Bogus test failure when installed in symlinked directory.

      • -
    -
    -
    -
    -

    Version 2.0.0 – 2018-11-02

    -
    -

    Added

    -
      -

    • New mode neutron for processing constant-wavelength -neutron scattering data.

      • -

    • Correction for an offset of diffractometer zero angle.

      • -

    • Configuration parameter twothetazero and command-line option ---twothetazero for position of the actual zero angle -in diffractometer degrees.

      • -

    • New program pdfgetn3 and IPython magic %pdfgetn3.

      • -

    • Separate configuration file pdfgetn3.cfg for the pdfgetn3 program.

      • -

    • New sub-package diffpy.pdfgetx.apps for entry points to all programs.

      • -

    • Table of electron scattering factors from E. J. Kirkland, -Advanced Computing in Electron Microscopy.

      • -

    • The + operator for additive pattern groups when matching input files -with pdfgetx3 --find.

      • -

    • An optional slash-containing entry, e.g., dir/, to set the search path -for pdfgetx3 --find. Each pattern group may have one path entry which -affects the current and subsequent pattern groups. Pattern groups that -have only the path entry reuse the previous file patterns, for example, -dir1/ .dat$ + dir2/ + dir3/.

      • -

    • The dotfiles flag argument to functs.findfiles to also find -dot-starting files without an explicit pattern.

      • -

    • Support for Python 3.7.

      • -

    • Tutorial examples for constant-wavelength neutron diffraction data.

      • -
    -
    -
    -

    Changed

    -
      -

    • Initialization arguments of PDFConfig to set initial configuration values.

      • -

    • path argument of functs.findfiles to give one search path instead -of a list of paths.

      • -

    • pdfgetx3 --find to search only the current directory and stop searching -in --datapath.

      • -

    • Improved PDF accuracy by removing repeated Q-grid interpolation.

      • -

    • Handling of dot files by pdfgetx3 --find and the functs.findfiles -function. The dotfiles are by default ignored unless explicitly selected -by a "^." pattern.

      • -

    • Return type of functs.findfiles from IPython SList to a simple list.

      • -

    • Rename camel case interactive functions to lowercase, i.e., to loaddata, -processfiles, clearsession.

      • -

    • Use config.datapath lookup in processfiles(filename).

      • -
    -
    -
    -

    Deprecated

    -
      -

    • Function cromermann.felectronatq for electron scattering -factors calculation using Mott-Bethe approximate formula.

      • -

    • IPython extension module diffpy.pdfgetx.ipy_pdfgetx3. -Use diffpy.pdfgetx.ipy_magics instead.

      • -

    • Camel case functions loadData, processFiles, clearSession.

      • -
    -
    -
    -

    Removed

    -
      -

    • Support for Python 2.6.

      • -

    • Processing of environment variable PDFGETX3PATH.

      • -

    • Support for IPython 0.x.

      • -

    • Obsolete variable __gitsha__ from the version module.

      • -

    • Processing of command line options in PDFConfig class.

      • -

    • Implicit loading of configuration files in PDFConfig instantiation.

      • -
    -
    -
    -

    Fixed

    -
      -

    • Import of all objects from matplotlib.pyplot into -an interactive session started by plotdata.

      • -

    • Inaccurate G interpolation when rstep is comparable to pi / qmax.

      • -

    • Lone anchor patterns ^, $ to match everything.

      • -
    -
    -
    -
    -

    Version 1.2 – 2018-01-12

    -
    -

    Added

    -
      -

    • Support for Python 3.4, 3.5, 3.6 in addition to Python 2.6 and 2.7.

      • -

    • Support for IPython 5.0 with preserved -compatibility with IPython 0.10 and later.

      • -

    • Support for matplotlib 2.0.

      • -

    • New option --log=LOG for the plotdata program to set logarithmic -scale for either of x or y axis. The plotdata() function learnt -a new log argument with the same purpose.

      • -

    • New argument ax for the plotdata() function that select a specific -matplotlib axis for plotting.

      • -

    • Support for Unicode filenames and values in the config -interactive variable.

      • -

    • Processing of parentheses and fractional stoichiometries in chemical -formulas as in Pb (Ti Zr)1/2 O3.

      • -

    • Explanatory error message when PDFgetX3 was installed for -unsupported Python.

      • -
    -
    -
    -

    Changed

    -
      -

    • The egg package file was enhanced to support all Python -versions. The software is now distributed in a single -egg rather than multiple eggs per each Python version.

      • -

    • PDFgetX3 option --force to take a boolean argument -(yes, no, true, etc.) or once. The configuration -parameter force can be likewise set to a bool or to -a string "once". This enables a safer one-time -overwrite of existing output files.

      • -

    • Plot labels to use a proper Unicode “Å” (Ångström) symbols. -The “Å” symbol is also used within units in output files.

      • -

    • The usecols argument of the loadData() function to also -accept scalars, open-end slice objects and string-denoted -slices such as "1:3" or "1:".

      • -

    • The plotdata program and plotdata() function to accept -open-end slices for the y-columns selection.

      • -

    • The IPython magic function %pdfgetx3 to set the _exit_code -variable as do generic shell commands run from IPython.

      • -

    • Inline documentation to use NumPy-style Napoleon format, -which is human readable and can be included in the manual.

      • -

    • Release scripts to build software package bundles and -documentation in binary-reproducible way.

      • -
    -
    -
    -

    Deprecated

    -
      -

    • Compatibility with Python 2.6.

      • -

    • Support for IPython 0.x.

      • -

    • Variable __gitsha__ in the version module which was renamed -to __git_commit__.

      • -
    -
    -
    -

    Removed

    -
      -

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deleted file mode 100644 index efb4220c..00000000 --- a/static_root/doc/pdfgetx/2.2.1/tutorial.html +++ /dev/null @@ -1,889 +0,0 @@ - - - - - - - Tutorial — diffpy.pdfgetx 2.2.1 documentation - - - - - - - - - - - - - - - - - - - - - -
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    Navigation

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    Tutorial

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    In this tutorial we will convert several X-ray powder diffraction -patterns to corresponding PDFs. Open a terminal on a Unix-based system -or a Command Prompt on Windows and navigate to the examples -folder included with the PDFgetX3 distribution. The examples -folder can be found in the parent “doc” directory relative to this -document or another option is to just search your file system for -one of the input files mentioned below. -The example files are also available at -https://www.diffpy.org/doc/pdfgetx/2.2.1/pdfgetxn3-examples.zip.

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    Nickel X-ray PDF

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    predefined configuration file

    -

    Change to the Ni directory. The file named -ni300mesh_300k_nor_1-5.chi contains powder X-ray data -measured from nickel at the Advanced Photon Source beamline -6ID-D. The file contains two columns for the 2Θ scattering -angles and X-ray intensities. The second file -kapton_bgrd_300k_nor_2-3.chi contains the background -measurement, i.e., the intensities from an empty capillary. -Finally, the pdfgetx3.cfg contains a complete configuration -parameters for converting the powder pattern to a PDF. Since all -processing parameters are already defined in the configuration file, -the first PDF calculation is very simple and involves running the -pdfgetx3 program -with the powder data file as an argument:

    -
    $ pdfgetx3 ni300mesh_300k_nor_1-5.chi
-
    -
    -

    For the first run there should be no output on the screen, -however a new file, ni300mesh_300k_nor_1-5.gr should appear -in the work directory. -We can use the plotdata program, -included with this software, to plot the output data:

    -
    $ plotdata ni300mesh_300k_nor_1-5.gr
-
    -
    -

    This will open a graph window and start an IPython interactive session. -To exit and close the figure, type exit() on the IPython prompt. -Let’s run the program again, but now with a ---verbose=info -option, to show more details about the program actions.

    -
    $ pdfgetx3 --verbose=info ni300mesh_300k_nor_1-5.chi
-
-INFO:applying pdfgetx3 defaults
-INFO:set config.mode = xray
-INFO:searching for default config file /home/user/.pdfgetx3.cfg
-INFO:searching for default config file .pdfgetx3.cfg
-INFO:searching for default config file pdfgetx3.cfg
-INFO:loaded default config file pdfgetx3.cfg
-INFO:reset config.twothetazero = 0.0
-INFO:parsing config file section [DEFAULT]
-INFO:set config.dataformat = twotheta
-INFO:set config.backgroundfile = kapton_bgrd_300k_nor_2-3.chi
-INFO:set config.outputtypes = gr
-INFO:set config.wavelength = 0.142774
-INFO:set config.composition = Ni
-INFO:set config.qmaxinst = 26.5
-INFO:set config.qmax = 26.0
-INFO:set config.rmin = 0.0
-INFO:set config.rmax = 30.0
-INFO:set config.rstep = 0.01
-INFO:finished parsing config file
-INFO:processing command line options
-INFO:set config.verbose = info
-INFO:finished with command line options
-INFO:using 1 input files from the command line.
-INFO:configuring PDFGetter mode 'xray'
-INFO:calling config_xray
-INFO:started PDF processing.
-INFO:processing 'ni300mesh_300k_nor_1-5.chi'
-INFO:resolved output file '' as 'ni300mesh_300k_nor_1-5.gr'
-WARNING:ni300mesh_300k_nor_1-5.gr already exists.
-WARNING:Use "--force=yes" or "--force=once" to overwrite.
-INFO:elapsed time: 0.095
-
    -
    -

    Here we can see what configuration files are searched, which of them -get loaded and what are the effective values of the processing -parameters. Unless the --verbose option is in effect, the -program will show only messages that have either WARNING or ERROR -importance. The warning line above indicates no output has been -written, because that file already exists. This safety check can be -overruled with the --force=yes option, upon -which pdfgetx3 would overwrite any existing files.

    -

    PDFgetX3 output files start with a header that lists all the processing -parameters and can be used as a valid configuration file with the --c option. Another option, --plot=[iq,sq,fq,gr] turns on plotting of the final PDF or of some other result. A -side effect of the --plot option is that pdfgetx3 starts in -an interactive mode, so the user can manipulate or save the plots. To -put it all together, we are now going to redo the original PDF and plot -its reduced total scattering function F(Q) and the PDF curve G(r). This -time the chi file is not necessary, because the input file is already -listed in the gr file that is now used as a custom configuration:

    -
    $ pdfgetx3 -c ni300mesh_300k_nor_1-5.gr --plot=fq,gr
-
-WARNING:ni300mesh_300k_nor_1-5.gr already exists.
-WARNING:Use "--force=yes" or "--force=once" to overwrite.
-
-Variables related to PDF processing:
-
-pdfgetter    -- PDFGetter used for calculation.
-config       -- configuration data used by PDFGetter.
-                See config.inputfiles for a list of inputs.
-iraw         -- matrix of input raw intensities with 2 rows per file.
-iq sq fq gr  -- intermediate results per each input file stored
-                as matrix rows.
-
-Functions:
-
-tuneconfig   -- dynamically tune configuration variables.
-processfiles -- process specified data files.
-clearsession -- clear all elements from the inputfiles, iraw,
-                iq, sq, fq and gr variables.
-plotdata     -- plot all or selected columns from a text data file.
-loaddata     -- load all or selected columns from a text data file.
-findfiles    -- search for files matching the specified patterns.
-
-Use "%pdfgetx3" for a fresh run without exiting IPython.
-In [1]:
-
    -
    -

    This will open a plot figure similar to

    -_images/nickelfqgr.png -

    Because of the interactive mode implied by plotting, -the program enters an IPython session. -The IPython environment is preloaded with several extra functions -and variables related to the PDF processing. For example, the -config variable stores all the configuration parameters, -and its content can be displayed with the print() -function as

    -
    In [1]: print(config)
-
-configfile = ni300mesh_300k_nor_1-5.gr
-configsection = DEFAULT
-dataformat = twotheta
-...
-qmax = 26.0
-...
-
    -
    -

    The processfiles() function allows to redo the -whole calculation and plotting process for additional input files or -for new parameter values. To plot the F(Q) and G(r) -curves calculated at Qmax = 22 Å-1, we can call -processfiles() and pass it a keyword argument for -the new qmax as follows:

    -
    In [2]: processfiles(qmax=22)
-
-# the qmax parameter was updated to a new value, thus
-In [3]: config.qmax
-Out[3]: 22
-
    -
    -

    There should be now two lines in each plot axis corresponding to -the results at Qmax equal 26 and 22 Å-1. To exit the program, -type exit().

    -
    -
    -

    processing from scratch

    -

    We have already encountered the command-line option -c -for specifying a custom configuration file. A special argument “NONE”, -will make pdfgetx3 ignore any configuration files and start up in a -default state. We can use this feature to process the nickel PDF as if -we did not have any configuration file:

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi
-
-WARNING:Nothing to do, use "-t" or "--plot" options.
-ERROR:Configuration error: wavelength not specified.
-ERROR:See "--help" for more hints.
-
    -
    -

    There is an error, for the wavelength is necessary to convert -the scattering angle 2Θ to momentum transfer Q. The -X-ray wavelength was 0.142774 Å, which can be passed with the --w, --wavelength option:

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774
-
-...
-ERROR:Configuration error: Chemical composition not known.
-ERROR:See "--help" for more hints.
-
    -
    -

    There is still an error. The PDF calculation needs an average -X-ray scattering factor of the material, which is obtained from -sample chemical composition. The composition can be specified -with the --composition option. The example -below uses a “\\” character to indicate the command continues -on the next line. Such syntax works in Unix terminals, but -on Windows the command has to be typed all on a single line:

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \
-           --composition=Ni
-
-WARNING:Nothing to do, use "-t" or "--plot" options.
-...
-
    -
    -

    There was no error message this time, but the program complains -about a lack of action. The pdfgetx3 program does not write any results -unless instructed by the -t, --outputtypes option. -The outputtypes option recognizes the following result types: -“iq”, “sq”, “fq”, “gr”. One or more of these type strings, -separated by a comma, can be included with the --t option, which will produce the corresponding -output files. An empty string, such as -t "", or -t NONE -may be used to clear any outputtypes defined in the configuration file, -and avoid the unseemly file-exists warnings.

    -

    At this point, we will not write any output files, but will use the ---plot option to display the calculated curves. The ---plot accepts the same arguments as outputtypes, so to -display the F(Q) and G(r) curves we shall run

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \
-           --composition=Ni --plot=fq,gr
-
-WARNING:qmaxinst reset to last nonzero point qmaxinst=28.0865680161
-WARNING:qmax reset to the data boundary qmaxinst=28.0865680161
-
    -
    -

    which should open the following plot window:

    -_images/nickelfqgrnoisy.png -

    The graphs look terrible. The PDF is very noisy and the F(Q) curve -shows a sudden break at about 27 Å-1. What happened? The powder -intensities are inaccurate at a very top of the detector angular range. -The interactive session is setup with -iraw, iq, sq, -fq, gr -variables for the original raw data and intermediate results. We -are going to plot the “iq” variable that has the input intensities -resampled on the Q grid. The matplotlib function -clf() clears the figure, -the iq variable is a two-row matrix with Q and I rows, and the -axis() -function lets us zoom to a given range:

    -
    In [1]: clf()
-In [2]: plot(iq[0], iq[1])
-Out[2]: [<matplotlib.lines.Line2D at 0x3e20f50>]
-In [3]: axis([20, 29, 0, 3000])
-Out[3]: [20, 29, 0, 3000]
-
    -
    -

    The graph shows a sudden drop in the raw intensities at 27 Å-1. -The qmaxinst variable defines a Q cutoff for a meaningful -instrument intensities and, to be on a safe side, we are going to set -it to 26.5 Å-1

    -
    In [4]: processfiles(qmaxinst=26.5)
-WARNING:qmax reset to the data boundary qmaxinst=26.5
-
    -
    -

    The updated curves looks reasonable without any oscillations and -breakpoints. The tuneconfig() function provides a -GUI-driven way for visualizing the processing parameters and their -effect on the results. Type tuneconfig() to execute the function, -which should open a new window with several sliders. Try to move -different sliders and see how do the F(Q) and G(r) curves change. -The rpoly parameter controls the degree of data-correction -polynomial and is an approximate low-r bound of reliable G -values. Once the parameters are tuned, they may be set to -exact values. We will also turn on the writing of the G(r) -curve and save it to an output file nicmd.gr:

    -
    In [14]: config.qmax = 26
-In [15]: config.outputtypes = 'gr'
-In [16]: config.output = 'nicmd'
-In [17]: processfiles()
-
    -
    -
    -
    -
    -

    Platinum X-ray series

    -

    PDFgetX3 has been designed to handle large series of data files. -With the fast area-detectors it is easy to measure hundreds of X-ray -patterns in a time or temperature series. Normally, these input -files need to be entered as command line arguments to the pdfgetx3 -program. This is usually no problem with Unix-like shells, which -expand filename patterns to a list of matching files. -However, such file generation is in general not available on Windows. -The input file names tend to include scan numbers which are useful -for selecting desired data, yet even with Unix shells it is -difficult to match a range of scan numbers -(z-shell being a notable exception).

    -
    -

    matching input files

    -

    The pdfgetx3 program includes a built-in function for finding -a set of input files. The command line arguments are normally taken as -input file names. However, if the -f, --find option is -present, the arguments are understood as patterns and the program looks -for files that match ALL of them. Another option --l, --list makes pdfgetx3 print out the matching files -without any other action, which can be used to verify if the patterns -match intended files.

    -

    We will try out this file search on platinum example files. Open a -terminal and navigate to the Pt directory. There should be a -series subdirectory with 6 chi files indexed from 903 to 908. -At first, let’s stay in the Pt directory and run the following -command

    -
    $ pdfgetx3 --list --find
-
-Pt_bulk-00055-pdfgetx2.gr
-Pt_bulk-00055-pdfgetx3.gr
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-pdfgetx3.cfg
-plotpdfcomparison.py
-
    -
    -

    Without any patterns the file search matches all files in the current -directory. Now let’s try to add name patterns. There are few special -patterns, for example ^ matches at the beginning of the filename, $ at the end and <N-M> matches a range of integer values from -N to M. The patterns containing ^$<> need to be quoted as -these characters have special meaning in the shell. Here are some -examples how it works.

    -

    Filenames containing “y”:

    -
    $ pdfgetx3 --list --find y
-empty_capillary-00032.chi
-plotpdfcomparison.py
-
    -
    -

    Filenames that containing both “y” and “chi”, here we use the -options --list and --find in an abbreviated -form -l and -f:

    -
    $ pdfgetx3 -lf y chi
-empty_capillary-00032.chi
-
    -
    -

    Filenames that start with “e”:

    -
    $ pdfgetx3 --list --find "^e"
-empty_capillary-00032.chi
-
    -
    -

    Filenames that contain character “2”:

    -
    $ pdfgetx3 --list --find 2
-Pt_bulk-00055-pdfgetx2.gr
-empty_capillary-00032.chi
-
    -
    -

    Filenames that contain numeric value “2”:

    -
    $ pdfgetx3 -lf "<2>"
-Pt_bulk-00055-pdfgetx2.gr
-
    -
    -

    The special argument + starts a new group of patterns to -generate extra files when they cannot be all covered by -a single set of patterns. For example, to match files that -contain contain both “bulk” and “chi” substrings and then -also those that have “empty” and “chi” in their names, use:

    -
    $ pdfgetx3 -lf bulk chi + empty chi
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-
    -
    -

    When pattern groups overlap the resulting matches are -made unique and each file is listed only once

    -
    $ pdfgetx3 -lf bulk chi + chi
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-
    -
    -
    -
    -

    data search path

    -

    Each group of PDFgetX3 patterns can have one entry containing -forward slash “/” to specify a non-current path that is searched -for input files. The path specification affects the current and -the following pattern groups unless they provide their own path. -The chi files numbered “903” to “905” and “908” from the -series subdirectory can be therefore matched using

    -
    $ pdfgetx3 -lf series/ "<903-905>" + 908
-series/Pt_bulk_ramp03-00903.chi
-series/Pt_bulk_ramp03-00904.chi
-series/Pt_bulk_ramp03-00905.chi
-series/Pt_bulk_ramp03-00908.chi
-
    -
    -

    The current directory can be selected using ./

    -
    $ pdfgetx3 -lf series/ 903 + ./ bulk chi
-series/Pt_bulk_ramp03-00903.chi
-Pt_bulk-00055.chi
-
    -
    -

    When additional pattern groups contain only the path -argument, they reuse the existing set of patterns. The -“.chi”-ending files in the current and series -directories can be thus found using

    -
    $ pdfgetx3 -lf ".chi$" + series/
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-series/Pt_bulk_ramp03-00903.chi
-series/Pt_bulk_ramp03-00904.chi
-series/Pt_bulk_ramp03-00905.chi
-series/Pt_bulk_ramp03-00906.chi
-series/Pt_bulk_ramp03-00907.chi
-series/Pt_bulk_ramp03-00908.chi
-
    -
    -
    -
    -

    output file names

    -

    By default the output files are saved in the current directory. The -output path, can be changed with the -o, --output option. -The -o recognizes several tokens that are replaced with -parts of the input file name, for example, “@b” expands to an -extension-stripped base name. In similar faction, “@o” is replaced -with the output type extension. Thus to generate PDFs for all files -in the series directory and save them in the -series-gr subfolder do

    -
    $ pdfgetx3 --find series/ "<900-910>.chi" --output=series-gr/@b.@o
-
    -
    -

    The extension “.@o” is automatic when not included anywhere in the -output file name. Thus to process the Pt series at Qmax = 18 Å-1 -while saving the results in the same folder, but with a “_qmax18” suffix -in their filenames do

    -
    $ pdfgetx3 --find series/ "<900-910>.chi" --qmax=18 -o series-gr/@b_qmax18
-
    -
    -

    For input file Pt_bulk_ramp03-00903.chi the -o option -above expands to output path series-gr/Pt_bulk_ramp03-00903_qmax18.gr. -The series-gr directory should now contain 12 “gr” files, -6 of them processed at Qmax = 27 Å-1 as given by configuration -file and 6 others processed at Qmax = 18 Å-1.

    -
    -

    See also

    -

    -o, --output for a list of output tokens

    -
    -
    -
    -
    -

    Interactive tuning of parameters

    -

    One of the most powerful features of PDFgetX3 is the ability to tune -PDF processing parameters in an interactive mode and immediately -visualize their effect on the results. To demonstrate this feature, -navigate to the Ni directory in the shell and process -the nickel PDF while plotting the F(Q) and G(r) curves. -Because of plotting the program will open an interactive IPython -session. The tuning mode can be then entered by calling the -tuneconfig() -function from the IPython environment

    -
    $ pdfgetx3 --plot=fq,gr ni300mesh_300k_nor_1-5.chi
-...
-In [1]: tuneconfig()
-
    -
    -

    The -tuneconfig() -function will by default add a second set of live lines -for the plotted curves and open a GUI dialog with sliders for the -tunable process parameters. Changing any slider would immediately -recalculate the PDF and update live lines in the plot.

    -_images/tunenickelfqgr.png -

    The constant data scale check-box rescales the result curves to a -constant maximum value. This is useful for assessing if a parameter -change produces different curve shape or if it just rescales the -results. The tunable parameters are described in the -PDF parameters section. -Only the active parameters are displayed in the tuneconfig GUI, -thus there would be no slider for the bgscale parameter -if PDF has been processed without any background data.

    -

    By default the -tuneconfig() -function displays the same curves as -specified by the --plot option, however it can be -configured to show arbitrary intermediate results or even visualize -selected steps in the PDF processing. We shall demonstrate this by -showing a live-plot of the polynomial correction together with the final -PDF. At first, we shall use the describe() method of the -pdfgetter() object to print out the chain of -transformations involved in the PDF processing and obtain a reference to -the transformation object t4 that applies the polynomial correction. -The transformation object can be then included in a list of plot -identifiers that are passed to the tuneconfig() function

    -
    $ pdfgetx3 -i ni300mesh_300k_nor_1-5.chi
-...
-Use "%pdfgetx3" for a fresh run without exiting IPython.
-
-In [1]: fig, ax = subplots(2)
-In [2]: pdfgetter.describe()
-0   TransformTwoThetaToQA
-    convert x data from twotheta to Q in 1/A
-1   TransformQGridRegular
-    Remove the data outside the (qmin, qmaxinst) range
-2   TransformBackground
-    subtract background intensity
-3   TransformXrayASFnormChris
-    scale and normalize intensities by x-ray scattering factors
-4   TransformSQnormRPoly
-    Normalize S(Q) by fitting a polynomial
-5   TransformSQToFQ
-    Convert S(Q) to F(Q).
-6   TransformFQgrid
-    Resample F(Q) to a regular grid suitable for FFT
-7   TransformFQToGr
-    Convert F(Q) to G(r).
-In [3]: t4 = pdfgetter.getTransformation(4)
-In [4]: tuneconfig([t4, 'gr'], axeslist=ax)
-In [5]: ax[0].legend(loc=2)
-
    -
    -

    The subplots() function above -is to create a new figure with 2 axes on top of each other. -Overall, the code above should display the following plot -and a GUI window:

    -_images/tunenickelt4gr.png -

    The tuning can be finished by clicking the Done button or closing the -tuneconfig GUI window. The parameter values can be thereafter adjusted -to a rounded values by setting an attribute of the config -object, for example:

    -
    In [5]: config.bgscale = 1.5
-
    -
    -

    Finally, to save the new results, we shall first confirm -outputtypes have been correctly set and then use the -processfiles() function to redo the calculations, plots and -data output for the updated configuration. Note that the -processfiles() function accepts keyword arguments for -configuration parameters. This is used at line In [8] to -turn on the force flag and is in effect a shortcut -for an extra config.force = True statement.

    -
    In [6]: config.outputtypes
-Out[6]: ['gr']
-In [7]: processfiles()
-WARNING:ni300mesh_300k_nor_1-5.gr already exists.
-WARNING:Use "--force=yes" or "--force=once" to overwrite.
-In [8]: processfiles(force=True)
-
    -
    -

    ni300mesh_300k_nor_1-5.gr was successfully saved at an -updated configuration for there were no warnings after the last call.

    -
    -
    -

    Neutron PDF

    -

    This example illustrates PDF extraction from -neutron powder data using pdfgetn3. -Navigate to the n-Sapphire directory in the shell. -The sapphire755.dat file contains powder diffraction data from -sapphire (α-Al2O3) -measured at the constant-wavelength PEARL instrument -at the Delft University of Technology. -The pdfgetn3.cfg configuration file specifies -processing parameters such as wavelength, -twothetazero, composition, and mode.

    -

    To extract the sapphire neutron PDF run

    -
    $ pdfgetn3 --verbose=info sapphire755.dat
-
-INFO:applying pdfgetn3 defaults
-INFO:set config.mode = neutron
-INFO:searching for default config file /home/user/.pdfgetn3.cfg
-INFO:searching for default config file .pdfgetn3.cfg
-INFO:searching for default config file pdfgetn3.cfg
-INFO:loaded default config file pdfgetn3.cfg
-INFO:reset config.twothetazero = 0.0
-INFO:parsing config file section [DEFAULT]
-INFO:set config.dataformat = twotheta
-INFO:set config.backgroundfile =
-INFO:set config.outputtypes = fq, gr
-INFO:set config.mode = neutron
-INFO:set config.wavelength = 1.0989
-INFO:set config.twothetazero = -0.38
-INFO:set config.composition = Al2O3
-INFO:set config.qmaxinst = 11.2
-INFO:set config.qmax = 11.2
-INFO:set config.rmin = 0.0
-INFO:set config.rmax = 20.0
-INFO:set config.rstep = 0.01
-INFO:finished parsing config file
-INFO:processing command line options
-INFO:set config.verbose = info
-INFO:finished with command line options
-INFO:using 1 input files from the command line.
-INFO:configuring PDFGetter mode 'neutron'
-INFO:calling config_neutron
-INFO:started PDF processing.
-INFO:processing 'sapphire755.dat'
-INFO:resolved output file '' as 'sapphire755.fq'
-INFO:written outpufile sapphire755.fq
-INFO:resolved output file '' as 'sapphire755.gr'
-INFO:written outpufile sapphire755.gr
-INFO:elapsed time: 0.097
-
    -
    -

    This will produce two files sapphire755.fq, sapphire755.gr -for the F(Q) and G(r) functions. -To compare them with expected results use

    -
    $ plotdata sapphire755-expected.fq sapphire755.fq
-$ plotdata sapphire755-expected.gr sapphire755.gr
-
    -
    -
    -
    -

    Fit twothetazero

    -

    For a good quality PDF it is essential to use powder patterns with -accurate values of Q. Some instruments may produce spectra with -a slightly offset scattering angle 2Θ which -causes inaccurate Q and a noticeably worse PDF. -In this example we fit a constant-wavelength neutron PDF from nickel -together with the twothetazero correction parameter for -diffractometer offset. -The procedure can be used to calibrate the zero correction from -a standard sample and then use it for subsequent PDF extractions. -The protocol can be also applied to fit zero correction in -a full-fledged PDF refinement in case -the zero offset may change for different samples.

    -

    This tutorial requires either Linux or Mac OS X platforms, -because the PDF fitting is conducted with -diffpy.cmi, -which is not yet available for Windows. -If diffpy.cmi is not yet installed, -we recommend to use Anaconda Python and set up a dedicated -Anaconda environment nbcmi for this tutorial. -This can be accomplished using the following steps:

    -
    $ conda create -n nbcmi -c diffpy python=2 diffpy.cmi
-$ conda activate nbcmi
-$ pip install path/to/diffpy.pdfgetx-VERSION.whl
-
    -
    -

    When these prerequisites are in place, -change to the n-twothetazero-fit directory -and open the self documented Jupyter notebook as follows

    -
    $ jupyter notebook fit-twothetazero.ipynb
-
    -
    -

    The notebook sets up and executes several PDF refinements and -compares the results from fits on uncorrected data and with -a fitted twothetazero. -After running all cells the notebook should produce similar graphs -as in the figure below.

    -
    -_images/twothetazerofit.svgz

    Refinement of nickel neutron PDF for (a) uncorrected data -and (b) with a refined zero correction. -The extracted PDFs are plotted as blue circles, -simulated PDFs as red lines and -the difference is plotted offset in green below.

    -
    -

    The final refined zero offset in the notebook should be approximately -0.36°. -The correction produces experimental PDF with a remarkably better fit -residual Rw which is lowered from (a) 0.18 to (b) 0.05.

    -
    -
    -

    Small-angle-scattering PDF (sasPDF)

    -

    Here we illustrate how to extract a PDF from small-angle-scattering (sas) data using pdfgets3. -To do this, navigate to the Au_DNA_NPA directory in your terminal. -In this folder, you will find Au_DNA_NPA.chi and -Au_DNA_FF.chi files which correspond to diffraction data from -DNA-capped Au nanoparticle assemblies and from a DNA-capped Au -nanoparticle colloidal solution respectively. Those two files were -measured at X21 beamline, NSLS and published in D. Nykypanchuk, M. M. -Maye, D. van der Lelie, and O. Gang, Nature 451, 549 (2008).. We thank Prof. Oleg Gang (Columbia University) for sharing this data. The pdfgets3.cfg -configuration file specifies processing parameters such as formfactorfile (required by sas mode), qmin, qmax, and mode.

    -

    To extract the PDF of DNA-capped DNA nanoparticle assemblies

    -
    $ pdfgets3 --verbose=info Au_DNA_NPA.chi
-
-INFO:applying pdfgets3 defaults
-INFO:set config.mode = sas
-INFO:searching for default config file /home/user/.pdfgets3.cfg
-INFO:searching for default config file .pdfgets3.cfg
-INFO:searching for default config file pdfgets3.cfg
-INFO:loaded default config file pdfgets3.cfg
-INFO:reset config.twothetazero = 0.0
-INFO:parsing config file section [DEFAULT]
-INFO:set config.dataformat = QA
-INFO:set config.backgroundfile =
-INFO:set config.datapath = []
-INFO:set config.formfactorfile = Au_DNA_FF.chi
-INFO:set config.output =
-INFO:set config.outputtypes = fq, gr
-INFO:set config.force = yes
-INFO:set config.mode = sas
-INFO:set config.rpoly = 240.605
-INFO:set config.qmaxinst = 0.075
-INFO:set config.qmin = 0.01
-INFO:set config.qmax = 0.072
-INFO:set config.rmin = 100.0
-INFO:set config.rmax = 5000.0
-INFO:set config.rstep = 1.0
-INFO:set config.plot = iq, fq, gr
-INFO:set config.verbose = info
-INFO:finished parsing config file
-INFO:processing command line options
-INFO:set config.verbose = info
-INFO:finished with command line options
-INFO:using 1 input files from the command line.
-INFO:configuring PDFGetter mode 'sas'
-INFO:calling config_sas
-INFO:started PDF processing.
-INFO:processing 'Au_DNA_NPA.chi'
-INFO:resolved output file '' as 'Au_DNA_NPA.fq'
-INFO:written outpufile Au_DNA_NPA.fq
-INFO:resolved output file '' as 'Au_DNA_NPA.gr'
-INFO:written outpufile Au_DNA_NPA.gr
-INFO:elapsed time: 0.947
-
    -
    -

    This will save two files Au_DNA_NPA.fq, Au_DNA_NPA.gr in the same directoy for the F(Q) and G(r) functions. This also plots F(Q) and G(r) functions in a pop-up window and the processing parameters such as rpoly or so may be tuned interactively by issuing command tuneconfig() in the IPython session as discussed above.

    -
    -
    -

    Multiple Background Subtraction

    -
    -

    Predefined configuration file

    -

    In this tutorial, we will show how to use the multiple-background subtraction -functionality by obtainining equivalent outputs from different, but equivalent, -subtractions. Change directory to the doc/examples/ -Multiple_Background_Subtraction directory. The file named -ni300mesh_300k_nor_1-5.chi contains powder X-ray data measured from -nickel at the Advanced Photon Source beamline 6ID-D. The file contains two -columns for the 2Θ scattering angles and X-ray intensities. Similarly, -kapton_bgrd_300k_nor_2-3.chi contains the background data (i.e., the -intensities from an empty kapton capillary), and a duplicate file -kapton_bgrd_300k_nor_2-3_copy.chi contains the same dataset (this -duplication of the data is necessary when using the same background multiple -times as the internal system only stores a set of unique background filenames). -The last .chi file, TEST_blank-00000.chi, simply stores a null -dataset and can be used to show the invariance of the PDF under permutation of -the order of background subtractions as well as the fact that more than just -two backgrounds can be subtracted. There are also two config files -nickel.cfg and nickel_sub_two_half_backgrounds.cfg, each of -which contain a set of complete configuration parameters for converting the Ni -powder pattern to a PDF for the case of doing so via a single background -subtraction and a multiple background subtraction, respectively. Finally, there -is a fully processed G(r) file ni300mesh_300k_nor_1-5-expected.gr which -contains the expected output of producing the PDF of the Ni sample after -subtracting the kapton background. Since all processing parameters are already -defined in these configuration files, producing the PDF using multiple -background subtractions is very simple and involves running the pdfgetx3 program and specifying the multiple background subtraction -config file and the powder data file as arguments:

    -
    $ pdfgetx3 -c nickel_sub_two_half_backgrounds.cfg ni300mesh_300k_nor_1-5.chi
-
    -
    -

    The resulting G(r) file, ni300mesh_300k_nor_1-5.gr, is the result of -producing the PDF according to:

    -
    "ni300mesh_300k_nor_1-5.chi" - 0.5*"kapton_bgrd_300k_nor_2-3.chi"
-- 0.5*"kapton_bgrd_300k_nor_2-3.chi"
-
    -
    -

    Which should be equivalent to the case where the following single background -subtraction had been performed:

    -
    "ni300mesh_300k_nor_1-5.chi" - 1.0*"kapton_bgrd_300k_nor_2-3.chi"
-
    -
    -

    The fact that both of these result in the same PDF can be verified by comparing -the produced G(r) with the expected G(r) provided in the example:

    -
    $ plotdata ni300mesh_300k_nor_1-5-expected.gr ni300mesh_300k_nor_1-5.gr
-
    -
    -
    -
    -

    Interactive Multiple Background Subtraction

    -

    The multiple background subtraction functionality can also be carried out -interactively, as per the Interactive tuning of parameters section, using the plural forms -of the relevant variables (i.e., config.bgscales, config.backgroundfiles, -etc.).

    -
    -
    -
    - - -
    -
    -
    -
    - -
    -
    -
    -

    Navigation

    - -
    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.4.0/.buildinfo b/static_root/doc/pdfgetx/2.4.0/.buildinfo deleted file mode 100644 index dcd50e2c..00000000 --- a/static_root/doc/pdfgetx/2.4.0/.buildinfo +++ /dev/null @@ -1,4 +0,0 @@ -# Sphinx build info version 1 -# This file records the configuration used when building these files. When it is not found, a full rebuild will be done. -config: b930593756d2c9edfbe41658e2b6f527 -tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/static_root/doc/pdfgetx/2.4.0/_images/nickelfqgr.png b/static_root/doc/pdfgetx/2.4.0/_images/nickelfqgr.png deleted file mode 100644 index 3fbc12de..00000000 Binary files a/static_root/doc/pdfgetx/2.4.0/_images/nickelfqgr.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.4.0/_images/nickelfqgrnoisy.png b/static_root/doc/pdfgetx/2.4.0/_images/nickelfqgrnoisy.png deleted file mode 100644 index caab8cf3..00000000 Binary files a/static_root/doc/pdfgetx/2.4.0/_images/nickelfqgrnoisy.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.4.0/_images/tunenickelfqgr.png b/static_root/doc/pdfgetx/2.4.0/_images/tunenickelfqgr.png deleted file mode 100644 index 14accde4..00000000 Binary files a/static_root/doc/pdfgetx/2.4.0/_images/tunenickelfqgr.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.4.0/_images/tunenickelt4gr.png b/static_root/doc/pdfgetx/2.4.0/_images/tunenickelt4gr.png deleted file mode 100644 index c95278cd..00000000 Binary files a/static_root/doc/pdfgetx/2.4.0/_images/tunenickelt4gr.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.4.0/_images/twothetazerofit.png b/static_root/doc/pdfgetx/2.4.0/_images/twothetazerofit.png deleted file mode 100644 index 42f3ba78..00000000 Binary files a/static_root/doc/pdfgetx/2.4.0/_images/twothetazerofit.png and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.4.0/_modules/diffpy/pdfgetx/functs.html b/static_root/doc/pdfgetx/2.4.0/_modules/diffpy/pdfgetx/functs.html deleted file mode 100644 index 3c10ea5d..00000000 --- a/static_root/doc/pdfgetx/2.4.0/_modules/diffpy/pdfgetx/functs.html +++ /dev/null @@ -1,775 +0,0 @@ - - - - - - - - diffpy.pdfgetx.functs — diffpy.pdfgetx No version found. The correct version will appear in the released version. documentation - - - - - - - - - - - - - - - - - - -
    - - -
    - -
    -
    -
    - -
    -
    -
    -
    - -

    Source code for diffpy.pdfgetx.functs

    -#!/usr/bin/env python
-##############################################################################
-#
-# diffpy.pdfgetx    by DANSE Diffraction group
-#                   Simon J. L. Billinge
-#                   (c) 2008 Trustees of the Columbia University
-#                   in the City of New York.  All rights reserved.
-#
-# File coded by:    Timur Dykhne
-#
-# See AUTHORS.rst for a list of people who contributed.
-# See LICENSENOTICE.rst for license information.
-#
-##############################################################################
-
-import os.path
-import re
-import sys
-
-
-def composition_analysis(compstring):
-    """Pulls out elements and their ratios from the config file.
-
-    compstring   -- chemical composition of the sample, e.g.,
-                    "NaCl", "H2SO4", "(LaCa)1/2 Mn O3".  Blank
-                    characters are ignored, unit counts can be omitted.
-                    It is critical to use proper upper-lower case for atom
-                    symbols as this is used to delimit them in the formula.
-
-    Returns a list of atom symbols and a corresponding list of their counts.
-    """
-    # check if parentheses are balanced
-    if compstring.count("(") != compstring.count(")"):
-        emsgbal = 'imbalanced parentheses in "%s"' % compstring
-        raise ValueError(emsgbal)
-    # make sure there is at least one uppercase character in the compstring
-    upcasechars = any(c.isupper() for c in compstring)
-    nonblank = any(not c.isspace() for c in compstring)
-    if not upcasechars and nonblank:
-        emsg = 'invalid chemical composition "%s"' % compstring
-        raise ValueError(emsg)
-    if "(" in compstring:
-        head, body, count, tail = _parse_parentheses(compstring)
-        ca_head = composition_analysis(head)
-        ca_body = composition_analysis(body)
-        ca_tail = composition_analysis(tail)
-        names = ca_head[0] + ca_body[0] + ca_tail[0]
-        fractions = ca_head[1] + [count * x for x in ca_body[1]] + ca_tail[1]
-        return names, fractions
-    # simple composition string here
-    assert ")" not in compstring
-    # split at every upper-case letter, possibly followed by a lower case
-    # one and charge specification
-    namefracs = re.split(_re_atomtype, compstring)[1:]
-    names = namefracs[0::2]
-    # use unit count when empty, convert to float otherwise
-    fractions = [_parse_fraction(w) for w in namefracs[1::2]]
-    return names, fractions
-
-
-_re_atomtype = "([A-Z][a-z]?(?:[1-8]?[+-])?)"
-
-
-def _parse_parentheses(compstring):
-    """Split fragment of chemical formula at the first pair of
-    parentheses.
-
-    compstring   -- chemical formula that contains one or more pairs
-                    of parentheses.
-
-    Return a tuple of (head, body, count, tail) where
-
-    head     -- is the input string up to the opening parenthesis
-    body     -- compstring fragment enclosed by the first parentheses.
-                It may contain more parentheses.
-    count    -- floating point ratio following the closing parenthesis.
-                Defaults to 1 when not present.
-    tail     -- trailing part of the compstring after the count.
-    """
-    psign = {"(": +1, ")": -1}
-    ptotal = 0
-    p1 = compstring.index("(")
-    for p2, c in enumerate(compstring[p1:], p1):
-        ptotal += psign.get(c, 0)
-        if ptotal == 0:
-            break
-    mx = re.search(_re_atomtype + r"|\(", compstring[p2:])
-    p3 = (mx.start() + p2) if mx else len(compstring)
-    head = compstring[:p1]
-    body = compstring[p1 + 1 : p2]
-    scnt = compstring[p2 + 1 : p3]
-    count = _parse_fraction(scnt)
-    tail = compstring[p3:]
-    rv = head, body, count, tail
-    return rv
-
-
-def _parse_fraction(s):
-    """Convert fraction strings in chemical formulas to floats.
-
-    s    -- string convertible to float or a fraction "1/3".
-
-    Return floating point value parsed from s.  Return 1.0 when
-    s is empty or of space characters only.
-    """
-    from fractions import Fraction
-
-    if "/" in s:
-        rv = float(Fraction(s))
-    elif s.strip():
-        rv = float(s)
-    else:
-        rv = 1.0
-    return rv
-
-
-
    
-[docs]
-def findfiles(patterns=(), path=".", dotfiles=False):
-    """Find files that match all specified patterns.
-
-    Pattern syntax:
-
-    * ``^start`` - match "start" only at the beginning of the string.
-    * ``end$`` - match "end" only at the end of string.
-    * ``<7>`` - match number 7 preceded by any number of leading zeros.
-    * ``<1-34>`` - match an integer range from 1 to 34 inclusive.
-    * ``<7->`` - match an integer greater or equal 7.
-    * ``<->`` - match any integer.
-    * ``+`` - start a new group of patterns to match more files.
-    * ``dir/`` - set search path effective from the current pattern group.
-
-    All integer ranges ``<N-M>`` above allow one or more leading zeros.
-    The range syntax does not support matching of negative numbers.
-
-    Parameters
-    ----------
-    patterns : iterable of strings or str, optional
-        String patterns that must all match in returned filenames.
-        Can be also a single string with patterns separated by
-        whitespace characters.  When empty match all files in the
-        current directory or in the `path`.  A single ``+`` starts
-        a new pattern group for additional matches.  Each pattern
-        group may have one entry containing ``/``, for example,
-        ``dir/`` or ``./``, which sets the search directory for
-        this and subsequent pattern groups.  When pattern group
-        contains only the path entry it reuses file patterns from
-        the previous group.
-    path : str, optional
-        Directory to be searched for the files.  The default is "."
-        to search the current directory.
-    dotfiles : bool, optional
-        When True search also the hidden "." starting files.  These
-        files are by default ignored, but can be explicitly selected
-        by adding the ``^.`` pattern.
-
-    Returns
-    -------
-    filenames : list
-        The list of matching filenames.  Return all files when
-        `patterns` are not specified.
-    """
-    import shlex
-    from itertools import groupby
-    from pathlib import PurePath
-
-    from diffpy.pdfgetx.multipattern import MultiPattern
-
-    if isinstance(patterns, str):
-        p1 = shlex.split(patterns)
-    else:
-        p1 = list(patterns)
-    dirfiles = {}
-    # split patterns into groups separated by the '+' item
-    pgroups = [list(g) for k, g in groupby(p1, key=lambda x: x != "+") if k]
-    pgroups = pgroups or [[]]
-    cpath = asunicodepath(path)
-    cpatterns = []
-    files = []
-
-    # Support backslash to identify directory entry on Windows
-    def hasslash(s):
-        return PurePath(s).name != s
-
-    for pg in pgroups:
-        gpath = tuple(p for p in pg if hasslash(p))
-        if len(gpath) > 1:
-            emsg = "Too many directories {!r}.".format(gpath)
-            raise ValueError(emsg)
-        gpatterns = [p for p in pg if p not in gpath]
-        # update current path and patterns when provided
-        if gpath:
-            (cpath,) = gpath
-        if gpatterns:
-            cpatterns = gpatterns
-        ap = os.path.abspath(cpath)
-        if ap not in dirfiles:
-            dirfiles[ap] = os.listdir(ap)
-            dirfiles[ap].sort(key=sortKeyNumericString)
-        keepdotfiles = dotfiles or any(p.startswith("^.") for p in cpatterns)
-        mp = MultiPattern(cpatterns)
-
-        def fileok(f):
-            path = PurePath(f)
-            return (not path.name.startswith(".") or keepdotfiles) and mp.match(str(path))
-
-        files += (os.path.normpath(os.path.join(cpath, f)) for f in dirfiles[ap] if fileok(f))
-    # make matching files unique and filter out any directories
-    rv = [f for f in unique_everseen(files) if os.path.isfile(f)]
-    return rv
    
-
-
-
-
    
-[docs]
-def loaddata(filename, minrows=10, usecols=None, **kwargs):
-    """Find and load data from a text file.
-
-    The data reading starts at the first matrix block of at least minrows rows
-    and constant number of columns.  This seems to work for most of the
-    datafiles including those generated by PDFGetX2.
-
-    Parameters
-    ----------
-
-    filename : str
-        Name of the file to load the text data from.
-    minrows : int, optional
-        Minimum number of rows in the first data block, by default 10.
-        All rows must have the same number of floating point values.
-    usecols : int, str, slice, iterable, optional
-        Indices or names of the columns to be loaded from the data block,
-        the default is all columns.  Data blocks that do not contain
-        sufficient number of columns are skipped.  When usecols contain
-        string items, they are translated to column indices by looking
-        up a header line preceding the data block.  String items formatted
-        as ``i:j:k`` are converted to `slice` objects.  When usecols type
-        is string it is split to a list of names at comma and whitespace
-        characters.
-    unpack : bool, optional
-        Return data as a sequence of columns that allows tuple unpacking
-        such as ``x, y = loaddata(FILENAME, unpack=True)``.  Note that
-        transposing the loaded array as ``loaddata(FILENAME).T`` has
-        the same effect.  The default is False.
-    kwargs : misc, optional
-        Extra keyword arguments that are passed to `numpy.loadtxt`.
-
-    Returns
-    -------
-    data : numpy.ndarray
-        The data block loaded from the text file.
-
-    See also
-    --------
-    numpy.loadtxt
-    """
-    from numpy import array, loadtxt
-
-    # determine the arguments
-    delimiter = kwargs.get("delimiter")
-    if delimiter is not None:
-        delimiter = delimiter.encode("utf-8")
-    # required at least one column of floating point values
-    mincv = (1, 1)
-    # but if usecols is specified, require sufficient number of columns
-    # where the used columns contain floats
-    if usecols is not None:
-        usecols = _resolveUsedColumns(usecols, filename)
-        ucx = _expandSliceItems(usecols) or [0]
-        hiidx = max(-min(ucx), max(ucx) + 1)
-        mincv = (hiidx, len(set(ucx)))
-    _ucx_cache = {}
-
-    def getucx(n):
-        return _ucx_cache.setdefault(n, _expandSliceItems(usecols, n))
-
-    # Check if a line consists of floats only and return their count
-    # Return zero if some strings cannot be converted.
-    def countcolumnsvalues(line):
-        words = line.split(delimiter)
-        # remove trailing blank columns
-        while words and not words[-1].strip():
-            words.pop(-1)
-        nc = len(words)
-        # build a list of selected words `wsel`
-        wsel = words
-        if usecols is not None:
-            try:
-                wsel = [words[i] for i in getucx(nc)]
-            except IndexError:
-                return 0, 0
-        # test if all selected words can be converted to float
-        try:
-            nv = len([float(w) for w in wsel])
-        except ValueError:
-            nc = nv = 0
-        return nc, nv
-
-    # make sure fid gets cleaned up
-    with open(filename, "rb") as fid:
-        # search for the start of datablock
-        start = ncvblock = None
-        fpos = nrows = 0
-        for line in fid:
-            fpos += len(line)
-            ncv = countcolumnsvalues(line)
-            if ncv < mincv:
-                start = None
-                continue
-            # ncv is acceptable here, require the same number of columns
-            # throughout the datablock
-            if start is None or ncv != ncvblock:
-                ncvblock = ncv
-                nrows = 0
-                start = fpos - len(line)
-            nrows += 1
-            # block was found here!
-            if nrows >= minrows:
-                break
-        # Return an empty array when no data found.
-        # loadtxt would otherwise raise an exception on loading from EOF.
-        if start is None:
-            rv = array([], dtype=float)
-        else:
-            fid.seek(start)
-            # always use usecols argument so that loadtxt does not crash
-            # in case of trailing delimiters.
-            n = ncvblock[0]
-            kwargs["usecols"] = list(range(n)) if usecols is None else getucx(n)
-            rv = loadtxt(fid, **kwargs)
-    return rv
    
-
-
-
-def findColumnNames(headlines):
-    """Obtain a list of unique column names from a list of header
-    lines."""
-    mxtwospace = re.compile(r"(?:\t|  )\s*")
-    colnames = []
-    for line in reversed(headlines):
-        words = line.split()
-        if sum(isfloat(word) for word in words) >= len(words) // 2:
-            colnames = []
-            continue
-        if line.lstrip("#").split()[:2] == ["start", "data"]:
-            continue
-        if len(words) > 1 and words[0] == "#L":
-            w1 = words[1:]
-            s1 = line.replace("#L", "", 1).strip()
-            w2 = mxtwospace.split(s1)
-            colnames = w2 if len(w2) > 1 else w1
-            break
-        if words and words[0].startswith("#"):
-            words[0] = words[0].lstrip("#").strip()
-            if not words[0]:
-                words.pop(0)
-        if words and all([w[:1].isalpha() for w in words]):
-            colnames = words
-            break
-    return colnames
-
-
-def loadColumnNames(filename):
-    """Obtain unique column names from a text file header section."""
-    with open(filename) as fp:
-        headlines = fp.readlines(32768)
-    rv = findColumnNames(headlines)
-    return rv
-
-
-def _resolveUsedColumns(usecols, filename=None):
-    """Translate any column names to corresponding integer indices.
-
-    usecols  -- an iterable of integers and/or strings.  Can be also
-                an integer or a comma or space-separated string.
-                String names are translated to integers according
-                to column names find in the filename.
-    filename -- text data file where column names are looked up.
-                Do not translate column names when not specified.
-
-    Return a new usecols list containing integers only.
-    Raise ValueError if a column name cannot be resolved.
-    """
-
-    def isstr(s):
-        return isinstance(s, str)
-
-    # (1) convert usecols to a list
-    uc1 = [usecols] if isstr(usecols) else list(usecols) if isiterable(usecols) else [usecols]
-    # (2) split string items at ","
-    uc2 = sum((c.replace(",", " ").split() if isstr(c) else [c] for c in uc1), [])
-    # (3) convert integer string items to int
-    uc3 = [int(c) if isstr(c) and isint(c) else c for c in uc2]
-    # (4) convert slice-like string items to slices
-    uc4 = []
-    for c in uc3:
-        if not isstr(c):
-            uc4.append(c)
-            continue
-        if c.count(":") == 0 or c.count(":") > 2:
-            uc4.append(c)
-            continue
-        a0 = [w.strip() for w in c.split(":")]
-        if not all(w == "" or isint(w) for w in a0):
-            uc4.append(c)
-            continue
-        # pad a0 to have 3 elements for sure
-        a0 += 3 * [""]
-        a1 = [int(w) if w else None for w in a0[:3]]
-        ss = slice(*a1)
-        uc4.append(ss)
-    # if there are no string identifiers we are done here
-    if filename is None or all(not isstr(c) for c in uc4):
-        return uc4
-    # (5) otherwise we need to translate column names to indices
-    colnames = loadColumnNames(filename)
-    colnamesnum = [(n, i) for i, n in enumerate(colnames)]
-    colnamesfixed = _fixColumnNames(colnames)
-    # use the first matching column in case of repeated names.
-    cnmtoidx = dict(reversed(colnamesnum))
-    # fixed names do not repeat so use them as they are.
-    cnmtoidx.update((n, i) for i, n in enumerate(colnamesfixed))
-    uc5 = [cnmtoidx.get(c, c) if isstr(c) else c for c in uc4]
-    # any string items left are bad names
-    badnames = [c for c in uc5 if isstr(c)]
-    if badnames:
-        emsg = "invalid column names: %s" % ", ".join(badnames)
-        raise ValueError(emsg)
-    # phew, done here.
-    return uc5
-
-
-def _fixColumnNames(names):
-    """Remove any parentheses and non-alphabetic symbols from a list of
-    names. Ensure the new list of names is still unique.
-
-    Return a new list of names.
-    """
-    rv = []
-    nameindices = {}
-    mxpar = re.compile(r"[(][^)]*[)]")
-    mxnoword = re.compile(r"\W")
-    for i, nm in enumerate(names):
-        while mxpar.search(nm):
-            nm = mxpar.sub("", nm)
-        nm = mxnoword.sub("", nm)
-        rv.append(nm)
-        nameindices.setdefault(nm, []).append(i)
-    for nm, indices in nameindices.items():
-        for i, idx in enumerate(indices[1:]):
-            rv[idx] += str(i + 1)
-    return rv
-
-
-def _expandSliceItems(lst, size=None):
-    """Replace slice items in a list with corresponding indices.
-
-    When `size` is not specified, extract available *start* and
-    *stop* values to determine the necessary length of the sliced
-    array.
-
-    Parameters
-    ----------
-    lst : list
-        The list which may contain `slice` objects.
-    size : int, optional
-        The size of the iterable to be sliced.  When specified
-        expand slice objects to corresponding indices.
-
-    Returns
-    -------
-    lst2 : list
-        The new list with slice items expanded.  All other items
-        in the input list `lst` are passed unmodified.
-    """
-    rv = []
-    indices = list(range(size)) if size is not None else []
-    for x in lst:
-        if not isinstance(x, slice):
-            rv.append(x)
-            continue
-        # x is a slice here
-        # (1) expand indices when size is specified
-        if size is not None:
-            rv += indices[x]
-            continue
-        # (2) otherwise extract known slice bounds
-        if x.start is not None:
-            rv.append(x.start)
-        # keep it simple and process only positive x.stop
-        if x.stop is not None and x.stop > 0:
-            if x.step is None or x.step > 0:
-                n = x.stop - 1
-                rv.append(n)
-    return rv
-
-
-def twoThetaToQ(twotheta, wavelength):
-    """Converts an array from having values in Two-Theta to Q in
-    angstroms.
-
-    twotheta   -- An array of two-theta values in degrees
-    wavelength -- The wavelength of the x-ray beam that was used in Angstroms.
-
-    Returns an array of Q values in 1/A units.
-    """
-    from numpy import pi, sin
-
-    Q = 4 * pi * sin(twotheta / 2.0 * pi / 180) / wavelength
-    return Q
-
-
-def pylab_draw_show():
-    """Same as calling pyplot draw and show functions."""
-    import matplotlib.pyplot as plt
-    from bg_mpl_stylesheets.styles import all_styles
-
-    plt.style.use(all_styles["bg-style"])
-    plt.rcParams["lines.linewidth"] = 1.5
-
-    plt.draw()
-    plt.show()
-    return
-
-
-def unique_everseen(iterable, key=None):
-    """Return a generator to unique ordered elements in an iterable.
-
-    iterable -- an iterable object
-    key      -- function that returns key for finding unique items.
-                Use the item value when None.
-
-    unique_everseen('AAAABBBCCDAABBB') --> A B C D
-    unique_everseen('ABBCcAD', str.lower) --> A B C D
-    """
-    seen = set()
-    for element in iterable:
-        k = element if key is None else key(element)
-        if k not in seen:
-            seen.add(k)
-            yield element
-    pass
-
-
-def isiterable(obj):
-    """Return True if object supports iteration protocol."""
-    try:
-        iter(obj)
-        rv = True
-    except TypeError:
-        rv = False
-    return rv
-
-
-def isfloat(x):
-    """Return True if string is convertible to float."""
-    try:
-        float(x)
-        rv = True
-    except ValueError:
-        rv = False
-    return rv
-
-
-def isint(x):
-    """Return True if string is convertible to int."""
-    try:
-        int(x)
-        rv = True
-    except ValueError:
-        rv = False
-    return rv
-
-
-def getbooleanorpass(value, ignore=None):
-    """Convert value to a boolean or pass it when ignored.
-
-    Parameters
-    ----------
-    value : str, number, object
-        The value to be converted to `bool` or passed unchanged.
-    ignore : container or callable, optional
-        Specify values that should be passed unchanged.  When callable
-        pass the `value` as is when `ignore(value)` is true; otherwise
-        check ``value in ignore``.
-
-    Returns
-    -------
-    result : bool or `value`
-
-    Raises
-    ------
-    ValueError
-        When `value` cannot be converted to `bool` and is not ignored.
-    """
-    # check if the value is ignored
-    if ignore is not None:
-        yesignore = ignore(value) if callable(ignore) else (value in ignore)
-        if yesignore:
-            return value
-    # here we need to convert to bool
-    if isint(value):
-        return bool(value)
-    boolean_states = {
-        "1": True,
-        "yes": True,
-        "true": True,
-        "on": True,
-        "0": False,
-        "no": False,
-        "false": False,
-        "off": False,
-    }
-    v = str(value).lower()
-    if v not in boolean_states:
-        emsg = "not a boolean: %s" % value
-        raise ValueError(emsg)
-    return boolean_states[v]
-
-
-def sortKeyNumericString(s):
-    """This function can be used as a key argument for sort to order
-    string items in numeric, rather than alphabetic order.
-
-    s    -- string entry
-
-    Return a key for comparison in sorting.  The string s is split at
-    integer segments that are then converted to integers.  Signs, decimal
-    points and exponents in s are ignored.
-    """
-    if not hasattr(sortKeyNumericString, "rxdigits"):
-        sortKeyNumericString.rxdigits = re.compile(r"(\d+)")
-    rv = sortKeyNumericString.rxdigits.split(s)
-    rv[1::2] = map(int, rv[1::2])
-    return rv
-
-
-def asunicodepath(f):
-    """Convert path to unicode if it has any non-ASCII characters.
-
-    f    -- file or directory path.  May be already unicode or a bytes
-            array.
-
-    Return f if it is already a unicode.  Otherwise decode it to unicode
-    using filesystem encoding.
-    """
-    rv = f
-    if not isinstance(f, str):
-        rv = f.decode(sys.getfilesystemencoding())
-    return rv
-
-
-def multi_delim_split(delims, string):
-    """Extend Python string splitting to splitting on multiple
-    delimiters.
-
-    delims -- an iterable of strings to be used as delimiters for splitting the
-              given string.
-    string -- the string to be split
-
-    Returns a list of strings identical to if str.split(delim) had been called
-    if specifying multiple delimiters in the arguments were supported.
-    """
-    return re.split(r"|".join(re.escape(delim) for delim in delims), string)
-
    - -
    -
    -
    - -
    - -
    -

    © Copyright 2025, The Trustees of Columbia University in the City of New York.

    -
    - - Built with Sphinx using a - theme - provided by Read the Docs. - - -
    -
    -
    -
    -
    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.4.0/_modules/diffpy/pdfgetx/plotdata.html b/static_root/doc/pdfgetx/2.4.0/_modules/diffpy/pdfgetx/plotdata.html deleted file mode 100644 index 0ed17621..00000000 --- a/static_root/doc/pdfgetx/2.4.0/_modules/diffpy/pdfgetx/plotdata.html +++ /dev/null @@ -1,443 +0,0 @@ - - - - - - - - diffpy.pdfgetx.plotdata — diffpy.pdfgetx No version found. The correct version will appear in the released version. documentation - - - - - - - - - - - - - - - - - - -
    - - -
    - -
    -
    -
    - -
    -
    -
    -
    - -

    Source code for diffpy.pdfgetx.plotdata

    -#!/usr/bin/env python
-##############################################################################
-#
-# diffpy.pdfgetx    by DANSE Diffraction group
-#                   Simon J. L. Billinge
-#                   (c) 2008 Trustees of the Columbia University
-#                   in the City of New York.  All rights reserved.
-#
-# File coded by:    Pavol Juhas
-#
-# See AUTHORS.rst for a list of people who contributed.
-# See LICENSENOTICE.rst for license information.
-#
-##############################################################################
-"""Program for quick plotting of text data files."""
-
-import os
-import sys
-
-from diffpy.pdfgetx.log import plog
-
-# Constants ------------------------------------------------------------------
-
-_PLOTDATA_BANNER = """\
-Use "plotdata" for more plots and "findfiles" to generate file names.
-See "filenames" for the current data files.
-
-"""
-
-# Functions ------------------------------------------------------------------
-
-
-
    
-[docs]
-def plotdata(filenames, style=None, x=None, y=None, log=None, ax=None, **kwargs):
-    """Plot one or more text data files.
-
-    The files are searched for data blocks which have enough columns
-    to satisfy both `x` and `y` selectors of the plotted data.  This
-    may result in an empty plot when file has none wide-enough data
-    block (e.g., when ``y=100``).
-
-    Parameters
-    ----------
-    filenames : str or an iterable of string file names
-        One or more text data files to be plotted.
-    style : str
-        Optional style argument for the matplotlib |plot| function.
-    x : int, str, or iterable, optional
-        The column to be used for the x data.  This can be a zero-based
-        index of the desired column or a column name from data header.
-        A special symbol "." can be used for a sequential data index.
-        When not specified, use the first column.
-    y : int, str, iterable, or slice, optional
-        One or more columns to be used for the y data.  This can be
-        a single zero-based index of the desired column or an iterable
-        of several indices.  The `y` value can be also a string which
-        is split at commas and converted to integers, column names
-        or slice objects, e.g. "0,sine,4:7".  The `slice` instances
-        are applied to the entire data block from each loaded file.
-        Use the second column when not specified.
-    log : {'x', 'y'}, optional
-        Set logarithmic scaling for the specified axis and linear scaling
-        for all others.  For example, ``log="y"`` applies linear scaling
-        to the x-axis and logarithmic to the y-axis.  Keep the current
-        axis scaling when not specified.
-    ax : matplotlib.axes.Axes, optional
-        The axes to plot to.  The plotting will be performed using the
-        ``ax.plot`` method.  The default is ``pyplot.gca()``.
-    kwargs : misc, optional
-        Keyword arguments for the matplotlib |plot| function.
-
-    Returns
-    -------
-    lines : list
-        The matplotlib |Line2D| objects added to the current axis.
-
-    See also
-    --------
-    diffpy.pdfgetx.loaddata
-    """
-    rv = []
-    if isinstance(filenames, str):
-        filenames = [filenames]
-    else:
-        filenames = list(filenames)
-    if log is not None and log.strip("xy"):
-        emsg = "log argument may only contain the 'x' or 'y' characters."
-        raise ValueError(emsg)
-    if not filenames:
-        return rv
-    xydatasets = [_loadplotdata(f, x, y) for f in filenames]
-    linelabels = [os.path.basename(f) for f in filenames]
-    # import pyplot which starts backend only when unavoidable
-    if ax is None:
-        import matplotlib.pyplot as plt
-        from bg_mpl_stylesheets.styles import all_styles
-
-        plt.style.use(all_styles["bg-style"])
-        plt.rcParams["lines.linewidth"] = 1.5
-
-        ax = plt.gca()
-    for pargs, plabel in zip(xydatasets, linelabels):
-        if style is not None:
-            pargs += (style,)
-        rv += ax.plot(*pargs, label=plabel, **kwargs)
-    if log is not None:
-        xscale = "log" if "x" in log else "linear"
-        yscale = "log" if "y" in log else "linear"
-        ax.set(xscale=xscale, yscale=yscale)
-    return rv
    
-
-
-
-def main(args=None):
-    """The entry point for the "plotdata" application.
-
-    Parameters
-    ----------
-    args : list of strings, optional
-        Command line arguments for the "plotdata" program.
-        When not specified, use ``sys.argv[1:]``.
-
-    Returns
-    -------
-    exitcode : int
-        The shell exit code of the "plotdata" program:
-
-        =   ============================================
-        0   successful run
-        1   data file does not exist or invalid argument
-        2   any other fatal failure
-        =   ============================================
-    """
-    from diffpy.pdfgetx.functs import asunicodepath, findfiles, pylab_draw_show
-    from diffpy.pdfgetx.interaction import create_ipython_interface, is_ipython_running, to_slist
-
-    args = sys.argv[1:] if args is None else args
-    ipyface = None
-    exitcode = 2
-    try:
-        opts, pargs = _processoptions(args)
-        if opts.openmanual:
-            from diffpy.pdfgetx.manual import openHTMLManual
-
-            openHTMLManual("plotdata.html")
-            return 0
-        filenames = [asunicodepath(f) for f in pargs]
-        if opts.find:
-            filenames = findfiles(pargs)
-        if opts.listfiles:
-            for f in filenames:
-                print(f)
-            return 0
-        if not filenames:
-            plog.warning("No input files, nothing to do.")
-            return 0
-        if not is_ipython_running():
-            ipyface = create_ipython_interface()
-        plotdata(filenames, style=opts.style, x=opts.x, y=opts.y, log=opts.log)
-        pylab_draw_show()
-        exitcode = 0
-        if ipyface:
-            # inject the pyplot functions
-            import matplotlib.pyplot as plt
-            from bg_mpl_stylesheets.styles import all_styles
-
-            plt.style.use(all_styles["bg-style"])
-            plt.rcParams["lines.linewidth"] = 1.5
-
-            plotfunctions = dict((n, getattr(plt, n)) for n in dir(plt) if not n.startswith("_"))
-            ipyface.push(plotfunctions, interactive=False)
-            # inject plotdata-related functions and variables
-            ipyface.push(dict(plotdata=plotdata), interactive=False)
-            ipyface.push(dict(findfiles=findfiles), interactive=False)
-            filenames = to_slist(filenames)
-            ipyface.push(dict(filenames=filenames), interactive=True)
-            ipyface.mainloop(banner=_PLOTDATA_BANNER)
-    except (OSError, IOError, ValueError) as e:
-        sys.stderr.write("%s\n" % e)
-        exitcode = 1
-    except SystemExit as e:
-        exitcode = e.code
-    # All done here.
-    return exitcode
-
-
-# Local Helpers --------------------------------------------------------------
-
-
-def _loadplotdata(filename, xi, yi):
-    """Load x and y arrays from filename as per the xi, yi identifiers.
-
-    Return a tuple of (xdata, ydata) that can be used with the plot
-    function.
-    """
-    import numpy
-
-    from diffpy.pdfgetx.functs import _resolveUsedColumns, loaddata
-
-    xi = _parsecolumnid(xi)
-    yi = _parsecolumnid(yi)
-    if yi is None:
-        if xi is not None:
-            emsg = "y-column must be specified for explicit x."
-            raise ValueError(emsg)
-        # xi and yi are both None here
-        d = loaddata(filename)
-        if d.ndim <= 1:
-            rv = numpy.arange(d.size, dtype=float), d
-        else:
-            rv = d[:, 0], d[:, 1]
-        return rv
-    # here yi is not None
-    if xi is None:
-        xi = [0]
-    assert isinstance(xi, list) and isinstance(yi, list)
-    ucx = _resolveUsedColumns(xi)
-    if len(ucx) > 1:
-        emsg = "x may not specify more than one column."
-        raise ValueError(emsg)
-    if any(isinstance(c, slice) for c in ucx):
-        emsg = "slice is not allowed for x identifier."
-        raise ValueError(emsg)
-    useindex = "." in ucx
-    uc = yi if useindex else xi + yi
-    d = loaddata(filename, usecols=uc)
-    if d.size == 0:
-        return d, d
-    # ensure 2-dimensional data array
-    if d.ndim == 1:
-        # determine if this is a single row or single column
-        ucr = _resolveUsedColumns(uc)
-        onerow = (len(ucr) > 1) or any(isinstance(c, slice) for c in ucr)
-        d = d.reshape((1, -1)) if onerow else d.reshape((-1, 1))
-    assert d.ndim == 2
-    nrows = d.shape[0]
-    if useindex:
-        rv = numpy.arange(nrows, dtype=float), d
-    else:
-        rv = d[:, :1], d[:, 1:]
-    return rv
-
-
-def _processoptions(args):
-    """Process the command line options and arguments.
-
-    args -- command line arguments without argzero
-
-    Return a (opts, pargs) tuple of option values and
-    the remaining positional arguments.
-    """
-    from optparse import OptionParser
-
-    from diffpy.pdfgetx import __version__
-
-    parser = OptionParser("usage: %prog [options] file1.dat file2.dat ...")
-    parser.allow_interspersed_args = True
-    parser.version = "%prog " + __version__
-    # fix help string for --help
-    oh = parser.get_option("--help")
-    oh.help = "Show this help message and exit."
-    parser.add_option("-V", "--version", action="version", help="Show program version and exit.")
-    parser.add_option(
-        "--manual", action="store_true", dest="openmanual", help=("Open manual in a web browser and exit.")
-    )
-    parser.add_option(
-        "-f",
-        "--find",
-        action="store_true",
-        help="Use arguments as file name patterns and " "plot the matching files.",
-    )
-    parser.add_option(
-        "-l",
-        "--list",
-        action="store_true",
-        dest="listfiles",
-        help=("List all input files without plotting.  " "Should be used with the --find option."),
-    )
-    parser.add_option(
-        "-x",
-        type="string",
-        help="Index or name of the x-column to plot.  " 'When "." use the data-row index as x.',
-    )
-    parser.add_option(
-        "-y",
-        type="string",
-        help="Index or name of the y-column to plot.  "
-        "May contain a comma separated list of several names or "
-        'indices or Python-like ranges, like "1,2", "G", "0:6:2".  '
-        "Column indices are zero based therefore the second column "
-        'is specified as "1".',
-    )
-    parser.add_option(
-        "-s",
-        "--style",
-        type="string",
-        help="Optional plot style string.  See matplotlib "
-        "documentation for the plot function for a list of "
-        "available styles.",
-    )
-    parser.add_option(
-        "-L",
-        "--log",
-        type="string",
-        help="Set logarithmic scaling for the specified x or y axis "
-        'and linear for all others, for example, "xy", "y" or "".',
-    )
-    opts, pargs = parser.parse_args(args)
-    return opts, pargs
-
-
-def _parsecolumnid(sx):
-    """Helper function that converts a string column identifier to
-    either None or a list of integer indices, slice objects and string
-    column names, aka something that is digestable as the loaddata
-    usecols argument."""
-    from diffpy.pdfgetx.functs import isiterable
-
-    if isinstance(sx, str):
-        rv = sx.replace(",", " ").split()
-    elif sx is None or sx == "":
-        rv = None
-    else:
-        rv = list(sx) if isiterable(sx) else [sx]
-    return rv
-
-
-# Kick starter ---------------------------------------------------------------
-
-if __name__ == "__main__":
-    sys.exit(main())
-
    - -
    -
    -
    - -
    - -
    -

    © Copyright 2025, The Trustees of Columbia University in the City of New York.

    -
    - - Built with Sphinx using a - theme - provided by Read the Docs. - - -
    -
    -
    -
    -
    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.4.0/_modules/index.html b/static_root/doc/pdfgetx/2.4.0/_modules/index.html deleted file mode 100644 index 352c7e25..00000000 --- a/static_root/doc/pdfgetx/2.4.0/_modules/index.html +++ /dev/null @@ -1,112 +0,0 @@ - - - - - - - - Overview: module code — diffpy.pdfgetx No version found. The correct version will appear in the released version. documentation - - - - - - - - - - - - - - - - - - -
    - - -
    - -
    -
    -
    -
      -
      • -
    • Overview: module code
      • -
    • -
      • -
    -
    -
    -
    -
    - -

    All modules for which code is available

    - - -
    -
    -
    - -
    - -
    -

    © Copyright 2025, The Trustees of Columbia University in the City of New York.

    -
    - - Built with Sphinx using a - theme - provided by Read the Docs. - - -
    -
    -
    -
    -
    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.4.0/_sources/files.rst.txt b/static_root/doc/pdfgetx/2.4.0/_sources/files.rst.txt deleted file mode 100644 index edc63d96..00000000 --- a/static_root/doc/pdfgetx/2.4.0/_sources/files.rst.txt +++ /dev/null @@ -1,102 +0,0 @@ -Files used in PDF extraction -======================================================================== - -.. include:: abbreviations.txt -.. _my-configfile: -.. program:: pdfgetx3 - -Configuration file ------------------------------------------------------------------------- - -Configuration files may define the PDF processing parameters. -By default, the :program:`pdfgetx3` program attempts to read -:file:`.pdfgetx3.cfg` file from the user HOME directory, -then :file:`.pdfgetx3.cfg` and :file:`pdfgetx3.cfg` files -from the current working directory. -If configuration file has a different name, it needs to be specified -with the :option:`-c, --config <-c>` option. -The :program:`pdfgetn3` program works in the same way, -except it checks for configuration files -:file:`~/.pdfgetn3.cfg`, :file:`.pdfgetn3.cfg` and :file:`pdfgetn3.cfg`. - -The easiest way of creating a configuration file is to generate -a template content using the :option:`--createconfig` option as :: - - pdfgetx3 --createconfig=test.cfg - -and then change the generated test.cfg file in your favorite text -editor. The configuration file follows a simple "varname=value" syntax, -any lines starting with "#" are ignored as comments. - -The configuration file has several sections marked as ``[SECTIONNAME]``. -The ``[DEFAULT]`` section is mandatory and it contains the default -global settings. Any other sections are optional and they are applied -only when selected with the :option:`-s, --section <-s>` option on the -command line. Thus :: - - pdfgetx3 --config=test.cfg --section=nacl - -would read the parameters from the ``[nacl]`` section after reading the -defaults. Having several sections in the configuration -file is useful when there are multiple measurements that share most of -the parameters, but differ in a few of them, for example in chemical -composition. The configuration file can then contain sections per each -sample that define only the composition, while all other parameters are -specified just once in the global DEFAULT section. - - -Input files ------------------------------------------------------------------------- - -PDFgetX3 and PDFgetN3 accept input powder diffraction data -in the form of two-column text file, -where the first column x is either the scattering angle -|twotheta| in degrees, momentum transfer *Q* in inverse nanometers or *Q* -in inverse ångströms. The second column y contains the corresponding -scattered intensities normalized per unit solid angle. The actual type -of the x-values is identified by the :confval:`dataformat` parameter. -The input files may contain header with comments or metadata, and the -actual data are read from the first long section of numerical values. - -The input files are usually passed as command-line arguments to -:program:`pdfgetx3` or :program:`pdfgetn3` programs and must be paths -accessible from the current working directory. - -Input files can be also defined by setting the :confval:`inputfile` -value in the configuration file. The :option:`-d, --datapath <-d>` -option can be then used to provide additional data directories to -search for these inputs and for the :confval:`backgroundfile`. -This is to support configuration files located in a different -directory than the data. - -When the :option:`--find <-f>` option is active, the pdfgetx3 arguments -are understood as filename patterns and the input files are found -in the current or specified directory. - - -Output files ------------------------------------------------------------------------- - -PDFgetX3 and PDFgetN3 can produce up to four different output data files: - -* .iq -- |IQ|, the background-corrected - intensities sampled on a regular *Q*-space grid in inverse ångströms, - -* .sq -- |SQ|, the total scattering structure function, - with intensities normalized by average scattering factors and - corrected by a polynomial fit, - -* .fq -- |FQ|, the reduced structure function equal to *Q*\ (|SQ| - 1), - -* .gr -- |Gr|, the resultant PDF, where the first column is the - separation *r* in ångströms and the second is the function *G* in - Å\ :sup:`-2`. - -You can specify what output files should be produced by setting the -:confval:`outputtypes` parameter in the configuration file or by -passing the :option:`-t, --outputtypes <-t>` on the command line. - -The header of all output files contains the parameter values that were -used in the calculation and thus it is by itself a valid configuration -file. When passed as an argument to the :option:`--config <-c>` option, -the PDFgetX3 will reproduce the previous calculation. diff --git a/static_root/doc/pdfgetx/2.4.0/_sources/index.rst.txt b/static_root/doc/pdfgetx/2.4.0/_sources/index.rst.txt deleted file mode 100644 index c7bf373e..00000000 --- a/static_root/doc/pdfgetx/2.4.0/_sources/index.rst.txt +++ /dev/null @@ -1,38 +0,0 @@ -.. PDFgetX3 documentation master file, created by - sphinx-quickstart on Tue Sep 21 18:35:11 2010. - You can adapt this file completely to your liking, - but it should at least contain the root `toctree` directive. - -######################################################################## -diffpy.pdfgetx -######################################################################## - -User manual for PDFgetX3, PDFgetN3, PDFgetS3 and Python package diffpy.pdfgetx. - -| Release |release| -| |today| - -======================================================================== -Table of contents -======================================================================== - - -.. toctree:: - :maxdepth: 2 - - intro - install - quick-start - tutorial - files - interact - options - plotdata - release - -======================================================================== -Indices -======================================================================== - -* :ref:`genindex` -* :ref:`search` diff --git a/static_root/doc/pdfgetx/2.4.0/_sources/install.rst.txt b/static_root/doc/pdfgetx/2.4.0/_sources/install.rst.txt deleted file mode 100644 index 8cda3ccc..00000000 --- a/static_root/doc/pdfgetx/2.4.0/_sources/install.rst.txt +++ /dev/null @@ -1,145 +0,0 @@ -Installation -======================================================================== - -.. include:: abbreviations.txt - -Software requirements ------------------------------------------------------------------------- - -This software is written in Python programming language, therefore -you must have Python 3.13, 3.12, or 3.11 installed. In addition, -the following third-party Python libraries are also required: - -* pip - Python package installer -* setuptools - tools for installing Python packages -* NumPy - library for scientific computing with Python -* matplotlib - Python plotting library -* IPython - enhanced interactive Python shell - -Standard Python releases can be obtained from -https://www.python.org/downloads. -The third-party libraries can be found at the -`Python Package Index `__ -or using any Internet search engine. - -Another more convenient option is to obtain one of the science-oriented -Python distributions such as -`Anaconda Python`_, -`Enthought Canopy `_ or -`PythonXY `_, -These distributions already include all the necessary libraries, so the -required Python software can be all installed in one step. - -On Linux operating systems the third-party libraries are usually -included in a system software repository. For example on an -Ubuntu Linux computer the software dependencies can be all installed -with a single shell command :: - - sudo apt-get install \ - python3-pip python3-setuptools \ - python3-numpy python3-matplotlib ipython3 - -This may be, of course, as well accomplished using the GUI -driven Synaptic package manager. Other Linux -distributions may use different software management tools, -but the names of the necessary packages should be very similar -to those above. - -On Windows operating system, it may be necessary to add the -``C:\Python37`` directory and the scripts directory -``C:\Python37\Scripts`` to the system :envvar:`!PATH`. Some Python -distributions already do so as a part of their installation process. The -easiest way to check is to start the :program:`Command Prompt`, type -there ``python`` and see if this starts the Python interpreter. - -Alternately, if you want to run the diffpy.pdfgetx software with a specific version of Python, -we recommend using a virtual environment, such as ``conda``. For example, if you have Anaconda Python installed, -you can create a conda virtual environment to install the software as follow :: - - conda create --name pdfgetx_env python=3.13 numpy matplotlib ipython - -You can choose the name of the environment and python version as you desire. You can choose any of the -supported Python versions. Then, activate this environment and follow the instructions in the -next section to install the software :: - - conda activate pdfgetx_env - -Installation ------------------------------------------------------------------------- - -The diffpy.pdfgetx software is distributed as a Python wheel file, -which can be obtained from the -`Columbia Technology Ventures -`__. -Once all the required software is in -place, start the command prompt on Windows or a Unix terminal on Linux -or Mac, navigate to the directory that contains the wheel file and -execute the following command:: - - pip install ./diffpy.pdfgetx-VERSION.whl - -Here VERSION needs to be replaced to match the actual filename. It is -critical that pip installer is from a supported Python version otherwise -the program would not work. On Linux and Mac operating systems the installation may need to run with root user privileges, for example, by prepending ``sudo`` to the command line above. If root access is not available, use the ``pip install`` options :option:`!--user` or :option:`!--prefix` to install the software to a user-writable directory. - -The package provides three programs for PDF conversion, :program:`pdfgetx3`, :program:`pdfgetn3` and :program:`pdfgets3`. To check if they are correctly installed run :: - - pdfgetx3 --version - pdfgetn3 --version - pdfgets3 --version - -This should display the software version, which should agree -with the VERSION string in the wheel package name. -The installation also includes a :program:`plotdata` -command for an easy plotting of text data files. To verify -if plotdata works, run the ``plotdata --version`` command. -Finally, a comprehensive test of the installed software can -be executed using :: - - python -m diffpy.pdfgetx.tests.run - -.. note:: - - Older versions of diffpy.pdfgetx use Python egg format - instead of Python wheel. - To install these use the easy_install command as follows:: - - python -m easy_install ./diffpy.pdfgetx-VERSION.egg - -.. index:: %pdfgetx3 IPython magic -.. index:: %pdfgetn3 IPython magic -.. index:: %pdfgets3 IPython magic - -IPython magic command ------------------------------------------------------------------------- - -These instructions are intended for `IPython`_ users who would like to -integrate PDFgetX3, PDFgetN3 and PDFgetS3 into their IPython environment. If -you don't plan to customize IPython in such way you can safely skip -this paragraph. - -When pdfgetx3 or pdfgetn3 or pdfgets3 is run in interactive mode, it start -IPython interactive shell and define an extra ``%pdfgetx3``, ``%pdfgetn3`` and ``%pdfgets3`` magic commands within the IPython session. The IPython -magic commands are not valid Python code, but work in a similar -fashion as standard shell commands. The ``%pdfgetx3``, ``%pdfgetn3`` and ``%pdfgets3`` magics can be thus used with the same options and arguments as if run from the shell. This is useful for processing more files, while -preserving all plots or variables that were already created -in an IPython session. - -The ``%pdfgetx3``, ``%pdfgetn3`` and ``%pdfgets3`` magic commands can be defined -permanently so they are available in all IPython sessions. To set -this up - -#. find the ``profile_default/ipython_config.py`` file and open it - in a text editor. If that file does not exists, - create it first by executing :: - - ipython profile create - -#. navigate to the paragraph that contains the - :py:data:`!c.InteractiveShellApp.extensions` and add there - the following line :: - - c.InteractiveShellApp.extensions = ['diffpy.pdfgetx.ipy_magics'] - - There must be no leading indent, i.e., the text must start at the - very first column. diff --git a/static_root/doc/pdfgetx/2.4.0/_sources/interact.rst.txt b/static_root/doc/pdfgetx/2.4.0/_sources/interact.rst.txt deleted file mode 100644 index 0d4fb746..00000000 --- a/static_root/doc/pdfgetx/2.4.0/_sources/interact.rst.txt +++ /dev/null @@ -1,154 +0,0 @@ -Interactive mode -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 -.. py:currentmodule:: _interactive_ - -The interactive mode is activated by using either the -:option:`-i, --interact <-i>` option or a non-empty -:option:`--plot <-p>` option. In the interactive mode -the program starts an `IPython`_ interactive shell and pre-loads several -functions and variables related to the PDF calculation. It also defines -IPython commands ``%pdfgetx3`` and ``%pdfgetn3``, which can be used with -the same syntax as the :program:`pdfgetx3` and :program:`pdfgetn3` in -system shell. -The interactive session is also initialized with all functions from the -:py:mod:`matplotlib.pyplot` module for convenient plotting. -The functions and variables related to PDF processing are: - -.. py:function:: pdfgetter(x=None, y=None, filename='', **kwargs) - - Instance of the :py:class:`!PDFGetter` class which serves as a - low-level function that calculates the PDF. This is a callable - object, which takes as an argument a pair of input arrays for - (*Q*, intensity) or (|twotheta|, intensity) depending on - :confval:`dataformat`. It can be also called with a keyword - argument ``filename=FILE``, which would read the input arrays - from the specified file. When called with no arguments, - it calculates PDF from the last input data. - - :parameters: - * **x** (*numpy.ndarray, optional*) -- - The *Q* or |twotheta| values in powder diffraction pattern. - - * **y** (*numpy.ndarray, optional*) -- - The scattered intensities in powder diffraction pattern - - * **filename** (*str, optional*) -- - The text data file for loading the `x`, `y` values when - they are not specified. - - * **kwargs** (*misc, optional*) -- - Extra keyword arguments that are applied to - the :data:`!config` object, for example ``qmax=20``. - - :return: - A pair of output arrays *(r, G)*. - -.. interactvar:: config - - Instance of the :py:class:`!PDFConfig` class that stores the - :ref:`parameters and input files ` for the program. - Use ``print(config)`` to display the current configuration values. - This is the same object as :data:`!pdfgetter.config`. Configuration - may be changed by setting a respective attribute of the - :interactvar:`!config` object, for example:: - - In [1]: config.qmax = 21 - - The :py:data:`!config` values may be also changed by calling the - :py:func:`pdfgetter` or :py:func:`processfiles` function with a - corresponding keyword argument, for example - ``processfiles(qmax=20, force="once")``. - -.. interactvar:: iraw - iq - sq - fq - gr - - These variables are assigned the input raw intensities and the - intermediate results, stored as matrix rows. The matrix rows - correspond to twotheta1, intensity1, twotheta2, intensity2, etc. - Because matrices are iterated row first, the raw intensities - from all input files can be plotted with the matplotlib plot - function as ``plot(*iraw)``. - - These variables should be considered read-only and are reset - with subsequent PDF calculations. - -.. py:function:: tuneconfig(plotids=None, pdfgetter=None, axeslist=None) - - Show a GUI dialog for interactive tuning of configuration variables. - - :arg plotids: - The string or iterable that specify what interactive plots should be - tuned. By default the same as ``config.plot``. It can be also an - integer index or name of a transformation in :py:func:`pdfgetter` or - a reference to a :py:class:`!Transformation` object. - - :arg pdfgetter: - The optional :py:class:`!PDFGetter` object to be tuned. - This is by default the interactive :py:func:`!pdfgetter` object. - - :arg axeslist: - An optional list of matplotlib Axes for showing interactive plots. - When None, use ``subplot(N, 1, i)`` to create any necessary axes. - - .. note:: - - Changes from :py:func:`!tuneconfig` apply only to the configuration - and results in memory. Use the :py:func:`processfiles` function - to save them to disk. - - .. seealso:: :ref:`my-tuneconfig` tutorial - -.. py:function:: processfiles(filename=None, **kwargs) - - Process all input files again with the current configuration values. - This is a higher-level function than :py:func:`pdfgetter`, as - it also saves output files and produces plots as specified by the - :interactvar:`config` object. - - :arg filename: - One or more input files to be converted to PDFs and saved or - plotted according to the :py:data:`!config` settings. Use the - previous list of input files when not specified. - - :arg kwargs: - An optional keyword arguments to set for the :py:data:`!config` - object, for example ``(force="once", qmax=18)``. - - This function updates the :interactvar:`config.inputfiles ` - list and the :interactvar:`iraw`, :interactvar:`iq`, - :interactvar:`sq`, :interactvar:`fq` and :interactvar:`gr` - interactive variables. - -.. py:function:: clearsession() - - Clear all elements from the :interactvar:`config.inputfiles ` - and also the - :interactvar:`iraw`, :interactvar:`iq`, :interactvar:`sq`, - :interactvar:`fq` and :interactvar:`gr` variables. - - :return: - No return value. - -.. py:currentmodule:: diffpy.pdfgetx -.. autofunction:: loaddata - - This function can be imported from the - :py:mod:`!diffpy.pdfgetx` module. - -.. py:currentmodule:: diffpy.pdfgetx.plotdata -.. autofunction:: plotdata - - This function can be imported from the - :py:mod:`!diffpy.pdfgetx.plotdata` module. - -.. py:currentmodule:: diffpy.pdfgetx -.. autofunction:: findfiles - - This function can be imported from the - :py:mod:`!diffpy.pdfgetx` module. diff --git a/static_root/doc/pdfgetx/2.4.0/_sources/intro.rst.txt b/static_root/doc/pdfgetx/2.4.0/_sources/intro.rst.txt deleted file mode 100644 index 738ccc8f..00000000 --- a/static_root/doc/pdfgetx/2.4.0/_sources/intro.rst.txt +++ /dev/null @@ -1,71 +0,0 @@ -Introduction -======================================================================== - -diffpy.pdfgetx is a simple yet powerful software for converting X-ray or -neutron powder diffraction data to atomic Pair Distribution Functions -(PDFs). In addition, it also allows the extraction of PDFs from small-angle -scattering (SAS) data. The software includes three command line programs -PDFgetX3, PDFgetN3 and PDFgetS3 for processing X-ray, -constant-wavelength neutron and small-angle diffraction data -respectively. PDFgetX3, PDFgetN3 and PDFgetS3 can be used in a batch -mode to convert a series of data files without user intervention. The -programs can be also run in an interactive mode that allows to control -process parameters and plot the PDFs and any intermediate results. Users -can interactively tune the PDF processing parameters, visualize their effect on the results and adjust them to their optimum values. The programs are bundled with Python library diffpy.pdfgetx for PDF processing functions, which can be used in custom Python scripts. - - -.. index:: license - -License notice ------------------------------------------------------------------------- - -.. include:: ../../LICENSENOTICE.rst - - -.. index:: authors - -Authors ------------------------------------------------------------------------- - -This code was written by members of the Billinge Group at -Columbia University and Brookhaven National Laboratory including -Pavol Juhás, -Timur Davis, -Chia-Hao (Timothy) Liu, -Christopher Wright, -Christopher Farrow, -Connor J. Bracy, -Hung Vuong, -Songsheng Tao, -Simon Billinge. - - -.. index:: citations, references - -References ------------------------------------------------------------------------- - -If you use this program for a scientific research that leads -to publication, we ask that you acknowledge use of the program -by citing the following paper in your publication: - - P. Juhás and T. Davis, C. L. Farrow, S. J. L. Billinge - `PDFgetX3: A rapid and highly automatable program for processing - powder diffraction data into total scattering pair distribution - functions `__, - *J. Appl. Crystallogr.* **46**, 560-566 (2013) - -For research publications that use this software to process neutron -diffraction data we ask you to also cite: - - P. Juhás, J. N. Louwen, L. van Eijck, E. T. C. Vogt, - S. J. L. Billinge - `PDFgetN3: atomic pair distribution functions from neutron - powder diffraction data using ad hoc corrections - `__, - *J. Appl. Crystallogr.* **51** (2018) - -For research publications utilising the sasPDF utility, PDFGetS3, we ask you to acknowledge the use of the program by citing following paper in your publication: - - CH Liu, E. Janke, R. Li, P. Juhás, O. Gang, D. V. Talapin, S. J. L. Billinge - `sasPDF: pair distribution function analysis of nanoparticle assemblies from small-angle-scattering data `__. diff --git a/static_root/doc/pdfgetx/2.4.0/_sources/options.rst.txt b/static_root/doc/pdfgetx/2.4.0/_sources/options.rst.txt deleted file mode 100644 index b6334200..00000000 --- a/static_root/doc/pdfgetx/2.4.0/_sources/options.rst.txt +++ /dev/null @@ -1,412 +0,0 @@ -Options and parameters -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 - -PDFgetX3, PDFgetN3 and PDFgetS3 are very flexible in allowing users to customize -the actions of the program. They have a number of parameters that can -be specified either in configuration file or as command line options. -Here is a complete description of the parameters and options used by -either program. - - -.. Note :: - - The command line options start with a leading "-" and can - be only used as command line arguments when starting the - :program:`pdfgetx3` program. Within configuration file the parameter - names are plain words without any leading dashes. Finally, - parameters can be also set in the interactive mode as attributes of - the :interactvar:`config` object, but the assignments must be valid - Python statements. Here are examples of setting composition of - a processed specimen using each of these forms: - - #. assigned in configuration file:: - - ... - composition = CaTiO3 - ... - - #. set as a command-line option when starting :program:`pdfgetx3` or - :program:`pdfgetn3`:: - - pdfgetx3 --composition=CaTiO3 - - #. set in the IPython interactive mode:: - - pdfgetx3 -i - ... - In [1]: config.composition = "CaTiO3" - - -Program operation ------------------------------------------------------------------------- - -.. option:: -h, --help - - Display a brief usage information with a list of command line options - and exit. - -.. option:: -V, --version - - Display the program version and exit. - -.. option:: --manual - - Open this manual in a Web browser and exit. - -.. option:: -f, --find -.. _my-findpatterns: - - Select input files that match all patterns. The command - line arguments are by default taken as input files. However, - with the :option:`!--find` option they are processed as - file patterns and the matching files are then used as inputs. - The input files are by default searched in the current directory - unless there is a path entry (e.g., :file:`data/`) that - selects a different search path. The search patterns are - interpreted as fixed strings, all of which must be present - in the file name. A single argument ``+`` starts - a new group of patterns to match more files that are not - covered by one set of patterns. Additional pattern - groups reuse the current search path unless they provide - their own path value. Pattern groups containing only - a path entry reuse file patterns from the last group. - When pattern groups overlap the repeated matches are ignored - to make the resulting list of files unique. Files starting - with ``.`` are ignored unless there is ``^.`` pattern - that explicitly matches them. The search - syntax provides the following special patterns: - - .. tabularcolumns:: |l|p{0.75\textwidth}| - - +---------+------------------------------------------------------------+ - | ^ | match at the beginning of the string, i.e., ``^start`` | - | | matches only filenames that start with "start". | - +---------+------------------------------------------------------------+ - | $ | match at the end of string, for example, ``.chi$`` selects | - | | file names ending with ".chi". A ``$`` on its own | - | | matches every string and can be used to select all files. | - +---------+------------------------------------------------------------+ - | | match number *N* preceded by any number of leading zeros, | - | | e.g., ``<7>`` would match in "f7.chi", "f007.chi", but not | - | | in "f77.chi". | - +---------+------------------------------------------------------------+ - | | match an integer range from *N* to *M* inclusive. | - | | The matched number may have one or more leading zeros. | - +---------+------------------------------------------------------------+ - | <7-> | match number 7 or larger. | - +---------+------------------------------------------------------------+ - | <-7> | match number 7 or smaller. | - +---------+------------------------------------------------------------+ - | <-> | match any integer number. | - +---------+------------------------------------------------------------+ - | \+ | start a new pattern group, for example, ``.chi$ + .dat$`` | - +---------+------------------------------------------------------------+ - | / | set search path. An argument containing the ``/`` symbol | - | | is taken as the search path, for example, ``data/`` or | - | | ``./``. Each pattern group may provide its own search | - | | path effective for that and any subsequent pattern group. | - +---------+------------------------------------------------------------+ - - The ``^$<>`` characters are often special to Unix or Windows - command shells, therefore they need to be enclosed in double - quotes (\\") when used on command line. - - .. seealso:: tutorial on :ref:`my-findexamples` - -.. option:: -l, --list - - List all input files and exit. This is useful with the - :option:`!--find` option to verify if input files - are matched as intended. - - -Configuration file options ------------------------------------------------------------------------- - -.. option:: -c CONFIG, --config=CONFIG - - Read custom configuration file after loading the default ones. - Do not load any configuration file when "NONE". - -.. option:: -s NAME, --section=NAME - - Load the custom configuration file section ``[SectionName]`` after - loading the ``[DEFAULT]`` section. This is useful for creating - several configuration variants in a single configuration file. - -.. option:: --createconfig=FILE - - Write template configuration to a new FILE and exit. Write - to the standard output when FILE is "-". - -See also the :ref:`configuration file ` section -for further details. - -.. _my-ioparameters: - -Input and output options ------------------------------------------------------------------------- - -.. confval:: inputfile - - This parameter allows to specify one or more input files in the - configuration file, one file per line. The :confval:`!inputfile` - is only used if no input files were provided on the - :program:`pdfgetx3` or :program:`pdfgetn3` command line. - -.. confval:: dataformat -.. option:: --format=FORMAT - - Format of input files. Available formats are: ``twotheta``, ``QA``, - ``Qnm`` corresponding to a two-column text data where the first - column is either the scattering angle |twotheta| in degrees, *Q* in - inverse ångströms or *Q* in inverse nanometers. - -.. confval:: backgroundfile -.. option:: -b FILE, --background=FILE - - Optional datafile with background intensities from an empty sample - holder. It must be in the same dataformat as other input files. - -.. Note :: - - The following input is only used in ``sas`` mode. - -.. confval:: formfactorfile -.. option:: -ff FILE, --formfactorfile=FILE - - Form factor intensities of the scatterers. This is required for ``sas`` mode. The form factor file is expected to be in two-column format with (Q, f2avg) data or three-column format with (Q, f2avg, favg2) data. The unit of Q is required to be A^-1. - -.. _my-datapath: -.. confval:: datapath -.. option:: -d DATAPATH, --datapath=DATAPATH - - One or more extra directories to be searched for input or - background data files. The :option:`!-d` option can be specified - several times to add more directories, these are prepended in front - of any default value. Within configuration file the datapath - directories have to be listed each on a separate line. - - A special value "NONE" (or "none") clears any previously defined - paths and only the further paths, if any, would be searched for - inputs. - -.. confval:: output -.. option:: -o OUTPUT, --output=OUTPUT - - Output file name, write to the standard output when "-". The - :option:`-t, --outputtypes <-t>` option controls what results are - being saved. Normally the OUTPUT is used as a custom basename for - the output files. The OUTPUT may contain @f, @h, @r, @e, @t, @b, @o - tokens, which are expanded as follows: - - ===== ================== ======================================= - token example definition - ===== ================== ======================================= - @h dir1/dir2 the input file directory or "." - @r dir1/dir2/filename the input path with extension removed - @e dat the input file extension without "." - @t filename.dat the tail component of the input file - @b filename the tail component with extension removed - @o gr the output extension iq, sq, fq or gr - ===== ================== ======================================= - - An empty value works the same as "@b.@o" and saves the data - in the current directory with a proper extension for the - saved results. When "@o" is not present in the OUTPUT, it is - appended as a default filename extension. - -.. confval:: outputtypes -.. option:: -t TYPES, --outputtypes=TYPES - - Result types to be saved, one or more comma separated values. - Supported values are "iq", "sq", "fq", "gr", corresponding to the - |IQ|, |SQ|, |FQ| and |Gr| curves; these are also used as output - file extensions. - - Result files are not written when empty, "none" or "NONE". - -.. confval:: force -.. option:: --force=FORCE - - Overwrite existing output files. By default the output - files are not written if they already exist. Possible values - in a configuration file are "true", "yes", "on", "1" or - "false", "no", "off", "0" or "once". The special value "once" - permits one overwrite and then resets ``config.force`` to - ``False``. Note that in interactive mode the values assigned - to ``config.force`` are converted to Python :py:class:`bool` - unless equal to "once". - - -.. _my-pdfparameters: - -PDF parameters ------------------------------------------------------------------------- - - -.. confval:: mode -.. option:: --mode=STRING - - The PDF conversion mode, i.e., the name of the - :py:func:`.pdfgetter` setup. The available modes correspond - to the radiation type used in powder diffraction experiment and can - be "xray" or "neutron". - -.. confval:: wavelength -.. option:: -w FLOAT, --wavelength=FLOAT - - X-ray wavelength in ångströms. This value is required - for the "twotheta" dataformat in order to convert the scattering - angles |twotheta| to a momentum transfer *Q*. For other data formats - the wavelength is not necessary and may be left undefined. - -.. confval:: twothetazero -.. option:: --twothetazero=FLOAT - - Position of the zero scattering angle in diffractometer degrees. - This parameter corrects for a constant offset in the - measured |twotheta| values. When loading configuration file - it is assumed 0 unless specified otherwise. This parameter - is only effective for the "twotheta" dataformat. - -.. confval:: composition -.. option:: --composition=STRING - - Chemical composition of the sample. Supported formats are - "PbTi0.5Zr0.5O3", "Pb 1 Ti 1/2 Zr 1/2 O 3" or "CH3 (CH2)3 OH". - Space characters are ignored, unit counts can be omitted, but it is - important to use a proper upper and lower case in atom symbols. - Elements can appear several times in the formula, e.g., "CH3 CH3", - and the formula may contain parentheses or fractional - stoichiometries. - -.. confval:: bgscale -.. option:: --bgscale=FLOAT - - Scaling of the background intensities loaded from the - :confval:`backgroundfile`, by default 1. - -.. confval:: rpoly -.. option:: --rpoly=FLOAT - - *r*-limit for the maximum frequency in the |FQ| correction polynomial. - The PDF is unreliable at shorter *r*, however a - very small :confval:`!rpoly` would disable polynomial correction and - give noisy PDF. - Larger values produce closer fits with a higher degree polynomial, - but when too large, they might smooth-out a useful signal in the - data. The default is 0.9. - -.. confval:: qmaxinst -.. option:: --qmaxinst - - The *Q* cutoff for the meaningful input intensities in inverse - ångströms. Some data files may contain trailing zeros - or unreliable intensities at the upper bound of the detector range. - The :confval:`!qmaxinst` defines a threshold for unreliable data. - The parameter is also used as an upper boundary for the polynomial - fit correction of the |SQ| data. - -.. confval:: qmin -.. option:: --qmin - - The lower *Q*-limit for the Fourier transformation of the |FQ| curve - in inverse ångströms. - -.. confval:: qmax -.. option:: --qmax - - The upper *Q*-limit for the Fourier transformation of the |FQ| curve - in inverse ångströms. This is essentially a limit, where sample - signal decays to the level of data noise. - -.. confval:: terminationfunctions -.. option:: --terminationfunctions=LIST - - Optional list of termination functions to apply to the |FQ| data - before the Fourier transformation to the |Gr| curve. - - Termination functions help reduce termination ripples caused by the - finite *Q*-range. Each function tapers or truncates the F(Q) signal - between :confval:`qmin` and :confval:`qmax`. - - This parameter may be specified as: - - * a single function name from the supported list - * a list of comma-separated or space-separated function names, to be applied in order - * the alias ``terminationfunction`` is also accepted - - Supported function names: - - ``step`` - Hard cutoff window. Sets F(Q) = 0 for - Q < qmin or Q > qmax. - - ``lorch`` - Lorch window:: - - W(Q) = sin(pi * (Q - qmin) / (qmax - qmin)) - / (pi * (Q - qmin) / (qmax - qmin)) - - Applied only within the q-range; zero outside. - - Examples:: - - CLI usage:: - - --terminationfunctions=lorch - --terminationfunctions="lorch, step" - - Configuration file usage:: - - terminationfunctions = lorch - terminationfunctions = "lorch, step" - -.. confval:: rmin -.. option:: --rmin=FLOAT - - Lower bound of the *r*-grid for the calculated PDF in ångströms. - -.. confval:: rmax -.. option:: --rmax=FLOAT - - Upper bound of the *r*-grid for the calculated PDF in ångströms. - -.. confval:: rstep -.. option:: --rstep=FLOAT - - Spacing of the *r*-grid for the calculated PDF in ångströms. - - -Other parameters ------------------------------------------------------------------------- - -.. confval:: plot -.. option:: -p TYPES, --plot=TYPES - - Plot the specified results. A comma separated list with one or - more items from "iq", "sq", "fq", "gr". No plot is produced when - empty, "none" or "NONE". Setting this option turns on the - interactive mode. - -.. confval:: interact -.. option:: -i, --interact - - Start an IPython interactive session after processing all files. - Useful for tuning the configuration parameters or interactive - plotting. This is always on when plot option has been set. - See also :doc:`interact` for further details. - -.. confval:: verbose -.. option:: --verbose=VALUE - - Level of detail for the program to report about its actions. - Possible values are "error", "warning", "info", "debug", "all" or an - integer number from 0 to 5. Messages are completely suppressed when - 0, all messages are printed when verbose is 5 ("all") or higher. - This option is useful for diagnostics of any unexpected behavior - in the program. diff --git a/static_root/doc/pdfgetx/2.4.0/_sources/plotdata.rst.txt b/static_root/doc/pdfgetx/2.4.0/_sources/plotdata.rst.txt deleted file mode 100644 index d1c02156..00000000 --- a/static_root/doc/pdfgetx/2.4.0/_sources/plotdata.rst.txt +++ /dev/null @@ -1,161 +0,0 @@ -.. index:: plotdata (program) -.. _cmd-plotdata: - -The plotdata program -======================================================================== - -.. include:: abbreviations.txt -.. program:: plotdata - -The PDFgetX3 software includes a simple stand-alone utility -:program:`plotdata` for plotting text data files. In most cases -this program can be invoked from a command-shell as :: - - plotdata file1.dat file2.dat - -which plots the numerical data from the text files :file:`file1.dat`, -:file:`file2.dat` together in a single graph. By default the first -column is used as an *x* variable and the second column is used for the -*y* values. After displaying the plot the program starts an `IPython`_ -interactive session allowing the user to modify or save plots. The -IPython session is initialized with the :data:`!filenames` variable -containing a list of plotted files. It also pre-loads the -|plotdata| and |findfiles| functions just as in PDFgetX3 -interactive session. The :py:func:`!plotdata` -function works in a similar way as the :program:`plotdata` program, -just its arguments need to be passed as Python function arguments -instead of command-line options. Thus an equivalent call of the -:py:func:`!plotdata` function would be:: - - In [1]: plotdata(['file1.dat', 'file2.dat']) - - -Selecting files ------------------------------------------------------------------------- - -The :program:`plotdata` program includes a file searching feature -that is useful for selecting a set of files in large -directories. It is also convenient for Windows operating systems, -where the command prompt cannot do filename expansion for patterns -such as ``*.dat``. The file search feature is controlled by the -following options: - -.. option:: -f, --find - - Use command line arguments as filename patterns and plot all matching - files. This option works in the same way as for - :program:`pdfgetx3`, for full details see the - :option:`pdfgetx3 --find ` documentation. Note that - within command line the special patterns ``^$<>`` need to be quoted - in double quotes (\\") so they are not processed by command shell. - -.. option:: -l, --list - - List the input files and exit. This is useful in conjunction - with the :option:`!-f, --find` option to check if data files - are selected as intended. - -Assuming the current directory contains 20 files named -:file:`file1.dat`, :file:`file2.dat`, ..., :file:`file20.dat`, -the plotting of files 9 to 13 could be done (with a check listing) -as follows :: - - $ plotdata -fl "<9-13>.dat" - file9.dat - file10.dat - file11.dat - file12.dat - file13.dat - $ plotdata -f "<9-13>.dat" - -Within an interactive IPython session the equivalent plot could be -produced by combining the |plotdata| and |findfiles| functions as :: - - In [1]: plotdata(findfiles("<9-13>.dat")) - - -Selecting x and y data ------------------------------------------------------------------------- - -The :program:`plotdata` program provides several ways of selecting -columns for *x* or *y* data and for specifying plot markers or line -formats. The columns can be specified using their integer index, -but one needs to keep in mind the index of the first column is "0" -as per Python indexing conventions. Here is a list of options -supported by the plotdata program (and function): - - -.. option:: -x X - - index or name of the *x*-column to plot. See the :option:`-y` option - for the supported syntax, but note that ``X`` may select only one - column. When set to "." use the data-row index for *x*. - -.. option:: -y Y - - index or name of the *y*-column or columns to plot. The ``Y`` column - specification can be a comma separated list of indices, column names - or Python-like ranges, for example "1,2", "G", "1:4" (START:STOP, - same as "1,2,3"), "1:4:2" (START:STOP:STEP, same as "1,3"), or - "-2:" (same as "-2,-1", i.e, the last 2 columns). Because column - indexing starts at "0" the second column must be specified as "1". - - The column names work if the data section in the file is preceded by - a headline of unique column names, for example:: - - x square cube - 1 1 1 - 2 4 8 - 3 9 27 - 4 16 64 - - For such data file the plotdata program will recognize column names - "x", "square" and "cube" and an implicit "." for row index. - -.. option:: -s STYLE, --style=STYLE - - optional plot format specification. See the - :func:`matplotlib.pyplot.plot` function - for a list of available formats. - -.. option:: -L LOG, --log=LOG - - axes to be plotted with logarithmic scaling, for example, "x", "y" or - "xy". Axes not listed in ``LOG`` will use linear scaling. - -.. option:: -h, --help - - display a brief usage info and exit. - -.. option:: -V, --version - - show program version and exit. - -.. option:: --manual - - Open this manual page in a Web browser and exit. - - -Examples ------------------------------------------------------------------------- - -The examples directory :file:`plotdata` contains a :file:`sincos.dat` -file that has 3-columns of values labeled as "x", "sin" and "cos". -Here are several examples of the :program:`plotdata` capabilities -when used from command line - the user is encouraged to try them out:: - - plotdata sincos.dat - plotdata -y 1,2 sincos.dat - plotdata -x . -y 0:3 sincos.dat - plotdata -y cos sincos.dat - plotdata -x sin -y cos -sr-- sincos.dat - -An equivalent usage from a general IPython session would be:: - - ipython --matplotlib=auto - In [1]: from diffpy.pdfgetx.plotdata import plotdata - In [2]: plotdata('sincos.dat') - In [3]: plotdata('sincos.dat', y=[1,2]) - In [4]: plotdata('sincos.dat', x='.', y=':3') - In [5]: plotdata('sincos.dat', y='cos') - In [6]: plotdata('sincos.dat', x='sin', y='cos', style='r--') diff --git a/static_root/doc/pdfgetx/2.4.0/_sources/quick-start.rst.txt b/static_root/doc/pdfgetx/2.4.0/_sources/quick-start.rst.txt deleted file mode 100644 index b0b01faa..00000000 --- a/static_root/doc/pdfgetx/2.4.0/_sources/quick-start.rst.txt +++ /dev/null @@ -1,163 +0,0 @@ -Quick-start guide -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 - -This guide assumes that the software has been correctly installed and -its command line programs PDFgetX3, PDFgetN3 and PDFgetS3 can be -executed by typing :program:`pdfgetx3`, :program:`pdfgetn3`, or -:program:`pdfgets3` in a shell window. Please, refer to the :doc:`installation ` section if this is not working yet. - -.. index:: pdfgetx3 (program) -.. _cmd-pdfgetx3: - -pdfgetx3 command ------------------------------------------------------------------------- - -The pdfgetx3 program is a command-line application, therefore all -the input files and run-parameters are supplied either as command-line -arguments or through a configuration file. In general, the pdfgetx3 is -executed from a command shell as :: - - pdfgetx3 [options] input1 input2 ... inputN - -The :file:`inputN` stands for an input powder diffraction data. The -:file:`inputN` file is a simple two-column text file, where the first -column corresponds to either the |twotheta| diffraction angle, or a -momentum transfer, *Q*, in inverse nanometer or inverse ångström units. -The second column contains the corresponding X-ray intensities. The -input file may start with a header containing comments or metadata -related to the measurement. PDFgetX3 will ignore any text leading to a -long two-column section. The example input files in this manual were -created with the -`FIT2D program `_ using -its "chi" output format, thus we will also refer to them as "chi-files". -A typical content of a "chi" file looks as follows: - -.. code-block:: none - - Pt_bulk-00055.tif: 2-theta Scan - 2-Theta Angle (Degrees) - - 1465 - 2.0003892E-02 0.0000000E+00 - 6.0011677E-02 0.0000000E+00 - 1.0001946E-01 0.0000000E+00 - 1.4002724E-01 0.0000000E+00 - 1.8003502E-01 0.0000000E+00 - ... - -The command-line options are arguments that start with a dash "-" and -are used to specify run-parameters or modify the program behavior. The -options can be specified in a short form that consists of a dash and -a single character, or in a long, more descriptive format starting with -a doubled dash ``--``. Options may require values. For short options, -the value may be joined to the option string, for example -:option:`!-w0.142774`, while for the long options it has to be separated -with an equal sign, e.g., :option:`!--wavelength=0.142774`. Although -all the PDF calculation parameters can be passed as command line -options, it is often more convenient to set them in a configuration -file. When run parameter is present both in a configuration file and -as command-line option, the command-line value takes precedence. The -command-line options are all described in the :doc:`options` section of -this manual. A brief summary of options can be also displayed by -executing :: - - pdfgetx3 --help - -The best way of getting familiar with PDFgetX3 is to process -the example diffraction data described in the :doc:`tutorial`. -In general, the first step is to create a commented configuration file ``pdfgetx3.cfg`` using:: - - pdfgetx3 --createconfig=pdfgetx3.cfg - -The configuration file can have any name, but it is preferable -to use either :file:`pdfgetx3.cfg` or :file:`.pdfgetx3.cfg`, -for these files are automatically loaded by PDFgetX3. All -other configuration files must be passed explicitly to the program -using the :option:`-c, --config <-c>` option. - -Open the pdfgetx3.cfg file in a **text** editor. The lines that -start with a hash mark ``#`` are comments and are not used. The lines -starting with a right brace ``[`` denote sections in the configuration -file. The active lines are all formatted as -"NAME=VALUE". Although PDFgetX3 has many options, in general only a few -of them are critical for the PDF calculation: - -* :confval:`dataformat` -- specifies the input data format - -* :confval:`wavelength` -- radiation wavelength in Å required for the - "twotheta" format. - -* :confval:`composition` -- chemical composition of the sample - -* :confval:`qmaxinst` -- upper *Q* boundary for a meaningful measurement - intensities. - -* :confval:`qmax` -- *Q*-cutoff for the Fourier transformation that - yields the PDF. - -Save the updated configuration file and run pdfgetx3 on the input data -:file:`FILENAME.chi` as :: - - pdfgetx3 --verbose=info -t gr FILENAME.chi - -Here the :option:`--verbose=info <--verbose>` option makes pdfgetx3 -print -more information about its operation. This helps to verify -if the configuration file is indeed loaded and if the parameter -values are assigned as intended. The PDFgetX3 will not write -any output files unless told so. The :option:`-t gr <-t>` option -tells the program to save the final |Gr| curve as a -:file:`FILENAME.gr` file in the working directory. - -The saved .gr file contains a header with all the calculation -parameters and the input file name. The .gr file can be therefore -also used as a configuration file in order to redo the same -calculation :: - - pdfgetx3 -c FILENAME.gr --plot=fq,gr - -Note this command does not include any .chi file and this will as -a result process the previously used input :file:`FILENAME.chi`. -The :option:`--plot=fq,gr <-p>` option tells PDFgetX3 to -display 2 plots for the reduced structure function |FQ| and the -final PDF |Gr|. The :option:`!--plot` option also implies an -:doc:`interactive mode ` -therefore the program does not exit, but starts an -interactive `IPython`_ session. To exit the interactive mode, -type ``exit()`` and press Enter. - -.. index:: pdfgetn3 (program) -.. _cmd-pdfgetn3: - -pdfgetn3 command ------------------------------------------------------------------------- - -The pdfgetx3 and pdfgetn3 programs operate in a very similar fashion -apart from being set to assume X-ray and neutron data respectively. -The type of the scattering data can be also specified using the -:option:`--mode` option. Running ``pdfgetn3`` is nearly identical -to executing ``pdfgetx3 --mode=neutron``. The only difference between -these commands is that pdfgetx3 checks for configuration files -:file:`pdfgetx3.cfg` and :file:`.pdfgetx3.cfg`, whereas -pdfgetn3 looks for :file:`pdfgetn3.cfg` and :file:`.pdfgetn3.cfg`. - -.. index:: pdfgets3 (program) -.. _cmd-pdfgets3: - -pdfgets3 command ------------------------------------------------------------------------- - -The pdfgets3 program is virtually the same as its counterparts for x-ray -(pdfgetx3) and neutron (pdfgetn3) diffraction data. The only difference -is that instead of referencing the well documented x-ray or neutron -scattering form factor data, a user-defined form factor data is used -for getting the PDF from a small-angle scattering (SAS) data. This -behavior is enabled by specifying ``mode = sas`` in the configuration -file or in the command line tool. The pdfgets3 program by default -searches for a configuration named :file:`pdfgets3.cfg` and -:file:`.pdfgets3.cfg` in order, when no configuration file is specified. - -Please refer to the :doc:`tutorial section ` for a step-by-step processing of the example data files and for demonstration of the capabilities in PDFgetX3, PDFgetN3 and PDFgetS3. diff --git a/static_root/doc/pdfgetx/2.4.0/_sources/release.rst.txt b/static_root/doc/pdfgetx/2.4.0/_sources/release.rst.txt deleted file mode 100644 index 37192085..00000000 --- a/static_root/doc/pdfgetx/2.4.0/_sources/release.rst.txt +++ /dev/null @@ -1,3 +0,0 @@ -.. index:: release notes - -.. include:: ../../CHANGELOG.rst diff --git a/static_root/doc/pdfgetx/2.4.0/_sources/tutorial.rst.txt b/static_root/doc/pdfgetx/2.4.0/_sources/tutorial.rst.txt deleted file mode 100644 index b4462494..00000000 --- a/static_root/doc/pdfgetx/2.4.0/_sources/tutorial.rst.txt +++ /dev/null @@ -1,819 +0,0 @@ -Tutorial -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 -.. index:: example files -.. py:currentmodule:: diffpy.pdfgetx - -In this tutorial we will convert several X-ray powder diffraction -patterns to corresponding PDFs. The examples can be obtained by -doing the following:: - - $ pdfgetx3 --list-examples - - Ni - plotdata - Au_DNA_NPA - Multiple_Background_Subtraction - Pt - CeO2 - n-Sapphire - n-twothetazero-fit - Si90Ni10 - Menthol - BaTiO3 - - $ pdfgetx3 --example Ni - - Example copied to: .../Ni - - -.. index:: examples - -Nickel X-ray PDF ------------------------------------------------------------------------- - -predefined configuration file -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - - -Change to the :file:`Ni` directory. The file named -:file:`ni300mesh_300k_nor_1-5.chi` contains powder X-ray data -measured from nickel at the Advanced Photon Source beamline -6ID-D. The file contains two columns for the |twotheta| scattering -angles and X-ray intensities. The second file -:file:`kapton_bgrd_300k_nor_2-3.chi` contains the background -measurement, i.e., the intensities from an empty capillary. -Finally, the :file:`pdfgetx3.cfg` contains a complete configuration -parameters for converting the powder pattern to a PDF. Since all -processing parameters are already defined in the configuration file, -the first PDF calculation is very simple and involves running the -:ref:`pdfgetx3 ` program -with the powder data file as an argument:: - - $ pdfgetx3 ni300mesh_300k_nor_1-5.chi - -For the first run there should be no output on the screen, -however a new file, :file:`ni300mesh_300k_nor_1-5.gr` should appear -in the work directory. -We can use the :ref:`plotdata ` program, -included with this software, to plot the output data:: - - $ plotdata ni300mesh_300k_nor_1-5.gr - -This will open a graph window and start an `IPython`_ interactive session. -To exit and close the figure, type ``exit()`` on the IPython prompt. -Let's run the program again, but now with a -:option:`--verbose=info <--verbose>` -option, to show more details about the program actions. :: - - $ pdfgetx3 --verbose=info ni300mesh_300k_nor_1-5.chi - - INFO:applying pdfgetx3 defaults - INFO:set config.mode = xray - INFO:searching for default config file /home/user/.pdfgetx3.cfg - INFO:searching for default config file .pdfgetx3.cfg - INFO:searching for default config file pdfgetx3.cfg - INFO:loaded default config file pdfgetx3.cfg - INFO:reset config.twothetazero = 0.0 - INFO:parsing config file section [DEFAULT] - INFO:set config.dataformat = twotheta - INFO:set config.backgroundfile = kapton_bgrd_300k_nor_2-3.chi - INFO:set config.outputtypes = gr - INFO:set config.wavelength = 0.142774 - INFO:set config.composition = Ni - INFO:set config.qmaxinst = 26.5 - INFO:set config.qmax = 26.0 - INFO:set config.rmin = 0.0 - INFO:set config.rmax = 30.0 - INFO:set config.rstep = 0.01 - INFO:finished parsing config file - INFO:processing command line options - INFO:set config.verbose = info - INFO:finished with command line options - INFO:using 1 input files from the command line. - INFO:configuring PDFGetter mode 'xray' - INFO:calling config_xray - INFO:started PDF processing. - INFO:processing 'ni300mesh_300k_nor_1-5.chi' - INFO:resolved output file '' as 'ni300mesh_300k_nor_1-5.gr' - WARNING:ni300mesh_300k_nor_1-5.gr already exists. - WARNING:Use "--force=yes" or "--force=once" to overwrite. - INFO:elapsed time: 0.095 - -Here we can see what configuration files are searched, which of them -get loaded and what are the effective values of the processing -parameters. Unless the :option:`!--verbose` option is in effect, the -program will show only messages that have either WARNING or ERROR -importance. The warning line above indicates no output has been -written, because that file already exists. This safety check can be -overruled with the :option:`--force=yes <--force>` option, upon -which pdfgetx3 would overwrite any existing files. - -PDFgetX3 output files start with a header that lists all the processing -parameters and can be used as a valid configuration file with the -:option:`-c` option. Another option, :option:`--plot=[iq,sq,fq,gr] -<-p>` turns on plotting of the final PDF or of some other result. A -side effect of the :option:`!--plot` option is that pdfgetx3 starts in -an interactive mode, so the user can manipulate or save the plots. To -put it all together, we are now going to redo the original PDF and plot -its reduced total scattering function |FQ| and the PDF curve |Gr|. This -time the chi file is not necessary, because the input file is already -listed in the gr file that is now used as a custom configuration:: - - $ pdfgetx3 -c ni300mesh_300k_nor_1-5.gr --plot=fq,gr - - WARNING:ni300mesh_300k_nor_1-5.gr already exists. - WARNING:Use "--force=yes" or "--force=once" to overwrite. - - Variables related to PDF processing: - - pdfgetter -- PDFGetter used for calculation. - config -- configuration data used by PDFGetter. - See config.inputfiles for a list of inputs. - iraw -- matrix of input raw intensities with 2 rows per file. - iq sq fq gr -- intermediate results per each input file stored - as matrix rows. - - Functions: - - tuneconfig -- dynamically tune configuration variables. - processfiles -- process specified data files. - clearsession -- clear all elements from the inputfiles, iraw, - iq, sq, fq and gr variables. - plotdata -- plot all or selected columns from a text data file. - loaddata -- load all or selected columns from a text data file. - findfiles -- search for files matching the specified patterns. - - Use "%pdfgetx3" for a fresh run without exiting IPython. - In [1]: - -This will open a plot figure similar to - -.. image:: images/nickelfqgr.png - -Because of the :doc:`interactive mode ` implied by plotting, -the program enters an IPython session. -The IPython environment is preloaded with several extra functions -and variables related to the PDF processing. For example, the -:interactvar:`config` variable stores all the configuration parameters, -and its content can be displayed with the :py:func:`print` -function as :: - - In [1]: print(config) - - configfile = ni300mesh_300k_nor_1-5.gr - configsection = DEFAULT - dataformat = twotheta - ... - qmax = 26.0 - ... - -The :py:func:`.processfiles` function allows to redo the -whole calculation and plotting process for additional input files or -for new parameter values. To plot the |FQ| and |Gr| -curves calculated at |Qmax| = 22 |Ainv|, we can call -:py:func:`!processfiles` and pass it a keyword argument for -the new qmax as follows:: - - In [2]: processfiles(qmax=22) - - # the qmax parameter was updated to a new value, thus - In [3]: config.qmax - Out[3]: 22 - -There should be now two lines in each plot axis corresponding to -the results at |Qmax| equal 26 and 22 |Ainv|. To exit the program, -type ``exit()``. - - -processing from scratch -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -We have already encountered the command-line :option:`option -c <-c>` -for specifying a custom configuration file. A special argument "NONE", -will make pdfgetx3 ignore any configuration files and start up in a -default state. We can use this feature to process the nickel PDF as if -we did not have any configuration file:: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi - - WARNING:Nothing to do, use "-t" or "--plot" options. - ERROR:Configuration error: wavelength not specified. - ERROR:See "--help" for more hints. - -There is an error, for the wavelength is necessary to convert -the scattering angle |twotheta| to momentum transfer *Q*. The -X-ray wavelength was 0.142774 Å, which can be passed with the -:option:`-w, --wavelength <-w>` option:: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 - - ... - ERROR:Configuration error: Chemical composition not known. - ERROR:See "--help" for more hints. - -There is still an error. The PDF calculation needs an average -X-ray scattering factor of the material, which is obtained from -sample chemical composition. The composition can be specified -with the :option:`--composition` option. The example -below uses a "\\\\" character to indicate the command continues -on the next line. Such syntax works in Unix terminals, but -on Windows the command has to be typed all on a single line:: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \ - --composition=Ni - - WARNING:Nothing to do, use "-t" or "--plot" options. - ... - -There was no error message this time, but the program complains -about a lack of action. The pdfgetx3 program does not write any results -unless instructed by the :option:`-t, --outputtypes <-t>` option. -The outputtypes option recognizes the following result types: -"iq", "sq", "fq", "gr". One or more of these type strings, -separated by a comma, can be included with the -:option:`!-t` option, which will produce the corresponding -output files. An empty string, such as ``-t ""``, or ``-t NONE`` -may be used to clear any outputtypes defined in the configuration file, -and avoid the unseemly file-exists warnings. - -At this point, we will not write any output files, but will use the -:option:`--plot <-p>` option to display the calculated curves. The -:option:`!--plot` accepts the same arguments as outputtypes, so to -display the |FQ| and |Gr| curves we shall run :: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \ - --composition=Ni --plot=fq,gr - - WARNING:qmaxinst reset to last nonzero point qmaxinst=28.0865680161 - WARNING:qmax reset to the data boundary qmaxinst=28.0865680161 - -which should open the following plot window: - -.. image:: images/nickelfqgrnoisy.png - -The graphs look terrible. The PDF is very noisy and the |FQ| curve -shows a sudden break at about 27 |Ainv|. What happened? The powder -intensities are inaccurate at a very top of the detector angular range. -The interactive session is setup with -:interactvar:`iraw`, :interactvar:`iq`, :interactvar:`sq`, -:interactvar:`fq`, :interactvar:`gr` -variables for the original raw data and intermediate results. We -are going to plot the "iq" variable that has the input intensities -resampled on the *Q* grid. The matplotlib function -:py:func:`~matplotlib.pyplot.clf` clears the figure, -the iq variable is a two-row matrix with *Q* and *I* rows, and the -:py:func:`~matplotlib.pyplot.axis` -function lets us zoom to a given range:: - - In [1]: clf() - In [2]: plot(iq[0], iq[1]) - Out[2]: [] - In [3]: axis([20, 29, 0, 3000]) - Out[3]: [20, 29, 0, 3000] - -The graph shows a sudden drop in the raw intensities at 27 |Ainv|. -The :confval:`qmaxinst` variable defines a *Q* cutoff for a meaningful -instrument intensities and, to be on a safe side, we are going to set -it to 26.5 |Ainv| :: - - In [4]: processfiles(qmaxinst=26.5) - WARNING:qmax reset to the data boundary qmaxinst=26.5 - -The updated curves looks reasonable without any oscillations and -breakpoints. The :py:func:`.tuneconfig` function provides a -GUI-driven way for visualizing the processing parameters and their -effect on the results. Type ``tuneconfig()`` to execute the function, -which should open a new window with several sliders. Try to move -different sliders and see how do the |FQ| and |Gr| curves change. -The :confval:`rpoly` parameter controls the degree of data-correction -polynomial and is an approximate low-*r* bound of reliable *G* -values. Once the parameters are tuned, they may be set to -exact values. We will also turn on the writing of the |Gr| -curve and save it to an output file :file:`nicmd.gr`:: - - In [14]: config.qmax = 26 - In [15]: config.outputtypes = 'gr' - In [16]: config.output = 'nicmd' - In [17]: processfiles() - - -Platinum X-ray series ------------------------------------------------------------------------- - -PDFgetX3 has been designed to handle large series of data files. -With the fast area-detectors it is easy to measure hundreds of X-ray -patterns in a time or temperature series. Normally, these input -files need to be entered as command line arguments to the pdfgetx3 -program. This is usually no problem with Unix-like shells, which -expand filename patterns to a list of matching files. -However, such file generation is in general not available on Windows. -The input file names tend to include scan numbers which are useful -for selecting desired data, yet even with Unix shells it is -difficult to match a range of scan numbers -(`z-shell `_ being a notable exception). - -.. _my-findexamples: - -matching input files -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -The :program:`pdfgetx3` program includes a built-in function for finding -a set of input files. The command line arguments are normally taken as -input file names. However, if the :option:`-f, --find <-f>` option is -present, the arguments are understood as patterns and the program looks -for files that match ALL of them. Another option -:option:`-l, --list <-l>` makes pdfgetx3 print out the matching files -without any other action, which can be used to verify if the patterns -match intended files. - -We will try out this file search on platinum example files. Open a -terminal and navigate to the :file:`Pt` directory. There should be a -:file:`series` subdirectory with 6 chi files indexed from 903 to 908. -At first, let's stay in the :file:`Pt` directory and run the following -command :: - - $ pdfgetx3 --list --find - - Pt_bulk-00055-pdfgetx2.gr - Pt_bulk-00055-pdfgetx3.gr - Pt_bulk-00055.chi - empty_capillary-00032.chi - pdfgetx3.cfg - plotpdfcomparison.py - -Without any patterns the file search matches all files in the current -directory. Now let's try to add name patterns. There are few special -patterns, for example ``^`` matches at the beginning of the filename, ``$`` at the end and ```` matches a range of integer values from -*N* to *M*. The patterns containing ``^$<>`` need to be quoted as -these characters have special meaning in the shell. Here are some -examples how it works. - -Filenames containing "y":: - - $ pdfgetx3 --list --find y - empty_capillary-00032.chi - plotpdfcomparison.py - -Filenames that containing both "y" and "chi", here we use the -options :option:`!--list` and :option:`!--find` in an abbreviated -form :option:`!-l` and :option:`!-f`:: - - $ pdfgetx3 -lf y chi - empty_capillary-00032.chi - -Filenames that start with "e":: - - $ pdfgetx3 --list --find "^e" - empty_capillary-00032.chi - -Filenames that contain *character* "2":: - - $ pdfgetx3 --list --find 2 - Pt_bulk-00055-pdfgetx2.gr - empty_capillary-00032.chi - -Filenames that contain *numeric value* "2":: - - $ pdfgetx3 -lf "<2>" - Pt_bulk-00055-pdfgetx2.gr - -The special argument ``+`` starts a new group of patterns to -generate extra files when they cannot be all covered by -a single set of patterns. For example, to match files that -contain contain both "bulk" and "chi" substrings and then -also those that have "empty" and "chi" in their names, use:: - - $ pdfgetx3 -lf bulk chi + empty chi - Pt_bulk-00055.chi - empty_capillary-00032.chi - -When pattern groups overlap the resulting matches are -made unique and each file is listed only once :: - - $ pdfgetx3 -lf bulk chi + chi - Pt_bulk-00055.chi - empty_capillary-00032.chi - - -data search path -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -Each group of PDFgetX3 patterns can have one entry containing -forward slash "/" to specify a non-current path that is searched -for input files. The path specification affects the current and -the following pattern groups unless they provide their own path. -The chi files numbered "903" to "905" and "908" from the -:file:`series` subdirectory can be therefore matched using :: - - $ pdfgetx3 -lf series/ "<903-905>" + 908 - series/Pt_bulk_ramp03-00903.chi - series/Pt_bulk_ramp03-00904.chi - series/Pt_bulk_ramp03-00905.chi - series/Pt_bulk_ramp03-00908.chi - -The current directory can be selected using `./` :: - - $ pdfgetx3 -lf series/ 903 + ./ bulk chi - series/Pt_bulk_ramp03-00903.chi - Pt_bulk-00055.chi - -When additional pattern groups contain only the path -argument, they reuse the existing set of patterns. The -".chi"-ending files in the current and :file:`series` -directories can be thus found using :: - - $ pdfgetx3 -lf ".chi$" + series/ - Pt_bulk-00055.chi - empty_capillary-00032.chi - series/Pt_bulk_ramp03-00903.chi - series/Pt_bulk_ramp03-00904.chi - series/Pt_bulk_ramp03-00905.chi - series/Pt_bulk_ramp03-00906.chi - series/Pt_bulk_ramp03-00907.chi - series/Pt_bulk_ramp03-00908.chi - - -output file names -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -By default the output files are saved in the current directory. The -output path, can be changed with the :option:`-o, --output <-o>` option. -The :option:`!-o` recognizes several tokens that are replaced with -parts of the input file name, for example, "@b" expands to an -extension-stripped base name. In similar faction, "@o" is replaced -with the output type extension. Thus to generate PDFs for all files -in the :file:`series` directory and save them in the -:file:`series-gr` subfolder do :: - - $ pdfgetx3 --find series/ "<900-910>.chi" --output=series-gr/@b.@o - -The extension ".@o" is automatic when not included anywhere in the -output file name. Thus to process the Pt series at |Qmax| = 18 |Ainv| -while saving the results in the same folder, but with a "_qmax18" suffix -in their filenames do :: - - $ pdfgetx3 --find series/ "<900-910>.chi" --qmax=18 -o series-gr/@b_qmax18 - -For input file :file:`Pt_bulk_ramp03-00903.chi` the :option:`!-o` option -above expands to output path :file:`series-gr/Pt_bulk_ramp03-00903_qmax18.gr`. -The :file:`series-gr` directory should now contain 12 "gr" files, -6 of them processed at |Qmax| = 27 |Ainv| as given by configuration -file and 6 others processed at |Qmax| = 18 |Ainv|. - -.. seealso:: :option:`-o, --output <-o>` for a list of output tokens - -.. index:: tuneconfig (example) -.. _my-tuneconfig: - -Interactive tuning of parameters ------------------------------------------------------------------------- - -One of the most powerful features of PDFgetX3 is the ability to tune -PDF processing parameters in an interactive mode and immediately -visualize their effect on the results. To demonstrate this feature, -navigate to the :file:`Ni` directory in the shell and process -the nickel PDF while plotting the |FQ| and |Gr| curves. -Because of plotting the program will open an interactive IPython -session. The tuning mode can be then entered by calling the -:py:func:`.tuneconfig` -function from the IPython environment :: - - $ pdfgetx3 --plot=fq,gr ni300mesh_300k_nor_1-5.chi - ... - In [1]: tuneconfig() - -The -:py:func:`!tuneconfig` -function will by default add a second set of live lines -for the plotted curves and open a GUI dialog with sliders for the -tunable process parameters. Changing any slider would immediately -recalculate the PDF and update live lines in the plot. - -.. image:: images/tunenickelfqgr.png - -The *constant data scale* check-box rescales the result curves to a -constant maximum value. This is useful for assessing if a parameter -change produces different curve shape or if it just rescales the -results. The tunable parameters are described in the -:ref:`PDF parameters section `. -Only the active parameters are displayed in the tuneconfig GUI, -thus there would be no slider for the :confval:`bgscale` parameter -if PDF has been processed without any background data. - -By default the -:py:func:`!tuneconfig` -function displays the same curves as -specified by the :option:`--plot <-p>` option, however it can be -configured to show arbitrary intermediate results or even visualize -selected steps in the PDF processing. We shall demonstrate this by -showing a live-plot of the polynomial correction together with the final -PDF. At first, we shall use the :py:meth:`!describe` method of the -:py:func:`.pdfgetter` object to print out the chain of -transformations involved in the PDF processing and obtain a reference to -the transformation object *t4* that applies the polynomial correction. -The transformation object can be then included in a list of plot -identifiers that are passed to the :py:func:`!tuneconfig` function :: - - $ pdfgetx3 -i ni300mesh_300k_nor_1-5.chi - ... - Use "%pdfgetx3" for a fresh run without exiting IPython. - - In [1]: fig, ax = subplots(2) - In [2]: pdfgetter.describe() - 0 TransformTwoThetaToQA - convert x data from twotheta to Q in 1/A - 1 TransformQGridRegular - Remove the data outside the (qmin, qmaxinst) range - 2 TransformBackground - subtract background intensity - 3 TransformXrayASFnormChris - scale and normalize intensities by x-ray scattering factors - 4 TransformSQnormRPoly - Normalize S(Q) by fitting a polynomial - 5 TransformSQToFQ - Convert S(Q) to F(Q). - 6 TransformFQgrid - Resample F(Q) to a regular grid suitable for FFT - 7 TransformFQToGr - Convert F(Q) to G(r). - In [3]: t4 = pdfgetter.getTransformation(4) - In [4]: tuneconfig([t4, 'gr'], axeslist=ax) - In [5]: ax[0].legend(loc=2) - -The :py:func:`~matplotlib.pyplot.subplots` function above -is to create a new figure with 2 axes on top of each other. -Overall, the code above should display the following plot -and a GUI window: - -.. image:: images/tunenickelt4gr.png - -The tuning can be finished by clicking the ``Done`` button or closing the -tuneconfig GUI window. The parameter values can be thereafter adjusted -to a rounded values by setting an attribute of the :interactvar:`config` -object, for example:: - - In [5]: config.bgscale = 1.5 - -Finally, to save the new results, we shall first confirm -:confval:`outputtypes` have been correctly set and then use the -:py:func:`.processfiles` function to redo the calculations, plots and -data output for the updated configuration. Note that the -:py:func:`!processfiles` function accepts keyword arguments for -configuration parameters. This is used at line ``In [8]`` to -turn on the :confval:`force` flag and is in effect a shortcut -for an extra ``config.force = True`` statement. :: - - In [6]: config.outputtypes - Out[6]: ['gr'] - In [7]: processfiles() - WARNING:ni300mesh_300k_nor_1-5.gr already exists. - WARNING:Use "--force=yes" or "--force=once" to overwrite. - In [8]: processfiles(force=True) - -:file:`ni300mesh_300k_nor_1-5.gr` was successfully saved at an -updated configuration for there were no warnings after the last call. - - -Neutron PDF ------------------------------------------------------------------------- - -This example illustrates PDF extraction from -neutron powder data using :ref:`pdfgetn3 `. -Navigate to the :file:`n-Sapphire` directory in the shell. -The :file:`sapphire755.dat` file contains powder diffraction data from -sapphire (α-Al\ :sub:`2`\ O\ :sub:`3`) -measured at the constant-wavelength PEARL instrument -at the Delft University of Technology. -The :file:`pdfgetn3.cfg` configuration file specifies -processing parameters such as :confval:`wavelength`, -:confval:`twothetazero`, :confval:`composition`, and :confval:`mode`. - -To extract the sapphire neutron PDF run :: - - $ pdfgetn3 --verbose=info sapphire755.dat - - INFO:applying pdfgetn3 defaults - INFO:set config.mode = neutron - INFO:searching for default config file /home/user/.pdfgetn3.cfg - INFO:searching for default config file .pdfgetn3.cfg - INFO:searching for default config file pdfgetn3.cfg - INFO:loaded default config file pdfgetn3.cfg - INFO:reset config.twothetazero = 0.0 - INFO:parsing config file section [DEFAULT] - INFO:set config.dataformat = twotheta - INFO:set config.backgroundfile = - INFO:set config.outputtypes = fq, gr - INFO:set config.mode = neutron - INFO:set config.wavelength = 1.0989 - INFO:set config.twothetazero = -0.38 - INFO:set config.composition = Al2O3 - INFO:set config.qmaxinst = 11.2 - INFO:set config.qmax = 11.2 - INFO:set config.rmin = 0.0 - INFO:set config.rmax = 20.0 - INFO:set config.rstep = 0.01 - INFO:finished parsing config file - INFO:processing command line options - INFO:set config.verbose = info - INFO:finished with command line options - INFO:using 1 input files from the command line. - INFO:configuring PDFGetter mode 'neutron' - INFO:calling config_neutron - INFO:started PDF processing. - INFO:processing 'sapphire755.dat' - INFO:resolved output file '' as 'sapphire755.fq' - INFO:written outpufile sapphire755.fq - INFO:resolved output file '' as 'sapphire755.gr' - INFO:written outpufile sapphire755.gr - INFO:elapsed time: 0.097 - -This will produce two files :file:`sapphire755.fq`, :file:`sapphire755.gr` -for the |FQ| and |Gr| functions. -To compare them with expected results use :: - - $ plotdata sapphire755-expected.fq sapphire755.fq - $ plotdata sapphire755-expected.gr sapphire755.gr - - -Fit twothetazero ------------------------------------------------------------------------- - -For a good quality PDF it is essential to use powder patterns with -accurate values of *Q*. Some instruments may produce spectra with -a slightly offset scattering angle |twotheta| which -causes inaccurate *Q* and a noticeably worse PDF. -In this example we fit a constant-wavelength neutron PDF from nickel -together with the :confval:`twothetazero` correction parameter for -diffractometer offset. -The procedure can be used to calibrate the zero correction from -a standard sample and then use it for subsequent PDF extractions. -The protocol can be also applied to fit zero correction in -a full-fledged PDF refinement in case -the zero offset may change for different samples. - -This tutorial requires either Linux or Mac OS X platforms, -because the PDF fitting is conducted with -`DiffPy-CMI `__, -which is not yet available for Windows. -If DiffPy-CMI is not yet installed, -we recommend to use `Anaconda Python`_ and set up a dedicated -Anaconda environment *nbcmi* for this tutorial. -This can be accomplished using the following steps:: - - $ conda create -n nbcmi -c diffpy python=3.13 diffpy-cmi - $ conda activate nbcmi - $ pip install path/to/diffpy.pdfgetx-VERSION.whl - -When these prerequisites are in place, -change to the :file:`n-twothetazero-fit` directory -and open the self documented Jupyter notebook as follows :: - - $ jupyter notebook fit-twothetazero.ipynb - -.. |tthzero| replace:: :confval:`!twothetazero` - -The notebook sets up and executes several PDF refinements and -compares the results from fits on uncorrected data and with -a fitted |tthzero|. -After running all cells the notebook should produce similar graphs -as in the figure below. - -.. figure:: images/twothetazerofit.png - - Refinement of nickel neutron PDF for **(a)** uncorrected data - and **(b)** with a refined zero correction. - The extracted PDFs are plotted as blue circles, - simulated PDFs as red lines and - the difference is plotted offset in green below. - -The final refined zero offset in the notebook should be approximately -0.36°. -The correction produces experimental PDF with a remarkably better fit -residual R\ :sub:`w` which is lowered from (a) 0.18 to (b) 0.05. - - -Small-angle-scattering PDF (sasPDF) ------------------------------------------------------------------------- - -Here we illustrate how to extract a PDF from small-angle-scattering (sas) data using :ref:`pdfgets3 `. -To do this, navigate to the :file:`Au_DNA_NPA` directory in your terminal. -In this folder, you will find :file:`Au_DNA_NPA.chi` and -:file:`Au_DNA_FF.chi` files which correspond to diffraction data from -DNA-capped Au nanoparticle assemblies and from a DNA-capped Au -nanoparticle colloidal solution respectively. Those two files were -measured at X21 beamline, NSLS and published in `D. Nykypanchuk, M. M. -Maye, D. van der Lelie, and O. Gang, Nature 451, 549 (2008). -`_. We thank Prof. Oleg Gang (Columbia University) for sharing this data. The :file:`pdfgets3.cfg` -configuration file specifies processing parameters such as :confval:`formfactorfile` (required by ``sas`` mode), :confval:`qmin`, :confval:`qmax`, and :confval:`mode`. - -To extract the PDF of DNA-capped DNA nanoparticle assemblies :: - - $ pdfgets3 --verbose=info Au_DNA_NPA.chi - - INFO:applying pdfgets3 defaults - INFO:set config.mode = sas - INFO:searching for default config file /home/user/.pdfgets3.cfg - INFO:searching for default config file .pdfgets3.cfg - INFO:searching for default config file pdfgets3.cfg - INFO:loaded default config file pdfgets3.cfg - INFO:reset config.twothetazero = 0.0 - INFO:parsing config file section [DEFAULT] - INFO:set config.dataformat = QA - INFO:set config.backgroundfile = - INFO:set config.datapath = [] - INFO:set config.formfactorfile = Au_DNA_FF.chi - INFO:set config.output = - INFO:set config.outputtypes = fq, gr - INFO:set config.force = yes - INFO:set config.mode = sas - INFO:set config.rpoly = 240.605 - INFO:set config.qmaxinst = 0.075 - INFO:set config.qmin = 0.01 - INFO:set config.qmax = 0.072 - INFO:set config.rmin = 100.0 - INFO:set config.rmax = 5000.0 - INFO:set config.rstep = 1.0 - INFO:set config.plot = iq, fq, gr - INFO:set config.verbose = info - INFO:finished parsing config file - INFO:processing command line options - INFO:set config.verbose = info - INFO:finished with command line options - INFO:using 1 input files from the command line. - INFO:configuring PDFGetter mode 'sas' - INFO:calling config_sas - INFO:started PDF processing. - INFO:processing 'Au_DNA_NPA.chi' - INFO:resolved output file '' as 'Au_DNA_NPA.fq' - INFO:written outpufile Au_DNA_NPA.fq - INFO:resolved output file '' as 'Au_DNA_NPA.gr' - INFO:written outpufile Au_DNA_NPA.gr - INFO:elapsed time: 0.947 - - -This will save two files :file:`Au_DNA_NPA.fq`, :file:`Au_DNA_NPA.gr` in the same directory for the |FQ| and |Gr| functions. This also plots |FQ| and |Gr| functions in a pop-up window and the processing parameters such as :confval:`rpoly` or so may be tuned interactively by issuing command :py:func:`!tuneconfig` in the `IPython`_ session as discussed above. - - -Multiple Background Subtraction ------------------------------------------------------------------------- - -Predefined configuration file -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - - -In this tutorial, we will show how to use the multiple-background subtraction -functionality by obtaining equivalent outputs from different, but equivalent, -subtractions. Change directory to the :file:`Multiple_Background_Subtraction` -directory. The file named -:file:`ni300mesh_300k_nor_1-5.chi` contains powder X-ray data measured from -nickel at the Advanced Photon Source beamline 6ID-D. The file contains two -columns for the |twotheta| scattering angles and X-ray intensities. Similarly, -:file:`kapton_bgrd_300k_nor_2-3.chi` contains the background data (i.e., the -intensities from an empty kapton capillary), and a duplicate file -:file:`kapton_bgrd_300k_nor_2-3_copy.chi` contains the same dataset (this -duplication of the data is necessary when using the same background multiple -times as the internal system only stores a set of unique background filenames). -The last :file:`.chi` file, :file:`TEST_blank-00000.chi`, simply stores a null -dataset and can be used to show the invariance of the PDF under permutation of -the order of background subtractions as well as the fact that more than just -two backgrounds can be subtracted. There are also two config files -:file:`nickel.cfg` and :file:`nickel_sub_two_half_backgrounds.cfg`, each of -which contain a set of complete configuration parameters for converting the Ni -powder pattern to a PDF for the case of doing so via a single background -subtraction and a multiple background subtraction, respectively. Finally, there -is a fully processed G(r) file :file:`ni300mesh_300k_nor_1-5-expected.gr` which -contains the expected output of producing the PDF of the Ni sample after -subtracting the kapton background. Since all processing parameters are already -defined in these configuration files, producing the PDF using multiple -background subtractions is very simple and involves running the :ref:`pdfgetx3 -` program and specifying the multiple background subtraction -config file and the powder data file as arguments:: - - $ pdfgetx3 -c nickel_sub_two_half_backgrounds.cfg ni300mesh_300k_nor_1-5.chi - -The resulting G(r) file, :file:`ni300mesh_300k_nor_1-5.gr`, is the result of -producing the PDF according to:: - - "ni300mesh_300k_nor_1-5.chi" - 0.5*"kapton_bgrd_300k_nor_2-3.chi" - - 0.5*"kapton_bgrd_300k_nor_2-3.chi" - -Which should be equivalent to the case where the following single background -subtraction had been performed:: - - "ni300mesh_300k_nor_1-5.chi" - 1.0*"kapton_bgrd_300k_nor_2-3.chi" - -The fact that both of these result in the same PDF can be verified by comparing -the produced G(r) with the expected G(r) provided in the example:: - - $ plotdata ni300mesh_300k_nor_1-5-expected.gr ni300mesh_300k_nor_1-5.gr - - -Interactive Multiple Background Subtraction -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -The multiple background subtraction functionality can also be carried out -interactively, as per the :ref:`my-tuneconfig` section, using the plural forms -of the relevant variables (i.e., `config.bgscales`, `config.backgroundfiles`, -etc.). diff --git a/static_root/doc/pdfgetx/2.4.0/_static/_sphinx_javascript_frameworks_compat.js b/static_root/doc/pdfgetx/2.4.0/_static/_sphinx_javascript_frameworks_compat.js deleted file mode 100644 index 81415803..00000000 --- a/static_root/doc/pdfgetx/2.4.0/_static/_sphinx_javascript_frameworks_compat.js +++ /dev/null @@ -1,123 +0,0 @@ -/* Compatability shim for jQuery and underscores.js. - * - * Copyright Sphinx contributors - * Released under the two clause BSD licence - */ - -/** - * small helper function to urldecode strings - * - * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/decodeURIComponent#Decoding_query_parameters_from_a_URL - */ -jQuery.urldecode = function(x) { - if (!x) { - return x - } - return decodeURIComponent(x.replace(/\+/g, ' ')); -}; - -/** - * small helper function to urlencode strings - */ -jQuery.urlencode = encodeURIComponent; - -/** - * This function returns the parsed url parameters of the - * current request. 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- }); - } - } - var addItems = []; - var result = this.each(function() { - highlight(this, addItems); - }); - for (var i = 0; i < addItems.length; ++i) { - jQuery(addItems[i].parent).before(addItems[i].target); - } - return result; -}; - -/* - * backward compatibility for jQuery.browser - * This will be supported until firefox bug is fixed. - */ -if (!jQuery.browser) { - jQuery.uaMatch = function(ua) { - ua = ua.toLowerCase(); - - var match = /(chrome)[ \/]([\w.]+)/.exec(ua) || - /(webkit)[ \/]([\w.]+)/.exec(ua) || - /(opera)(?:.*version|)[ \/]([\w.]+)/.exec(ua) || - /(msie) ([\w.]+)/.exec(ua) || - ua.indexOf("compatible") < 0 && /(mozilla)(?:.*? rv:([\w.]+)|)/.exec(ua) || - []; - - return { - browser: match[ 1 ] || "", - version: match[ 2 ] || "0" - }; - }; - jQuery.browser = {}; - jQuery.browser[jQuery.uaMatch(navigator.userAgent).browser] = true; -} diff --git a/static_root/doc/pdfgetx/2.4.0/_static/basic.css b/static_root/doc/pdfgetx/2.4.0/_static/basic.css deleted file mode 100644 index 4738b2ed..00000000 --- a/static_root/doc/pdfgetx/2.4.0/_static/basic.css +++ /dev/null @@ -1,906 +0,0 @@ -/* - * Sphinx stylesheet -- basic theme. - */ - -/* -- main layout ----------------------------------------------------------- */ - -div.clearer { - clear: both; -} - -div.section::after { - display: block; - content: ''; - clear: left; -} - -/* -- relbar ---------------------------------------------------------------- */ - -div.related { - width: 100%; - font-size: 90%; -} - -div.related h3 { - display: none; -} - -div.related ul { - margin: 0; - padding: 0 0 0 10px; - list-style: none; -} - -div.related li { - display: inline; -} - -div.related li.right { - float: right; - margin-right: 5px; -} - -/* -- sidebar --------------------------------------------------------------- */ - -div.sphinxsidebarwrapper { - padding: 10px 5px 0 10px; -} - -div.sphinxsidebar { - float: left; - width: 230px; - margin-left: -100%; - font-size: 90%; - word-wrap: break-word; - overflow-wrap : break-word; -} - -div.sphinxsidebar ul { - list-style: none; -} - -div.sphinxsidebar ul ul, -div.sphinxsidebar ul.want-points { - margin-left: 20px; - list-style: square; -} - -div.sphinxsidebar ul ul { - margin-top: 0; - margin-bottom: 0; -} - -div.sphinxsidebar form { - margin-top: 10px; -} - -div.sphinxsidebar input { - border: 1px solid #98dbcc; - font-family: sans-serif; - font-size: 1em; -} - -div.sphinxsidebar #searchbox form.search { - overflow: hidden; -} - -div.sphinxsidebar #searchbox input[type="text"] { - float: left; - width: 80%; - padding: 0.25em; - box-sizing: border-box; -} - -div.sphinxsidebar #searchbox input[type="submit"] { - float: left; - width: 20%; - border-left: none; - padding: 0.25em; - box-sizing: border-box; -} - - -img { - border: 0; - max-width: 100%; -} - -/* -- search page ----------------------------------------------------------- */ - -ul.search { - margin-top: 10px; -} - -ul.search li { - padding: 5px 0; -} - -ul.search li a { - font-weight: bold; -} - -ul.search li p.context { - color: #888; - margin: 2px 0 0 30px; - text-align: left; -} - -ul.keywordmatches li.goodmatch a { - font-weight: bold; -} - -/* -- index page ------------------------------------------------------------ */ - -table.contentstable { - width: 90%; - margin-left: auto; - margin-right: auto; -} - -table.contentstable p.biglink { - line-height: 150%; -} - -a.biglink { - font-size: 1.3em; -} - -span.linkdescr { - font-style: italic; - padding-top: 5px; - font-size: 90%; -} - -/* -- general index --------------------------------------------------------- */ - -table.indextable { - width: 100%; -} - -table.indextable td { - text-align: left; - vertical-align: top; -} - -table.indextable ul { - margin-top: 0; - margin-bottom: 0; - list-style-type: none; -} - -table.indextable > tbody > tr > td > ul { - padding-left: 0em; -} - -table.indextable tr.pcap { - height: 10px; -} - -table.indextable tr.cap { - margin-top: 10px; - background-color: #f2f2f2; -} - -img.toggler { - margin-right: 3px; - margin-top: 3px; - cursor: pointer; -} - -div.modindex-jumpbox { - border-top: 1px solid #ddd; - border-bottom: 1px solid #ddd; - margin: 1em 0 1em 0; - padding: 0.4em; -} - -div.genindex-jumpbox { - border-top: 1px solid #ddd; - border-bottom: 1px solid #ddd; - margin: 1em 0 1em 0; - padding: 0.4em; -} - -/* -- domain module index --------------------------------------------------- */ - -table.modindextable td { - padding: 2px; - border-collapse: collapse; -} - -/* -- general body styles --------------------------------------------------- */ - -div.body { - min-width: 360px; - max-width: 800px; -} - -div.body p, div.body dd, div.body li, div.body blockquote { - -moz-hyphens: auto; - -ms-hyphens: auto; - -webkit-hyphens: auto; - hyphens: auto; -} - -a.headerlink { - visibility: hidden; -} - -a:visited { - color: #551A8B; -} - -h1:hover > a.headerlink, -h2:hover > a.headerlink, -h3:hover > a.headerlink, -h4:hover > a.headerlink, -h5:hover > a.headerlink, -h6:hover > a.headerlink, -dt:hover > a.headerlink, -caption:hover > a.headerlink, -p.caption:hover > a.headerlink, -div.code-block-caption:hover > a.headerlink { - visibility: visible; -} - -div.body p.caption { - text-align: inherit; -} - -div.body td { - text-align: left; -} - -.first { - margin-top: 0 !important; -} - -p.rubric { - margin-top: 30px; - font-weight: bold; -} - -img.align-left, figure.align-left, .figure.align-left, object.align-left { - clear: left; - float: left; - margin-right: 1em; -} - -img.align-right, figure.align-right, .figure.align-right, object.align-right { - clear: right; - float: right; - margin-left: 1em; -} - -img.align-center, figure.align-center, .figure.align-center, object.align-center { - display: block; - margin-left: auto; - margin-right: auto; -} - -img.align-default, figure.align-default, .figure.align-default { - display: block; - margin-left: auto; - margin-right: auto; -} - -.align-left { - text-align: left; -} - -.align-center { - text-align: center; -} - -.align-default { - text-align: center; -} - -.align-right { - text-align: right; -} - -/* -- sidebars -------------------------------------------------------------- */ - -div.sidebar, -aside.sidebar { - margin: 0 0 0.5em 1em; - border: 1px solid #ddb; - padding: 7px; - background-color: #ffe; - width: 40%; - float: right; - clear: right; - overflow-x: auto; -} - -p.sidebar-title { - font-weight: bold; -} - -nav.contents, -aside.topic, -div.admonition, div.topic, blockquote { - clear: left; -} - -/* -- topics ---------------------------------------------------------------- */ - -nav.contents, -aside.topic, -div.topic { - border: 1px solid #ccc; - padding: 7px; - margin: 10px 0 10px 0; -} - -p.topic-title { - font-size: 1.1em; - font-weight: bold; - margin-top: 10px; -} - -/* -- admonitions ----------------------------------------------------------- */ - -div.admonition { - margin-top: 10px; - margin-bottom: 10px; - padding: 7px; -} - -div.admonition dt { - font-weight: bold; -} - -p.admonition-title { - margin: 0px 10px 5px 0px; - font-weight: bold; -} - -div.body p.centered { - text-align: center; - margin-top: 25px; -} - -/* -- content of sidebars/topics/admonitions -------------------------------- */ - -div.sidebar > :last-child, -aside.sidebar > :last-child, -nav.contents > :last-child, -aside.topic > :last-child, -div.topic > :last-child, -div.admonition > :last-child { - margin-bottom: 0; -} - -div.sidebar::after, -aside.sidebar::after, -nav.contents::after, -aside.topic::after, -div.topic::after, -div.admonition::after, -blockquote::after { - display: block; - content: ''; - clear: both; -} - -/* -- tables ---------------------------------------------------------------- */ - -table.docutils { - margin-top: 10px; - margin-bottom: 10px; - border: 0; - border-collapse: collapse; -} - -table.align-center { - margin-left: auto; - margin-right: auto; -} - -table.align-default { - margin-left: auto; - margin-right: auto; -} - -table caption span.caption-number { - font-style: italic; -} - -table caption span.caption-text { -} - -table.docutils td, table.docutils th { - padding: 1px 8px 1px 5px; - border-top: 0; - border-left: 0; - border-right: 0; - border-bottom: 1px solid #aaa; -} - -th { - text-align: left; - padding-right: 5px; -} - -table.citation { - border-left: solid 1px gray; - margin-left: 1px; -} - -table.citation td { - border-bottom: none; -} - -th > :first-child, -td > :first-child { - margin-top: 0px; -} - -th > :last-child, -td > :last-child { - margin-bottom: 0px; -} - -/* -- figures --------------------------------------------------------------- */ - -div.figure, figure { - margin: 0.5em; - padding: 0.5em; -} - -div.figure p.caption, figcaption { - padding: 0.3em; -} - -div.figure p.caption span.caption-number, -figcaption span.caption-number { - font-style: italic; -} - -div.figure p.caption span.caption-text, -figcaption span.caption-text { -} - -/* -- field list styles ----------------------------------------------------- */ - -table.field-list td, table.field-list th { - border: 0 !important; -} - -.field-list ul { - margin: 0; - padding-left: 1em; -} - -.field-list p { - margin: 0; -} - -.field-name { - -moz-hyphens: manual; - -ms-hyphens: manual; - -webkit-hyphens: manual; - hyphens: manual; -} - -/* -- hlist styles ---------------------------------------------------------- */ - -table.hlist { - margin: 1em 0; -} - -table.hlist td { - vertical-align: top; -} - -/* -- object description styles --------------------------------------------- */ - -.sig { - font-family: 'Consolas', 'Menlo', 'DejaVu Sans Mono', 'Bitstream Vera Sans Mono', monospace; -} - -.sig-name, code.descname { - background-color: transparent; - font-weight: bold; -} - -.sig-name { - font-size: 1.1em; -} - -code.descname { - font-size: 1.2em; -} - -.sig-prename, code.descclassname { - background-color: transparent; -} - -.optional { - font-size: 1.3em; -} - -.sig-paren { - font-size: larger; -} - -.sig-param.n { - font-style: italic; -} - -/* C++ specific styling */ - -.sig-inline.c-texpr, -.sig-inline.cpp-texpr { - font-family: unset; -} - -.sig.c .k, .sig.c .kt, -.sig.cpp .k, .sig.cpp .kt { - color: #0033B3; -} - -.sig.c .m, -.sig.cpp .m { - color: #1750EB; -} - -.sig.c .s, .sig.c .sc, -.sig.cpp .s, .sig.cpp .sc { - color: #067D17; -} - - -/* -- other body styles ----------------------------------------------------- */ - -ol.arabic { - list-style: decimal; -} - -ol.loweralpha { - list-style: lower-alpha; -} - -ol.upperalpha { - list-style: upper-alpha; -} - -ol.lowerroman { - list-style: lower-roman; -} - -ol.upperroman { - list-style: upper-roman; -} - -:not(li) > ol > li:first-child > :first-child, -:not(li) > ul > li:first-child > :first-child { - margin-top: 0px; -} - -:not(li) > ol > li:last-child > :last-child, -:not(li) > ul > li:last-child > :last-child { - margin-bottom: 0px; -} - -ol.simple ol p, -ol.simple ul p, -ul.simple ol p, -ul.simple ul p { - margin-top: 0; -} - -ol.simple > li:not(:first-child) > p, -ul.simple > li:not(:first-child) > p { - margin-top: 0; -} - -ol.simple p, -ul.simple p { - margin-bottom: 0; -} - -aside.footnote > span, -div.citation > span { - float: left; -} -aside.footnote > span:last-of-type, -div.citation > span:last-of-type { - padding-right: 0.5em; -} -aside.footnote > p { - margin-left: 2em; -} -div.citation > p { - margin-left: 4em; -} -aside.footnote > p:last-of-type, -div.citation > p:last-of-type { - margin-bottom: 0em; -} -aside.footnote > p:last-of-type:after, -div.citation > p:last-of-type:after { - content: ""; - clear: both; -} - -dl.field-list { - display: grid; - grid-template-columns: fit-content(30%) auto; -} - -dl.field-list > dt { - font-weight: bold; - word-break: break-word; - padding-left: 0.5em; - padding-right: 5px; -} - -dl.field-list > dd { - padding-left: 0.5em; - margin-top: 0em; - margin-left: 0em; - margin-bottom: 0em; -} - -dl { - margin-bottom: 15px; -} - -dd > :first-child { - margin-top: 0px; -} - -dd ul, dd table { - margin-bottom: 10px; -} - -dd { - margin-top: 3px; - margin-bottom: 10px; - margin-left: 30px; -} - -.sig dd { - margin-top: 0px; - margin-bottom: 0px; -} - -.sig dl { - margin-top: 0px; - margin-bottom: 0px; -} - -dl > dd:last-child, -dl > dd:last-child > :last-child { - margin-bottom: 0; -} - -dt:target, span.highlighted { - background-color: #fbe54e; -} - -rect.highlighted { - fill: #fbe54e; -} - -dl.glossary dt { - font-weight: bold; - font-size: 1.1em; -} - -.versionmodified { - font-style: italic; -} - -.system-message { - background-color: #fda; - padding: 5px; - border: 3px solid red; -} - -.footnote:target { - background-color: #ffa; -} - -.line-block { - display: block; - margin-top: 1em; - margin-bottom: 1em; -} - -.line-block .line-block { - margin-top: 0; - margin-bottom: 0; - margin-left: 1.5em; -} - -.guilabel, .menuselection { - font-family: sans-serif; -} - -.accelerator { - text-decoration: underline; -} - -.classifier { - font-style: oblique; -} - -.classifier:before { - font-style: normal; - margin: 0 0.5em; - content: ":"; - display: inline-block; -} - -abbr, acronym { - border-bottom: dotted 1px; - cursor: help; -} - -/* -- code displays --------------------------------------------------------- */ - -pre { - overflow: auto; - overflow-y: hidden; /* fixes display issues on Chrome browsers */ -} - -pre, div[class*="highlight-"] { - clear: both; -} - -span.pre { - -moz-hyphens: none; - -ms-hyphens: none; - -webkit-hyphens: none; - hyphens: none; - white-space: nowrap; -} - -div[class*="highlight-"] { - margin: 1em 0; -} - -td.linenos pre { - border: 0; - background-color: transparent; - color: #aaa; -} - -table.highlighttable { - display: block; -} - -table.highlighttable tbody { - display: block; -} - -table.highlighttable tr { - display: flex; -} - -table.highlighttable td { - margin: 0; - padding: 0; -} - -table.highlighttable td.linenos { - padding-right: 0.5em; -} - -table.highlighttable td.code { - flex: 1; - overflow: hidden; -} - -.highlight .hll { - display: block; -} - -div.highlight pre, -table.highlighttable pre { - margin: 0; -} - -div.code-block-caption + div { - margin-top: 0; -} - -div.code-block-caption { - margin-top: 1em; - padding: 2px 5px; - font-size: small; -} - -div.code-block-caption code { - background-color: transparent; -} - -table.highlighttable td.linenos, -span.linenos, -div.highlight span.gp { /* gp: Generic.Prompt */ - user-select: none; - -webkit-user-select: text; /* Safari fallback only */ - -webkit-user-select: none; /* Chrome/Safari */ - -moz-user-select: none; /* Firefox */ - -ms-user-select: none; /* IE10+ */ -} - -div.code-block-caption span.caption-number { - padding: 0.1em 0.3em; - font-style: italic; -} - -div.code-block-caption span.caption-text { -} - -div.literal-block-wrapper { - margin: 1em 0; -} - -code.xref, a code { - background-color: transparent; - font-weight: bold; -} - -h1 code, h2 code, h3 code, h4 code, h5 code, h6 code { - background-color: transparent; -} - -.viewcode-link { - float: right; -} - -.viewcode-back { - float: right; - font-family: sans-serif; -} - -div.viewcode-block:target { - margin: -1px -10px; - padding: 0 10px; -} - -/* -- math display ---------------------------------------------------------- */ - -img.math { - vertical-align: middle; -} - -div.body div.math p { - text-align: center; -} - -span.eqno { - float: right; -} - -span.eqno a.headerlink { - position: absolute; - z-index: 1; -} - -div.math:hover a.headerlink { - visibility: visible; -} - -/* -- printout stylesheet --------------------------------------------------- */ - -@media print { - div.document, - div.documentwrapper, - div.bodywrapper { - margin: 0 !important; - width: 100%; - } - - div.sphinxsidebar, - div.related, - div.footer, - #top-link { - display: none; - } -} \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.4.0/_static/check-solid.svg b/static_root/doc/pdfgetx/2.4.0/_static/check-solid.svg deleted file mode 100644 index 92fad4b5..00000000 --- a/static_root/doc/pdfgetx/2.4.0/_static/check-solid.svg +++ /dev/null @@ -1,4 +0,0 @@ - - - - diff --git a/static_root/doc/pdfgetx/2.4.0/_static/clipboard.min.js b/static_root/doc/pdfgetx/2.4.0/_static/clipboard.min.js deleted file mode 100644 index 54b3c463..00000000 --- a/static_root/doc/pdfgetx/2.4.0/_static/clipboard.min.js +++ /dev/null @@ -1,7 +0,0 @@ -/*! - * clipboard.js v2.0.8 - * https://clipboardjs.com/ - * - * Licensed MIT © Zeno Rocha - */ -!function(t,e){"object"==typeof exports&&"object"==typeof module?module.exports=e():"function"==typeof define&&define.amd?define([],e):"object"==typeof exports?exports.ClipboardJS=e():t.ClipboardJS=e()}(this,function(){return n={686:function(t,e,n){"use strict";n.d(e,{default:function(){return o}});var e=n(279),i=n.n(e),e=n(370),u=n.n(e),e=n(817),c=n.n(e);function a(t){try{return document.execCommand(t)}catch(t){return}}var f=function(t){t=c()(t);return a("cut"),t};var l=function(t){var e,n,o,r=1 - - - - diff --git a/static_root/doc/pdfgetx/2.4.0/_static/copybutton.css b/static_root/doc/pdfgetx/2.4.0/_static/copybutton.css deleted file mode 100644 index f1916ec7..00000000 --- a/static_root/doc/pdfgetx/2.4.0/_static/copybutton.css +++ /dev/null @@ -1,94 +0,0 @@ -/* Copy buttons */ -button.copybtn { - position: absolute; - display: flex; - top: .3em; - right: .3em; - width: 1.7em; - height: 1.7em; - opacity: 0; - transition: opacity 0.3s, border .3s, background-color .3s; - user-select: none; - padding: 0; - border: none; - outline: none; - border-radius: 0.4em; - /* The colors that GitHub uses */ - border: #1b1f2426 1px solid; - background-color: #f6f8fa; - color: #57606a; -} - -button.copybtn.success { - border-color: #22863a; - color: #22863a; -} - -button.copybtn svg { - stroke: currentColor; - width: 1.5em; - height: 1.5em; - padding: 0.1em; -} - -div.highlight { - position: relative; -} - -/* Show the copybutton */ -.highlight:hover button.copybtn, button.copybtn.success { - opacity: 1; -} - -.highlight button.copybtn:hover { - background-color: rgb(235, 235, 235); -} - -.highlight button.copybtn:active { - background-color: rgb(187, 187, 187); -} - -/** - * A minimal CSS-only tooltip copied from: - * https://codepen.io/mildrenben/pen/rVBrpK - * - * To use, write HTML like the following: - * - *

    Short

    - */ - .o-tooltip--left { - position: relative; - } - - .o-tooltip--left:after { - opacity: 0; - visibility: hidden; - position: absolute; - content: attr(data-tooltip); - padding: .2em; - font-size: .8em; - left: -.2em; - background: grey; - color: white; - white-space: nowrap; - z-index: 2; - border-radius: 2px; - transform: translateX(-102%) translateY(0); - transition: opacity 0.2s cubic-bezier(0.64, 0.09, 0.08, 1), transform 0.2s cubic-bezier(0.64, 0.09, 0.08, 1); -} - -.o-tooltip--left:hover:after { - display: block; - opacity: 1; - visibility: visible; - transform: translateX(-100%) translateY(0); - transition: opacity 0.2s cubic-bezier(0.64, 0.09, 0.08, 1), transform 0.2s cubic-bezier(0.64, 0.09, 0.08, 1); - transition-delay: .5s; -} - -/* By default the copy button shouldn't show up when printing a page */ -@media print { - button.copybtn { - display: none; - } -} diff --git a/static_root/doc/pdfgetx/2.4.0/_static/copybutton.js b/static_root/doc/pdfgetx/2.4.0/_static/copybutton.js deleted file mode 100644 index caa31c1e..00000000 --- a/static_root/doc/pdfgetx/2.4.0/_static/copybutton.js +++ /dev/null @@ -1,248 +0,0 @@ -// Localization support -const messages = { - 'en': { - 'copy': 'Copy', - 'copy_to_clipboard': 'Copy to clipboard', - 'copy_success': 'Copied!', - 'copy_failure': 'Failed to copy', - }, - 'es' : { - 'copy': 'Copiar', - 'copy_to_clipboard': 'Copiar al portapapeles', - 'copy_success': '¡Copiado!', - 'copy_failure': 'Error al copiar', - }, - 'de' : { - 'copy': 'Kopieren', - 'copy_to_clipboard': 'In die Zwischenablage kopieren', - 'copy_success': 'Kopiert!', - 'copy_failure': 'Fehler beim Kopieren', - }, - 'fr' : { - 'copy': 'Copier', - 'copy_to_clipboard': 'Copier dans le presse-papier', - 'copy_success': 'Copié !', - 'copy_failure': 'Échec de la copie', - }, - 'ru': { - 'copy': 'Скопировать', - 'copy_to_clipboard': 'Скопировать в буфер', - 'copy_success': 'Скопировано!', - 'copy_failure': 'Не удалось скопировать', - }, - 'zh-CN': { - 'copy': '复制', - 'copy_to_clipboard': '复制到剪贴板', - 'copy_success': '复制成功!', - 'copy_failure': '复制失败', - }, - 'it' : { - 'copy': 'Copiare', - 'copy_to_clipboard': 'Copiato negli appunti', - 'copy_success': 'Copiato!', - 'copy_failure': 'Errore durante la copia', - } -} - -let locale = 'en' -if( document.documentElement.lang !== undefined - && messages[document.documentElement.lang] !== undefined ) { - locale = document.documentElement.lang -} - -let doc_url_root = DOCUMENTATION_OPTIONS.URL_ROOT; -if (doc_url_root == '#') { - doc_url_root = ''; -} - -/** - * SVG files for our copy buttons - */ -let iconCheck = ` - ${messages[locale]['copy_success']} - - -` - -// If the user specified their own SVG use that, otherwise use the default -let iconCopy = ``; -if (!iconCopy) { - iconCopy = ` - ${messages[locale]['copy_to_clipboard']} - - - -` -} - -/** - * Set up copy/paste for code blocks - */ - -const runWhenDOMLoaded = cb => { - if (document.readyState != 'loading') { - cb() - } else if (document.addEventListener) { - document.addEventListener('DOMContentLoaded', cb) - } else { - document.attachEvent('onreadystatechange', function() { - if (document.readyState == 'complete') cb() - }) - } -} - -const codeCellId = index => `codecell${index}` - -// Clears selected text since ClipboardJS will select the text when copying -const clearSelection = () => { - if (window.getSelection) { - window.getSelection().removeAllRanges() - } else if (document.selection) { - document.selection.empty() - } -} - -// Changes tooltip text for a moment, then changes it back -// We want the timeout of our `success` class to be a bit shorter than the -// tooltip and icon change, so that we can hide the icon before changing back. -var timeoutIcon = 2000; -var timeoutSuccessClass = 1500; - -const temporarilyChangeTooltip = (el, oldText, newText) => { - el.setAttribute('data-tooltip', newText) - el.classList.add('success') - // Remove success a little bit sooner than we change the tooltip - // So that we can use CSS to hide the copybutton first - setTimeout(() => el.classList.remove('success'), timeoutSuccessClass) - setTimeout(() => el.setAttribute('data-tooltip', oldText), timeoutIcon) -} - -// Changes the copy button icon for two seconds, then changes it back -const temporarilyChangeIcon = (el) => { - el.innerHTML = iconCheck; - setTimeout(() => {el.innerHTML = iconCopy}, timeoutIcon) -} - -const addCopyButtonToCodeCells = () => { - // If ClipboardJS hasn't loaded, wait a bit and try again. This - // happens because we load ClipboardJS asynchronously. - if (window.ClipboardJS === undefined) { - setTimeout(addCopyButtonToCodeCells, 250) - return - } - - // Add copybuttons to all of our code cells - const COPYBUTTON_SELECTOR = 'div.highlight pre'; - const codeCells = document.querySelectorAll(COPYBUTTON_SELECTOR) - codeCells.forEach((codeCell, index) => { - const id = codeCellId(index) - codeCell.setAttribute('id', id) - - const clipboardButton = id => - `` - codeCell.insertAdjacentHTML('afterend', clipboardButton(id)) - }) - -function escapeRegExp(string) { - return string.replace(/[.*+?^${}()|[\]\\]/g, '\\$&'); // $& means the whole matched string -} - -/** - * Removes excluded text from a Node. - * - * @param {Node} target Node to filter. - * @param {string} exclude CSS selector of nodes to exclude. - * @returns {DOMString} Text from `target` with text removed. - */ -function filterText(target, exclude) { - const clone = target.cloneNode(true); // clone as to not modify the live DOM - if (exclude) { - // remove excluded nodes - clone.querySelectorAll(exclude).forEach(node => node.remove()); - } - return clone.innerText; -} - -// Callback when a copy button is clicked. Will be passed the node that was clicked -// should then grab the text and replace pieces of text that shouldn't be used in output -function formatCopyText(textContent, copybuttonPromptText, isRegexp = false, onlyCopyPromptLines = true, removePrompts = true, copyEmptyLines = true, lineContinuationChar = "", hereDocDelim = "") { - var regexp; - var match; - - // Do we check for line continuation characters and "HERE-documents"? - var useLineCont = !!lineContinuationChar - var useHereDoc = !!hereDocDelim - - // create regexp to capture prompt and remaining line - if (isRegexp) { - regexp = new RegExp('^(' + copybuttonPromptText + ')(.*)') - } else { - regexp = new RegExp('^(' + escapeRegExp(copybuttonPromptText) + ')(.*)') - } - - const outputLines = []; - var promptFound = false; - var gotLineCont = false; - var gotHereDoc = false; - const lineGotPrompt = []; - for (const line of textContent.split('\n')) { - match = line.match(regexp) - if (match || gotLineCont || gotHereDoc) { - promptFound = regexp.test(line) - lineGotPrompt.push(promptFound) - if (removePrompts && promptFound) { - outputLines.push(match[2]) - } else { - outputLines.push(line) - } - gotLineCont = line.endsWith(lineContinuationChar) & useLineCont - if (line.includes(hereDocDelim) & useHereDoc) - gotHereDoc = !gotHereDoc - } else if (!onlyCopyPromptLines) { - outputLines.push(line) - } else if (copyEmptyLines && line.trim() === '') { - outputLines.push(line) - } - } - - // If no lines with the prompt were found then just use original lines - if (lineGotPrompt.some(v => v === true)) { - textContent = outputLines.join('\n'); - } - - // Remove a trailing newline to avoid auto-running when pasting - if (textContent.endsWith("\n")) { - textContent = textContent.slice(0, -1) - } - return textContent -} - - -var copyTargetText = (trigger) => { - var target = document.querySelector(trigger.attributes['data-clipboard-target'].value); - - // get filtered text - let exclude = '.linenos'; - - let text = filterText(target, exclude); - return formatCopyText(text, '^\\$ ', true, true, true, true, '', '') -} - - // Initialize with a callback so we can modify the text before copy - const clipboard = new ClipboardJS('.copybtn', {text: copyTargetText}) - - // Update UI with error/success messages - clipboard.on('success', event => { - clearSelection() - temporarilyChangeTooltip(event.trigger, messages[locale]['copy'], messages[locale]['copy_success']) - temporarilyChangeIcon(event.trigger) - }) - - clipboard.on('error', event => { - temporarilyChangeTooltip(event.trigger, messages[locale]['copy'], messages[locale]['copy_failure']) - }) -} - -runWhenDOMLoaded(addCopyButtonToCodeCells) \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.4.0/_static/copybutton_funcs.js b/static_root/doc/pdfgetx/2.4.0/_static/copybutton_funcs.js deleted file mode 100644 index dbe1aaad..00000000 --- a/static_root/doc/pdfgetx/2.4.0/_static/copybutton_funcs.js +++ /dev/null @@ -1,73 +0,0 @@ -function escapeRegExp(string) { - return string.replace(/[.*+?^${}()|[\]\\]/g, '\\$&'); // $& means the whole matched string -} - -/** - * Removes excluded text from a Node. - * - * @param {Node} target Node to filter. - * @param {string} exclude CSS selector of nodes to exclude. - * @returns {DOMString} Text from `target` with text removed. - */ -export function filterText(target, exclude) { - const clone = target.cloneNode(true); // clone as to not modify the live DOM - if (exclude) { - // remove excluded nodes - clone.querySelectorAll(exclude).forEach(node => node.remove()); - } - return clone.innerText; -} - -// Callback when a copy button is clicked. Will be passed the node that was clicked -// should then grab the text and replace pieces of text that shouldn't be used in output -export function formatCopyText(textContent, copybuttonPromptText, isRegexp = false, onlyCopyPromptLines = true, removePrompts = true, copyEmptyLines = true, lineContinuationChar = "", hereDocDelim = "") { - var regexp; - var match; - - // Do we check for line continuation characters and "HERE-documents"? - var useLineCont = !!lineContinuationChar - var useHereDoc = !!hereDocDelim - - // create regexp to capture prompt and remaining line - if (isRegexp) { - regexp = new RegExp('^(' + copybuttonPromptText + ')(.*)') - } else { - regexp = new RegExp('^(' + escapeRegExp(copybuttonPromptText) + ')(.*)') - } - - const outputLines = []; - var promptFound = false; - var gotLineCont = false; - var gotHereDoc = false; - const lineGotPrompt = []; - for (const line of textContent.split('\n')) { - match = line.match(regexp) - if (match || gotLineCont || gotHereDoc) { - promptFound = regexp.test(line) - lineGotPrompt.push(promptFound) - if (removePrompts && promptFound) { - outputLines.push(match[2]) - } else { - outputLines.push(line) - } - gotLineCont = line.endsWith(lineContinuationChar) & useLineCont - if (line.includes(hereDocDelim) & useHereDoc) - gotHereDoc = !gotHereDoc - } else if (!onlyCopyPromptLines) { - outputLines.push(line) - } else if (copyEmptyLines && line.trim() === '') { - outputLines.push(line) - } - } - - // If no lines with the prompt were found then just use original lines - if (lineGotPrompt.some(v => v === true)) { - textContent = outputLines.join('\n'); - } - - // Remove a trailing newline to avoid auto-running when pasting - if (textContent.endsWith("\n")) { - textContent = textContent.slice(0, -1) - } - return textContent -} diff --git a/static_root/doc/pdfgetx/2.4.0/_static/css/badge_only.css b/static_root/doc/pdfgetx/2.4.0/_static/css/badge_only.css deleted file mode 100644 index 88ba55b9..00000000 --- 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- -/** - * Simple result scoring code. - */ -if (typeof Scorer === "undefined") { - var Scorer = { - // Implement the following function to further tweak the score for each result - // The function takes a result array [docname, title, anchor, descr, score, filename] - // and returns the new score. - /* - score: result => { - const [docname, title, anchor, descr, score, filename, kind] = result - return score - }, - */ - - // query matches the full name of an object - objNameMatch: 11, - // or matches in the last dotted part of the object name - objPartialMatch: 6, - // Additive scores depending on the priority of the object - objPrio: { - 0: 15, // used to be importantResults - 1: 5, // used to be objectResults - 2: -5, // used to be unimportantResults - }, - // Used when the priority is not in the mapping. - objPrioDefault: 0, - - // query found in title - title: 15, - partialTitle: 7, - // query found in terms - term: 5, - partialTerm: 2, - }; -} - -// Global search result kind enum, used by themes to style search results. -class SearchResultKind { - static get index() { return "index"; } - static get object() { return "object"; } - static get text() { return "text"; } - static get title() { return "title"; } -} - -const _removeChildren = (element) => { - while (element && element.lastChild) element.removeChild(element.lastChild); -}; - -/** - * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Guide/Regular_Expressions#escaping - */ -const _escapeRegExp = (string) => - string.replace(/[.*+\-?^${}()|[\]\\]/g, "\\$&"); // $& means the whole matched string - -const _displayItem = (item, searchTerms, highlightTerms) => { - const docBuilder = DOCUMENTATION_OPTIONS.BUILDER; - const docFileSuffix = DOCUMENTATION_OPTIONS.FILE_SUFFIX; - const docLinkSuffix = DOCUMENTATION_OPTIONS.LINK_SUFFIX; - const showSearchSummary = DOCUMENTATION_OPTIONS.SHOW_SEARCH_SUMMARY; - const contentRoot = document.documentElement.dataset.content_root; - - const [docName, title, anchor, descr, score, _filename, kind] = item; - - let listItem = document.createElement("li"); - // Add a class representing the item's type: - // can be used by a theme's CSS selector for styling - // See SearchResultKind for the class names. - listItem.classList.add(`kind-${kind}`); - let requestUrl; - let linkUrl; - if (docBuilder === "dirhtml") { - // dirhtml builder - let dirname = docName + "/"; - if (dirname.match(/\/index\/$/)) - dirname = dirname.substring(0, dirname.length - 6); - else if (dirname === "index/") dirname = ""; - requestUrl = contentRoot + dirname; - linkUrl = requestUrl; - } else { - // normal html builders - requestUrl = contentRoot + docName + docFileSuffix; - linkUrl = docName + docLinkSuffix; - } - let linkEl = listItem.appendChild(document.createElement("a")); - linkEl.href = linkUrl + anchor; - linkEl.dataset.score = score; - linkEl.innerHTML = title; - if (descr) { - listItem.appendChild(document.createElement("span")).innerHTML = - " (" + descr + ")"; - // highlight search terms in the description - if (SPHINX_HIGHLIGHT_ENABLED) // set in sphinx_highlight.js - highlightTerms.forEach((term) => _highlightText(listItem, term, "highlighted")); - } - else if (showSearchSummary) - fetch(requestUrl) - .then((responseData) => responseData.text()) - .then((data) => { - if (data) - listItem.appendChild( - Search.makeSearchSummary(data, searchTerms, anchor) - ); - // highlight search terms in the summary - if (SPHINX_HIGHLIGHT_ENABLED) // set in sphinx_highlight.js - highlightTerms.forEach((term) => _highlightText(listItem, term, "highlighted")); - }); - Search.output.appendChild(listItem); -}; -const _finishSearch = (resultCount) => { - Search.stopPulse(); - Search.title.innerText = _("Search Results"); - if (!resultCount) - Search.status.innerText = Documentation.gettext( - "Your search did not match any documents. Please make sure that all words are spelled correctly and that you've selected enough categories." - ); - else - Search.status.innerText = Documentation.ngettext( - "Search finished, found one page matching the search query.", - "Search finished, found ${resultCount} pages matching the search query.", - resultCount, - ).replace('${resultCount}', resultCount); -}; -const _displayNextItem = ( - results, - resultCount, - searchTerms, - highlightTerms, -) => { - // results left, load the summary and display it - // this is intended to be dynamic (don't sub resultsCount) - if (results.length) { - _displayItem(results.pop(), searchTerms, highlightTerms); - setTimeout( - () => _displayNextItem(results, resultCount, searchTerms, highlightTerms), - 5 - ); - } - // search finished, update title and status message - else _finishSearch(resultCount); -}; -// Helper function used by query() to order search results. -// Each input is an array of [docname, title, anchor, descr, score, filename, kind]. -// Order the results by score (in opposite order of appearance, since the -// `_displayNextItem` function uses pop() to retrieve items) and then alphabetically. -const _orderResultsByScoreThenName = (a, b) => { - const leftScore = a[4]; - const rightScore = b[4]; - if (leftScore === rightScore) { - // same score: sort alphabetically - const leftTitle = a[1].toLowerCase(); - const rightTitle = b[1].toLowerCase(); - if (leftTitle === rightTitle) return 0; - return leftTitle > rightTitle ? -1 : 1; // inverted is intentional - } - return leftScore > rightScore ? 1 : -1; -}; - -/** - * Default splitQuery function. Can be overridden in ``sphinx.search`` with a - * custom function per language. - * - * The regular expression works by splitting the string on consecutive characters - * that are not Unicode letters, numbers, underscores, or emoji characters. - * This is the same as ``\W+`` in Python, preserving the surrogate pair area. - */ -if (typeof splitQuery === "undefined") { - var splitQuery = (query) => query - .split(/[^\p{Letter}\p{Number}_\p{Emoji_Presentation}]+/gu) - .filter(term => term) // remove remaining empty strings -} - -/** - * Search Module - */ -const Search = { - _index: null, - _queued_query: null, - _pulse_status: -1, - - htmlToText: (htmlString, anchor) => { - const htmlElement = new DOMParser().parseFromString(htmlString, 'text/html'); - for (const removalQuery of [".headerlink", "script", "style"]) { - htmlElement.querySelectorAll(removalQuery).forEach((el) => { el.remove() }); - } - if (anchor) { - const anchorContent = htmlElement.querySelector(`[role="main"] ${anchor}`); - if (anchorContent) return anchorContent.textContent; - - console.warn( - `Anchored content block not found. Sphinx search tries to obtain it via DOM query '[role=main] ${anchor}'. Check your theme or template.` - ); - } - - // if anchor not specified or not found, fall back to main content - const docContent = htmlElement.querySelector('[role="main"]'); - if (docContent) return docContent.textContent; - - console.warn( - "Content block not found. Sphinx search tries to obtain it via DOM query '[role=main]'. Check your theme or template." - ); - return ""; - }, - - init: () => { - const query = new URLSearchParams(window.location.search).get("q"); - document - .querySelectorAll('input[name="q"]') - .forEach((el) => (el.value = query)); - if (query) Search.performSearch(query); - }, - - loadIndex: (url) => - (document.body.appendChild(document.createElement("script")).src = url), - - setIndex: (index) => { - Search._index = index; - if (Search._queued_query !== null) { - const query = Search._queued_query; - Search._queued_query = null; - Search.query(query); - } - }, - - hasIndex: () => Search._index !== null, - - deferQuery: (query) => (Search._queued_query = query), - - stopPulse: () => (Search._pulse_status = -1), - - startPulse: () => { - if (Search._pulse_status >= 0) return; - - const pulse = () => { - Search._pulse_status = (Search._pulse_status + 1) % 4; - Search.dots.innerText = ".".repeat(Search._pulse_status); - if (Search._pulse_status >= 0) window.setTimeout(pulse, 500); - }; - pulse(); - }, - - /** - * perform a search for something (or wait until index is loaded) - */ - performSearch: (query) => { - // create the required interface elements - const searchText = document.createElement("h2"); - searchText.textContent = _("Searching"); - const searchSummary = document.createElement("p"); - searchSummary.classList.add("search-summary"); - searchSummary.innerText = ""; - const searchList = document.createElement("ul"); - searchList.setAttribute("role", "list"); - searchList.classList.add("search"); - - const out = document.getElementById("search-results"); - Search.title = out.appendChild(searchText); - Search.dots = Search.title.appendChild(document.createElement("span")); - Search.status = out.appendChild(searchSummary); - Search.output = out.appendChild(searchList); - - const searchProgress = document.getElementById("search-progress"); - // Some themes don't use the search progress node - if (searchProgress) { - searchProgress.innerText = _("Preparing search..."); - } - Search.startPulse(); - - // index already loaded, the browser was quick! - if (Search.hasIndex()) Search.query(query); - else Search.deferQuery(query); - }, - - _parseQuery: (query) => { - // stem the search terms and add them to the correct list - const stemmer = new Stemmer(); - const searchTerms = new Set(); - const excludedTerms = new Set(); - const highlightTerms = new Set(); - const objectTerms = new Set(splitQuery(query.toLowerCase().trim())); - splitQuery(query.trim()).forEach((queryTerm) => { - const queryTermLower = queryTerm.toLowerCase(); - - // maybe skip this "word" - // stopwords array is from language_data.js - if ( - stopwords.indexOf(queryTermLower) !== -1 || - queryTerm.match(/^\d+$/) - ) - return; - - // stem the word - let word = stemmer.stemWord(queryTermLower); - // select the correct list - if (word[0] === "-") excludedTerms.add(word.substr(1)); - else { - searchTerms.add(word); - highlightTerms.add(queryTermLower); - } - }); - - if (SPHINX_HIGHLIGHT_ENABLED) { // set in sphinx_highlight.js - localStorage.setItem("sphinx_highlight_terms", [...highlightTerms].join(" ")) - } - - // console.debug("SEARCH: searching for:"); - // console.info("required: ", [...searchTerms]); - // console.info("excluded: ", [...excludedTerms]); - - return [query, searchTerms, excludedTerms, highlightTerms, objectTerms]; - }, - - /** - * execute search (requires search index to be loaded) - */ - _performSearch: (query, searchTerms, excludedTerms, highlightTerms, objectTerms) => { - const filenames = Search._index.filenames; - const docNames = Search._index.docnames; - const titles = Search._index.titles; - const allTitles = Search._index.alltitles; - const indexEntries = Search._index.indexentries; - - // Collect multiple result groups to be sorted separately and then ordered. - // Each is an array of [docname, title, anchor, descr, score, filename, kind]. - const normalResults = []; - const nonMainIndexResults = []; - - _removeChildren(document.getElementById("search-progress")); - - const queryLower = query.toLowerCase().trim(); - for (const [title, foundTitles] of Object.entries(allTitles)) { - if (title.toLowerCase().trim().includes(queryLower) && (queryLower.length >= title.length/2)) { - for (const [file, id] of foundTitles) { - const score = Math.round(Scorer.title * queryLower.length / title.length); - const boost = titles[file] === title ? 1 : 0; // add a boost for document titles - normalResults.push([ - docNames[file], - titles[file] !== title ? `${titles[file]} > ${title}` : title, - id !== null ? "#" + id : "", - null, - score + boost, - filenames[file], - SearchResultKind.title, - ]); - } - } - } - - // search for explicit entries in index directives - for (const [entry, foundEntries] of Object.entries(indexEntries)) { - if (entry.includes(queryLower) && (queryLower.length >= entry.length/2)) { - for (const [file, id, isMain] of foundEntries) { - const score = Math.round(100 * queryLower.length / entry.length); - const result = [ - docNames[file], - titles[file], - id ? "#" + id : "", - null, - score, - filenames[file], - SearchResultKind.index, - ]; - if (isMain) { - normalResults.push(result); - } else { - nonMainIndexResults.push(result); - } - } - } - } - - // lookup as object - objectTerms.forEach((term) => - normalResults.push(...Search.performObjectSearch(term, objectTerms)) - ); - - // lookup as search terms in fulltext - normalResults.push(...Search.performTermsSearch(searchTerms, excludedTerms)); - - // let the scorer override scores with a custom scoring function - if (Scorer.score) { - normalResults.forEach((item) => (item[4] = Scorer.score(item))); - nonMainIndexResults.forEach((item) => (item[4] = Scorer.score(item))); - } - - // Sort each group of results by score and then alphabetically by name. - normalResults.sort(_orderResultsByScoreThenName); - nonMainIndexResults.sort(_orderResultsByScoreThenName); - - // Combine the result groups in (reverse) order. - // Non-main index entries are typically arbitrary cross-references, - // so display them after other results. - let results = [...nonMainIndexResults, ...normalResults]; - - // remove duplicate search results - // note the reversing of results, so that in the case of duplicates, the highest-scoring entry is kept - let seen = new Set(); - results = results.reverse().reduce((acc, result) => { - let resultStr = result.slice(0, 4).concat([result[5]]).map(v => String(v)).join(','); - if (!seen.has(resultStr)) { - acc.push(result); - seen.add(resultStr); - } - return acc; - }, []); - - return results.reverse(); - }, - - query: (query) => { - const [searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms] = Search._parseQuery(query); - const results = Search._performSearch(searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms); - - // for debugging - //Search.lastresults = results.slice(); // a copy - // console.info("search results:", Search.lastresults); - - // print the results - _displayNextItem(results, results.length, searchTerms, highlightTerms); - }, - - /** - * search for object names - */ - performObjectSearch: (object, objectTerms) => { - const filenames = Search._index.filenames; - const docNames = Search._index.docnames; - const objects = Search._index.objects; - const objNames = Search._index.objnames; - const titles = Search._index.titles; - - const results = []; - - const objectSearchCallback = (prefix, match) => { - const name = match[4] - const fullname = (prefix ? prefix + "." : "") + name; - const fullnameLower = fullname.toLowerCase(); - if (fullnameLower.indexOf(object) < 0) return; - - let score = 0; - const parts = fullnameLower.split("."); - - // check for different match types: exact matches of full name or - // "last name" (i.e. last dotted part) - if (fullnameLower === object || parts.slice(-1)[0] === object) - score += Scorer.objNameMatch; - else if (parts.slice(-1)[0].indexOf(object) > -1) - score += Scorer.objPartialMatch; // matches in last name - - const objName = objNames[match[1]][2]; - const title = titles[match[0]]; - - // If more than one term searched for, we require other words to be - // found in the name/title/description - const otherTerms = new Set(objectTerms); - otherTerms.delete(object); - if (otherTerms.size > 0) { - const haystack = `${prefix} ${name} ${objName} ${title}`.toLowerCase(); - if ( - [...otherTerms].some((otherTerm) => haystack.indexOf(otherTerm) < 0) - ) - return; - } - - let anchor = match[3]; - if (anchor === "") anchor = fullname; - else if (anchor === "-") anchor = objNames[match[1]][1] + "-" + fullname; - - const descr = objName + _(", in ") + title; - - // add custom score for some objects according to scorer - if (Scorer.objPrio.hasOwnProperty(match[2])) - score += Scorer.objPrio[match[2]]; - else score += Scorer.objPrioDefault; - - results.push([ - docNames[match[0]], - fullname, - "#" + anchor, - descr, - score, - filenames[match[0]], - SearchResultKind.object, - ]); - }; - Object.keys(objects).forEach((prefix) => - objects[prefix].forEach((array) => - objectSearchCallback(prefix, array) - ) - ); - return results; - }, - - /** - * search for full-text terms in the index - */ - performTermsSearch: (searchTerms, excludedTerms) => { - // prepare search - const terms = Search._index.terms; - const titleTerms = Search._index.titleterms; - const filenames = Search._index.filenames; - const docNames = Search._index.docnames; - const titles = Search._index.titles; - - const scoreMap = new Map(); - const fileMap = new Map(); - - // perform the search on the required terms - searchTerms.forEach((word) => { - const files = []; - // find documents, if any, containing the query word in their text/title term indices - // use Object.hasOwnProperty to avoid mismatching against prototype properties - const arr = [ - { files: terms.hasOwnProperty(word) ? terms[word] : undefined, score: Scorer.term }, - { files: titleTerms.hasOwnProperty(word) ? titleTerms[word] : undefined, score: Scorer.title }, - ]; - // add support for partial matches - if (word.length > 2) { - const escapedWord = _escapeRegExp(word); - if (!terms.hasOwnProperty(word)) { - Object.keys(terms).forEach((term) => { - if (term.match(escapedWord)) - arr.push({ files: terms[term], score: Scorer.partialTerm }); - }); - } - if (!titleTerms.hasOwnProperty(word)) { - Object.keys(titleTerms).forEach((term) => { - if (term.match(escapedWord)) - arr.push({ files: titleTerms[term], score: Scorer.partialTitle }); - }); - } - } - - // no match but word was a required one - if (arr.every((record) => record.files === undefined)) return; - - // found search word in contents - arr.forEach((record) => { - if (record.files === undefined) return; - - let recordFiles = record.files; - if (recordFiles.length === undefined) recordFiles = [recordFiles]; - files.push(...recordFiles); - - // set score for the word in each file - recordFiles.forEach((file) => { - if (!scoreMap.has(file)) scoreMap.set(file, new Map()); - const fileScores = scoreMap.get(file); - fileScores.set(word, record.score); - }); - }); - - // create the mapping - files.forEach((file) => { - if (!fileMap.has(file)) fileMap.set(file, [word]); - else if (fileMap.get(file).indexOf(word) === -1) fileMap.get(file).push(word); - }); - }); - - // now check if the files don't contain excluded terms - const results = []; - for (const [file, wordList] of fileMap) { - // check if all requirements are matched - - // as search terms with length < 3 are discarded - const filteredTermCount = [...searchTerms].filter( - (term) => term.length > 2 - ).length; - if ( - wordList.length !== searchTerms.size && - wordList.length !== filteredTermCount - ) - continue; - - // ensure that none of the excluded terms is in the search result - if ( - [...excludedTerms].some( - (term) => - terms[term] === file || - titleTerms[term] === file || - (terms[term] || []).includes(file) || - (titleTerms[term] || []).includes(file) - ) - ) - break; - - // select one (max) score for the file. - const score = Math.max(...wordList.map((w) => scoreMap.get(file).get(w))); - // add result to the result list - results.push([ - docNames[file], - titles[file], - "", - null, - score, - filenames[file], - SearchResultKind.text, - ]); - } - return results; - }, - - /** - * helper function to return a node containing the - * search summary for a given text. keywords is a list - * of stemmed words. - */ - makeSearchSummary: (htmlText, keywords, anchor) => { - const text = Search.htmlToText(htmlText, anchor); - if (text === "") return null; - - const textLower = text.toLowerCase(); - const actualStartPosition = [...keywords] - .map((k) => textLower.indexOf(k.toLowerCase())) - .filter((i) => i > -1) - .slice(-1)[0]; - const startWithContext = Math.max(actualStartPosition - 120, 0); - - const top = startWithContext === 0 ? "" : "..."; - const tail = startWithContext + 240 < text.length ? "..." : ""; - - let summary = document.createElement("p"); - summary.classList.add("context"); - summary.textContent = top + text.substr(startWithContext, 240).trim() + tail; - - return summary; - }, -}; - -_ready(Search.init); diff --git a/static_root/doc/pdfgetx/2.4.0/_static/sphinx_highlight.js b/static_root/doc/pdfgetx/2.4.0/_static/sphinx_highlight.js deleted file mode 100644 index 8a96c69a..00000000 --- a/static_root/doc/pdfgetx/2.4.0/_static/sphinx_highlight.js +++ /dev/null @@ -1,154 +0,0 @@ -/* Highlighting utilities for Sphinx HTML documentation. */ -"use strict"; - -const SPHINX_HIGHLIGHT_ENABLED = true - -/** - * highlight a given string on a node by wrapping it in - * span elements with the given class name. - */ -const _highlight = (node, addItems, text, className) => { - if (node.nodeType === Node.TEXT_NODE) { - const val = node.nodeValue; - const parent = node.parentNode; - const pos = val.toLowerCase().indexOf(text); - if ( - pos >= 0 && - !parent.classList.contains(className) && - !parent.classList.contains("nohighlight") - ) { - let span; - - const closestNode = parent.closest("body, svg, foreignObject"); - const isInSVG = closestNode && closestNode.matches("svg"); - if (isInSVG) { - span = document.createElementNS("http://www.w3.org/2000/svg", "tspan"); - } else { - span = document.createElement("span"); - span.classList.add(className); - } - - span.appendChild(document.createTextNode(val.substr(pos, text.length))); - const rest = document.createTextNode(val.substr(pos + text.length)); - parent.insertBefore( - span, - parent.insertBefore( - rest, - node.nextSibling - ) - ); - node.nodeValue = val.substr(0, pos); - /* There may be more occurrences of search term in this node. So call this - * function recursively on the remaining fragment. - */ - _highlight(rest, addItems, text, className); - - if (isInSVG) { - const rect = document.createElementNS( - "http://www.w3.org/2000/svg", - "rect" - ); - const bbox = parent.getBBox(); - rect.x.baseVal.value = bbox.x; - rect.y.baseVal.value = bbox.y; - rect.width.baseVal.value = bbox.width; - rect.height.baseVal.value = bbox.height; - rect.setAttribute("class", className); - addItems.push({ parent: parent, target: rect }); - } - } - } else if (node.matches && !node.matches("button, select, textarea")) { - node.childNodes.forEach((el) => _highlight(el, addItems, text, className)); - } -}; -const _highlightText = (thisNode, text, className) => { - let addItems = []; - _highlight(thisNode, addItems, text, className); - addItems.forEach((obj) => - obj.parent.insertAdjacentElement("beforebegin", obj.target) - ); -}; - -/** - * Small JavaScript module for the documentation. - */ -const SphinxHighlight = { - - /** - * highlight the search words provided in localstorage in the text - */ - highlightSearchWords: () => { - if (!SPHINX_HIGHLIGHT_ENABLED) return; // bail if no highlight - - // get and clear terms from localstorage - const url = new URL(window.location); - const highlight = - localStorage.getItem("sphinx_highlight_terms") - || url.searchParams.get("highlight") - || ""; - localStorage.removeItem("sphinx_highlight_terms") - url.searchParams.delete("highlight"); - window.history.replaceState({}, "", url); - - // get individual terms from highlight string - const terms = highlight.toLowerCase().split(/\s+/).filter(x => x); - if (terms.length === 0) return; // nothing to do - - // There should never be more than one element matching "div.body" - const divBody = document.querySelectorAll("div.body"); - const body = divBody.length ? divBody[0] : document.querySelector("body"); - window.setTimeout(() => { - terms.forEach((term) => _highlightText(body, term, "highlighted")); - }, 10); - - const searchBox = document.getElementById("searchbox"); - if (searchBox === null) return; - searchBox.appendChild( - document - .createRange() - .createContextualFragment( - '

    ' + - '' + - _("Hide Search Matches") + - "

    " - ) - ); - }, - - /** - * helper function to hide the search marks again - */ - hideSearchWords: () => { - document - .querySelectorAll("#searchbox .highlight-link") - .forEach((el) => el.remove()); - document - .querySelectorAll("span.highlighted") - .forEach((el) => el.classList.remove("highlighted")); - localStorage.removeItem("sphinx_highlight_terms") - }, - - initEscapeListener: () => { - // only install a listener if it is really needed - if (!DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS) return; - - document.addEventListener("keydown", (event) => { - // bail for input elements - if (BLACKLISTED_KEY_CONTROL_ELEMENTS.has(document.activeElement.tagName)) return; - // bail with special keys - if (event.shiftKey || event.altKey || event.ctrlKey || event.metaKey) return; - if (DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS && (event.key === "Escape")) { - SphinxHighlight.hideSearchWords(); - event.preventDefault(); - } - }); - }, -}; - -_ready(() => { - /* Do not call highlightSearchWords() when we are on the search page. - * It will highlight words from the *previous* search query. - */ - if (typeof Search === "undefined") SphinxHighlight.highlightSearchWords(); - SphinxHighlight.initEscapeListener(); -}); diff --git a/static_root/doc/pdfgetx/2.4.0/files.html b/static_root/doc/pdfgetx/2.4.0/files.html deleted file mode 100644 index c4b85ffd..00000000 --- a/static_root/doc/pdfgetx/2.4.0/files.html +++ /dev/null @@ -1,206 +0,0 @@ - - - - - - - - - Files used in PDF extraction — diffpy.pdfgetx No version found. The correct version will appear in the released version. documentation - - - - - - - - - - - - - - - - - - - - -
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    Files used in PDF extraction

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    Configuration file

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    Configuration files may define the PDF processing parameters. -By default, the pdfgetx3 program attempts to read -.pdfgetx3.cfg file from the user HOME directory, -then .pdfgetx3.cfg and pdfgetx3.cfg files -from the current working directory. -If configuration file has a different name, it needs to be specified -with the -c, --config option. -The pdfgetn3 program works in the same way, -except it checks for configuration files -~/.pdfgetn3.cfg, .pdfgetn3.cfg and pdfgetn3.cfg.

    -

    The easiest way of creating a configuration file is to generate -a template content using the --createconfig option as

    -
    pdfgetx3 --createconfig=test.cfg
-
    -
    -

    and then change the generated test.cfg file in your favorite text -editor. The configuration file follows a simple “varname=value” syntax, -any lines starting with “#” are ignored as comments.

    -

    The configuration file has several sections marked as [SECTIONNAME]. -The [DEFAULT] section is mandatory and it contains the default -global settings. Any other sections are optional and they are applied -only when selected with the -s, --section option on the -command line. Thus

    -
    pdfgetx3 --config=test.cfg --section=nacl
-
    -
    -

    would read the parameters from the [nacl] section after reading the -defaults. Having several sections in the configuration -file is useful when there are multiple measurements that share most of -the parameters, but differ in a few of them, for example in chemical -composition. The configuration file can then contain sections per each -sample that define only the composition, while all other parameters are -specified just once in the global DEFAULT section.

    -
    -
    -

    Input files

    -

    PDFgetX3 and PDFgetN3 accept input powder diffraction data -in the form of two-column text file, -where the first column x is either the scattering angle -2Θ in degrees, momentum transfer Q in inverse nanometers or Q -in inverse ångströms. The second column y contains the corresponding -scattered intensities normalized per unit solid angle. The actual type -of the x-values is identified by the dataformat parameter. -The input files may contain header with comments or metadata, and the -actual data are read from the first long section of numerical values.

    -

    The input files are usually passed as command-line arguments to -pdfgetx3 or pdfgetn3 programs and must be paths -accessible from the current working directory.

    -

    Input files can be also defined by setting the inputfile -value in the configuration file. The -d, --datapath -option can be then used to provide additional data directories to -search for these inputs and for the backgroundfile. -This is to support configuration files located in a different -directory than the data.

    -

    When the --find option is active, the pdfgetx3 arguments -are understood as filename patterns and the input files are found -in the current or specified directory.

    -
    -
    -

    Output files

    -

    PDFgetX3 and PDFgetN3 can produce up to four different output data files:

    -
      -

    • .iq – I(Q), the background-corrected -intensities sampled on a regular Q-space grid in inverse ångströms,

      • -

    • .sq – S(Q), the total scattering structure function, -with intensities normalized by average scattering factors and -corrected by a polynomial fit,

      • -

    • .fq – F(Q), the reduced structure function equal to Q(S(Q) - 1),

      • -

    • .gr – G(r), the resultant PDF, where the first column is the -separation r in ångströms and the second is the function G in -Å-2.

      • -
    -

    You can specify what output files should be produced by setting the -outputtypes parameter in the configuration file or by -passing the -t, --outputtypes on the command line.

    -

    The header of all output files contains the parameter values that were -used in the calculation and thus it is by itself a valid configuration -file. When passed as an argument to the --config option, -the PDFgetX3 will reproduce the previous calculation.

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    Index

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    - Symbols - | A - | B - | C - | D - | E - | F - | G - | I - | L - | M - | O - | P - | Q - | R - | S - | T - | V - | W - -
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    © Copyright 2025, The Trustees of Columbia University in the City of New York.

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    - - Built with Sphinx using a - theme - provided by Read the Docs. - - -
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    diffpy.pdfgetx

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    User manual for PDFgetX3, PDFgetN3, PDFgetS3 and Python package diffpy.pdfgetx.

    -
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    Release No version found. The correct version will appear in the released version.
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    December 15, 2025
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    Table of contents

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    Indices

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    © Copyright 2025, The Trustees of Columbia University in the City of New York.

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    - - Built with Sphinx using a - theme - provided by Read the Docs. - - -
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    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.4.0/install.html b/static_root/doc/pdfgetx/2.4.0/install.html deleted file mode 100644 index 4055c1bb..00000000 --- a/static_root/doc/pdfgetx/2.4.0/install.html +++ /dev/null @@ -1,256 +0,0 @@ - - - - - - - - - Installation — diffpy.pdfgetx No version found. The correct version will appear in the released version. documentation - - - - - - - - - - - - - - - - - - - - -
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    Installation

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    Software requirements

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    This software is written in Python programming language, therefore -you must have Python 3.13, 3.12, or 3.11 installed. In addition, -the following third-party Python libraries are also required:

    -
      -

    • pip - Python package installer

      • -

    • setuptools - tools for installing Python packages

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    • NumPy - library for scientific computing with Python

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    • matplotlib - Python plotting library

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    • IPython - enhanced interactive Python shell

      • -
    -

    Standard Python releases can be obtained from -https://www.python.org/downloads. -The third-party libraries can be found at the -Python Package Index -or using any Internet search engine.

    -

    Another more convenient option is to obtain one of the science-oriented -Python distributions such as -Anaconda Python, -Enthought Canopy or -PythonXY, -These distributions already include all the necessary libraries, so the -required Python software can be all installed in one step.

    -

    On Linux operating systems the third-party libraries are usually -included in a system software repository. For example on an -Ubuntu Linux computer the software dependencies can be all installed -with a single shell command

    -
    sudo apt-get install \
-  python3-pip python3-setuptools \
-  python3-numpy python3-matplotlib ipython3
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    -
    -

    This may be, of course, as well accomplished using the GUI -driven Synaptic package manager. Other Linux -distributions may use different software management tools, -but the names of the necessary packages should be very similar -to those above.

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    On Windows operating system, it may be necessary to add the -C:\Python37 directory and the scripts directory -C:\Python37\Scripts to the system PATH. Some Python -distributions already do so as a part of their installation process. The -easiest way to check is to start the Command Prompt, type -there python and see if this starts the Python interpreter.

    -

    Alternately, if you want to run the diffpy.pdfgetx software with a specific version of Python, -we recommend using a virtual environment, such as conda. For example, if you have Anaconda Python installed, -you can create a conda virtual environment to install the software as follow

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    conda create --name pdfgetx_env python=3.13 numpy matplotlib ipython
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    -
    -

    You can choose the name of the environment and python version as you desire. You can choose any of the -supported Python versions. Then, activate this environment and follow the instructions in the -next section to install the software

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    conda activate pdfgetx_env
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    Installation

    -

    The diffpy.pdfgetx software is distributed as a Python wheel file, -which can be obtained from the -Columbia Technology Ventures. -Once all the required software is in -place, start the command prompt on Windows or a Unix terminal on Linux -or Mac, navigate to the directory that contains the wheel file and -execute the following command:

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    pip install ./diffpy.pdfgetx-VERSION.whl
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    -
    -

    Here VERSION needs to be replaced to match the actual filename. It is -critical that pip installer is from a supported Python version otherwise -the program would not work. On Linux and Mac operating systems the installation may need to run with root user privileges, for example, by prepending sudo to the command line above. If root access is not available, use the pip install options --user or --prefix to install the software to a user-writable directory.

    -

    The package provides three programs for PDF conversion, pdfgetx3, pdfgetn3 and pdfgets3. To check if they are correctly installed run

    -
    pdfgetx3 --version
-pdfgetn3 --version
-pdfgets3 --version
-
    -
    -

    This should display the software version, which should agree -with the VERSION string in the wheel package name. -The installation also includes a plotdata -command for an easy plotting of text data files. To verify -if plotdata works, run the plotdata --version command. -Finally, a comprehensive test of the installed software can -be executed using

    -
    python -m diffpy.pdfgetx.tests.run
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    -
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    Note

    -

    Older versions of diffpy.pdfgetx use Python egg format -instead of Python wheel. -To install these use the easy_install command as follows:

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    python -m easy_install ./diffpy.pdfgetx-VERSION.egg
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    -
    -
    -
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    -

    IPython magic command

    -

    These instructions are intended for IPython users who would like to -integrate PDFgetX3, PDFgetN3 and PDFgetS3 into their IPython environment. If -you don’t plan to customize IPython in such way you can safely skip -this paragraph.

    -

    When pdfgetx3 or pdfgetn3 or pdfgets3 is run in interactive mode, it start -IPython interactive shell and define an extra %pdfgetx3, %pdfgetn3 and %pdfgets3 magic commands within the IPython session. The IPython -magic commands are not valid Python code, but work in a similar -fashion as standard shell commands. The %pdfgetx3, %pdfgetn3 and %pdfgets3 magics can be thus used with the same options and arguments as if run from the shell. This is useful for processing more files, while -preserving all plots or variables that were already created -in an IPython session.

    -

    The %pdfgetx3, %pdfgetn3 and %pdfgets3 magic commands can be defined -permanently so they are available in all IPython sessions. To set -this up

    -
      -

    1. find the profile_default/ipython_config.py file and open it -in a text editor. If that file does not exists, -create it first by executing

      -
      ipython profile create
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      -
      -
      2. -

    2. navigate to the paragraph that contains the -c.InteractiveShellApp.extensions and add there -the following line

      -
      c.InteractiveShellApp.extensions = ['diffpy.pdfgetx.ipy_magics']
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      There must be no leading indent, i.e., the text must start at the -very first column.

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    Interactive mode

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    The interactive mode is activated by using either the --i, --interact option or a non-empty ---plot option. In the interactive mode -the program starts an IPython interactive shell and pre-loads several -functions and variables related to the PDF calculation. It also defines -IPython commands %pdfgetx3 and %pdfgetn3, which can be used with -the same syntax as the pdfgetx3 and pdfgetn3 in -system shell. -The interactive session is also initialized with all functions from the -matplotlib.pyplot module for convenient plotting. -The functions and variables related to PDF processing are:

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    -_interactive_.pdfgetter(x=None, y=None, filename='', **kwargs)
    -

    Instance of the PDFGetter class which serves as a -low-level function that calculates the PDF. This is a callable -object, which takes as an argument a pair of input arrays for -(Q, intensity) or (2Θ, intensity) depending on -dataformat. It can be also called with a keyword -argument filename=FILE, which would read the input arrays -from the specified file. When called with no arguments, -it calculates PDF from the last input data.

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    Parameters:
    -
      -

    • x (numpy.ndarray, optional) – -The Q or 2Θ values in powder diffraction pattern.

      • -

    • y (numpy.ndarray, optional) – -The scattered intensities in powder diffraction pattern

      • -

    • filename (str, optional) – -The text data file for loading the x, y values when -they are not specified.

      • -

    • kwargs (misc, optional) – -Extra keyword arguments that are applied to -the config object, for example qmax=20.

      • -
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    Returns:
    -

    A pair of output arrays (r, G).

    -
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    -config
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    Instance of the PDFConfig class that stores the -parameters and input files for the program. -Use print(config) to display the current configuration values. -This is the same object as pdfgetter.config. Configuration -may be changed by setting a respective attribute of the -config object, for example:

    -
    In [1]: config.qmax = 21
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    -
    -

    The config values may be also changed by calling the -pdfgetter() or processfiles() function with a -corresponding keyword argument, for example -processfiles(qmax=20, force="once").

    -
    - -
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    -iraw
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    -iq
    -
    -sq
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    -fq
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    These variables are assigned the input raw intensities and the -intermediate results, stored as matrix rows. The matrix rows -correspond to twotheta1, intensity1, twotheta2, intensity2, etc. -Because matrices are iterated row first, the raw intensities -from all input files can be plotted with the matplotlib plot -function as plot(*iraw).

    -

    These variables should be considered read-only and are reset -with subsequent PDF calculations.

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    -
    -_interactive_.tuneconfig(plotids=None, pdfgetter=None, axeslist=None)
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    Show a GUI dialog for interactive tuning of configuration variables.

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    -
    Parameters:
    -
      -

    • plotids – The string or iterable that specify what interactive plots should be -tuned. By default the same as config.plot. It can be also an -integer index or name of a transformation in pdfgetter() or -a reference to a Transformation object.

      • -

    • pdfgetter – The optional PDFGetter object to be tuned. -This is by default the interactive pdfgetter() object.

      • -

    • axeslist – An optional list of matplotlib Axes for showing interactive plots. -When None, use subplot(N, 1, i) to create any necessary axes.

      • -
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    Note

    -

    Changes from tuneconfig() apply only to the configuration -and results in memory. Use the processfiles() function -to save them to disk.

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    See also

    -

    Interactive tuning of parameters tutorial

    -
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    -_interactive_.processfiles(filename=None, **kwargs)
    -

    Process all input files again with the current configuration values. -This is a higher-level function than pdfgetter(), as -it also saves output files and produces plots as specified by the -config object.

    -
    -
    Parameters:
    -
      -

    • filename – One or more input files to be converted to PDFs and saved or -plotted according to the config settings. Use the -previous list of input files when not specified.

      • -

    • kwargs – An optional keyword arguments to set for the config -object, for example (force="once", qmax=18).

      • -
    -
    -
    -

    This function updates the config.inputfiles -list and the iraw, iq, -sq, fq and gr -interactive variables.

    -
    - -
    -
    -_interactive_.clearsession()
    -

    Clear all elements from the config.inputfiles -and also the -iraw, iq, sq, -fq and gr variables.

    -
    -
    Returns:
    -

    No return value.

    -
    -
    -
    - -
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    -diffpy.pdfgetx.loaddata(filename, minrows=10, usecols=None, **kwargs)[source]
    -

    Find and load data from a text file.

    -

    The data reading starts at the first matrix block of at least minrows rows -and constant number of columns. This seems to work for most of the -datafiles including those generated by PDFGetX2.

    -
    -
    Parameters:
    -
      -

    • filename (str) – Name of the file to load the text data from.

      • -

    • minrows (int, optional) – Minimum number of rows in the first data block, by default 10. -All rows must have the same number of floating point values.

      • -

    • usecols (int, str, slice, iterable, optional) – Indices or names of the columns to be loaded from the data block, -the default is all columns. Data blocks that do not contain -sufficient number of columns are skipped. When usecols contain -string items, they are translated to column indices by looking -up a header line preceding the data block. String items formatted -as i:j:k are converted to slice objects. When usecols type -is string it is split to a list of names at comma and whitespace -characters.

      • -

    • unpack (bool, optional) – Return data as a sequence of columns that allows tuple unpacking -such as x, y = loaddata(FILENAME, unpack=True). Note that -transposing the loaded array as loaddata(FILENAME).T has -the same effect. The default is False.

      • -

    • kwargs (misc, optional) – Extra keyword arguments that are passed to numpy.loadtxt.

      • -
    -
    -
    Returns:
    -

    data – The data block loaded from the text file.

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    Return type:
    -

    numpy.ndarray

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    See also

    -

    numpy.loadtxt

    -
    -

    This function can be imported from the -diffpy.pdfgetx module.

    -
    - -
    -
    -diffpy.pdfgetx.plotdata.plotdata(filenames, style=None, x=None, y=None, log=None, ax=None, **kwargs)[source]
    -

    Plot one or more text data files.

    -

    The files are searched for data blocks which have enough columns -to satisfy both x and y selectors of the plotted data. This -may result in an empty plot when file has none wide-enough data -block (e.g., when y=100).

    -
    -
    Parameters:
    -
      -

    • filenames (str or an iterable of string file names) – One or more text data files to be plotted.

      • -

    • style (str) – Optional style argument for the matplotlib plot() function.

      • -

    • x (int, str, or iterable, optional) – The column to be used for the x data. This can be a zero-based -index of the desired column or a column name from data header. -A special symbol “.” can be used for a sequential data index. -When not specified, use the first column.

      • -

    • y (int, str, iterable, or slice, optional) – One or more columns to be used for the y data. This can be -a single zero-based index of the desired column or an iterable -of several indices. The y value can be also a string which -is split at commas and converted to integers, column names -or slice objects, e.g. “0,sine,4:7”. The slice instances -are applied to the entire data block from each loaded file. -Use the second column when not specified.

      • -

    • log ({'x', 'y'}, optional) – Set logarithmic scaling for the specified axis and linear scaling -for all others. For example, log="y" applies linear scaling -to the x-axis and logarithmic to the y-axis. Keep the current -axis scaling when not specified.

      • -

    • ax (matplotlib.axes.Axes, optional) – The axes to plot to. The plotting will be performed using the -ax.plot method. The default is pyplot.gca().

      • -

    • kwargs (misc, optional) – Keyword arguments for the matplotlib plot() function.

      • -
    -
    -
    Returns:
    -

    lines – The matplotlib Line2D objects added to the current axis.

    -
    -
    Return type:
    -

    list

    -
    -
    -
    -

    See also

    -

    diffpy.pdfgetx.loaddata

    -
    -

    This function can be imported from the -diffpy.pdfgetx.plotdata module.

    -
    - -
    -
    -diffpy.pdfgetx.findfiles(patterns=(), path='.', dotfiles=False)[source]
    -

    Find files that match all specified patterns.

    -

    Pattern syntax:

    -
      -

    • ^start - match “start” only at the beginning of the string.

      • -

    • end$ - match “end” only at the end of string.

      • -

    • <7> - match number 7 preceded by any number of leading zeros.

      • -

    • <1-34> - match an integer range from 1 to 34 inclusive.

      • -

    • <7-> - match an integer greater or equal 7.

      • -

    • <-> - match any integer.

      • -

    • + - start a new group of patterns to match more files.

      • -

    • dir/ - set search path effective from the current pattern group.

      • -
    -

    All integer ranges <N-M> above allow one or more leading zeros. -The range syntax does not support matching of negative numbers.

    -
    -
    Parameters:
    -
      -

    • patterns (iterable of strings or str, optional) – String patterns that must all match in returned filenames. -Can be also a single string with patterns separated by -whitespace characters. When empty match all files in the -current directory or in the path. A single + starts -a new pattern group for additional matches. Each pattern -group may have one entry containing /, for example, -dir/ or ./, which sets the search directory for -this and subsequent pattern groups. When pattern group -contains only the path entry it reuses file patterns from -the previous group.

      • -

    • path (str, optional) – Directory to be searched for the files. The default is “.” -to search the current directory.

      • -

    • dotfiles (bool, optional) – When True search also the hidden “.” starting files. These -files are by default ignored, but can be explicitly selected -by adding the ^. pattern.

      • -
    -
    -
    Returns:
    -

    filenames – The list of matching filenames. Return all files when -patterns are not specified.

    -
    -
    Return type:
    -

    list

    -
    -
    -

    This function can be imported from the -diffpy.pdfgetx module.

    -
    - -
    - - -
    -
    - -
    -
    -
    -
    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.4.0/intro.html b/static_root/doc/pdfgetx/2.4.0/intro.html deleted file mode 100644 index c01b9e31..00000000 --- a/static_root/doc/pdfgetx/2.4.0/intro.html +++ /dev/null @@ -1,187 +0,0 @@ - - - - - - - - - Introduction — diffpy.pdfgetx No version found. The correct version will appear in the released version. documentation - - - - - - - - - - - - - - - - - - - - -
    - - -
    - -
    -
    -
    - -
    -
    -
    -
    - -
    -

    Introduction

    -

    diffpy.pdfgetx is a simple yet powerful software for converting X-ray or -neutron powder diffraction data to atomic Pair Distribution Functions -(PDFs). In addition, it also allows the extraction of PDFs from small-angle -scattering (SAS) data. The software includes three command line programs -PDFgetX3, PDFgetN3 and PDFgetS3 for processing X-ray, -constant-wavelength neutron and small-angle diffraction data -respectively. PDFgetX3, PDFgetN3 and PDFgetS3 can be used in a batch -mode to convert a series of data files without user intervention. The -programs can be also run in an interactive mode that allows to control -process parameters and plot the PDFs and any intermediate results. Users -can interactively tune the PDF processing parameters, visualize their effect on the results and adjust them to their optimum values. The programs are bundled with Python library diffpy.pdfgetx for PDF processing functions, which can be used in custom Python scripts.

    -
    -

    License notice

    -

    Use of this software is subject to and permitted only under a separate, -written Use License granted by Columbia University. If you or your employer -is not a party to such an agreement, then your use of this software is -prohibited. If you don’t know whether or not your anticipated use is under -a license, you must contact Prof. Simon Billinge at sb2896@columbia.edu. -Use of this software without a license is prohibited.

    -

    Copyright 2009-2025, Trustees of Columbia University in the City of New York.

    -

    For more information please email Prof. Simon Billinge at sb2896@columbia.edu

    -
    -
    -

    Authors

    -

    This code was written by members of the Billinge Group at -Columbia University and Brookhaven National Laboratory including -Pavol Juhás, -Timur Davis, -Chia-Hao (Timothy) Liu, -Christopher Wright, -Christopher Farrow, -Connor J. Bracy, -Hung Vuong, -Songsheng Tao, -Simon Billinge.

    -
    -
    -

    References

    -

    If you use this program for a scientific research that leads -to publication, we ask that you acknowledge use of the program -by citing the following paper in your publication:

    -
    -

    P. Juhás and T. Davis, C. L. Farrow, S. J. L. Billinge -PDFgetX3: A rapid and highly automatable program for processing -powder diffraction data into total scattering pair distribution -functions, -J. Appl. Crystallogr. 46, 560-566 (2013)

    -
    -

    For research publications that use this software to process neutron -diffraction data we ask you to also cite:

    -
    -

    P. Juhás, J. N. Louwen, L. van Eijck, E. T. C. Vogt, -S. J. L. Billinge -PDFgetN3: atomic pair distribution functions from neutron -powder diffraction data using ad hoc corrections, -J. Appl. Crystallogr. 51 (2018)

    -
    -

    For research publications utilising the sasPDF utility, PDFGetS3, we ask you to acknowledge the use of the program by citing following paper in your publication:

    -
    -

    CH Liu, E. Janke, R. Li, P. Juhás, O. Gang, D. V. Talapin, S. J. L. Billinge -sasPDF: pair distribution function analysis of nanoparticle assemblies from small-angle-scattering data.

    -
    -
    -
    - - -
    -
    - -
    -
    -
    -
    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.4.0/objects.inv b/static_root/doc/pdfgetx/2.4.0/objects.inv deleted file mode 100644 index 59592dd5..00000000 Binary files a/static_root/doc/pdfgetx/2.4.0/objects.inv and /dev/null differ diff --git a/static_root/doc/pdfgetx/2.4.0/options.html b/static_root/doc/pdfgetx/2.4.0/options.html deleted file mode 100644 index 1610e2a6..00000000 --- a/static_root/doc/pdfgetx/2.4.0/options.html +++ /dev/null @@ -1,710 +0,0 @@ - - - - - - - - - Options and parameters — diffpy.pdfgetx No version found. The correct version will appear in the released version. documentation - - - - - - - - - - - - - - - - - - - - -
    - - -
    - -
    -
    -
    - -
    -
    -
    -
    - -
    -

    Options and parameters

    -

    PDFgetX3, PDFgetN3 and PDFgetS3 are very flexible in allowing users to customize -the actions of the program. They have a number of parameters that can -be specified either in configuration file or as command line options. -Here is a complete description of the parameters and options used by -either program.

    -
    -

    Note

    -

    The command line options start with a leading “-” and can -be only used as command line arguments when starting the -pdfgetx3 program. Within configuration file the parameter -names are plain words without any leading dashes. Finally, -parameters can be also set in the interactive mode as attributes of -the config object, but the assignments must be valid -Python statements. Here are examples of setting composition of -a processed specimen using each of these forms:

    -
      -

    1. assigned in configuration file:

      -
      ...
-composition = CaTiO3
-...
-
      -
      -
      2. -

    2. set as a command-line option when starting pdfgetx3 or -pdfgetn3:

      -
      pdfgetx3 --composition=CaTiO3
-
      -
      -
      3. -

    3. set in the IPython interactive mode:

      -
      pdfgetx3 -i
-...
-In [1]: config.composition = "CaTiO3"
-
      -
      -
      4. -
    -
    -
    -

    Program operation

    -
    -
    --h, --help
    -

    Display a brief usage information with a list of command line options -and exit.

    -
    - -
    -
    --V, --version
    -

    Display the program version and exit.

    -
    - -
    -
    ---manual
    -

    Open this manual in a Web browser and exit.

    -
    - -
    -
    --f, --find
    -
    - -
    -

    Select input files that match all patterns. The command -line arguments are by default taken as input files. However, -with the --find option they are processed as -file patterns and the matching files are then used as inputs. -The input files are by default searched in the current directory -unless there is a path entry (e.g., data/) that -selects a different search path. The search patterns are -interpreted as fixed strings, all of which must be present -in the file name. A single argument + starts -a new group of patterns to match more files that are not -covered by one set of patterns. Additional pattern -groups reuse the current search path unless they provide -their own path value. Pattern groups containing only -a path entry reuse file patterns from the last group. -When pattern groups overlap the repeated matches are ignored -to make the resulting list of files unique. Files starting -with . are ignored unless there is ^. pattern -that explicitly matches them. The search -syntax provides the following special patterns:

    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

    ^

    match at the beginning of the string, i.e., ^start -matches only filenames that start with “start”.

    $

    match at the end of string, for example, .chi$ selects -file names ending with “.chi”. A $ on its own -matches every string and can be used to select all files.

    <N>

    match number N preceded by any number of leading zeros, -e.g., <7> would match in “f7.chi”, “f007.chi”, but not -in “f77.chi”.

    <N-M>

    match an integer range from N to M inclusive. -The matched number may have one or more leading zeros.

    <7->

    match number 7 or larger.

    <-7>

    match number 7 or smaller.

    <->

    match any integer number.

    +

    start a new pattern group, for example, .chi$ + .dat$

    /

    set search path. An argument containing the / symbol -is taken as the search path, for example, data/ or -./. Each pattern group may provide its own search -path effective for that and any subsequent pattern group.

    -

    The ^$<> characters are often special to Unix or Windows -command shells, therefore they need to be enclosed in double -quotes (\”) when used on command line.

    -
    -

    See also

    -

    tutorial on matching input files

    -
    -
    -
    -
    --l, --list
    -

    List all input files and exit. This is useful with the ---find option to verify if input files -are matched as intended.

    -
    - -
    -
    -

    Configuration file options

    -
    -
    --c CONFIG, --config=CONFIG
    -

    Read custom configuration file after loading the default ones. -Do not load any configuration file when “NONE”.

    -
    - -
    -
    --s NAME, --section=NAME
    -

    Load the custom configuration file section [SectionName] after -loading the [DEFAULT] section. This is useful for creating -several configuration variants in a single configuration file.

    -
    - -
    -
    ---createconfig=FILE
    -

    Write template configuration to a new FILE and exit. Write -to the standard output when FILE is “-“.

    -
    - -

    See also the configuration file section -for further details.

    -
    -
    -

    Input and output options

    -
    -
    -inputfile
    -

    This parameter allows to specify one or more input files in the -configuration file, one file per line. The inputfile -is only used if no input files were provided on the -pdfgetx3 or pdfgetn3 command line.

    -
    - -
    -
    -dataformat
    -
    - -
    -
    ---format=FORMAT
    -

    Format of input files. Available formats are: twotheta, QA, -Qnm corresponding to a two-column text data where the first -column is either the scattering angle 2Θ in degrees, Q in -inverse ångströms or Q in inverse nanometers.

    -
    - -
    -
    -backgroundfile
    -
    - -
    -
    --b FILE, --background=FILE
    -

    Optional datafile with background intensities from an empty sample -holder. It must be in the same dataformat as other input files.

    -
    - -
    -

    Note

    -

    The following input is only used in sas mode.

    -
    -
    -
    -formfactorfile
    -
    - -
    -
    --ff FILE, --formfactorfile=FILE
    -

    Form factor intensities of the scatterers. This is required for sas mode. The form factor file is expected to be in two-column format with (Q, f2avg) data or three-column format with (Q, f2avg, favg2) data. The unit of Q is required to be A^-1.

    -
    - -
    -
    -datapath
    -
    - -
    -
    --d DATAPATH, --datapath=DATAPATH
    -

    One or more extra directories to be searched for input or -background data files. The -d option can be specified -several times to add more directories, these are prepended in front -of any default value. Within configuration file the datapath -directories have to be listed each on a separate line.

    -

    A special value “NONE” (or “none”) clears any previously defined -paths and only the further paths, if any, would be searched for -inputs.

    -
    - -
    -
    -output
    -
    - -
    -
    --o OUTPUT, --output=OUTPUT
    -

    Output file name, write to the standard output when “-”. The --t, --outputtypes option controls what results are -being saved. Normally the OUTPUT is used as a custom basename for -the output files. The OUTPUT may contain @f, @h, @r, @e, @t, @b, @o -tokens, which are expanded as follows:

    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

    token

    example

    definition

    @h

    dir1/dir2

    the input file directory or “.”

    @r

    dir1/dir2/filename

    the input path with extension removed

    @e

    dat

    the input file extension without “.”

    @t

    filename.dat

    the tail component of the input file

    @b

    filename

    the tail component with extension removed

    @o

    gr

    the output extension iq, sq, fq or gr

    -

    An empty value works the same as “@b.@o” and saves the data -in the current directory with a proper extension for the -saved results. When “@o” is not present in the OUTPUT, it is -appended as a default filename extension.

    -
    - -
    -
    -outputtypes
    -
    - -
    -
    --t TYPES, --outputtypes=TYPES
    -

    Result types to be saved, one or more comma separated values. -Supported values are “iq”, “sq”, “fq”, “gr”, corresponding to the -I(Q), S(Q), F(Q) and G(r) curves; these are also used as output -file extensions.

    -

    Result files are not written when empty, “none” or “NONE”.

    -
    - -
    -
    -force
    -
    - -
    -
    ---force=FORCE
    -

    Overwrite existing output files. By default the output -files are not written if they already exist. Possible values -in a configuration file are “true”, “yes”, “on”, “1” or -“false”, “no”, “off”, “0” or “once”. The special value “once” -permits one overwrite and then resets config.force to -False. Note that in interactive mode the values assigned -to config.force are converted to Python bool -unless equal to “once”.

    -
    - -
    -
    -

    PDF parameters

    -
    -
    -mode
    -
    - -
    -
    ---mode=STRING
    -

    The PDF conversion mode, i.e., the name of the -pdfgetter() setup. The available modes correspond -to the radiation type used in powder diffraction experiment and can -be “xray” or “neutron”.

    -
    - -
    -
    -wavelength
    -
    - -
    -
    --w FLOAT, --wavelength=FLOAT
    -

    X-ray wavelength in ångströms. This value is required -for the “twotheta” dataformat in order to convert the scattering -angles 2Θ to a momentum transfer Q. For other data formats -the wavelength is not necessary and may be left undefined.

    -
    - -
    -
    -twothetazero
    -
    - -
    -
    ---twothetazero=FLOAT
    -

    Position of the zero scattering angle in diffractometer degrees. -This parameter corrects for a constant offset in the -measured 2Θ values. When loading configuration file -it is assumed 0 unless specified otherwise. This parameter -is only effective for the “twotheta” dataformat.

    -
    - -
    -
    -composition
    -
    - -
    -
    ---composition=STRING
    -

    Chemical composition of the sample. Supported formats are -“PbTi0.5Zr0.5O3”, “Pb 1 Ti 1/2 Zr 1/2 O 3” or “CH3 (CH2)3 OH”. -Space characters are ignored, unit counts can be omitted, but it is -important to use a proper upper and lower case in atom symbols. -Elements can appear several times in the formula, e.g., “CH3 CH3”, -and the formula may contain parentheses or fractional -stoichiometries.

    -
    - -
    -
    -bgscale
    -
    - -
    -
    ---bgscale=FLOAT
    -

    Scaling of the background intensities loaded from the -backgroundfile, by default 1.

    -
    - -
    -
    -rpoly
    -
    - -
    -
    ---rpoly=FLOAT
    -

    r-limit for the maximum frequency in the F(Q) correction polynomial. -The PDF is unreliable at shorter r, however a -very small rpoly would disable polynomial correction and -give noisy PDF. -Larger values produce closer fits with a higher degree polynomial, -but when too large, they might smooth-out a useful signal in the -data. The default is 0.9.

    -
    - -
    -
    -qmaxinst
    -
    - -
    -
    ---qmaxinst
    -

    The Q cutoff for the meaningful input intensities in inverse -ångströms. Some data files may contain trailing zeros -or unreliable intensities at the upper bound of the detector range. -The qmaxinst defines a threshold for unreliable data. -The parameter is also used as an upper boundary for the polynomial -fit correction of the S(Q) data.

    -
    - -
    -
    -qmin
    -
    - -
    -
    ---qmin
    -

    The lower Q-limit for the Fourier transformation of the F(Q) curve -in inverse ångströms.

    -
    - -
    -
    -qmax
    -
    - -
    -
    ---qmax
    -

    The upper Q-limit for the Fourier transformation of the F(Q) curve -in inverse ångströms. This is essentially a limit, where sample -signal decays to the level of data noise.

    -
    - -
    -
    -terminationfunctions
    -
    - -
    -
    ---terminationfunctions=LIST
    -

    Optional list of termination functions to apply to the F(Q) data -before the Fourier transformation to the G(r) curve.

    -

    Termination functions help reduce termination ripples caused by the -finite Q-range. Each function tapers or truncates the F(Q) signal -between qmin and qmax.

    -

    This parameter may be specified as:

    -
      -

    • a single function name from the supported list

      • -

    • a list of comma-separated or space-separated function names, to be applied in order

      • -

    • the alias terminationfunction is also accepted

      • -
    -

    Supported function names:

    -
    -
    step

    Hard cutoff window. Sets F(Q) = 0 for -Q < qmin or Q > qmax.

    -
    -
    lorch

    Lorch window:

    -
    W(Q) = sin(pi * (Q - qmin) / (qmax - qmin))
-       / (pi * (Q - qmin) / (qmax - qmin))
-
    -
    -

    Applied only within the q-range; zero outside.

    -
    -
    -

    Examples:

    -
    CLI usage::
-
---terminationfunctions=lorch
---terminationfunctions="lorch, step"
-
-Configuration file usage::
-
-terminationfunctions = lorch
-terminationfunctions = "lorch, step"
-
    -
    -
    - -
    -
    -rmin
    -
    - -
    -
    ---rmin=FLOAT
    -

    Lower bound of the r-grid for the calculated PDF in ångströms.

    -
    - -
    -
    -rmax
    -
    - -
    -
    ---rmax=FLOAT
    -

    Upper bound of the r-grid for the calculated PDF in ångströms.

    -
    - -
    -
    -rstep
    -
    - -
    -
    ---rstep=FLOAT
    -

    Spacing of the r-grid for the calculated PDF in ångströms.

    -
    - -
    -
    -

    Other parameters

    -
    -
    -plot
    -
    - -
    -
    --p TYPES, --plot=TYPES
    -

    Plot the specified results. A comma separated list with one or -more items from “iq”, “sq”, “fq”, “gr”. No plot is produced when -empty, “none” or “NONE”. Setting this option turns on the -interactive mode.

    -
    - -
    -
    -interact
    -
    - -
    -
    --i, --interact
    -

    Start an IPython interactive session after processing all files. -Useful for tuning the configuration parameters or interactive -plotting. This is always on when plot option has been set. -See also Interactive mode for further details.

    -
    - -
    -
    -verbose
    -
    - -
    -
    ---verbose=VALUE
    -

    Level of detail for the program to report about its actions. -Possible values are “error”, “warning”, “info”, “debug”, “all” or an -integer number from 0 to 5. Messages are completely suppressed when -0, all messages are printed when verbose is 5 (“all”) or higher. -This option is useful for diagnostics of any unexpected behavior -in the program.

    -
    - -
    -
    - - -
    -
    - -
    -
    -
    -
    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.4.0/plotdata.html b/static_root/doc/pdfgetx/2.4.0/plotdata.html deleted file mode 100644 index 8ef9e772..00000000 --- a/static_root/doc/pdfgetx/2.4.0/plotdata.html +++ /dev/null @@ -1,288 +0,0 @@ - - - - - - - - - The plotdata program — diffpy.pdfgetx No version found. The correct version will appear in the released version. documentation - - - - - - - - - - - - - - - - - - - - -
    - - -
    - -
    -
    -
    - -
    -
    -
    -
    - -
    -

    The plotdata program

    -

    The PDFgetX3 software includes a simple stand-alone utility -plotdata for plotting text data files. In most cases -this program can be invoked from a command-shell as

    -
    plotdata file1.dat file2.dat
-
    -
    -

    which plots the numerical data from the text files file1.dat, -file2.dat together in a single graph. By default the first -column is used as an x variable and the second column is used for the -y values. After displaying the plot the program starts an IPython -interactive session allowing the user to modify or save plots. The -IPython session is initialized with the filenames variable -containing a list of plotted files. It also pre-loads the -plotdata() and findfiles() functions just as in PDFgetX3 -interactive session. The plotdata() -function works in a similar way as the plotdata program, -just its arguments need to be passed as Python function arguments -instead of command-line options. Thus an equivalent call of the -plotdata() function would be:

    -
    In [1]: plotdata(['file1.dat', 'file2.dat'])
-
    -
    -
    -

    Selecting files

    -

    The plotdata program includes a file searching feature -that is useful for selecting a set of files in large -directories. It is also convenient for Windows operating systems, -where the command prompt cannot do filename expansion for patterns -such as *.dat. The file search feature is controlled by the -following options:

    -
    -
    --f, --find
    -

    Use command line arguments as filename patterns and plot all matching -files. This option works in the same way as for -pdfgetx3, for full details see the -pdfgetx3 --find documentation. Note that -within command line the special patterns ^$<> need to be quoted -in double quotes (\”) so they are not processed by command shell.

    -
    - -
    -
    --l, --list
    -

    List the input files and exit. This is useful in conjunction -with the -f, --find option to check if data files -are selected as intended.

    -
    - -

    Assuming the current directory contains 20 files named -file1.dat, file2.dat, …, file20.dat, -the plotting of files 9 to 13 could be done (with a check listing) -as follows

    -
    $ plotdata -fl "<9-13>.dat"
-file9.dat
-file10.dat
-file11.dat
-file12.dat
-file13.dat
-$ plotdata -f "<9-13>.dat"
-
    -
    -

    Within an interactive IPython session the equivalent plot could be -produced by combining the plotdata() and findfiles() functions as

    -
    In [1]: plotdata(findfiles("<9-13>.dat"))
-
    -
    -
    -
    -

    Selecting x and y data

    -

    The plotdata program provides several ways of selecting -columns for x or y data and for specifying plot markers or line -formats. The columns can be specified using their integer index, -but one needs to keep in mind the index of the first column is “0” -as per Python indexing conventions. Here is a list of options -supported by the plotdata program (and function):

    -
    -
    --x X
    -

    index or name of the x-column to plot. See the -y option -for the supported syntax, but note that X may select only one -column. When set to “.” use the data-row index for x.

    -
    - -
    -
    --y Y
    -

    index or name of the y-column or columns to plot. The Y column -specification can be a comma separated list of indices, column names -or Python-like ranges, for example “1,2”, “G”, “1:4” (START:STOP, -same as “1,2,3”), “1:4:2” (START:STOP:STEP, same as “1,3”), or -“-2:” (same as “-2,-1”, i.e, the last 2 columns). Because column -indexing starts at “0” the second column must be specified as “1”.

    -

    The column names work if the data section in the file is preceded by -a headline of unique column names, for example:

    -
    x     square      cube
-1     1           1
-2     4           8
-3     9           27
-4     16          64
-
    -
    -

    For such data file the plotdata program will recognize column names -“x”, “square” and “cube” and an implicit “.” for row index.

    -
    - -
    -
    --s STYLE, --style=STYLE
    -

    optional plot format specification. See the -matplotlib.pyplot.plot() function -for a list of available formats.

    -
    - -
    -
    --L LOG, --log=LOG
    -

    axes to be plotted with logarithmic scaling, for example, “x”, “y” or -“xy”. Axes not listed in LOG will use linear scaling.

    -
    - -
    -
    --h, --help
    -

    display a brief usage info and exit.

    -
    - -
    -
    --V, --version
    -

    show program version and exit.

    -
    - -
    -
    ---manual
    -

    Open this manual page in a Web browser and exit.

    -
    - -
    -
    -

    Examples

    -

    The examples directory plotdata contains a sincos.dat -file that has 3-columns of values labeled as “x”, “sin” and “cos”. -Here are several examples of the plotdata capabilities -when used from command line - the user is encouraged to try them out:

    -
    plotdata sincos.dat
-plotdata -y 1,2 sincos.dat
-plotdata -x . -y 0:3 sincos.dat
-plotdata -y cos sincos.dat
-plotdata -x sin -y cos -sr-- sincos.dat
-
    -
    -

    An equivalent usage from a general IPython session would be:

    -
    ipython --matplotlib=auto
-In [1]: from diffpy.pdfgetx.plotdata import plotdata
-In [2]: plotdata('sincos.dat')
-In [3]: plotdata('sincos.dat', y=[1,2])
-In [4]: plotdata('sincos.dat', x='.', y=':3')
-In [5]: plotdata('sincos.dat', y='cos')
-In [6]: plotdata('sincos.dat', x='sin', y='cos', style='r--')
-
    -
    -
    -
    - - -
    -
    - -
    -
    -
    -
    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.4.0/quick-start.html b/static_root/doc/pdfgetx/2.4.0/quick-start.html deleted file mode 100644 index 82bae689..00000000 --- a/static_root/doc/pdfgetx/2.4.0/quick-start.html +++ /dev/null @@ -1,260 +0,0 @@ - - - - - - - - - Quick-start guide — diffpy.pdfgetx No version found. The correct version will appear in the released version. documentation - - - - - - - - - - - - - - - - - - - - -
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    Quick-start guide

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    This guide assumes that the software has been correctly installed and -its command line programs PDFgetX3, PDFgetN3 and PDFgetS3 can be -executed by typing pdfgetx3, pdfgetn3, or -pdfgets3 in a shell window. Please, refer to the installation section if this is not working yet.

    -
    -

    pdfgetx3 command

    -

    The pdfgetx3 program is a command-line application, therefore all -the input files and run-parameters are supplied either as command-line -arguments or through a configuration file. In general, the pdfgetx3 is -executed from a command shell as

    -
    pdfgetx3 [options] input1 input2 ... inputN
-
    -
    -

    The inputN stands for an input powder diffraction data. The -inputN file is a simple two-column text file, where the first -column corresponds to either the 2Θ diffraction angle, or a -momentum transfer, Q, in inverse nanometer or inverse ångström units. -The second column contains the corresponding X-ray intensities. The -input file may start with a header containing comments or metadata -related to the measurement. PDFgetX3 will ignore any text leading to a -long two-column section. The example input files in this manual were -created with the -FIT2D program using -its “chi” output format, thus we will also refer to them as “chi-files”. -A typical content of a “chi” file looks as follows:

    -
    Pt_bulk-00055.tif: 2-theta Scan
-2-Theta Angle (Degrees)
-
-       1465
- 2.0003892E-02  0.0000000E+00
- 6.0011677E-02  0.0000000E+00
- 1.0001946E-01  0.0000000E+00
- 1.4002724E-01  0.0000000E+00
- 1.8003502E-01  0.0000000E+00
- ...
-
    -
    -

    The command-line options are arguments that start with a dash “-” and -are used to specify run-parameters or modify the program behavior. The -options can be specified in a short form that consists of a dash and -a single character, or in a long, more descriptive format starting with -a doubled dash --. Options may require values. For short options, -the value may be joined to the option string, for example --w0.142774, while for the long options it has to be separated -with an equal sign, e.g., --wavelength=0.142774. Although -all the PDF calculation parameters can be passed as command line -options, it is often more convenient to set them in a configuration -file. When run parameter is present both in a configuration file and -as command-line option, the command-line value takes precedence. The -command-line options are all described in the Options and parameters section of -this manual. A brief summary of options can be also displayed by -executing

    -
    pdfgetx3 --help
-
    -
    -

    The best way of getting familiar with PDFgetX3 is to process -the example diffraction data described in the Tutorial. -In general, the first step is to create a commented configuration file pdfgetx3.cfg using:

    -
    pdfgetx3 --createconfig=pdfgetx3.cfg
-
    -
    -

    The configuration file can have any name, but it is preferable -to use either pdfgetx3.cfg or .pdfgetx3.cfg, -for these files are automatically loaded by PDFgetX3. All -other configuration files must be passed explicitly to the program -using the -c, --config option.

    -

    Open the pdfgetx3.cfg file in a text editor. The lines that -start with a hash mark # are comments and are not used. The lines -starting with a right brace [ denote sections in the configuration -file. The active lines are all formatted as -“NAME=VALUE”. Although PDFgetX3 has many options, in general only a few -of them are critical for the PDF calculation:

    -
      -

    • dataformat – specifies the input data format

      • -

    • wavelength – radiation wavelength in Å required for the -“twotheta” format.

      • -

    • composition – chemical composition of the sample

      • -

    • qmaxinst – upper Q boundary for a meaningful measurement -intensities.

      • -

    • qmax – Q-cutoff for the Fourier transformation that -yields the PDF.

      • -
    -

    Save the updated configuration file and run pdfgetx3 on the input data -FILENAME.chi as

    -
    pdfgetx3 --verbose=info -t gr FILENAME.chi
-
    -
    -

    Here the --verbose=info option makes pdfgetx3 -print -more information about its operation. This helps to verify -if the configuration file is indeed loaded and if the parameter -values are assigned as intended. The PDFgetX3 will not write -any output files unless told so. The -t gr option -tells the program to save the final G(r) curve as a -FILENAME.gr file in the working directory.

    -

    The saved .gr file contains a header with all the calculation -parameters and the input file name. The .gr file can be therefore -also used as a configuration file in order to redo the same -calculation

    -
    pdfgetx3 -c FILENAME.gr --plot=fq,gr
-
    -
    -

    Note this command does not include any .chi file and this will as -a result process the previously used input FILENAME.chi. -The --plot=fq,gr option tells PDFgetX3 to -display 2 plots for the reduced structure function F(Q) and the -final PDF G(r). The --plot option also implies an -interactive mode -therefore the program does not exit, but starts an -interactive IPython session. To exit the interactive mode, -type exit() and press Enter.

    -
    -
    -

    pdfgetn3 command

    -

    The pdfgetx3 and pdfgetn3 programs operate in a very similar fashion -apart from being set to assume X-ray and neutron data respectively. -The type of the scattering data can be also specified using the ---mode option. Running pdfgetn3 is nearly identical -to executing pdfgetx3 --mode=neutron. The only difference between -these commands is that pdfgetx3 checks for configuration files -pdfgetx3.cfg and .pdfgetx3.cfg, whereas -pdfgetn3 looks for pdfgetn3.cfg and .pdfgetn3.cfg.

    -
    -
    -

    pdfgets3 command

    -

    The pdfgets3 program is virtually the same as its counterparts for x-ray -(pdfgetx3) and neutron (pdfgetn3) diffraction data. The only difference -is that instead of referencing the well documented x-ray or neutron -scattering form factor data, a user-defined form factor data is used -for getting the PDF from a small-angle scattering (SAS) data. This -behavior is enabled by specifying mode = sas in the configuration -file or in the command line tool. The pdfgets3 program by default -searches for a configuration named pdfgets3.cfg and -.pdfgets3.cfg in order, when no configuration file is specified.

    -

    Please refer to the tutorial section for a step-by-step processing of the example data files and for demonstration of the capabilities in PDFgetX3, PDFgetN3 and PDFgetS3.

    -
    -
    - - -
    -
    - -
    -
    -
    -
    - - - - \ No newline at end of file diff --git a/static_root/doc/pdfgetx/2.4.0/release.html b/static_root/doc/pdfgetx/2.4.0/release.html deleted file mode 100644 index b41b8aad..00000000 --- a/static_root/doc/pdfgetx/2.4.0/release.html +++ /dev/null @@ -1,415 +0,0 @@ - - - - - - - - - Release notes — diffpy.pdfgetx No version found. The correct version will appear in the released version. documentation - - - - - - - - - - - - - - - - - - - -
    - - -
    - -
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    - -
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    Release notes

    -
    -

    2.4.0

    -

    Added:

    -
      -

    • Description of terminationfunctions to docs

      • -

    • New transformterminationfunctions transformation

      • -

    • CLI/CFG terminationfunctions options (step, lorch)

      • -
    -

    Fixed:

    -
      -

    • Build docs using the correct scikit-package script name

      • -

    • Reapply the Sphinx dependency m2r to m2r2 fix that seems to have inadvertently been lost

      • -
    -
    -
    -

    2.3.0

    -

    Added:

    -
      -

    • Added Cython build support.

      • -

    • Added .gitattribute for github release export.

      • -

    • Support for Python 3.11, 3.12, 3.13.

      • -

    • Use bg-mpl-stylesheets as a style for matplotlib plots.

      • -

    • test for the Q-array issue

      • -

    • Added instructions in wheels bundle.

      • -

    • Added pdfgetx3 –list-examples and pdfgetx3 –example commands to list available examples and copy example dir into pwd.

      • -
    -

    Changed:

    -
      -

    • Changed build process. Now build *.c sdist and c binary wheels for each platform and python version.

      • -

    • Updated tuneconfig.py to use the latest api from matplotlib.

      • -

    • Renamed get_atol() to get_atol_from_rtol() in test_pdfgetter.py

      • -

    • Standardized checking if a variable is an iterable.

      • -

    • Removed docs/source directory and makefiles in installation.

      • -

    • Changed twothetazerofit.ipy to output .png files instead of .pdf`and `.svgz files.

      • -
    -

    Fixed:

    -
      -

    • Refactored code for prefer_nodisplay_backend and suppress warnings.

      • -

    • Support scikit-package Level 5 standard (https://scikit-package.github.io/scikit-package/).

      • -

    • Replaced setup.py with pyproject.toml for releases.

      • -

    • Patched issue in kirkland.py that Q-array was being erroneously updated globally by the felectronatq function.

      • -

    • Fixed example import errors diffpy.structure because of Structure deprecation.

      • -

    • Fixed tutorial missing image file.

      • -
    -

    Removed:

    -
      -

    • Removed deprecated support for loadData, pdfgetxApplication.processFiles, pdfgetxApplication.clearSession, pdfgetxApplication.loadData.

      • -

    • Removed unused .coveragerc, .gitarchive.cfg, .gitattributes.

      • -

    • Support for Python 2.7, and Python <= 3.10

      • -

    • six, and other Py2 legacy code

      • -

    • Removed pre-commit run in merge-to-main workflow

      • -
    -
    -
    -

    Release notes

    -
    -
    -

    2.2.2

    -

    Fixed:

    -
      -

    • Changed self.guifigure.canvas.set_window_title to -self.guifigure.canvas.manager.set_window_title in -tuneconfig() to satisfy deprecated usage in matplotlib > 3.4

      • -
    -
    -
    -

    2.2.1

    -

    Added:

    -
      -

    • Added new API for accessing intermediate I(Q) plots as properties on -PDFGetter instances via properties following a naming convention of -PDFGetter.iq_<i>, where i is a zero‐based index of the intermediate -I(Q) to be returned. That is, rather than a single property returning an -array of the I(Q)’s that would then be indexed, users may directly name -an intermediate I(Q) (say, the first I(Q)) via a statement such as -PDFGetter.iq_0.

      • -
    -

    Fixed:

    -
      -

    • Restored previous API behavior of PDFGetter.iq returning the I(Q) plot -of the data. Since there are now multiple I(Q) plots (one after each -subsequent background subtraction), this property now returns the final -I(Q) data (i.e., the result of applying all background subtractions).

      • -

    • Fixed formatting of authors list on PDFgetXNS3_manual.pdf cover page.

      • -
    -
    -
    -

    2.2.0

    -

    Added:

    -
      -

    • Support for Python 3.10

      • -

    • Support for Python 3.9

      • -

    • Unittests for testing CLI functionality.

      • -

    • Tutorial example for multiple background subtractions (see -diffpy.pdfgetx/docs/examples/Multiple_Background_Subtraction).

      • -

    • New functionality for allowing multiple backgrounds to be subtracted from a -dataset accessed via using the plural name equivalent of any previously -singularly named variable (i.e., bgscale → bgscales, -backgroundfile → backgroundfiles, etc.) in both static config files -(i.e., *.cfg) and interactive plotting sessions. Each set of parameters -corresponding to a given background subtraction can also be manipulated by -a set of sliders present in the tuneconfig window of an interactive shell -session. In total, the multiple background subtraction functionality should -work identically to the previous single background subtraction functionality -except that the multiple background files and initial scale values cannot -be specified through a pure CLI command (i.e., it must be specified either in -a config file or added/modified during an interactive plotting session).

      • -

    • Added extra test cases for testing the PDFGetter class.

      • -

    • Added extra test cases for testing the PDFConfig class.

      • -
    -

    Changed:

    -
      -

    • Changed python versions specified in requirements.txt files to be in the range -of the respective minor version rather than fixed to the Python X.Y.0 version.

      • -

    • Python version support policy now follows NEP 29 <https://numpy.org/neps/nep-0029-deprecation_policy.html>.

      • -

    • Changed versions used in conda-recipe/build.sh to reflect currently supported -Python versions.

      • -

    • Changed Sphinx dependency m2r to m2r2.

      • -

    • Added Connor J. Bracy and Zach Thatcher to contributors in AUTHORS.rst.

      • -

    • Added Connor J. Bracy to internal authors list and PDFgetXNS3_manual.pdf.

      • -
    -

    Removed:

    -
      -

    • Removed support for Python 3.5 and 3.6.

      • -
    -
    -
    -

    2.1.2

    -

    Fixed:

    -
      -

    • Fixed the command provided to the users in the installation instructions which -incorrectly instructed them to setup a Python environment in which pdfgetx -could be installed by using the flag –python=3.8 to the correct usage of -this flag as python=3.8.

      • -
    -
    -
    -

    2.1.1

    -

    Added:

    -
      -

    • Support for Python 3.8

      • -
    -
    -
    -

    2.1.0

    -

    Added:

    -
      -

    • New mode sas for processing Small Angle Scattering data and for using custom -scattering factors.

      • -

    • qmax-pushes-qmin coupling of sliders in the tuneconfig tool.

      • -

    • New program pdfgets3 and IPython magic %pdfgets3.

      • -
    -

    Changed:

    -
      -

    • Software distribution format to a universal Python wheel.

      • -

    • tuneconfig dialog to access full Q-range with all qmin, qmax, and qmaxinst -sliders. Increased range for the rpoly slider.

      • -
    -

    Deprecated:

    -
      -

    • Software distribution in setuptools egg package.

      • -
    -

    Removed:

    -
      -

    • Removed support for Python 3.4.

      • -
    -

    Fixed:

    -
      -

    • Support backslash in the –find option path argument on Windows. -Both forward and back slashes are allowed on Windows, but other -platforms must use forward slash.

      • -

    • Recipe for platform-dependent Anaconda package.

      • -

    • Bogus test failure when installed in symlinked directory.

      • -
    -
    -
    -

    2.0.0

    -

    Added:

    -
      -

    • New mode neutron for processing constant-wavelength neutron scattering data.

      • -

    • Correction for an offset of diffractometer zero angle.

      • -

    • Configuration parameter twothetazero and command-line option –twothetazero -for position of the actual zero angle in diffractometer degrees.

      • -

    • New program pdfgetn3 and IPython magic %pdfgetn3.

      • -

    • Separate configuration file pdfgetn3.cfg for the pdfgetn3 program.

      • -

    • New sub-package diffpy.pdfgetx.apps for entry points to all programs.

      • -

    • Table of electron scattering factors from E. J. Kirkland, Advanced Computing in -Electron Microscopy.

      • -

    • The + operator for additive pattern groups when matching input files with -pdfgetx3 –find.

      • -

    • An optional slash-containing entry, e.g., dir/, to set the search path for -pdfgetx3 –find. Each pattern group may have one path entry which affects -the current and subsequent pattern groups. Pattern groups that have only the -path entry reuse the previous file patterns, for example, dir1/ .dat$ + dir2/ + dir3/.

      • -

    • The dotfiles flag argument to functs.findfiles to also find dot-starting files -without an explicit pattern.

      • -

    • Support for Python 3.7.

      • -

    • Tutorial examples for constant-wavelength neutron diffraction data.

      • -
    -

    Changed:

    -
      -

    • Initialization arguments of PDFConfig to set initial configuration values.

      • -

    • path argument of functs.findfiles to give one search path instead of a list of paths.

      • -

    • pdfgetx3 –find to search only the current directory and stop searching in –datapath.

      • -

    • Improved PDF accuracy by removing repeated Q-grid interpolation.

      • -

    • Handling of dot files by pdfgetx3 –find and the functs.findfiles function. The -dotfiles are by default ignored unless explicitly selected by a “^.” pattern.

      • -

    • Return type of functs.findfiles from IPython SList to a simple list.

      • -

    • Rename camel-case interactive functions to lowercase, i.e., loaddata, processfiles, clearsession.

      • -

    • Use config.datapath lookup in processfiles(filename).

      • -
    -

    Deprecated:

    -
      -

    • Function cromermann.felectronatq for electron scattering factors calculation using -Mott-Bethe approximate formula.

      • -

    • IPython extension module diffpy.pdfgetx.ipy_pdfgetx3. Use diffpy.pdfgetx.ipy_magics instead.

      • -

    • Camel-case functions loadData, processFiles, clearSession.

      • -
    -

    Removed:

    -
      -

    • Support for Python 2.6.

      • -

    • Processing of environment variable PDFGETX3PATH.

      • -

    • Support for IPython 0.x.

      • -

    • Obsolete variable __gitsha__ from the version module.

      • -

    • Processing of command-line options in PDFConfig class.

      • -

    • Implicit loading of configuration files in PDFConfig instantiation.

      • -
    -

    Fixed:

    -
      -

    • Import of all objects from matplotlib.pyplot into an interactive session started by plotdata.

      • -

    • Inaccurate G interpolation when rstep is comparable to pi / qmax.

      • -

    • Lone anchor patterns ^, $ to match everything.

      • -
    -
    -
    -

    1.2

    -

    Added:

    -
      -

    • Support for Python 3.4, 3.5, 3.6 in addition to Python 2.6 and 2.7.

      • -

    • Support for IPython 5.0 <https://ipython.org> with preserved compatibility with -IPython 0.10 and later.

      • -

    • Support for matplotlib 2.0 <https://matplotlib.org>.

      • -

    • New option –log=LOG for the plotdata program to set logarithmic scale for either -of x or y axis. The plotdata() function learnt a new log argument with the same purpose.

      • -

    • New argument ax for the plotdata() function that select a specific matplotlib axis for plotting.

      • -

    • Support for Unicode filenames and values in the config interactive variable.

      • -

    • Processing of parentheses and fractional stoichiometries in chemical formulas as in -Pb (Ti Zr)1/2 O3.

      • -

    • Explanatory error message when PDFgetX3 was installed for unsupported Python.

      • -
    -

    Changed:

    -
      -

    • The egg package file was enhanced to support all Python versions. The software is now -distributed in a single egg rather than multiple eggs per each Python version.

      • -

    • PDFgetX3 option –force to take a boolean argument (yes, no, true, etc.) or -once. The configuration parameter force can be likewise set to a bool or to a string -“once”. This enables a safer one-time overwrite of existing output files.

      • -

    • Plot labels to use a proper Unicode “Å” (Ångström) symbols. The “Å” symbol is also used within -units in output files.

      • -

    • The usecols argument of the loadData() function to also accept scalars, open-end slice -objects and string-denoted slices such as “1:3” or “1:”.

      • -

    • The plotdata program and plotdata() function to accept open-end slices for the y-columns selection.

      • -

    • The IPython magic function %pdfgetx3 to set the _exit_code variable as do generic shell commands run from IPython.

      • -

    • Inline documentation to use NumPy-style Napoleon format, which is human readable and can be included in the manual.

      • -

    • Release scripts to build software package bundles and documentation in binary-reproducible way.

      • -
    -

    Deprecated:

    -
      -

    • Compatibility with Python 2.6.

      • -

    • Support for IPython 0.x.

      • -

    • Variable __gitsha__ in the version module which was renamed to __git_commit__.

      • -
    -

    Removed:

    -
      -

    • The hold argument of the plotdata() function, because it was deprecated in matplotlib.

      • -

    • Support for multiple x-columns in plotdata program and plotdata() function.

      • -

    • Import of all objects from numpy module into the interactive session. NumPy is available under the np name instead.

      • -
    -

    Fixed:

    -
      -

    • Avoid duplicate “.gr.gr” extension when pdfgetx3 is run with option –output=f.gr.

      • -

    • Crash on loading custom configuration section from a local file, when that section is missing in global configuration.

      • -

    • Missing checkbox in the tuneconfig dialog caused by matplotlib bug.

      • -
    -
    -
    - - -
    -
    -
    - -
    - -
    -

    © Copyright 2025, The Trustees of Columbia University in the City of New York.

    -
    - - Built with Sphinx using a - theme - provided by Read the Docs. - - -
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    -

    © Copyright 2025, The Trustees of Columbia University in the City of New York.

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deleted file mode 100644 index b7e3b63d..00000000 --- a/static_root/doc/pdfgetx/2.4.0/tutorial.html +++ /dev/null @@ -1,908 +0,0 @@ - - - - - - - - - Tutorial — diffpy.pdfgetx No version found. The correct version will appear in the released version. documentation - - - - - - - - - - - - - - - - - - - - -
    - - -
    - -
    -
    -
    - -
    -
    -
    -
    - -
    -

    Tutorial

    -

    In this tutorial we will convert several X-ray powder diffraction -patterns to corresponding PDFs. The examples can be obtained by -doing the following:

    -
    $ pdfgetx3 --list-examples
-
-Ni
-plotdata
-Au_DNA_NPA
-Multiple_Background_Subtraction
-Pt
-CeO2
-n-Sapphire
-n-twothetazero-fit
-Si90Ni10
-Menthol
-BaTiO3
-
-$ pdfgetx3 --example Ni
-
-Example copied to: .../Ni
-
    -
    -
    -

    Nickel X-ray PDF

    -
    -

    predefined configuration file

    -

    Change to the Ni directory. The file named -ni300mesh_300k_nor_1-5.chi contains powder X-ray data -measured from nickel at the Advanced Photon Source beamline -6ID-D. The file contains two columns for the 2Θ scattering -angles and X-ray intensities. The second file -kapton_bgrd_300k_nor_2-3.chi contains the background -measurement, i.e., the intensities from an empty capillary. -Finally, the pdfgetx3.cfg contains a complete configuration -parameters for converting the powder pattern to a PDF. Since all -processing parameters are already defined in the configuration file, -the first PDF calculation is very simple and involves running the -pdfgetx3 program -with the powder data file as an argument:

    -
    $ pdfgetx3 ni300mesh_300k_nor_1-5.chi
-
    -
    -

    For the first run there should be no output on the screen, -however a new file, ni300mesh_300k_nor_1-5.gr should appear -in the work directory. -We can use the plotdata program, -included with this software, to plot the output data:

    -
    $ plotdata ni300mesh_300k_nor_1-5.gr
-
    -
    -

    This will open a graph window and start an IPython interactive session. -To exit and close the figure, type exit() on the IPython prompt. -Let’s run the program again, but now with a ---verbose=info -option, to show more details about the program actions.

    -
    $ pdfgetx3 --verbose=info ni300mesh_300k_nor_1-5.chi
-
-INFO:applying pdfgetx3 defaults
-INFO:set config.mode = xray
-INFO:searching for default config file /home/user/.pdfgetx3.cfg
-INFO:searching for default config file .pdfgetx3.cfg
-INFO:searching for default config file pdfgetx3.cfg
-INFO:loaded default config file pdfgetx3.cfg
-INFO:reset config.twothetazero = 0.0
-INFO:parsing config file section [DEFAULT]
-INFO:set config.dataformat = twotheta
-INFO:set config.backgroundfile = kapton_bgrd_300k_nor_2-3.chi
-INFO:set config.outputtypes = gr
-INFO:set config.wavelength = 0.142774
-INFO:set config.composition = Ni
-INFO:set config.qmaxinst = 26.5
-INFO:set config.qmax = 26.0
-INFO:set config.rmin = 0.0
-INFO:set config.rmax = 30.0
-INFO:set config.rstep = 0.01
-INFO:finished parsing config file
-INFO:processing command line options
-INFO:set config.verbose = info
-INFO:finished with command line options
-INFO:using 1 input files from the command line.
-INFO:configuring PDFGetter mode 'xray'
-INFO:calling config_xray
-INFO:started PDF processing.
-INFO:processing 'ni300mesh_300k_nor_1-5.chi'
-INFO:resolved output file '' as 'ni300mesh_300k_nor_1-5.gr'
-WARNING:ni300mesh_300k_nor_1-5.gr already exists.
-WARNING:Use "--force=yes" or "--force=once" to overwrite.
-INFO:elapsed time: 0.095
-
    -
    -

    Here we can see what configuration files are searched, which of them -get loaded and what are the effective values of the processing -parameters. Unless the --verbose option is in effect, the -program will show only messages that have either WARNING or ERROR -importance. The warning line above indicates no output has been -written, because that file already exists. This safety check can be -overruled with the --force=yes option, upon -which pdfgetx3 would overwrite any existing files.

    -

    PDFgetX3 output files start with a header that lists all the processing -parameters and can be used as a valid configuration file with the --c option. Another option, --plot=[iq,sq,fq,gr] turns on plotting of the final PDF or of some other result. A -side effect of the --plot option is that pdfgetx3 starts in -an interactive mode, so the user can manipulate or save the plots. To -put it all together, we are now going to redo the original PDF and plot -its reduced total scattering function F(Q) and the PDF curve G(r). This -time the chi file is not necessary, because the input file is already -listed in the gr file that is now used as a custom configuration:

    -
    $ pdfgetx3 -c ni300mesh_300k_nor_1-5.gr --plot=fq,gr
-
-WARNING:ni300mesh_300k_nor_1-5.gr already exists.
-WARNING:Use "--force=yes" or "--force=once" to overwrite.
-
-Variables related to PDF processing:
-
-pdfgetter    -- PDFGetter used for calculation.
-config       -- configuration data used by PDFGetter.
-                See config.inputfiles for a list of inputs.
-iraw         -- matrix of input raw intensities with 2 rows per file.
-iq sq fq gr  -- intermediate results per each input file stored
-                as matrix rows.
-
-Functions:
-
-tuneconfig   -- dynamically tune configuration variables.
-processfiles -- process specified data files.
-clearsession -- clear all elements from the inputfiles, iraw,
-                iq, sq, fq and gr variables.
-plotdata     -- plot all or selected columns from a text data file.
-loaddata     -- load all or selected columns from a text data file.
-findfiles    -- search for files matching the specified patterns.
-
-Use "%pdfgetx3" for a fresh run without exiting IPython.
-In [1]:
-
    -
    -

    This will open a plot figure similar to

    -_images/nickelfqgr.png -

    Because of the interactive mode implied by plotting, -the program enters an IPython session. -The IPython environment is preloaded with several extra functions -and variables related to the PDF processing. For example, the -config variable stores all the configuration parameters, -and its content can be displayed with the print() -function as

    -
    In [1]: print(config)
-
-configfile = ni300mesh_300k_nor_1-5.gr
-configsection = DEFAULT
-dataformat = twotheta
-...
-qmax = 26.0
-...
-
    -
    -

    The processfiles() function allows to redo the -whole calculation and plotting process for additional input files or -for new parameter values. To plot the F(Q) and G(r) -curves calculated at Qmax = 22 Å-1, we can call -processfiles() and pass it a keyword argument for -the new qmax as follows:

    -
    In [2]: processfiles(qmax=22)
-
-# the qmax parameter was updated to a new value, thus
-In [3]: config.qmax
-Out[3]: 22
-
    -
    -

    There should be now two lines in each plot axis corresponding to -the results at Qmax equal 26 and 22 Å-1. To exit the program, -type exit().

    -
    -
    -

    processing from scratch

    -

    We have already encountered the command-line option -c -for specifying a custom configuration file. A special argument “NONE”, -will make pdfgetx3 ignore any configuration files and start up in a -default state. We can use this feature to process the nickel PDF as if -we did not have any configuration file:

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi
-
-WARNING:Nothing to do, use "-t" or "--plot" options.
-ERROR:Configuration error: wavelength not specified.
-ERROR:See "--help" for more hints.
-
    -
    -

    There is an error, for the wavelength is necessary to convert -the scattering angle 2Θ to momentum transfer Q. The -X-ray wavelength was 0.142774 Å, which can be passed with the --w, --wavelength option:

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774
-
-...
-ERROR:Configuration error: Chemical composition not known.
-ERROR:See "--help" for more hints.
-
    -
    -

    There is still an error. The PDF calculation needs an average -X-ray scattering factor of the material, which is obtained from -sample chemical composition. The composition can be specified -with the --composition option. The example -below uses a “\\” character to indicate the command continues -on the next line. Such syntax works in Unix terminals, but -on Windows the command has to be typed all on a single line:

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \
-           --composition=Ni
-
-WARNING:Nothing to do, use "-t" or "--plot" options.
-...
-
    -
    -

    There was no error message this time, but the program complains -about a lack of action. The pdfgetx3 program does not write any results -unless instructed by the -t, --outputtypes option. -The outputtypes option recognizes the following result types: -“iq”, “sq”, “fq”, “gr”. One or more of these type strings, -separated by a comma, can be included with the --t option, which will produce the corresponding -output files. An empty string, such as -t "", or -t NONE -may be used to clear any outputtypes defined in the configuration file, -and avoid the unseemly file-exists warnings.

    -

    At this point, we will not write any output files, but will use the ---plot option to display the calculated curves. The ---plot accepts the same arguments as outputtypes, so to -display the F(Q) and G(r) curves we shall run

    -
    $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \
-           --composition=Ni --plot=fq,gr
-
-WARNING:qmaxinst reset to last nonzero point qmaxinst=28.0865680161
-WARNING:qmax reset to the data boundary qmaxinst=28.0865680161
-
    -
    -

    which should open the following plot window:

    -_images/nickelfqgrnoisy.png -

    The graphs look terrible. The PDF is very noisy and the F(Q) curve -shows a sudden break at about 27 Å-1. What happened? The powder -intensities are inaccurate at a very top of the detector angular range. -The interactive session is setup with -iraw, iq, sq, -fq, gr -variables for the original raw data and intermediate results. We -are going to plot the “iq” variable that has the input intensities -resampled on the Q grid. The matplotlib function -clf() clears the figure, -the iq variable is a two-row matrix with Q and I rows, and the -axis() -function lets us zoom to a given range:

    -
    In [1]: clf()
-In [2]: plot(iq[0], iq[1])
-Out[2]: [<matplotlib.lines.Line2D at 0x3e20f50>]
-In [3]: axis([20, 29, 0, 3000])
-Out[3]: [20, 29, 0, 3000]
-
    -
    -

    The graph shows a sudden drop in the raw intensities at 27 Å-1. -The qmaxinst variable defines a Q cutoff for a meaningful -instrument intensities and, to be on a safe side, we are going to set -it to 26.5 Å-1

    -
    In [4]: processfiles(qmaxinst=26.5)
-WARNING:qmax reset to the data boundary qmaxinst=26.5
-
    -
    -

    The updated curves looks reasonable without any oscillations and -breakpoints. The tuneconfig() function provides a -GUI-driven way for visualizing the processing parameters and their -effect on the results. Type tuneconfig() to execute the function, -which should open a new window with several sliders. Try to move -different sliders and see how do the F(Q) and G(r) curves change. -The rpoly parameter controls the degree of data-correction -polynomial and is an approximate low-r bound of reliable G -values. Once the parameters are tuned, they may be set to -exact values. We will also turn on the writing of the G(r) -curve and save it to an output file nicmd.gr:

    -
    In [14]: config.qmax = 26
-In [15]: config.outputtypes = 'gr'
-In [16]: config.output = 'nicmd'
-In [17]: processfiles()
-
    -
    -
    -
    -
    -

    Platinum X-ray series

    -

    PDFgetX3 has been designed to handle large series of data files. -With the fast area-detectors it is easy to measure hundreds of X-ray -patterns in a time or temperature series. Normally, these input -files need to be entered as command line arguments to the pdfgetx3 -program. This is usually no problem with Unix-like shells, which -expand filename patterns to a list of matching files. -However, such file generation is in general not available on Windows. -The input file names tend to include scan numbers which are useful -for selecting desired data, yet even with Unix shells it is -difficult to match a range of scan numbers -(z-shell being a notable exception).

    -
    -

    matching input files

    -

    The pdfgetx3 program includes a built-in function for finding -a set of input files. The command line arguments are normally taken as -input file names. However, if the -f, --find option is -present, the arguments are understood as patterns and the program looks -for files that match ALL of them. Another option --l, --list makes pdfgetx3 print out the matching files -without any other action, which can be used to verify if the patterns -match intended files.

    -

    We will try out this file search on platinum example files. Open a -terminal and navigate to the Pt directory. There should be a -series subdirectory with 6 chi files indexed from 903 to 908. -At first, let’s stay in the Pt directory and run the following -command

    -
    $ pdfgetx3 --list --find
-
-Pt_bulk-00055-pdfgetx2.gr
-Pt_bulk-00055-pdfgetx3.gr
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-pdfgetx3.cfg
-plotpdfcomparison.py
-
    -
    -

    Without any patterns the file search matches all files in the current -directory. Now let’s try to add name patterns. There are few special -patterns, for example ^ matches at the beginning of the filename, $ at the end and <N-M> matches a range of integer values from -N to M. The patterns containing ^$<> need to be quoted as -these characters have special meaning in the shell. Here are some -examples how it works.

    -

    Filenames containing “y”:

    -
    $ pdfgetx3 --list --find y
-empty_capillary-00032.chi
-plotpdfcomparison.py
-
    -
    -

    Filenames that containing both “y” and “chi”, here we use the -options --list and --find in an abbreviated -form -l and -f:

    -
    $ pdfgetx3 -lf y chi
-empty_capillary-00032.chi
-
    -
    -

    Filenames that start with “e”:

    -
    $ pdfgetx3 --list --find "^e"
-empty_capillary-00032.chi
-
    -
    -

    Filenames that contain character “2”:

    -
    $ pdfgetx3 --list --find 2
-Pt_bulk-00055-pdfgetx2.gr
-empty_capillary-00032.chi
-
    -
    -

    Filenames that contain numeric value “2”:

    -
    $ pdfgetx3 -lf "<2>"
-Pt_bulk-00055-pdfgetx2.gr
-
    -
    -

    The special argument + starts a new group of patterns to -generate extra files when they cannot be all covered by -a single set of patterns. For example, to match files that -contain contain both “bulk” and “chi” substrings and then -also those that have “empty” and “chi” in their names, use:

    -
    $ pdfgetx3 -lf bulk chi + empty chi
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-
    -
    -

    When pattern groups overlap the resulting matches are -made unique and each file is listed only once

    -
    $ pdfgetx3 -lf bulk chi + chi
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-
    -
    -
    -
    -

    data search path

    -

    Each group of PDFgetX3 patterns can have one entry containing -forward slash “/” to specify a non-current path that is searched -for input files. The path specification affects the current and -the following pattern groups unless they provide their own path. -The chi files numbered “903” to “905” and “908” from the -series subdirectory can be therefore matched using

    -
    $ pdfgetx3 -lf series/ "<903-905>" + 908
-series/Pt_bulk_ramp03-00903.chi
-series/Pt_bulk_ramp03-00904.chi
-series/Pt_bulk_ramp03-00905.chi
-series/Pt_bulk_ramp03-00908.chi
-
    -
    -

    The current directory can be selected using ./

    -
    $ pdfgetx3 -lf series/ 903 + ./ bulk chi
-series/Pt_bulk_ramp03-00903.chi
-Pt_bulk-00055.chi
-
    -
    -

    When additional pattern groups contain only the path -argument, they reuse the existing set of patterns. The -“.chi”-ending files in the current and series -directories can be thus found using

    -
    $ pdfgetx3 -lf ".chi$" + series/
-Pt_bulk-00055.chi
-empty_capillary-00032.chi
-series/Pt_bulk_ramp03-00903.chi
-series/Pt_bulk_ramp03-00904.chi
-series/Pt_bulk_ramp03-00905.chi
-series/Pt_bulk_ramp03-00906.chi
-series/Pt_bulk_ramp03-00907.chi
-series/Pt_bulk_ramp03-00908.chi
-
    -
    -
    -
    -

    output file names

    -

    By default the output files are saved in the current directory. The -output path, can be changed with the -o, --output option. -The -o recognizes several tokens that are replaced with -parts of the input file name, for example, “@b” expands to an -extension-stripped base name. In similar faction, “@o” is replaced -with the output type extension. Thus to generate PDFs for all files -in the series directory and save them in the -series-gr subfolder do

    -
    $ pdfgetx3 --find series/ "<900-910>.chi" --output=series-gr/@b.@o
-
    -
    -

    The extension “.@o” is automatic when not included anywhere in the -output file name. Thus to process the Pt series at Qmax = 18 Å-1 -while saving the results in the same folder, but with a “_qmax18” suffix -in their filenames do

    -
    $ pdfgetx3 --find series/ "<900-910>.chi" --qmax=18 -o series-gr/@b_qmax18
-
    -
    -

    For input file Pt_bulk_ramp03-00903.chi the -o option -above expands to output path series-gr/Pt_bulk_ramp03-00903_qmax18.gr. -The series-gr directory should now contain 12 “gr” files, -6 of them processed at Qmax = 27 Å-1 as given by configuration -file and 6 others processed at Qmax = 18 Å-1.

    -
    -

    See also

    -

    -o, --output for a list of output tokens

    -
    -
    -
    -
    -

    Interactive tuning of parameters

    -

    One of the most powerful features of PDFgetX3 is the ability to tune -PDF processing parameters in an interactive mode and immediately -visualize their effect on the results. To demonstrate this feature, -navigate to the Ni directory in the shell and process -the nickel PDF while plotting the F(Q) and G(r) curves. -Because of plotting the program will open an interactive IPython -session. The tuning mode can be then entered by calling the -tuneconfig() -function from the IPython environment

    -
    $ pdfgetx3 --plot=fq,gr ni300mesh_300k_nor_1-5.chi
-...
-In [1]: tuneconfig()
-
    -
    -

    The -tuneconfig() -function will by default add a second set of live lines -for the plotted curves and open a GUI dialog with sliders for the -tunable process parameters. Changing any slider would immediately -recalculate the PDF and update live lines in the plot.

    -_images/tunenickelfqgr.png -

    The constant data scale check-box rescales the result curves to a -constant maximum value. This is useful for assessing if a parameter -change produces different curve shape or if it just rescales the -results. The tunable parameters are described in the -PDF parameters section. -Only the active parameters are displayed in the tuneconfig GUI, -thus there would be no slider for the bgscale parameter -if PDF has been processed without any background data.

    -

    By default the -tuneconfig() -function displays the same curves as -specified by the --plot option, however it can be -configured to show arbitrary intermediate results or even visualize -selected steps in the PDF processing. We shall demonstrate this by -showing a live-plot of the polynomial correction together with the final -PDF. At first, we shall use the describe() method of the -pdfgetter() object to print out the chain of -transformations involved in the PDF processing and obtain a reference to -the transformation object t4 that applies the polynomial correction. -The transformation object can be then included in a list of plot -identifiers that are passed to the tuneconfig() function

    -
    $ pdfgetx3 -i ni300mesh_300k_nor_1-5.chi
-...
-Use "%pdfgetx3" for a fresh run without exiting IPython.
-
-In [1]: fig, ax = subplots(2)
-In [2]: pdfgetter.describe()
-0   TransformTwoThetaToQA
-    convert x data from twotheta to Q in 1/A
-1   TransformQGridRegular
-    Remove the data outside the (qmin, qmaxinst) range
-2   TransformBackground
-    subtract background intensity
-3   TransformXrayASFnormChris
-    scale and normalize intensities by x-ray scattering factors
-4   TransformSQnormRPoly
-    Normalize S(Q) by fitting a polynomial
-5   TransformSQToFQ
-    Convert S(Q) to F(Q).
-6   TransformFQgrid
-    Resample F(Q) to a regular grid suitable for FFT
-7   TransformFQToGr
-    Convert F(Q) to G(r).
-In [3]: t4 = pdfgetter.getTransformation(4)
-In [4]: tuneconfig([t4, 'gr'], axeslist=ax)
-In [5]: ax[0].legend(loc=2)
-
    -
    -

    The subplots() function above -is to create a new figure with 2 axes on top of each other. -Overall, the code above should display the following plot -and a GUI window:

    -_images/tunenickelt4gr.png -

    The tuning can be finished by clicking the Done button or closing the -tuneconfig GUI window. The parameter values can be thereafter adjusted -to a rounded values by setting an attribute of the config -object, for example:

    -
    In [5]: config.bgscale = 1.5
-
    -
    -

    Finally, to save the new results, we shall first confirm -outputtypes have been correctly set and then use the -processfiles() function to redo the calculations, plots and -data output for the updated configuration. Note that the -processfiles() function accepts keyword arguments for -configuration parameters. This is used at line In [8] to -turn on the force flag and is in effect a shortcut -for an extra config.force = True statement.

    -
    In [6]: config.outputtypes
-Out[6]: ['gr']
-In [7]: processfiles()
-WARNING:ni300mesh_300k_nor_1-5.gr already exists.
-WARNING:Use "--force=yes" or "--force=once" to overwrite.
-In [8]: processfiles(force=True)
-
    -
    -

    ni300mesh_300k_nor_1-5.gr was successfully saved at an -updated configuration for there were no warnings after the last call.

    -
    -
    -

    Neutron PDF

    -

    This example illustrates PDF extraction from -neutron powder data using pdfgetn3. -Navigate to the n-Sapphire directory in the shell. -The sapphire755.dat file contains powder diffraction data from -sapphire (α-Al2O3) -measured at the constant-wavelength PEARL instrument -at the Delft University of Technology. -The pdfgetn3.cfg configuration file specifies -processing parameters such as wavelength, -twothetazero, composition, and mode.

    -

    To extract the sapphire neutron PDF run

    -
    $ pdfgetn3 --verbose=info sapphire755.dat
-
-INFO:applying pdfgetn3 defaults
-INFO:set config.mode = neutron
-INFO:searching for default config file /home/user/.pdfgetn3.cfg
-INFO:searching for default config file .pdfgetn3.cfg
-INFO:searching for default config file pdfgetn3.cfg
-INFO:loaded default config file pdfgetn3.cfg
-INFO:reset config.twothetazero = 0.0
-INFO:parsing config file section [DEFAULT]
-INFO:set config.dataformat = twotheta
-INFO:set config.backgroundfile =
-INFO:set config.outputtypes = fq, gr
-INFO:set config.mode = neutron
-INFO:set config.wavelength = 1.0989
-INFO:set config.twothetazero = -0.38
-INFO:set config.composition = Al2O3
-INFO:set config.qmaxinst = 11.2
-INFO:set config.qmax = 11.2
-INFO:set config.rmin = 0.0
-INFO:set config.rmax = 20.0
-INFO:set config.rstep = 0.01
-INFO:finished parsing config file
-INFO:processing command line options
-INFO:set config.verbose = info
-INFO:finished with command line options
-INFO:using 1 input files from the command line.
-INFO:configuring PDFGetter mode 'neutron'
-INFO:calling config_neutron
-INFO:started PDF processing.
-INFO:processing 'sapphire755.dat'
-INFO:resolved output file '' as 'sapphire755.fq'
-INFO:written outpufile sapphire755.fq
-INFO:resolved output file '' as 'sapphire755.gr'
-INFO:written outpufile sapphire755.gr
-INFO:elapsed time: 0.097
-
    -
    -

    This will produce two files sapphire755.fq, sapphire755.gr -for the F(Q) and G(r) functions. -To compare them with expected results use

    -
    $ plotdata sapphire755-expected.fq sapphire755.fq
-$ plotdata sapphire755-expected.gr sapphire755.gr
-
    -
    -
    -
    -

    Fit twothetazero

    -

    For a good quality PDF it is essential to use powder patterns with -accurate values of Q. Some instruments may produce spectra with -a slightly offset scattering angle 2Θ which -causes inaccurate Q and a noticeably worse PDF. -In this example we fit a constant-wavelength neutron PDF from nickel -together with the twothetazero correction parameter for -diffractometer offset. -The procedure can be used to calibrate the zero correction from -a standard sample and then use it for subsequent PDF extractions. -The protocol can be also applied to fit zero correction in -a full-fledged PDF refinement in case -the zero offset may change for different samples.

    -

    This tutorial requires either Linux or Mac OS X platforms, -because the PDF fitting is conducted with -DiffPy-CMI, -which is not yet available for Windows. -If DiffPy-CMI is not yet installed, -we recommend to use Anaconda Python and set up a dedicated -Anaconda environment nbcmi for this tutorial. -This can be accomplished using the following steps:

    -
    $ conda create -n nbcmi -c diffpy python=3.13 diffpy-cmi
-$ conda activate nbcmi
-$ pip install path/to/diffpy.pdfgetx-VERSION.whl
-
    -
    -

    When these prerequisites are in place, -change to the n-twothetazero-fit directory -and open the self documented Jupyter notebook as follows

    -
    $ jupyter notebook fit-twothetazero.ipynb
-
    -
    -

    The notebook sets up and executes several PDF refinements and -compares the results from fits on uncorrected data and with -a fitted twothetazero. -After running all cells the notebook should produce similar graphs -as in the figure below.

    -
    -_images/twothetazerofit.png -
    -

    Refinement of nickel neutron PDF for (a) uncorrected data -and (b) with a refined zero correction. -The extracted PDFs are plotted as blue circles, -simulated PDFs as red lines and -the difference is plotted offset in green below.

    -
    -
    -

    The final refined zero offset in the notebook should be approximately -0.36°. -The correction produces experimental PDF with a remarkably better fit -residual Rw which is lowered from (a) 0.18 to (b) 0.05.

    -
    -
    -

    Small-angle-scattering PDF (sasPDF)

    -

    Here we illustrate how to extract a PDF from small-angle-scattering (sas) data using pdfgets3. -To do this, navigate to the Au_DNA_NPA directory in your terminal. -In this folder, you will find Au_DNA_NPA.chi and -Au_DNA_FF.chi files which correspond to diffraction data from -DNA-capped Au nanoparticle assemblies and from a DNA-capped Au -nanoparticle colloidal solution respectively. Those two files were -measured at X21 beamline, NSLS and published in D. Nykypanchuk, M. M. -Maye, D. van der Lelie, and O. Gang, Nature 451, 549 (2008).. We thank Prof. Oleg Gang (Columbia University) for sharing this data. The pdfgets3.cfg -configuration file specifies processing parameters such as formfactorfile (required by sas mode), qmin, qmax, and mode.

    -

    To extract the PDF of DNA-capped DNA nanoparticle assemblies

    -
    $ pdfgets3 --verbose=info Au_DNA_NPA.chi
-
-INFO:applying pdfgets3 defaults
-INFO:set config.mode = sas
-INFO:searching for default config file /home/user/.pdfgets3.cfg
-INFO:searching for default config file .pdfgets3.cfg
-INFO:searching for default config file pdfgets3.cfg
-INFO:loaded default config file pdfgets3.cfg
-INFO:reset config.twothetazero = 0.0
-INFO:parsing config file section [DEFAULT]
-INFO:set config.dataformat = QA
-INFO:set config.backgroundfile =
-INFO:set config.datapath = []
-INFO:set config.formfactorfile = Au_DNA_FF.chi
-INFO:set config.output =
-INFO:set config.outputtypes = fq, gr
-INFO:set config.force = yes
-INFO:set config.mode = sas
-INFO:set config.rpoly = 240.605
-INFO:set config.qmaxinst = 0.075
-INFO:set config.qmin = 0.01
-INFO:set config.qmax = 0.072
-INFO:set config.rmin = 100.0
-INFO:set config.rmax = 5000.0
-INFO:set config.rstep = 1.0
-INFO:set config.plot = iq, fq, gr
-INFO:set config.verbose = info
-INFO:finished parsing config file
-INFO:processing command line options
-INFO:set config.verbose = info
-INFO:finished with command line options
-INFO:using 1 input files from the command line.
-INFO:configuring PDFGetter mode 'sas'
-INFO:calling config_sas
-INFO:started PDF processing.
-INFO:processing 'Au_DNA_NPA.chi'
-INFO:resolved output file '' as 'Au_DNA_NPA.fq'
-INFO:written outpufile Au_DNA_NPA.fq
-INFO:resolved output file '' as 'Au_DNA_NPA.gr'
-INFO:written outpufile Au_DNA_NPA.gr
-INFO:elapsed time: 0.947
-
    -
    -

    This will save two files Au_DNA_NPA.fq, Au_DNA_NPA.gr in the same directory for the F(Q) and G(r) functions. This also plots F(Q) and G(r) functions in a pop-up window and the processing parameters such as rpoly or so may be tuned interactively by issuing command tuneconfig() in the IPython session as discussed above.

    -
    -
    -

    Multiple Background Subtraction

    -
    -

    Predefined configuration file

    -

    In this tutorial, we will show how to use the multiple-background subtraction -functionality by obtaining equivalent outputs from different, but equivalent, -subtractions. Change directory to the Multiple_Background_Subtraction -directory. The file named -ni300mesh_300k_nor_1-5.chi contains powder X-ray data measured from -nickel at the Advanced Photon Source beamline 6ID-D. The file contains two -columns for the 2Θ scattering angles and X-ray intensities. Similarly, -kapton_bgrd_300k_nor_2-3.chi contains the background data (i.e., the -intensities from an empty kapton capillary), and a duplicate file -kapton_bgrd_300k_nor_2-3_copy.chi contains the same dataset (this -duplication of the data is necessary when using the same background multiple -times as the internal system only stores a set of unique background filenames). -The last .chi file, TEST_blank-00000.chi, simply stores a null -dataset and can be used to show the invariance of the PDF under permutation of -the order of background subtractions as well as the fact that more than just -two backgrounds can be subtracted. There are also two config files -nickel.cfg and nickel_sub_two_half_backgrounds.cfg, each of -which contain a set of complete configuration parameters for converting the Ni -powder pattern to a PDF for the case of doing so via a single background -subtraction and a multiple background subtraction, respectively. Finally, there -is a fully processed G(r) file ni300mesh_300k_nor_1-5-expected.gr which -contains the expected output of producing the PDF of the Ni sample after -subtracting the kapton background. Since all processing parameters are already -defined in these configuration files, producing the PDF using multiple -background subtractions is very simple and involves running the pdfgetx3 program and specifying the multiple background subtraction -config file and the powder data file as arguments:

    -
    $ pdfgetx3 -c nickel_sub_two_half_backgrounds.cfg ni300mesh_300k_nor_1-5.chi
-
    -
    -

    The resulting G(r) file, ni300mesh_300k_nor_1-5.gr, is the result of -producing the PDF according to:

    -
    "ni300mesh_300k_nor_1-5.chi" - 0.5*"kapton_bgrd_300k_nor_2-3.chi"
-- 0.5*"kapton_bgrd_300k_nor_2-3.chi"
-
    -
    -

    Which should be equivalent to the case where the following single background -subtraction had been performed:

    -
    "ni300mesh_300k_nor_1-5.chi" - 1.0*"kapton_bgrd_300k_nor_2-3.chi"
-
    -
    -

    The fact that both of these result in the same PDF can be verified by comparing -the produced G(r) with the expected G(r) provided in the example:

    -
    $ plotdata ni300mesh_300k_nor_1-5-expected.gr ni300mesh_300k_nor_1-5.gr
-
    -
    -
    -
    -

    Interactive Multiple Background Subtraction

    -

    The multiple background subtraction functionality can also be carried out -interactively, as per the Interactive tuning of parameters section, using the plural forms -of the relevant variables (i.e., config.bgscales, config.backgroundfiles, -etc.).

    -
    -
    -
    - - -
    -
    - -
    -
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By -default, the :program:`pdfgetx3` program attempts to read -".pdfgetx3.cfg" file from the user HOME directory, then ".pdfgetx3.cfg" -and "pdfgetx3.cfg" files from the current working directory. -If configuration file has a different name, it needs to be specified -with the :option:`-c, --config <-c>` option. - -The easiest way of creating a configuration file is to generate -a template content using the :option:`--createconfig` option as :: - - pdfgetx3 --createconfig=test.cfg - -and then change the generated test.cfg file in your favorite text -editor. The configuration file follows a simple "varname=value" syntax, -any lines starting with "#" are ignored as comments. - -The configuration file has several sections marked as ``[SECTIONNAME]``. -The ``[DEFAULT]`` section is mandatory and it contains the default -global settings. Any other sections are optional and they are applied -only when selected with the :option:`-s, --section <-s>` option on the -command line. Thus :: - - pdfgetx3 --config=test.cfg --section=nacl - -would read the parameters from the ``[nacl]`` section after reading the -defaults. Having several sections in the configuration -file is useful when there are multiple measurements that share most of -the parameters, but differ in a few of them, for example in the chemical -composition. The configuration file can then contain sections per each -sample that define only the composition, while all other parameters are -specified just once in the global DEFAULT section. - - -Input files ------------------------------------------------------------------------- - -PDFgetX3 accepts input powder diffraction data in the form of two-column -text file, where the first column x is either the scattering angle -|twotheta| in degrees, momentum transfer *Q* in inverse nanometers or *Q* -in inverse ångströms. The second column y contains the corresponding -scattered intensities normalized per unit solid angle. The actual type -of the x-values is identified by the :confval:`dataformat` parameter. -The input files may contain header with comments or metadata, and the -actual data are read from the first long section of numerical values. - -The input files are usually passed as command-line arguments to the -:program:`pdfgetx3` program and must be paths accessible from the -current working directory. The environment variable - -.. index:: ! PDFGETX3PATH -.. envvar:: PDFGETX3PATH - - specifies additional directories that are searched for input and - background data files. The :envvar:`!PDFGETX3PATH` is a list of - absolute or relative paths separated by ``":"`` on Linux and Mac or - by ``";"`` on Windows, that are searched for input files, when - these cannot be found in the current working directory. - -The :option:`-d, --datapath <-d>` option may be used to define -additional data directories besides those in the -:envvar:`!PDFGETX3PATH`. - -When the :option:`--find <-f>` option is active, the pdfgetx3 arguments -are understood as filename patterns and the input files are searched -in the current and datapath directories. - - -Output files ------------------------------------------------------------------------- - -PDFgetX3 can produce up to four different output data files: - -* .iq, |IQ| -- These are the background-corrected - intensities sampled on a regular *Q*-space grid in inverse ångströms. - -* .sq, |SQ| -- This file contains the total scattering structure - function, with the intensities normalized by average scattering - factors and corrected by a polynomial fit. - -* .fq, |FQ| -- This file contains the reduced structure function equal - to *Q*\ (|SQ| - 1). - -* .gr, |Gr| -- this is the resultant PDF, where the first column is the - separation *r* in ångströms and the second is the function *G* in - Å\ :sup:`-2`. - -You can specify what output files should be produced by setting the -:confval:`outputtypes` parameter in the configuration file or by -passing the :option:`-t, --outputtypes <-t>` on the command line. - -The header of all output files contains the parameter values that were -used in the calculation and thus it is by itself a valid configuration -file. When passed as an argument to the :option:`--config <-c>` option, -the PDFgetX3 will reproduce the previous calculation. diff --git a/static_root/doc/pdfgetx3/_sources/index.rst.txt b/static_root/doc/pdfgetx3/_sources/index.rst.txt deleted file mode 100644 index 16fdb9d9..00000000 --- a/static_root/doc/pdfgetx3/_sources/index.rst.txt +++ /dev/null @@ -1,36 +0,0 @@ -.. PDFgetX3 documentation master file, created by - sphinx-quickstart on Tue Sep 21 18:35:11 2010. - You can adapt this file completely to your liking, - but it should at least contain the root `toctree` directive. - -######################################################################## -PDFgetX3 User Manual -######################################################################## - -| Release |release| -| |today| - -======================================================================== -Table of contents -======================================================================== - - -.. toctree:: - :maxdepth: 2 - - intro - install - quick-start - tutorial - files - interact - options - plotdata - release - -======================================================================== -Indices -======================================================================== - -* :ref:`genindex` -* :ref:`search` diff --git a/static_root/doc/pdfgetx3/_sources/install.rst.txt b/static_root/doc/pdfgetx3/_sources/install.rst.txt deleted file mode 100644 index 37ad3c93..00000000 --- a/static_root/doc/pdfgetx3/_sources/install.rst.txt +++ /dev/null @@ -1,135 +0,0 @@ -Installation -======================================================================== - - -Software requirements ------------------------------------------------------------------------- - -PDFgetX3 has been written in Python programming language, therefore -to use the software, you must have Python 3.6, 3.5, 3.4, 2.7 or 2.6 -installed. In addition, the following third-party Python libraries -are also required: - -* setuptools - tools for installing Python packages -* six - Python 2 and 3 compatibility library -* NumPy - library for scientific computing with Python -* matplotlib - Python plotting library -* IPython - enhanced interactive Python shell - -Standard Python releases can be obtained from -https://www.python.org/downloads. -The third-party libraries can be found at the -`Python Package Index `_ -or using any Internet search engine. - -Another more convenient option is to obtain one of the science-oriented -Python distributions such as -`Anaconda Python `_, -`Enthought Canopy `_ or -`PythonXY `_, -These distributions already include all the necessary libraries, so the -required Python software can be all installed in one step. - -On Linux operating systems the third-party libraries are usually -included in a system software package repository. For example on an -Ubuntu Linux computer the software dependencies can be all installed -with a single shell command :: - - sudo apt-get install \ - python3-six python3-setuptools python3-numpy python3-matplotlib ipython3 - -This may be, of course, just as well accomplished using the GUI -driven Synaptic package manager. Other Linux -distributions may use different software management tools, -but the names of the necessary packages should be very similar -to those above. - -On Windows operating system, it may be necessary to add the -``C:\Python35`` directory and the scripts directory -``C:\Python35\Scripts`` to the system :envvar:`!PATH`. -Some Python distributions may already do that as a part of their -installation process. The easiest way to check is to start the -:program:`Command Prompt`, type there ``python`` and see if this -starts the Python interpreter. - - -PDFgetX3 installation ------------------------------------------------------------------------- - -PDFgetX3 is distributed as a Python egg package, which can be obtained -from the `Columbia Technology Ventures -`__. -Once all the required software is in -place, start the command prompt on Windows or a Unix terminal on Linux -or Mac, navigate to the directory that contains the egg file and -execute the following command:: - - python -m easy_install ./diffpy.pdfgetx-VERSION.egg - -Here VERSION needs to be replaced to match the actual filename. -It is critical to use one of the supported Python versions otherwise -the program would not work. On Linux and Mac operating systems the -installation may need to run with root user privileges, for example, -by prepending ``sudo`` to the command line above. -If root access is not available, use the -easy_install options :option:`!--user`, :option:`!--prefix` or -:option:`!--install-dir` to install PDFgetX3 to a user-writable -directory. - -To verify if pdfgetx3 has been correctly installed, -type the following command:: - - pdfgetx3 --version - -This should display the software version, which should be -the same as the VERSION string in the egg file name. -The installation also includes a :command:`plotdata` -command for an easy plotting of text data files. To verify -if plotdata works, run the ``plotdata --version`` command. - - -.. index:: %pdfgetx3 IPython magic -.. _my-pdfgetx3-magic: - -IPython magic command ------------------------------------------------------------------------- - -These instructions are intended for IPython users who would like to -integrate PDFgetX3 into their IPython environment. If you don't plan -to use IPython in such way, you can safely skip this section. - -When pdfgetx3 is run in an interactive mode, it starts IPython -interactive shell and defines an extra ``%pdfgetx3`` -magic command within the IPython session. The IPython magic -commands are not valid Python code, but work in a similar -fashion as standard shell commands. The ``%pdfgetx3`` magic can -be thus used with the same options and arguments as if run from -the shell. This is useful for processing more files, while -preserving all plots or variables that were already created -within the IPython session. - -The ``%pdfgetx3`` magic command can be defined permanently so it is -available in all IPython sessions. To make the ``%pdfgetx3`` -command permanent - -#. find the ``profile_default/ipython_config.py`` file and open it - in a text editor. If that file does not exists, - create it first by executing :: - - ipython profile create - -#. navigate to the paragraph that contains the - :py:data:`!c.InteractiveShellApp.extensions` and add there - the following line:: - - c.InteractiveShellApp.extensions = ['diffpy.pdfgetx.ipy_pdfgetx3'] - - There must be no leading indent, i.e., the text must start at the - very first column. - -.. note:: - - This setup works for the latest IPython 5.0 and for the older - versions going back to 0.13. For IPython 0.11 or 0.12 use - ``ipy012_pdfgetx3`` in the extension module name - instead of ``ipy_pdfgetx3``. diff --git a/static_root/doc/pdfgetx3/_sources/interact.rst.txt b/static_root/doc/pdfgetx3/_sources/interact.rst.txt deleted file mode 100644 index f1a04ded..00000000 --- a/static_root/doc/pdfgetx3/_sources/interact.rst.txt +++ /dev/null @@ -1,133 +0,0 @@ -Interactive mode -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 -.. py:currentmodule:: _interactive_ - -The interactive mode is activated by using either the -:option:`-i, --interact <-i>` option or a non-empty -:option:`--plot <-p>` option. In the interactive mode -the program starts an IPython interactive shell and pre-loads several -functions and variables related to the PDF calculation. It also defines -a ``%pdfgetx3`` macro, which can be used with the same command-line syntax -as the :program:`pdfgetx3` program from a system shell. The interactive -session is also initialized with all functions from the matplotlib -:py:mod:`!pylab` module for convenient plotting. The functions and -variables related to PDF processing are: - -.. py:function:: pdfgetter - - Instance of the :py:class:`!PDFGetter` class which serves as a - low-level function that calculates the PDF. This is a callable - object, which takes as an argument a pair of input arrays for - (two-theta, intensity). It can be also called with a keyword - argument ``filename=FILE``, which would read the input arrays - from the specified file. When called with no arguments, - it calculates PDF from the last input data. - - :return: - A pair of output arrays *(r, G)*. - -.. interactvar:: config - - Instance of the :py:class:`!PDFConfig` class that stores the - :ref:`parameters and input files ` for the program. - Use ``print(config)`` to display the current configuration values. - This is the same object as :data:`!pdfgetter.config`. Configuration - may be changed by setting a respective attribute of the - :interactvar:`!config` object, for example:: - - In [1]: config.qmax = 21 - - The :py:data:`!config` values may be also changed by calling the - :py:func:`pdfgetter` or :py:func:`processFiles` function with a - corresponding keyword argument, for example - ``processFiles(qmax=20, force="once")``. - -.. interactvar:: iraw - iq - sq - fq - gr - - These variables are assigned the input raw intensities and the - intermediate results, stored as matrix rows. The matrix rows - correspond to twotheta1, intensity1, twotheta2, intensity2, etc. - Because matrices are iterated row first, the raw intensities - from all input files can be plotted with the matplotlib plot - function as ``plot(*iraw)``. - - These variables should be considered read-only and are reset - with subsequent PDF calculations. - -.. py:function:: tuneconfig(plotids=None, pdfgetter=None, axeslist=None) - - Show a GUI dialog for interactive tuning of configuration variables. - - :arg plotids: - string or iterable that specify what interactive plots should be - tuned. By default the same as config.plot. Can be also an - integer index or name of a transformation in pdfgetter or a - reference to a :py:class:`!Transformation` object. - - :arg pdfgetter: - optional PDFGetter object to be tuned. This is by default - the interactive :py:func:`pdfgetter` object. - - :arg axeslist: - optional list of matplotlib Axes for displaying the interactive - plots. When None, use subplot(N, 1, i) to create the parent axes. - - .. note:: - - Changes from :py:func:`!tuneconfig` apply only to the configuration - and results in memory. Use the :py:func:`processFiles` function - to save them to disk. - - .. seealso:: :ref:`my-tuneconfig` tutorial - -.. py:function:: processFiles(filename=None, **kwargs) - - Process all input files again with the current configuration values. - This is a higher-level function than :py:func:`pdfgetter`, as - it also saves output files and produces plots as specified by the - :interactvar:`config` object. - - :arg filename: - One or more input files to be converted to PDFs and saved or - plotted according to the :py:data:`!config` settings. Use the - previous list of input files when not specified. - - :arg kwargs: - optional keyword arguments that are applied to the :py:data:`!config` - object, for example ``(force="once", qmax=18)``. - - This function updates the :interactvar:`config.inputfiles ` - list and the :interactvar:`iraw`, :interactvar:`iq`, - :interactvar:`sq`, :interactvar:`fq` and :interactvar:`gr` - interactive variables. - -.. py:function:: clearSession() - - Clear all elements from the :interactvar:`config.inputfiles ` - and also the - :interactvar:`iraw`, :interactvar:`iq`, :interactvar:`sq`, - :interactvar:`fq` and :interactvar:`gr` variables. - - :return: - No return value. - -.. py:currentmodule:: diffpy.pdfgetx -.. autofunction:: loadData - -.. py:currentmodule:: diffpy.pdfgetx.plotdata -.. autofunction:: plotdata - - This function is defined in the - :py:mod:`!diffpy.pdfgetx.plotdata` module. - -.. py:currentmodule:: diffpy.pdfgetx -.. autofunction:: findfiles - - .. seealso:: :ref:`Table of special patterns ` diff --git a/static_root/doc/pdfgetx3/_sources/intro.rst.txt b/static_root/doc/pdfgetx3/_sources/intro.rst.txt deleted file mode 100644 index 49a47fae..00000000 --- a/static_root/doc/pdfgetx3/_sources/intro.rst.txt +++ /dev/null @@ -1,51 +0,0 @@ -Introduction -======================================================================== - -PDFgetX3 is a simple yet powerful program for converting X-ray powder -diffraction data to atomic Pair Distribution Functions (PDFs). -PDFgetX3 can be used in a batch mode to convert a series of data files -without user intervention. PDFgetX3 can be also run in an interactive -mode that allows to control process parameters and plot the PDFs -and any intermediate results. Users can interactively tune the -PDF processing parameters, visualize their effect on the results and -adjust them to their optimum values. The PDFgetX3 software comes with a -Python library of PDF processing functions, which can be easily used in -custom Python scripts. - - -.. index:: license - -License notice ------------------------------------------------------------------------- - -.. include:: ../../LICENSENOTICE.txt - - -.. index:: authors - -Authors ------------------------------------------------------------------------- - -This code was written by members of the Billinge Group at -Columbia University including: - -Pavol Juhás, -Timur Davis, -Christopher Farrow, -Simon Billinge. - - -.. index:: citation, reference - -Reference ------------------------------------------------------------------------- - -If you use this program for a scientific research that leads -to publication, we ask that you acknowledge use of the program -by citing the following paper in your publication: - - P. Juhás and T. Davis, C. L. Farrow, S. J. L. Billinge - `PDFgetX3: A rapid and highly automatable program for processing - powder diffraction data into total scattering pair distribution - functions `_, - *J. Appl. Cryst.* **46**, 560-566 (2013) diff --git a/static_root/doc/pdfgetx3/_sources/options.rst.txt b/static_root/doc/pdfgetx3/_sources/options.rst.txt deleted file mode 100644 index 191638a1..00000000 --- a/static_root/doc/pdfgetx3/_sources/options.rst.txt +++ /dev/null @@ -1,337 +0,0 @@ -Options and parameters -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 - -PDFgetX3 is very flexible in allowing users to customize the actions -of the program. It has a number of parameters that can be -specified either in configuration file or as a command line options. -Here is a complete description of the parameters and options used by -the program. - - -.. Note :: - - The command line options start with a leading "-" and can - be only used as command line arguments when starting the - :program:`pdfgetx3` program. Within configuration file the parameter - names are plain words without any leading dashes. Finally, - parameters can be also set in the interactive mode as attributes of - the :interactvar:`config` object, but the assignments must be valid - Python statements. Here are examples of setting composition of - a processed specimen using each of these forms: - - #. assigned in the configuration file ``pdfgetx3.cfg``:: - - ... - composition = CaTiO3 - ... - - #. set as a command-line option when starting :program:`pdfgetx3`:: - - pdfgetx3 --composition=CaTiO3 - - #. set in the IPython interactive mode:: - - pdfgetx3 -i - ... - In [1]: config.composition = "CaTiO3" - - -Program operation ------------------------------------------------------------------------- - -.. option:: -h, --help - - Display a brief usage information with a list of command line options - and exit. - -.. option:: -V, --version - - Display the program version and exit. - -.. option:: --manual - - Open this manual in a Web browser and exit. - -.. option:: -f, --find -.. _my-findpatterns: - - Select input files that match all filename patterns. The command - line arguments are normally taken as input files. However, - with the :option:`!--find` option the arguments are understood as - filename patterns and the matching files are all used as inputs. - The input files are searched in the current and :confval:`!datapath` - directories. The file search stops at the first directory that - contains any matching files. The search patterns are interpreted - as fixed strings, all of which must be present in the matching file - name. The syntax supports several special patterns: - - .. tabularcolumns:: |l|p{0.75\textwidth}| - - +---------+------------------------------------------------------------+ - | ^ | match at the beginning of the string, i.e., ``^start`` | - | | matches only filenames that start with "start". | - +---------+------------------------------------------------------------+ - | $ | match the end of string, for example, ``.chi$`` matches | - | | file names that end with ".chi". | - +---------+------------------------------------------------------------+ - | | match number *N* preceded by any number of leading zeros, | - | | e.g., ``<7>`` would match in "f7.chi", "f007.chi", but not | - | | in "f77.chi". | - +---------+------------------------------------------------------------+ - | | match an integer range from *N* to *M* inclusive. | - | | The matched number may have one or more leading zeros. | - +---------+------------------------------------------------------------+ - | <7-> | match number 7 or larger. | - +---------+------------------------------------------------------------+ - | <-7> | match number 7 or smaller. | - +---------+------------------------------------------------------------+ - | <-> | match any integer number. | - +---------+------------------------------------------------------------+ - - The ``^$<>`` characters are often special to the Unix or Windows - command shells, therefore they need to be enclosed in double - quotes (\\") when used on the command line. - - See also :confval:`datapath`, :envvar:`PDFGETX3PATH` and - :ref:`tutorial examples `. - -.. option:: -l, --list - - List all input files and exit. This is useful with the - :option:`!--find` option to verify if the input files - are matched as intended. - - -Configuration file options ------------------------------------------------------------------------- - -.. option:: -c CONFIG, --config=CONFIG - - Read custom configuration file after loading the default ones. - Do not load any configuration file when "NONE". - -.. option:: -s NAME, --section=NAME - - Load the custom configuration file section ``[SectionName]`` after - loading the ``[DEFAULT]`` section. This is useful for creating - several configuration variants in a single configuration file. - -.. option:: --createconfig=FILE - - Write template configuration to a new FILE and exit. Write - to the standard output when FILE is "-". - -See also the :ref:`configuration file ` section -for further details. - -.. _my-ioparameters: - -Input and output options ------------------------------------------------------------------------- - -.. confval:: inputfile - - This parameter allows to specify one or more input files in the - configuration file, one file per line. The :confval:`!inputfile` - is only used if no input files were provided on the - :program:`pdfgetx3` command line. - -.. confval:: dataformat -.. option:: --format=FORMAT - - Format of input files. Available formats are: ``twotheta``, ``QA``, - ``Qnm`` corresponding to a two-column text data where the first - column is either the scattering angle |twotheta| in degrees, *Q* in - inverse ångströms or *Q* in inverse nanometers. - -.. confval:: backgroundfile -.. option:: -b FILE, --background=FILE - - Optional datafile with background intensities from an empty sample - holder. It must be in the same dataformat as other input files. - -.. _my-datapath: -.. confval:: datapath -.. option:: -d DATAPATH, --datapath=DATAPATH - - One or more extra directories to be searched for input or - background data files. The default path is given by the - :envvar:`PDFGETX3PATH` environment variable. The :option:`!-d` - option can be specified several times to add more directories, these - are prepended in front of any default value. Within configuration - file the datapath directories have to be listed each on a separate - line. - - A special value "NONE" (or "none") clears any previously defined - paths and only the further paths, if any, would be searched for - inputs. - -.. confval:: output -.. option:: -o OUTPUT, --output=OUTPUT - - Output file name, write to the standard output when "-". The - :option:`-t, --outputtypes <-t>` option controls what results are - being saved. Normally the OUTPUT is used as a custom basename for - the output files. The OUTPUT may contain @f, @h, @r, @e, @t, @b, @o - tokens, which are expanded as follows: - - ===== ================== ======================================= - token example definition - ===== ================== ======================================= - @h dir1/dir2 the input file head directory or '.' - @r dir1/dir2/filename the input path with extension removed - @e dat the input file extension without '.' - @t filename.dat the tail component of the input file - @b filename the tail component with extension removed - @o gr the output extension iq, sq, fq or gr - ===== ================== ======================================= - - An empty value works the same as "@b.@o" and saves the data - in the current directory with a proper extension for the - saved results. When "@o" is not present in the OUTPUT, it is - appended as a default filename extension. - -.. confval:: outputtypes -.. option:: -t TYPES, --outputtypes=TYPES - - Result types to be saved, one or more comma separated values. - Supported values are "iq", "sq", "fq", "gr", corresponding to the - |IQ|, |SQ|, |FQ| and |Gr| curves; these are also used as output - file extensions. - - Result files are not written when empty, "none" or "NONE". - -.. confval:: force -.. option:: --force=FORCE - - Overwrite existing output files. By default the output - files are not written if they already exist. Possible values - in a configuration file are "true", "yes", "on", "1" or - "false", "no", "off", "0" or "once". The special value "once" - permits one overwrite and then resets ``config.force`` to - ``False``. Note that in interactive mode the values assigned - to ``config.force`` are converted to Python :py:class:`bool` - unless equal to "once". - - -.. _my-pdfparameters: - -PDF parameters ------------------------------------------------------------------------- - -.. - .. confval:: mode - .. option:: --mode=STRING - - The PDF calculator configuration mode, i.e., name of the calculator - setup. The available modes correspond to the radiation type used - in the powder experiment and these are: 'xray', 'electron', 'neutron' - - The 'electron' and 'neutron' modes are under development and should - not be considered reliable. - -.. confval:: wavelength -.. option:: -w FLOAT, --wavelength=FLOAT - - X-ray wavelength in ångströms. This value is required - for the "twotheta" dataformat in order to convert the scattering - angles |twotheta| to a momentum transfer *Q*. For other data formats - the wavelength is not necessary and may be left undefined. - -.. confval:: composition -.. option:: --composition=STRING - - Chemical composition of the sample. Supported formats are - "PbTi0.5Zr0.5O3", "Pb 1 Ti 1/2 Zr 1/2 O 3" or "CH3 (CH2)3 OH". - Space characters are ignored, unit counts can be omitted, but it is - important to use a proper upper and lower case in atom symbols. - Elements can appear several times in the formula, e.g., "CH3 CH3", - and the formula may contain parentheses or fractional - stoichiometries. - -.. confval:: bgscale -.. option:: --bgscale=FLOAT - - Scaling of the background intensities loaded from the - :confval:`backgroundfile`, by default 1. - -.. confval:: rpoly -.. option:: --rpoly=FLOAT - - *r*\ -limit for the maximum frequency in the |FQ| correction - polynomial. The PDF is unreliable at shorter *r*, however a very - small rpoly would disable polynomial correction and give noisy PDF. - Larger values produce closer fits with a higher degree polynomial, - but when too large, they might smooth-out a useful signal in the - data. The default is 0.9. - -.. confval:: qmaxinst -.. option:: --qmaxinst - - The *Q* cutoff for the meaningful input intensities in inverse - ångströms. Some data files may contain trailing zeros - or unreliable intensities at the upper bound of the detector range. - The :confval:`!qmaxinst` defines a threshold for unreliable data. - The parameter is also used as an upper boundary for the polynomial - fit correction of the |SQ| data. - -.. confval:: qmin -.. option:: --qmin - - The lower *Q*-limit for the Fourier transformation of the |FQ| curve - in inverse ångströms. - -.. confval:: qmax -.. option:: --qmax - - The upper *Q*-limit for the Fourier transformation of the |FQ| curve - in inverse ångströms. This is essentially a limit, where sample - signal decays to the level of data noise. - -.. confval:: rmin -.. option:: --rmin=FLOAT - - Lower bound of the *r*-grid for the calculated PDF in ångströms. - -.. confval:: rmax -.. option:: --rmax=FLOAT - - Upper bound of the *r*-grid for the calculated PDF in ångströms. - -.. confval:: rstep -.. option:: --rstep=FLOAT - - Spacing of the *r*-grid for the calculated PDF in ångströms. - - -Other parameters ------------------------------------------------------------------------- - -.. confval:: plot -.. option:: -p TYPES, --plot=TYPES - - Plot the specified results. A comma separated list with one or - more items from "iq", "sq", "fq", "gr". No plot is produced when - empty, "none" or "NONE". Setting this option turns on the - interactive mode. - -.. confval:: interact -.. option:: -i, --interact - - Start an IPython interactive session after processing all files. - Useful for tuning the configuration parameters or interactive - plotting. This is always on when plot option has been set. - See also :doc:`interact` for further details. - -.. confval:: verbose -.. option:: --verbose=VALUE - - Level of detail for the program to report about its actions. - Possible values are "error", "warning", "info", "debug", "all" or an - integer number from 0 to 5. Messages are completely suppressed when - 0, all messages are printed when verbose is 5 ("all") or higher. - This option is useful for diagnostics of any unexpected behavior - in the program. diff --git a/static_root/doc/pdfgetx3/_sources/plotdata.rst.txt b/static_root/doc/pdfgetx3/_sources/plotdata.rst.txt deleted file mode 100644 index a2b5fd95..00000000 --- a/static_root/doc/pdfgetx3/_sources/plotdata.rst.txt +++ /dev/null @@ -1,165 +0,0 @@ -.. index:: plotdata (program) -.. _cmd-plotdata: - -The plotdata program -======================================================================== - -.. include:: abbreviations.txt -.. program:: plotdata - -The PDFgetX3 software includes a simple stand-alone utility -:program:`plotdata` for plotting text data files. In most cases -this program can be invoked from a command-shell as :: - - plotdata file1.dat file2.dat - -which plots the numerical data from the text files :file:`file1.dat`, -:file:`file2.dat` together in a single graph. By default the first -column is used as an *x* variable and the second column is used for the -*y* values. After displaying the plot the program starts an IPython -interactive session allowing the user to modify or save plots. The -IPython session is initialized with the :data:`!filenames` variable -containing a list of plotted files. It also pre-loads the -|plotdata| and |findfiles| functions just as in the -:program:`pdfgetx3` interactive session. The :py:func:`!plotdata` -function works in a similar way as the :program:`plotdata` program, -just its arguments need to be passed as Python function arguments -instead of command-line options. Thus an equivalent call of the -:py:func:`!plotdata` function would be:: - - In [1]: plotdata(['file1.dat', 'file2.dat']) - - -selecting files ------------------------------------------------------------------------- - -The :program:`plotdata` program includes a file searching feature -that is useful for selecting a set of files in large -directories. It is also convenient for Windows operating systems, -where the command prompt cannot do filename expansion for patterns -such as ``*.dat``. The file search feature is controlled by the -following options: - -.. option:: -f, --find - - Use the command line arguments as filename patterns and plot the - files matching all patterns. This works almost the same as the - :option:`pdfgetx3 --find ` option, however - :program:`plotdata` does not recognize :confval:`datapath` and - searches for files only in the current directory. The filename - patterns are described in the - :option:`pdfgetx3 --find ` section. - If patterns contain any special characters ``^$<>`` they need to be - enclosed in double quotes (\\") on the command line so they don't get - interpreted by the command shell. - -.. option:: -l, --list - - List the input files and exit. This is useful in conjunction - with the :option:`!-f, --find` option to check if data files - are selected as intended. - -Assuming the current directory contains 20 files named -:file:`file1.dat`, :file:`file2.dat`, ..., :file:`file20.dat`, -the plotting of files 9 to 13 could be done (with a check listing) -as follows :: - - $ plotdata -fl "<9-13>.dat" - file9.dat - file10.dat - file11.dat - file12.dat - file13.dat - $ plotdata -f "<9-13>.dat" - -Within an interactive IPython session the equivalent plot could be -produced by combining the |plotdata| and |findfiles| functions as :: - - In [1]: plotdata(findfiles("<9-13>.dat")) - - -selecting x and y data ------------------------------------------------------------------------- - -The :program:`plotdata` program provides several ways of selecting -columns for x or y data and for specifying plot markers or line -formats. The columns can be specified using their integer index, -but one needs to keep in mind the index of the first column is "0" -as per Python indexing conventions. Here is a list of options -supported by the *plotdata* program (and function): - - -.. option:: -x X - - index or name of the x-column to plot. See the :option:`-y` option - for the supported syntax, but note that *X* may select only one - column. When set to "." use the data-row index for x. - -.. option:: -y Y - - index or name of the y-column or columns to plot. The *Y* column - specification can be a comma separated list of indices, column names - or Python-like ranges, for example "1,2", "G", "1:4" (START:STOP, - same as "1,2,3"), "1:4:2" (START:STOP:STEP, same as "1,3"), or - "-2:" (same as "-2,-1", i.e, the last 2 columns). The column - indexing starts at "0" therefore the second column needs to be - specified as "1". - - The column names work if the data section in the file is preceded by - a headline of unique column names, for example:: - - x square cube - 1 1 1 - 2 4 8 - 3 9 27 - 4 16 64 - - For this file the plotdata program will recognize column names - "x", "square" and "cube" and an implicit "." for row index. - -.. option:: -s STYLE, --style=STYLE - - optional plot format specification. See the - :func:`matplotlib.pyplot.plot` function - for a list of available formats. - -.. option:: -L LOG, --log=LOG - - axes to be plotted with logarithmic scaling, for example, "x", "y" or - "xy". Axes not listed in *LOG* will use linear scaling. - -.. option:: -h, --help - - display a brief usage info and exit. - -.. option:: -V, --version - - show program version and exit. - -.. option:: --manual - - Open this manual page in a Web browser and exit. - - -plotdata examples ------------------------------------------------------------------------- - -The :file:`examples/plotdata` directory contains a :file:`sincos.dat` -file that has 3-columns of data labeled as "x", "sin" and "cos". -Here are several examples of the :program:`plotdata` capabilities -when used from command line - the user is encouraged to try them out:: - - plotdata sincos.dat - plotdata -y 1,2 sincos.dat - plotdata -x . -y 0:3 sincos.dat - plotdata -y cos sincos.dat - plotdata -x sin -y cos -sr-- sincos.dat - -An equivalent usage from a general IPython session would be:: - - In [1]: from diffpy.pdfgetx.plotdata import plotdata - In [2]: plotdata('sincos.dat') - In [3]: plotdata('sincos.dat', y=[1,2]) - In [4]: plotdata('sincos.dat', x='.', y=':3') - In [5]: plotdata('sincos.dat', y='cos') - In [6]: plotdata('sincos.dat', x='sin', y='cos', style='r--') diff --git a/static_root/doc/pdfgetx3/_sources/quick-start.rst.txt b/static_root/doc/pdfgetx3/_sources/quick-start.rst.txt deleted file mode 100644 index 0d9cdef2..00000000 --- a/static_root/doc/pdfgetx3/_sources/quick-start.rst.txt +++ /dev/null @@ -1,118 +0,0 @@ -.. index:: pdfgetx3 (program) -.. _cmd-pdfgetx3: - -Quick-start guide -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 - -This guide assumes that the PDFgetX3 program has been correctly -installed and can be executed by typing :program:`pdfgetx3` in a shell -window. Please, refer to the :doc:`installation ` section if -this is not working yet. - -The pdfgetx3 program is a command-line application, therefore all -the input files and run-parameters are supplied either as command-line -arguments or through a configuration file. In general, the pdfgetx3 is -executed from a command shell as :: - - pdfgetx3 [options] input1 input2 ... inputN - -The :file:`inputN` stands for an input powder diffraction data. The -:file:`inputN` file is a simple two-column text file, where the first -column corresponds to either the |twotheta| diffraction angle, or a -momentum transfer, *Q*, in inverse nanometer or inverse ångström units. -The second column contains the corresponding X-ray intensities. The -input file may start with a header containing comments or metadata -related to the measurement. PDFgetX3 will ignore any text leading to a -long two-column section. The example input files in this manual were -created with the -`FIT2D program `_ using -its "chi" output format, thus we will also refer to them as "chi-files". - -The command-line options are arguments that start with a dash "-" and -are used to specify run-parameters or modify the program behavior. The -options can be specified in a short form that consists of a dash and -a single character, or in a long, more descriptive format starting with -a doubled dash ``--``. Options may require values. For short options, -the value may be joined to the option string, for example -:option:`!-w0.142774`, while for the long options it has to be separated -with an equal sign, e.g., :option:`!--wavelength=0.142774`. Although -all the PDF calculation parameters can be passed as command line -options, it is often more convenient to set them in a configuration -file. When run parameter is present both in a configuration file and -as command-line option, the command-line value takes precedence. The -command-line options are all described in the :doc:`options` section of -this manual. A brief summary of options can be also displayed by -executing :: - - pdfgetx3 --help - -The best way of getting familiar with PDFgetX3 is to process -the example diffraction data described in the :doc:`tutorial`. -In general, the first step is to create a commented configuration file -``pdfgetx3.cfg`` using:: - - pdfgetx3 --createconfig=pdfgetx3.cfg - -The configuration file can have any name, but it is preferable -to use either :file:`pdfgetx3.cfg` or :file:`.pdfgetx3.cfg`, -for these files are automatically loaded by PDFgetX3. All -other configuration files must be passed explicitly to the program -using the :option:`-c, --config <-c>` option. - -Open the pdfgetx3.cfg file in a **text** editor. The lines that -start with a hash mark ``#`` are comments and are not used. The lines -starting with a right brace ``[`` denote sections in the configuration -file. The active lines are all formatted as -"NAME=VALUE". Although PDFgetX3 has many options, in general only a few -of them are critical for the PDF calculation: - -* :confval:`dataformat` -- specifies the input data format - -* :confval:`wavelength` -- radiation wavelength in Å required for the - "twotheta" format. - -* :confval:`composition` -- chemical composition of the sample - -* :confval:`qmaxinst` -- upper *Q* boundary for a meaningful measurement - intensities. - -* :confval:`qmax` -- *Q*-cutoff for the Fourier transformation that - yields the PDF. - -Save the updated configuration file and run pdfgetx3 on the input data -:file:`FILENAME.chi` as :: - - pdfgetx3 --verbose=info -t gr FILENAME.chi - -Here the :option:`--verbose=info <--verbose>` option makes pdfgetx3 -print -more information about its operation. This helps to verify -if the configuration file is indeed loaded and if the parameter -values are assigned as intended. The PDFgetX3 will not write -any output files unless told so. The :option:`-t gr <-t>` option -tells the program to save the final |Gr| curve as a -:file:`FILENAME.gr` file in the working directory. - -The saved .gr file contains a header with all the calculation -parameters and the input file name. The .gr file can be therefore -also used as a configuration file in order to redo the same -calculation :: - - pdfgetx3 -c FILENAME.gr --plot=fq,gr - -Note this command does not include any .chi file and this will as -a result process the previously used input :file:`FILENAME.chi`. -The :option:`--plot=fq,gr <-p>` option tells PDFgetX3 to -display 2 plots for the reduced structure function |FQ| and the -final PDF |Gr|. The :option:`!--plot` option also implies an -:doc:`interactive mode ` -therefore the program does not exit, but starts an -interactive IPython session. To exit the interactive mode, -type ``exit()`` and press Enter. - -Please refer to the :doc:`tutorial section ` for -a step-by step processing of the example files and for -demonstration of the PDFgetX3 functions. diff --git a/static_root/doc/pdfgetx3/_sources/release.rst.txt b/static_root/doc/pdfgetx3/_sources/release.rst.txt deleted file mode 100644 index 209958f9..00000000 --- a/static_root/doc/pdfgetx3/_sources/release.rst.txt +++ /dev/null @@ -1,86 +0,0 @@ -.. index:: release notes - -Release Notes -======================================================================== - -.. include:: abbreviations.txt - -PDFgetX3 version 1.2 ------------------------------------------------------------------------- - -Sources were updated to support Python 3.4, 3.5, 3.6 in addition -to Python 2.6 and 2.7. - -The egg software package was enhanced to support all Python -versions. PDFgetX3 is now distributed in a single egg file -rather than in multiple eggs per each Python version. - -Added support for `IPython 5.0 `__ with -continued compatibility for IPython 0.10 and later. - -Added support for `matplotlib 2.0 `__. - -Changed :ref:`pdfgetx3 ` option -:option:`--force ` to take -a boolean value ("yes", "no", "true", etc.) or "once". -The configuration parameter :confval:`force` can be -set to a bool or to a string ``'once'``. This enables -safe one-time overwrite of existing output files. - -The :ref:`plotdata ` program learned a new option -:option:`--log=LOG ` to set logarithmic scale -for *x* or *y* axis. The |plotdata| function added a new -*log* argument for the same purpose. - -Added *ax* argument for the |plotdata| function to select -a specific matplotlib axis for plotting. - -Removed *hold* argument from the |plotdata| function, -because it was deprecated in matplotlib. - -Added support for Unicode filenames and values in -the :interactvar:`config` interactive variable. - -Updated plotting code to use the Unicode "Å" (Ångström) symbol in -axes labels. The "Å" symbol is also used to denote units in output -files. - -The parser of chemical formulas learned to read parentheses -and fractional stoichiometry as in ``'Pb (Ti Zr)1/2 O3'``. - -The |loadData| argument *usecols* was updated to accept scalars, -open-end :py:class:`slice` objects and string-specified -slices, such as ``'1:3'`` or ``'1:'``. - -The :ref:`plotdata ` program and |plotdata| -function learned to take open-end slices for the y-columns -selection. The plotdata utilities dropped support for -multiple x-columns. - -The :ref:`pdfgetx3 ` program learned to -avoid duplicate extension ".gr.gr" when run with -:option:`--output=f.gr `. - -Fixed crash on loading custom configuration section, -which is missing in global configuration file, but -is present in the local one. - -Removed import of all :py:mod:`numpy` names into the -interactive session. NumPy is available under the -``np`` name instead. - -Corrected missing checkbox in the :any:`tuneconfig` -dialog, which was caused by a bug in matplotlib. - -Added explanatory message for PDFgetX3 installed for -an incompatible Python version. - -The IPython magic function :ref:`%pdfgetx3 ` -was changed to set ``_exit_code`` as do the shell commands -run from IPython. - -Inline documentation adopted NumPy-style Napoleon format, -which is human readable and can be included in the manual. - -The software package files and documentation were updated -to build in a binary reproducible way. diff --git a/static_root/doc/pdfgetx3/_sources/tutorial.rst.txt b/static_root/doc/pdfgetx3/_sources/tutorial.rst.txt deleted file mode 100644 index 6d1ae870..00000000 --- a/static_root/doc/pdfgetx3/_sources/tutorial.rst.txt +++ /dev/null @@ -1,531 +0,0 @@ -Tutorial -======================================================================== - -.. include:: abbreviations.txt -.. program:: pdfgetx3 -.. index:: example files -.. py:currentmodule:: diffpy.pdfgetx - -In this tutorial we will convert several X-ray powder diffraction -patterns to corresponding PDFs. Open a terminal on a Unix-based system -or a Command Prompt on Windows and navigate to the :file:`examples` -folder included with the PDFgetX3 distribution. The :file:`examples` -folder can be found in the parent "doc" directory relative to this -document or another option is to just search your file system for -one of the input files mentioned below. -The example files are also available at -http://www.diffpy.org/doc/pdfgetx3/pdfgetx3-examples.zip. - - -.. index:: examples - -Nickel X-ray PDF ------------------------------------------------------------------------- - -predefined configuration file -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - - -Change to the :file:`Ni` directory. The file named -:file:`ni300mesh_300k_nor_1-5.chi` contains powder X-ray data -measured from nickel at the Advanced Photon Source beamline -6ID-D. The file contains two columns for the |twotheta| scattering -angles and X-ray intensities. The second file -:file:`kapton_bgrd_300k_nor_2-3.chi` contains the background -measurement, i.e., the intensities from an empty capillary. -Finally, the :file:`pdfgetx3.cfg` contains a complete configuration -parameters for converting the powder pattern to a PDF. Since all -processing parameters are already defined in the configuration file, -the first PDF calculation is very simple and involves running the -:command:`pdfgetx3` program with the powder data file as an argument:: - - $ pdfgetx3 ni300mesh_300k_nor_1-5.chi - -For the first run there should be no output on the screen, -however a new file, :file:`ni300mesh_300k_nor_1-5.gr` should appear -in the work directory. We can use the :command:`plotdata` program, -installed with PDFgetX3, to plot the output data:: - - $ plotdata ni300mesh_300k_nor_1-5.gr - -This will open a graph window and start an IPython interactive session. -To exit and close the figure, type ``exit()`` on the IPython prompt. -Let's run the program again, but now with a -:option:`--verbose=info <--verbose>` -option, to show more details about the program actions. :: - - $ pdfgetx3 --verbose=info ni300mesh_300k_nor_1-5.chi - - INFO:checking for environment variable PDFGETX3PATH - INFO:searching for default config file /home/user/.pdfgetx3.cfg - INFO:searching for default config file .pdfgetx3.cfg - INFO:searching for default config file pdfgetx3.cfg - INFO:loaded default config file pdfgetx3.cfg - INFO:parsing config file section [DEFAULT] - INFO:set config.dataformat = twotheta - INFO:set config.backgroundfile = kapton_bgrd_300k_nor_2-3.chi - INFO:set config.outputtypes = gr - INFO:set config.wavelength = 0.142774 - INFO:set config.composition = Ni - INFO:set config.qmaxinst = 26.5 - INFO:set config.qmax = 26.0 - INFO:set config.rmin = 0.0 - INFO:set config.rmax = 30.0 - INFO:set config.rstep = 0.01 - INFO:finished parsing config file - INFO:processing command line options - INFO:set config.verbose = info - INFO:finished with command line options - INFO:using 1 input files from the command line. - INFO:configuring PDFGetter mode 'xray' - INFO:calling config_xray - INFO:started PDF processing. - INFO:processing 'ni300mesh_300k_nor_1-5.chi' - INFO:resolved output file '' as 'ni300mesh_300k_nor_1-5.gr' - WARNING:ni300mesh_300k_nor_1-5.gr already exists. - WARNING:Use "--force=yes" or "--force=once" to overwrite. - INFO:elapsed time: 0.08 - -Here we can see what configuration files are searched, which of them -get loaded and what are the effective values of the processing -parameters. Unless the :option:`!--verbose` option is in effect, the -program will show only messages that have either WARNING or ERROR -importance. The warning line above indicates no output has been -written, because that file already exists. This safety check can be -overruled with the :option:`--force=yes <--force>` option, upon -which pdfgetx3 would overwrite any existing files. - -PDFgetX3 output files start with a header that lists all the processing -parameters and can be used as a valid configuration file with the -:option:`-c` option. Another option, :option:`--plot=[iq,sq,fq,gr] -<-p>` turns on plotting of the final PDF or of some other result. A -side effect of the :option:`!--plot` option is that pdfgetx3 starts in -an interactive mode, so the user can manipulate or save the plots. To -put it all together, we are now going to redo the original PDF and plot -its reduced total scattering function |FQ| and the PDF curve |Gr|. This -time the chi file is not necessary, because the input file is already -listed in the gr file that is now used as a custom configuration:: - - $ pdfgetx3 -c ni300mesh_300k_nor_1-5.gr --plot=fq,gr - - WARNING:ni300mesh_300k_nor_1-5.gr already exists. - WARNING:Use "--force=yes" or "--force=once" to overwrite. - - Variables related to PDF processing: - - pdfgetter -- PDFGetter used for calculation. - config -- configuration data used by PDFGetter. - See config.inputfiles for a list of inputs. - iraw -- matrix of input raw intensities with 2 rows per file. - iq sq fq gr -- intermediate results per each input file stored - as matrix rows. - - Functions: - - tuneconfig -- dynamically tune configuration variables. - processFiles -- process specified data files. - clearSession -- clear all elements from the inputfiles, iraw, - iq, sq, fq and gr variables. - plotdata -- plot all or selected columns from a text data file. - loadData -- load all or selected columns from a text data file. - findfiles -- search for files matching the specified patterns. - - Use "%pdfgetx3" for a fresh run without exiting IPython. - In [1]: - -This will open a plot figure similar to - -.. image:: images/nickelfqgr.png - -Because of the :doc:`interactive mode ` implied by plotting, -the program -enters an IPython session. -The IPython environment is preloaded with several extra functions -and variables related to the PDF processing. For example, the -:interactvar:`config` variable stores all the configuration parameters, -and its content can be displayed with the :py:func:`print` -function as :: - - In [1]: print(config) - - args = ['-c', 'ni300mesh_300k_nor_1-5.gr', '--plot=fq,gr'] - configfile = ni300mesh_300k_nor_1-5.gr - ... - qmax = 26.0 - ... - -The :py:func:`.processFiles` function allows to redo the -whole calculation and plotting process for additional input files or -for new parameter values. To plot the |FQ| and |Gr| -curves calculated at |Qmax| = 22 |Ainv|, we can call -:py:func:`!processFiles` and pass it a keyword argument for -the new qmax as follows:: - - In [2]: processFiles(qmax=22) - - # the qmax parameter was updated to a new value, thus - In [3]: config.qmax - Out[3]: 22 - -There should be now two lines in each plot axis corresponding to -the results at |Qmax| equal 26 and 22 |Ainv|. To exit the program, -type ``exit()``. - - -processing from scratch -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -We have already encountered the command-line :option:`option -c <-c>` -for specifying a custom configuration file. A special argument "NONE", -will make pdfgetx3 ignore any configuration files and start up in a -default state. We can use this feature to process the nickel PDF as if -we did not have any configuration file:: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi - - WARNING:Nothing to do, use "-t" or "--plot" options. - ERROR:Configuration error: wavelength not specified. - ERROR:See "--help" for more hints. - -There is an error, for the wavelength is necessary to convert -the scattering angle |twotheta| to momentum transfer *Q*. The -X-ray wavelength was 0.142774 Å, which can be passed with the -:option:`-w, --wavelength <-w>` option:: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 - - ... - ERROR:Configuration error: Chemical composition not known. - ERROR:See "--help" for more hints. - -There is still an error. The PDF calculation needs an average -X-ray scattering factor of the material, which is obtained from -sample chemical composition. The composition can be specified -with the :option:`--composition` option. The example -below uses a "\\\\" character to indicate the command continues -on the next line. Such syntax works in Unix terminals, but -on Windows the command has to be typed all on a single line:: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \ - --composition=Ni - - WARNING:Nothing to do, use "-t" or "--plot" options. - ... - -There was no error message this time, but the program complains -about a lack of action. The pdfgetx3 program does not write any results -unless instructed by the :option:`-t, --outputtypes <-t>` option. -The outputtypes option recognizes the following result types: -"iq", "sq", "fq", "gr". One or more of these type strings, -separated by a comma, can be included with the -:option:`!-t` option, which will produce the corresponding -output files. An empty string, such as ``-t ""``, or ``-t NONE`` -may be used to clear any outputtypes defined in the configuration file, -and avoid the unseemly file-exists warnings. - -At this point, we will not write any output files, but will use the -:option:`--plot <-p>` option to display the calculated curves. The -:option:`!--plot` accepts the same arguments as outputtypes, so to -display the |FQ| and |Gr| curves we shall run :: - - $ pdfgetx3 -c NONE ni300mesh_300k_nor_1-5.chi -w 0.142774 \ - --composition=Ni --plot=fq,gr - - WARNING:qmaxinst reset to last nonzero point qmaxinst=28.0865680161 - WARNING:qmax reset to the data boundary qmaxinst=28.0865680161 - -which should open the following plot window: - -.. image:: images/nickelfqgrnoisy.png - -The graphs look terrible. The PDF is very noisy and the |FQ| curve -shows a sudden break at about 27 |Ainv|. What happened? The powder -intensities are inaccurate at a very top of the detector angular range. -The interactive session is setup with -:interactvar:`iraw`, :interactvar:`iq`, :interactvar:`sq`, -:interactvar:`fq`, :interactvar:`gr` -variables for the original raw data and intermediate results. We -are going to plot the "iq" variable that has the input intensities -resampled on the *Q* grid. The matplotlib function -:py:func:`~matplotlib.pyplot.clf` clears the figure, -the iq variable is a two-row matrix with *Q* and *I* rows, and the -:py:func:`~matplotlib.pyplot.axis` -function lets us zoom to a given range:: - - In [1]: clf() - In [2]: plot(iq[0], iq[1]) - Out[2]: [] - In [3]: axis([20, 29, 0, 3000]) - Out[3]: [20, 29, 0, 3000] - -The graph shows a sudden drop in the raw intensities at 27 |Ainv|. -The :confval:`qmaxinst` variable defines a *Q* cutoff for a meaningful -instrument intensities and, to be on a safe side, we are going to set -it to 26.5 |Ainv| :: - - In [4]: processFiles(qmaxinst=26.5) - WARNING:qmax reset to the data boundary qmaxinst=26.5 - -The updated curves looks reasonable without any oscillations and -breakpoints. The :py:func:`.tuneconfig` function provides a -GUI-driven way for visualizing the processing parameters and their -effect on the results. Type ``tuneconfig()`` to execute the function, -which should open a new window with several sliders. Try to move -different sliders and see how do the |FQ| and |Gr| curves change. -The :confval:`rpoly` parameter controls the degree of data-correction -polynomial and is an approximate low-*r* bound of reliable *G* -values. Once the parameters are tuned, they may be set to -exact values. We will also turn on the writing of the |Gr| -curve and save it to an output file :file:`nicmd.gr`:: - - In [14]: config.qmax = 26 - In [15]: config.outputtypes = 'gr' - In [16]: config.output = 'nicmd' - In [17]: processFiles() - - -Platinum data series ------------------------------------------------------------------------- - -PDFgetX3 has been designed to handle large series of data files. -With the fast area-detectors it is easy to measure hundreds of X-ray -patterns in a time or temperature series. Normally, these input -files need to be entered as command line arguments to the pdfgetx3 -program. This is usually no problem with Unix-like shells, which -expand filename patterns to a list of matching files. -However, such file generation is in general not available on Windows. -The input file names tend to include scan numbers which are useful -for selecting desired data, yet even with Unix shells it is -difficult to match a range of scan numbers -(`z-shell `_ being a notable exception). - -.. _my-findexamples: - -matching input files -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -The :program:`pdfgetx3` program includes a built-in function for finding -a set of input files. The command line arguments are normally taken as -input file names. However, if the :option:`-f, --find <-f>` option is -present, the arguments are understood as patterns and the program looks -for files that match ALL of them. Another option -:option:`-l, --list <-l>` makes pdfgetx3 print out the matching files -without any other action, which can be used to verify if the patterns -match intended files. - -We will try out this file search on platinum example files. Open a -terminal and navigate to the :file:`Pt` directory. There should be a -:file:`series` subdirectory with 6 chi files indexed from 903 to 908. -At first, let's stay in the :file:`Pt` directory and run the following -command :: - - $ pdfgetx3 --list --find - - Pt_bulk-00055-pdfgetx2.gr - Pt_bulk-00055-pdfgetx3.gr - Pt_bulk-00055.chi - Pt_bulk-00055.gr - empty_capillary-00032.chi - pdfgetx3.cfg - plotpdfcomparison.py - -Without any patterns the file search matches all files in the current -directory. Now let's try to add name patterns. There are few special -patterns, for example ``^`` matches at the beginning of the filename, -``$`` at the end and ```` matches a range of integer values from -*N* to *M*. The patterns containing ``^$<>`` need to be quoted as -these characters have special meaning in the shell. Here are some -examples how it works. - -Filenames containing "y":: - - $ pdfgetx3 --list --find y - empty_capillary-00032.chi - plotpdfcomparison.py - -Filenames that containing both "y" and "chi", here we use the -options :option:`!--list` and :option:`!--find` in an abbreviated -form :option:`!-l` and :option:`!-f`:: - - $ pdfgetx3 -lf y chi - empty_capillary-00032.chi - -Filenames that start with "e":: - - $ pdfgetx3 --list --find "^e" - empty_capillary-00032.chi - -Filenames that contain *character* "2":: - - $ pdfgetx3 --list --find 2 - Pt_bulk-00055-pdfgetx2.gr - empty_capillary-00032.chi - -Filenames that contain *numeric value* "2":: - - $ pdfgetx3 -lf "<2>" - Pt_bulk-00055-pdfgetx2.gr - - -data search path -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -PDFgetX3 can be run with the :option:`-d, --datapath <-d>` option, which -tells it to search additional directories for input data files. The -:option:`!-d` option can be used several times to search more -directories. The data directories can be also defined with the -:envvar:`PDFGETX3PATH` environment variable. Here we will use -the :option:`!-d` option to match files in the :file:`series` -subdirectory. The search stops at the first directory that contains -any match, therefore :: - - $ pdfgetx3 --datapath=series --list --find Pt chi - Pt_bulk-00055.chi - -matches just one file in the current working directory, but :: - - $ pdfgetx3 --datapath=series --list --find Pt "<906->.chi" - series/Pt_bulk_ramp03-00906.chi - series/Pt_bulk_ramp03-00907.chi - series/Pt_bulk_ramp03-00908.chi - -finds 3 files, because only the :file:`series` folder contains -file names with "Pt" and a number "906" or higher followed -by ".chi". - - -output file names -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -By default the output files are saved in the current directory. The -output path, can be changed with the :option:`-o, --output <-o>` option. -The :option:`!-o` recognizes several aliases that are replaced with -parts of the input file name, for example, "@b" expands to an -extension-stripped base name. In similar faction, "@o" is replaced -with the output type extension. Thus to generate PDFs for all files -in the :file:`series` directory and save them in the -:file:`series-gr` subfolder do :: - - $ pdfgetx3 -d series --find "<900-910>.chi" --output=series-gr/@b.@o - -The extension ".@o" is automatic when not included anywhere in the -output file name. Thus to process the Pt series at |Qmax| = 18 |Ainv| -while saving the results in the same folder, but with "qmax18" in their -filename can be done with:: - - $ pdfgetx3 -d series --find "<900-910>.chi" --qmax=18 -o series-gr/@b_qmax18 - -The :file:`series-gr` directory should now contain 12 gr files, -6 of them processed at the |Qmax| = 27 |Ainv| from the configuration -file and 6 other at |Qmax| = 18 |Ainv|. - - -.. index:: tuneconfig (example) -.. _my-tuneconfig: - -Interactive tuning of parameters ------------------------------------------------------------------------- - -One of the most powerful features of PDFgetX3 is the ability to tune -PDF processing parameters in an interactive mode and immediately -visualize their effect on the results. To demonstrate this feature, -navigate to the :file:`examples/Ni` directory in the shell and process -the nickel PDF while plotting the |FQ| and |Gr| curves. -Because of plotting the program will open an interactive IPython -session. The tuning mode can be then entered by calling the -:py:func:`.tuneconfig` -function from the IPython environment :: - - $ pdfgetx3 --plot=fq,gr ni300mesh_300k_nor_1-5.chi - ... - In [1]: tuneconfig() - -The -:py:func:`!tuneconfig` -function will by default add a second set of live lines -for the plotted curves and open a GUI dialog with sliders for the -tunable process parameters. Changing any slider would immediately -recalculate the PDF and update live lines in the plot. - -.. image:: images/tunenickelfqgr.png - -The *constant data scale* check-box rescales the result curves to a -constant maximum value. This is useful for assessing if a parameter -change produces different curve shape or if it just rescales the -results. The tunable parameters are described in the -:ref:`PDF parameters section `. -Only the active parameters are displayed in the tuneconfig GUI, -thus there would be no slider for the :confval:`bgscale` parameter -if PDF has been processed without any background data. - -By default the -:py:func:`!tuneconfig` -function displays the same curves as -specified by the :option:`--plot <-p>` option, however it can be -configured to show arbitrary intermediate results or even visualize -selected steps in the PDF processing. We shall demonstrate this by -showing a live-plot of the polynomial correction together with the final -PDF. At first, we shall use the :py:meth:`!describe` method of the -:py:func:`.pdfgetter` object to print out the chain of -transformations involved in the PDF processing and obtain a reference to -the transformation object *t4* that applies the polynomial correction. -The transformation object can be then included in a list of plot -identifiers that are passed to the :py:func:`!tuneconfig` function :: - - $ pdfgetx3 --plot=fq,gr ni300mesh_300k_nor_1-5.chi - ... - Use "%pdfgetx3" for a fresh run without exiting IPython. - - In [1]: clf() - In [2]: pdfgetter.describe() - 0 TransformTwoThetaToQA - convert x data from twotheta to Q in 1/A - 1 TransformQGridRegular - Remove the data outside the (qmin, qmaxinst) range - 2 TransformBackground - subtract background intensity - 3 TransformXrayASFnormChris - scale and normalize intensities by x-ray scattering factors - 4 TransformSQnormRPoly - Normalize S(Q) by fitting a polynomial - 5 TransformSQToFQ - Convert S(Q) to F(Q). - 6 TransformFQgrid - Resample F(Q) to a regular grid suitable for FFT - 7 TransformFQToGr - Convert F(Q) to G(r). - In [3]: t4 = pdfgetter.getTransformation(4) - In [4]: tuneconfig([t4, 'gr']) - -The :py:func:`!clf` function used above -clears the figure to remove the initial -|FQ| line from the first panel. Overall, this should display the -following plot: - -.. image:: images/tunenickelt4gr.png - -The tuning can be finished by clicking the ``Done`` button or closing the -tuneconfig GUI window. The parameter values can be thereafter adjusted -to a rounded values by setting an attribute of the :interactvar:`config` -object, for example:: - - In [5]: config.bgscale = 1.5 - -Finally, to save the new results, we shall first confirm -:confval:`outputtypes` have been correctly set and then use the -:py:func:`.processFiles` function to redo the calculations, plots and -data output for the updated configuration. Note that the -:py:func:`!processFiles` function accepts keyword arguments for -configuration parameters. This is used at line ``In [8]`` to -turn on the :confval:`force` flag and is in effect a shortcut -for an extra ``config.force = True`` statement. :: - - In [6]: config.outputtypes - Out[6]: ['gr'] - In [7]: processFiles() - WARNING:ni300mesh_300k_nor_1-5.gr already exists. - WARNING:Use "--force=yes" or "--force=once" to overwrite. - In [8]: processFiles(force=True) - -:file:`ni300mesh_300k_nor_1-5.gr` was successfully saved at an -updated configuration for there were no warnings after the last call. diff --git a/static_root/doc/pdfgetx3/_static/ajax-loader.gif b/static_root/doc/pdfgetx3/_static/ajax-loader.gif deleted file mode 100644 index 61faf8ca..00000000 Binary files a/static_root/doc/pdfgetx3/_static/ajax-loader.gif and /dev/null differ diff --git a/static_root/doc/pdfgetx3/_static/basic.css b/static_root/doc/pdfgetx3/_static/basic.css deleted file mode 100644 index 3c7223b1..00000000 --- a/static_root/doc/pdfgetx3/_static/basic.css +++ /dev/null @@ -1,643 +0,0 @@ -/* - * basic.css - * ~~~~~~~~~ - * - * Sphinx stylesheet -- basic theme. - * - * :copyright: Copyright 2007-2017 by the Sphinx team, see AUTHORS. - * :license: BSD, see LICENSE for details. - * - */ - -/* -- main layout ----------------------------------------------------------- */ - -div.clearer { - clear: both; 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- background-color: #f2f2f2; - font-weight: normal; - color: #20435c; - border-bottom: 1px solid #ccc; - margin: 20px -20px 10px -20px; - padding: 3px 0 3px 10px; -} - -div.body h1 { margin-top: 0; font-size: 200%; } -div.body h2 { font-size: 160%; } -div.body h3 { font-size: 140%; } -div.body h4 { font-size: 120%; } -div.body h5 { font-size: 110%; } -div.body h6 { font-size: 100%; } - -a.headerlink { - color: #c60f0f; - font-size: 0.8em; - padding: 0 4px 0 4px; - text-decoration: none; -} - -a.headerlink:hover { - background-color: #c60f0f; - color: white; -} - -div.body p, div.body dd, div.body li, div.body blockquote { - text-align: justify; - line-height: 130%; -} - -div.admonition p.admonition-title + p { - display: inline; -} - -div.admonition p { - margin-bottom: 5px; -} - -div.admonition pre { - margin-bottom: 5px; -} - -div.admonition ul, div.admonition ol { - margin-bottom: 5px; -} - -div.note { - background-color: #eee; - border: 1px solid #ccc; -} - -div.seealso { - background-color: #ffc; - border: 1px solid #ff6; -} - -div.topic { - background-color: #eee; -} - -div.warning { - background-color: #ffe4e4; - border: 1px solid #f66; -} - -p.admonition-title { - display: inline; -} - -p.admonition-title:after { - content: ":"; -} - -pre { - padding: 5px; - background-color: #eeffcc; - color: #333333; - line-height: 120%; - border: 1px solid #ac9; - border-left: none; - border-right: none; -} - -code { - background-color: #ecf0f3; - padding: 0 1px 0 1px; - font-size: 0.95em; -} - -th { - background-color: #ede; -} - -.warning code { - background: #efc2c2; -} - -.note code { - background: #d6d6d6; -} - -.viewcode-back { - font-family: sans-serif; -} - -div.viewcode-block:target { - background-color: #f4debf; - border-top: 1px solid #ac9; - border-bottom: 1px solid #ac9; -} - -div.code-block-caption { - color: #efefef; - background-color: #1c4e63; -} \ No newline at end of file diff --git a/static_root/doc/pdfgetx3/_static/comment-bright.png b/static_root/doc/pdfgetx3/_static/comment-bright.png deleted file mode 100644 index 15e27edb..00000000 Binary files a/static_root/doc/pdfgetx3/_static/comment-bright.png and /dev/null differ diff --git a/static_root/doc/pdfgetx3/_static/comment-close.png b/static_root/doc/pdfgetx3/_static/comment-close.png deleted file mode 100644 index 4d91bcf5..00000000 Binary files a/static_root/doc/pdfgetx3/_static/comment-close.png and /dev/null differ diff --git a/static_root/doc/pdfgetx3/_static/comment.png b/static_root/doc/pdfgetx3/_static/comment.png deleted file mode 100644 index dfbc0cbd..00000000 Binary files a/static_root/doc/pdfgetx3/_static/comment.png and /dev/null differ diff --git a/static_root/doc/pdfgetx3/_static/doctools.js b/static_root/doc/pdfgetx3/_static/doctools.js deleted file mode 100644 index 24992e64..00000000 --- a/static_root/doc/pdfgetx3/_static/doctools.js +++ /dev/null @@ -1,311 +0,0 @@ -/* - * doctools.js - * ~~~~~~~~~~~ - * - * Sphinx JavaScript utilities for all documentation. - * - * :copyright: Copyright 2007-2017 by the Sphinx team, see AUTHORS. - * :license: BSD, see LICENSE for details. - * - */ - -/** - * select a different prefix for underscore - */ -$u = _.noConflict(); - -/** - * make the code below compatible with browsers without - * an installed firebug like debugger -if (!window.console || !console.firebug) { - var names = ["log", "debug", "info", "warn", "error", "assert", "dir", - "dirxml", "group", "groupEnd", "time", "timeEnd", "count", "trace", - "profile", "profileEnd"]; - window.console = {}; - for (var i = 0; i < names.length; ++i) - window.console[names[i]] = function() {}; -} - */ - -/** - * small helper function to urldecode strings - */ -jQuery.urldecode = function(x) { - return decodeURIComponent(x).replace(/\+/g, ' '); -}; - -/** - * small helper function to urlencode strings - */ -jQuery.urlencode = encodeURIComponent; - -/** - * This function returns the parsed url parameters of the - * current request. Multiple values per key are supported, - * it will always return arrays of strings for the value parts. - */ -jQuery.getQueryParameters = function(s) { - if (typeof s === 'undefined') - s = document.location.search; - var parts = s.substr(s.indexOf('?') + 1).split('&'); - var result = {}; - for (var i = 0; i < parts.length; i++) { - var tmp = parts[i].split('=', 2); - var key = jQuery.urldecode(tmp[0]); - var value = jQuery.urldecode(tmp[1]); - if (key in result) - result[key].push(value); - else - result[key] = [value]; - } - return result; -}; - -/** - * highlight a given string on a jquery object by wrapping it in - * span elements with the given class name. - */ -jQuery.fn.highlightText = function(text, className) { - function highlight(node, addItems) { - if (node.nodeType === 3) { - var val = node.nodeValue; - var pos = val.toLowerCase().indexOf(text); - if (pos >= 0 && !jQuery(node.parentNode).hasClass(className)) { - var span; - var isInSVG = jQuery(node).closest("body, svg, foreignObject").is("svg"); - if (isInSVG) { - span = document.createElementNS("http://www.w3.org/2000/svg", "tspan"); - } else { - span = document.createElement("span"); - span.className = className; - } - span.appendChild(document.createTextNode(val.substr(pos, text.length))); - node.parentNode.insertBefore(span, node.parentNode.insertBefore( - document.createTextNode(val.substr(pos + text.length)), - node.nextSibling)); - node.nodeValue = val.substr(0, pos); - if (isInSVG) { - var bbox = span.getBBox(); - var rect = document.createElementNS("http://www.w3.org/2000/svg", "rect"); - rect.x.baseVal.value = bbox.x; - rect.y.baseVal.value = bbox.y; - rect.width.baseVal.value = bbox.width; - rect.height.baseVal.value = bbox.height; - rect.setAttribute('class', className); - var parentOfText = node.parentNode.parentNode; - addItems.push({ - "parent": node.parentNode, - "target": rect}); - } - } - } - else if (!jQuery(node).is("button, select, textarea")) { - jQuery.each(node.childNodes, function() { - highlight(this, addItems); - }); - } - } - var addItems = []; - var result = this.each(function() { - highlight(this, addItems); - }); - for (var i = 0; i < addItems.length; ++i) { - jQuery(addItems[i].parent).before(addItems[i].target); - } - return result; -}; - -/* - * backward compatibility for jQuery.browser - * This will be supported until firefox bug is fixed. - */ -if (!jQuery.browser) { - jQuery.uaMatch = function(ua) { - ua = ua.toLowerCase(); - - var match = /(chrome)[ \/]([\w.]+)/.exec(ua) || - /(webkit)[ \/]([\w.]+)/.exec(ua) || - /(opera)(?:.*version|)[ \/]([\w.]+)/.exec(ua) || - /(msie) ([\w.]+)/.exec(ua) || - ua.indexOf("compatible") < 0 && /(mozilla)(?:.*? rv:([\w.]+)|)/.exec(ua) || - []; - - return { - browser: match[ 1 ] || "", - version: match[ 2 ] || "0" - }; - }; - jQuery.browser = {}; - jQuery.browser[jQuery.uaMatch(navigator.userAgent).browser] = true; -} - -/** - * Small JavaScript module for the documentation. - */ -var Documentation = { - - init : function() { - this.fixFirefoxAnchorBug(); - this.highlightSearchWords(); - this.initIndexTable(); - - }, - - /** - * i18n support - */ - TRANSLATIONS : {}, - PLURAL_EXPR : function(n) { return n === 1 ? 0 : 1; }, - LOCALE : 'unknown', - - // gettext and ngettext don't access this so that the functions - // can safely bound to a different name (_ = Documentation.gettext) - gettext : function(string) { - var translated = Documentation.TRANSLATIONS[string]; - if (typeof translated === 'undefined') - return string; - return (typeof translated === 'string') ? translated : translated[0]; - }, - - ngettext : function(singular, plural, n) { - var translated = Documentation.TRANSLATIONS[singular]; - if (typeof translated === 'undefined') - return (n == 1) ? singular : plural; - return translated[Documentation.PLURALEXPR(n)]; - }, - - addTranslations : function(catalog) { - for (var key in catalog.messages) - this.TRANSLATIONS[key] = catalog.messages[key]; - this.PLURAL_EXPR = new Function('n', 'return +(' + catalog.plural_expr + ')'); - this.LOCALE = catalog.locale; - }, - - /** - * add context elements like header anchor links - */ - addContextElements : function() { - $('div[id] > :header:first').each(function() { - $('\u00B6'). - attr('href', '#' + this.id). - attr('title', _('Permalink to this headline')). - appendTo(this); - }); - $('dt[id]').each(function() { - $('\u00B6'). - attr('href', '#' + this.id). - attr('title', _('Permalink to this definition')). - appendTo(this); - }); - }, - - /** - * workaround a firefox stupidity - * see: https://bugzilla.mozilla.org/show_bug.cgi?id=645075 - */ - fixFirefoxAnchorBug : function() { - if (document.location.hash) - window.setTimeout(function() { - document.location.href += ''; - }, 10); - }, - - /** - * highlight the search words provided in the url in the text - */ - highlightSearchWords : function() { - var params = $.getQueryParameters(); - var terms = (params.highlight) ? params.highlight[0].split(/\s+/) : []; - if (terms.length) { - var body = $('div.body'); - if (!body.length) { - body = $('body'); - } - window.setTimeout(function() { - $.each(terms, function() { - body.highlightText(this.toLowerCase(), 'highlighted'); - }); - }, 10); - $('

    ' + _('Hide Search Matches') + '

    ') - .appendTo($('#searchbox')); - } - }, - - /** - * init the domain index toggle buttons - */ - initIndexTable : function() { - var togglers = $('img.toggler').click(function() { - var src = $(this).attr('src'); - var idnum = $(this).attr('id').substr(7); - $('tr.cg-' + idnum).toggle(); - if (src.substr(-9) === 'minus.png') - $(this).attr('src', src.substr(0, src.length-9) + 'plus.png'); - else - $(this).attr('src', src.substr(0, src.length-8) + 'minus.png'); - }).css('display', ''); - if (DOCUMENTATION_OPTIONS.COLLAPSE_INDEX) { - togglers.click(); - } - }, - - /** - * helper function to hide the search marks again - */ - hideSearchWords : function() { - $('#searchbox .highlight-link').fadeOut(300); - $('span.highlighted').removeClass('highlighted'); - }, - - /** - * make the url absolute - */ - makeURL : function(relativeURL) { - return DOCUMENTATION_OPTIONS.URL_ROOT + '/' + relativeURL; - }, - - /** - * get the current relative url - */ - getCurrentURL : function() { - var path = document.location.pathname; - var parts = path.split(/\//); - $.each(DOCUMENTATION_OPTIONS.URL_ROOT.split(/\//), function() { - if (this === '..') - parts.pop(); - }); - var url = parts.join('/'); - return path.substring(url.lastIndexOf('/') + 1, path.length - 1); - }, - - initOnKeyListeners: function() { - $(document).keyup(function(event) { - var activeElementType = document.activeElement.tagName; - // don't navigate when in search box or textarea - if (activeElementType !== 'TEXTAREA' && activeElementType !== 'INPUT' && activeElementType !== 'SELECT') { - switch (event.keyCode) { - case 37: // left - var prevHref = $('link[rel="prev"]').prop('href'); - if (prevHref) { - window.location.href = prevHref; - return false; - } - case 39: // right - var nextHref = $('link[rel="next"]').prop('href'); - if (nextHref) { - window.location.href = nextHref; - return false; - } - } - } - }); - } -}; - -// quick alias for translations -_ = Documentation.gettext; - -$(document).ready(function() { - Documentation.init(); -}); \ No newline at end of file diff --git a/static_root/doc/pdfgetx3/_static/down-pressed.png b/static_root/doc/pdfgetx3/_static/down-pressed.png deleted file mode 100644 index 5756c8ca..00000000 Binary files a/static_root/doc/pdfgetx3/_static/down-pressed.png and /dev/null differ diff --git a/static_root/doc/pdfgetx3/_static/down.png b/static_root/doc/pdfgetx3/_static/down.png deleted file mode 100644 index 1b3bdad2..00000000 Binary files a/static_root/doc/pdfgetx3/_static/down.png and /dev/null differ diff --git a/static_root/doc/pdfgetx3/_static/file.png b/static_root/doc/pdfgetx3/_static/file.png deleted file mode 100644 index a858a410..00000000 Binary files a/static_root/doc/pdfgetx3/_static/file.png and /dev/null differ diff --git a/static_root/doc/pdfgetx3/_static/jquery-3.1.0.js b/static_root/doc/pdfgetx3/_static/jquery-3.1.0.js deleted file mode 100644 index f2fc2747..00000000 --- a/static_root/doc/pdfgetx3/_static/jquery-3.1.0.js +++ /dev/null @@ -1,10074 +0,0 @@ -/*eslint-disable no-unused-vars*/ -/*! - * jQuery JavaScript Library v3.1.0 - * https://jquery.com/ - * - * Includes Sizzle.js - * https://sizzlejs.com/ - * - * Copyright jQuery Foundation and other contributors - * Released under the MIT license - * https://jquery.org/license - * - * Date: 2016-07-07T21:44Z - */ -( function( global, factory ) { - - "use strict"; - - if ( typeof module === "object" && typeof module.exports === "object" ) { - - // For CommonJS and CommonJS-like environments where a proper `window` - // is present, execute the factory and get jQuery. - // For environments that do not have a `window` with a `document` - // (such as Node.js), expose a factory as module.exports. - // This accentuates the need for the creation of a real `window`. - // e.g. var jQuery = require("jquery")(window); - // See ticket #14549 for more info. - module.exports = global.document ? - factory( global, true ) : - function( w ) { - if ( !w.document ) { - throw new Error( "jQuery requires a window with a document" ); - } - return factory( w ); - }; - } else { - factory( global ); - } - -// Pass this if window is not defined yet -} )( typeof window !== "undefined" ? window : this, function( window, noGlobal ) { - -// Edge <= 12 - 13+, Firefox <=18 - 45+, IE 10 - 11, Safari 5.1 - 9+, iOS 6 - 9.1 -// throw exceptions when non-strict code (e.g., ASP.NET 4.5) accesses strict mode -// arguments.callee.caller (trac-13335). But as of jQuery 3.0 (2016), strict mode should be common -// enough that all such attempts are guarded in a try block. -"use strict"; - -var arr = []; - -var document = window.document; - -var getProto = Object.getPrototypeOf; - -var slice = arr.slice; - -var concat = arr.concat; - -var push = arr.push; - -var indexOf = arr.indexOf; - -var class2type = {}; - -var toString = class2type.toString; - -var hasOwn = class2type.hasOwnProperty; - -var fnToString = hasOwn.toString; - -var ObjectFunctionString = fnToString.call( Object ); - -var support = {}; - - - - function DOMEval( code, doc ) { - doc = doc || document; - - var script = doc.createElement( "script" ); - - script.text = code; - doc.head.appendChild( script ).parentNode.removeChild( script ); - } -/* global Symbol */ -// Defining this global in .eslintrc would create a danger of using the global -// unguarded in another place, it seems safer to define global only for this module - - - -var - version = "3.1.0", - - // Define a local copy of jQuery - jQuery = function( selector, context ) { - - // The jQuery object is actually just the init constructor 'enhanced' - // Need init if jQuery is called (just allow error to be thrown if not included) - return new jQuery.fn.init( selector, context ); - }, - - // Support: Android <=4.0 only - // Make sure we trim BOM and NBSP - rtrim = /^[\s\uFEFF\xA0]+|[\s\uFEFF\xA0]+$/g, - - // Matches dashed string for camelizing - rmsPrefix = /^-ms-/, - rdashAlpha = /-([a-z])/g, - - // Used by jQuery.camelCase as callback to replace() - fcamelCase = function( all, letter ) { - return letter.toUpperCase(); - }; - -jQuery.fn = jQuery.prototype = { - - // The current version of jQuery being used - jquery: version, - - constructor: jQuery, - - // The default length of a jQuery object is 0 - length: 0, - - toArray: function() { - return slice.call( this ); - }, - - // Get the Nth element in the matched element set OR - // Get the whole matched element set as a clean array - get: function( num ) { - return num != null ? - - // Return just the one element from the set - ( num < 0 ? this[ num + this.length ] : this[ num ] ) : - - // Return all the elements in a clean array - slice.call( this ); - }, - - // Take an array of elements and push it onto the stack - // (returning the new matched element set) - pushStack: function( elems ) { - - // Build a new jQuery matched element set - var ret = jQuery.merge( this.constructor(), elems ); - - // Add the old object onto the stack (as a reference) - ret.prevObject = this; - - // Return the newly-formed element set - return ret; - }, - - // Execute a callback for every element in the matched set. - each: function( callback ) { - return jQuery.each( this, callback ); - }, - - map: function( callback ) { - return this.pushStack( jQuery.map( this, function( elem, i ) { - return callback.call( elem, i, elem ); - } ) ); - }, - - slice: function() { - return this.pushStack( slice.apply( this, arguments ) ); - }, - - first: function() { - return this.eq( 0 ); - }, - - last: function() { - return this.eq( -1 ); - }, - - eq: function( i ) { - var len = this.length, - j = +i + ( i < 0 ? len : 0 ); - return this.pushStack( j >= 0 && j < len ? [ this[ j ] ] : [] ); - }, - - end: function() { - return this.prevObject || this.constructor(); - }, - - // For internal use only. - // Behaves like an Array's method, not like a jQuery method. - push: push, - sort: arr.sort, - splice: arr.splice -}; - -jQuery.extend = jQuery.fn.extend = function() { - var options, name, src, copy, copyIsArray, clone, - target = arguments[ 0 ] || {}, - i = 1, - length = arguments.length, - deep = false; - - // Handle a deep copy situation - if ( typeof target === "boolean" ) { - deep = target; - - // Skip the boolean and the target - target = arguments[ i ] || {}; - i++; - } - - // Handle case when target is a string or something (possible in deep copy) - if ( typeof target !== "object" && !jQuery.isFunction( target ) ) { - target = {}; - } - - // Extend jQuery itself if only one argument is passed - if ( i === length ) { - target = this; - i--; - } - - for ( ; i < length; i++ ) { - - // Only deal with non-null/undefined values - if ( ( options = arguments[ i ] ) != null ) { - - // Extend the base object - for ( name in options ) { - src = target[ name ]; - copy = options[ name ]; - - // Prevent never-ending loop - if ( target === copy ) { - continue; - } - - // Recurse if we're merging plain objects or arrays - if ( deep && copy && ( jQuery.isPlainObject( copy ) || - ( copyIsArray = jQuery.isArray( copy ) ) ) ) { - - if ( copyIsArray ) { - copyIsArray = false; - clone = src && jQuery.isArray( src ) ? src : []; - - } else { - clone = src && jQuery.isPlainObject( src ) ? src : {}; - } - - // Never move original objects, clone them - target[ name ] = jQuery.extend( deep, clone, copy ); - - // Don't bring in undefined values - } else if ( copy !== undefined ) { - target[ name ] = copy; - } - } - } - } - - // Return the modified object - return target; -}; - -jQuery.extend( { - - // Unique for each copy of jQuery on the page - expando: "jQuery" + ( version + Math.random() ).replace( /\D/g, "" ), - - // Assume jQuery is ready without the ready module - isReady: true, - - error: function( msg ) { - throw new Error( msg ); - }, - - noop: function() {}, - - isFunction: function( obj ) { - return jQuery.type( obj ) === "function"; - }, - - isArray: Array.isArray, - - isWindow: function( obj ) { - return obj != null && obj === obj.window; - }, - - isNumeric: function( obj ) { - - // As of jQuery 3.0, isNumeric is limited to - // strings and numbers (primitives or objects) - // that can be coerced to finite numbers (gh-2662) - var type = jQuery.type( obj ); - return ( type === "number" || type === "string" ) && - - // parseFloat NaNs numeric-cast false positives ("") - // ...but misinterprets leading-number strings, particularly hex literals ("0x...") - // subtraction forces infinities to NaN - !isNaN( obj - parseFloat( obj ) ); - }, - - isPlainObject: function( obj ) { - var proto, Ctor; - - // Detect obvious negatives - // Use toString instead of jQuery.type to catch host objects - if ( !obj || toString.call( obj ) !== "[object Object]" ) { - return false; - } - - proto = getProto( obj ); - - // Objects with no prototype (e.g., `Object.create( null )`) are plain - if ( !proto ) { - return true; - } - - // Objects with prototype are plain iff they were constructed by a global Object function - Ctor = hasOwn.call( proto, "constructor" ) && proto.constructor; - return typeof Ctor === "function" && fnToString.call( Ctor ) === ObjectFunctionString; - }, - - isEmptyObject: function( obj ) { - - /* eslint-disable no-unused-vars */ - // See https://github.com/eslint/eslint/issues/6125 - var name; - - for ( name in obj ) { - return false; - } - return true; - }, - - type: function( obj ) { - if ( obj == null ) { - return obj + ""; - } - - // Support: Android <=2.3 only (functionish RegExp) - return typeof obj === "object" || typeof obj === "function" ? - class2type[ toString.call( obj ) ] || "object" : - typeof obj; - }, - - // Evaluates a script in a global context - globalEval: function( code ) { - DOMEval( code ); - }, - - // Convert dashed to camelCase; used by the css and data modules - // Support: IE <=9 - 11, Edge 12 - 13 - // Microsoft forgot to hump their vendor prefix (#9572) - camelCase: function( string ) { - return string.replace( rmsPrefix, "ms-" ).replace( rdashAlpha, fcamelCase ); - }, - - nodeName: function( elem, name ) { - return elem.nodeName && elem.nodeName.toLowerCase() === name.toLowerCase(); - }, - - each: function( obj, callback ) { - var length, i = 0; - - if ( isArrayLike( obj ) ) { - length = obj.length; - for ( ; i < length; i++ ) { - if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) { - break; - } - } - } else { - for ( i in obj ) { - if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) { - break; - } - } - } - - return obj; - }, - - // Support: Android <=4.0 only - trim: function( text ) { - return text == null ? - "" : - ( text + "" ).replace( rtrim, "" ); - }, - - // results is for internal usage only - makeArray: function( arr, results ) { - var ret = results || []; - - if ( arr != null ) { - if ( isArrayLike( Object( arr ) ) ) { - jQuery.merge( ret, - typeof arr === "string" ? - [ arr ] : arr - ); - } else { - push.call( ret, arr ); - } - } - - return ret; - }, - - inArray: function( elem, arr, i ) { - return arr == null ? -1 : indexOf.call( arr, elem, i ); - }, - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - merge: function( first, second ) { - var len = +second.length, - j = 0, - i = first.length; - - for ( ; j < len; j++ ) { - first[ i++ ] = second[ j ]; - } - - first.length = i; - - return first; - }, - - grep: function( elems, callback, invert ) { - var callbackInverse, - matches = [], - i = 0, - length = elems.length, - callbackExpect = !invert; - - // Go through the array, only saving the items - // that pass the validator function - for ( ; i < length; i++ ) { - callbackInverse = !callback( elems[ i ], i ); - if ( callbackInverse !== callbackExpect ) { - matches.push( elems[ i ] ); - } - } - - return matches; - }, - - // arg is for internal usage only - map: function( elems, callback, arg ) { - var length, value, - i = 0, - ret = []; - - // Go through the array, translating each of the items to their new values - if ( isArrayLike( elems ) ) { - length = elems.length; - for ( ; i < length; i++ ) { - value = callback( elems[ i ], i, arg ); - - if ( value != null ) { - ret.push( value ); - } - } - - // Go through every key on the object, - } else { - for ( i in elems ) { - value = callback( elems[ i ], i, arg ); - - if ( value != null ) { - ret.push( value ); - } - } - } - - // Flatten any nested arrays - return concat.apply( [], ret ); - }, - - // A global GUID counter for objects - guid: 1, - - // Bind a function to a context, optionally partially applying any - // arguments. - proxy: function( fn, context ) { - var tmp, args, proxy; - - if ( typeof context === "string" ) { - tmp = fn[ context ]; - context = fn; - fn = tmp; - } - - // Quick check to determine if target is callable, in the spec - // this throws a TypeError, but we will just return undefined. - if ( !jQuery.isFunction( fn ) ) { - return undefined; - } - - // Simulated bind - args = slice.call( arguments, 2 ); - proxy = function() { - return fn.apply( context || this, args.concat( slice.call( arguments ) ) ); - }; - - // Set the guid of unique handler to the same of original handler, so it can be removed - proxy.guid = fn.guid = fn.guid || jQuery.guid++; - - return proxy; - }, - - now: Date.now, - - // jQuery.support is not used in Core but other projects attach their - // properties to it so it needs to exist. - support: support -} ); - -if ( typeof Symbol === "function" ) { - jQuery.fn[ Symbol.iterator ] = arr[ Symbol.iterator ]; -} - -// Populate the class2type map -jQuery.each( "Boolean Number String Function Array Date RegExp Object Error Symbol".split( " " ), -function( i, name ) { - class2type[ "[object " + name + "]" ] = name.toLowerCase(); -} ); - -function isArrayLike( obj ) { - - // Support: real iOS 8.2 only (not reproducible in simulator) - // `in` check used to prevent JIT error (gh-2145) - // hasOwn isn't used here due to false negatives - // regarding Nodelist length in IE - var length = !!obj && "length" in obj && obj.length, - type = jQuery.type( obj ); - - if ( type === "function" || jQuery.isWindow( obj ) ) { - return false; - } - - return type === "array" || length === 0 || - typeof length === "number" && length > 0 && ( length - 1 ) in obj; -} -var Sizzle = -/*! - * Sizzle CSS Selector Engine v2.3.0 - * https://sizzlejs.com/ - * - * Copyright jQuery Foundation and other contributors - * Released under the MIT license - * http://jquery.org/license - * - * Date: 2016-01-04 - */ -(function( window ) { - -var i, - support, - Expr, - getText, - isXML, - tokenize, - compile, - select, - outermostContext, - sortInput, - hasDuplicate, - - // Local document vars - setDocument, - document, - docElem, - documentIsHTML, - rbuggyQSA, - rbuggyMatches, - matches, - contains, - - // Instance-specific data - expando = "sizzle" + 1 * new Date(), - preferredDoc = window.document, - dirruns = 0, - done = 0, - classCache = createCache(), - tokenCache = createCache(), - compilerCache = createCache(), - sortOrder = function( a, b ) { - if ( a === b ) { - hasDuplicate = true; - } - return 0; - }, - - // Instance methods - hasOwn = ({}).hasOwnProperty, - arr = [], - pop = arr.pop, - push_native = arr.push, - push = arr.push, - slice = arr.slice, - // Use a stripped-down indexOf as it's faster than native - // https://jsperf.com/thor-indexof-vs-for/5 - indexOf = function( list, elem ) { - var i = 0, - len = list.length; - for ( ; i < len; i++ ) { - if ( list[i] === elem ) { - return i; - } - } - return -1; - }, - - booleans = "checked|selected|async|autofocus|autoplay|controls|defer|disabled|hidden|ismap|loop|multiple|open|readonly|required|scoped", - - // Regular expressions - - // http://www.w3.org/TR/css3-selectors/#whitespace - whitespace = "[\\x20\\t\\r\\n\\f]", - - // http://www.w3.org/TR/CSS21/syndata.html#value-def-identifier - identifier = "(?:\\\\.|[\\w-]|[^\0-\\xa0])+", - - // Attribute selectors: http://www.w3.org/TR/selectors/#attribute-selectors - attributes = "\\[" + whitespace + "*(" + identifier + ")(?:" + whitespace + - // Operator (capture 2) - "*([*^$|!~]?=)" + whitespace + - // "Attribute values must be CSS identifiers [capture 5] or strings [capture 3 or capture 4]" - "*(?:'((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\"|(" + identifier + "))|)" + whitespace + - "*\\]", - - pseudos = ":(" + identifier + ")(?:\\((" + - // To reduce the number of selectors needing tokenize in the preFilter, prefer arguments: - // 1. quoted (capture 3; capture 4 or capture 5) - "('((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\")|" + - // 2. simple (capture 6) - "((?:\\\\.|[^\\\\()[\\]]|" + attributes + ")*)|" + - // 3. anything else (capture 2) - ".*" + - ")\\)|)", - - // Leading and non-escaped trailing whitespace, capturing some non-whitespace characters preceding the latter - rwhitespace = new RegExp( whitespace + "+", "g" ), - rtrim = new RegExp( "^" + whitespace + "+|((?:^|[^\\\\])(?:\\\\.)*)" + whitespace + "+$", "g" ), - - rcomma = new RegExp( "^" + whitespace + "*," + whitespace + "*" ), - rcombinators = new RegExp( "^" + whitespace + "*([>+~]|" + whitespace + ")" + whitespace + "*" ), - - rattributeQuotes = new RegExp( "=" + whitespace + "*([^\\]'\"]*?)" + whitespace + "*\\]", "g" ), - - rpseudo = new RegExp( pseudos ), - ridentifier = new RegExp( "^" + identifier + "$" ), - - matchExpr = { - "ID": new RegExp( "^#(" + identifier + ")" ), - "CLASS": new RegExp( "^\\.(" + identifier + ")" ), - "TAG": new RegExp( "^(" + identifier + "|[*])" ), - "ATTR": new RegExp( "^" + attributes ), - "PSEUDO": new RegExp( "^" + pseudos ), - "CHILD": new RegExp( "^:(only|first|last|nth|nth-last)-(child|of-type)(?:\\(" + whitespace + - "*(even|odd|(([+-]|)(\\d*)n|)" + whitespace + "*(?:([+-]|)" + whitespace + - "*(\\d+)|))" + whitespace + "*\\)|)", "i" ), - "bool": new RegExp( "^(?:" + booleans + ")$", "i" ), - // For use in libraries implementing .is() - // We use this for POS matching in `select` - "needsContext": new RegExp( "^" + whitespace + "*[>+~]|:(even|odd|eq|gt|lt|nth|first|last)(?:\\(" + - whitespace + "*((?:-\\d)?\\d*)" + whitespace + "*\\)|)(?=[^-]|$)", "i" ) - }, - - rinputs = /^(?:input|select|textarea|button)$/i, - rheader = /^h\d$/i, - - rnative = /^[^{]+\{\s*\[native \w/, - - // Easily-parseable/retrievable ID or TAG or CLASS selectors - rquickExpr = /^(?:#([\w-]+)|(\w+)|\.([\w-]+))$/, - - rsibling = /[+~]/, - - // CSS escapes - // http://www.w3.org/TR/CSS21/syndata.html#escaped-characters - runescape = new RegExp( "\\\\([\\da-f]{1,6}" + whitespace + "?|(" + whitespace + ")|.)", "ig" ), - funescape = function( _, escaped, escapedWhitespace ) { - var high = "0x" + escaped - 0x10000; - // NaN means non-codepoint - // Support: Firefox<24 - // Workaround erroneous numeric interpretation of +"0x" - return high !== high || escapedWhitespace ? - escaped : - high < 0 ? - // BMP codepoint - String.fromCharCode( high + 0x10000 ) : - // Supplemental Plane codepoint (surrogate pair) - String.fromCharCode( high >> 10 | 0xD800, high & 0x3FF | 0xDC00 ); - }, - - // CSS string/identifier serialization - // https://drafts.csswg.org/cssom/#common-serializing-idioms - rcssescape = /([\0-\x1f\x7f]|^-?\d)|^-$|[^\x80-\uFFFF\w-]/g, - fcssescape = function( ch, asCodePoint ) { - if ( asCodePoint ) { - - // U+0000 NULL becomes U+FFFD REPLACEMENT CHARACTER - if ( ch === "\0" ) { - return "\uFFFD"; - } - - // Control characters and (dependent upon position) numbers get escaped as code points - return ch.slice( 0, -1 ) + "\\" + ch.charCodeAt( ch.length - 1 ).toString( 16 ) + " "; - } - - // Other potentially-special ASCII characters get backslash-escaped - return "\\" + ch; - }, - - // Used for iframes - // See setDocument() - // Removing the function wrapper causes a "Permission Denied" - // error in IE - unloadHandler = function() { - setDocument(); - }, - - disabledAncestor = addCombinator( - function( elem ) { - return elem.disabled === true; - }, - { dir: "parentNode", next: "legend" } - ); - -// Optimize for push.apply( _, NodeList ) -try { - push.apply( - (arr = slice.call( preferredDoc.childNodes )), - preferredDoc.childNodes - ); - // Support: Android<4.0 - // Detect silently failing push.apply - arr[ preferredDoc.childNodes.length ].nodeType; -} catch ( e ) { - push = { apply: arr.length ? - - // Leverage slice if possible - function( target, els ) { - push_native.apply( target, slice.call(els) ); - } : - - // Support: IE<9 - // Otherwise append directly - function( target, els ) { - var j = target.length, - i = 0; - // Can't trust NodeList.length - while ( (target[j++] = els[i++]) ) {} - target.length = j - 1; - } - }; -} - -function Sizzle( selector, context, results, seed ) { - var m, i, elem, nid, match, groups, newSelector, - newContext = context && context.ownerDocument, - - // nodeType defaults to 9, since context defaults to document - nodeType = context ? context.nodeType : 9; - - results = results || []; - - // Return early from calls with invalid selector or context - if ( typeof selector !== "string" || !selector || - nodeType !== 1 && nodeType !== 9 && nodeType !== 11 ) { - - return results; - } - - // Try to shortcut find operations (as opposed to filters) in HTML documents - if ( !seed ) { - - if ( ( context ? context.ownerDocument || context : preferredDoc ) !== document ) { - setDocument( context ); - } - context = context || document; - - if ( documentIsHTML ) { - - // If the selector is sufficiently simple, try using a "get*By*" DOM method - // (excepting DocumentFragment context, where the methods don't exist) - if ( nodeType !== 11 && (match = rquickExpr.exec( selector )) ) { - - // ID selector - if ( (m = match[1]) ) { - - // Document context - if ( nodeType === 9 ) { - if ( (elem = context.getElementById( m )) ) { - - // Support: IE, Opera, Webkit - // TODO: identify versions - // getElementById can match elements by name instead of ID - if ( elem.id === m ) { - results.push( elem ); - return results; - } - } else { - return results; - } - - // Element context - } else { - - // Support: IE, Opera, Webkit - // TODO: identify versions - // getElementById can match elements by name instead of ID - if ( newContext && (elem = newContext.getElementById( m )) && - contains( context, elem ) && - elem.id === m ) { - - results.push( elem ); - return results; - } - } - - // Type selector - } else if ( match[2] ) { - push.apply( results, context.getElementsByTagName( selector ) ); - return results; - - // Class selector - } else if ( (m = match[3]) && support.getElementsByClassName && - context.getElementsByClassName ) { - - push.apply( results, context.getElementsByClassName( m ) ); - return results; - } - } - - // Take advantage of querySelectorAll - if ( support.qsa && - !compilerCache[ selector + " " ] && - (!rbuggyQSA || !rbuggyQSA.test( selector )) ) { - - if ( nodeType !== 1 ) { - newContext = context; - newSelector = selector; - - // qSA looks outside Element context, which is not what we want - // Thanks to Andrew Dupont for this workaround technique - // Support: IE <=8 - // Exclude object elements - } else if ( context.nodeName.toLowerCase() !== "object" ) { - - // Capture the context ID, setting it first if necessary - if ( (nid = context.getAttribute( "id" )) ) { - nid = nid.replace( rcssescape, fcssescape ); - } else { - context.setAttribute( "id", (nid = expando) ); - } - - // Prefix every selector in the list - groups = tokenize( selector ); - i = groups.length; - while ( i-- ) { - groups[i] = "#" + nid + " " + toSelector( groups[i] ); - } - newSelector = groups.join( "," ); - - // Expand context for sibling selectors - newContext = rsibling.test( selector ) && testContext( context.parentNode ) || - context; - } - - if ( newSelector ) { - try { - push.apply( results, - newContext.querySelectorAll( newSelector ) - ); - return results; - } catch ( qsaError ) { - } finally { - if ( nid === expando ) { - context.removeAttribute( "id" ); - } - } - } - } - } - } - - // All others - return select( selector.replace( rtrim, "$1" ), context, results, seed ); -} - -/** - * Create key-value caches of limited size - * @returns {function(string, object)} Returns the Object data after storing it on itself with - * property name the (space-suffixed) string and (if the cache is larger than Expr.cacheLength) - * deleting the oldest entry - */ -function createCache() { - var keys = []; - - function cache( key, value ) { - // Use (key + " ") to avoid collision with native prototype properties (see Issue #157) - if ( keys.push( key + " " ) > Expr.cacheLength ) { - // Only keep the most recent entries - delete cache[ keys.shift() ]; - } - return (cache[ key + " " ] = value); - } - return cache; -} - -/** - * Mark a function for special use by Sizzle - * @param {Function} fn The function to mark - */ -function markFunction( fn ) { - fn[ expando ] = true; - return fn; -} - -/** - * Support testing using an element - * @param {Function} fn Passed the created element and returns a boolean result - */ -function assert( fn ) { - var el = document.createElement("fieldset"); - - try { - return !!fn( el ); - } catch (e) { - return false; - } finally { - // Remove from its parent by default - if ( el.parentNode ) { - el.parentNode.removeChild( el ); - } - // release memory in IE - el = null; - } -} - -/** - * Adds the same handler for all of the specified attrs - * @param {String} attrs Pipe-separated list of attributes - * @param {Function} handler The method that will be applied - */ -function addHandle( attrs, handler ) { - var arr = attrs.split("|"), - i = arr.length; - - while ( i-- ) { - Expr.attrHandle[ arr[i] ] = handler; - } -} - -/** - * Checks document order of two siblings - * @param {Element} a - * @param {Element} b - * @returns {Number} Returns less than 0 if a precedes b, greater than 0 if a follows b - */ -function siblingCheck( a, b ) { - var cur = b && a, - diff = cur && a.nodeType === 1 && b.nodeType === 1 && - a.sourceIndex - b.sourceIndex; - - // Use IE sourceIndex if available on both nodes - if ( diff ) { - return diff; - } - - // Check if b follows a - if ( cur ) { - while ( (cur = cur.nextSibling) ) { - if ( cur === b ) { - return -1; - } - } - } - - return a ? 1 : -1; -} - -/** - * Returns a function to use in pseudos for input types - * @param {String} type - */ -function createInputPseudo( type ) { - return function( elem ) { - var name = elem.nodeName.toLowerCase(); - return name === "input" && elem.type === type; - }; -} - -/** - * Returns a function to use in pseudos for buttons - * @param {String} type - */ -function createButtonPseudo( type ) { - return function( elem ) { - var name = elem.nodeName.toLowerCase(); - return (name === "input" || name === "button") && elem.type === type; - }; -} - -/** - * Returns a function to use in pseudos for :enabled/:disabled - * @param {Boolean} disabled true for :disabled; false for :enabled - */ -function createDisabledPseudo( disabled ) { - // Known :disabled false positives: - // IE: *[disabled]:not(button, input, select, textarea, optgroup, option, menuitem, fieldset) - // not IE: fieldset[disabled] > legend:nth-of-type(n+2) :can-disable - return function( elem ) { - - // Check form elements and option elements for explicit disabling - return "label" in elem && elem.disabled === disabled || - "form" in elem && elem.disabled === disabled || - - // Check non-disabled form elements for fieldset[disabled] ancestors - "form" in elem && elem.disabled === false && ( - // Support: IE6-11+ - // Ancestry is covered for us - elem.isDisabled === disabled || - - // Otherwise, assume any non-
    '); - } - // Prettify the comment rating. - comment.pretty_rating = comment.rating + ' point' + - (comment.rating == 1 ? '' : 's'); - // Make a class (for displaying not yet moderated comments differently) - comment.css_class = comment.displayed ? '' : ' moderate'; - // Create a div for this comment. - var context = $.extend({}, opts, comment); - var div = $(renderTemplate(commentTemplate, context)); - - // If the user has voted on this comment, highlight the correct arrow. - if (comment.vote) { - var direction = (comment.vote == 1) ? 'u' : 'd'; - div.find('#' + direction + 'v' + comment.id).hide(); - div.find('#' + direction + 'u' + comment.id).show(); - } - - if (opts.moderator || comment.text != '[deleted]') { - div.find('a.reply').show(); - if (comment.proposal_diff) - div.find('#sp' + comment.id).show(); - if (opts.moderator && !comment.displayed) - div.find('#cm' + comment.id).show(); - if (opts.moderator || (opts.username == comment.username)) - div.find('#dc' + comment.id).show(); - } - return div; - } - - /** - * A simple template renderer. Placeholders such as <%id%> are replaced - * by context['id'] with items being escaped. Placeholders such as <#id#> - * are not escaped. - */ - function renderTemplate(template, context) { - var esc = $(document.createElement('div')); - - function handle(ph, escape) { - var cur = context; - $.each(ph.split('.'), function() { - cur = cur[this]; - }); - return escape ? esc.text(cur || "").html() : cur; - } - - return template.replace(/<([%#])([\w\.]*)\1>/g, function() { - return handle(arguments[2], arguments[1] == '%' ? true : false); - }); - } - - /** Flash an error message briefly. */ - function showError(message) { - $(document.createElement('div')).attr({'class': 'popup-error'}) - .append($(document.createElement('div')) - .attr({'class': 'error-message'}).text(message)) - .appendTo('body') - .fadeIn("slow") - .delay(2000) - .fadeOut("slow"); - } - - /** Add a link the user uses to open the comments popup. */ - $.fn.comment = function() { - return this.each(function() { - var id = $(this).attr('id').substring(1); - var count = COMMENT_METADATA[id]; - var title = count + ' comment' + (count == 1 ? '' : 's'); - var image = count > 0 ? opts.commentBrightImage : opts.commentImage; - var addcls = count == 0 ? ' nocomment' : ''; - $(this) - .append( - $(document.createElement('a')).attr({ - href: '#', - 'class': 'sphinx-comment-open' + addcls, - id: 'ao' + id - }) - .append($(document.createElement('img')).attr({ - src: image, - alt: 'comment', - title: title - })) - .click(function(event) { - event.preventDefault(); - show($(this).attr('id').substring(2)); - }) - ) - .append( - $(document.createElement('a')).attr({ - href: '#', - 'class': 'sphinx-comment-close hidden', - id: 'ah' + id - }) - .append($(document.createElement('img')).attr({ - src: opts.closeCommentImage, - alt: 'close', - title: 'close' - })) - .click(function(event) { - event.preventDefault(); - hide($(this).attr('id').substring(2)); - }) - ); - }); - }; - - var opts = { - processVoteURL: '/_process_vote', - addCommentURL: '/_add_comment', - getCommentsURL: '/_get_comments', - acceptCommentURL: '/_accept_comment', - deleteCommentURL: '/_delete_comment', - commentImage: '/static/_static/comment.png', - closeCommentImage: '/static/_static/comment-close.png', - loadingImage: '/static/_static/ajax-loader.gif', - commentBrightImage: '/static/_static/comment-bright.png', - upArrow: '/static/_static/up.png', - downArrow: '/static/_static/down.png', - upArrowPressed: '/static/_static/up-pressed.png', - downArrowPressed: '/static/_static/down-pressed.png', - voting: false, - moderator: false - }; - - if (typeof COMMENT_OPTIONS != "undefined") { - opts = jQuery.extend(opts, COMMENT_OPTIONS); - } - - var popupTemplate = '\ -
    \ -

    \ - Sort by:\ - best rated\ - newest\ - oldest\ -

    \ -
    Comments
    \ -
    \ - loading comments...
    \ -
      \ -
      \ -

      Add a comment\ - (markup):

      \ -
      \ - reStructured text markup: *emph*, **strong**, \ - ``code``, \ - code blocks: :: and an indented block after blank line
      \ -
      \ - \ -

      \ - \ - Propose a change ▹\ - \ - \ - Propose a change ▿\ - \ -

      \ - \ - \ - \ - \ -
      \ -
      \ -
      '; - - var commentTemplate = '\ -
      \ -
      \ -
      \ - \ - \ - \ - \ - \ - \ -
      \ -
      \ - \ - \ - \ - \ - \ - \ -
      \ -
      \ -
      \ -

      \ - <%username%>\ - <%pretty_rating%>\ - <%time.delta%>\ -

      \ -
      <#text#>
      \ -

      \ - \ - reply ▿\ - proposal ▹\ - proposal ▿\ - \ - \ -

      \ - 
      \
-<#proposal_diff#>\
-
      \ -
        \ -
        \ -
        \ -
        \ - '; - - var replyTemplate = '\ -
      • \ -
        \ -
        \ - \ - \ - \ - \ - \ -
        \ -
        \ -
        • '; - - $(document).ready(function() { - init(); - }); -})(jQuery); - -$(document).ready(function() { - // add comment anchors for all paragraphs that are commentable - $('.sphinx-has-comment').comment(); - - // highlight search words in search results - $("div.context").each(function() { - var params = $.getQueryParameters(); - var terms = (params.q) ? params.q[0].split(/\s+/) : []; - var result = $(this); - $.each(terms, function() { - result.highlightText(this.toLowerCase(), 'highlighted'); - }); - }); - - // directly open comment window if requested - var anchor = document.location.hash; - if (anchor.substring(0, 9) == '#comment-') { - $('#ao' + anchor.substring(9)).click(); - document.location.hash = '#s' + anchor.substring(9); - } -}); diff --git a/static_root/doc/srrietveld/api/api-objects.txt b/static_root/doc/srrietveld/api/api-objects.txt deleted file mode 100644 index 2abeed19..00000000 --- a/static_root/doc/srrietveld/api/api-objects.txt +++ /dev/null @@ -1,441 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        Package srrietveld

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        Constants: __version__ -- full version of this SrRietveld release

        - -
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        Version: - 1.0beta.dev-r6361-20110319 -

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        Source Code for Package diffpy.srrietveld

        -
        - 1  ############################################################################## 
- 2  # 
- 3  # diffpy.srrietveld by DANSE Diffraction group 
- 4  #                   Simon J. L. Billinge 
- 5  #                   (c) 2010 Trustees of the Columbia University 
- 6  #                   in the City of New York.  All rights reserved. 
- 7  # 
- 8  # File coded by:    Peng Tian 
- 9  # 
-10  # See AUTHORS.txt for a list of people who contributed. 
-11  # See LICENSE.txt for license information. 
-12  # 
-13  ############################################################################## 
-14   
-15  '''Constants: 
-16      __version__ -- full version of this SrRietveld release 
-17  ''' 
-18   
-19  from diffpy.srrietveld.version import __version__ 
-20   
-21  # End of file 
-22   
-
        -
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        Package addon

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        -   - - __package__ = None -
        -

        Imports: - datafile -


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        Source Code for Package diffpy.srrietveld.addon

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        Module datafile

        source code

        -
        -datafile.py is to convert different format files into Fullprof/GSAS readable 
-format. And save x, y, sigma into data dictionary.
-    Fullprof format is the standard XYSigma format.
-    GSAS     format is one of the following:
-                1. Timemap; 2. FXYE; 3. ESD; 4. STD.
-
-
        - - - - - - - - - - -
        - Classes
        -   - - DataFileConverter
        - Unify to convert input data file to engine file and save the - XYSigma into data dictionary. -
        - - - - - - - - - - - - -
        - Functions
        -   - - - - - - -
        createDataDict(datainfofile, - datadirectory)
        - Create datadict template for refine.py        		 - source code - -
        - -
        -   - - - - - - -
        readFileList(datafilelist, - enginename)
        - Read datafile content based on datafilelist.        		 - source code - -
        - -
        - - - - - - - - - - - - -
        - Variables
        -   - - __id__ = '$Id: datafile.py 6420 2011-03-29 10:32:46Z yshang $' -
        -   - - __package__ = 'diffpy.srrietveld.addon' -
        -

        Imports: - checkFormat, - math, - os -


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        Source Code for Module diffpy.srrietveld.addon.datafile

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2009 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Peng Tian 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14   
- 15  """ datafile.py is to convert different format files into Fullprof/GSAS readable  
- 16  format. And save x, y, sigma into data dictionary. 
- 17      Fullprof format is the standard XYSigma format. 
- 18      GSAS     format is one of the following: 
- 19                  1. Timemap; 2. FXYE; 3. ESD; 4. STD. 
- 20   
- 21  """ 
- 22      
- 23  __id__ = "$Id: datafile.py 6420 2011-03-29 10:32:46Z yshang $" 
- 24   
- 25  import os 
- 26  import math 
- 27  from diffpy.srrietveld.utility import checkFormat 
- 28   
-
         29 -class DataFileConverter: 
-
         30      """ Unify to convert input data file to engine file and  
- 31          save the XYSigma into data dictionary. """ 
- 32   
-
         33 -    def __init__(self, datafullpathname, instrumentfile=None, banklist=None): 
-
         34          """ Initialization """ 
- 35          self.inputfullname = datafullpathname 
- 36          self.inputformat = checkFormat(datafullpathname) 
- 37          self.instrumentfile = instrumentfile 
- 38          self.banklist = banklist 
- 39          
- 40          self.datadict = {} 
- 41          if banklist == None: 
- 42              banklist = [1]  
- 43          for bankid in banklist: 
- 44              self.datadict[int(bankid)] = {"Name":"", "x":[], "y":[], "dy":[]} 
- 45          return 
-
         46   
-
         47 -    def readDataFile(self, filename): 
-
         48          """ Read input data file """ 
- 49          inputfile = open(filename, "r") 
- 50          filelines = inputfile.readlines() 
- 51          inputfile.close() 
- 52          return filelines 
-
         53          
-
         54 -    def writeDataFile(self, outlines, outfilename):   
-
         55          """ Write output data file """ 
- 56          outfile = open(outfilename, "w") 
- 57          outfile.write(outlines) 
- 58          outfile.close() 
- 59          return 
-
         60   
-
         61 -    def toFPFile(self, inputfile, outputfile, bankid, expfilename=""): 
-
         62          """ Convert input file to FullProf readable file. """ 
- 63   
- 64          dataformat = checkFormat(inputfile) 
- 65          if dataformat == "xye": 
- 66              self.xyeToFP(inputfile, outputfile, bankid) 
- 67          elif dataformat == "chi": 
- 68              self.chiToFP(inputfile, outputfile, bankid) 
- 69          elif dataformat in ["gsa", "gda", "raw", "fxye"]: 
- 70              outbasename = os.path.basename(outputfile) 
- 71              processdir = outputfile.split(outbasename)[0] 
- 72              #outrootname = os.path.splitext(outbasename)[0] 
- 73              #outtxtname = outputfile.split(outbasename)[0] + outrootname + ".txt" 
- 74              gsadatafile = self.exportGSASToXYE(inputfile, self.instrumentfile, 
- 75                                                  bankid, expfilename, processdir) 
- 76              #self.normalizeGSAS(gsadatafile) 
- 77              self.xyeToFP(gsadatafile, outputfile, bankid) 
- 78              #os.remove(gsadatafile) 
- 79          else: 
- 80              raise NotImplementedError  
- 81          return     
-
         82   
-
         83 -    def normalizeGSAS(self, gsadatafile): 
-
         84          """ Normalize GSAS data file from rawplot to XYSigma format. """ 
- 85          # 1. read file 
- 86          ifile = open(gsadatafile, "r") 
- 87          lines = ifile.readlines() 
- 88          ifile.close() 
- 89   
- 90          # 2. writeout xyefile 
- 91          outstring = "" 
- 92          for id in range(6): 
- 93              outstring += "#\n" 
- 94          for line in lines[1:]: 
- 95              terms = line.strip().split() 
- 96              x = float(terms[0])*1000 
- 97              y = float(terms[1])/float(terms[2]) 
- 98              dy = math.sqrt(float(terms[1]))/float(terms[2]) 
- 99              outstring += "%-10.4f     %-10.4f     %-10.5f\n" % (x, y, dy) 
-100           
-101          # 3. write out xysigma file 
-102          self.writeDataFile(outstring, gsadatafile) 
-103          return  
-
        104   
-
        105 -    def toGSASFile(self, inputfile, outputfile, bankid, stype=None): 
-
        106          """ Convert input file to GSAS readable file. """ 
-107   
-108          dataformat = checkFormat(inputfile) 
-109          if dataformat in ["dat", "chi", "txt", "xye"]: 
-110              filelines = self.readDataFile(inputfile) 
-111          else: 
-112              raise NotImplementedError 
-113           
-114          datadict = self.datadict[bankid] 
-115          datadict["Name"] = outputfile 
-116          for line in filelines[4:]: 
-117              terms = line.strip().split() 
-118              if terms[0] == "#" or len(terms) != 2: 
-119                  continue 
-120              else: 
-121                  try:  
-122                      x = float(terms[0]) 
-123                      y = float(terms[1]) 
-124                      # save data 
-125                      datadict["x"].append(x) 
-126                  except ValueError: 
-127                      pass 
-128                  try: 
-129                      dy = float(terms[2]) 
-130                  except: 
-131                      dy = math.sqrt(abs(y)) 
-132                  datadict["dy"].append(dy) 
-133                   
-134                  if stype: 
-135                      import random  
-136                      y_rad = random.gauss(y, dy) 
-137                      if y_rad <= 0: 
-138                          y = 2 * y - y_rad 
-139                      else: 
-140                          y = y_rad  
-141                  datadict["y"].append(y) 
-142   
-143          outlines = self.writeGSASStr(bankid) 
-144          self.writeDataFile(outlines, outputfile)                     
-145   
-146          return  
-
        147       
-
        148 -    def readGSASFile(self, gsasfile, bankid): 
-
        149          """ Read GSAS file into datadict """ 
-150          # 0. convert GSAS file to XYSigma format 
-151          outbasename = os.path.basename(gsasfile) 
-152          outrootname = os.path.splitext(outbasename)[0] 
-153          outtxtname = gsasfile.split(outbasename)[0] + outrootname + ".txt" 
-154          gsadatafile = self.exportGSASToXY(gsasfile, self.instrumentfile, 
-155                                                  bankid, outtxtname) 
-156          self.normalizeGSAS(gsadatafile) 
-157          # 1. read input file 
-158          filelines = self.readDataFile(gsadatafile) 
-159           
-160          # 2. split out the x, y, dy 
-161          datadict = self.datadict[bankid] 
-162          datadict["Name"] = gsasfile 
-163          for line in filelines: 
-164              terms = line.strip().split() 
-165              if terms == []: 
-166                  continue 
-167              if terms[0] == "#" and filelines.index(line) < 6: 
-168                  pass 
-169              else: 
-170                  try:  
-171                      x = float(terms[0]) 
-172                      y = float(terms[1]) 
-173                      dy = float(terms[2]) 
-174                      # save data 
-175                      datadict["x"].append(x) 
-176                      datadict["y"].append(y) 
-177                      datadict["dy"].append(dy) 
-178                  except ValueError: 
-179                      pass 
-180          return 
-
        181    
-
        182 -    def writeGSASStr(self, bankid): 
-
        183          """ Return string of integrated intensities in GSAS format. 
-184          """ 
-185          lines = [] 
-186          ltitle = 'Angular Profile: %s' % os.path.basename(self.inputfullname) 
-187          if len(ltitle) > 80:    ltitle = ltitle[:80] 
-188          lines.append("%-80s" % ltitle) 
-189          datadict = self.datadict[bankid] 
-190          nchan = len(datadict["y"]) 
-191          nrec = int(math.ceil(nchan/10.0)) 
-192          # two-theta0 and dtwo-theta in centidegrees 
-193          tth0_cdg = datadict["x"][0] * 100 
-194          dtth_cdg = (datadict["x"][-1] - datadict["x"][0]) / \ 
-195                          (len(datadict["x"]) - 1) * 100 
-196          lbank = "BANK %4i %4i %4i CONST %9.5f %9.5f %9.5f %9.5f STD" % \ 
-197                  (bankid, nchan, nrec, tth0_cdg, dtth_cdg, 0, 0) 
-198          lines.append("%-80s" % lbank) 
-199          lrecs = [ "%2i%6.0f" % (1, iobs) for iobs in datadict["y"] ] 
-200          for i in range(0, len(lrecs), 10): 
-201              lines.append("".join(lrecs[i:i+10])) 
-202          lines[-1] = "%-80s" % lines[-1] 
-203          rv = "\r\n".join(lines) + "\r\n" 
-204          return rv 
-
        205   
-
        206 -    def chiToFP(self, chifile, outputfile, bankid, stype=None): 
-
        207          """ Convert .chi file to Fullprof format file """ 
-208            
-209          # 1. read input file 
-210          filelines = self.readDataFile(chifile) 
-211           
-212          # 2. split out the x, y, dy 
-213          datadict = self.datadict[bankid] 
-214          datadict["Name"] = outputfile 
-215          outlines = "#\n" 
-216          outlines += "#\n" 
-217          for line in filelines: 
-218              terms = line.strip().split() 
-219              if terms == []: 
-220                  continue 
-221              if terms[0] == "#" or filelines.index(line) < 4: 
-222                  outlines += line 
-223              else: 
-224                  try:  
-225                      x = float(terms[0]) 
-226                      y = float(terms[1]) 
-227                      dy = math.sqrt(y) 
-228                      if stype: 
-229                          import random 
-230                          y_rad = random.gauss(y, dy) 
-231                          if y_rad <= 0: 
-232                              y = 2 * y - y_rad 
-233                          else: 
-234                              y = y_rad 
-235                      # save data 
-236                      datadict["x"].append(x) 
-237                      datadict["y"].append(y) 
-238                      datadict["dy"].append(dy) 
-239                      # add into outlines 
-240                      outlines += "%-15s   %-15s   %-15s\n"% (x, y, dy) 
-241                  except ValueError: 
-242                      pass 
-243              
-244          # 3. write out the Fullprof file 
-245          self.writeDataFile(outlines, outputfile) 
-246          return 
-
        247      
-
        248 -    def xyeToFP(self, xyefile, outputfile, bankid, stype=None): 
-
        249          """ Convert XYSigma format file to Fullprof format file """ 
-250            
-251          # 1. read input file 
-252          filelines = self.readDataFile(xyefile) 
-253           
-254          # 2. split out the x, y, dy 
-255          datadict = self.datadict[bankid] 
-256          datadict["Name"] = outputfile 
-257          outlines = "" 
-258          for line in filelines: 
-259              terms = line.strip().split() 
-260              if terms == []: 
-261                  continue 
-262              if terms[0] == "#" and filelines.index(line) < 6: 
-263                  outlines += line 
-264              else: 
-265                  try:  
-266                      x = float(terms[0]) 
-267                      y = float(terms[1]) 
-268                      dy = float(terms[2]) 
-269                      if stype: 
-270                          import random 
-271                          y_rad = random.gauss(y, dy) 
-272                          if y_rad <= 0: 
-273                              y = 2 * y - y_rad 
-274                          else: 
-275                              y = y_rad  
-276                      # save data 
-277                      datadict["x"].append(x) 
-278                      datadict["y"].append(y) 
-279                      datadict["dy"].append(dy) 
-280                      # add into outlines 
-281                      outlines += "%-15s   %-15s   %-15s\n"% (x, y, dy) 
-282                  except ValueError: 
-283                      pass 
-284              
-285          # 3. write out the Fullprof file 
-286          self.writeDataFile(outlines, outputfile) 
-287          return 
-
        288            
-
        289 -    def xyeToChi(self, inputfile, outputfile, bankid): 
-
        290          """ Convert XYSigma format file to .chi file """ 
-291   
-292          # 1. read input file 
-293          filelines = self.readDataFile(inputfile) 
-294           
-295          # 2. split out the x, y, dy 
-296          datadict = self.datadict[bankid] 
-297          datadict["Name"] = outputfile 
-298          outlines = "" 
-299          for line in filelines: 
-300              terms = line.strip().split() 
-301              if terms[0] == "#" and filelines.index(line) < 4: 
-302                  outlines += line 
-303                  continue 
-304              else: 
-305                  try:  
-306                      x = float(terms[0]) 
-307                      y = float(terms[1]) 
-308                      dy = float(terms[2]) 
-309                      # save data 
-310                      datadict["x"].append(x) 
-311                      datadict["y"].append(y) 
-312                      datadict["dy"].append(dy) 
-313                      # add into outlines 
-314                      outlines += "%-15s   %-15s   %-15s\n"% (x, y, dy) 
-315                  except ValueError: 
-316                      pass 
-317              
-318          # 3. write out the Chi file 
-319          self.writeDataFile(outlines, outputfile) 
-320          return 
-
        321   
-
        322 -    def checkEXPFile(self, expfilename, gsafbasename): 
-
        323          """Check whether the file name is right in .EXP file 
-324          """ 
-325          print expfilename, gsafbasename 
-326          flines = self.readDataFile(expfilename) 
-327          lid = -1 
-328          for line in flines: 
-329              lid += 1 
-330              if line.count("HST  1  HFIL") == 1: 
-331                  terms = line.strip().split() 
-332                  if terms[3] == gsafbasename: 
-333                      return 
-334                  else: 
-335                      relen = len(gsafbasename) 
-336                      flines[lid] = line[:14] + gsafbasename + line[relen+14:] 
-337                      ofile = open(expfilename, "w") 
-338                      ofile.writelines(flines) 
-339                      ofile.close() 
-340                      return 
-341          return 
-
        342   
-
        343 -    def exportGSASToXYE(self, gsafname, iparmfname, bankid, expfilename, processdir): 
-
        344          """ Run Powpref and Genles to export diffraction pattern from raw GSAS file 
-345          """ 
-346          import shutil 
-347          import diffpy.pygsas.genles   as GL 
-348          import diffpy.pygsas.rungsas  as RG 
-349   
-350           
-351          expbasename = os.path.basename(expfilename) 
-352          exprootname = os.path.splitext(expbasename)[0] 
-353          expdes = os.path.join(processdir, exprootname.upper() + ".EXP") 
-354          shutil.copy(expfilename, expdes) 
-355          # check the EXP file, replace the file name if neccessary 
-356          gsafbasename = os.path.basename(gsafname) 
-357          self.checkEXPFile(expdes, gsafbasename) 
-358           
-359          desgsaf = os.path.join(processdir, gsafbasename) 
-360          try: 
-361              shutil.copy(gsafname, desgsaf) 
-362          except: 
-363              pass 
-364          if iparmfname: 
-365              iparmfbasename = os.path.basename(iparmfname) 
-366              desiparm = os.path.join(processdir, iparmfbasename) 
-367              shutil.copy(iparmfname, desiparm)  
-368          GL.runPowGen(exprootname, processdir, "Refine", 0, "l") 
-369          lstfile = os.path.join(processdir, exprootname.upper() + ".LST") 
-370          lstbkfile = lstfile + "bk" 
-371          shutil.move(lstfile, lstbkfile) 
-372          RG.runHstdmp(exprootname, processdir, bankid) 
-373   
-374          # write out XYE file in processdir 
-375          outfilename = os.path.join(processdir, exprootname + ".dat") 
-376          outlines = ["#\n", "#\n", "#\n", "#\n", "#\n", "#\n"] 
-377          hstfile = open(lstfile) 
-378          hstlines = hstfile.readlines() 
-379          hstfile.close() 
-380          hstlen = len(hstlines) 
-381          for line_id in range(1, hstlen): 
-382              terms = hstlines[line_id].strip().split() 
-383              try: 
-384                  int(terms[0]) 
-385                  x = float(terms[2])*1000 
-386                  y = float(terms[3]) 
-387                  dy = math.sqrt(1/float(terms[7])) 
-388                  newline = "%-10.4f     %-10.4f     %-10.5f\n" % (x, y, dy) 
-389                  outlines.append(newline) 
-390              except: 
-391                  continue 
-392          ofile = open(outfilename, "w") 
-393          ofile.writelines(outlines) 
-394          ofile.close() 
-395          return outfilename 
-
        396   
-
        397 -def createDataDict(datainfofile, datadirectory): 
-
        398      """ Create datadict template for refine.py """ 
-399      datadict = {} 
-400   
-401      # 1. read datainfofile 
-402      infofile = open(datainfofile, "r") 
-403      infolines = infofile.readlines() 
-404      infofile.close() 
-405   
-406      # 2. split line and create datafile path 
-407      for line in infolines: 
-408          terms = line.strip().split() 
-409          try: 
-410              key = int(terms[1]) 
-411          except:  
-412              key = float(terms[1]) 
-413          try: 
-414              datadict[key] = {"Name": datadirectory + "/" + terms[0]} 
-415          except IOError: 
-416              raise IOError("%s isn't recognized!" % datainfofile) 
-417   
-418      return datadict 
-
        419   
-
        420 -def readFileList(datafilelist, enginename): 
-
        421      """ Read datafile content based on datafilelist.""" 
-422      import os, numpy 
-423      xlist = [] 
-424      ylist = [] 
-425      outfilelist = [] 
-426       
-427      m = -1  
-428      for datafile in datafilelist: 
-429          fileid = datafilelist.index(datafile) 
-430          dfv = DataFileConverter(datafile, banklist=[1]) 
-431          basefilename = os.path.basename(datafile) 
-432          if enginename == "fullprof": 
-433              outfilename = basefilename.split(".")[0] + ".dat" 
-434              dfv.toFPFile(datafile, outfilename, 1) 
-435          else: 
-436              outfilename = basefilename.split(".")[0] + ".gsa" 
-437              dfv.toGSASFile(datafile, outfilename, 1) 
-438          xlist.append(dfv.datadict[1]['x']) 
-439          ylist.append(dfv.datadict[1]['y']) 
-440          outfilelist.append(outfilename) 
-441           
-442          if m == -1: 
-443              # the first assignment 
-444              m = len(xlist[-1]) 
-445           
-446          # check it with the latest added x and y 
-447          if m != len(ylist[-1]) or m != len(xlist[-1]): 
-448              raise ValueError('Data is of wrong length.') 
-449               
-450           
-451      n = len(xlist) 
-452      x = numpy.empty((n, m)) 
-453      y = numpy.empty((n, m)) 
-454       
-455      x[:] = xlist 
-456      y[:] = ylist 
-457               
-458      return x, y, outfilelist 
-
        459   
-
        -
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        [frames] | no frames]
        -
        - -

        Class DataFileConverter

        source code

        -

        Unify to convert input data file to engine file and save the XYSigma - into data dictionary.

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - datafullpathname, - instrumentfile=None, - banklist=None)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        checkEXPFile(self, - expfilename, - gsafbasename)
        - Check whether the file name is right in .EXP file        		 - source code - -
        - -
        -   - - - - - - -
        chiToFP(self, - chifile, - outputfile, - bankid, - stype=None)
        - Convert .chi file to Fullprof format file        		 - source code - -
        - -
        -   - - - - - - -
        exportGSASToXYE(self, - gsafname, - iparmfname, - bankid, - expfilename, - processdir)
        - Run Powpref and Genles to export diffraction pattern from raw GSAS - file        		 - source code - -
        - -
        -   - - - - - - -
        normalizeGSAS(self, - gsadatafile)
        - Normalize GSAS data file from rawplot to XYSigma format.        		 - source code - -
        - -
        -   - - - - - - -
        readDataFile(self, - filename)
        - Read input data file        		 - source code - -
        - -
        -   - - - - - - -
        readGSASFile(self, - gsasfile, - bankid)
        - Read GSAS file into datadict        		 - source code - -
        - -
        -   - - - - - - -
        toFPFile(self, - inputfile, - outputfile, - bankid, - expfilename='')
        - Convert input file to FullProf readable file.        		 - source code - -
        - -
        -   - - - - - - -
        toGSASFile(self, - inputfile, - outputfile, - bankid, - stype=None)
        - Convert input file to GSAS readable file.        		 - source code - -
        - -
        -   - - - - - - -
        writeDataFile(self, - outlines, - outfilename)
        - Write output data file        		 - source code - -
        - -
        -   - - - - - - -
        writeGSASStr(self, - bankid)
        - Return string of integrated intensities in GSAS format.        		 - source code - -
        - -
        -   - - - - - - -
        xyeToChi(self, - inputfile, - outputfile, - bankid)
        - Convert XYSigma format file to .chi file        		 - source code - -
        - -
        -   - - - - - - -
        xyeToFP(self, - xyefile, - outputfile, - bankid, - stype=None)
        - Convert XYSigma format file to Fullprof format file        		 - source code - -
        - -
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        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Package addon :: - Module debyefitting - - - - - -
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        -
        - -

        Module debyefitting

        source code

        - - - - - - - - - -
        - Classes
        -   - - DebyeFitting
        - Class to perform Debye fitting -
        - - - - - - - - - - - - -
        - Functions
        -   - - - - - - -
        adps(m, - thetaD, - T)
        - Calculates atomic displacement factors within the Debye model        		 - source code - -
        - -
        -   - - - - - - -
        debye(T, - m, - thetaD)
        - A wrapped version of 'adps' that can handle an array of T-values.        		 - source code - -
        - -
        - - - - - - - - - - - - -
        - Variables
        -   - - __id__ = '$Id: debyefitting.py 6718 2011-08-23 21:33:20Z yshan... -
        -   - - __package__ = 'diffpy.srrietveld.addon' -
        -

        Imports: - numpy -


        - - - - - - -
        - Function Details
        - -
        - -
        - - -
        -

        adps(m, - thetaD, - T) -

        -         		source code  -
        - -

        Calculates atomic displacement factors within the Debye model

        -

        <u^2> = (3h^2/4 pi^2 m kB thetaD)(phi(thetaD/T)/(thetaD/T) + - 1/4)

        -

        arguments: m -- float -- mass of the ion in atomic mass units (e.g., C - = 12) thetaD -- float -- Debye Temperature T -- float -- temperature.

        -

        return: Uiso -- float -- the thermal factor from the Debye recipe at - temp T

        -
        -
        -
        -
        -
        - - - - - - -
        - Variables Details
        - -
        - -
        -

        __id__

        - -
        -
        -
        -
        Value:
        - 
        -'$Id: debyefitting.py 6718 2011-08-23 21:33:20Z yshang $'
-
        -
        -
        -
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        - - Package diffpy :: - Package srrietveld :: - Package addon :: - Module debyefitting - - - - - -
        [frames] | no frames]
        -
        -

        Source Code for Module diffpy.srrietveld.addon.debyefitting

        -
        -  1  ######################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2010 Trustees of the Columbia University 
-  6  #                   in the City of New York. All rights reserved. 
-  7  # 
-  8  # File coded by:    Yingrui Shang, Chris Farrow 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ######################################################################## 
- 14   
- 15  __id__ = '$Id: debyefitting.py 6718 2011-08-23 21:33:20Z yshang $' 
- 16   
-
         17 -class DebyeFitting(object): 
-
         18      '''Class to perform Debye fitting 
- 19   
- 20      This fits the isotropic ADPs (Uiso) of a specified atom in a material 
- 21      according to the Debye model. 
- 22   
- 23      Attributes 
- 24      x       --  Temperature values (default none). 
- 25      y       --  ADP values of the atom at temperatures specfied by x 
- 26      dy      --  Uncertainty in y (default None). 
- 27      mass    --  The mass of the atom in atomic mass units (e.g., 12 for carbon) 
- 28      _residual   --  The residual function to be optimized. 
- 29      results --  The full results returned from the optimizer (using 
- 30                  full_results = True). See the leastsq 
- 31                  function from scipy.optimize for the format. 
- 32      thetaD  --  The Debye temperature extracted from the ADPs by fitting the 
- 33                  Debye model. 
- 34      offset  --  The static offset in the ADPs extracted by fitting the Debye 
- 35                  model. 
- 36   
- 37      ''' 
- 38   
-
         39 -    def __init__(self, x, y, mass, dy = None): 
-
         40          '''Constructor of the fitting object 
- 41   
- 42          x       --  A numpy array of temperatures. 
- 43          y       --  The thermal parameters over the calculation range. 
- 44          mass    --  The mass of the atom in atomic mass units. 
- 45          dy      --  The uncertainty in the thermal parameters over the 
- 46                      calculation range. If this is None (default), then the 
- 47                      uncertainties are set to unity. 
- 48           
- 49          ''' 
- 50          self.x = x 
- 51          self.y = y 
- 52          self.dy = dy 
- 53          self.mass = mass 
- 54          self._residual = None 
- 55          self.results = None 
- 56          self.thetaD = None 
- 57          self.offset = None 
- 58          self.yfit = None 
- 59   
- 60          if self.dy is None: 
- 61              import numpy 
- 62              self.dy = numpy.ones_like(self.x) 
- 63          return 
-
         64   
-
         65 -    def _makeResidual(self): 
-
         66          """Make the vector residual function to be optimized.""" 
- 67          if self.x is None or self.y is None or self.mass is None: 
- 68              m = "Temperature, ADPs and mass must be specified" 
- 69              raise AttributeError(m) 
- 70   
- 71          def residual(*pars): 
- 72   
- 73              self.thetaD, self.offset = pars[0] 
- 74              self.yfit = debye(self.x, self.mass, self.thetaD) 
- 75              self.yfit += self.offset 
- 76   
- 77              chiv = (self.y - self.yfit) / self.dy 
- 78   
- 79              return chiv 
-
         80   
- 81          self._residual = residual 
- 82   
- 83          return 
-
         84   
-
         85 -    def _optimize(self): 
-
         86          """Optimize the recipe created above using scipy. 
- 87       
- 88          The FitRecipe we created in makeRecipe has a 'residual' method that we 
- 89          can be minimized using a scipy optimizer. The details are described in 
- 90          the source. 
- 91       
- 92          """ 
- 93          from scipy.optimize.minpack import leastsq 
- 94   
- 95          self.results = leastsq(self._residual, [100, 0], full_output = True) 
- 96           
- 97          self.thetaD, self.offset = self.results[0] 
- 98           
- 99          def _calc_error(args): 
-100              """Get the results and covarience of the fitted parameters"""  
-101              from numpy import array 
-102              from math import sqrt 
-103              p, cov, info, mesg, success = args 
-104              chisq=sum(info["fvec"]*info["fvec"]) 
-105              dof=len(info["fvec"])-len(p) 
-106              sigma = array([sqrt(cov[i,i])*sqrt(chisq/dof) for i in range(len(p))]) 
-107              return p, sigma 
-
        108   
-109          params, sig = _calc_error(self.results) 
-110           
-111          [self.thetaD, self.offset], [self.cov_thetaD, self.cov_offset] = params, sig 
-112   
-113          return 
-114           
-
        115 -    def fit(self): 
-
        116          """Create the recipe, fit it and get the results.""" 
-117          self._makeResidual() 
-118          self._optimize() 
-119          return 
-
        120       
-
        121 -    def saveResults(self, filename): 
-
        122          """Save the results to a text file""" 
-123          content = [] 
-124          content.append('# ThetaD %e / %e ' % (self.thetaD, self.cov_thetaD)) 
-125          content.append('# offset %e / %e ' % (self.offset, self.cov_offset)) 
-126          content.append('x\ty\tyfit\tdy') 
-127          for ii in range(len(self.x)): 
-128              str = '%f\t%f\t%f\t%f' % (self.x[ii], self.y[ii],self.yfit[ii], self.dy[ii]) 
-129              content.append(str) 
-130          content = '\n'.join(content) 
-131   
-132          f = open(filename, 'w') 
-133          f.write(content) 
-134           
-135          return 
-
        136   
-137   
-
        138 -    def plotResults(self): 
-
        139          """Plot the results contained within a refined FitRecipe.""" 
-140          x = self.x 
-141          y = self.y 
-142          #ycalc = self.results[2]['fvec'] 
-143   
-144          # This stuff is specific to pylab from the matplotlib distribution. 
-145          import pylab 
-146          pylab.plot(x, y, 'b.', label = "data") 
-147          ylabel = "${\Theta}_D = %.2f K, offset = %.2f \AA^2$" %\ 
-148                  (self.thetaD, self.offset) 
-149          pylab.plot(x, self.yfit, 'g-', label = ylabel) 
-150          pylab.legend(loc = (0.0,0.8)) 
-151          pylab.xlabel("Temperature (K)") 
-152          pylab.ylabel("$U_{iso} (\AA^2)$") 
-153          pylab.show() 
-154          return 
-
        155       
-156  # End class DebyeFitting 
-157   
-158  import numpy 
-159  # Definition of the debye fitting function 
-
        160 -def debye(T, m, thetaD): 
-
        161      """A wrapped version of 'adps' that can handle an array of T-values.""" 
-162      y = numpy.array([adps(m, thetaD, x) for x in T]) 
-163      return y 
-
        164   
-
        165 -def adps(m, thetaD, T): 
-
        166      """Calculates atomic displacement factors within the Debye model 
-167   
-168      <u^2> = (3h^2/4 pi^2 m kB thetaD)(phi(thetaD/T)/(thetaD/T) + 1/4) 
-169   
-170      arguments: 
-171      m -- float -- mass of the ion in atomic mass units (e.g., C = 12) 
-172      thetaD -- float -- Debye Temperature 
-173      T -- float -- temperature. 
-174   
-175      return: 
-176      Uiso -- float -- the thermal factor from the Debye recipe at temp T 
-177   
-178      """ 
-179      h = 6.6260755e-34   # Planck's constant. J.s of m^2.kg/s 
-180      kB = 1.3806503e-23  # Boltzmann's constant. J/K 
-181      amu = 1.66053886e-27 # Atomic mass unit. kg 
-182   
-183      def __phi(x): 
-184          """evaluates the phi integral needed in Debye calculation 
-185   
-186          phi(x) = (1/x) int_0^x xi/(exp(xi)-1) dxi 
-187   
-188          arguments: 
-189          x -- float -- value of thetaD (Debye temperature)/T 
-190   
-191          returns: 
-192          phi -- float -- value of the phi function 
-193   
-194          """ 
-195          def __debyeKernel(xi): 
-196              """function needed by debye calculators 
-197   
-198              """ 
-199              y = xi/(numpy.exp(xi)-1) 
-200              return y 
-
        201   
-202          import scipy.integrate 
-203   
-204          int = scipy.integrate.quad(__debyeKernel, 0, x) 
-205          phi = (1/x) * int[0] 
-206   
-207          return phi 
-208   
-209   
-210      m = m * amu 
-211      u2 = (3*h**2 / (4 * numpy.pi**2 *m *kB *thetaD))*\ 
-212              (__phi(thetaD/T)/(thetaD/T) + 1./4.) 
-213      u2 *= 1e20 
-214      return u2 
-215   
-
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        Class DebyeFitting

        source code

        -
        -object --+
-         |
-        DebyeFitting
-
        - -
        -
        -Class to perform Debye fitting
-
-This fits the isotropic ADPs (Uiso) of a specified atom in a material
-according to the Debye model.
-
-Attributes
-x       --  Temperature values (default none).
-y       --  ADP values of the atom at temperatures specfied by x
-dy      --  Uncertainty in y (default None).
-mass    --  The mass of the atom in atomic mass units (e.g., 12 for carbon)
-_residual   --  The residual function to be optimized.
-results --  The full results returned from the optimizer (using
-            full_results = True). See the leastsq
-            function from scipy.optimize for the format.
-thetaD  --  The Debye temperature extracted from the ADPs by fitting the
-            Debye model.
-offset  --  The static offset in the ADPs extracted by fitting the Debye
-            model.
-
-
        - - - - - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - x, - y, - mass, - dy=None)
        - Constructor of the fitting object        		 - source code - -
        - -
        -   - - - - - - -
        fit(self)
        - Create the recipe, fit it and get the results.        		 - source code - -
        - -
        -   - - - - - - -
        plotResults(self)
        - Plot the results contained within a refined FitRecipe.        		 - source code - -
        - -
        -   - - - - - - -
        saveResults(self, - filename)
        - Save the results to a text file        		 - source code - -
        - -
        -

        Inherited from object: - __delattr__, - __format__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__, - __sizeof__, - __str__, - __subclasshook__ -

        -
        - - - - - - - - - -
        - Properties
        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - x, - y, - mass, - dy=None) -
        (Constructor) -

        -         		source code  -
        - - 
        -Constructor of the fitting object
-
-x       --  A numpy array of temperatures.
-y       --  The thermal parameters over the calculation range.
-mass    --  The mass of the atom in atomic mass units.
-dy      --  The uncertainty in the thermal parameters over the
-            calculation range. If this is None (default), then the
-            uncertainties are set to unity.
-
-
        -
        -
        Overrides: - object.__init__ -
        -
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        Module mcsampling

        source code

        - - - - - - - - - -
        - Classes
        -   - - MonteCarloSampling
        - Monte Carlo Sampling for diffraction pattern. -
        - - - - - - - - - - - - -
        - Functions
        -   - - - - - - -
        importFromGSASstd(datafilename, - bankid)
        - Import a GSAS .raw file and get the dict of y, sd        		 - source code - -
        - -
        -   - - - - - - -
        importFromGSAStimemap(datafilename, - bankid)
        - Import a GSAS .gsa/gda file and get the dict of y, sd        		 - source code - -
        - -
        - - - - - - - - - -
        - Variables
        -   - - __package__ = 'diffpy.srrietveld.addon' -
        -

        Imports: - SrrError, - os, - tempfile -


        - - - - - - -
        - Function Details
        - -
        - -
        - - -
        -

        importFromGSASstd(datafilename, - bankid) -

        -         		source code  -
        - -

        Import a GSAS .raw file and get the dict of y, sd

        -

        Arguments:

        -
          -
        • - datafilename : full-path name of .raw file; -
          • -
        -

        Return: datadict: a dictionary that includes series of yobs, sobs

        -
        -
        -
        -
        - -
        - -
        - - -
        -

        importFromGSAStimemap(datafilename, - bankid) -

        -         		source code  -
        - -

        Import a GSAS .gsa/gda file and get the dict of y, sd

        -

        Arguments:

        -
          -
        • - datafilename : full-path name of .gsa/gda file; -
          • -
        -

        Return: datadict: a dictionary that includes series of yobs, sobs

        -
        -
        -
        -
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        Source Code for Module diffpy.srrietveld.addon.mcsampling

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2011 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Peng Tian 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14   
- 15  import tempfile, os 
- 16  from diffpy.srrietveld.exceptions import SrrError 
- 17   
-
         18 -class MonteCarloSampling: 
-
         19      """ Monte Carlo Sampling for diffraction pattern.  
- 20      """ 
-
         21 -    def __init__(self, fit, snum, stype="Normal"): 
-
         22          """Initialization. 
- 23   
- 24          fit     --- a diffpy.refinementdata.Refinement object that stores a fit with only one pattern 
- 25          snum    --- number of samplings 
- 26          stype   --- type of sampling distribution 
- 27          """ 
- 28          self.fit = fit 
- 29          self.snum = snum 
- 30          self.stype = stype 
- 31          self.engine = self.getEngine() 
- 32          self.tempDir = tempfile.mkdtemp() 
- 33          return 
-
         34       
-
         35 -    def getEngine(self): 
-
         36          """Get engine type from fit object.  
- 37          """ 
- 38          classname = self.fit.getAttr("rietveldcls") 
- 39          if classname.count("gsas") == 1: 
- 40              engine = "gsas" 
- 41          else: 
- 42              engine = "fullprof" 
- 43          return engine 
-
         44                        
-
         45 -    def addSampleData(self): 
-
         46          """Convert data file if neccessary. 
- 47          """ 
- 48          from diffpy.srrietveld.addon.datafile import DataFileConverter as DFC 
- 49           
- 50          # only one pattern 
- 51          fullpath = self.fit.getObject("Pattern").getObject(0).get("Datafile")[0] 
- 52          instrumentfile = str(self.fit.getObject("Pattern").getObject(0).get("Instrumentfile")[0]) 
- 53          if not os.path.exists(fullpath): 
- 54              raise SrrError("Can not access the data file: " + fullpath) 
- 55   
- 56          expfilepath = os.path.join(os.getcwd(), self.fit.name + ".EXP") 
- 57          filebasename = os.path.basename(fullpath) 
- 58          rootname, extname = os.path.splitext(filebasename) 
- 59          newfullpath = os.path.join(self.tempDir, filebasename)  
- 60          dfc = DFC(fullpath, instrumentfile) 
- 61           
- 62          # sampling based on the datafile format 
- 63          if extname.lower() == ".xye":  
- 64              self.genSamplingFromxye(fullpath, newfullpath, 1, self.snum, dfc) 
- 65          elif extname.lower() == ".chi": 
- 66              self.genSamplingFromchi(fullpath, newfullpath, 1, self.snum, dfc) 
- 67          elif extname.lower() in [".gsa", ".gda"]: #TIMEMAP case 
- 68              self.genSamplingFromtimemap(fullpath, newfullpath, 1, self.snum, dfc, expfilepath) 
- 69          else: 
- 70              raise NotImplementedError  
- 71   
- 72          return self.fit 
-
         73   
-
         74 -    def genSamplingFromtimemap(self, fullpath, newfullpath, bankid, num, dfc, expfilepath): 
-
         75          """Sampling num of times based on distribution and save the new datafile in newfullpath.  
- 76          """ 
- 77          import random 
- 78          self.fit.reshape((num+1, ), ["SampleId", ], repeat=True) 
- 79          pattern = self.fit.getObject("Pattern").getObject(0) 
- 80          datafilelist = pattern.get("Datafile") 
- 81          datadict = importFromGSAStimemap(fullpath, 1) 
- 82          ys = datadict["yobs"] 
- 83          ss = datadict["sobs"] 
- 84          dstring = "" 
- 85          sidlist = [] 
- 86          for i in range(1, num+1): 
- 87              dline = "" 
- 88              sidlist.append(i) 
- 89              for idx in range(len(ys)): 
- 90                  y_int = ys[idx] 
- 91                  s_int = ss[idx] 
- 92                  y_rad = random.gauss(y_int, s_int) 
- 93                  if y_rad <= 0.0 : 
- 94                      y_rad = 2 * y_int - y_rad 
- 95                  if y_rad == 0.0: 
- 96                      y_rad = y_int 
- 97                  dstring += "%8.1f%8.1f" % (y_rad, s_int) 
- 98                  if (idx+1)%5 == 0: 
- 99                      dline += "%-80s\r\n" % dstring 
-100                      dstring = "" 
-101                  elif idx == len(ys)-1: 
-102                      dline += "%-80s\r\n" % dstring 
-103                      dstring = "" 
-104              datafullpath = newfullpath[:-4] + str(i) + ".gsa" 
-105              headerline = datadict["header"] 
-106              allline = headerline + dline 
-107              dfc.writeDataFile(allline, datafullpath) 
-108              if self.engine == "fullprof": 
-109                  outfullpath = newfullpath[:-4] + str(i) + ".dat" 
-110                  dfc.toFPFile(datafullpath, outfullpath, 1, expfilepath) 
-111                  datafullpath = outfullpath 
-112              datafilelist[i] = datafullpath 
-113          self.fit.set("SampleId", sidlist)  
-114          self.fit.resetStatus() 
-115          return 
-
        116   
-117   
-
        118 -    def genSamplingFromxye(self, fullpath, newfullpath, bankid, num, dfc): 
-
        119          """Sampling num of times based on distribution and save the new datafile in newfullpath.  
-120          """ 
-121          self.fit.reshape((num+1, ), ["SampleId", ], repeat=True) 
-122          pattern = self.fit.getObject("Pattern").getObject(0) 
-123          datafilelist = pattern.get("Datafile") 
-124          for i in range(1, num+1): 
-125              if self.engine == "fullprof": 
-126                  datafullpath = newfullpath[:-4] + str(i) + ".xye"  
-127                  dfc.xyetoFP(fullpath, datafullpath, 1, self.stype) 
-128              else: 
-129                  datafullpath = newfullpath[:-4] + str(i) + ".gsa" 
-130                  dfc.toGSASFile(fullpath, datafullpath, 1, self.stype) 
-131              datafilelist[i] = datafullpath 
-132           
-133          self.fit.resetStatus() 
-134          return  
-
        135       
-
        136 -    def genSamplingFromchi(self, fullpath, newfullpath, bankid, num, dfc): 
-
        137          """Sampling num of times based on distribution and save the new datafile in newfullpath.  
-138          """ 
-139          self.fit.reshape((num+1, ), ["SampleId", ], repeat=True) 
-140          pattern = self.fit.getObject("Pattern").getObject(0) 
-141          datafilelist = pattern.get("Datafile") 
-142          for i in range(1, num+1): 
-143              if self.engine == "fullprof": 
-144                  datafullpath = newfullpath[:-4] + str(i) + ".chi"  
-145                  dfc.chitoFP(fullpath, datafullpath, 1, self.stype) 
-146              else: 
-147                  datafullpath = newfullpath[:-4] + str(i) + ".gsa" 
-148                  dfc.toGSASFile(fullpath, datafullpath, 1, self.stype) 
-149              datafilelist[i] = datafullpath 
-150           
-151          self.fit.resetStatus() 
-152          return 
-
        153          
-
        154 -def importFromGSAStimemap(datafilename, bankid): 
-
        155      """Import a GSAS .gsa/gda file and get the dict of y, sd 
-156   
-157      Arguments: 
-158          - datafilename : full-path name of .gsa/gda file; 
-159   
-160      Return:  datadict: a dictionary that includes series of yobs, sobs 
-161      """ 
-162      try: 
-163          ffile = open(datafilename, "r") 
-164          lines = ffile.readlines() 
-165          ffile.close() 
-166      except IOError: 
-167          errmsg = "Fatal Error: Cannot Open File %-20s"% (datafilename) 
-168          raise IOError, errmsg 
-169       
-170      datadict = {"header": "", "yobs": [], "sobs": []} 
-171      firstbankline = False 
-172      bankline = False 
-173      for line in lines: 
-174          terms = line.strip().split() 
-175          if terms[0] == "BANK" and terms[1] == str(bankid): 
-176              firstbankline = True 
-177              bankline = True 
-178              datadict["header"] += line 
-179          elif terms[0] == "BANK" and terms[1] != str(bankid): 
-180              firstbankline = False 
-181              bankline = True  
-182          elif firstbankline == False and bankline == False: 
-183              datadict["header"] += line 
-184          elif firstbankline == True and bankline == True: 
-185              for i in range(5): 
-186                  try:  
-187                      datadict["yobs"].append(float(terms[2*i])) 
-188                      datadict["sobs"].append(float(terms[2*i+1])) 
-189                  except: 
-190                      break 
-191      return datadict 
-
        192   
-
        193 -def importFromGSASstd(datafilename, bankid): 
-
        194      """Import a GSAS .raw file and get the dict of y, sd 
-195   
-196      Arguments: 
-197          - datafilename : full-path name of .raw file; 
-198   
-199      Return:  datadict: a dictionary that includes series of yobs, sobs 
-200      """ 
-201      try: 
-202          ffile = open(datafilename, "r") 
-203          lines = ffile.readlines() 
-204          ffile.close() 
-205      except IOError: 
-206          errmsg = "Fatal Error: Cannot Open File %-20s"% (datafilename) 
-207          raise IOError, errmsg 
-208       
-209      datadict = {"header": "", "countid": [], "yobs": [], "sobs": []} 
-210      firstbankline = False 
-211      bankline = False 
-212      for line in lines: 
-213          id = lines.index(line) 
-214          terms = line.strip().split() 
-215          if terms[0] == "BANK": 
-216              bankline = True 
-217              if terms[1] == str(bankid): 
-218                  firstbankline = True             
-219                  datadict["header"] += line 
-220          elif firstbankline == False and bankline == False: 
-221              datadict["header"] += line 
-222          elif firstbankline == True and bankline == True: 
-223              for i in range(10): 
-224                  try:  
-225                      datadict["countid"].append(int(line[8*i:(8*i+2)])) 
-226                      yobs = int(line[(8*i+2):(8*i+7)]) 
-227                      datadict["yobs"].append(yobs) 
-228                      datadict["sobs"].append(yobs**0.5) 
-229                  except: 
-230                      break 
-231      return datadict 
-
        232   
-
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        - -

        Class MonteCarloSampling

        source code

        -

        Monte Carlo Sampling for diffraction pattern.

        - - - - - - - - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - fit, - snum, - stype='Normal')
        - Initialization.        		 - source code - -
        - -
        -   - - - - - - -
        addSampleData(self)
        - Convert data file if neccessary.        		 - source code - -
        - -
        -   - - - - - - -
        genSamplingFromchi(self, - fullpath, - newfullpath, - bankid, - num, - dfc)
        - Sampling num of times based on distribution and save the new datafile - in newfullpath.        		 - source code - -
        - -
        -   - - - - - - -
        genSamplingFromtimemap(self, - fullpath, - newfullpath, - bankid, - num, - dfc, - expfilepath)
        - Sampling num of times based on distribution and save the new datafile - in newfullpath.        		 - source code - -
        - -
        -   - - - - - - -
        genSamplingFromxye(self, - fullpath, - newfullpath, - bankid, - num, - dfc)
        - Sampling num of times based on distribution and save the new datafile - in newfullpath.        		 - source code - -
        - -
        -   - - - - - - -
        getEngine(self)
        - Get engine type from fit object.        		 - source code - -
        - -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - fit, - snum, - stype='Normal') -
        (Constructor) -

        -         		source code  -
        - -

        Initialization.

        -

        fit --- a diffpy.refinementdata.Refinement object that stores a - fit with only one pattern snum --- number of samplings stype --- - type of sampling distribution

        -
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        Module structurefile

        source code

        -

        structurefile.py is to convert different format structure files to a - dictionary. currently only cif file can be converted. Assume one cif for - one structure.

        - - - - - - - - - - -
        - Classes
        -   - - StructureFileConverter
        - Convert input structure file to a dictionary -
        - - - - - - - - - - - - -
        - Variables
        -   - - __id__ = '$Id: structurefile.py 5657 2010-07-09 19:43:17Z juha... -
        -   - - __package__ = 'diffpy.srrietveld.addon' -
        -

        Imports: - Structure -


        - - - - - - -
        - Variables Details
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        __id__

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        -'$Id: structurefile.py 5657 2010-07-09 19:43:17Z juhas $'
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        Source Code for Module diffpy.srrietveld.addon.structurefile

        -
        - 1  ############################################################################## 
- 2  # 
- 3  # diffpy.srrietveld by DANSE Diffraction group 
- 4  #                   Simon J. L. Billinge 
- 5  #                   (c) 2009 Trustees of the Columbia University 
- 6  #                   in the City of New York.  All rights reserved. 
- 7  # 
- 8  # File coded by:    Peng Tian 
- 9  # 
-10  # See AUTHORS.txt for a list of people who contributed. 
-11  # See LICENSE.txt for license information. 
-12  # 
-13  ############################################################################## 
-14   
-15  """ structurefile.py is to convert different format structure files to a dictionary. 
-16      currently only cif file can be converted. Assume one cif for one structure. 
-17  """ 
-18   
-19  __id__ = "$Id: structurefile.py 5657 2010-07-09 19:43:17Z juhas $" 
-20   
-21  from diffpy.Structure import Structure 
-22   
-
        24      """ Convert input structure file to a dictionary """ 
-25   
-
        26 -    def __init__(self, structurefile): 
-
        27          """ Initialization """ 
-28          import os 
-29          self.strufile = structurefile 
-30          filename = os.path.basename(structurefile) 
-31          self.name = os.path.splitext(filename)[0] 
-32          self.structure = Structure() 
-33          self.atominfo = self.structure.read(structurefile) 
-34          self.strudict = {'PHASE':[]} 
-35          return 
-
        36   
-
        37 -    def cifToDict(self): 
-
        38          """ put cif content to dictionary """ 
-39          import re 
-40   
-41          # set single Phase section 
-42          phase = {} 
-43          phase['Name'] = self.name 
-44          phase['a'] = self.structure.lattice.a 
-45          phase['b'] = self.structure.lattice.b 
-46          phase['c'] = self.structure.lattice.c 
-47          phase['alpha'] = self.structure.lattice.alpha 
-48          phase['beta'] = self.structure.lattice.beta 
-49          phase['gamma'] = self.structure.lattice.gamma 
-50          phase['Spacegroup'] = self.atominfo.cif_sgname 
-51          atomlist = self.atominfo.asymmetric_unit 
-52          for atom in atomlist: 
-53              atomkey = 'ATOM' + str(atomlist.index(atom)+1) 
-54              phase[atomkey] = [] 
-55              tempdict = {} 
-56              # find the atom name 
-57              res = re.search(r'([^0-9]*)', atom.name) 
-58              if res and res.groups(): 
-59                  atomname = res.groups()[0] 
-60              else: 
-61                  atomname = atom.name 
-62              tempdict['Name'] = atomname 
-63              tempdict['Symbol'] = atomname 
-64              tempdict['Typ'] = atomname 
-65              if atom.Bisoequiv <= 0.0: 
-66                  tempdict['Biso'] = 1.0 
-67              else: 
-68                  tempdict['Biso'] = atom.Bisoequiv 
-69              xyz = map(None, atom.xyz) 
-70              tempdict['X'] = xyz[0] 
-71              tempdict['Y'] = xyz[1] 
-72              tempdict['Z'] = xyz[2] 
-73              phase[atomkey].append(tempdict) 
-74          self.strudict['PHASE'].append(phase) 
-75          return self.strudict 
-
        76   
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        - -

        Class StructureFileConverter

        source code

        -

        Convert input structure file to a dictionary

        - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - structurefile)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        cifToDict(self)
        - put cif content to dictionary        		 - source code - -
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        Package applications

        source code

        -

        Constants: __version__ -- full version of this SrRietveld release

        - -
        -

        Version: - 1.0beta.dev-r6361-20110319 -

        -
        - - - - - - -
        - Submodules
        -
        - -
        - - - - - - - - - - - - -
        - Variables
        -   - - __id__ = '$Id: __init__.py 5658 2010-07-09 20:05:34Z juhas $' -
        -   - - __package__ = 'diffpy.srrietveld.applications' -
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        Source Code for Package diffpy.srrietveld.applications

        -
        - 1  ############################################################################## 
- 2  # 
- 3  # diffpy.srrietveld by DANSE Diffraction group 
- 4  #                   Simon J. L. Billinge 
- 5  #                   (c) 2010 Trustees of the Columbia University 
- 6  #                   in the City of New York.  All rights reserved. 
- 7  # 
- 8  # File coded by:    Pavol Juhas 
- 9  # 
-10  # See AUTHORS.txt for a list of people who contributed. 
-11  # See LICENSE.txt for license information. 
-12  # 
-13  ############################################################################## 
-14   
-15  '''Constants: 
-16      __version__ -- full version of this SrRietveld release 
-17  ''' 
-18   
-19  from diffpy.srrietveld.version import __version__ 
-20   
-21  # version 
-22  __id__ = "$Id: __init__.py 5658 2010-07-09 20:05:34Z juhas $" 
-23   
-24  # End of file 
-25   
-
        -
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        Module refine

        source code

        -

        Launch Rietveld refinement and control the refinement.

        - - - - - - - - - - -
        - Classes
        -   - - ReadInput
        - Parse input options and read xml files -
        - - - - - - - - - - - - -
        - Functions
        -   - - - - - - -
        applydata(fit, - datadict)
        - Expand fit to a fit array, with different data set        		 - source code - -
        - -
        -   - - - - - - -
        main() - source code - -
        - -
        - - - - - - - - - -
        - Variables
        -   - - __id__ = "$Id: refine.py 5658 2010-07-09 20:05:34Z juhas $" -
        -

        Imports: - Project, - Manager, - SeqManager, - FitRT -


        - - - - - - -
        - Function Details
        - -
        - -
        - - -
        -

        applydata(fit, - datadict) -

        -         		source code  -
        - -

        Expand fit to a fit array, with different data set

        -

        fit -- a project fit object datadict -- a dictionary of data files

        -
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        Source Code for Module diffpy.srrietveld.applications.refine

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2009 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Peng Tian 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14  """ Launch Rietveld refinement and control the refinement. """ 
- 15  __id__ = "$Id: refine.py 5658 2010-07-09 20:05:34Z juhas $" 
- 16   
- 17  from diffpy.srrietveld.convert.xmlparser import * 
- 18  from diffpy.srrietveld.project import Project 
- 19  from diffpy.srrietveld.manager import Manager, SeqManager 
- 20  from diffpy.srrietveld.fitrt import FitRT 
- 21   
-
         22 -class ReadInput: 
-
         23      """ Parse input options and read xml files """ 
-
         24 -    def __init__(self): 
-
         25          """ Initialization """ 
- 26          import sys 
- 27   
- 28          argv = sys.argv 
- 29          if len(argv) < 2: 
- 30              msg  = "Automatic Launched Refinement On Rietveld Refinement\n" 
- 31              msg += "\n%-10s -h  For Help"% (argv[0].split("/")[-1]) 
- 32              print msg 
- 33              sys.exit(1) 
- 34   
- 35          self.parseOptions() 
- 36          self.processInputs() 
- 37          self.run() 
- 38          return 
-
         39   
-
         40 -    def parseOptions(self): 
-
         41          """ Parse the input options """ 
- 42          from optparse import OptionParser 
- 43          import diffpy.srrietveld.applications.srhelp as srhelp 
- 44          # init 
- 45          optparser = OptionParser() 
- 46   
- 47          # define the input options, will be removed to a common place 
- 48          optparser.add_option("-i", "--instrument", dest="instrument", 
- 49                  help = srhelp.helpstring["instrument"]) 
- 50          optparser.add_option("-s", "--structure" , dest="structure", 
- 51                  help = srhelp.helpstring["structure"]) 
- 52          optparser.add_option("-d", "--data", dest="datafile", 
- 53                  help = srhelp.helpstring["data"]) 
- 54          optparser.add_option("-r", "--strategy", dest="strategyfile", 
- 55                  help = srhelp.helpstring["strategy"], default="calibrated") 
- 56          optparser.add_option("--bank", dest="banks", 
- 57                  help = srhelp.helpstring["bank"], default = "1") 
- 58          optparser.add_option("-b", "--background", dest="backgroundfile", 
- 59                  help = srhelp.helpstring["background"]) 
- 60          optparser.add_option("-e", "--engine", dest="engine", 
- 61                  help = srhelp.helpstring["engine"], default="fullprof") 
- 62          optparser.add_option("--excludedregion", dest = "excludedregionfile", 
- 63                  help = srhelp.helpstring["excludedregion"]) 
- 64          optparser.add_option("--infofile", dest="infofile", 
- 65                  help="Information file.  Information file contains 2 columns for" + 
- 66                  "datafile and value of environment quantity (e.g. temperature)") 
- 67          optparser.add_option("--datadirectory", dest="datadirectory", 
- 68                  help="Directory of source data file") 
- 69   
- 70          (options, args) = optparser.parse_args() 
- 71          self.options = options 
- 72          return 
-
         73   
-
         74 -    def processInputs(self): 
-
         75          """ Process input files and pass into dictionaries. """ 
- 76          from diffpy.srrietveld.utility import checkFormat, parseXYToList 
- 77          from diffpy.srrietveld.convert.gsasinstparser import GSASInstFile 
- 78          from diffpy.srrietveld.addon.datafile import DataFileConverter, createDataDict 
- 79          from diffpy.srrietveld.addon.strategyfile import StrategyFileParser 
- 80          from diffpy.srrietveld.addon.structurefile import StructureFileConverter 
- 81   
- 82          # Set engine and banklist 
- 83          self.engine = self.options.engine.lower() 
- 84          try: 
- 85              self.banklist = self.options.banks.split(",") 
- 86          except: 
- 87              self.banklist = self.options.banks 
- 88   
- 89          # Instrument info process 
- 90          instrumentfile = self.options.instrument 
- 91          instfileformat = checkFormat(instrumentfile) 
- 92          if instfileformat == "xml": 
- 93              instxml = InstrumentXML(instrumentfile) 
- 94              self.instdict = instxml.parseInstrumentXML() 
- 95          elif instfileformat in ["iparm", "prm"]: 
- 96              gsasinst = GSASInstFile(instrumentfile, self.banklist, self.engine) 
- 97              self.instdict = gsasinst.parseInstInfo() 
- 98          else: 
- 99              raise NotImplementedError 
-100   
-101          # Structure info process 
-102          structurefile = self.options.structure 
-103          strufileformat = checkFormat(structurefile) 
-104          if strufileformat == "xml": 
-105              struxml = StructureXML(structurefile) 
-106              self.strudict = struxml.parseStructureXML() 
-107          elif strufileformat == "cif": 
-108              strufile = StructureFileConverter(structurefile) 
-109              self.strudict = strufile.cifToDict() 
-110          else: 
-111              raise NotImplementedError 
-112   
-113          # Data file process 
-114          datafile = self.options.datafile 
-115          infofile = self.options.infofile 
-116          if datafile != None: 
-117              # single dataset refinement 
-118              self.datadict = {1:{"Name": datafile}} 
-119          elif infofile != None: 
-120              # multiple datasets refinement 
-121              datadirectory = self.options.datadirectory 
-122              self.datadict = createDataDict(infofile, datadirectory) 
-123          else: 
-124              raise NotImplementedError 
-125   
-126          for key, value in self.datadict.items(): 
-127              datafilename = value["Name"] 
-128              dataformat = checkFormat(datafilename) 
-129              datafileconverter = DataFileConverter(datafilename, instrumentfile, self.banklist) 
-130              for bankid in self.banklist: 
-131                  if self.engine == "gsas" and dataformat in ["dat", "chi"]: 
-132                      gsasfile = datafilename.split(dataformat)[0] + "gsa" 
-133                      datafileconverter.toGSASFile(datafilename, gsasfile, int(bankid)) 
-134                  elif self.engine == "gsas" and dataformat in ["gsa", "gda", "raw"]: 
-135                      datafileconverter.readGSASFile(datafilename, int(bankid)) 
-136                  elif self.engine == "fullprof" and dataformat in ["xye", "chi", "gsa", "gda", "raw"]: 
-137                      fullproffile = datafilename.split(dataformat)[0] + "dat" 
-138                      datafileconverter.toFPFile(datafilename, fullproffile, int(bankid)) 
-139                  else: 
-140                      raise NotImplementedError 
-141              self.datadict[key] = datafileconverter.datadict 
-142   
-143          # Refine Strategy file process 
-144          strategyfile = self.options.strategyfile 
-145          strategyfileformat = checkFormat(strategyfile) 
-146          if strategyfileformat == "txt": 
-147              strategytxt = StrategyFileParser(strategyfile) 
-148              self.strategy = strategytxt.parseTXTFormat() 
-149          else: 
-150              raise NotImplementedError 
-151   
-152          # Optional files: background and excludedregion: 
-153          backgroundfile = self.options.backgroundfile 
-154          if backgroundfile != None: 
-155              bkgdformat = checkFormat(backgroundfile) 
-156              if bkgdformat == "xml": 
-157                  bkgd = BackgroundXML(backgroundfile) 
-158                  bkgd.addToInstDict(self.instdict) 
-159              elif bkgdformat == "dat": 
-160                  self.bkgdlist = parseXYToList(backgroundfile) 
-161              else: 
-162                  raise NotImplementedError 
-163          excludedregionfile = self.options.excludedregionfile 
-164          if self.options.excludedregionfile != None: 
-165              exre = ExcludedRegionXML(excludedregionfile) 
-166              self.exredict = exre.xmlToDict(exre.exrexml) 
-167          return 
-
        168   
-
        169 -    def run(self): 
-
        170          """ Main controller of the refinement """ 
-171          from diffpy.srrietveld.buildfit import BuildFit 
-172          from diffpy.refinementdata.plot import backend 
-173   
-174          backend.use('wx') 
-175   
-176          # 1. Build Fit Object 
-177          sortedkeys = sorted(self.datadict.keys()) 
-178          buildfit = BuildFit(self.engine, self.strudict, self.instdict, 
-179                               self.datadict[sortedkeys[0]]) 
-180          srrfit = buildfit.buildFit() 
-181   
-182          # 2. Add optional background and excludedregion 
-183          if hasattr(self, "bkgdlist"): 
-184              buildfit.addBkgdPoints(srrfit, self.bkgdlist) 
-185          if hasattr(self, "exredict"): 
-186              buildfit.addExre(srrfit, self.exredict) 
-187   
-188          # 3. check whether fit is ready 
-189          srrfit.validate() 
-190   
-191          # force to rewrite everytime 
-192          project = Project('temp.srr','w') 
-193   
-194          # Also create a fitlist to build a manager 
-195          fitlist = [] 
-196   
-197          # 4. Refine 
-198          datafilenum = len(self.datadict.keys()) 
-199          if datafilenum > 1: 
-200              datalist = [] 
-201              fit = project.importEngineFit(srrfit, 'f1', shape = (datafilenum, )) 
-202              fitlist.append(fit) 
-203              datalist.append(self.datadict[sortedkeys[0]]) 
-204              i = 1 
-205              for v in sortedkeys[1:]: 
-206                  patterns = fit.fitdata.getObject("Pattern") 
-207                  pattern = patterns.getObject(0) 
-208                  text = pattern.get('Datafile') 
-209                  text[i] = self.datadict[v][1]["Name"] 
-210                  # also update: 
-211                  fitlist.append(FitRT(project, fit.fitdata, i)) 
-212                  i += 1 
-213                  datalist.append(self.datadict[v]) 
-214   
-215              project.plot(fit.fitdata, 0) 
-216              # Now create a manager to run the refinement. 
-217              manager = SeqManager(fitlist, datalist,  self.strategy) 
-218          else: 
-219              fitrt = project.importEngineFit(srrfit, 'f1') 
-220              fitlist.append(fitrt) 
-221              #project.plot(fitrt.fit) 
-222              manager = Manager(fitlist, self.strategy) 
-223          project.managers.append(manager) 
-224          # run fit 
-225          project.start() 
-226          backend.show() 
-227          # save project 
-228          project.close() 
-229          return 
-
        230   
-231   
-
        232 -def applydata(fit, datadict): 
-
        233      '''Expand fit to a fit array, with different data set 
-234   
-235      fit -- a project fit object 
-236      datadict -- a dictionary of data files 
-237      ''' 
-238      pass 
-
        239   
-
        240 -def main(): 
-
        241      ReadInput() 
-242      return 
-
        243   
-
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        -
        - -

        Class ReadInput

        source code

        -

        Parse input options and read xml files

        - - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        parseOptions(self)
        - Parse the input options        		 - source code - -
        - -
        -   - - - - - - -
        processInputs(self)
        - Process input files and pass into dictionaries.        		 - source code - -
        - -
        -   - - - - - - -
        run(self)
        - Main controller of the refinement        		 - source code - -
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        Module srhelp

        source code

        - - - - - - - - - -
        - Functions
        -   - - - - - - -
        getHelp(optionname)
        - Get help string for an option name        		 - source code - -
        - -
        - - - - - - - - - - - - - - - -
        - Variables
        -   - - __id__ = '$Id: srhelp.py 5658 2010-07-09 20:05:34Z juhas $' -
        -   - - __package__ = None -
        -   - - helpstring = {'background': 'Name of Data File Containing Back... -
        - - - - - - -
        - Function Details
        - -
        - -
        - - -
        -

        getHelp(optionname) -

        -         		source code  -
        - -

        Get help string for an option name

        -

        Arguement:

        -
          -
        • - optionname : str, name of an option supported -
          • -
        -

        Return : str

        -
        -
        -
        -
        -
        - - - - - - -
        - Variables Details
        - -
        - -
        -

        helpstring

        - -
        -
        -
        -
        Value:
        - 
        -{'background': 'Name of Data File Containing Background Parameter or B\
-ackground XML file',
- 'bank': 'Bank(s) to refine in T.O.F. data',
- 'data': 'Full-path Name of Data File',
- 'engine': 'Type of Refinement Engine (i.e.,Refinement Backend). Fullp\
-rof or GSAS',
- 'excludedregion': 'Name of XML file to Indicate User Specified Exclud\
-ed Region',
-...
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        Source Code for Module diffpy.srrietveld.applications.srhelp

        -
        - 1  ############################################################################## 
- 2  # 
- 3  # diffpy.srrietveld by DANSE Diffraction group 
- 4  #                   Simon J. L. Billinge 
- 5  #                   (c) 2009 Trustees of the Columbia University 
- 6  #                   in the City of New York.  All rights reserved. 
- 7  # 
- 8  # File coded by:    Wenduo Zhou, Peng Tian 
- 9  # 
-10  # See AUTHORS.txt for a list of people who contributed. 
-11  # See LICENSE.txt for license information. 
-12  # 
-13  ############################################################################## 
-14   
-15  __id__ = "$Id: srhelp.py 5658 2010-07-09 20:05:34Z juhas $" 
-16   
-17  helpstring = { 
-18          "instrument": "(1) Name of Instrument iparm file\n(2) Name of Instrument XML File", 
-19          "structure": "Name of CIF File (.cif) or SrRietveld Crystal Structure XML File (.xml)", 
-20          "data": "Full-path Name of Data File", 
-21          "strategy": "(1) Name of Refinement Strategy or (2) Name of SrRietveld Refinement Strategy File", 
-22          "bank": "Bank(s) to refine in T.O.F. data", 
-23          "background": "Name of Data File Containing Background Parameter or Background XML file", 
-24          "engine": "Type of Refinement Engine (i.e.,Refinement Backend). Fullprof or GSAS", 
-25          "excludedregion": "Name of XML file to Indicate User Specified Excluded Region" 
-26      } 
-27   
-
        28 -def getHelp(optionname): 
-
        29      """ Get help string for an option name 
-30   
-31      Arguement: 
-32        - optionname  :   str, name of an option supported 
-33   
-34      Return          :   str 
-35      """ 
-36      try: 
-37          resultstring = helpstring[optionname] 
-38      except KeyError, err: 
-39          errmsg = "Help string for option %-20s does not exist" 
-40          raise NotImplementedError, errmsg 
-41   
-42      return resultstring 
-
        43   
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        Module srrgui

        source code

        -

        SrRietveld GUI entry point.

        - - - - - - - - - - - - - - - - - - - - - - -
        - Functions
        -   - - - - - - -
        usage()
        - Show usage info.        		 - source code - -
        - -
        -   - - - - - - -
        version() - source code - -
        - -
        -   - - - - - - -
        loadConfig(cfgFile=None)
        - Load the non ui global environment from the configuration files If - there is no config, files stored in home directory, then restore to - default        		 - source code - -
        - -
        -   - - - - - - -
        processArguments(argv1)
        - Process command line arguments and store results in srrguiglobals.        		 - source code - -
        - -
        -   - - - - - - -
        main()
        - Main entry point to SrRietveld.        		 - source code - -
        - -
        - - - - - - - - - - - - -
        - Variables
        -   - - __id__ = '$Id: srrgui.py 6500 2011-04-08 14:20:54Z yshang $' -
        -   - - __package__ = 'diffpy.srrietveld.applications' -
        -

        Imports: - sys, - os, - getopt, - GLOBALS, - SrrValueError -


        - - - - - - -
        - Function Details
        - -
        - -
        - - -
        -

        processArguments(argv1) -

        -         		source code  -
        - -

        Process command line arguments and store results in srrguiglobals. - This method updates cmdopts, cmdargs and dbopts attributes in the - srrguiglobals module.

        -

        argv1 -- list of command line arguments excluding the executable

        -

        Returns boolean flag to indicate if the execution should continue. The - flag is False, when options contain --help or --version. Raises - GetoptError for invalid options. Raises ValueError for more than one - project file arguments or when project is not a valid file.

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        Source Code for Module diffpy.srrietveld.applications.srrgui

        -
        -  1  #!/usr/bin/env python 
-  2  ############################################################################## 
-  3  # 
-  4  # diffpy.srrietveld by DANSE Diffraction group 
-  5  #                   Simon J. L. Billinge 
-  6  #                   (c) 2010 Trustees of the Columbia University 
-  7  #                   in the City of New York.  All rights reserved. 
-  8  # 
-  9  # File coded by:    Pavol Juhas, Peng Tian 
- 10  # 
- 11  # See AUTHORS.txt for a list of people who contributed. 
- 12  # See LICENSE.txt for license information. 
- 13  # 
- 14  ############################################################################## 
- 15   
- 16   
- 17  """SrRietveld GUI entry point. 
- 18  """ 
- 19   
- 20  # version 
- 21  __id__ = "$Id: srrgui.py 6500 2011-04-08 14:20:54Z yshang $" 
- 22   
- 23   
- 24  import sys 
- 25  import os 
- 26  import getopt 
- 27  import diffpy.srrietveld.gui.srrguiglobals as GLOBALS 
- 28  from diffpy.srrietveld.exceptions import SrrValueError 
- 29   
- 30  _help_message = """\ 
- 31  SrRietveld - perform and analyse a series of Rietveld refinements. 
- 32  Usage:  SCRIPTNAME [options] prototype.EXP 
- 33          SCRIPTNAME [options] prototype.PCR 
- 34  to start a new project based on prototype GSAS or FullProf refinement or 
- 35          SCRIPTNAME project.srr 
- 36  to open an existing SrRietveld project. 
- 37   
- 38  Options: 
- 39      -h, --help      display this help and exit 
- 40      -v, --version   show program version and exit 
- 41      -d, --debug     debug mode - temporary files are not removed, standard 
- 42                      output is not captured to the GUI window. 
- 43  """.rstrip() 
- 44   
-
         45 -def usage(): 
-
         46      """Show usage info. 
- 47      """ 
- 48      myname = os.path.basename(sys.argv[0]) 
- 49      msg = _help_message.replace("SCRIPTNAME", myname) 
- 50      print msg 
- 51      return 
-
         52   
- 53   
-
         54 -def version(): 
-
         55      from diffpy.srrietveld import __version__ 
- 56      print "SrRietveld", __version__ 
- 57      return 
-
         58   
-
         59 -def loadConfig(cfgFile = None): 
-
         60      '''Load the non ui global environment from the configuration files 
- 61      If there is no config, files stored in home directory, then restore to default''' 
- 62       
- 63      if cfgFile is None: 
- 64          cfgFile = GLOBALS.defaultCfgPath('default.cfg') 
- 65       
- 66      if os.path.exists(cfgFile): 
- 67          configPath = cfgFile 
- 68      else: 
- 69          configPath = GLOBALS.defaultCfgPath('default.cfg') 
- 70       
- 71      GLOBALS.config.read(configPath) 
- 72   
- 73      # get the options for refinement 
- 74      GLOBALS.isStrategyEnabled = \ 
- 75          GLOBALS.config.getboolean('refinement','enable_strategy') 
- 76      GLOBALS.isStrategyEnabledOnDivergence = \ 
- 77          GLOBALS.config.getboolean('refinement','enable_strategy_when_diverge') 
- 78       
- 79      GLOBALS.gsasPath = GLOBALS.config.get('directories','gsas_path') 
- 80      GLOBALS.fullprofPath = GLOBALS.config.get('directories','fullprof_path') 
- 81       
- 82      GLOBALS.workingDir = GLOBALS.config.get('directories', 'working_directory') 
- 83      GLOBALS.changeWithProjectFile = GLOBALS.config.getboolean('directories', 'change_with_project_file') 
- 84   
- 85      # check if the workingDir is None or does not exist  
- 86      isGoodWD = True 
- 87      if not GLOBALS.workingDir or not os.path.exists(GLOBALS.workingDir): 
- 88          isGoodWD = False 
- 89           
- 90      if not isGoodWD: 
- 91          GLOBALS.workingDir = os.getcwd() 
- 92      #os.chdir(GLOBALS.workingDir) 
- 93               
- 94      return 
-
         95   
-
         96 -def processArguments(argv1): 
-
         97      '''Process command line arguments and store results in srrguiglobals. 
- 98      This method updates cmdopts, cmdargs and dbopts attributes in the 
- 99      srrguiglobals module. 
-100   
-101      argv1   -- list of command line arguments excluding the executable 
-102   
-103      Returns boolean flag to indicate if the execution should continue. 
-104      The flag is False, when options contain --help or --version. 
-105      Raises GetoptError for invalid options. 
-106      Raises ValueError for more than one project file arguments or 
-107      when project is not a valid file. 
-108      ''' 
-109      # default parameters 
-110      opts, args = getopt.gnu_getopt(sys.argv[1:], "hvd", 
-111                  ["help", "version", "debug"] ) 
-112      # process options 
-113      proceed = True 
-114      for o, a in opts: 
-115          if o in ("-h", "--help"): 
-116              usage() 
-117              proceed = False 
-118          elif o in ("-v", "--version"): 
-119              version() 
-120              proceed = False 
-121          elif o in ('-d', '--debug'): 
-122              GLOBALS.isDebug = True 
-123              proceed = True 
-124      GLOBALS.cmdopts = opts 
-125      # bail-out here if options contain --help or --version 
-126      if not proceed:     return False 
-127      # otherwise continue checking arguments 
-128      if len(args) == 1 and not os.path.isfile(args[0]): 
-129          emsg = "Project file %s does not exist." % args[0] 
-130          raise ValueError(emsg) 
-131      elif len(args) > 1: 
-132          emsg = "Too many project files." 
-133          raise ValueError(emsg) 
-134      # ready to go 
-135      GLOBALS.cmdargs = args 
-136      return proceed 
-
        137   
-138   
-
        139 -def main(): 
-
        140      '''Main entry point to SrRietveld. 
-141      ''' 
-142      # process arguments 
-143      proceed = False 
-144      try: 
-145          loadConfig(GLOBALS.cfgFileName) 
-146      except: 
-147          loadConfig() 
-148          __msg = 'Can not load the configuration file: %s. The default configurations are loaded. ' 
-149          print __msg 
-150           
-151      try: 
-152          proceed = processArguments(sys.argv[1:]) 
-153      except (getopt.GetoptError, ValueError), err: 
-154          print >> sys.stderr, err 
-155          sys.exit(1) 
-156      # bail out when no gui is needed 
-157      if not proceed: 
-158          sys.exit() 
-159      # initialize gui 
-160      import diffpy.srrietveld.gui.main as guimain 
-161      # Catch control errors, that may happen during project 
-162      # loading, before the GUI gets running 
-163      from diffpy.srrietveld.exceptions import SrrError 
-164      try: 
-165          guimain.main() 
-166      except SrrError, err: 
-167          print >> sys.stderr, err 
-168          sys.exit(1) 
-169      return 
-
        170   
-171   
-172  if __name__ == "__main__": 
-173      main() 
-174   
-175  # End of file 
-176   
-
        -
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        Module atom

        source code

        -

        This package contains the Atom class in SrRietveld, which is an script - interface to access the atom information

        - - - - - - - - - - -
        - Classes
        -   - - Atom
        - Atom is a Refinable component which contains multiple parameters. -
        - - - - - - - - - - - - - - - -
        - Variables
        -   - - PARAMNAMES = {'fullprof': {'Biso': 'AtomicDisplacementFactor.B... -
        -   - - __id__ = '$Id: atom.py 6726 2011-08-25 09:36:23Z yshang $' -
        -   - - __package__ = 'diffpy.srrietveld' -
        -

        Imports: - Refinable -


        - - - - - - -
        - Variables Details
        - -
        - -
        -

        PARAMNAMES

        - -
        -
        -
        -
        Value:
        - 
        -{'fullprof': {'Biso': 'AtomicDisplacementFactor.Biso',
-              'Rp': 'Rp',
-              'Rwp': 'Rwp',
-              'Tmax': 'Thmin',
-              'Tmin': 'Thmax',
-              'Uiso': 'AtomicDisplacementFactor.Uiso',
-              'X': 'X',
-              'Y': 'Y',
-...
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        Source Code for Module diffpy.srrietveld.atom

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2009 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Yingrui Shang 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14  """ 
- 15  This package contains the Atom class in SrRietveld, which is an script interface 
- 16  to access the atom information 
- 17  """ 
- 18   
- 19  __id__ = "$Id: atom.py 6726 2011-08-25 09:36:23Z yshang $" 
- 20   
- 21  from diffpy.refinementdata.refinable import Refinable 
- 22  from diffpy.srrietveld.paramnames import PARAMNAMES 
- 23   
-
         24 -class Atom(Refinable): 
-
         25       
- 26      """Atom is a Refinable component which contains multiple parameters. 
- 27      A composite function may also contain other functions. 
- 28       
- 29      data member: 
- 30           
- 31          formula: a string of the function definition in C style 
- 32          variables: a space separated string of all variables in the formula 
- 33      """ 
-
         34 -    def __init__(self, owner, name=None, handle=None, formula=None, variables=None, shape=None): 
-
         35          """Initialization. 
- 36           
- 37          @type owner:    a data project 
- 38          @param owner:    the owner, which is usually a refinement. 
- 39          @type name:    string 
- 40          @param name     the name of the pattern 
- 41          @type handle:    a HDF5Handle object 
- 42          @param handle: a HDF5Handle pointing to the underlying HDF5 node.   
- 43          @type formula:    string 
- 44          @param formula:    a string of the function definition in C style 
- 45          @type variables:    a space separated string 
- 46          @param variables:    a space separated string of all variables  
- 47   
- 48          A name is passed to the initialization method when creating a node. 
- 49           
- 50          A handle is passed to the inialization method in two cases: 
- 51              1.  when loading from a HDF5 file; 
- 52              2.  when creating a HDF5 file but the object is a hard link to  
- 53                  a preexisiting one. 
- 54                   
- 55          In the case when both name and handle are given, name will be simply ignored. 
- 56          In the case when neither name nor handle is given, an exception will be raised. 
- 57           
- 58          Generally, in the scripting interface, users do not have to call this  
- 59          constructor directly 
- 60          """ 
- 61          Refinable.__init__(self, owner, name, handle, shape) 
- 62          return 
-
         63       
- 64       
-
         65 -    def getEngineType(self): 
-
         66          '''Get the engine type for this refinement 
- 67           
- 68          @return:    the string of the engine type, for example I{"gsas"} or I{"fullprof"}''' 
- 69           
- 70          return self.owner.owner.getEngineType() 
-
         71       
-
         72 -    def getBiso(self): 
-
         73          ''' 
- 74          Get the Biso values 
- 75           
- 76          @return: the Biso values 
- 77          ''' 
- 78          return self.getByPath(PARAMNAMES[self.getEngineType()]["Biso"]) 
-
         79       
-
         80 -    def getBisoSigma(self): 
-
         81          ''' 
- 82          Get the Biso standard deviations 
- 83           
- 84          @return: the Biso standard deviations 
- 85          ''' 
- 86          return self.getSigmaByPath(PARAMNAMES[self.getEngineType()]["Biso"]) 
-
         87       
-
         88 -    def getName(self): 
-
         89          ''' 
- 90          Get atom name. The atom name is the atom type with the id number  
- 91           
- 92          @return: the atom name string 
- 93          ''' 
- 94          return self.getByPath(PARAMNAMES[self.getEngineType()]["name"]).first() 
-
         95           
-
         96 -    def getOccupation(self): 
-
         97          ''' 
- 98          Get the occupations of the atom 
- 99           
-100          @return: the occupation values 
-101          ''' 
-102          return self.getByPath(PARAMNAMES[self.getEngineType()]["occupation"]) 
-
        103       
-
        104 -    def getType(self): 
-
        105          ''' 
-106          Get atom type 
-107           
-108          @return: the atoms type 
-109          ''' 
-110          return self.getByPath(PARAMNAMES[self.getEngineType()]["type"]).first() 
-
        111           
-
        112 -    def getUiso(self): 
-
        113          ''' 
-114          Get the Uiso values 
-115           
-116          @return: the Uiso values 
-117          ''' 
-118          return self.getByPath(PARAMNAMES[self.getEngineType()]["Uiso"]) 
-
        119       
-
        120 -    def getUisoSigma(self): 
-
        121          ''' 
-122          Get the Uiso standard deviations 
-123           
-124          @return: the Uiso standard deviations 
-125          ''' 
-126          return self.getSigmaByPath(PARAMNAMES[self.getEngineType()]["Uiso"]) 
-
        127       
-
        128 -    def getX(self): 
-
        129          ''' 
-130          Get the x fractional coordinates 
-131           
-132          @return: the x fractional coordinate values 
-133          ''' 
-134          return self.getByPath(PARAMNAMES[self.getEngineType()]["X"]) 
-
        135       
-
        136 -    def getXSigma(self): 
-
        137          ''' 
-138          Get the x fractional coordinate standard deviations 
-139           
-140          @return: the x fractional coordinate standard deviations 
-141          ''' 
-142          return self.getSigmaByPath(PARAMNAMES[self.getEngineType()]["X"]) 
-
        143           
-
        144 -    def getY(self): 
-
        145          ''' 
-146          Get the y fractional coordinates 
-147           
-148          @return: the y fractional coordinate values 
-149          ''' 
-150          return self.getByPath(PARAMNAMES[self.getEngineType()]["Y"]) 
-
        151       
-
        152 -    def getYSigma(self): 
-
        153          ''' 
-154          Get the y fractional coordinate standard deviations 
-155           
-156          @return: the y fractional coordinate standard deviations 
-157          ''' 
-158          return self.getSigmaByPath(PARAMNAMES[self.getEngineType()]["Y"]) 
-
        159           
-
        160 -    def getZ(self): 
-
        161          ''' 
-162          Get the z fractional coordinates 
-163           
-164          @return: the z fractional coordinate values 
-165          ''' 
-166          return self.getByPath(PARAMNAMES[self.getEngineType()]["Z"]) 
-
        167           
-
        168 -    def getZSigma(self): 
-
        169          ''' 
-170          Get the z fractional coordinate standard deviations 
-171           
-172          @return: the z fractional coordinate standard deviations 
-173          ''' 
-174          return self.getSigmaByPath(PARAMNAMES[self.getEngineType()]["Z"]) 
-
        175   
-
        -
        - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:58 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.atom.Atom-class.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.atom.Atom-class.html deleted file mode 100644 index cab57f88..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.atom.Atom-class.html +++ /dev/null @@ -1,859 +0,0 @@ - - - - - diffpy.srrietveld.atom.Atom - - - - - - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module atom :: - Class Atom - - - - - -
        [frames] | no frames]
        -
        - -

        Class Atom

        source code

        -
        -                       object --+        
-                                |        
-refinementdata.hdf5.object.Object --+    
-                                    |    
-   refinementdata.refinable.Refinable --+
-                                        |
-                                       Atom
-
        - -
        -
        -Atom is a Refinable component which contains multiple parameters.
-A composite function may also contain other functions.
-
-data member:
-    
-    formula: a string of the function definition in C style
-    variables: a space separated string of all variables in the formula
-
-
        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - owner, - name=None, - handle=None, - formula=None, - variables=None, - shape=None)
        - Initialization.        		 - source code - -
        - -
        -   - - - - - - -
        getBiso(self)
        - Get the Biso values        		 - source code - -
        - -
        -   - - - - - - -
        getBisoSigma(self)
        - Get the Biso standard deviations        		 - source code - -
        - -
        -   - - - - - - -
        getEngineType(self)
        - Get the engine type for this refinement        		 - source code - -
        - -
        -   - - - - - - -
        getName(self)
        - Get atom name.        		 - source code - -
        - -
        -   - - - - - - -
        getOccupation(self)
        - Get the occupations of the atom        		 - source code - -
        - -
        -   - - - - - - -
        getType(self)
        - Get atom type        		 - source code - -
        - -
        -   - - - - - - -
        getUiso(self)
        - Get the Uiso values        		 - source code - -
        - -
        -   - - - - - - -
        getUisoSigma(self)
        - Get the Uiso standard deviations        		 - source code - -
        - -
        -   - - - - - - -
        getX(self)
        - Get the x fractional coordinates        		 - source code - -
        - -
        -   - - - - - - -
        getXSigma(self)
        - Get the x fractional coordinate standard deviations        		 - source code - -
        - -
        -   - - - - - - -
        getY(self)
        - Get the y fractional coordinates        		 - source code - -
        - -
        -   - - - - - - -
        getYSigma(self)
        - Get the y fractional coordinate standard deviations        		 - source code - -
        - -
        -   - - - - - - -
        getZ(self)
        - Get the z fractional coordinates        		 - source code - -
        - -
        -   - - - - - - -
        getZSigma(self)
        - Get the z fractional coordinate standard deviations        		 - source code - -
        - -
        -

        Inherited from refinementdata.refinable.Refinable: - addHistory, - addHistoryByPath, - addSigma, - addSigmaByPath, - findRefinement, - getHistory, - getHistoryByPath, - getSigma, - getSigmaByPath, - listHistories, - listRefined, - loadLocalObjects, - removeHistory, - update -

        -

        Inherited from refinementdata.hdf5.object.Object: - addObject, - copy, - copyMeta, - delete, - exportFile, - get, - getAttr, - getByPath, - getFlatIndex, - getMetaData, - getMultiDimIndex, - getObject, - getPyObj, - hasAttr, - hasMeta, - importFile, - isDescendant, - list, - listAttrs, - listNames, - listObjects, - load, - loadLocalData, - loadObject, - move, - range, - readStr, - removeObject, - rename, - repeat, - replicate, - reshape, - save, - set, - setAttr, - setByPath, - setLabels, - setPyObj, - unset, - unsetAttr, - writeStr -

        -

        Inherited from object: - __delattr__, - __format__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__, - __sizeof__, - __str__, - __subclasshook__ -

        -
        - - - - - - - - - -
        - Properties
        -

        Inherited from refinementdata.hdf5.object.Object: - labels, - name, - ndim, - path -

        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - owner, - name=None, - handle=None, - formula=None, - variables=None, - shape=None) -
        (Constructor) -

        -         		source code  -
        - -

        Initialization.

        -
        -
        Parameters:
        -
          -
        • owner (a data project) - the owner, which is usually a refinement.
          • -
        • handle (a HDF5Handle object) - a HDF5Handle pointing to the underlying HDF5 node.
          • -
        • formula (string) - a string of the function definition in C style
          • -
        • variables (a space separated string) - a space separated string of all variables -

          A name is passed to the initialization method when creating a - node.

          -

          A handle is passed to the inialization method in two - cases:

          -
            -
          1. - when loading from a HDF5 file; -
            2. -
          2. - when creating a HDF5 file but the object is a hard link to a - preexisiting one. -
            3. -
          -

          In the case when both name and handle are given, name will be - simply ignored. In the case when neither name nor handle is - given, an exception will be raised.

          -

          Generally, in the scripting interface, users do not have to - call this constructor directly

          • -
        • name (string @param name the name of the pattern)
          • -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        getBiso(self) -

        -         		source code  -
        - -

        Get the Biso values

        -
        -
        Returns:
        -
        the Biso values
        -
        -
        -
        - -
        - -
        - - -
        -

        getBisoSigma(self) -

        -         		source code  -
        - -

        Get the Biso standard deviations

        -
        -
        Returns:
        -
        the Biso standard deviations
        -
        -
        -
        - -
        - -
        - - -
        -

        getEngineType(self) -

        -         		source code  -
        - -

        Get the engine type for this refinement

        -
        -
        Returns:
        -
        the string of the engine type, for example - "gsas" or "fullprof"
        -
        -
        -
        - -
        - -
        - - -
        -

        getName(self) -

        -         		source code  -
        - -

        Get atom name. The atom name is the atom type with the id number

        -
        -
        Returns:
        -
        the atom name string
        -
        -
        -
        - -
        - -
        - - -
        -

        getOccupation(self) -

        -         		source code  -
        - -

        Get the occupations of the atom

        -
        -
        Returns:
        -
        the occupation values
        -
        -
        -
        - -
        - -
        - - -
        -

        getType(self) -

        -         		source code  -
        - -

        Get atom type

        -
        -
        Returns:
        -
        the atoms type
        -
        -
        -
        - -
        - -
        - - -
        -

        getUiso(self) -

        -         		source code  -
        - -

        Get the Uiso values

        -
        -
        Returns:
        -
        the Uiso values
        -
        -
        -
        - -
        - -
        - - -
        -

        getUisoSigma(self) -

        -         		source code  -
        - -

        Get the Uiso standard deviations

        -
        -
        Returns:
        -
        the Uiso standard deviations
        -
        -
        -
        - -
        - -
        - - -
        -

        getX(self) -

        -         		source code  -
        - -

        Get the x fractional coordinates

        -
        -
        Returns:
        -
        the x fractional coordinate values
        -
        -
        -
        - -
        - -
        - - -
        -

        getXSigma(self) -

        -         		source code  -
        - -

        Get the x fractional coordinate standard deviations

        -
        -
        Returns:
        -
        the x fractional coordinate standard deviations
        -
        -
        -
        - -
        - -
        - - -
        -

        getY(self) -

        -         		source code  -
        - -

        Get the y fractional coordinates

        -
        -
        Returns:
        -
        the y fractional coordinate values
        -
        -
        -
        - -
        - -
        - - -
        -

        getYSigma(self) -

        -         		source code  -
        - -

        Get the y fractional coordinate standard deviations

        -
        -
        Returns:
        -
        the y fractional coordinate standard deviations
        -
        -
        -
        - -
        - -
        - - -
        -

        getZ(self) -

        -         		source code  -
        - -

        Get the z fractional coordinates

        -
        -
        Returns:
        -
        the z fractional coordinate values
        -
        -
        -
        - -
        - -
        - - -
        -

        getZSigma(self) -

        -         		source code  -
        - -

        Get the z fractional coordinate standard deviations

        -
        -
        Returns:
        -
        the z fractional coordinate standard deviations
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:57 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.bugreport-module.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.bugreport-module.html deleted file mode 100644 index 1f1cbc44..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.bugreport-module.html +++ /dev/null @@ -1,292 +0,0 @@ - - - - - diffpy.srrietveld.bugreport - - - - - - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module bugreport - - - - - -
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        -
        - -

        Module bugreport

        source code

        -

        Routines for submitting bugreport through www.diffpy.org.

        - - - - - - - - - - - - - -
        - Functions
        -   - - - - - - -
        getFormData(content, - index=0)
        - Extract action attribute from the first form in HTML document.        		 - source code - -
        - -
        -   - - - - - - -
        submitBugReport(formfields)
        - Fill in and submit bugreport form at FORM_URL.        		 - source code - -
        - -
        - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - Variables
        -   - - FORM_ENCPW = 'LPR3rU9s' -
        -   - - FORM_REALM = 'diffpy' -
        -   - - FORM_URL = 'http://www.diffpy.org/bugreport/srrietveld/' -
        -   - - FORM_USER = 'diffuser' -
        -   - - ROOT_URL = 'http://www.diffpy.org/' -
        -   - - __id__ = '$Id: bugreport.py 6462 2011-04-02 00:41:29Z yshang $' -
        -   - - __package__ = 'diffpy.srrietveld' -
        -

        Imports: - HTMLParser, - SrrIOError, - SrrValueError, - urlparse -


        - - - - - - -
        - Function Details
        - -
        - -
        - - -
        -

        getFormData(content, - index=0) -

        -         		source code  -
        - -

        Extract action attribute from the first form in HTML document.

        -

        content -- HTML code index -- zero-based index of the form in the - HTML document

        -

        Return a tuple of (formattr, formdata) dictionaries, where formattr -- - has all the attributes of the <form> element formdata -- has all - the contain input field names and their values

        -
        -
        -
        -
        - -
        - -
        - - -
        -

        submitBugReport(formfields) -

        -         		source code  -
        - - 
        -Fill in and submit bugreport form at FORM_URL.
-The post url is obtained by parsing the first HTML form.
-
-formfields -- dictionary containing the keys.  When optional
-              fields are not specified, use defaults as listed:
-
-              "reporter"    optional, ["anonymous"]
-              "summary"     required
-              "description" required
-              "component"   optional, ["srrietveld"]
-              "version"     optional, [current version of SrRietveld]
-              "traceback"   optional, [""]
-
-              All values get stripped from leading and trailing spaces.
-              Any other keys in formfields are ignored.
-
-No return value.
-Raise KeyError when formfields does not have required keys.
-Raise IOError on failed posting.
-
-
        -
        -
        -
        -
        -
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        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:57 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.bugreport-pysrc.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.bugreport-pysrc.html deleted file mode 100644 index 23e33f5a..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.bugreport-pysrc.html +++ /dev/null @@ -1,321 +0,0 @@ - - - - - diffpy.srrietveld.bugreport - - - - - - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module bugreport - - - - - -
        [frames] | no frames]
        -
        -

        Source Code for Module diffpy.srrietveld.bugreport

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2010 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Pavol Juhas, Peng Tian 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14   
- 15  """Routines for submitting bugreport through www.diffpy.org. 
- 16  """ 
- 17   
- 18  # version 
- 19  __id__ = "$Id: bugreport.py 6462 2011-04-02 00:41:29Z yshang $" 
- 20   
- 21  import urlparse 
- 22  import HTMLParser 
- 23  from diffpy.srrietveld.exceptions import SrrIOError, SrrValueError 
- 24   
- 25  # constants: 
- 26   
- 27  ROOT_URL = "http://www.diffpy.org/" 
- 28  FORM_URL = urlparse.urljoin(ROOT_URL, "bugreport/srrietveld/") 
- 29  FORM_REALM = "diffpy" 
- 30  FORM_USER = "diffuser" 
- 31  FORM_ENCPW = "LPR3rU9s" 
- 32   
- 33   
- 34  # Routines 
- 35   
-
         36 -def submitBugReport(formfields): 
-
         37      """Fill in and submit bugreport form at FORM_URL. 
- 38      The post url is obtained by parsing the first HTML form. 
- 39   
- 40      formfields -- dictionary containing the keys.  When optional 
- 41                    fields are not specified, use defaults as listed: 
- 42   
- 43                    "reporter"    optional, ["anonymous"] 
- 44                    "summary"     required 
- 45                    "description" required 
- 46                    "component"   optional, ["srrietveld"] 
- 47                    "version"     optional, [current version of SrRietveld] 
- 48                    "traceback"   optional, [""] 
- 49   
- 50                    All values get stripped from leading and trailing spaces. 
- 51                    Any other keys in formfields are ignored. 
- 52   
- 53      No return value. 
- 54      Raise KeyError when formfields does not have required keys. 
- 55      Raise IOError on failed posting. 
- 56      """ 
- 57      import urllib 
- 58      import urllib2 
- 59      import cookielib 
- 60      from diffpy.srrietveld import __version__ 
- 61      # build dictionary with default values: 
- 62      formdata_user = { 
- 63          "reporter" : formfields.get("reporter", "").strip() or "anonymous", 
- 64          "summary" : formfields["summary"], 
- 65          "description" : formfields["description"], 
- 66          "component" : formfields.get("component", "srrietveld"), 
- 67          "version" : formfields.get("version", __version__), 
- 68          "traceback" : formfields.get("traceback", ""), 
- 69      } 
- 70      # format formdata_user items: 
- 71      for k in formdata_user: 
- 72          formdata_user[k] = formdata_user[k].strip() 
- 73      if formdata_user["description"]: 
- 74          formdata_user["description"] += "\n" 
- 75      if formdata_user["traceback"]: 
- 76          formdata_user["traceback"] = "\n" + formdata_user["traceback"] + "\n" 
- 77      # open FORM_URL 
- 78      handler = urllib2.HTTPBasicAuthHandler() 
- 79      handler.add_password(FORM_REALM, ROOT_URL, 
- 80              FORM_USER, FORM_ENCPW.encode('rot13')) 
- 81      cookier = urllib2.HTTPCookieProcessor(cookielib.LWPCookieJar()) 
- 82      opener = urllib2.build_opener(handler, cookier) 
- 83      formcontent = opener.open(FORM_URL).read() 
- 84      # find where does the form post its data 
- 85      try: 
- 86          formattr, formdata = getFormData(formcontent) 
- 87      # invalid web form would throw ValueError, raise this as 
- 88      # IOError so we get a meaningful error message from the gui. 
- 89      except ValueError, err: 
- 90          emsg = "Invalid webform - %s" % err 
- 91          raise SrrIOError(emsg) 
- 92      # build the formadata dictionary 
- 93      formdata.update(formdata_user) 
- 94      post_url = urlparse.urljoin(FORM_URL, formattr['action']) 
- 95      post_headers = {'User-agent' : 'SrRietveld (compatible; MSIE 5.5; WindowsNT)'} 
- 96      post_content = urllib.urlencode(formdata) 
- 97      post_request = urllib2.Request(post_url, post_content, post_headers) 
- 98      post_handle = opener.open(post_request) 
- 99      # result can be obtained by post_handle.read(), but it is not needed 
-100      return 
-
        101   
-102   
-
        103 -def getFormData(content, index=0): 
-
        104      """Extract action attribute from the first form in HTML document. 
-105   
-106      content  -- HTML code 
-107      index    -- zero-based index of the form in the HTML document 
-108   
-109      Return a tuple of (formattr, formdata) dictionaries, where 
-110      formattr -- has all the attributes of the <form> element 
-111      formdata -- has all the contain input field names and their values 
-112      """ 
-113      datagetter = _HTMLFormDataGetter() 
-114      fmattr, fmdata = datagetter(content) 
-115      rv = (fmattr[index], fmdata[index]) 
-116      return rv 
-
        117   
-118   
-119  # Helper classes 
-120   
-121   
-
        122 -class _HTMLFormDataGetter(HTMLParser.HTMLParser): 
-
        123      """Helper HTMLParser for extracting form data attributes from 
-124      the first form. 
-125   
-126      Instance data: 
-127   
-128      _formattrs   -- list of attribute dictionaries for all <form> tags 
-129      _formdata    -- list of input data dictionaries from all <form> tags 
-130   
-131      See also getFormData(). 
-132      """ 
-133   
-134   
-135      # declaration of instance data attributes 
-136      _formattrs = None 
-137      _formdata = None 
-138   
-139   
-
        140 -    def handle_starttag(self, tag, attrs): 
-
        141          """Store data dictionary for all HTML forms in the document. 
-142          """ 
-143          dattr = dict(attrs) 
-144          if tag == "form": 
-145              self._formattrs.append(dattr) 
-146              self._formdata.append({}) 
-147          if tag == "input" and 'name' in dattr: 
-148              name = dattr['name'] 
-149              value = dattr.get('value', '') 
-150              self._formdata[-1][name] = value 
-151          return 
-
        152   
-153   
-
        154 -    def __call__(self, content): 
-
        155          """Return a list of data dictionaries for all HTML forms in the document. 
-156   
-157          content -- HTML code 
-158   
-159          Return two lists of dictionaries for form attributes and form data. 
-160          Raise ValueError for invalid HTML code or when no form is present. 
-161          """ 
-162          self.reset() 
-163          self._formattrs = [] 
-164          self._formdata = [] 
-165          try: 
-166              self.feed(content) 
-167              self.close() 
-168          except HTMLParser.HTMLParseError, err: 
-169              raise SrrValueError, str(err) 
-170          return (self._formattrs, self._formdata) 
-
        171   
-172   
-173  # End of class _HTMLFormDataGetter 
-174   
-175   
-176  # test code 
-177   
-178  if __name__ == "__main__": 
-179      import time 
-180      submitBugReport({ 
-181          "summary" : "test, do not post", 
-182          "description" : "posted from submitBugReport on " + time.ctime(), 
-183      }) 
-184   
-
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        Class _HTMLFormDataGetter

        source code

        -
        -markupbase.ParserBase --+    
-                        |    
-    HTMLParser.HTMLParser --+
-                            |
-                           _HTMLFormDataGetter
-
        - -
        -

        Helper HTMLParser for extracting form data attributes from the first - form.

        -

        Instance data:

        -

        _formattrs -- list of attribute dictionaries for all <form> - tags _formdata -- list of input data dictionaries from all - <form> tags

        -

        See also getFormData().

        - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        handle_starttag(self, - tag, - attrs)
        - Store data dictionary for all HTML forms in the document.        		 - source code - -
        - -
        -   - - - - - - -
        __call__(self, - content)
        - Return a list of data dictionaries for all HTML forms in the - document.        		 - source code - -
        - -
        -

        Inherited from HTMLParser.HTMLParser: - __init__, - check_for_whole_start_tag, - clear_cdata_mode, - close, - error, - feed, - get_starttag_text, - goahead, - handle_charref, - handle_comment, - handle_data, - handle_decl, - handle_endtag, - handle_entityref, - handle_pi, - handle_startendtag, - parse_endtag, - parse_pi, - parse_starttag, - reset, - set_cdata_mode, - unescape, - unknown_decl -

        -

        Inherited from markupbase.ParserBase: - getpos, - parse_comment, - parse_declaration, - parse_marked_section, - updatepos -

        -

        Inherited from markupbase.ParserBase (private): - _parse_doctype_attlist, - _parse_doctype_element, - _parse_doctype_entity, - _parse_doctype_notation, - _parse_doctype_subset, - _scan_name -

        -
        - - - - - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - _formattrs = None -
        -   - - _formdata = None -
        -

        Inherited from HTMLParser.HTMLParser: - CDATA_CONTENT_ELEMENTS, - entitydefs -

        -

        Inherited from markupbase.ParserBase (private): - _decl_otherchars -

        -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        handle_starttag(self, - tag, - attrs) -

        -         		source code  -
        - -

        Store data dictionary for all HTML forms in the document.

        -
        -
        Overrides: - HTMLParser.HTMLParser.handle_starttag -
        -
        -
        -
        - -
        - -
        - - -
        -

        __call__(self, - content) -
        (Call operator) -

        -         		source code  -
        - -

        Return a list of data dictionaries for all HTML forms in the - document.

        -

        content -- HTML code

        -

        Return two lists of dictionaries for form attributes and form data. - Raise ValueError for invalid HTML code or when no form is present.

        -
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        Module buildfit

        source code

        -

        The file contains functions for building a Fit object.

        - - - - - - - - - - -
        - Classes
        -   - - BuildFit
        - BuildFit class is to build fit object based on the GUI inputs. -
        - - - - - - - - - - - - -
        - Variables
        -   - - __id__ = '$Id: buildfit.py 6300 2011-03-10 21:34:27Z yshang $' -
        -   - - __package__ = 'diffpy.srrietveld' -
        -

        Imports: - SrrConfigError, - UT -


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        Source Code for Module diffpy.srrietveld.buildfit

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2009 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Peng Tian 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14   
- 15  """The file contains functions for building a Fit object. 
- 16  """ 
- 17  __id__ = "$Id: buildfit.py 6300 2011-03-10 21:34:27Z yshang $" 
- 18  import diffpy.srrietveld.utility as UT 
- 19  from diffpy.srrietveld.exceptions import SrrConfigError 
- 20   
-
         21 -class BuildFit: 
-
         22      """ BuildFit class is to build fit object based on the GUI inputs. """ 
-
         23 -    def __init__(self, enginename, strudict, instdict, datadict): 
-
         24          """ Initialization """ 
- 25          self.engine = "diffpy.py" + enginename 
- 26          self.strudict = strudict 
- 27          self.instdict = instdict 
- 28          self.datadict = datadict 
- 29          return 
-
         30   
-
         31 -    def buildFit(self): 
-
         32          """ Build fit object """ 
- 33          # import engine fit 
- 34          fit = UT.importClass(self.engine+".fit", "fit", "Fit", None) 
- 35          self.buildPhase(fit) 
- 36          self.buildPattern(fit) 
- 37          self.buildContribution(fit)  
- 38          self.buildPeakProfile(fit)        
- 39          return fit 
-
         40   
-
         41 -    def buildPhase(self, fit): 
-
         42          """ Build phase """ 
- 43          for phasekey, phasevalue in self.strudict.items(): 
- 44              if phasekey.count("PHASE") == 1: 
- 45                  # set engine phase 
- 46                  phase = UT.importClass(self.engine+".phase", "phase", "Phase", fit) 
- 47                  atomdict = {} 
- 48                  for key, value in phasevalue[0].items(): 
- 49                      if key.startswith("ATOM"): 
- 50                          # set engine atom 
- 51                          atom = UT.importClass(self.engine+".atom", "atom",  
- 52                                                              "AtomCrystal", None) 
- 53                          for akey, avalue in value[0].items(): 
- 54                              if akey in ["Uiso", "Biso"]: 
- 55                                  atomadp = UT.importClass(self.engine+".atom", "atom",  
- 56                                             "AtomicDisplacementFactorIsotropic", None) 
- 57                              elif akey in ["U11", "B11"]: 
- 58                                  atomadp = UT.importClass(self.engine+".atom", "atom",  
- 59                                          "AtomicDisplacementFactorAnisotropic", None) 
- 60                              if akey.startswith("U") or akey.startswith("B"): 
- 61                                  atomadp.set(akey, avalue) 
- 62                              else: 
- 63                                  atom.set(akey, avalue) 
- 64                          atom.set("AtomicDisplacementFactor", atomadp) 
- 65                          atomdict[key] = atom 
- 66                      elif key in phase.ParamDict: 
- 67                          phase.set(key, value) 
- 68                  for key in sorted(atomdict.keys()): 
- 69                      phase.set("Atom", atomdict[key]) 
- 70                  # add into fit 
- 71                  fit.set("Phase", phase) 
- 72          return 
-
         73   
-
         74 -    def buildPattern(self, fit): 
-
         75          """ Build pattern  
- 76              FIXME: only for one bank now 
- 77          """ 
- 78          instname = self.instdict["Name"] 
- 79          if instname in ["NPDF", "POWGEN", "TOF"]: 
- 80              patternname = "PatternTOF" 
- 81              radiationtype = "NeutronTOF" 
- 82          elif instname in ["RAPDF", "NeutronCW", "Xray"]: 
- 83              patternname = "Pattern2Theta" 
- 84              radiationtype = "NeutronCW" 
- 85              if instname in ["RAPDF", "Xray"]: 
- 86                  radiationtype = "Xray" 
- 87          else: 
- 88              raise SrrConfigError("SrRietveld doesn't support %s!"%instname) 
- 89          # set engine pattern 
- 90          pattern = UT.importClass(self.engine+".pattern", "pattern", patternname, fit) 
- 91          # add into fit 
- 92          fit.set("Pattern", pattern) 
- 93          pattern.setDataProperty([self.datadict.keys()[0],  
- 94                  self.datadict.values()[0]["Name"]], radiationtype) 
- 95          for patternkey, patternvalue in self.instdict.items(): 
- 96              # set the single parameters 
- 97              if patternkey in pattern.ParamDict: 
- 98                  pattern.set(patternkey, patternvalue) 
- 99              elif patternkey == "MEASUREMENT": 
-100                  # set measurement range and scale factor 
-101                  for mkey, mvalue in patternvalue[0].items(): 
-102                      if mkey in pattern.ParamDict: 
-103                          pattern.set(mkey, mvalue) 
-104              elif patternkey == "BACKGROUND": 
-105                  # add background 
-106                  bgtype = patternvalue[0]["Type"] 
-107                  background = UT.importClass(self.engine+".pattern",  
-108                                                  "pattern", bgtype, pattern) 
-109                  pattern.set("Background",background) 
-110                  for bgkey, bgvalue in patternvalue[0].items(): 
-111                      if bgkey == "Type": 
-112                          continue 
-113                      else: 
-114                          background.set(bgkey, bgvalue) 
-115              elif patternkey == "EXCLUDEDREGION": 
-116                  # add excludedregion 
-117                  exre = UT.importClass(self.engine+".pattern", "pattern",  
-118                                                  "ExcludedRegion", pattern) 
-119                  for key, value in patternvalue[0].items(): 
-120                      exre.set(key, value) 
-121                  pattern.set("ExcludedRegion", exre) 
-122              elif patternkey == "ENERGY": 
-123                  for key, value in patternvalue[0].items(): 
-124                      pattern.set(key, value) 
-125              elif patternkey == "LPFACTOR": 
-126                  lpfactor = pattern.get("LPFactor") 
-127                  for key, value in patternvalue[0].items(): 
-128                      lpfactor.set(key, value) 
-129               
-130          return 
-
        131   
-
        132 -    def buildContribution(self, fit): 
-
        133          """ Build contribution """ 
-134          phaselist = fit.get("Phase") 
-135          patternlist = fit.get("Pattern") 
-136          #print phaselist, patternlist 
-137          for phase in phaselist: 
-138              for pattern in patternlist: 
-139                  classname = pattern.__class__.__name__ 
-140                  contributionname = "Contribution" + classname.split("Pattern")[1] 
-141                  contribution = UT.importClass(self.engine+".contribution",  
-142                          "contribution", contributionname, fit, pattern, phase) 
-143                  fit.set("Contribution", contribution) 
-144   
-145          for key, value in self.instdict["MEASUREMENT"][0].items(): 
-146              if key in contribution.ParamDict.keys(): 
-147                  contribution.set(key, value) 
-148   
-149          if "EXPDECAYFUNCTION" in self.instdict.keys(): 
-150              expdecay = contribution.get("ExpDecayFunction") 
-151              for key, value in self.instdict["EXPDECAYFUNCTION"][0].items(): 
-152                  expdecay.set(key, value) 
-153          else: 
-154              pass 
-155          return 
-
        156   
-157   
-
        158 -    def buildPeakProfile(self, fit): 
-
        159          """ Build peakprofile """ 
-160          contributionlist = fit.get("Contribution") 
-161          profile_id = -1 
-162          for instkey, instvalue in self.instdict.items(): 
-163              if instkey.count("PEAKPROFILE") == 1: 
-164                  profile = UT.importClass(self.engine+".contribution",  
-165                                          "contribution", instvalue[0]["Type"], None) 
-166                  for key, value in instvalue[0].items(): 
-167                      if key != "Type":    
-168                          profile.set(key, value) 
-169                  profile_id += 1 
-170                  contribution = contributionlist[profile_id] 
-171                  contribution.set("Profile", profile)  
-172          return 
-
        173   
-
        174 -    def addBkgdPoints(self, fit, bkgdlist): 
-
        175          """ Add background points to fit """ 
-176          patterns = fit.get("Pattern") 
-177          for pattern in patterns: 
-178              pattern.addBackgroundPoints(bkgdlist) 
-179          return 
-
        180   
-
        181 -    def addExre(self, fit, exredict): 
-
        182          """ Add excludedregion to fit """ 
-183          patterns = fit.get("Pattern") 
-184          for pattern in patterns: 
-185              pattern_id = patterns.index(pattern) + 1 
-186              bankterm = "BANK" + str(pattern_id) 
-187              if bankterm in exredict.keys():  
-188                  exre = UT.importClass(self.engine+".pattern", "pattern",  
-189                                                  "ExcludedRegion", pattern) 
-190                  for key, value in exredict[bankterm][0].items(): 
-191                      exre.set(key, value) 
-192                  pattern.set("ExcludedRegion", exre) 
-193          return 
-
        194   
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        Class BuildFit

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        -

        BuildFit class is to build fit object based on the GUI inputs.

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - enginename, - strudict, - instdict, - datadict)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        addBkgdPoints(self, - fit, - bkgdlist)
        - Add background points to fit        		 - source code - -
        - -
        -   - - - - - - -
        addExre(self, - fit, - exredict)
        - Add excludedregion to fit        		 - source code - -
        - -
        -   - - - - - - -
        buildContribution(self, - fit)
        - Build contribution        		 - source code - -
        - -
        -   - - - - - - -
        buildFit(self)
        - Build fit object        		 - source code - -
        - -
        -   - - - - - - -
        buildPattern(self, - fit)
        - Build pattern FIXME: only for one bank now        		 - source code - -
        - -
        -   - - - - - - -
        buildPeakProfile(self, - fit)
        - Build peakprofile        		 - source code - -
        - -
        -   - - - - - - -
        buildPhase(self, - fit)
        - Build phase        		 - source code - -
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        Module datafile

        source code

        -

        Read the information from the data file. Currently an interface. Using - the functionality in addon/datafile.py, will improve later

        - - - - - - - - - - -
        - Classes
        -   - - DataFile
        - The data file class -
        - - - - - - - - - - - - -
        - Variables
        -   - - __id__ = '$Id: datafile.py 6718 2011-08-23 21:33:20Z yshang $' -
        -   - - __package__ = 'diffpy.srrietveld.convert' -
        -

        Imports: - DataFileConverter, - SrrFileError, - os -


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        Source Code for Module diffpy.srrietveld.convert.datafile

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2009 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Yingrui Shang 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14  '''Read the information from the data file. Currently an interface. Using the  
- 15  functionality in addon/datafile.py, will improve later''' 
- 16   
- 17  __id__ = "$Id: datafile.py 6718 2011-08-23 21:33:20Z yshang $" 
- 18   
- 19  from diffpy.srrietveld.addon.datafile import DataFileConverter 
- 20  from diffpy.srrietveld.exceptions import SrrFileError 
- 21  import os 
- 22   
-
         23 -class DataFile: 
-
         24      '''The data file class''' 
-
         25 -    def __init__(self, filepath = None, engine = None,  
- 26                   xobs = None, yobs = None, ysig = None, rootname = None): 
-
         27          '''Constructor, the DataFile can be initiated either from a file path  
- 28          or arrays of data 
- 29          filepath - the filepath of the data file 
- 30          engine - the engine type 
- 31          xobs, yobs, ysig - the data arrays to initialize the data file 
- 32          rootname - the rootname of the file when constructed from x/y data arrays.  
- 33              NOTE: the extension name is always dat in this case''' 
- 34           
- 35          if filepath is not None: 
- 36              if not os.path.exists(filepath): 
- 37                  raise SrrFileError('The data file ' + filepath + ' does not exist.') 
- 38                  if not os.path.isfile(filepath): 
- 39                      raise SrrFileError('The data file path' + filepath + 'is not' + \ 
- 40                                         'a path to a file. ') 
- 41               
- 42              self.engine = engine 
- 43              self.filename = os.path.basename(filepath) 
- 44              self.data = open(filepath, 'rb').read() 
- 45               
- 46              self.xobs = [] 
- 47              self.yobs = [] 
- 48              self.ysig = [] 
- 49           
- 50          if xobs is not None: 
- 51              self.xobs = xobs 
- 52              self.yobs = yobs 
- 53              self.ysig = ysig 
- 54               
- 55              self.filename = 'datafile.dat' if rootname is None else rootname + '.dat'  
- 56               
- 57              # the length of the data is determined by xobs 
- 58              line = [] 
- 59              for idx, xx in enumerate(xobs): 
- 60                  if self.ysig is not None: 
- 61                      line.append("%s %s %s" %(xx, self.yobs[idx], self.ysig[idx])) 
- 62                  else: 
- 63                      line.append("%s %s" %(xx, self.yobs[idx])) 
- 64               
- 65              self.data = '\n'.join(line) 
- 66               
- 67          return 
-
         68       
-
         69 -    def __str__(self): 
-
         70          '''String conversion''' 
- 71          return str(self.data) 
-
         72       
-
         73 -    def __isConversionNeeded(self): 
-
         74          '''Check if the file needs conversion 
- 75          engine - gsas or fullprof 
- 76          return - True if conversion is needed''' 
- 77          engine = self.engine 
- 78           
- 79          root, ext = os.path.splitext(self.filename) 
- 80          if engine.lower() == 'gsas': 
- 81              if ext in [".chi", ".dat", ".txt", 'xye']: 
- 82                  return True 
- 83              elif ext in [".gsa", ".gda", "fxye", "raw"]: 
- 84                  return False 
- 85          if engine.lower() == 'fullprof': 
- 86              if ext in [".chi", ".gsa", ".gda", "fxye", "raw"]: 
- 87                  return True 
- 88              elif ext in [".dat"]: 
- 89                  return False 
- 90          else: 
- 91              from diffpy.srrietveld.utility import printWarning 
- 92              __warningMsg = 'Data file extension is not recognized. The ' + \ 
- 93                  'refinement may not run correctly. ' 
- 94              printWarning(__warningMsg) 
- 95           
- 96          return False 
-
         97       
-
         98 -    def dump(self, directory, basename = None): 
-
         99          '''dump the file to the directory 
-100          dir: the directory to dump the file 
-101          rootname: the new file name, if not none will replace self.filename 
-102          return the file path where the file dumped''' 
-103          nm = self.filename if basename is None else basename 
-104          filepath = os.path.join(directory, nm) 
-105          with open(filepath, 'wb') as f: 
-106              f.write(self.data) 
-107          return filepath 
-
        108       
-
        109 -    def write(self, filepath): 
-
        110          '''Write to filepath''' 
-111          with open(filepath, 'wb') as f: 
-112              f.write(self.data) 
-113          return 
-
        114   
-
        115 -    def prepDataFile(self, newDir, instrumentFile = None, filename = None): 
-
        116          '''Prepare the data file for different engines, and dump the prepared  
-117          file to a path. If conversion is not needed, the origianl file will be  
-118          dumped new directory - the path to dump the file 
-119          engine - the engine 
-120          rootName - the file name if different from that saved in the object 
-121          return the path to the prepared data file''' 
-122          from diffpy.srrietveld.addon.datafile import DataFileConverter 
-123          from diffpy.srrietveld.utility import printWarning 
-124           
-125          if not instrumentFile: 
-126              instrumentFile = None 
-127           
-128          fullpath = self.dump(newDir, filename) 
-129   
-130          root, ext = os.path.splitext(fullpath) 
-131           
-132          if filename: 
-133              root = os.path.splitext(filename)[0] 
-134               
-135          newPath = fullpath 
-136           
-137          if self.__isConversionNeeded(): 
-138              dataFile = DataFileConverter(fullpath) 
-139              if self.engine.lower() == 'gsas': 
-140                  newPath = root + '.gsa' 
-141                  # bank id is always 1 
-142                  dataFile.toGSASFile(fullpath, newPath, 1) 
-143              if self.engine.lower() == 'fullprof': 
-144                  newPath = root + '.dat' 
-145                   
-146                  if ext.lower() != '.chi': 
-147                      __warningMsg = 'To convert GSAS data file, installation of ' + \ 
-148                      'GSAS is needed and an instrument file is required. ' 
-149                       
-150                      printWarning(__warningMsg) 
-151                  # FIXM: convert gsas data file name to fullprof data file name 
-152                  # search the local directory for EXP files, may implement a  
-153                  # better algrethm 
-154                  dfc = DataFileConverter(fullpath, instrumentFile) 
-155                  import glob 
-156                  desfile = os.path.join(os.getcwd(), "*.EXP") 
-157                  expfilename = None 
-158                  for fn in glob.glob(desfile): 
-159                      expfilename = fn 
-160                  if expfilename: 
-161                      dfc.toFPFile(fullpath, newPath, 1, expfilename) 
-162                  elif ext.lower() == '.chi': 
-163                      dfc.toFPFile(fullpath, newPath, 1) 
-164                  else: 
-165                      __warningMsg = "To convert GSAS data file, GSAS is needed " + \ 
-166                      "to be installed and an instrument file is required." + \ 
-167                      "The gsas data file can not be converted. The refinment may " + \ 
-168                      "not run. " 
-169                      printWarning(__warningMsg) 
-170                       
-171          return newPath 
-
        172   
-
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        - -

        Class DataFile

        source code

        -

        The data file class

        - - - - - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - filepath=None, - engine=None, - xobs=None, - yobs=None, - ysig=None, - rootname=None)
        - Constructor, the DataFile can be initiated either from a file path -or arrays of data -filepath - the filepath of the data file -engine - the engine type -xobs, yobs, ysig - the data arrays to initialize the data file -rootname - the rootname of the file when constructed from x/y data arrays.        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - String conversion        		 - source code - -
        - -
        -   - - - - - - -
        dump(self, - directory, - basename=None)
        - dump the file to the directory dir: the directory to dump the file - rootname: the new file name, if not none will replace self.filename - return the file path where the file dumped        		 - source code - -
        - -
        -   - - - - - - -
        prepDataFile(self, - newDir, - instrumentFile=None, - filename=None)
        - Prepare the data file for different engines, and dump the prepared - file to a path.        		 - source code - -
        - -
        -   - - - - - - -
        write(self, - filepath)
        - Write to filepath        		 - source code - -
        - -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - filepath=None, - engine=None, - xobs=None, - yobs=None, - ysig=None, - rootname=None) -
        (Constructor) -

        -         		source code  -
        - - 
        -Constructor, the DataFile can be initiated either from a file path 
-or arrays of data
-filepath - the filepath of the data file
-engine - the engine type
-xobs, yobs, ysig - the data arrays to initialize the data file
-rootname - the rootname of the file when constructed from x/y data arrays. 
-    NOTE: the extension name is always dat in this case
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        prepDataFile(self, - newDir, - instrumentFile=None, - filename=None) -

        -         		source code  -
        - -

        Prepare the data file for different engines, and dump the prepared - file to a path. If conversion is not needed, the origianl file will be - dumped new directory - the path to dump the file engine - the engine - rootName - the file name if different from that saved in the object - return the path to the prepared data file

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        Module gsasinstparser

        source code

        -

        gsasinstparser.py is to parse the instrument info from .exp/iparm file - to get instrument instance for FullProf and GSAS.

        - - - - - - - - - - -
        - Classes
        -   - - GSASInstFile
        - Class to parse the instrument info from GSAS instrument file. -
        - - - - - - - - - - - - -
        - Variables
        -   - - __id__ = '$Id: gsasinstparser.py 6462 2011-04-02 00:41:29Z ysh... -
        -   - - __package__ = 'diffpy.srrietveld.convert' -
        -

        Imports: - SrrError, - SrrValueError -


        - - - - - - -
        - Variables Details
        - -
        - -
        -

        __id__

        - -
        -
        -
        -
        Value:
        - 
        -'$Id: gsasinstparser.py 6462 2011-04-02 00:41:29Z yshang $'
-
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        -

        Source Code for Module diffpy.srrietveld.convert.gsasinstparser

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2009 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Peng Tian 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14   
- 15  """ 
- 16   gsasinstparser.py is to parse the instrument info from .exp/iparm file 
- 17   to get instrument instance for FullProf and GSAS. 
- 18  """ 
- 19  from diffpy.srrietveld.exceptions import SrrValueError, SrrError 
- 20   
- 21  __id__ = "$Id: gsasinstparser.py 6462 2011-04-02 00:41:29Z yshang $" 
- 22   
-
         23 -class GSASInstFile: 
-
         24      """ Class to parse the instrument info from GSAS instrument file. 
- 25   
- 26      methods: 
- 27          _readInstFile 
- 28          parseInstType 
- 29          parseTOFInst 
- 30          parseCWInst 
- 31      """ 
-
         32 -    def __init__(self, instfilename, banklist=None, engine="gsas"): 
-
         33          """ Initialization 
- 34   
- 35          Arguments: 
- 36              instfilename    :   str, GSAS readable instrument file 
- 37              banklist        :   tuple, list of bank IDs for refinement 
- 38   
- 39          Return  :   None 
- 40          """ 
- 41          self._instfilename = instfilename 
- 42          self._banklist = banklist 
- 43          self._content = self._readInstFile() 
- 44          self._engine = engine 
- 45          self._instdict = {} 
- 46          self._instdict["Name"] = self.parseInstType() 
- 47          return 
-
         48   
-
         49 -    def parseInstInfo(self): 
-
         50          """ Parse Instrument Info into dict """ 
- 51          if self._instdict["Name"] == "TOF": 
- 52              self.parseTOFInst() 
- 53          else: 
- 54              self.parseCWInst() 
- 55          return self._instdict 
-
         56   
-
         57 -    def _readInstFile(self): 
-
         58          """Read the GSAS Instrument file and find the instrument type 
- 59          Return  : 
- 60              content :   the list of lines in instrument file 
- 61          """ 
- 62          try: 
- 63              ifile = open(self._instfilename, "r") 
- 64              ilines = ifile.readlines() 
- 65              ifile.close() 
- 66          except ValueError, e: 
- 67              errmsg = "Cannot open %s : %s!" % (self._instfilename, e.message)  
- 68              raise SrrValueError(errmsg) 
- 69   
- 70          return ilines 
-
         71   
-
         72 -    def parseInstType(self): 
-
         73          """Read the instrument type from file 
- 74          Return  : 
- 75              type  :    str, type of instrument 
- 76          """ 
- 77          # 1. parse the htype from file 
- 78          term = "INS   HTYPE" 
- 79          line = self.mapKey(term) 
- 80          sym = line.split()[2] 
- 81   
- 82          # 2. match to the instrument type 
- 83          typedict = {"PNTR": "TOF", "PNCR": "NeutronCW", "PXCR": "Xray"} 
- 84          if sym in typedict.keys(): 
- 85              type = typedict[sym] 
- 86   
- 87          return type 
-
         88   
-
         89 -    def parseTOFInst(self): 
-
         90          """Read the TOF instrument info 
- 91          Return  :   self._instdict 
- 92          """ 
- 93          # 1. Import 
- 94          for bankid in self._banklist: 
- 95              # 1.1 Find the TMIN, TMAX 
- 96              term = "INS  %iI ITYP"% int(bankid) 
- 97              line = self.mapKey(term) 
- 98              terms = line.split() 
- 99              self._instdict["MEASUREMENT"] = [{}] 
-100              if self._engine == "gsas": 
-101                  self._instdict["IFIL"] = self._instfilename 
-102                  self._instdict["MEASUREMENT"][0]["TMIN"] = float(terms[4]) 
-103                  self._instdict["MEASUREMENT"][0]["TMAX"] = float(terms[5]) 
-104              elif self._engine == "fullprof": 
-105                  self._instdict["MEASUREMENT"][0]["Thmin"] = float(terms[4]) 
-106                  self._instdict["MEASUREMENT"][0]["Thmax"] = float(terms[5]) 
-107              else: 
-108                  raise NotImplementedError 
-109   
-110              # 1.2 Find geometry DIFC/Dtt1, DIFA/Dtt2 and Zero 
-111              term = "INS  %i ICONS"% int(bankid) 
-112              line = self.mapKey(term) 
-113              terms = line.split() 
-114              self._instdict["ENERGY"] = [{}] 
-115              if self._engine == "gsas": 
-116                  self._instdict["ENERGY"][0]["DIFC"] = float(terms[3]) 
-117                  self._instdict["ENERGY"][0]["DIFA"] = float(terms[4]) 
-118                  self._instdict["ENERGY"][0]["ZERO"] = float(terms[5]) 
-119              elif self._engine == "fullprof": 
-120                  self._instdict["ENERGY"][0]["Dtt1"] = float(terms[3]) 
-121                  self._instdict["ENERGY"][0]["Dtt2"] = float(terms[4]) 
-122                  self._instdict["ENERGY"][0]["Zero"] = float(terms[5]) 
-123   
-124              # 1.3 Profile & Decay 
-125              # As default, choose the first profile 
-126              term = "INS  %iPRCF1"% int(bankid) 
-127              line = self.mapKey(term) 
-128              if line is not None: 
-129                  self._instdict["PEAKPROFILE"] = [{}] 
-130                  terms = line.split() 
-131                  ptyp = int(terms[2]) 
-132                  if self._engine == "gsas": 
-133                      self._instdict["PEAKPROFILE"][0]["CTOF"] = float(terms[4]) * 100 
-134                  else: 
-135                      raise NotImplementedError 
-136                  self._instdict["PEAKPROFILE"][0]["Type"] = "ProfileTOF" + str(ptyp) 
-137   
-138                  if ptyp == 1: 
-139                      cof_prof = {0: "alp0", 1: "alp1", 2: "bet0", 3: "bet1", 4: "sig0", 
-140                                  5: "sig1", 6: "sig2", 7: "s1ec", 8: "s2ec", 9: "rstr", 
-141                                  10: "rsta", 11: "rsca"} 
-142                  elif ptyp == 2: 
-143                      cof_prof = {0: "alp0", 1: "alp1", 2: "beta", 3: "switch", 4: "sig0", 
-144                                  5: "sig1", 6: "sig2", 7:"gam0", 8: "gam1", 9: "gam2", 
-145                                  10: "ptec", 11: "stec", 12: "difc", 13: "difa", 14: "zero"} 
-146                  elif ptyp == 3: 
-147                      cof_prof = {0: "alp", 1: "bet0", 2: "bet1", 3: "sig0", 4: "sig1", 
-148                                  5: "sig2", 6: "gam0", 7: "gam1", 8: "gam2", 9: "gsf", 
-149                                  10: "g1ec", 11: "g2ec", 12: "rstr", 13: "rsta", 14: "rsca", 
-150                                  15: "L11", 16: "L22", 17: "L33", 18: "L12", 19: "L13", 20: "L23"} 
-151                  elif ptyp == 4: 
-152                      cof_prof = {0: "alp", 1: "bet0", 2: "bet1", 3: "sig1", 4: "sig2", 
-153                                  5: "gam2", 6: "g2ec", 7: "gsf", 8: "rstr", 9: "rsta", 10: "rsca", 
-154                                  11: "eta", 12: "S400"} 
-155                  elif ptyp == 5: 
-156                      cof_prof = {0: "alp", 1: "bet0", 2: "bet1", 3: "sig0", 4: "sig1", 
-157                                  5: "sig2", 6: "gam0", 7: "gam1", 8: "gam2", 9: "gsf", 10: "g1ec", 
-158                                  11: "g2ec", 12: "rstr", 13: "rsta", 14: "rsca", 15: "D11", 16: "D22", 
-159                                  17: "D33", 18: "D12", 19: "D13", 20: "D23"} 
-160                  id_line = 0 
-161                  for k in range(int(terms[3])): 
-162                      if k % 4 == 0: 
-163                          id_line += 1 
-164                          iterm = "INS  %iPRCF1%i" % (int(bankid), id_line) 
-165                          pline = self.mapKey(iterm) 
-166                          pterms = pline.split() 
-167                      para_name = cof_prof[k] 
-168                      try: 
-169                          self._instdict["PEAKPROFILE"][0][para_name] = float(pterms[k%4+2]) 
-170                      except ValueError, e: 
-171                          errmsg = "Cannot find value for %s : %s!" % (para_name, e.message)   
-172                          raise SrrValueError(errmsg) 
-173              else: 
-174                  errmsg = "No profile information in instrument file %s!" % self._instfilename 
-175                  raise SrrError(errmsg) 
-176   
-177          return 
-
        178   
-
        179 -    def parseCWInst(self): 
-
        180          """Read the CW instrument info 
-181   
-182          Return  :  self._instdict 
-183          """ 
-184          bankid = int(self._banklist[0]) 
-185          # 1. Find geometry Lambda/Lambda2 and Zero 
-186          term = "INS  %i ICONS"% bankid 
-187          line = self.mapKey(term) 
-188          if line is not None: 
-189              terms = line.split() 
-190              if self._engine == "gsas": 
-191                  self._instdict["IFIL"] = self._instfilename 
-192                  self._instdict["ENERGY"] = [{}] 
-193                  self._instdict["ENERGY"][0]["LAM1"] = float(terms[3]) 
-194                  self._instdict["ENERGY"][0]["LAM2"] = float(terms[4]) 
-195                  self._instdict["ENERGY"][0]["ZERO"] = float(terms[5]) 
-196              elif self._engine == "fullprof": 
-197                  self._instdict["ENERGY"] = [{}] 
-198                  self._instdict["ENERGY"][0]["Lambda"] = float(terms[3]) 
-199                  self._instdict["ENERGY"][0]["Lambda2"] = float(terms[4]) 
-200                  self._instdict["ENERGY"][0]["Zero"] = float(terms[5]) 
-201          else: 
-202              errmsg = "No wavelength information in %s!" % self._instfilename 
-203              raise SrrError(errmsg) 
-204   
-205          # 3. Profile 
-206          # As default, choose the first profile 
-207          term = "INS  %iPRCF1"% bankid 
-208          line = self.mapKey(term) 
-209          if line is not None: 
-210              self._instdict["PEAKPROFILE"] = [{}] 
-211              terms = line.split() 
-212              ptyp = int(terms[2]) 
-213              if self._engine == "gsas": 
-214                  self._instdict["PEAKPROFILE"][0]["CTOF"] = float(terms[4]) * 100 
-215              else: 
-216                  raise NotImplementedError 
-217              self._instdict["PEAKPROFILE"][0]["Type"] = "Profile2Theta" + str(ptyp) 
-218   
-219              if ptyp == 1: 
-220                  cof_prof = {0: "U", 1: "V", 2: "W", 3: "asym", 4: "F1", 5: "F2"} 
-221              elif ptyp == 2: 
-222                  cof_prof = {0: "GU", 1: "GV", 2: "GW", 3: "LX", 4: "LY", 5: "trns", 
-223                              6: "asym", 7: "shft", 8: "GP", 9: "stec", 10: "ptec", 
-224                              11: "sfec", 12: "L11", 13: "L22", 14: "L33", 15: "L12", 
-225                              16: "L13", 17: "L23"} 
-226              elif ptyp == 3: 
-227                  cof_prof = {0: "GU", 1: "GV", 2: "GW", 3: "GP", 4: "LX", 5: "LY", 
-228                              6: "SL", 7: "HL", 8: "trns", 9: "shft", 10: "stec", 
-229                              11: "ptec", 12: "sfec", 13: "L11", 14: "L22", 15: "L33", 
-230                              16: "L12", 17: "L13", 18: "L23"} 
-231              elif ptyp == 4: 
-232                  cof_prof = {0: "GU", 1: "GV", 2: "GW", 3: "GP", 4: "LX", 5: "ptec", 
-233                              6: "trns", 7: "shft", 8: "sfec", 9: "SL", 10: "HL", 
-234                              11: "eta", 12: "S400", 13: "S004"} 
-235              elif ptyp == 5: 
-236                  cof_prof = {0: "GU", 1: "GV", 2: "GW", 3: "GP", 4: "LX", 5: "LY", 
-237                              6: "SL", 7: "HL", 8: "trns", 9: "shft", 10: "stec", 
-238                              11: "ptec", 12: "sfec", 13: "D11", 14: "D22", 15: "D33", 
-239                              16: "D12", 17: "D13", 18: "D23"} 
-240   
-241              id_line = 0 
-242              for k in range(int(terms[3])): 
-243                  if k % 4 == 0: 
-244                      id_line += 1 
-245                      iterm = "INS  %iPRCF1%i" % (bankid, id_line) 
-246                      pline = self.mapKey(iterm) 
-247                      pterms = pline.split() 
-248                  para_name = cof_prof[k] 
-249                  try: 
-250                      self._instdict["PEAKPROFILE"][0][para_name] = float(pterms[k%4+2]) 
-251                  except ValueError, e: 
-252                      errmsg = "Cannot find value for %s | %s!" % (para_name, e.message) 
-253                      raise SrrValueError(errmsg) 
-254          else: 
-255              errmsg = "No profile information in instrument file %s!" % self._instfilename 
-256              raise SrrError(errmsg) 
-257   
-258          return 
-
        259   
-
        260 -    def mapKey(self, key): 
-
        261          """ Find the FIRST line that includes the key in lines 
-262   
-263          Argument: 
-264          - key       :   key value 
-265   
-266          Return  :   str 
-267          """ 
-268          rline = None 
-269   
-270          for line in self._content: 
-271              if line.count(key) == 1: 
-272                  rline = line 
-273                  break 
-274   
-275          return rline 
-
        276   
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        -
        - -

        Class GSASInstFile

        source code

        -
        -Class to parse the instrument info from GSAS instrument file.
-
-methods:
-    _readInstFile
-    parseInstType
-    parseTOFInst
-    parseCWInst
-
-
        - - - - - - - - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - instfilename, - banklist=None, - engine='gsas')
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        mapKey(self, - key)
        - Find the FIRST line that includes the key in lines        		 - source code - -
        - -
        -   - - - - - - -
        parseCWInst(self)
        - Read the CW instrument info        		 - source code - -
        - -
        -   - - - - - - -
        parseInstInfo(self)
        - Parse Instrument Info into dict        		 - source code - -
        - -
        -   - - - - - - -
        parseInstType(self)
        - Read the instrument type from file...        		 - source code - -
        - -
        -   - - - - - - -
        parseTOFInst(self)
        - Read the TOF instrument info Return : self._instdict        		 - source code - -
        - -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - instfilename, - banklist=None, - engine='gsas') -
        (Constructor) -

        -         		source code  -
        - - 
        -Initialization
-
-Arguments:
-    instfilename    :   str, GSAS readable instrument file
-    banklist        :   tuple, list of bank IDs for refinement
-
-Return  :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        mapKey(self, - key) -

        -         		source code  -
        - - 
        -Find the FIRST line that includes the key in lines
-
-Argument:
-- key       :   key value
-
-Return  :   str
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        parseCWInst(self) -

        -         		source code  -
        - -

        Read the CW instrument info

        -

        Return : self._instdict

        -
        -
        -
        -
        - -
        - -
        - - -
        -

        parseInstType(self) -

        -         		source code  -
        - - 
        -Read the instrument type from file
-Return  :
-    type  :    str, type of instrument
-
-
        -
        -
        -
        -
        -
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        Module listfilereader

        source code

        -

        Load list of datafiles for sequential refinement and associated - environment variables such as temperature or pressure.

        - - - - - - - - - - - - - -
        - Classes
        -   - - CSVListFileReader
        - ListFileReader specialized for comma-separated-values (CSV) format. -
        -   - - ListFileReader
        - Object for loading datafiles and temperatures from a list file. -
        - - - - - - - - - - - - -
        - Functions
        -   - - - - - - -
        readListFile(filename, - fmt=None, - basepath=None)
        - Load an return ListFileReader instance from the specified file.        		 - source code - -
        - -
        -   - - - - - - -
        resolveColumnLabel(label)
        - Convert column label to a standard name.        		 - source code - -
        - -
        - - - - - - - - - - - - -
        - Variables
        -   - - __id__ = '$Id: listfilereader.py 6515 2011-04-13 14:52:02Z juh... -
        -   - - __package__ = 'diffpy.srrietveld.convert' -
        -

        Imports: - SrrFileError, - os, - re -


        - - - - - - -
        - Function Details
        - -
        - -
        - - -
        -

        readListFile(filename, - fmt=None, - basepath=None) -

        -         		source code  -
        - - 
        -Load an return ListFileReader instance from the specified file.
-
-filename -- path to the list file to be loaded.  Uses CSV reader
-            for ".csv" extensions or plain text reader otherwise.
-fmt      -- optional filename format.  Use "csv" for CSV reader
-            or "txt" for plain text reader.  When None, determine
-            format from the filename extension.
-basepath -- when specified, make loaded datapaths relative to the
-            basepath directory.  Use '.' for the current directory.
-            Do not modify datapaths when None.
-
-Return a ListFileReader instance.
-Raise ValueError for invalid fmt value.
-Raise SrrFileError for non-existent or corrupted file.
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        resolveColumnLabel(label) -

        -         		source code  -
        - -

        Convert column label to a standard name. This applies aliases as - defined in the _LABELALIASES and maps bank002 to bank2. Otherwise the - label remains unchanged.

        -

        label -- string label to be converted to standard name.

        -

        Return string.

        -
        -
        -
        -
        -
        - - - - - - -
        - Variables Details
        - -
        - -
        -

        __id__

        - -
        -
        -
        -
        Value:
        - 
        -'$Id: listfilereader.py 6515 2011-04-13 14:52:02Z juhas $'
-
        -
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        Source Code for Module diffpy.srrietveld.convert.listfilereader

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2011 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Peng Tian 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14   
- 15  """Load list of datafiles for sequential refinement and associated environment 
- 16  variables such as temperature or pressure. 
- 17  """ 
- 18   
- 19  import os 
- 20  import re 
- 21  from diffpy.srrietveld.exceptions import SrrFileError 
- 22   
- 23  # module version 
- 24  __id__ = "$Id: listfilereader.py 6515 2011-04-13 14:52:02Z juhas $" 
- 25   
- 26  # these aliases map alternate names of column labels to the standard name 
- 27  _LABELALIASES = { 
- 28          'run' : 'datafile', 
- 29  } 
- 30   
-
         31 -def readListFile(filename, fmt=None, basepath=None): 
-
         32      '''Load an return ListFileReader instance from the specified file. 
- 33   
- 34      filename -- path to the list file to be loaded.  Uses CSV reader 
- 35                  for ".csv" extensions or plain text reader otherwise. 
- 36      fmt      -- optional filename format.  Use "csv" for CSV reader 
- 37                  or "txt" for plain text reader.  When None, determine 
- 38                  format from the filename extension. 
- 39      basepath -- when specified, make loaded datapaths relative to the 
- 40                  basepath directory.  Use '.' for the current directory. 
- 41                  Do not modify datapaths when None. 
- 42   
- 43      Return a ListFileReader instance. 
- 44      Raise ValueError for invalid fmt value. 
- 45      Raise SrrFileError for non-existent or corrupted file. 
- 46      ''' 
- 47      if fmt is None: 
- 48          readerclass = (os.path.splitext(filename)[1].lower() == '.csv' 
- 49                  and CSVListFileReader or ListFileReader) 
- 50      elif fmt == 'csv': 
- 51          readerclass = CSVListFileReader 
- 52      elif fmt == 'txt': 
- 53          readerclass = ListFileReader 
- 54      else: 
- 55          emsg = 'Invalid fmt value, supported formats are "csv" and "txt".' 
- 56          raise ValueError(fmt) 
- 57      rv = readerclass(filename=filename) 
- 58      if basepath is not None: 
- 59          fdir = os.path.dirname(filename) 
- 60          makerelpath = (lambda f: 
- 61                  os.path.relpath(os.path.join(fdir, f), basepath)) 
- 62          for lb in rv.banklabels: 
- 63              rv.column[lb] = map(makerelpath, rv.column[lb]) 
- 64      return rv 
-
         65   
- 66   
-
         67 -def resolveColumnLabel(label): 
-
         68      '''Convert column label to a standard name. 
- 69      This applies aliases as defined in the _LABELALIASES and maps 
- 70      bank002 to bank2.  Otherwise the label remains unchanged. 
- 71   
- 72      label -- string label to be converted to standard name. 
- 73   
- 74      Return string. 
- 75      ''' 
- 76      lbare1 = label.strip() 
- 77      if lbare1.lower() in _LABELALIASES: 
- 78          return resolveColumnLabel(_LABELALIASES[lbare1.lower()]) 
- 79      # convert DataFilE to datafile 
- 80      if lbare1.lower() == 'datafile': 
- 81          lbare1 = lbare1.lower() 
- 82      # convert bank01 to bank1 
- 83      rv = re.sub(r'(?i)^(bank)(\d+)$', 
- 84              lambda mx: 'bank%i' % int(mx.group(2)), lbare1) 
- 85      return rv 
-
         86   
- 87  # ---------------------------------------------------------------------------- 
- 88   
-
         89 -class ListFileReader(object): 
-
         90      '''Object for loading datafiles and temperatures from a list file. 
- 91      Bank columns are loaded as list of strings, all other columns are 
- 92      converted to floats. 
- 93   
- 94      Class variables: 
- 95   
- 96      labelaliases -- dictionary of alternative column labels. 
- 97   
- 98      Instance variables: 
- 99   
-100      columnlabels -- list of column labels in the loaded list file 
-101      banklabels   -- list of bank-column labels sorted by bank index 
-102      column       -- dictionary that maps column label to associated 
-103                      list of values. 
-104      ''' 
-105   
-
        106 -    def __init__(self, filename=None, fp=None): 
-
        107          '''Initializa ListFileReader 
-108   
-109          filename -- optional path to a list file to be loaded 
-110          fp       -- file type object to be read 
-111   
-112          Only one of filename, fp arguments can be specified. 
-113          ''' 
-114          # check arguments 
-115          if None not in (filename, fp): 
-116              emsg = "Specify either filename or fp, not both." 
-117              raise ValueError(emsg) 
-118          self.columnlabels = [] 
-119          self.banklabels = [] 
-120          self.column = {} 
-121          if filename is not None: 
-122              try: 
-123                  with open(filename, 'rb') as fp1: 
-124                      self.readFile(fp1) 
-125              except IOError, e: 
-126                  raise SrrFileError(e) 
-127          if fp is not None: 
-128              self.readFile(fp) 
-129          return 
-
        130   
-131   
-
        132 -    def readFile(self, fp): 
-
        133          '''Read listfile from a file-type object fp. 
-134   
-135          No return value. 
-136          Raise SrrFileError if file loading failed. 
-137          ''' 
-138          # new variables 
-139          columnlabels = [] 
-140          column = {} 
-141          lineiter = iter(enumerate(fp)) 
-142          # load header line 
-143          for nr, line in lineiter: 
-144              nr += 1 
-145              w = line.split() 
-146              # skip blank and comment lines 
-147              if not w or w[0].startswith('#'):   continue 
-148              columnlabels = map(resolveColumnLabel, w) 
-149              for lb in columnlabels:  column[lb] = [] 
-150              self._validate(columnlabels, column) 
-151              break 
-152          # load data body 
-153          ncols = len(columnlabels) 
-154          for nr, line in lineiter: 
-155              nr += 1 
-156              w = line.split() 
-157              # skip blank and comment lines 
-158              if not w or w[0].startswith('#'):   continue 
-159              if len(w) != ncols: 
-160                  emsg = "%i: expected %i columns, found %i." % ( 
-161                          nr, ncols, len(w)) 
-162                  raise SrrFileError(emsg) 
-163              for lb, wi in zip(columnlabels, w): 
-164                  column[lb].append(wi) 
-165          self._validate(columnlabels, column) 
-166          return 
-
        167   
-168   
-
        169 -    def _validate(self, columnlabels, column): 
-
        170          '''Check consistency of the loaded data, convert non-bank 
-171          columns to floats and if everything is OK, update the instance 
-172          attributes. 
-173   
-174          Raise SrrFileError when something is not OK. 
-175          ''' 
-176          # check for duplicate columns 
-177          lbidx = {} 
-178          for idx, lb in enumerate(columnlabels): 
-179              if lb in lbidx: 
-180                  emsg = "Duplicate labels in columns %i, %i" % ( 
-181                          lbidx[lb] + 1, idx + 1) 
-182                  raise SrrFileError(emsg) 
-183              lbidx[lb] = idx 
-184          # sort bank labels by their index 
-185          banklabels = filter(re.compile(r'(?:bank\d+|datafile)$').match, 
-186                  columnlabels) 
-187          banklabels.sort(key=lambda s: int(filter(str.isdigit, s) or 0)) 
-188          # require at least one bankN label 
-189          if columnlabels and not banklabels: 
-190              emsg = "Missing column label 'datafile' or 'bankN'." 
-191              raise SrrFileError(emsg) 
-192          # convert non-bank columns to floats 
-193          for lb, col in column.iteritems(): 
-194              # skip the bank columns 
-195              if lb in banklabels:  continue 
-196              try: 
-197                  col[:] = map(float, col) 
-198              except ValueError, e: 
-199                  emsg = "Error converting %i-th column to floats: %s" % ( 
-200                          columnlabels.index(lb) + 1, e) 
-201                  raise SrrFileError(emsg) 
-202          # everything OK here, assign the new variables 
-203          self.columnlabels = columnlabels 
-204          self.banklabels = banklabels 
-205          self.column = column 
-
        206   
-207  # End of class ListFileReader 
-208   
-209  # ---------------------------------------------------------------------------- 
-210   
-
        211 -class CSVListFileReader(ListFileReader): 
-
        212      '''ListFileReader specialized for comma-separated-values (CSV) format. 
-213      ''' 
-214   
-
        215 -    def readFile(self, fp): 
-
        216          '''Read CSV-formatted listfile from a file-type object fp. 
-217   
-218          No return value. 
-219          Raise SrrFileError if file loading failed. 
-220          ''' 
-221          import csv 
-222          reader = csv.reader(fp) 
-223          try: 
-224              rows = [row for row in reader] 
-225          except csv.Error, e: 
-226              emsg = "%i: %s" % (reader.line_num, e) 
-227              raise SrrFileError(emsg) 
-228          headrow = rows and rows.pop(0) or [] 
-229          columnlabels = map(resolveColumnLabel, headrow) 
-230          column = dict(zip(columnlabels, map(list, zip(*rows)))) 
-231          self._validate(columnlabels, column) 
-232          return 
-
        233   
-234  # End of class CSVListFileReader 
-235   
-
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        -
        - -

        Class CSVListFileReader

        source code

        -
        -    object --+    
-             |    
-ListFileReader --+
-                 |
-                CSVListFileReader
-
        - -
        -

        ListFileReader specialized for comma-separated-values (CSV) - format.

        - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        readFile(self, - fp)
        - Read CSV-formatted listfile from a file-type object fp.        		 - source code - -
        - -
        -

        Inherited from object: - __delattr__, - __format__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__, - __sizeof__, - __str__, - __subclasshook__ -

        -
            Inherited from ListFileReader
        -   - - - - - - -
        __init__(self, - filename=None, - fp=None)
        - Initializa ListFileReader        		 - source code - -
        - -
        - - - - - - - - - -
        - Properties
        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        readFile(self, - fp) -

        -         		source code  -
        - -

        Read CSV-formatted listfile from a file-type object fp.

        -

        No return value. Raise SrrFileError if file loading failed.

        -
        -
        Overrides: - ListFileReader.readFile -
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        Class ListFileReader

        source code

        -
        -object --+
-         |
-        ListFileReader
-
        - -
        Known Subclasses:
        -
        - -
        - -
        -
        -Object for loading datafiles and temperatures from a list file.
-Bank columns are loaded as list of strings, all other columns are
-converted to floats.
-
-Class variables:
-
-labelaliases -- dictionary of alternative column labels.
-
-Instance variables:
-
-columnlabels -- list of column labels in the loaded list file
-banklabels   -- list of bank-column labels sorted by bank index
-column       -- dictionary that maps column label to associated
-                list of values.
-
-
        - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - filename=None, - fp=None)
        - Initializa ListFileReader        		 - source code - -
        - -
        -   - - - - - - -
        readFile(self, - fp)
        - Read listfile from a file-type object fp.        		 - source code - -
        - -
        -

        Inherited from object: - __delattr__, - __format__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__, - __sizeof__, - __str__, - __subclasshook__ -

        -
        - - - - - - - - - -
        - Properties
        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - filename=None, - fp=None) -
        (Constructor) -

        -         		source code  -
        - -

        Initializa ListFileReader

        -

        filename -- optional path to a list file to be loaded fp -- file - type object to be read

        -

        Only one of filename, fp arguments can be specified.

        -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        readFile(self, - fp) -

        -         		source code  -
        - -

        Read listfile from a file-type object fp.

        -

        No return value. Raise SrrFileError if file loading failed.

        -
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        Module strategyfile

        source code

        -

        Parse different strategy file provided by users

        - - - - - - - - - - -
        - Classes
        -   - - StrategyFile
        - Parse the strategy file into a list of dictionaries for later - refinement [{method: [[fullpath, value, constrain formula], ...]}, - {... -
        - - - - - - - - - - - - -
        - Variables
        -   - - __id__ = '$Id: strategyfile.py 6671 2011-07-29 02:22:12Z yshan... -
        -   - - __package__ = 'diffpy.srrietveld.convert' -
        -

        Imports: - SrrFileError, - os -


        - - - - - - -
        - Variables Details
        - -
        - -
        -

        __id__

        - -
        -
        -
        -
        Value:
        - 
        -'$Id: strategyfile.py 6671 2011-07-29 02:22:12Z yshang $'
-
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        Source Code for Module diffpy.srrietveld.convert.strategyfile

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2009 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Peng Tian 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14   
- 15  """ Parse different strategy file provided by users """ 
- 16   
- 17  __id__ = "$Id: strategyfile.py 6671 2011-07-29 02:22:12Z yshang $" 
- 18   
- 19  import os 
- 20  from diffpy.srrietveld.exceptions import SrrFileError 
- 21   
-
         22 -class StrategyFile: 
-
         23      ''' Parse the strategy file into a list of dictionaries for later refinement 
- 24          [{method: [[fullpath, value, constrain formula], ...]}, {...}, ...] 
- 25      ''' 
-
         26 -    def __init__(self, fit, strategyfile=None, strategy=None): 
-
         27          """ Initialization """ 
- 28          self.fit = fit 
- 29          self.strategyfile = strategyfile 
- 30          # Default value of strategy is None, then make it empty.  
- 31          # NOTE: if make the default value to be empty list, then strategy will  
- 32          # be a static variable and every initiation of StrategyFile the  
- 33          # passed in strategy variable will keep the previous value, which is  
- 34          # highly undesired 
- 35          if strategy is None: 
- 36              strategy = [] 
- 37          self.strategy = strategy 
- 38          self.variableid = 0 
- 39   
- 40          if strategyfile: 
- 41              self.parseStrategyFile() 
- 42   
- 43          if strategy: 
- 44              # if only input strategylist(assume list in good format), 
- 45              # need to reset variableid 
- 46              self.ResetVariableId() 
- 47          return 
-
         48   
-
         49 -    def readFile(self): 
-
         50          """ Read file """ 
- 51          sifile = open(self.strategyfile, "rU") 
- 52          self.inlines = sifile.readlines() 
- 53          sifile.close() 
- 54          return 
-
         55   
-
         56 -    def parseStrategyFile(self): 
-
         57          """ Parse .txt format file 
- 58           strateylist = [{method: [[fullpath, value, constrain formula], ...]}, {...}, ...] 
- 59                  method: 'Rietveld' or 'Lebail' 
- 60                  fullpath: full path of parameter; 
- 61                  value: initial value of refined parameter; 
- 62                  formula of constraint: 1.0*Var_paramname 
- 63          """ 
- 64          # 1. read file 
- 65          self.readFile() 
- 66   
- 67          # 2. parse the content into list 
- 68          paramlist = [] 
- 69          method = "" 
- 70          step = {} 
- 71          stepn = -1 
- 72          for ln, line in enumerate(self.inlines): 
- 73              line = line.strip() 
- 74              if not line: 
- 75                  continue 
- 76              if line.startswith('#'): 
- 77                  continue 
- 78              terms = line.split() 
- 79              #if terms[0] in [""]: 
- 80              #    continue 
- 81               
- 82              if len(terms) == 3: # the first parameter in a step 
- 83                  # save the last step 
- 84                  if stepn >= 0: 
- 85                      step[method] = paramlist 
- 86                      self.strategy.append(step) 
- 87                  stepn += 1 
- 88                   
- 89                  step = {} 
- 90                  paramlist = [] 
- 91                   
- 92                  method = terms[0] 
- 93                  generalpath = terms[1] 
- 94                  generalformula = terms[2] 
- 95                   
- 96              elif len(terms) == 2: # the following parameters in a step 
- 97                  generalpath = terms[0] 
- 98                  generalformula = terms[1] 
- 99              else: 
-100                  raise SrrFileError("The format of strategy file is wrong in line %d" % ln) 
-101               
-102              # add last step paramlist if method is the same 
-103              #if self.strategy: 
-104              #    lastmethod, lastparamlist = self.strategy[-1].items()[0] 
-105              #    if lastmethod == method: 
-106              #        for param in lastparamlist: 
-107              #            paramlist.append(param) 
-108   
-109              # specify the template into used cases 
-110              #FIXME: since generalized strategy files are used, some of the  
-111              # parameters may not exist, for example the sig0 in profile -4 
-112              # if it failed, then continue to the next line 
-113              try: 
-114                  pftuplelist = self.transRefinables(generalpath, generalformula) 
-115              except: 
-116                  continue 
-117              for fullpath, formula in pftuplelist: 
-118                  paramlist.append([fullpath, '', formula]) 
-119               
-120          # get the last step 
-121          step[method] = paramlist 
-122          self.strategy.append(step) 
-123           
-124          return 
-
        125   
-
        126 -    def ResetVariableId(self): 
-
        127          """ When input strategylist, need to reset variableid. 
-128          """ 
-129          variableids = [] 
-130          for step in self.strategy: 
-131              for param in step.values()[0]: 
-132                  variableid = param[2].split("_")[1] 
-133                  if variableid not in variableids: 
-134                      variableids.append(variableid) 
-135                      self.variableid += 1 
-136                      param[2].replace(variableid, str(self.variableid)) 
-137          return 
-
        138   
-
        139 -    def transRefinables(self, generalpath, generalformula): 
-
        140          """ Translate the generalpath and generalformula in strategyfile 
-141              And return the pftuplelist containing the list of parameters for the project. 
-142          """ 
-143          pftuplelist = [] 
-144          # special treatment needs for Lattice 
-145          if generalpath.endswith("Lattice"): 
-146              parpaths = [] 
-147              for name in ["a", "b", "c", "alpha", "beta", "gamma"]: 
-148                  parpaths.extend(self._parsePath(generalpath.replace("Lattice", name))) 
-149          elif generalpath.endswith("Background"): 
-150              # FIXME: the group indexing of upper node is not supported, such as  
-151              # pattern[:].Background.BCK[:] while BCK[:] is interpreted, but pattern[:] 
-152              # is not expanded 
-153              backgroundobj = self.fit.getByPath(generalpath) 
-154              if isinstance(backgroundobj, list): 
-155                  backgroundobj = backgroundobj[0] 
-156                   
-157              if backgroundobj.get("BCK"): 
-158                  generalpath += ".BCK[:]" 
-159              else: 
-160                  generalpath += ".BACK[:]" 
-161              parpaths = self._parsePath(generalpath) 
-162          else: 
-163              parpaths = self._parsePath(generalpath) 
-164          for path in parpaths: 
-165              self.variableid += 1 
-166              formula = generalformula.split("_")[0] + "_" + str(self.variableid) 
-167              pftuplelist.append((path, formula)) 
-168   
-169          return pftuplelist 
-
        170   
-171   
-
        172 -    def _parsePath(self, path): 
-
        173          """Parse a path having a form as ABC[1], without '.' 
-174   
-175          path -- the path to an parameter or parameter array 
-176          return: a list of translated paths. 
-177          """ 
-178          import re 
-179          res = re.search(r'(.+)\[([0-9:]+)\]$', path) 
-180          if res: 
-181              parpath, index= res.groups() 
-182   
-183              # The code below build either a slice or an int from the string 
-184              if index.count(':') > 0: 
-185                  # try to make a slice 
-186                  index = slice(*[{True: lambda n: None, False: int}[x == ''](x) 
-187                                  for x in (index.split(':') + ['', '', ''])[:3]]) 
-188              else: 
-189                  index = int(index) 
-190   
-191              datasets = self.fit.getByPath(parpath) 
-192              if not isinstance(datasets, list): 
-193                  datasets = [datasets, ] 
-194   
-195              paths = [] 
-196              for dataset in datasets: 
-197                  if isinstance(index, int): 
-198                      paths.append(dataset.path + '[%i]'%index) 
-199                  else: 
-200                      n = dataset.shape[-1] 
-201                      start, stop, step = index.indices(n) 
-202                      parpath = dataset.path 
-203                      for i in range(start, stop, step): 
-204                          paths.append(parpath+'[%i]'%i) 
-205   
-206              return paths 
-207           
-208          datasets = self.fit.getByPath(path) 
-209          if not isinstance(datasets, list): 
-210              # it may be a list or not 
-211              datasets = [datasets,] 
-212   
-213          return [dataset.path for dataset in datasets] 
-
        214   
-
        215 -    def writeToFile(self, fullpath): 
-
        216          '''write the strateg list to a local file. The strategy is read from the  
-217          strategy member variable, no the lines 
-218          fullpath - the file path to write into 
-219          return''' 
-220          import diffpy.srrietveld.gui.srrguiglobals as GLOBALS  
-221          lines = [] 
-222          lines.append("# SrRietveld project file: %s" % GLOBALS.project.basepath + GLOBALS.project.name) 
-223          lines.append("# Refinement name:" + self.fit.name) 
-224          for step in self.strategy: 
-225              method = step.keys()[0] # each step got only one key, the method 
-226              line = "" 
-227              for ln, param in enumerate(step[method]): 
-228                  datapath = param[0].split('.', 1)[-1] 
-229                  fomular = param[2] 
-230                  if ln == 0: # the first step,add the refinement method  
-231                      line = "\t".join([method, datapath, fomular]) 
-232                  else: 
-233                      line = "\t".join(["\t", datapath, fomular]) 
-234                       
-235                  lines.append(line) 
-236           
-237          with open(fullpath, "w") as f: 
-238              f.write(os.linesep.join(lines)) 
-239               
-240          return 
-
        241   
-
        242 -    def getStrategy(self): 
-
        243          """ Get the strategy list """ 
-244          return self.strategy 
-
        245   
-
        246 -    def setStrategy(self, strategylist): 
-
        247          """ Set new list to strategylist """ 
-248          self.strategy = strategylist 
-249          return 
-
        250   
-
        251 -    def getStrategyStep(self, step): 
-
        252          """ Get the step dict """ 
-253          return self.strategy[step-1] 
-
        254   
-
        255 -    def getStepParamList(self, step): 
-
        256          """ Get strategy for certain step """ 
-257          if step == 0: 
-258              return [] 
-259          else: 
-260              return self.strategy[step-1].values()[0] 
-
        261   
-
        262 -    def getStepMethod(self, step): 
-
        263          """ Get method for certain step """ 
-264          if step == 0: # no strategy, default Rietveld 
-265              return "Rietveld" 
-266          else: 
-267              return self.strategy[step-1].keys()[0] 
-
        268   
-
        269 -    def getStrategyId(self, stepstrategy): 
-
        270          """ Get the order of the stepstrategy """ 
-271          return self.strategy.index(stepstrategy) + 1 
-
        272   
-
        273 -    def getNumStep(self): 
-
        274          """ Get total number of steps """ 
-275          return len(self.strategy) 
-
        276   
-
        277 -    def getNewVariableId(self): 
-
        278          """ Get new variable id """ 
-279          self.variableid += 1 
-280          return self.variableid 
-
        281   
-
        282 -    def mergeParamList(self, newparam, paramlist): 
-
        283          """ Form a new paramlist """ 
-284          currparamlist = [] 
-285          currparamlist.append(newparam) 
-286          for param in paramlist: 
-287              currparamlist.append(param) 
-288          return currparamlist 
-
        289   
-
        290 -    def getPosParamFullPath(self, id): 
-
        291          """ Get Fullpath for id parameter in strategyeditor """ 
-292          paramlist, stepparamid = self.getPosParamListId(id) 
-293          param = paramlist[stepparamid] 
-294          return param[0] 
-
        295   
-
        296 -    def removePosParam(self, id): 
-
        297          """ Remove the position in strategyeditor from parameter list """ 
-298          paramlist, stepparamid = self.getPosParamListId(id) 
-299          paramlist.pop(stepparamid) 
-300          return 
-
        301   
-
        302 -    def addPosParam(self, id, param): 
-
        303          """ Add the parameter into paramlist """ 
-304          paramlist, stepparamid = self.getPosParamListId(id) 
-305          paramlist.insert(stepparamid, param) 
-306          return 
-
        307   
-
        308 -    def getPosParamListId(self, id): 
-
        309          """ Get corresponding paramlist to id of strategyeditor """ 
-310          paramid = 0 
-311          stepid = 0 
-312          for step in self.strategy: 
-313              stepid += 1 
-314              paramlist = step.values()[0] 
-315              stepparamid = -1 
-316              for param in paramlist: 
-317                  paramid += 1 
-318                  stepparamid += 1 
-319                  if (paramid+stepid) == id: 
-320                      return paramlist, stepparamid 
-321          return 
-
        322   
-
        323 -    def removeStep(self, step): 
-
        324          """ Remove the step from list """ 
-325          self.strategy.pop(step-1) 
-326          return 
-
        327   
-
        328 -    def addParam(self, step, posid, fullpath, value='', formula=None): 
-
        329          """ Add the fullpath into parameter list """ 
-330          strategystep = self.strategy[step-1] 
-331          paramlist = strategystep.values()[0] 
-332          if formula == None: 
-333              self.variableid += 1 
-334              formula = "1.0*Var_" + str(self.variableid) 
-335          paramlist.insert(posid, [fullpath, value, formula]) 
-336          return 
-
        337   
-
        338 -    def addNewStep(self, step, method, paramlist): 
-
        339          """ Addd new strategystep """ 
-340          self.strategy.insert(step, {method: paramlist}) 
-341          return 
-
        342   
-
        343 -    def clear(self): 
-
        344          """ Clean the strategy list """ 
-345          self.strategy = [] 
-346          return 
-
        347   
-
        -
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        Class StrategyFile

        source code

        -

        Parse the strategy file into a list of dictionaries for later - refinement [{method: [[fullpath, value, constrain formula], ...]}, {...}, - ...]

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        ResetVariableId(self)
        - When input strategylist, need to reset variableid.        		 - source code - -
        - -
        -   - - - - - - -
        __init__(self, - fit, - strategyfile=None, - strategy=None)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        addNewStep(self, - step, - method, - paramlist)
        - Addd new strategystep        		 - source code - -
        - -
        -   - - - - - - -
        addParam(self, - step, - posid, - fullpath, - value='', - formula=None)
        - Add the fullpath into parameter list        		 - source code - -
        - -
        -   - - - - - - -
        addPosParam(self, - id, - param)
        - Add the parameter into paramlist        		 - source code - -
        - -
        -   - - - - - - -
        clear(self)
        - Clean the strategy list        		 - source code - -
        - -
        -   - - - - - - -
        getNewVariableId(self)
        - Get new variable id        		 - source code - -
        - -
        -   - - - - - - -
        getNumStep(self)
        - Get total number of steps        		 - source code - -
        - -
        -   - - - - - - -
        getPosParamFullPath(self, - id)
        - Get Fullpath for id parameter in strategyeditor        		 - source code - -
        - -
        -   - - - - - - -
        getPosParamListId(self, - id)
        - Get corresponding paramlist to id of strategyeditor        		 - source code - -
        - -
        -   - - - - - - -
        getStepMethod(self, - step)
        - Get method for certain step        		 - source code - -
        - -
        -   - - - - - - -
        getStepParamList(self, - step)
        - Get strategy for certain step        		 - source code - -
        - -
        -   - - - - - - -
        getStrategy(self)
        - Get the strategy list        		 - source code - -
        - -
        -   - - - - - - -
        getStrategyId(self, - stepstrategy)
        - Get the order of the stepstrategy        		 - source code - -
        - -
        -   - - - - - - -
        getStrategyStep(self, - step)
        - Get the step dict        		 - source code - -
        - -
        -   - - - - - - -
        mergeParamList(self, - newparam, - paramlist)
        - Form a new paramlist        		 - source code - -
        - -
        -   - - - - - - -
        parseStrategyFile(self)
        - Parse .txt format file...        		 - source code - -
        - -
        -   - - - - - - -
        readFile(self)
        - Read file        		 - source code - -
        - -
        -   - - - - - - -
        removePosParam(self, - id)
        - Remove the position in strategyeditor from parameter list        		 - source code - -
        - -
        -   - - - - - - -
        removeStep(self, - step)
        - Remove the step from list        		 - source code - -
        - -
        -   - - - - - - -
        setStrategy(self, - strategylist)
        - Set new list to strategylist        		 - source code - -
        - -
        -   - - - - - - -
        transRefinables(self, - generalpath, - generalformula)
        - Translate the generalpath and generalformula in strategyfile And - return the pftuplelist containing the list of parameters for the - project.        		 - source code - -
        - -
        -   - - - - - - -
        writeToFile(self, - fullpath)
        - write the strateg list to a local file.        		 - source code - -
        - -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        parseStrategyFile(self) -

        -         		source code  -
        - - 
        -Parse .txt format file
-strateylist = [{method: [[fullpath, value, constrain formula], ...]}, {...}, ...]
-       method: 'Rietveld' or 'Lebail'
-       fullpath: full path of parameter;
-       value: initial value of refined parameter;
-       formula of constraint: 1.0*Var_paramname
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        writeToFile(self, - fullpath) -

        -         		source code  -
        - -

        write the strateg list to a local file. The strategy is read from the - strategy member variable, no the lines fullpath - the file path to write - into return

        -
        -
        -
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        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.convert.xmlparser-module.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.convert.xmlparser-module.html deleted file mode 100644 index 876855ed..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.convert.xmlparser-module.html +++ /dev/null @@ -1,188 +0,0 @@ - - - - - diffpy.srrietveld.convert.xmlparser - - - - - - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Package convert :: - Module xmlparser - - - - - -
        [frames] | no frames]
        -
        - -

        Module xmlparser

        source code

        -

        XMLfile parser is to parse XML input files.

        - - - - - - - - - - - - - - - - - - - - - - - - - -
        - Classes
        -   - - BackgroundXML -
        -   - - ExcludedRegionXML -
        -   - - InstrumentXML -
        -   - - StrategyXML -
        -   - - StructureXML -
        -   - - XMLFile
        - Parser XML file -
        - - - - - - - - - - - - -
        - Variables
        -   - - __id__ = '$Id: xmlparser.py 5658 2010-07-09 20:05:34Z juhas $' -
        -   - - __package__ = 'diffpy.srrietveld.convert' -
        -

        Imports: - xml -


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        -

        Source Code for Module diffpy.srrietveld.convert.xmlparser

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2009 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Peng Tian 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14   
- 15  """ XMLfile parser is to parse XML input files. """ 
- 16   
- 17  __id__ = "$Id: xmlparser.py 5658 2010-07-09 20:05:34Z juhas $" 
- 18   
- 19  import xml.dom.minidom 
- 20   
-
         21 -class XMLFile: 
-
         22      """ Parser XML file""" 
-
         23 -    def __init__(self): 
-
         24          """ Initialization """ 
- 25          return 
-
         26   
-
         27 -    def importXMLFile(self, filename): 
-
         28          """ Import general XML file """ 
- 29          try: 
- 30              xmlfile = open(filename, "r") 
- 31              rietxml = xml.dom.minidom.parse(xmlfile) 
- 32              xmlfile.close() 
- 33          except IOError: 
- 34              errmsg = "%-10s Cannot Be Found" % (filename) 
- 35              raise IOError(errmsg) 
- 36          return rietxml 
-
         37   
-
         38 -    def xmlToDict(self, xmlnode): 
-
         39          """ Convert an XML object to a dictionary """ 
- 40          rdict = {} 
- 41          # 1. Attribution 
- 42          if xmlnode.attributes is not None: 
- 43              for index in range(xmlnode.attributes.length): 
- 44                  attrname = xmlnode.attributes.item(index).name 
- 45                  attrval  = xmlnode.attributes.getNamedItem(attrname).value 
- 46                  try: 
- 47                      rdict[str(attrname)] = int(attrval) 
- 48                      continue 
- 49                  except: 
- 50                      try: 
- 51                          rdict[str(attrname)] = float(attrval) 
- 52                          continue 
- 53                      except: 
- 54                          rdict[str(attrname)] = str(attrval) 
- 55   
- 56   
- 57          # 2. Recursive to call child nodes 
- 58          for child in xmlnode.childNodes: 
- 59              if child == None: 
- 60                  continue 
- 61              if not rdict.has_key(str(child.localName)): 
- 62                  rdict[str(child.localName)] = [] 
- 63              rdict[str(child.localName)].append( self.xmlToDict(child) ) 
- 64   
- 65          return rdict 
-
         66   
-
         67 -class StructureXML(XMLFile): 
-
         68 -    def __init__(self, structurefilename): 
-
         69          self.structurefile = structurefilename 
- 70          self.structurexml = self.importXMLFile(structurefilename) 
- 71          return 
-
         72   
-
         73 -    def parseStructureXML(self): 
-
         74          for childnode in self.structurexml.childNodes: 
- 75              if childnode.localName == "MODEL": 
- 76                  modelnode = childnode 
- 77                  break 
- 78              if childnode.localName != "MODEL" or modelnode == None: 
- 79                  raise NotImplementedError("Not recognized xml format!") 
- 80   
- 81          self.strudict = self.xmlToDict(modelnode) 
- 82          return self.strudict 
-
         83   
-
         84 -class InstrumentXML(XMLFile): 
-
         85 -    def __init__(self, instrumentfilename): 
-
         86          self.instrumentfile = instrumentfilename 
- 87          self.instrumentxml = self.importXMLFile(instrumentfilename) 
- 88          return 
-
         89   
-
         90 -    def parseInstrumentXML(self): 
-
         91          for childnode in self.instrumentxml.childNodes: 
- 92              if childnode.localName == "INSTRUMENT": 
- 93                  instrumentnode = childnode 
- 94                  break 
- 95              if childnode.localName != "INSTRUMENT" or instrumentnode == None: 
- 96                  raise NotImplementedError("Not recognized xml format!") 
- 97   
- 98          self.instdict = self.xmlToDict(instrumentnode) 
- 99          return self.instdict 
-
        100   
-
        101 -class StrategyXML(XMLFile): 
-
        102 -    def __init__(self, strategyfilename): 
-
        103          self.strategyfile = strategyfilename 
-104          self.strategyxml = self.importXMLFile(strategyfilename) 
-105          return 
-
        106   
-
        107 -class BackgroundXML(XMLFile): 
-
        108 -    def __init__(self, backgroundfilename): 
-
        109          self.backgroundfile = backgroundfilename 
-110          self.backgroundxml = self.importXMLFile(backgroundfilename) 
-111          return 
-
        112   
-
        113 -    def addToInstDict(self, instdict): 
-
        114          instdict["BACKGROUND"] = [] 
-115          for childnode in self.backgroundxml.childNodes: 
-116              if childnode.localName == "BACKGROUND": 
-117                  instdict["BACKGROUND"].append(self.xmlToDict(childnode)) 
-118              else: 
-119                  raise NotImplementedError("Not recognized xml format!") 
-120          return instdict 
-
        121   
-
        122 -class ExcludedRegionXML(XMLFile): 
-
        123 -    def __init__(self, excludedregionfilename): 
-
        124          self.excludedregionfile = excludedregionfilename 
-125          self.exrexml = self.importXMLFile(excludedregionfilename) 
-126          return 
-
        127   
-
        -
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        - - Package diffpy :: - Package srrietveld :: - Package convert :: - Module xmlparser :: - Class BackgroundXML - - - - - -
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        -
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        Class BackgroundXML

        source code

        -
        -XMLFile --+
-          |
-         BackgroundXML
-
        - -
        - - - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - backgroundfilename)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        addToInstDict(self, - instdict) - source code - -
        - -
            Inherited from XMLFile
        -   - - - - - - -
        importXMLFile(self, - filename)
        - Import general XML file        		 - source code - -
        - -
        -   - - - - - - -
        xmlToDict(self, - xmlnode)
        - Convert an XML object to a dictionary        		 - source code - -
        - -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - backgroundfilename) -
        (Constructor) -

        -         		source code  -
        - -

        Initialization

        -
        -
        Overrides: - XMLFile.__init__ -
        (inherited documentation)
        - -
        -
        -
        -
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        - -

        Class ExcludedRegionXML

        source code

        -
        -XMLFile --+
-          |
-         ExcludedRegionXML
-
        - -
        - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - excludedregionfilename)
        - Initialization        		 - source code - -
        - -
            Inherited from XMLFile
        -   - - - - - - -
        importXMLFile(self, - filename)
        - Import general XML file        		 - source code - -
        - -
        -   - - - - - - -
        xmlToDict(self, - xmlnode)
        - Convert an XML object to a dictionary        		 - source code - -
        - -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - excludedregionfilename) -
        (Constructor) -

        -         		source code  -
        - -

        Initialization

        -
        -
        Overrides: - XMLFile.__init__ -
        (inherited documentation)
        - -
        -
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        -
        - -

        Class InstrumentXML

        source code

        -
        -XMLFile --+
-          |
-         InstrumentXML
-
        - -
        - - - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - instrumentfilename)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        parseInstrumentXML(self) - source code - -
        - -
            Inherited from XMLFile
        -   - - - - - - -
        importXMLFile(self, - filename)
        - Import general XML file        		 - source code - -
        - -
        -   - - - - - - -
        xmlToDict(self, - xmlnode)
        - Convert an XML object to a dictionary        		 - source code - -
        - -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - instrumentfilename) -
        (Constructor) -

        -         		source code  -
        - -

        Initialization

        -
        -
        Overrides: - XMLFile.__init__ -
        (inherited documentation)
        - -
        -
        -
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        - -

        Class StrategyXML

        source code

        -
        -XMLFile --+
-          |
-         StrategyXML
-
        - -
        - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - strategyfilename)
        - Initialization        		 - source code - -
        - -
            Inherited from XMLFile
        -   - - - - - - -
        importXMLFile(self, - filename)
        - Import general XML file        		 - source code - -
        - -
        -   - - - - - - -
        xmlToDict(self, - xmlnode)
        - Convert an XML object to a dictionary        		 - source code - -
        - -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - strategyfilename) -
        (Constructor) -

        -         		source code  -
        - -

        Initialization

        -
        -
        Overrides: - XMLFile.__init__ -
        (inherited documentation)
        - -
        -
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        Class StructureXML

        source code

        -
        -XMLFile --+
-          |
-         StructureXML
-
        - -
        - - - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - structurefilename)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        parseStructureXML(self) - source code - -
        - -
            Inherited from XMLFile
        -   - - - - - - -
        importXMLFile(self, - filename)
        - Import general XML file        		 - source code - -
        - -
        -   - - - - - - -
        xmlToDict(self, - xmlnode)
        - Convert an XML object to a dictionary        		 - source code - -
        - -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - structurefilename) -
        (Constructor) -

        -         		source code  -
        - -

        Initialization

        -
        -
        Overrides: - XMLFile.__init__ -
        (inherited documentation)
        - -
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        -
        - -

        Class XMLFile

        source code

        -
        Known Subclasses:
        -
        - -
        - -
        -

        Parser XML file

        - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        importXMLFile(self, - filename)
        - Import general XML file        		 - source code - -
        - -
        -   - - - - - - -
        xmlToDict(self, - xmlnode)
        - Convert an XML object to a dictionary        		 - source code - -
        - -
        - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
        - - - - - -
        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:57 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.exceptions-module.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.exceptions-module.html deleted file mode 100644 index c7c3dc57..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.exceptions-module.html +++ /dev/null @@ -1,195 +0,0 @@ - - - - - diffpy.srrietveld.exceptions - - - - - - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module exceptions - - - - - -
        [frames] | no frames]
        -
        - -

        Module exceptions

        source code

        - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - Classes
        -   - - SrrConfigError
        - SrRietveld config exception. -
        -   - - SrrError
        - Basic SrRietveld exception class. -
        -   - - SrrFileError
        - SrRietveld file exception -
        -   - - SrrIOError
        - SrRietveld input / output exception -
        -   - - SrrInputError
        - SrRietveld exception by user input -
        -   - - SrrRunTimeError
        - SrRietveld run time exception -
        -   - - SrrValueError
        - SrRietveld value exception -
        - - - - - - - - - - - - -
        - Variables
        -   - - __id__ = '$Id: exceptions.py 6300 2011-03-10 21:34:27Z yshang $' -
        -   - - __package__ = None -
        - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
        - - - - - -
        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:57 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.exceptions-pysrc.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.exceptions-pysrc.html deleted file mode 100644 index 9277505c..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.exceptions-pysrc.html +++ /dev/null @@ -1,465 +0,0 @@ - - - - - diffpy.srrietveld.exceptions - - - - - - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module exceptions - - - - - -
        [frames] | no frames]
        -
        -

        Source Code for Module diffpy.srrietveld.exceptions

        -
        - 1  ############################################################################## 
- 2  # 
- 3  # diffpy.srrietveld by DANSE Diffraction group 
- 4  #                   Simon J. L. Billinge 
- 5  #                   (c) 2010 Trustees of the Columbia University 
- 6  #                   in the City of New York.  All rights reserved. 
- 7  # 
- 8  # File coded by:    Jiwu Liu 
- 9  # 
-10  # See AUTHORS.txt for a list of people who contributed. 
-11  # See LICENSE.txt for license information. 
-12  # 
-13  ############################################################################## 
-14   
-
        15 -class SrrError(Exception): 
-
        16      """Basic SrRietveld exception class.""" 
-
        17 -    def __init__(self, info, errType): 
-
        18          """initialize 
-19   
-20          info -- description string 
-21          """ 
-22          Exception.__init__(self) 
-23          self.info = info 
-24          self.type = errType 
-25          return 
-
        26   
-
        27 -    def __str__(self): 
-
        28          return self.info 
-
        29   
-
        30 -class SrrConfigError(SrrError): 
-
        31      """ SrRietveld config exception.""" 
-
        32 -    def __init__(self, info): 
-
        33          """initialize 
-34   
-35          info -- description string 
-36          """ 
-37           
-38          SrrError.__init__(self, info, self.__class__.__name__) 
-39          return 
-
        40 -class SrrFileError(SrrError): 
-
        41      '''SrRietveld file exception''' 
-
        42 -    def __init__(self, info): 
-
        43          """initialize 
-44   
-45          info -- description string 
-46          """ 
-47          SrrError.__init__(self, info, self.__class__.__name__) 
-48          return 
-
        49 -class SrrIOError(SrrError): 
-
        50      '''SrRietveld input / output exception''' 
-
        51 -    def __init__(self, info): 
-
        52          """initialize 
-53   
-54          info -- description string 
-55          """ 
-56          SrrError.__init__(self, info, self.__class__.__name__) 
-57          return 
-
        58       
-
        59 -class SrrRunTimeError(SrrError): 
-
        60      '''SrRietveld run time exception''' 
-
        61 -    def __init__(self, info): 
-
        62          """initialize 
-63   
-64          info -- description string 
-65          """ 
-66          SrrError.__init__(self, info, self.__class__.__name__) 
-67          return 
-
        68 -class SrrValueError(SrrError): 
-
        69      '''SrRietveld value exception''' 
-
        70 -    def __init__(self, info): 
-
        71          """initialize 
-72   
-73          info -- description string 
-74          """ 
-75          SrrError.__init__(self, info, self.__class__.__name__) 
-76          return 
-
        77 -class SrrInputError(SrrError): 
-
        78      '''SrRietveld exception by user input''' 
-
        79 -    def __init__(self, info): 
-
        80          """initialize 
-81   
-82          info -- description string 
-83          """ 
-84          SrrError.__init__(self, info, self.__class__.__name__) 
-85          return 
-
        86  # version 
-87  __id__ = "$Id: exceptions.py 6300 2011-03-10 21:34:27Z yshang $" 
-88   
-89  # End of file 
-90   
-
        -
        - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
        - - - - - -
        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:58 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.exceptions.SrrConfigError-class.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.exceptions.SrrConfigError-class.html deleted file mode 100644 index 33b462cc..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.exceptions.SrrConfigError-class.html +++ /dev/null @@ -1,250 +0,0 @@ - - - - - diffpy.srrietveld.exceptions.SrrConfigError - - - - - - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module exceptions :: - Class SrrConfigError - - - - - -
        [frames] | no frames]
        -
        - -

        Class SrrConfigError

        source code

        -
        -              object --+            
-                       |            
-exceptions.BaseException --+        
-                           |        
-        exceptions.Exception --+    
-                               |    
-                        SrrError --+
-                                   |
-                                  SrrConfigError
-
        - -
        -

        SrRietveld config exception.

        - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - info)
        - initialize        		 - source code - -
        - -
        -

        Inherited from exceptions.Exception: - __new__ -

        -

        Inherited from exceptions.BaseException: - __delattr__, - __getattribute__, - __getitem__, - __getslice__, - __reduce__, - __repr__, - __setattr__, - __setstate__, - __unicode__ -

        -

        Inherited from object: - __format__, - __hash__, - __reduce_ex__, - __sizeof__, - __subclasshook__ -

        -
            Inherited from SrrError
        -   - - - - - - -
        __str__(self)
        - str(x)        		 - source code - -
        - -
        - - - - - - - - - -
        - Properties
        -

        Inherited from exceptions.BaseException: - args, - message -

        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - info) -
        (Constructor) -

        -         		source code  -
        - -

        initialize

        -

        info -- description string

        -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
        - - - - - -
        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:57 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.exceptions.SrrError-class.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.exceptions.SrrError-class.html deleted file mode 100644 index dc6956df..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.exceptions.SrrError-class.html +++ /dev/null @@ -1,277 +0,0 @@ - - - - - diffpy.srrietveld.exceptions.SrrError - - - - - - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module exceptions :: - Class SrrError - - - - - -
        [frames] | no frames]
        -
        - -

        Class SrrError

        source code

        -
        -              object --+        
-                       |        
-exceptions.BaseException --+    
-                           |    
-        exceptions.Exception --+
-                               |
-                              SrrError
-
        - -
        Known Subclasses:
        -
        - -
        - -
        -

        Basic SrRietveld exception class.

        - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - info, - errType)
        - initialize        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - str(x)        		 - source code - -
        - -
        -

        Inherited from exceptions.Exception: - __new__ -

        -

        Inherited from exceptions.BaseException: - __delattr__, - __getattribute__, - __getitem__, - __getslice__, - __reduce__, - __repr__, - __setattr__, - __setstate__, - __unicode__ -

        -

        Inherited from object: - __format__, - __hash__, - __reduce_ex__, - __sizeof__, - __subclasshook__ -

        -
        - - - - - - - - - -
        - Properties
        -

        Inherited from exceptions.BaseException: - args, - message -

        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - info, - errType) -
        (Constructor) -

        -         		source code  -
        - -

        initialize

        -

        info -- description string

        -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        __str__(self) -
        (Informal representation operator) -

        -         		source code  -
        - -

        str(x)

        -
        -
        Overrides: - object.__str__ -
        (inherited documentation)
        - -
        -
        -
        -
        - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
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        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:57 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.exceptions.SrrFileError-class.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.exceptions.SrrFileError-class.html deleted file mode 100644 index 25e0ecca..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.exceptions.SrrFileError-class.html +++ /dev/null @@ -1,250 +0,0 @@ - - - - - diffpy.srrietveld.exceptions.SrrFileError - - - - - - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module exceptions :: - Class SrrFileError - - - - - -
        [frames] | no frames]
        -
        - -

        Class SrrFileError

        source code

        -
        -              object --+            
-                       |            
-exceptions.BaseException --+        
-                           |        
-        exceptions.Exception --+    
-                               |    
-                        SrrError --+
-                                   |
-                                  SrrFileError
-
        - -
        -

        SrRietveld file exception

        - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - info)
        - initialize        		 - source code - -
        - -
        -

        Inherited from exceptions.Exception: - __new__ -

        -

        Inherited from exceptions.BaseException: - __delattr__, - __getattribute__, - __getitem__, - __getslice__, - __reduce__, - __repr__, - __setattr__, - __setstate__, - __unicode__ -

        -

        Inherited from object: - __format__, - __hash__, - __reduce_ex__, - __sizeof__, - __subclasshook__ -

        -
            Inherited from SrrError
        -   - - - - - - -
        __str__(self)
        - str(x)        		 - source code - -
        - -
        - - - - - - - - - -
        - Properties
        -

        Inherited from exceptions.BaseException: - args, - message -

        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - info) -
        (Constructor) -

        -         		source code  -
        - -

        initialize

        -

        info -- description string

        -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
        - - - - - -
        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:57 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.exceptions.SrrIOError-class.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.exceptions.SrrIOError-class.html deleted file mode 100644 index 159de8f7..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.exceptions.SrrIOError-class.html +++ /dev/null @@ -1,250 +0,0 @@ - - - - - diffpy.srrietveld.exceptions.SrrIOError - - - - - - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module exceptions :: - Class SrrIOError - - - - - -
        [frames] | no frames]
        -
        - -

        Class SrrIOError

        source code

        -
        -              object --+            
-                       |            
-exceptions.BaseException --+        
-                           |        
-        exceptions.Exception --+    
-                               |    
-                        SrrError --+
-                                   |
-                                  SrrIOError
-
        - -
        -

        SrRietveld input / output exception

        - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - info)
        - initialize        		 - source code - -
        - -
        -

        Inherited from exceptions.Exception: - __new__ -

        -

        Inherited from exceptions.BaseException: - __delattr__, - __getattribute__, - __getitem__, - __getslice__, - __reduce__, - __repr__, - __setattr__, - __setstate__, - __unicode__ -

        -

        Inherited from object: - __format__, - __hash__, - __reduce_ex__, - __sizeof__, - __subclasshook__ -

        -
            Inherited from SrrError
        -   - - - - - - -
        __str__(self)
        - str(x)        		 - source code - -
        - -
        - - - - - - - - - -
        - Properties
        -

        Inherited from exceptions.BaseException: - args, - message -

        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - info) -
        (Constructor) -

        -         		source code  -
        - -

        initialize

        -

        info -- description string

        -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
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        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.exceptions.SrrInputError-class.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.exceptions.SrrInputError-class.html deleted file mode 100644 index 3815a77e..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.exceptions.SrrInputError-class.html +++ /dev/null @@ -1,250 +0,0 @@ - - - - - diffpy.srrietveld.exceptions.SrrInputError - - - - - - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module exceptions :: - Class SrrInputError - - - - - -
        [frames] | no frames]
        -
        - -

        Class SrrInputError

        source code

        -
        -              object --+            
-                       |            
-exceptions.BaseException --+        
-                           |        
-        exceptions.Exception --+    
-                               |    
-                        SrrError --+
-                                   |
-                                  SrrInputError
-
        - -
        -

        SrRietveld exception by user input

        - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - info)
        - initialize        		 - source code - -
        - -
        -

        Inherited from exceptions.Exception: - __new__ -

        -

        Inherited from exceptions.BaseException: - __delattr__, - __getattribute__, - __getitem__, - __getslice__, - __reduce__, - __repr__, - __setattr__, - __setstate__, - __unicode__ -

        -

        Inherited from object: - __format__, - __hash__, - __reduce_ex__, - __sizeof__, - __subclasshook__ -

        -
            Inherited from SrrError
        -   - - - - - - -
        __str__(self)
        - str(x)        		 - source code - -
        - -
        - - - - - - - - - -
        - Properties
        -

        Inherited from exceptions.BaseException: - args, - message -

        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - info) -
        (Constructor) -

        -         		source code  -
        - -

        initialize

        -

        info -- description string

        -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
        - - - - - -
        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:57 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.exceptions.SrrRunTimeError-class.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.exceptions.SrrRunTimeError-class.html deleted file mode 100644 index 5d6c22a3..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.exceptions.SrrRunTimeError-class.html +++ /dev/null @@ -1,250 +0,0 @@ - - - - - diffpy.srrietveld.exceptions.SrrRunTimeError - - - - - - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module exceptions :: - Class SrrRunTimeError - - - - - -
        [frames] | no frames]
        -
        - -

        Class SrrRunTimeError

        source code

        -
        -              object --+            
-                       |            
-exceptions.BaseException --+        
-                           |        
-        exceptions.Exception --+    
-                               |    
-                        SrrError --+
-                                   |
-                                  SrrRunTimeError
-
        - -
        -

        SrRietveld run time exception

        - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - info)
        - initialize        		 - source code - -
        - -
        -

        Inherited from exceptions.Exception: - __new__ -

        -

        Inherited from exceptions.BaseException: - __delattr__, - __getattribute__, - __getitem__, - __getslice__, - __reduce__, - __repr__, - __setattr__, - __setstate__, - __unicode__ -

        -

        Inherited from object: - __format__, - __hash__, - __reduce_ex__, - __sizeof__, - __subclasshook__ -

        -
            Inherited from SrrError
        -   - - - - - - -
        __str__(self)
        - str(x)        		 - source code - -
        - -
        - - - - - - - - - -
        - Properties
        -

        Inherited from exceptions.BaseException: - args, - message -

        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - info) -
        (Constructor) -

        -         		source code  -
        - -

        initialize

        -

        info -- description string

        -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
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        Class SrrValueError

        source code

        -
        -              object --+            
-                       |            
-exceptions.BaseException --+        
-                           |        
-        exceptions.Exception --+    
-                               |    
-                        SrrError --+
-                                   |
-                                  SrrValueError
-
        - -
        -

        SrRietveld value exception

        - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - info)
        - initialize        		 - source code - -
        - -
        -

        Inherited from exceptions.Exception: - __new__ -

        -

        Inherited from exceptions.BaseException: - __delattr__, - __getattribute__, - __getitem__, - __getslice__, - __reduce__, - __repr__, - __setattr__, - __setstate__, - __unicode__ -

        -

        Inherited from object: - __format__, - __hash__, - __reduce_ex__, - __sizeof__, - __subclasshook__ -

        -
            Inherited from SrrError
        -   - - - - - - -
        __str__(self)
        - str(x)        		 - source code - -
        - -
        - - - - - - - - - -
        - Properties
        -

        Inherited from exceptions.BaseException: - args, - message -

        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - info) -
        (Constructor) -

        -         		source code  -
        - -

        initialize

        -

        info -- description string

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        Overrides: - object.__init__ -
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        Module export

        source code

        - - - - - - - - - - - - - - - -
        - Functions
        -   - - - - - - -
        exportCifFile(fit, - exportDir, - rootname, - index)
        - Save the EXP file based on user selections and inputs        		 - source code - -
        - -
        -   - - - - - - -
        exportDISAGLFile(fit, - exportDir, - rootName, - index)
        - save the bond length angle file        		 - source code - -
        - -
        -   - - - - - - -
        exportEngineFile(fit, - exportDir, - rootName, - index)
        - Save the EXP file based on user selections and inputs fit - the fit - object exportDir - the directory to export the files rootName - the - root name of the files to separate files for different datasets index - - the index of the file        		 - source code - -
        - -
        - - - - - - - - - - - - -
        - Variables
        -   - - __id__ = '$Id: export.py 6718 2011-08-23 21:33:20Z yshang $' -
        -   - - __package__ = 'diffpy.srrietveld' -
        -

        Imports: - DataFile, - EXPFile, - GLOBALS, - SrrRunTimeError, - UTIILS, - copy, - os, - pcrFileWriter, - shutil, - tempfile -


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        Source Code for Module diffpy.srrietveld.export

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2010 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Yingrui Shang 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14  __id__ = "$Id: export.py 6718 2011-08-23 21:33:20Z yshang $" 
- 15   
- 16  '''The functions to export the results from SrRietveld''' 
- 17  import tempfile, shutil, os 
- 18  from diffpy.pygsas.expfile import EXPFile 
- 19  from diffpy.pyfullprof.pcrfilewriter import pcrFileWriter 
- 20  from diffpy.srrietveld.convert.datafile import DataFile 
- 21  import copy 
- 22  import diffpy.srrietveld.gui.srrguiglobals as GLOBALS 
- 23  import diffpy.srrietveld.utility as UTIILS 
- 24  from diffpy.srrietveld.exceptions import SrrRunTimeError 
- 25   
-
         26 -def __generateCifFile(fit, rootName, index): 
-
         27      '''generate the exp and gsa file in the workingDir 
- 28      fit -- the fit object 
- 29      workingDir -- the directory to put all the generated files 
- 30      rootName -- The rootName for the files, etc rootName.EXP, rootName.gsa 
- 31      index -- the index of the data in the fit to be exported 
- 32      return status of runDISAGL 
- 33      ''' 
- 34      # save the exp file first 
- 35      #tmpDir = __generateEXPFile(fit, rootName, index) 
- 36      #from diffpy.pygsas.genles import runPowGen 
- 37      #runPowGen(rootName, tmpDir, 'refine', 1, 'r') 
- 38       
- 39      tmpDir = __generateDISAGLFile(fit, rootName, index) 
- 40       
- 41      from diffpy.pygsas.export import runGSAS2CIF 
- 42   
- 43      runGSAS2CIF(rootName, tmpDir) 
- 44       
- 45      return tmpDir 
-
         46   
-
         47 -def exportCifFile(fit, exportDir, rootname, index): 
-
         48      '''Save the EXP file based on user selections and inputs''' 
- 49       
- 50      et = fit.getEngineType() 
- 51      if et != 'gsas': 
- 52          __msg = 'Exporting to CIF file is only supported for GSAS projects.' 
- 53          UTIILS.printWarning(__msg) 
- 54       
- 55      tmpDir = __generateCifFile(fit, rootname, index) 
- 56   
- 57      fileList = [os.path.join(tmpDir, f)  
- 58                  for f in os.listdir(tmpDir)] 
- 59       
- 60      for f in fileList: 
- 61          shutil.copyfile(f, os.path.join(exportDir ,os.path.basename(f))) 
- 62      # delete the temp working directory 
- 63      try: 
- 64          shutil.rmtree(tmpDir) 
- 65      except Exception, e: 
- 66          print e.message 
- 67   
- 68      return 
-
         69       
- 70  # End class ExportCifDialog 
- 71   
-
         72 -def __generateDISAGLFile(fit, rootName, index): 
-
         73      '''generate the exp and gsa file in the workingDir 
- 74      fit -- the fit object 
- 75      workingDir -- the directory to put all the generated files 
- 76      rootName -- The rootName for the files, etc rootName.EXP, rootName.gsa 
- 77      index -- the index of the data in the fit to be exported 
- 78      return status of runDISAGL 
- 79      ''' 
- 80      # Generate the EXP file first 
- 81      tmpDir = __generateEXPFile(fit, rootName , index) 
- 82      from diffpy.pygsas.genles import runPowGen 
- 83      from diffpy.pygsas.export import runDISAGL 
- 84      runPowGen(rootName, tmpDir, 'refine', 1, 'r') 
- 85      status = runDISAGL(rootName, tmpDir) 
- 86       
- 87      return tmpDir 
-
         88       
-
         89 -def exportDISAGLFile(fit, exportDir, rootName, index): 
-
         90      '''save the bond length angle file''' 
- 91       
- 92      et = fit.getEngineType() 
- 93      if et != 'gsas': 
- 94          __msg = 'Exporting to DISAGL file is only supported for GSAS projects.' 
- 95          UTIILS.printWarning(__msg) 
- 96   
- 97      # Generate the disagl file 
- 98      tmpDir = __generateDISAGLFile(fit, rootName, index) 
- 99   
-100      fileList = [os.path.join(tmpDir, f)  
-101                  for f in os.listdir(tmpDir)] 
-102       
-103      for f in fileList: 
-104          shutil.copyfile(f, os.path.join(exportDir ,os.path.basename(f))) 
-105      # delete the temp working directory 
-106      try: 
-107          shutil.rmtree(tmpDir) 
-108      except Exception, e: 
-109          print e.message 
-110   
-111      return 
-
        112   
-
        113 -def __generateEXPFile(fit, rootName, index): 
-
        114      '''generate the exp and gsa file in the workingDir 
-115      fit -- the fit object 
-116      workingDir -- the directory to put all the generated files 
-117      rootName -- The rootName for the files, etc rootName.EXP, rootName.gsa 
-118      index -- the index of the data in the fit to be exported 
-119      return no return value 
-120      ''' 
-121      tmpDir = tempfile.mkdtemp() 
-122      # Export the supporting files from pattern: data file, MFIL (gsas only),  
-123      # instrument file, etc 
-124      patterns = fit.getObject('Pattern') 
-125       
-126      # dump the instrument file, MFIL, and data files into the directory 
-127      dataFiles = [] 
-128      for bid, pt in enumerate(patterns): 
-129          instFilePath = fit.dumpInstrumentFile(tmpDir, index, bid) 
-130          fit.dumpIncidentSpectrumFile(tmpDir, index, bid) 
-131   
-132          dataFilePath = fit.dumpDataFile(tmpDir, index, bid) 
-133          df = DataFile(dataFilePath, fit.getEngineType()) 
-134          dataFiles.append(os.path.basename(df.prepDataFile(tmpDir, instFilePath))) 
-135           
-136      # export the exp engine file 
-137      ds = fit.get('enginefile') 
-138       
-139      expFile = EXPFile(expdata = str(ds[index])) 
-140      # Get number of patterns 
-141      numPatterns = len(fit.getObject("Pattern")) 
-142      for ii in range(numPatterns): 
-143          if dataFiles[ii]: 
-144              # histogram key generator 
-145              keybase = ('HST%i' % (ii + 1),) 
-146              hstkey = lambda *a : keybase + a 
-147              # histogram name 
-148              #expFile.setValue(hstkey("HNAM"), pattern.get("HNAM")) 
-149              # histogram data file 
-150              expFile.setValue(hstkey("HFIL"), dataFiles[ii]) 
-151               
-152      expFile.write(os.path.join(tmpDir, rootName+'.EXP')) 
-153       
-154      return tmpDir 
-
        155   
-
        156 -def exportEngineFile(fit, exportDir, rootName, index): 
-
        157      '''Save the EXP file based on user selections and inputs 
-158      fit - the fit object 
-159      exportDir - the directory to export the files 
-160      rootName - the root name of the files to separate files for different datasets 
-161      index - the index of the file''' 
-162      try: 
-163          if fit.getEngineType() == 'gsas': 
-164              tmpDir = __generateEXPFile(fit, rootName, index) 
-165          elif fit.getEngineType() == 'fullprof': 
-166              tmpDir = __generatePcrFile(fit, rootName, index) 
-167      except Exception, e: 
-168          if GLOBALS.isDebug: 
-169              UTIILS.printDebugInfo() 
-170          else: 
-171              raise SrrRunTimeError('Error generating engine files:' + e.message) 
-172      # copy out the exp file and data file 
-173      fileList = [os.path.join(tmpDir, f)  
-174                  for f in os.listdir(tmpDir)] 
-175       
-176      for f in fileList: 
-177          shutil.copyfile(f, os.path.join(exportDir,os.path.basename(f))) 
-178      try: 
-179          shutil.rmtree(tmpDir) 
-180      except Exception, e: 
-181          print e.message 
-
        182       
-
        183 -def __generatePcrFile(fit, rootName, index): 
-
        184      '''generate the pcr and data file in the workingDir 
-185      fit -- the fit object 
-186      rootName -- The rootName for the files, etc rootName.pcr, rootName.dat 
-187      index -- the index of the data in the fit to be exported 
-188      return the extension name for the data file 
-189      ''' 
-190       
-191      tmpDir = tempfile.mkdtemp() 
-192           
-193      patterns = fit.getObject('Pattern') 
-194      dataFiles = [] 
-195      for bid, pt in enumerate(patterns): 
-196          dataFilePath = fit.dumpDataFile(tmpDir, index, bid) 
-197          dataFiles.append(os.path.basename(dataFilePath)) 
-198           
-199      enginefit = fit.owner.exportEngineFit(fit, index) 
-200       
-201      # change the data file path in the engine fit 
-202      ef = copy.deepcopy(enginefit) 
-203      for bid, pattern in enumerate(ef.get('Pattern')): 
-204          pattern.set('Datafile', dataFiles[bid]) 
-205           
-206      pcrFileWriter(ef, str(os.path.join(tmpDir, rootName+'.pcr')), [], 'r') 
-207       
-208      return tmpDir 
-
        209   
-
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        Module fitrt

        source code

        - - - - - - - - - -
        - Classes
        -   - - FitRT
        - FitRT provides the runtime control of refinements. -
        - - - - - - - - - - - - -
        - Variables
        -   - - __id__ = '$Id: fitrt.py 6626 2011-06-07 08:32:48Z yshang $' -
        -   - - __package__ = 'diffpy.srrietveld' -
        -

        Imports: - DataFile, - FPError, - GLOBALS, - GSASError, - Refinement, - SrrRunTimeError, - UTILS, - copy, - os, - printWarning, - shutil, - tempfile -


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        -

        Source Code for Module diffpy.srrietveld.fitrt

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2009 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Wenduo Zhou, Peng Tian, Jiwu Liu 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14   
- 15  __id__ = "$Id: fitrt.py 6626 2011-06-07 08:32:48Z yshang $" 
- 16   
- 17  import tempfile, shutil, copy, os 
- 18  from diffpy.srrietveld.exceptions import SrrRunTimeError 
- 19  from diffpy.refinementdata.refinement import Refinement 
- 20  from diffpy.pyfullprof.exception import RietException as FPError 
- 21  from diffpy.pygsas.exception import RietException as GSASError 
- 22  from diffpy.srrietveld.gui import srrguiglobals as GLOBALS  
- 23  from diffpy.srrietveld.utility import printWarning 
- 24  from diffpy.srrietveld.convert.datafile import DataFile 
- 25  import diffpy.srrietveld.utility as UTILS 
- 26   
-
         27 -class FitRT(object): 
-
         28      """FitRT provides the runtime control of refinements. It uses two basic ways 
- 29      to run a refinement, either step by step or finish everything by one call. 
- 30   
- 31      Data member: 
- 32   
- 33          fit       -- a diffpy.refinementdata.Refinement object that stores a fit 
- 34          strategy  -- a refine strategy to be applied 
- 35          index     -- the index to a single fit (if multiple fits are saved 
- 36                       together as an array) 
- 37          enginefit -- the engine fit object 
- 38          step      -- record the refinement step 
- 39          tempDir   -- the working folder 
- 40          workdingDir -- the current working directory 
- 41      """ 
-
         42 -    def __init__(self, job, fit,index=None): 
-
         43          """ Initialization. 
- 44   
- 45          job       -- the job this fitrt belonged to 
- 46          fit       -- a diffpy.refinementdata.Refinement object that stores a fit 
- 47          index     -- the index to a single fit (if multiple fits are saved 
- 48                       together as an array) 
- 49          """ 
- 50          self.fit = fit 
- 51          self.job = job 
- 52           
- 53          self.index = index 
- 54   
- 55          self.enginefit = None 
- 56          self.step = 0 
- 57          # temp working directory 
- 58          self.tempDir = None 
- 59          # main working directory 
- 60          self.workingDir = os.getcwd() 
- 61          # the strategy may be enabled temporarily even when the global variable 
- 62          # is false 
- 63          self.isStrategyEnabled = GLOBALS.isStrategyEnabled 
- 64   
- 65          return 
-
         66   
-
         67 -    def __setStrategy(self, isStrategyEnabled): 
-
         68          '''Set the strategy based on the global settings''' 
- 69          if isStrategyEnabled: 
- 70              self.strategy = copy.deepcopy(self.fit.getPyObj("Strategy")) 
- 71          else: 
- 72              self.strategy = self.fit.getOneStepStrategy() 
- 73           
- 74          return 
-
         75   
-
         76 -    def run(self, isStrategyEnabled = False, continuous=True): 
-
         77          """Run the refinement according to its strategy. 
- 78           
- 79          isStrategyEnabled -- if the strategy is enabled  
- 80           
- 81          continuous  -- run the whole refinement continuously or not 
- 82   
- 83          return: True if the refinement finished. False if not. 
- 84          """ 
- 85   
- 86           
- 87          self.isStrategyEnabled = isStrategyEnabled 
- 88   
- 89          # Prepare 
- 90          if self.prepare(): 
- 91              # FIXME: if fit is built from a exp/pcr file, dry run should be skipped 
- 92              try: 
- 93                  os.chdir(self.tempDir) 
- 94                  # fix all parameters 
- 95                  self.enginefit.fixAll() 
- 96                  self.enginefit.refine(cycle=5, srtype="l", 
- 97                      mode="refine", signature=["dry", '.']) 
- 98                   
- 99              except (FPError, GSASError), e: 
-100                  self.fit.setStatus(Refinement.ERROR, self.index) 
-101                  self.enginefit = None 
-102                  self.tempDir = None 
-103                  os.chdir(self.workingDir) 
-104                  self.clean() 
-105                  UTILS.printWarning(e.message) 
-106                  # in this case, do not go on. 
-107                  return True 
-108   
-109              GLOBALS.project.updateFit(self) 
-110              if not continuous: 
-111                  return False 
-112           
-113          else: 
-114              self.fit.setStatus(Refinement.ERROR, self.index) 
-115              self.enginefit = None 
-116              self.tempDir = None 
-117              os.chdir(self.workingDir) 
-118              self.clean() 
-119              # in this case, do not go on. 
-120              return True 
-121   
-122          # Run the strategy 
-123          self.__setStrategy(isStrategyEnabled) 
-124           
-125          while self.step < len(self.strategy): 
-126               
-127              try: 
-128                  # when refine diverges, 
-129                  self.refineSingleStep() 
-130              except (FPError, GSASError), e: 
-131                  self.fit.setStatus(Refinement.ERROR, self.index) 
-132                  self.enginefit = None 
-133                  self.tempDir = None 
-134                  os.chdir(self.workingDir) 
-135                  self.clean() 
-136                  return True 
-137   
-138              GLOBALS.project.updateFit(self) 
-139              self.step += 1 
-140               
-141              if not continuous: 
-142                  break 
-143   
-144          # Not finish yet 
-145          if self.step < len(self.strategy): 
-146           
-147              os.chdir(self.workingDir) 
-148              return False 
-149   
-150          self.fit.setStatus(self.fit.FINISHED, self.index) 
-151           
-152          os.chdir(self.workingDir) 
-153          self.clean() 
-154               
-155          return True 
-
        156   
-157  #------------------------------------------------------------------------------ 
-158       
-
        159 -    def prepare(self): 
-
        160          """Prepare the refinement, consisting of three steps: 
-161          1. Check if the engine fit object is available 
-162          2. Create temporary folder for running 
-163          3. Generate the data file 
-164   
-165          return: True if it runs sucessfully, otherwise False. 
-166          """ 
-167          #NOTE: if tempDir is created, the preparation should have been done already. 
-168          if self.tempDir: 
-169              return False 
-170   
-171          # A. check if my engine fit is available 
-172          if self.enginefit is None: 
-173              self.enginefit =  self.fit.owner.exportEngineFit(self.fit, self.index) 
-174   
-175          # B. Backup Directory 
-176          self.tempDir = tempfile.mkdtemp() 
-177   
-178          # C. Generate the datafile 
-179          patterns = self.fit.getObject('Pattern') 
-180           
-181          #check the engine type 
-182          engineName = self.fit.getEngineType() 
-183           
-184          # loop through all tbe patterns and dump the files into the temp folder 
-185           
-186          for bankid, pattern in enumerate(patterns): 
-187               
-188              ds = pattern.get('Instrumentfile') 
-189              if ds is not None:  
-190                  instFilePath = self.fit.findFileFromDataset(ds, self.index) 
-191              else: instFilePath = None 
-192               
-193              for param in ['Datafile', 'MFIL']: 
-194                  # convert to gsas file  
-195                  ds = pattern.get(param) 
-196                   
-197                  if ds is None: 
-198                      if param == "Datafile": 
-199                          __msg = 'The data file path is not specified. ' 
-200                          UTILS.printWarning(__msg) 
-201                          return False 
-202                      else: 
-203                          continue 
-204                   
-205                  filepath = self.fit.findFileFromDataset(ds, self.index) 
-206                   
-207                  if filepath: 
-208                      # get the file abs path from the rel path stored, and the base 
-209                      # path of the fit object 
-210                      filepath = os.path.abspath( 
-211                                                 os.path.join(GLOBALS.project.basepath,  
-212                                                              filepath) 
-213                                                 ) 
-214                  else: 
-215                      if param == 'Datafile': 
-216                          __msg = 'The data file is not found. ' 
-217                          UTILS.printWarning(__msg) 
-218                          return False 
-219                      else: 
-220                          continue 
-221                   
-222                  dataFile = DataFile(filepath = filepath, engine = engineName) 
-223                   
-224                  filepath = dataFile.prepDataFile(self.tempDir, 
-225                                                     instFilePath) 
-226                       
-227                  # the data file name may be updated, change the file name  
-228                  # in engine fit 
-229                  engPattern = self.enginefit.Pattern.get(bankid) 
-230                  if hasattr(engPattern, param): 
-231                      engPattern.set( param, os.path.basename(filepath) ) 
-232                  else: 
-233                      if param == "Datafile": 
-234                          __msg = 'The data file path is not set in the engine file. ' 
-235                          UTILS.printWarning(__msg) 
-236                          return False 
-237           
-238          return True 
-
        239   
-
        240 -    def clean(self): 
-
        241          '''Clean up after each refinement''' 
-242          from diffpy.srrietveld.gui.srrguiglobals import isDebug 
-243          if not isDebug: # only remove the tmp directories when not debugging 
-244              if self.tempDir: 
-245                  from shutil import rmtree 
-246                  from os import path 
-247                  if path.exists(self.tempDir): 
-248                      rmtree(self.tempDir) 
-249           
-250          return 
-
        251   
-
        252 -    def prepareFile(self, fid, engineName, bankid = None, instFilePath = None): 
-
        253          """Write or move data/instrument files in running/tmp directory 
-254   
-255          enginename -- the type of engine, can be either gsas or fullprof 
-256          fid -- the file id 
-257          bankid -- the bankid, used to convert the file format 
-258          instFilePath -- The instrument file path 
-259           
-260          return the file name 
-261          """ 
-262          from hashlib import sha1 
-263          #FIXME:The datafile converter does not take bank id other htan 1 so far 
-264          bankid = 1 
-265           
-266          from diffpy.srrietveld.addon.datafile import DataFileConverter as DFC 
-267           
-268          fileList = GLOBALS.project.getObject('SourceFileList') 
-269           
-270          fileObj = fileList.findFileByID(fid) 
-271           
-272          # dump the file content to the tempDir with the file name saved 
-273          # in fileObj.fileName 
-274          fileObj.dump(self.tempDir) 
-275           
-276          oldPath = os.path.join(self.tempDir, fileObj.fileName) 
-277           
-278          # convert the fullprof type file to gsas 
-279          root, ext = os.path.splitext(fileObj.fileName) 
-280          if engineName == 'gsas': 
-281               
-282              if ext.lower() in [".chi", ".dat", ".txt"]: 
-283                   
-284                  fileName = root + '.gsa' 
-285                  newPath = os.path.join(self.tempDir, fileName) 
-286                   
-287                  #check if the file already exist 
-288   
-289                  if os.path.isfile(newPath) and \ 
-290                  fileObj.fid == sha1(open(newPath, 'rb').read()).hexdigest(): 
-291                      __message = "A different file with same name exist. " + \ 
-292                      "will be replaced with the new one" 
-293                      print __message 
-294                   
-295                  dfc = DFC(oldPath) 
-296                  # FIXME: only export the first bank? 
-297                  dfc.toGSASFile(oldPath, newPath, bankid) 
-298   
-299   
-300          if engineName == 'fullprof': 
-301              fileName = root + '.dat' 
-302              newPath = os.path.join(self.tempDir, fileName) 
-303               
-304              if ext.lower() in [".chi", ".gsa", ".gda", "fxye"]: 
-305                  if instFilePath is not None: 
-306                      instFid = sha1(open(instFilePath, 'rb').read()).hexdigest() 
-307                   
-308                  if ext.lower() != '.chi' and fid != instFid: 
-309                      __warningMsg = 'To convert GSAS data file, installation of ' + \ 
-310                      'GSAS is needed and an instrument file is required. ' 
-311                       
-312                      printWarning(__warningMsg) 
-313                  # FIXM: convert gsas data file name to fullprof data file name 
-314                  # search the local directory for EXP files, may implement a  
-315                  # better algrethm 
-316                  dfc = DFC(oldPath, instFilePath) 
-317                  import glob 
-318                  desfile = os.path.join(os.getcwd(), "*.EXP") 
-319                  for fn in glob.glob(desfile): 
-320                      expfilename = fn 
-321                  if expfilename: 
-322                      dfc.toFPFile(oldPath, newPath, bankid, expfilename) 
-323                  elif ext.lower() == '.chi': 
-324                      dfc.toFPFile(oldPath, newPath, bankid) 
-325                  else: 
-326                      __warningMsg = "To convert GSAS data file, GSAS is needed " + \ 
-327                      "to be installed and an instrument file is required." + \ 
-328                      "The gsas data file can not be converted. The refinment may " + \ 
-329                      "not run. " 
-330                      printWarning(__warningMsg) 
-331                   
-332              if ext.lower() not in [".chi", ".gsa", ".gda", "fxye", '.dat', '.raw']: 
-333                  __warningMsg = 'Data file extension is not recognized. The ' + \ 
-334                  'refinement may not run correctly. ' 
-335                  printWarning(__warningMsg) 
-336                       
-337          return fileName 
-
        338   
-339   
-
        340 -    def refineSingleStep(self): 
-
        341          """Refine a single step in the strategy list. 
-342          """ 
-343          import re 
-344   
-345          # Set addlist + currenttuple 
-346          strategystep = copy.deepcopy(self.strategy[self.step]) 
-347          method, paramlist = strategystep.items()[0] 
-348   
-349          headparam = paramlist[0][0] 
-350          refmsg = "\nRefinable Parameter = %-10s   Over-all Step = %-5s  Refine-Type = %-10s\n"% \ 
-351                  (headparam, self.step, method) 
-352          refmsg += "%-10sNew Variables: \n"% ("") 
-353          for param in paramlist: 
-354              # Set constraint 
-355              fullpath = param[0] 
-356              formula = param[2] 
-357              self.setConstraint(fullpath, formula) 
-358              refmsg += "%-20s%-20s:  %-20s\n"% ("", fullpath, formula) 
-359          print refmsg 
-360   
-361          # Refine and Save 
-362          sig = str(self.step) + "_" + headparam.split(".")[-1] 
-363          '''Windows directory name can not include following chars: 
-364          < (less than)> (greater than) : (colon) " (double quote) 
-365           / (forward slash) \ (backslash) | (vertical bar or pipe) 
-366           ? (question mark) * (asterisk)''' 
-367          sig = sig.replace(':','.') 
-368          fitsummary = self.enginefit.refine(40, srtype = method.lower()[0], 
-369                  mode = "refine", signature=[sig, '.']) 
-370   
-371          # Screen Output 
-372          chi2 = fitsummary.getResidueValue(-1, residname="Chi2") 
-373          rwp = fitsummary.getResidueValue(-1, residname="Rwp") 
-374          re = fitsummary.getResidueValue(-1, residname="Re") 
-375   
-376          print "%-10s:  Chi2 = %-15s   Rp = %-15s  Rexp = %-15s"% (method, chi2, rwp, re) 
-377          print ">>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>" 
-378   
-379          return 
-
        380   
-381   
-
        382 -    def setConstraint(self, key, formula): 
-
        383          """ Turn on the refinement flag for parameters 
-384          """ 
-385          fitname = key.split(".")[0] 
-386          key = key.replace(fitname+".", "") 
-387          try: 
-388              # Set the int value 
-389              newvalue = int(formula) 
-390          except: 
-391              # Set the float value 
-392              try: 
-393                  newvalue = float(formula) 
-394              except: 
-395                  self.enginefit.setConstraintByPath(key, formula) 
-396                  return 
-397          self.enginefit.setByPath(key, newvalue) 
-398          return 
-
        399  # End Of File 
-400   
-
        -
        - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module fitrt :: - Class FitRT - - - - - -
        [frames] | no frames]
        -
        - -

        Class FitRT

        source code

        -
        -object --+
-         |
-        FitRT
-
        - -
        -
        -FitRT provides the runtime control of refinements. It uses two basic ways
-to run a refinement, either step by step or finish everything by one call.
-
-Data member:
-
-    fit       -- a diffpy.refinementdata.Refinement object that stores a fit
-    strategy  -- a refine strategy to be applied
-    index     -- the index to a single fit (if multiple fits are saved
-                 together as an array)
-    enginefit -- the engine fit object
-    step      -- record the refinement step
-    tempDir   -- the working folder
-    workdingDir -- the current working directory
-
-
        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - job, - fit, - index=None)
        - Initialization.        		 - source code - -
        - -
        -   - - - - - - -
        clean(self)
        - Clean up after each refinement        		 - source code - -
        - -
        -   - - - - - - -
        prepare(self)
        - Prepare the refinement, consisting of three steps:        		 - source code - -
        - -
        -   - - - - - - -
        prepareFile(self, - fid, - engineName, - bankid=None, - instFilePath=None)
        - Write or move data/instrument files in running/tmp directory        		 - source code - -
        - -
        -   - - - - - - -
        refineSingleStep(self)
        - Refine a single step in the strategy list.        		 - source code - -
        - -
        -   - - - - - - -
        run(self, - isStrategyEnabled=False, - continuous=True)
        - Run the refinement according to its strategy.        		 - source code - -
        - -
        -   - - - - - - -
        setConstraint(self, - key, - formula)
        - Turn on the refinement flag for parameters        		 - source code - -
        - -
        -

        Inherited from object: - __delattr__, - __format__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__, - __sizeof__, - __str__, - __subclasshook__ -

        -
        - - - - - - - - - -
        - Properties
        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - job, - fit, - index=None) -
        (Constructor) -

        -         		source code  -
        - - 
        -Initialization.
-
-job       -- the job this fitrt belonged to
-fit       -- a diffpy.refinementdata.Refinement object that stores a fit
-index     -- the index to a single fit (if multiple fits are saved
-             together as an array)
-
-
        -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        prepare(self) -

        -         		source code  -
        - -

        Prepare the refinement, consisting of three steps:

        -
          -
        1. - Check if the engine fit object is available -
          2. -
        2. - Create temporary folder for running -
          3. -
        3. - Generate the data file -

          return: True if it runs sucessfully, otherwise False.

          -
          4. -
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        prepareFile(self, - fid, - engineName, - bankid=None, - instFilePath=None) -

        -         		source code  -
        - -

        Write or move data/instrument files in running/tmp directory

        -

        enginename -- the type of engine, can be either gsas or fullprof fid - -- the file id bankid -- the bankid, used to convert the file format - instFilePath -- The instrument file path

        -

        return the file name

        -
        -
        -
        -
        - -
        - -
        - - -
        -

        run(self, - isStrategyEnabled=False, - continuous=True) -

        -         		source code  -
        - -

        Run the refinement according to its strategy.

        -

        isStrategyEnabled -- if the strategy is enabled

        -

        continuous -- run the whole refinement continuously or not

        -

        return: True if the refinement finished. False if not.

        -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - -
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        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:57 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.objectinfo-module.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.objectinfo-module.html deleted file mode 100644 index 0793e79b..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.objectinfo-module.html +++ /dev/null @@ -1,212 +0,0 @@ - - - - - diffpy.srrietveld.objectinfo - - - - - - - - - - - - - - - - - - - - - -
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        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module objectinfo - - - - - -
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        -
        - -

        Module objectinfo

        source code

        -

        This module contains the definition of the ObjectInfo class.

        - - - - - - - - - - -
        - Classes
        -   - - ObjectInfo
        - ObjectInfo uses the info in the engine definition to define what is - allowed to be set in an object, namely the legal content of an - object. -
        - - - - - - - - - -
        - Functions
        -   - - - - - - -
        setObjectInfo(refinementObj)
        - Set the object info for the engine.        		 - source code - -
        - -
        - - - - - - - - - - - - -
        - Variables
        -   - - __id__ = '$Id: objectinfo.py 6718 2011-08-23 21:33:20Z yshang $' -
        -   - - __package__ = None -
        - - - - - - -
        - Function Details
        - -
        - -
        - - -
        -

        setObjectInfo(refinementObj) -

        -         		source code  -
        - -

        Set the object info for the engine.

        -
        -
        Parameters:
        -
          -
        • refinementObj (Refinement object) - the ObjectInfo will be generated and set to the refinementObj
          • -
        -
        Returns:
        -
        no return value
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - -
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        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:57 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.objectinfo-pysrc.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.objectinfo-pysrc.html deleted file mode 100644 index ae1b7ec3..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.objectinfo-pysrc.html +++ /dev/null @@ -1,241 +0,0 @@ - - - - - diffpy.srrietveld.objectinfo - - - - - - - - - - - - - - - - - - - - - -
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        -

        Source Code for Module diffpy.srrietveld.objectinfo

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2009 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Jiwu Liu, Yingrui Shang 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14   
- 15  """This module contains the definition of the ObjectInfo class. """ 
- 16   
- 17  __id__ = "$Id: objectinfo.py 6718 2011-08-23 21:33:20Z yshang $" 
- 18   
-
         19 -class ObjectInfo: 
-
         20      """ 
- 21      ObjectInfo uses the info in the engine definition to define what is allowed 
- 22      to be set in an object, namely the legal content of an object. 
- 23      """ 
-
         24 -    def __init__(self, cls=None): 
-
         25          '''Initialization. 
- 26           
- 27          @type cls:     an engine class 
- 28          @param cls:    the class of the engine fit object 
- 29          @return:    no value 
- 30          ''' 
- 31          self.cls = cls 
- 32          return 
-
         33           
-
         34 -    def listParams(self): 
-
         35          """ 
- 36          List all the parameters that can be refined by the engine. 
- 37           
- 38          @return:     a list of refinable parameter names 
- 39          """ 
- 40          params = [] 
- 41          if self.cls is None: 
- 42              return params 
- 43          for name, info in self.cls.ParamDict.items(): 
- 44              if info.__class__.__name__ == 'RefineInfo': 
- 45                  params.append(name) 
- 46          for name, info in self.cls.ParamListDict.items(): 
- 47              if info.__class__.__name__ == 'RefineInfo': 
- 48                  params.append(name) 
- 49           
- 50          return params 
-
         51   
-
         52 -    def getDescription(self, paramname): 
-
         53          """ 
- 54          Get the description of a parameter. 
- 55           
- 56          @type paramname:    string 
- 57          @param paramname:    parameter name 
- 58          @return: a string to describe the parameter 
- 59          """ 
- 60          if paramname in self.cls.ParamDict: 
- 61              return self.cls.ParamDict[paramname].description 
- 62          if paramname in self.cls.ParamListDict: 
- 63              return self.cls.ParamListDict[paramname].description 
- 64           
- 65          return '' 
-
         66           
-
         67 -    def get(self,paramname): 
-
         68          """ 
- 69          Get the full info of a parameter. 
- 70           
- 71          @type paramname:    string 
- 72          @param paramname:    parameter name 
- 73          @return: an Info object defined in the engine. 
- 74          """ 
- 75          if paramname in self.cls.ParamDict: 
- 76              return self.cls.ParamDict[paramname] 
- 77          if paramname in self.cls.ParamListDict: 
- 78              return self.cls.ParamListDict[paramname] 
- 79           
- 80          return None 
-
         81       
-
         82 -def setObjectInfo(refinementObj): 
-
         83      """ 
- 84      Set the object info for the engine. 
- 85       
- 86      @type refinementObj:    Refinement object 
- 87      @param refinementObj:    the ObjectInfo will be generated and set to the 
- 88                               refinementObj 
- 89      @return:    no return value 
- 90      """ 
- 91      try: 
- 92          engineclassname = refinementObj.getAttr('rietveldcls') 
- 93          modulename, classname = engineclassname.rsplit('.', 1) 
- 94          module =  __import__(modulename, globals(), locals(), [classname],  -1) 
- 95          engineclass = getattr(module,  classname) 
- 96          refinementObj.info = ObjectInfo(engineclass) 
- 97      except (ImportError, AttributeError, ValueError): 
- 98          refinementObj.info = ObjectInfo() 
- 99           
-100      for myobjchild in refinementObj.objects: 
-101          setObjectInfo(myobjchild) 
-102       
-103      return 
-
        104   
-
        -
        - - - - - - - - - - - - - - - - -
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        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.objectinfo.ObjectInfo-class.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.objectinfo.ObjectInfo-class.html deleted file mode 100644 index 529912d2..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.objectinfo.ObjectInfo-class.html +++ /dev/null @@ -1,302 +0,0 @@ - - - - - diffpy.srrietveld.objectinfo.ObjectInfo - - - - - - - - - - - - - - - - - - - - - -
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        - - Package diffpy :: - Package srrietveld :: - Module objectinfo :: - Class ObjectInfo - - - - - -
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        -
        - -

        Class ObjectInfo

        source code

        -

        ObjectInfo uses the info in the engine definition to define what is - allowed to be set in an object, namely the legal content of an - object.

        - - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - cls=None)
        - Initialization.        		 - source code - -
        - -
        -   - - - - - - -
        get(self, - paramname)
        - Get the full info of a parameter.        		 - source code - -
        - -
        -   - - - - - - -
        getDescription(self, - paramname)
        - Get the description of a parameter.        		 - source code - -
        - -
        -   - - - - - - -
        listParams(self)
        - List all the parameters that can be refined by the engine.        		 - source code - -
        - -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - cls=None) -
        (Constructor) -

        -         		source code  -
        - -

        Initialization.

        -
        -
        Parameters:
        -
          -
        • cls (an engine class) - the class of the engine fit object
          • -
        -
        Returns:
        -
        no value
        -
        -
        -
        - -
        - -
        - - -
        -

        get(self, - paramname) -

        -         		source code  -
        - -

        Get the full info of a parameter.

        -
        -
        Parameters:
        -
          -
        • paramname (string) - parameter name
          • -
        -
        Returns:
        -
        an Info object defined in the engine.
        -
        -
        -
        - -
        - -
        - - -
        -

        getDescription(self, - paramname) -

        -         		source code  -
        - -

        Get the description of a parameter.

        -
        -
        Parameters:
        -
          -
        • paramname (string) - parameter name
          • -
        -
        Returns:
        -
        a string to describe the parameter
        -
        -
        -
        - -
        - -
        - - -
        -

        listParams(self) -

        -         		source code  -
        - -

        List all the parameters that can be refined by the engine.

        -
        -
        Returns:
        -
        a list of refinable parameter names
        -
        -
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        - -

        Module paramnames

        source code

        -

        This module contains the parameter name mapping for GSAS and FullProf - The key is the access name of the parameters, and the value is the path - of the parameter, from the logic parent object.

        - - - - - - - - - - - - - - - - -
        - Variables
        -   - - PARAMNAMES = {'fullprof': {'Biso': 'AtomicDisplacementFactor.B... -
        -   - - __id__ = '$Id: paramnames.py 6728 2011-08-26 21:54:11Z yshang $' -
        -   - - __package__ = None -
        - - - - - - -
        - Variables Details
        - -
        - -
        -

        PARAMNAMES

        - -
        -
        -
        -
        Value:
        - 
        -{'fullprof': {'Biso': 'AtomicDisplacementFactor.Biso',
-              'Rp': 'Rp',
-              'Rwp': 'Rwp',
-              'Tmax': 'Thmin',
-              'Tmin': 'Thmax',
-              'Uiso': 'AtomicDisplacementFactor.Uiso',
-              'X': 'X',
-              'Y': 'Y',
-...
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        -

        Source Code for Module diffpy.srrietveld.paramnames

        -
        -  1  #!/usr/bin/env python 
-  2  ######################################################################## 
-  3  # 
-  4  # diffpy.refinementdata - by DANSE Diffraction group 
-  5  #                         Simon J. L. Billinge 
-  6  #                         (c) 2009 Trustees of the Columbia University 
-  7  #                         in the City of New York. All rights reserved. 
-  8  # 
-  9  # File coded by:   Yingrui Shang 
- 10  # 
- 11  # See AUTHORS.txt for a list of people who contributed. 
- 12  # See LICENSE.txt for license information. 
- 13  # 
- 14  ######################################################################## 
- 15   
- 16  ''' 
- 17  This module contains the parameter name mapping for GSAS and FullProf 
- 18  The key is the access name of the parameters, and the value is the path of the  
- 19  parameter, from the logic parent object. 
- 20   
- 21  ''' 
- 22   
- 23  # module version 
- 24  __id__ = '$Id: paramnames.py 6728 2011-08-26 21:54:11Z yshang $' 
- 25   
- 26  PARAMNAMES = { 
- 27      'gsas':{ 
- 28              #params under refinement 
- 29              'chi2':'Chi2', 
- 30              'ncycle':'NCY', 
- 31              #params under phase 
- 32              'spacegroup':'Spacegroup', 
- 33              'a':'a', 
- 34              'b':'b', 
- 35              'c':'c', 
- 36              'alpha':'alpha', 
- 37              'beta':'beta', 
- 38              'gamma':'gamma', 
- 39              #params under pattern 
- 40              'datafile':'Datafile', 
- 41              'datafile_absolute':'Datafile_abspath', 
- 42              'zero':'ZERO', 
- 43              'scale':'HSCALE', 
- 44              'lambda':'LAM1', 
- 45              'lambda1':'LAM1', 
- 46              'lambda2':'LAM2', 
- 47              'Rp':'Rp', 
- 48              'Rwp':'Rwp', 
- 49              'ratio':'KRATIO', 
- 50              'step':'Step', 
- 51              'Tmin':'TMIN', 
- 52              'Tmax':'TMAX', 
- 53              'polar':'POLA', 
- 54              'polar_type':'IPOLA', 
- 55              'background_type':'BTYP', 
- 56              'background_coefficients':'Background.BACK', 
- 57              'used':'ISUSED', 
- 58              'xobs':'xobs', 
- 59              'yobs':'yobs', 
- 60              'ycal':'ycal', 
- 61              'excluded_region':'ExcludedRegion', 
- 62              #params under exluded region 
- 63              'begin':'begin', 
- 64              'end':'end', 
- 65              #params under profile 
- 66              'cut_off':'Cutoff', 
- 67              'profile_type':'PTYP', 
- 68              'profile_parameters':'Parameters', 
- 69              #params under atom 
- 70              'name':'Name', 
- 71              'type':'Typ', 
- 72              'occupation':'occ', 
- 73              'X':'X', 
- 74              'Y':'Y', 
- 75              'Z':'Z', 
- 76              'Uiso':'AtomicDisplacementFactor.Uiso', 
- 77              'Biso':'AtomicDisplacementFactor.Biso', 
- 78               
- 79      }, 
- 80      'fullprof':{ 
- 81              #params under refinement 
- 82              'chi2':'Chi2', 
- 83              'ncycle':'NCY', 
- 84              #params under phase 
- 85              'space_group':'Spacegroup', 
- 86              'a':'a', 
- 87              'b':'b', 
- 88              'c':'c', 
- 89              'alpha':'alpha', 
- 90              'beta':'beta', 
- 91              'gamma':'gamma', 
- 92              #params under pattern 
- 93              'data_file':'Datafile', 
- 94              'data_file_absolute':'Datafile_abspath', 
- 95              'zero':'Zero', 
- 96              'scale':'Scale', 
- 97              'lambda':'Lambda', 
- 98              'lambda1':'Lambda1', 
- 99              'lambda2':'Lambda2', 
-100              'step':'Step', 
-101              'ratio':'Ratio', 
-102              'Rp':'Rp', 
-103              'Rwp':'Rwp', 
-104              'Tmin':'Thmax', 
-105              'Tmax':'Thmin', 
-106              'polar':'LPFactor.Rpolarz', 
-107              'polar_type':'LPFactor.Ilo', 
-108              'background_type':'Nba', 
-109              'background_coefficients':'Background.BCK', 
-110              'used':'ISUSED', 
-111              'xobs':'xobs', 
-112              'yobs':'yobs', 
-113              'ycal':'ycal', 
-114              'excluded_region':'ExcludedRegion', 
-115              #params under exluded region 
-116              'begin':'begin', 
-117              'end':'end', 
-118              #params under profile 
-119              'cut_off':'Wdt', 
-120              'profile_type':'Npr', 
-121              'profile_parameters':'Parameters', 
-122              #params under atom 
-123              'name':'Name', 
-124              'type':'Typ', 
-125              'occupation':'occ', 
-126              'X':'X', 
-127              'Y':'Y', 
-128              'Z':'Z', 
-129              'Uiso':'AtomicDisplacementFactor.Uiso', 
-130              'Biso':'AtomicDisplacementFactor.Biso', 
-131      } 
-132  } 
-133   
-
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        Module pattern

        source code

        -

        This package contains the Pattern class in SrRietveld, which is an - script interface to access the structure information

        - - - - - - - - - - - - - -
        - Classes
        -   - - ExcludedRegion
        - This is a script interface of the excluded region, with access - functions to the begin and end parameters in the object -
        -   - - Pattern
        - Pattern inherits the Pattern class in diffpy.refinementdata. -
        - - - - - - - - - - - - - - - -
        - Variables
        -   - - PARAMNAMES = {'fullprof': {'Biso': 'AtomicDisplacementFactor.B... -
        -   - - __id__ = '$Id: pattern.py 6727 2011-08-26 21:53:10Z yshang $' -
        -   - - __package__ = 'diffpy.srrietveld' -
        -

        Imports: - BasePattern, - Refinable -


        - - - - - - -
        - Variables Details
        - -
        - -
        -

        PARAMNAMES

        - -
        -
        -
        -
        Value:
        - 
        -{'fullprof': {'Biso': 'AtomicDisplacementFactor.Biso',
-              'Rp': 'Rp',
-              'Rwp': 'Rwp',
-              'Tmax': 'Thmin',
-              'Tmin': 'Thmax',
-              'Uiso': 'AtomicDisplacementFactor.Uiso',
-              'X': 'X',
-              'Y': 'Y',
-...
-
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        -

        Source Code for Module diffpy.srrietveld.pattern

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2009 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Yingrui Shang 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14  """ 
- 15  This package contains the Pattern class in SrRietveld, which is an script interface 
- 16  to access the structure information 
- 17  """ 
- 18   
- 19  __id__ = "$Id: pattern.py 6727 2011-08-26 21:53:10Z yshang $" 
- 20   
- 21  from diffpy.refinementdata.pattern import Pattern as BasePattern 
- 22  from diffpy.refinementdata.refinable import Refinable 
- 23  from diffpy.srrietveld.paramnames import PARAMNAMES 
- 24   
-
         25 -class Pattern(BasePattern): 
-
         26      """ 
- 27      Pattern inherits the Pattern class in diffpy.refinementdata. Its basic  
- 28      data is the array of 2theta, time of flight, intensity, error. It may not  
- 29      have a list of parameters. It may have a file object which stores the original  
- 30      data.  
- 31       
- 32      data member: 
- 33           
- 34          xobs: the observed data 
- 35          yobs: the observed y data 
- 36          ycal: the refined y data 
- 37          refl: the reflection list 
- 38          srcfiles: the source files, including data files and source files  
- 39      """ 
- 40   
- 41   
-
         42 -    def __init__(self, owner, name=None,  handle=None, shape=None): 
-
         43              """Initialization 
- 44               
- 45              @type owner:    a data project 
- 46              @param owner:    the owner, which is usually a refinement. 
- 47              @type name:    string 
- 48              @param name     the name of the pattern 
- 49              @type handle:    a HDF5Handle object 
- 50              @param handle: a HDF5Handle pointing to the underlying HDF5 node.           
- 51       
- 52              A name is passed to the initialization method when creating a node. 
- 53               
- 54              A handle is passed to the inialization method in two cases: 
- 55                  1.  when loading from a HDF5 file; 
- 56                  2.  when creating a HDF5 file but the object is a hard link to  
- 57                      a preexisiting one. 
- 58                       
- 59              In the case when both name and handle are given, name will be simply ignored. 
- 60              In the case when neither name nor handle is given, an exception will be raised. 
- 61               
- 62              Usually in the scripting interface, users do not have to worry about the  
- 63              initialization 
- 64              """         
- 65              BasePattern.__init__(self, owner, name, handle, shape) 
- 66               
- 67              return 
-
         68       
-
         69 -    def getAbsoluteDataFile(self): 
-
         70          ''' 
- 71          Get the absolute data file path 
- 72           
- 73          @return:  the absolute data path strings 
- 74          ''' 
- 75          return self.getByPath(PARAMNAMES[self.getEngineType()]['data_file_absolute']) 
-
         76       
-
         77 -    def getBackgroundCoefficients(self): 
-
         78          ''' 
- 79          Get the background coefficients in a two dimensional array 
- 80           
- 81          @return: the background coefficient values in a two dimensional array 
- 82          ''' 
- 83          return self.getByPath(PARAMNAMES[self.getEngineType()]['background_coefficients']) 
-
         84   
-
         86          ''' 
- 87          Get the background coefficients standard deviations in a two dimensional array 
- 88           
- 89          @return: the background coefficient standard deviations in a two dimensional array 
- 90          ''' 
- 91          return self.getSigmaByPath(PARAMNAMES[self.getEngineType()]['background_coefficients']) 
-
         92       
-
         93 -    def getBackgroundType(self): 
-
         94          ''' 
- 95          Get the background type identification number. This number has different 
- 96          meanings in engines.  
- 97           
- 98          @return: an integer represent the type of the background function 
- 99          ''' 
-100          return self.getByPath(PARAMNAMES[self.getEngineType()]['background_type']).first() 
-
        101       
-
        102 -    def getDataFile(self): 
-
        103          ''' 
-104          Get the path of the data file.  
-105           
-106          @return: the data path strings 
-107          '''  
-108          return self.getByPath(PARAMNAMES[self.getEngineType()]['data_file']) 
-
        109       
-
        110 -    def getEngineType(self): 
-
        111          '''Get the engine type for this refinement 
-112       
-113          @return:    the string of the engine type, for example I{"gsas"} or I{"fullprof"}''' 
-114           
-115          return self.owner.owner.getEngineType() 
-
        116       
-
        117 -    def getPolarType(self): 
-
        118          ''' 
-119          Get the polarization type id numbers. These numbers have different meanings 
-120          in different engine files, please refer to the manual of the refinement engine.  
-121           
-122          @return: the Tmin of the pattern as float 
-123          ''' 
-124          return self.getByPath(PARAMNAMES[self.getEngineType()]['polar_type']) 
-
        125   
-
        126 -    def getLambda(self): 
-
        127          ''' 
-128          Get the refined wavelength value. In FullProf, there can be only one  
-129          lambda value can be refined 
-130           
-131          @return: the values of wavelength in angstroms 
-132          ''' 
-133          return self.getByPath(PARAMNAMES[self.getEngineType()]['lambda'])     
-
        134       
-
        135 -    def getLambdaSigma(self): 
-
        136          ''' 
-137          Get the refined wavelength standard deviation. In FullProf, there can be only one  
-138          lambda value can be refined 
-139           
-140          @return: the wavelength standard deviation 
-141          ''' 
-142          return self.getSigmaByPath(PARAMNAMES[self.getEngineType()]['lambda']) 
-
        143       
-
        144 -    def getLambda1(self): 
-
        145          ''' 
-146          Get the first wavelength value 
-147           
-148          @return: the values of the wavelength in angstroms 
-149          ''' 
-150          return self.getByPath(PARAMNAMES[self.getEngineType()]['lambda1']) 
-
        151       
-
        152 -    def getLambda1Sigma(self): 
-
        153          ''' 
-154          Get the first wavelength standard deviation 
-155           
-156          @return: the wavelength standard deviation 
-157          ''' 
-158          return self.getSigmaByPath(PARAMNAMES[self.getEngineType()]['lambda1']) 
-
        159       
-
        160 -    def getLambda2(self): 
-
        161          ''' 
-162          Get the second wavelength value 
-163           
-164          @return: the values of the wavelength in angstroms  
-165          ''' 
-166          return self.getByPath(PARAMNAMES[self.getEngineType()]['lambda2']) 
-
        167   
-
        168 -    def getLambda2Sigma(self): 
-
        169          ''' 
-170          Get the second wavelength standard deviation 
-171           
-172          @return: the wavelength standard deviation  
-173          ''' 
-174          return self.getSigmaByPath(PARAMNAMES[self.getEngineType()]['lambda2']) 
-
        175       
-
        177          ''' 
-178          Get the number of background coefficients. This is number is from the  
-179          dimensions of the background coefficients array  
-180           
-181          @return: the number of background coefficients 
-182          ''' 
-183          return len(self.getBackgroundCoefficients()[0]) 
-
        184       
-
        185 -    def getPolar(self): 
-
        186          ''' 
-187          Get the polarization factors 
-188           
-189          @return: the polarization factors 
-190          ''' 
-191          return self.getByPath(PARAMNAMES[self.getEngineType()]['polar']) 
-
        192       
-
        193 -    def getRp(self): 
-
        194          ''' 
-195          Get the Rp value of the refinement list 
-196           
-197          @return:    the values of Rp 
-198          ''' 
-199          return self.getByPath(PARAMNAMES[self.getEngineType()]['Rp']) 
-
        200       
-
        201 -    def getRwp(self): 
-
        202          ''' 
-203          Get the Rwp value of the refinement list 
-204           
-205          @return:    the values of Rwp 
-206          ''' 
-207          return self.getByPath(PARAMNAMES[self.getEngineType()]['Rwp']) 
-
        208       
-
        209 -    def getRatio(self): 
-
        210          ''' 
-211          Get the ratio value of the refinement list. These values are read from  
-212          the engine files, and not calculated in SrRietveld. 
-213           
-214          @return:    the values of ratios of intensities of lambda2 / lambda1 
-215          ''' 
-216          return self.getByPath(PARAMNAMES[self.getEngineType()]['ratio']) 
-
        217       
-
        218 -    def getScale(self): 
-
        219          ''' 
-220          Get the scale factor of the pattern 
-221           
-222          @return: the scale factor of the pattern as float 
-223          ''' 
-224          return self.getByPath(PARAMNAMES[self.getEngineType()]['scale']) 
-
        225       
-
        226 -    def getScaleSigma(self): 
-
        227          ''' 
-228          Get the scale factor standard deviation 
-229           
-230          @return: the scale factor standard deviation 
-231          ''' 
-232          return self.getSigmaByPath(PARAMNAMES[self.getEngineType()]['scale']) 
-
        233           
-
        234 -    def getStep(self): 
-
        235          ''' 
-236          Get the step values 
-237           
-238          @return: the step sizes 
-239          ''' 
-240          return self.getByPath(PARAMNAMES[self.getEngineType()]['step']) 
-
        241       
-
        242 -    def getTmin(self): 
-
        243          ''' 
-244          Get the Tmin of the pattern 
-245           
-246          @return: the Tmin of the pattern as float 
-247          ''' 
-248          return self.getByPath(PARAMNAMES[self.getEngineType()]['Tmin']) 
-
        249       
-
        250 -    def getUseFlag(self): 
-
        251          ''' 
-252          Get the use flag of this pattern. In GSAS a histogram can be flagged as  
-253          used (True) or unused (False). The pattern will be included in the  
-254          refinement only if its used. The pattern will always be used in a  
-255          FullProf refinement.  
-256           
-257          @return: the use flags (boolean) of this pattern in refinements  
-258          ''' 
-259          return self.getByPath(PARAMNAMES[self.getEngineType()]['used']) 
-
        260       
-
        261 -    def getTmax(self): 
-
        262          ''' 
-263          Get the Tmax of the pattern 
-264           
-265          @return: the Tmax of the pattern as float 
-266          ''' 
-267          return self.getByPath(PARAMNAMES[self.getEngineType()]['Tmax']) 
-
        268       
-
        269 -    def getXobs(self): 
-
        270          ''' 
-271          Get the observed x axis points. This parameters is only available after 
-272          the refinement is complete.   
-273           
-274          @return: a multi-dimensional array with the x axis points.     
-275          ''' 
-276          return self.getByPath(PARAMNAMES[self.getEngineType()]['xobs']) 
-
        277       
-
        278 -    def getYobs(self): 
-
        279          ''' 
-280          Get the observed y values. This parameters is only available after 
-281          the refinement is complete.   
-282           
-283          @return: a multi-dimensional array with the observed y values.     
-284          ''' 
-285          return self.getByPath(PARAMNAMES[self.getEngineType()]['yobs']) 
-
        286       
-
        287 -    def getYcal(self): 
-
        288          ''' 
-289          Get the calculated y values. This parameters is only available after 
-290          the refinement is complete.   
-291           
-292          @return: a multi-dimensional array with the calculated y values.     
-293          ''' 
-294          return self.getByPath(PARAMNAMES[self.getEngineType()]['ycal']) 
-
        295           
-
        296 -    def getZero(self): 
-
        297          ''' 
-298          Get the zero shift value for this pattern 
-299           
-300          @return: the zero shift value as float 
-301          ''' 
-302          return self.getByPath(PARAMNAMES[self.getEngineType()]['zero']) 
-
        303       
-
        304 -    def getZeroSigma(self): 
-
        305          ''' 
-306          Get the zero shift standard deviation 
-307           
-308          @return: the zero shift standard deviation 
-309          ''' 
-310          return self.getSigmaByPath(PARAMNAMES[self.getEngineType()]['zero']) 
-
        311       
-
        312 -    def listExcludedRegions(self): 
-
        313          ''' 
-314          Get the excluded regions as list  
-315          ''' 
-316          return [obj for obj in self.listObjects(recursively = True) if obj.name.startswith('ExcludedRegion[')] 
-
        317       
-
        318 -class ExcludedRegion(Refinable): 
-
        319      ''' 
-320      This is a script interface of the excluded region, with access functions to 
-321      the begin and end parameters in the object 
-322      ''' 
-
        323 -    def __init__(self, owner, name=None, handle=None, formula=None, variables=None, shape=None): 
-
        324          """Initialization. 
-325           
-326          @type owner:    a data project 
-327          @param owner:    the owner, which is usually a refinement. 
-328          @type name:    string 
-329          @param name     the name of the pattern 
-330          @type handle:    a HDF5Handle object 
-331          @param handle: a HDF5Handle pointing to the underlying HDF5 node.   
-332          @type formula:    string 
-333          @param formula:    a string of the function definition in C style 
-334          @type variables:    a space separated string 
-335          @param variables:    a space separated string of all variables  
-336   
-337          A name is passed to the initialization method when creating a node. 
-338           
-339          A handle is passed to the inialization method in two cases: 
-340              1.  when loading from a HDF5 file; 
-341              2.  when creating a HDF5 file but the object is a hard link to  
-342                  a preexisiting one. 
-343                   
-344          In the case when both name and handle are given, name will be simply ignored. 
-345          In the case when neither name nor handle is given, an exception will be raised. 
-346           
-347          Generally, in the scripting interface, users do not have to call this  
-348          constructor directly 
-349          """ 
-350          Refinable.__init__(self, owner, name, handle, shape) 
-351          return 
-
        352       
-
        353 -    def getBegin(self): 
-
        354          ''' 
-355          Get the begin values of the excluded region 
-356           
-357          @return: begin values 
-358          ''' 
-359          return self.getByPath(PARAMNAMES[self.getEngineType()]["begin"]) 
-
        360           
-
        361 -    def getEnd(self): 
-
        362          ''' 
-363          Get the end values of the excluded region 
-364           
-365          @return: end values 
-366          ''' 
-367          return self.getByPath(PARAMNAMES[self.getEngineType()]["end"]) 
-
        368   
-369           
-
        370 -    def getEngineType(self): 
-
        371          '''Get the engine type for this refinement 
-372           
-373          @return:    the string of the engine type, for example I{"gsas"} or I{"fullprof"}''' 
-374           
-375          return self.owner.owner.getEngineType() 
-
        376   
-
        -
        - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:58 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.pattern.ExcludedRegion-class.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.pattern.ExcludedRegion-class.html deleted file mode 100644 index e808a1e9..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.pattern.ExcludedRegion-class.html +++ /dev/null @@ -1,433 +0,0 @@ - - - - - diffpy.srrietveld.pattern.ExcludedRegion - - - - - - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module pattern :: - Class ExcludedRegion - - - - - -
        [frames] | no frames]
        -
        - -

        Class ExcludedRegion

        source code

        -
        -                       object --+        
-                                |        
-refinementdata.hdf5.object.Object --+    
-                                    |    
-   refinementdata.refinable.Refinable --+
-                                        |
-                                       ExcludedRegion
-
        - -
        -

        This is a script interface of the excluded region, with access - functions to the begin and end parameters in the object

        - - - - - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - owner, - name=None, - handle=None, - formula=None, - variables=None, - shape=None)
        - Initialization.        		 - source code - -
        - -
        -   - - - - - - -
        getBegin(self)
        - Get the begin values of the excluded region        		 - source code - -
        - -
        -   - - - - - - -
        getEnd(self)
        - Get the end values of the excluded region        		 - source code - -
        - -
        -   - - - - - - -
        getEngineType(self)
        - Get the engine type for this refinement        		 - source code - -
        - -
        -

        Inherited from refinementdata.refinable.Refinable: - addHistory, - addHistoryByPath, - addSigma, - addSigmaByPath, - findRefinement, - getHistory, - getHistoryByPath, - getSigma, - getSigmaByPath, - listHistories, - listRefined, - loadLocalObjects, - removeHistory, - update -

        -

        Inherited from refinementdata.hdf5.object.Object: - addObject, - copy, - copyMeta, - delete, - exportFile, - get, - getAttr, - getByPath, - getFlatIndex, - getMetaData, - getMultiDimIndex, - getObject, - getPyObj, - hasAttr, - hasMeta, - importFile, - isDescendant, - list, - listAttrs, - listNames, - listObjects, - load, - loadLocalData, - loadObject, - move, - range, - readStr, - removeObject, - rename, - repeat, - replicate, - reshape, - save, - set, - setAttr, - setByPath, - setLabels, - setPyObj, - unset, - unsetAttr, - writeStr -

        -

        Inherited from object: - __delattr__, - __format__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__, - __sizeof__, - __str__, - __subclasshook__ -

        -
        - - - - - - - - - -
        - Properties
        -

        Inherited from refinementdata.hdf5.object.Object: - labels, - name, - ndim, - path -

        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - owner, - name=None, - handle=None, - formula=None, - variables=None, - shape=None) -
        (Constructor) -

        -         		source code  -
        - -

        Initialization.

        -
        -
        Parameters:
        -
          -
        • owner (a data project) - the owner, which is usually a refinement.
          • -
        • handle (a HDF5Handle object) - a HDF5Handle pointing to the underlying HDF5 node.
          • -
        • formula (string) - a string of the function definition in C style
          • -
        • variables (a space separated string) - a space separated string of all variables -

          A name is passed to the initialization method when creating a - node.

          -

          A handle is passed to the inialization method in two - cases:

          -
            -
          1. - when loading from a HDF5 file; -
            2. -
          2. - when creating a HDF5 file but the object is a hard link to a - preexisiting one. -
            3. -
          -

          In the case when both name and handle are given, name will be - simply ignored. In the case when neither name nor handle is - given, an exception will be raised.

          -

          Generally, in the scripting interface, users do not have to - call this constructor directly

          • -
        • name (string @param name the name of the pattern)
          • -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        getBegin(self) -

        -         		source code  -
        - -

        Get the begin values of the excluded region

        -
        -
        Returns:
        -
        begin values
        -
        -
        -
        - -
        - -
        - - -
        -

        getEnd(self) -

        -         		source code  -
        - -

        Get the end values of the excluded region

        -
        -
        Returns:
        -
        end values
        -
        -
        -
        - -
        - -
        - - -
        -

        getEngineType(self) -

        -         		source code  -
        - -

        Get the engine type for this refinement

        -
        -
        Returns:
        -
        the string of the engine type, for example - "gsas" or "fullprof"
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:57 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.pattern.Pattern-class.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.pattern.Pattern-class.html deleted file mode 100644 index bcfdb916..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.pattern.Pattern-class.html +++ /dev/null @@ -1,1466 +0,0 @@ - - - - - diffpy.srrietveld.pattern.Pattern - - - - - - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module pattern :: - Class Pattern - - - - - -
        [frames] | no frames]
        -
        - -

        Class Pattern

        source code

        -
        -                       object --+            
-                                |            
-refinementdata.hdf5.object.Object --+        
-                                    |        
-   refinementdata.refinable.Refinable --+    
-                                        |    
-           refinementdata.pattern.Pattern --+
-                                            |
-                                           Pattern
-
        - -
        -
        -
-Pattern inherits the Pattern class in diffpy.refinementdata. Its basic 
-data is the array of 2theta, time of flight, intensity, error. It may not 
-have a list of parameters. It may have a file object which stores the original 
-data. 
-
-data member:
-    
-    xobs: the observed data
-    yobs: the observed y data
-    ycal: the refined y data
-    refl: the reflection list
-    srcfiles: the source files, including data files and source files 
-
-
        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - owner, - name=None, - handle=None, - shape=None)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        getAbsoluteDataFile(self)
        - Get the absolute data file path        		 - source code - -
        - -
        -   - - - - - - -
        getBackgroundCoefficients(self)
        - Get the background coefficients in a two dimensional array        		 - source code - -
        - -
        -   - - - - - - -
        getBackgroundCoefficientsSigma(self)
        - Get the background coefficients standard deviations in a two - dimensional array        		 - source code - -
        - -
        -   - - - - - - -
        getBackgroundType(self)
        - Get the background type identification number.        		 - source code - -
        - -
        -   - - - - - - -
        getDataFile(self)
        - Get the path of the data file.        		 - source code - -
        - -
        -   - - - - - - -
        getEngineType(self)
        - Get the engine type for this refinement        		 - source code - -
        - -
        -   - - - - - - -
        getLambda(self)
        - Get the refined wavelength value.        		 - source code - -
        - -
        -   - - - - - - -
        getLambda1(self)
        - Get the first wavelength value        		 - source code - -
        - -
        -   - - - - - - -
        getLambda1Sigma(self)
        - Get the first wavelength standard deviation        		 - source code - -
        - -
        -   - - - - - - -
        getLambda2(self)
        - Get the second wavelength value        		 - source code - -
        - -
        -   - - - - - - -
        getLambda2Sigma(self)
        - Get the second wavelength standard deviation        		 - source code - -
        - -
        -   - - - - - - -
        getLambdaSigma(self)
        - Get the refined wavelength standard deviation.        		 - source code - -
        - -
        -   - - - - - - -
        getNumOfBackgroundCoefficients(self)
        - Get the number of background coefficients.        		 - source code - -
        - -
        -   - - - - - - -
        getPolar(self)
        - Get the polarization factors        		 - source code - -
        - -
        -   - - - - - - -
        getPolarType(self)
        - Get the polarization type id numbers.        		 - source code - -
        - -
        -   - - - - - - -
        getRatio(self)
        - Get the ratio value of the refinement list.        		 - source code - -
        - -
        -   - - - - - - -
        getRp(self)
        - Get the Rp value of the refinement list        		 - source code - -
        - -
        -   - - - - - - -
        getRwp(self)
        - Get the Rwp value of the refinement list        		 - source code - -
        - -
        -   - - - - - - -
        getScale(self)
        - Get the scale factor of the pattern        		 - source code - -
        - -
        -   - - - - - - -
        getScaleSigma(self)
        - Get the scale factor standard deviation        		 - source code - -
        - -
        -   - - - - - - -
        getStep(self)
        - Get the step values        		 - source code - -
        - -
        -   - - - - - - -
        getTmax(self)
        - Get the Tmax of the pattern        		 - source code - -
        - -
        -   - - - - - - -
        getTmin(self)
        - Get the Tmin of the pattern        		 - source code - -
        - -
        -   - - - - - - -
        getUseFlag(self)
        - Get the use flag of this pattern.        		 - source code - -
        - -
        -   - - - - - - -
        getXobs(self)
        - Get the observed x axis points.        		 - source code - -
        - -
        -   - - - - - - -
        getYcal(self)
        - Get the calculated y values.        		 - source code - -
        - -
        -   - - - - - - -
        getYobs(self)
        - Get the observed y values.        		 - source code - -
        - -
        -   - - - - - - -
        getZero(self)
        - Get the zero shift value for this pattern        		 - source code - -
        - -
        -   - - - - - - -
        getZeroSigma(self)
        - Get the zero shift standard deviation        		 - source code - -
        - -
        -   - - - - - - -
        listExcludedRegions(self)
        - Get the excluded regions as list        		 - source code - -
        - -
        -

        Inherited from refinementdata.pattern.Pattern: - get, - loadLocalData, - set -

        -

        Inherited from refinementdata.refinable.Refinable: - addHistory, - addHistoryByPath, - addSigma, - addSigmaByPath, - findRefinement, - getHistory, - getHistoryByPath, - getSigma, - getSigmaByPath, - listHistories, - listRefined, - loadLocalObjects, - removeHistory, - update -

        -

        Inherited from refinementdata.hdf5.object.Object: - addObject, - copy, - copyMeta, - delete, - exportFile, - getAttr, - getByPath, - getFlatIndex, - getMetaData, - getMultiDimIndex, - getObject, - getPyObj, - hasAttr, - hasMeta, - importFile, - isDescendant, - list, - listAttrs, - listNames, - listObjects, - load, - loadObject, - move, - range, - readStr, - removeObject, - rename, - repeat, - replicate, - reshape, - save, - setAttr, - setByPath, - setLabels, - setPyObj, - unset, - unsetAttr, - writeStr -

        -

        Inherited from object: - __delattr__, - __format__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__, - __sizeof__, - __str__, - __subclasshook__ -

        -
        - - - - - - - - - -
        - Properties
        -

        Inherited from refinementdata.hdf5.object.Object: - labels, - name, - ndim, - path -

        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - owner, - name=None, - handle=None, - shape=None) -
        (Constructor) -

        -         		source code  -
        - -

        Initialization

        -
        -
        Parameters:
        -
          -
        • owner (a data project) - the owner, which is usually a refinement.
          • -
        • handle (a HDF5Handle object) - a HDF5Handle pointing to the underlying HDF5 node. -

          A name is passed to the initialization method when creating a - node.

          -

          A handle is passed to the inialization method in two - cases:

          -
            -
          1. - when loading from a HDF5 file; -
            2. -
          2. - when creating a HDF5 file but the object is a hard link to a - preexisiting one. -
            3. -
          -

          In the case when both name and handle are given, name will be - simply ignored. In the case when neither name nor handle is - given, an exception will be raised.

          -

          Usually in the scripting interface, users do not have to worry - about the initialization

          • -
        • name (string @param name the name of the pattern)
          • -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        getAbsoluteDataFile(self) -

        -         		source code  -
        - -

        Get the absolute data file path

        -
        -
        Returns:
        -
        the absolute data path strings
        -
        -
        -
        - -
        - -
        - - -
        -

        getBackgroundCoefficients(self) -

        -         		source code  -
        - -

        Get the background coefficients in a two dimensional array

        -
        -
        Returns:
        -
        the background coefficient values in a two dimensional array
        -
        -
        -
        - -
        - -
        - - -
        -

        getBackgroundCoefficientsSigma(self) -

        -         		source code  -
        - -

        Get the background coefficients standard deviations in a two - dimensional array

        -
        -
        Returns:
        -
        the background coefficient standard deviations in a two - dimensional array
        -
        -
        -
        - -
        - -
        - - -
        -

        getBackgroundType(self) -

        -         		source code  -
        - -

        Get the background type identification number. This number has - different meanings in engines.

        -
        -
        Returns:
        -
        an integer represent the type of the background function
        -
        -
        -
        - -
        - -
        - - -
        -

        getDataFile(self) -

        -         		source code  -
        - -

        Get the path of the data file.

        -
        -
        Returns:
        -
        the data path strings
        -
        -
        -
        - -
        - -
        - - -
        -

        getEngineType(self) -

        -         		source code  -
        - -

        Get the engine type for this refinement

        -
        -
        Returns:
        -
        the string of the engine type, for example - "gsas" or "fullprof"
        -
        -
        -
        - -
        - -
        - - -
        -

        getLambda(self) -

        -         		source code  -
        - -

        Get the refined wavelength value. In FullProf, there can be only one - lambda value can be refined

        -
        -
        Returns:
        -
        the values of wavelength in angstroms
        -
        -
        -
        - -
        - -
        - - -
        -

        getLambda1(self) -

        -         		source code  -
        - -

        Get the first wavelength value

        -
        -
        Returns:
        -
        the values of the wavelength in angstroms
        -
        -
        -
        - -
        - -
        - - -
        -

        getLambda1Sigma(self) -

        -         		source code  -
        - -

        Get the first wavelength standard deviation

        -
        -
        Returns:
        -
        the wavelength standard deviation
        -
        -
        -
        - -
        - -
        - - -
        -

        getLambda2(self) -

        -         		source code  -
        - -

        Get the second wavelength value

        -
        -
        Returns:
        -
        the values of the wavelength in angstroms
        -
        -
        -
        - -
        - -
        - - -
        -

        getLambda2Sigma(self) -

        -         		source code  -
        - -

        Get the second wavelength standard deviation

        -
        -
        Returns:
        -
        the wavelength standard deviation
        -
        -
        -
        - -
        - -
        - - -
        -

        getLambdaSigma(self) -

        -         		source code  -
        - -

        Get the refined wavelength standard deviation. In FullProf, there can - be only one lambda value can be refined

        -
        -
        Returns:
        -
        the wavelength standard deviation
        -
        -
        -
        - -
        - -
        - - -
        -

        getNumOfBackgroundCoefficients(self) -

        -         		source code  -
        - -

        Get the number of background coefficients. This is number is from the - dimensions of the background coefficients array

        -
        -
        Returns:
        -
        the number of background coefficients
        -
        -
        -
        - -
        - -
        - - -
        -

        getPolar(self) -

        -         		source code  -
        - -

        Get the polarization factors

        -
        -
        Returns:
        -
        the polarization factors
        -
        -
        -
        - -
        - -
        - - -
        -

        getPolarType(self) -

        -         		source code  -
        - -

        Get the polarization type id numbers. These numbers have different - meanings in different engine files, please refer to the manual of the - refinement engine.

        -
        -
        Returns:
        -
        the Tmin of the pattern as float
        -
        -
        -
        - -
        - -
        - - -
        -

        getRatio(self) -

        -         		source code  -
        - -

        Get the ratio value of the refinement list. These values are read from - the engine files, and not calculated in SrRietveld.

        -
        -
        Returns:
        -
        the values of ratios of intensities of lambda2 / lambda1
        -
        -
        -
        - -
        - -
        - - -
        -

        getRp(self) -

        -         		source code  -
        - -

        Get the Rp value of the refinement list

        -
        -
        Returns:
        -
        the values of Rp
        -
        -
        -
        - -
        - -
        - - -
        -

        getRwp(self) -

        -         		source code  -
        - -

        Get the Rwp value of the refinement list

        -
        -
        Returns:
        -
        the values of Rwp
        -
        -
        -
        - -
        - -
        - - -
        -

        getScale(self) -

        -         		source code  -
        - -

        Get the scale factor of the pattern

        -
        -
        Returns:
        -
        the scale factor of the pattern as float
        -
        -
        -
        - -
        - -
        - - -
        -

        getScaleSigma(self) -

        -         		source code  -
        - -

        Get the scale factor standard deviation

        -
        -
        Returns:
        -
        the scale factor standard deviation
        -
        -
        -
        - -
        - -
        - - -
        -

        getStep(self) -

        -         		source code  -
        - -

        Get the step values

        -
        -
        Returns:
        -
        the step sizes
        -
        -
        -
        - -
        - -
        - - -
        -

        getTmax(self) -

        -         		source code  -
        - -

        Get the Tmax of the pattern

        -
        -
        Returns:
        -
        the Tmax of the pattern as float
        -
        -
        -
        - -
        - -
        - - -
        -

        getTmin(self) -

        -         		source code  -
        - -

        Get the Tmin of the pattern

        -
        -
        Returns:
        -
        the Tmin of the pattern as float
        -
        -
        -
        - -
        - -
        - - -
        -

        getUseFlag(self) -

        -         		source code  -
        - -

        Get the use flag of this pattern. In GSAS a histogram can be flagged - as used (True) or unused (False). The pattern will be included in the - refinement only if its used. The pattern will always be used in a - FullProf refinement.

        -
        -
        Returns:
        -
        the use flags (boolean) of this pattern in refinements
        -
        -
        -
        - -
        - -
        - - -
        -

        getXobs(self) -

        -         		source code  -
        - -

        Get the observed x axis points. This parameters is only available - after the refinement is complete.

        -
        -
        Returns:
        -
        a multi-dimensional array with the x axis points.
        -
        -
        -
        - -
        - -
        - - -
        -

        getYcal(self) -

        -         		source code  -
        - -

        Get the calculated y values. This parameters is only available after - the refinement is complete.

        -
        -
        Returns:
        -
        a multi-dimensional array with the calculated y values.
        -
        -
        -
        - -
        - -
        - - -
        -

        getYobs(self) -

        -         		source code  -
        - -

        Get the observed y values. This parameters is only available after the - refinement is complete.

        -
        -
        Returns:
        -
        a multi-dimensional array with the observed y values.
        -
        -
        -
        - -
        - -
        - - -
        -

        getZero(self) -

        -         		source code  -
        - -

        Get the zero shift value for this pattern

        -
        -
        Returns:
        -
        the zero shift value as float
        -
        -
        -
        - -
        - -
        - - -
        -

        getZeroSigma(self) -

        -         		source code  -
        - -

        Get the zero shift standard deviation

        -
        -
        Returns:
        -
        the zero shift standard deviation
        -
        -
        -
        -
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        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module phase - - - - - -
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        -
        - -

        Module phase

        source code

        -

        This package contains the Phase class in SrRietveld, which is an - script interface to access the structure information

        - - - - - - - - - - -
        - Classes
        -   - - Phase
        - A Phase object saves the structure to be refined. -
        - - - - - - - - - - - - - - - -
        - Variables
        -   - - PARAMNAMES = {'fullprof': {'Biso': 'AtomicDisplacementFactor.B... -
        -   - - __id__ = '$Id: phase.py 6726 2011-08-25 09:36:23Z yshang $' -
        -   - - __package__ = 'diffpy.srrietveld' -
        -

        Imports: - Structure, - UTILS -


        - - - - - - -
        - Variables Details
        - -
        - -
        -

        PARAMNAMES

        - -
        -
        -
        -
        Value:
        - 
        -{'fullprof': {'Biso': 'AtomicDisplacementFactor.Biso',
-              'Rp': 'Rp',
-              'Rwp': 'Rwp',
-              'Tmax': 'Thmin',
-              'Tmin': 'Thmax',
-              'Uiso': 'AtomicDisplacementFactor.Uiso',
-              'X': 'X',
-              'Y': 'Y',
-...
-
        -
        -
        -
        -
        -
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        diffpy.srrietveld
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        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.phase-pysrc.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.phase-pysrc.html deleted file mode 100644 index c7463ccf..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.phase-pysrc.html +++ /dev/null @@ -1,549 +0,0 @@ - - - - - diffpy.srrietveld.phase - - - - - - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module phase - - - - - -
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        -
        -

        Source Code for Module diffpy.srrietveld.phase

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2009 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Yingrui Shang 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14  """ 
- 15  This package contains the Phase class in SrRietveld, which is an script interface 
- 16  to access the structure information 
- 17  """ 
- 18   
- 19  __id__ = "$Id: phase.py 6726 2011-08-25 09:36:23Z yshang $" 
- 20   
- 21  from diffpy.refinementdata.structure import Structure 
- 22  from diffpy.srrietveld.paramnames import PARAMNAMES 
- 23  import diffpy.srrietveld.utility as UTILS  
- 24   
-
         25 -class Phase(Structure): 
-
         26      """A Phase object saves the structure to be refined. It contains the  
- 27      a list of variables to represent a structure. such as a, b, c, alpha, beta,  
- 28      gamma and so on.  
- 29       
- 30      data member: 
- 31          spacegroup: space group of the structure 
- 32          a,b,c:  the lattice constant 
- 33          alpha,beta,gamma: the lattice angle 
- 34       
- 35      This class is also an interface for the Structure class in  
- 36      diffpy.refinementdata.structure package, to provide convenient access functions 
- 37      to the structure data  
- 38      """ 
-
         39 -    def __init__(self, owner, name=None, handle=None, shape=None): 
-
         40          """ 
- 41          Constructor. The construction of a Phase object is taken care of by the 
- 42          Project. Users do not have to call this function directly.  
- 43           
- 44          @type owner:    a data object 
- 45          @param owner:    the owner, which is usually a Refinement object. 
- 46          @type name:    string 
- 47          @param name:    the node name. 
- 48          @type handle:    a HDF5Handle object 
- 49          @param handle:    a HDF5Handle pointing to the underlying HDF5 node.  
- 50          @type shape:    tuple 
- 51          @param shape:    the shape of the data object. Each element denotes  
- 52                          the number of elements in each dimension 
- 53           
- 54          A name is passed to the initialization method when creating a node. 
- 55           
- 56          A handle is passed to the inialization method in two cases: 
- 57              1.  when loading from a HDF5 file; 
- 58              2.  when creating a HDF5 file but the object is a hard link to  
- 59                  a preexisiting one. 
- 60                   
- 61          In the case when both name and handle are given, name will be simply ignored. 
- 62          In the case when neither name nor handle is given, an exception will be raised. 
- 63          """ 
- 64          Structure.__init__(self, owner, name, handle, shape) 
- 65          return 
-
         66       
-
         67 -    def getAtomByName(self, name): 
-
         68          ''' 
- 69          Get the atom by its name 
- 70           
- 71          @type name: string 
- 72          @param name: the atom name 
- 73           
- 74          @return: the atom object with the name if exists. None if no such  
- 75                  phase object. The program will emit a warning if duplicate  
- 76                  atom names exist, and the first atom obj with the same name 
- 77                  will be returned 
- 78          ''' 
- 79   
- 80          rv = [None] 
- 81          rv = [obj for obj in self.listAtoms() if obj.name == name] 
- 82          if len(rv) > 1: 
- 83              __msg = 'Duplicate phase names, the first refinement is returned' 
- 84              UTILS.printWarning(__msg) 
- 85               
- 86          return rv[0] 
-
         87           
-
         88 -    def getSpaceGroup(self): 
-
         89          """ 
- 90          Get the space group of the phase 
- 91           
- 92          @return:    return the space group string list 
- 93          """ 
- 94          return self.getByPath(PARAMNAMES[self.getEngineType()]["space_group"]) 
-
         95       
-
         96 -    def getLatticeA(self): 
-
         97          """ 
- 98          Get the lattice parameter a in angstroms 
- 99           
-100          @return:        the lattice a values 
-101          """ 
-102          return self.getByPath(PARAMNAMES[self.getEngineType()]["a"]) 
-
        103       
-
        104 -    def getLatticeASigma(self): 
-
        105          """ 
-106          Get the standard deviation of lattice parameter a in angstroms 
-107           
-108          @return:        the lattice a values 
-109          """ 
-110          return self.getSigmaByPath(PARAMNAMES[self.getEngineType()]["a"]) 
-
        111       
-112       
-
        113 -    def getLatticeB(self): 
-
        114          """ 
-115          Get the lattice parameter b in anstrom 
-116           
-117          @return:     the lattice b values 
-118          """ 
-119          return self.getByPath(PARAMNAMES[self.getEngineType()][ "b"]) 
-
        120       
-
        121 -    def getLatticeBSigma(self): 
-
        122          """ 
-123          Get the standard deviation of lattice parameter b in anstrom 
-124           
-125          @return:     the lattice b standard deviations 
-126          """ 
-127          return self.getSigmaByPath(PARAMNAMES[self.getEngineType()][ "b"]) 
-
        128       
-
        129 -    def getLatticeC(self): 
-
        130          """ 
-131          Get the lattice parameter c in anstrom 
-132           
-133          @return:   the lattice c values 
-134          """ 
-135          return self.getByPath(PARAMNAMES[self.getEngineType()]["c"]) 
-
        136       
-
        137 -    def getLatticeCSigma(self): 
-
        138          """ 
-139          Get the standard deviation of lattice parameter c in anstrom 
-140           
-141          @return:   the lattice c standard deviations 
-142          """ 
-143          return self.getSigmaByPath(PARAMNAMES[self.getEngineType()]["c"]) 
-
        144       
-145       
-
        146 -    def getAlpha(self): 
-
        147          """ 
-148          Get the alpha value in degree 
-149           
-150          @return:    if index is None, return the alpha value list in a Dataset 
-151                      if index is a number or tuple, return the a value as a float 
-152          """ 
-153          return self.getByPath(PARAMNAMES[self.getEngineType()]["alpha"]) 
-
        154   
-
        155 -    def getAlphaSigma(self): 
-
        156          """ 
-157          Get the alpha value in degree 
-158           
-159          @return:    if index is None, return the alpha value list in a Dataset 
-160                      if index is a number or tuple, return the a value as a float 
-161          """ 
-162          return self.getSigmaByPath(PARAMNAMES[self.getEngineType()]["alpha"]) 
-
        163   
-164   
-
        165 -    def getBeta(self): 
-
        166          """ 
-167          Get the beta value in degree 
-168           
-169          @return:    if index is None, return the beta value list in a Dataset 
-170                      if index is a number or tuple, return the a value as a float 
-171          """ 
-172          return self.getByPath(PARAMNAMES[self.getEngineType()]["beta"]) 
-
        173   
-
        174 -    def getBetaSigma(self): 
-
        175          """ 
-176          Get the standard deviation beta value in degree 
-177           
-178          @return:   the beta standard deviations 
-179          """ 
-180          return self.getSigmaByPath(PARAMNAMES[self.getEngineType()]["beta"]) 
-
        181       
-
        182 -    def getEngineType(self): 
-
        183          '''Get the engine type for this refinement 
-184           
-185          @return:    the string of the engine type, for example I{"gsas"} or I{"fullprof"}''' 
-186           
-187          return self.owner.owner.getEngineType() 
-
        188   
-
        189 -    def getGamma(self): 
-
        190          """ 
-191          Get the gamma value in degree 
-192           
-193          @return:  return the gamma values 
-194          """ 
-195          return self.getByPath(PARAMNAMES[self.getEngineType()]["gamma"]) 
-
        196   
-
        197 -    def getGammaSigma(self): 
-
        198          """ 
-199          Get the standard deviation gamma value in degree 
-200           
-201          @return:  return the gamma standard deviations 
-202          """ 
-203          return self.getSigmaByPath(PARAMNAMES[self.getEngineType()]["gamma"]) 
-
        204       
-
        205 -    def getName(self): 
-
        206          ''' 
-207          Get the phase name 
-208           
-209          @return: string 
-210          ''' 
-211          return self.get('Name').first() 
-
        212       
-
        213 -    def getNumOfAtoms(self): 
-
        214          """ 
-215          Get number of atoms in the phase 
-216           
-217          @return: number of atoms 
-218          """ 
-219          return len(self.listAtoms()) 
-
        220       
-
        221 -    def listAtoms(self): 
-
        222          """ 
-223          List the atoms  
-224           
-225          @return: a list of Atom objects 
-226          """ 
-227          return [obj for obj in self.listObjects(recursively = True) if obj.name.startswith('Atom[')] 
-
        228       
-
        229 -    def listAtomNames(self): 
-
        230          ''' 
-231          List the atom names 
-232           
-233          @return: a list of atom names in this phase 
-234          ''' 
-235          return[atom.getName() for atom in self.listAtoms()] 
-
        236   
-
        -
        - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
        - - - - - -
        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:58 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.phase.Phase-class.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.phase.Phase-class.html deleted file mode 100644 index 3437168f..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.phase.Phase-class.html +++ /dev/null @@ -1,1066 +0,0 @@ - - - - - diffpy.srrietveld.phase.Phase - - - - - - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module phase :: - Class Phase - - - - - -
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        -
        - -

        Class Phase

        source code

        -
        -                       object --+            
-                                |            
-refinementdata.hdf5.object.Object --+        
-                                    |        
-   refinementdata.refinable.Refinable --+    
-                                        |    
-       refinementdata.structure.Structure --+
-                                            |
-                                           Phase
-
        - -
        -
        -A Phase object saves the structure to be refined. It contains the 
-a list of variables to represent a structure. such as a, b, c, alpha, beta, 
-gamma and so on. 
-
-data member:
-    spacegroup: space group of the structure
-    a,b,c:  the lattice constant
-    alpha,beta,gamma: the lattice angle
-
-This class is also an interface for the Structure class in 
-diffpy.refinementdata.structure package, to provide convenient access functions
-to the structure data 
-
-
        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - owner, - name=None, - handle=None, - shape=None)
        - Constructor.        		 - source code - -
        - -
        -   - - - - - - -
        getAlpha(self)
        - Get the alpha value in degree        		 - source code - -
        - -
        -   - - - - - - -
        getAlphaSigma(self)
        - Get the alpha value in degree        		 - source code - -
        - -
        -   - - - - - - -
        getAtomByName(self, - name)
        - Get the atom by its name        		 - source code - -
        - -
        -   - - - - - - -
        getBeta(self)
        - Get the beta value in degree        		 - source code - -
        - -
        -   - - - - - - -
        getBetaSigma(self)
        - Get the standard deviation beta value in degree        		 - source code - -
        - -
        -   - - - - - - -
        getEngineType(self)
        - Get the engine type for this refinement        		 - source code - -
        - -
        -   - - - - - - -
        getGamma(self)
        - Get the gamma value in degree        		 - source code - -
        - -
        -   - - - - - - -
        getGammaSigma(self)
        - Get the standard deviation gamma value in degree        		 - source code - -
        - -
        -   - - - - - - -
        getLatticeA(self)
        - Get the lattice parameter a in angstroms        		 - source code - -
        - -
        -   - - - - - - -
        getLatticeASigma(self)
        - Get the standard deviation of lattice parameter a in angstroms        		 - source code - -
        - -
        -   - - - - - - -
        getLatticeB(self)
        - Get the lattice parameter b in anstrom        		 - source code - -
        - -
        -   - - - - - - -
        getLatticeBSigma(self)
        - Get the standard deviation of lattice parameter b in anstrom        		 - source code - -
        - -
        -   - - - - - - -
        getLatticeC(self)
        - Get the lattice parameter c in anstrom        		 - source code - -
        - -
        -   - - - - - - -
        getLatticeCSigma(self)
        - Get the standard deviation of lattice parameter c in anstrom        		 - source code - -
        - -
        -   - - - - - - -
        getName(self)
        - Get the phase name        		 - source code - -
        - -
        -   - - - - - - -
        getNumOfAtoms(self)
        - Get number of atoms in the phase        		 - source code - -
        - -
        -   - - - - - - -
        getSpaceGroup(self)
        - Get the space group of the phase        		 - source code - -
        - -
        -   - - - - - - -
        listAtomNames(self)
        - List the atom names        		 - source code - -
        - -
        -   - - - - - - -
        listAtoms(self)
        - List the atoms        		 - source code - -
        - -
        -

        Inherited from refinementdata.structure.Structure: - readSource, - writeSource -

        -

        Inherited from refinementdata.refinable.Refinable: - addHistory, - addHistoryByPath, - addSigma, - addSigmaByPath, - findRefinement, - getHistory, - getHistoryByPath, - getSigma, - getSigmaByPath, - listHistories, - listRefined, - loadLocalObjects, - removeHistory, - update -

        -

        Inherited from refinementdata.hdf5.object.Object: - addObject, - copy, - copyMeta, - delete, - exportFile, - get, - getAttr, - getByPath, - getFlatIndex, - getMetaData, - getMultiDimIndex, - getObject, - getPyObj, - hasAttr, - hasMeta, - importFile, - isDescendant, - list, - listAttrs, - listNames, - listObjects, - load, - loadLocalData, - loadObject, - move, - range, - readStr, - removeObject, - rename, - repeat, - replicate, - reshape, - save, - set, - setAttr, - setByPath, - setLabels, - setPyObj, - unset, - unsetAttr, - writeStr -

        -

        Inherited from object: - __delattr__, - __format__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__, - __sizeof__, - __str__, - __subclasshook__ -

        -
        - - - - - - - - - -
        - Properties
        -

        Inherited from refinementdata.hdf5.object.Object: - labels, - name, - ndim, - path -

        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - owner, - name=None, - handle=None, - shape=None) -
        (Constructor) -

        -         		source code  -
        - - 
        -
-Constructor. The construction of a Phase object is taken care of by the
-Project. Users do not have to call this function directly. 
-
-@type owner:    a data object
-@param owner:    the owner, which is usually a Refinement object.
-@type name:    string
-@param name:    the node name.
-@type handle:    a HDF5Handle object
-@param handle:    a HDF5Handle pointing to the underlying HDF5 node. 
-@type shape:    tuple
-@param shape:    the shape of the data object. Each element denotes 
-                the number of elements in each dimension
-
-A name is passed to the initialization method when creating a node.
-
-A handle is passed to the inialization method in two cases:
-    1.  when loading from a HDF5 file;
-    2.  when creating a HDF5 file but the object is a hard link to 
-        a preexisiting one.
-        
-In the case when both name and handle are given, name will be simply ignored.
-In the case when neither name nor handle is given, an exception will be raised.
-
-
        -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        getAlpha(self) -

        -         		source code  -
        - -

        Get the alpha value in degree

        -
        -
        Returns:
        -
        if index is None, return the alpha value list in a Dataset if - index is a number or tuple, return the a value as a float
        -
        -
        -
        - -
        - -
        - - -
        -

        getAlphaSigma(self) -

        -         		source code  -
        - -

        Get the alpha value in degree

        -
        -
        Returns:
        -
        if index is None, return the alpha value list in a Dataset if - index is a number or tuple, return the a value as a float
        -
        -
        -
        - -
        - -
        - - -
        -

        getAtomByName(self, - name) -

        -         		source code  -
        - -

        Get the atom by its name

        -
        -
        Parameters:
        -
          -
        • name (string) - the atom name
          • -
        -
        Returns:
        -
        the atom object with the name if exists. None if no such phase - object. The program will emit a warning if duplicate atom names - exist, and the first atom obj with the same name will be returned
        -
        -
        -
        - -
        - -
        - - -
        -

        getBeta(self) -

        -         		source code  -
        - -

        Get the beta value in degree

        -
        -
        Returns:
        -
        if index is None, return the beta value list in a Dataset if - index is a number or tuple, return the a value as a float
        -
        -
        -
        - -
        - -
        - - -
        -

        getBetaSigma(self) -

        -         		source code  -
        - -

        Get the standard deviation beta value in degree

        -
        -
        Returns:
        -
        the beta standard deviations
        -
        -
        -
        - -
        - -
        - - -
        -

        getEngineType(self) -

        -         		source code  -
        - -

        Get the engine type for this refinement

        -
        -
        Returns:
        -
        the string of the engine type, for example - "gsas" or "fullprof"
        -
        -
        -
        - -
        - -
        - - -
        -

        getGamma(self) -

        -         		source code  -
        - -

        Get the gamma value in degree

        -
        -
        Returns:
        -
        return the gamma values
        -
        -
        -
        - -
        - -
        - - -
        -

        getGammaSigma(self) -

        -         		source code  -
        - -

        Get the standard deviation gamma value in degree

        -
        -
        Returns:
        -
        return the gamma standard deviations
        -
        -
        -
        - -
        - -
        - - -
        -

        getLatticeA(self) -

        -         		source code  -
        - -

        Get the lattice parameter a in angstroms

        -
        -
        Returns:
        -
        the lattice a values
        -
        -
        -
        - -
        - -
        - - -
        -

        getLatticeASigma(self) -

        -         		source code  -
        - -

        Get the standard deviation of lattice parameter a in angstroms

        -
        -
        Returns:
        -
        the lattice a values
        -
        -
        -
        - -
        - -
        - - -
        -

        getLatticeB(self) -

        -         		source code  -
        - -

        Get the lattice parameter b in anstrom

        -
        -
        Returns:
        -
        the lattice b values
        -
        -
        -
        - -
        - -
        - - -
        -

        getLatticeBSigma(self) -

        -         		source code  -
        - -

        Get the standard deviation of lattice parameter b in anstrom

        -
        -
        Returns:
        -
        the lattice b standard deviations
        -
        -
        -
        - -
        - -
        - - -
        -

        getLatticeC(self) -

        -         		source code  -
        - -

        Get the lattice parameter c in anstrom

        -
        -
        Returns:
        -
        the lattice c values
        -
        -
        -
        - -
        - -
        - - -
        -

        getLatticeCSigma(self) -

        -         		source code  -
        - -

        Get the standard deviation of lattice parameter c in anstrom

        -
        -
        Returns:
        -
        the lattice c standard deviations
        -
        -
        -
        - -
        - -
        - - -
        -

        getName(self) -

        -         		source code  -
        - -

        Get the phase name

        -
        -
        Returns:
        -
        string
        -
        -
        -
        - -
        - -
        - - -
        -

        getNumOfAtoms(self) -

        -         		source code  -
        - -

        Get number of atoms in the phase

        -
        -
        Returns:
        -
        number of atoms
        -
        -
        -
        - -
        - -
        - - -
        -

        getSpaceGroup(self) -

        -         		source code  -
        - -

        Get the space group of the phase

        -
        -
        Returns:
        -
        return the space group string list
        -
        -
        -
        - -
        - -
        - - -
        -

        listAtomNames(self) -

        -         		source code  -
        - -

        List the atom names

        -
        -
        Returns:
        -
        a list of atom names in this phase
        -
        -
        -
        - -
        - -
        - - -
        -

        listAtoms(self) -

        -         		source code  -
        - -

        List the atoms

        -
        -
        Returns:
        -
        a list of Atom objects
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - -
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           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module profile - - - - - -
        [frames] | no frames]
        -
        - -

        Module profile

        source code

        -

        This package contains the Pattern class in SrRietveld, which is an - script interface to access the structure information

        - - - - - - - - - - -
        - Classes
        -   - - Profile
        - Profile is a Function component which contains multiple parameters. -
        - - - - - - - - - - - - - - - -
        - Variables
        -   - - PARAMNAMES = {'fullprof': {'Biso': 'AtomicDisplacementFactor.B... -
        -   - - __id__ = '$Id: profile.py 6728 2011-08-26 21:54:11Z yshang $' -
        -   - - __package__ = 'diffpy.srrietveld' -
        -

        Imports: - Function -


        - - - - - - -
        - Variables Details
        - -
        - -
        -

        PARAMNAMES

        - -
        -
        -
        -
        Value:
        - 
        -{'fullprof': {'Biso': 'AtomicDisplacementFactor.Biso',
-              'Rp': 'Rp',
-              'Rwp': 'Rwp',
-              'Tmax': 'Thmin',
-              'Tmin': 'Thmax',
-              'Uiso': 'AtomicDisplacementFactor.Uiso',
-              'X': 'X',
-              'Y': 'Y',
-...
-
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        -
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           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
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        -
        -

        Source Code for Module diffpy.srrietveld.profile

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2009 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Yingrui Shang 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14  """ 
- 15  This package contains the Pattern class in SrRietveld, which is an script interface 
- 16  to access the structure information 
- 17  """ 
- 18   
- 19  __id__ = "$Id: profile.py 6728 2011-08-26 21:54:11Z yshang $" 
- 20   
- 21  from diffpy.refinementdata.function import Function 
- 22  from diffpy.srrietveld.paramnames import PARAMNAMES 
- 23   
-
         24 -class Profile(Function): 
-
         25      """Profile is a Function component which contains multiple parameters. 
- 26      A composite function may also contain other functions. 
- 27       
- 28      data member: 
- 29           
- 30          formula: a string of the function definition in C style 
- 31          variables: a space separated string of all variables in the formula 
- 32      """ 
-
         33 -    def __init__(self, owner, name=None, handle=None, formula=None, variables=None, shape=None): 
-
         34          """Initialization. 
- 35           
- 36          @type owner:    a data project 
- 37          @param owner:    the owner, which is usually a refinement. 
- 38          @type name:    string 
- 39          @param name     the name of the pattern 
- 40          @type handle:    a HDF5Handle object 
- 41          @param handle: a HDF5Handle pointing to the underlying HDF5 node.   
- 42          @type formula:    string 
- 43          @param formula:    a string of the function definition in C style 
- 44          @type variables:    a space separated string 
- 45          @param variables:    a space separated string of all variables  
- 46   
- 47          A name is passed to the initialization method when creating a node. 
- 48           
- 49          A handle is passed to the inialization method in two cases: 
- 50              1.  when loading from a HDF5 file; 
- 51              2.  when creating a HDF5 file but the object is a hard link to  
- 52                  a preexisiting one. 
- 53                   
- 54          In the case when both name and handle are given, name will be simply ignored. 
- 55          In the case when neither name nor handle is given, an exception will be raised. 
- 56           
- 57          Generally, in the scripting interface, users do not have to call this  
- 58          constructor directly 
- 59          """ 
- 60          Function.__init__(self, owner, name, handle, shape) 
- 61          return 
-
         62       
- 63       
-
         64 -    def getCutOff(self): 
-
         65          ''' 
- 66          Get the peak cut off factors from GSAS and the cut-off of the peak profile 
- 67          tails for FullProf (Wdt) 
- 68           
- 69          @return: cut off related values  
- 70          ''' 
- 71           
- 72          return self.getByPath(PARAMNAMES[self.getEngineType()]["cut_off"]) 
-
         73       
-
         74 -    def getEngineType(self): 
-
         75          '''Get the engine type for this refinement 
- 76           
- 77          @return:    the string of the engine type, for example I{"gsas"} or I{"fullprof"}''' 
- 78           
- 79          return self.owner.owner.owner.getEngineType() 
-
         80       
-
         81 -    def listCoefficientNames(self): 
-
         82          ''' 
- 83          List the names of the profile function coefficients 
- 84           
- 85          @return: a list of coefficient names 
- 86          ''' 
- 87          coefficients = self.getByPath(PARAMNAMES[self.getEngineType()]["profile_parameters"]).first() 
- 88          return coefficients.split() 
-
         89           
-
         90 -    def getNumOfCoefficients(self): 
-
         91          ''' 
- 92          Get number of profile coefficients 
- 93           
- 94          @return: number of profile coefficients 
- 95          ''' 
- 96          coefficients = self.getByPath(PARAMNAMES[self.getEngineType()]["profile_parameters"]).first() 
- 97          return len(coefficients.split()) 
-
         98       
-
         99 -    def getProfileType(self): 
-
        100          ''' 
-101          Get the profile type number. This number is different in engines. User  
-102          has to refer to the manual of the engine program for meanings of this  
-103          id number. Since the profile type should be the same for all the single 
-104          refinements in the series. So only a single number is returned. 
-105           
-106          @return: the profile function identification number 
-107          ''' 
-108          return self.getByPath(PARAMNAMES[self.getEngineType()]["profile_type"]).first() 
-
        109   
-
        -
        - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
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        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.profile.Profile-class.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.profile.Profile-class.html deleted file mode 100644 index 026db3f0..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.profile.Profile-class.html +++ /dev/null @@ -1,524 +0,0 @@ - - - - - diffpy.srrietveld.profile.Profile - - - - - - - - - - - - - - - - - - - - - -
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        -
        - -

        Class Profile

        source code

        -
        -                       object --+            
-                                |            
-refinementdata.hdf5.object.Object --+        
-                                    |        
-   refinementdata.refinable.Refinable --+    
-                                        |    
-         refinementdata.function.Function --+
-                                            |
-                                           Profile
-
        - -
        -
        -Profile is a Function component which contains multiple parameters.
-A composite function may also contain other functions.
-
-data member:
-    
-    formula: a string of the function definition in C style
-    variables: a space separated string of all variables in the formula
-
-
        - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - owner, - name=None, - handle=None, - formula=None, - variables=None, - shape=None)
        - Initialization.        		 - source code - -
        - -
        -   - - - - - - -
        getCutOff(self)
        - Get the peak cut off factors from GSAS and the cut-off of the peak - profile tails for FullProf (Wdt)        		 - source code - -
        - -
        -   - - - - - - -
        getEngineType(self)
        - Get the engine type for this refinement        		 - source code - -
        - -
        -   - - - - - - -
        getNumOfCoefficients(self)
        - Get number of profile coefficients        		 - source code - -
        - -
        -   - - - - - - -
        getProfileType(self)
        - Get the profile type number.        		 - source code - -
        - -
        -   - - - - - - -
        listCoefficientNames(self)
        - List the names of the profile function coefficients        		 - source code - -
        - -
        -

        Inherited from refinementdata.refinable.Refinable: - addHistory, - addHistoryByPath, - addSigma, - addSigmaByPath, - findRefinement, - getHistory, - getHistoryByPath, - getSigma, - getSigmaByPath, - listHistories, - listRefined, - loadLocalObjects, - removeHistory, - update -

        -

        Inherited from refinementdata.hdf5.object.Object: - addObject, - copy, - copyMeta, - delete, - exportFile, - get, - getAttr, - getByPath, - getFlatIndex, - getMetaData, - getMultiDimIndex, - getObject, - getPyObj, - hasAttr, - hasMeta, - importFile, - isDescendant, - list, - listAttrs, - listNames, - listObjects, - load, - loadLocalData, - loadObject, - move, - range, - readStr, - removeObject, - rename, - repeat, - replicate, - reshape, - save, - set, - setAttr, - setByPath, - setLabels, - setPyObj, - unset, - unsetAttr, - writeStr -

        -

        Inherited from object: - __delattr__, - __format__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__, - __sizeof__, - __str__, - __subclasshook__ -

        -
        - - - - - - - - - -
        - Properties
        -

        Inherited from refinementdata.hdf5.object.Object: - labels, - name, - ndim, - path -

        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - owner, - name=None, - handle=None, - formula=None, - variables=None, - shape=None) -
        (Constructor) -

        -         		source code  -
        - -

        Initialization.

        -
        -
        Parameters:
        -
          -
        • owner (a data project) - the owner, which is usually a refinement.
          • -
        • handle (a HDF5Handle object) - a HDF5Handle pointing to the underlying HDF5 node.
          • -
        • formula (string) - a string of the function definition in C style
          • -
        • variables (a space separated string) - a space separated string of all variables -

          A name is passed to the initialization method when creating a - node.

          -

          A handle is passed to the inialization method in two - cases:

          -
            -
          1. - when loading from a HDF5 file; -
            2. -
          2. - when creating a HDF5 file but the object is a hard link to a - preexisiting one. -
            3. -
          -

          In the case when both name and handle are given, name will be - simply ignored. In the case when neither name nor handle is - given, an exception will be raised.

          -

          Generally, in the scripting interface, users do not have to - call this constructor directly

          • -
        • name (string @param name the name of the pattern)
          • -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        getCutOff(self) -

        -         		source code  -
        - -

        Get the peak cut off factors from GSAS and the cut-off of the peak - profile tails for FullProf (Wdt)

        -
        -
        Returns:
        -
        cut off related values
        -
        -
        -
        - -
        - -
        - - -
        -

        getEngineType(self) -

        -         		source code  -
        - -

        Get the engine type for this refinement

        -
        -
        Returns:
        -
        the string of the engine type, for example - "gsas" or "fullprof"
        -
        -
        -
        - -
        - -
        - - -
        -

        getNumOfCoefficients(self) -

        -         		source code  -
        - -

        Get number of profile coefficients

        -
        -
        Returns:
        -
        number of profile coefficients
        -
        -
        -
        - -
        - -
        - - -
        -

        getProfileType(self) -

        -         		source code  -
        - -

        Get the profile type number. This number is different in engines. User - has to refer to the manual of the engine program for meanings of this id - number. Since the profile type should be the same for all the single - refinements in the series. So only a single number is returned.

        -
        -
        Returns:
        -
        the profile function identification number
        -
        -
        -
        - -
        - -
        - - -
        -

        listCoefficientNames(self) -

        -         		source code  -
        - -

        List the names of the profile function coefficients

        -
        -
        Returns:
        -
        a list of coefficient names
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
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        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:57 2011 - - http://epydoc.sourceforge.net -
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        Module project

        source code

        -

        This module contains the definition of the Project class. A SrRietveld - Project object can be initiated from saved refinement project file, and - the methods in this module can be used to access and manipulate the data - file.

        - - - - - - - - - - -
        - Classes
        -   - - Project
        - Project class defines a SrRietveld refinement project. -
        - - - - - - - - - - - - - - - -
        - Functions
        -   - - - - - - -
        copyObjectData(srcobj, - destobj, - srcindexlist, - destindexlist)
        - Copy data to another object.        		 - source code - -
        - -
        -   - - - - - - -
        exportEngineObject(engineobjowner, - key, - myobj, - index=None)
        - Export a saved HDF5Object to an engine object.        		 - source code - -
        - -
        -   - - - - - - -
        importEngineObject(myobjowner, - engineobj, - id, - index=None)
        - Import an engine object into myobject        		 - source code - -
        - -
        - - - - - - - - - - - - -
        - Variables
        -   - - __id__ = '$Id: project.py 6735 2011-08-27 20:05:44Z yshang $' -
        -   - - __package__ = 'diffpy.srrietveld' -
        -

        Imports: - Atom, - DataError, - ExcludedRegion, - GLOBALS, - Object, - ObjectInfo, - ObjectList, - Pattern, - Phase, - Profile, - ProjectData, - Refinable, - Refinement, - SrrFileError, - SrrIOError, - UTILS, - math, - os, - setObjectInfo, - shutil, - stat, - tempfile, - zipfile -


        - - - - - - -
        - Function Details
        - -
        - -
        - - -
        -

        copyObjectData(srcobj, - destobj, - srcindexlist, - destindexlist) -

        -         		source code  -
        - -

        Copy data to another object.

        -

        srcobj -- the source object destobj -- the target parent - object srcindexlist -- a list of indices to read data from srcobj - destindexlist -- a list of indices to write data to destobj

        -
        -
        -
        -
        - -
        - -
        - - -
        -

        exportEngineObject(engineobjowner, - key, - myobj, - index=None) -

        -         		source code  -
        - -

        Export a saved HDF5Object to an engine object.

        -
        -
        Parameters:
        -
          -
        • engineobjowner (a data object) - the owner of the engine object
          • -
        • myobj (a refinement object) - the source refinement object
          • -
        • index (interger or tuple) - the index to the single value if the object is multiplexed
          • -
        -
        Returns:
        -
        the newly created engine object
        -
        -
        -
        - -
        - -
        - - -
        -

        importEngineObject(myobjowner, - engineobj, - id, - index=None) -

        -         		source code  -
        - -

        Import an engine object into myobject

        -
        -
        Parameters:
        -
          -
        • myobjowner (an data object) - the owner of the refinement object to be created
          • -
        • engineobj (an engine fit object) - the engine object to be imported
          • -
        • id (integer or string) - the name/index of the refinement object to be created/obtained in - myobjowner
          • -
        • index (index or tuple) - when modify an object, indicate the index to the value to be - modified -

          return: the newly created local object

          • -
        -
        -
        -
        -
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        -

        Source Code for Module diffpy.srrietveld.project

        -
        -   1  ############################################################################## 
-   2  # 
-   3  # diffpy.srrietveld by DANSE Diffraction group 
-   4  #                   Simon J. L. Billinge 
-   5  #                   (c) 2009 Trustees of the Columbia University 
-   6  #                   in the City of New York.  All rights reserved. 
-   7  # 
-   8  # File coded by:    Jiwu Liu, Yingrui Shang 
-   9  # 
-  10  # See AUTHORS.txt for a list of people who contributed. 
-  11  # See LICENSE.txt for license information. 
-  12  # 
-  13  ############################################################################## 
-  14   
-  15  """This module contains the definition of the Project class. A SrRietveld Project 
-  16  object can be initiated from saved refinement project file, and the methods in  
-  17  this module can be used to access and manipulate the data file.""" 
-  18   
-  19  __id__ = "$Id: project.py 6735 2011-08-27 20:05:44Z yshang $" 
-  20   
-  21   
-  22  # Storage/Data 
-  23  from diffpy.refinementdata.project import Project as ProjectData 
-  24  from diffpy.srrietveld.refinement import Refinement 
-  25  from diffpy.srrietveld.pattern import Pattern, ExcludedRegion 
-  26  from diffpy.srrietveld.atom import Atom 
-  27  from diffpy.refinementdata.dataerrors import DataError 
-  28  from diffpy.srrietveld.phase import Phase 
-  29  from diffpy.srrietveld.profile import Profile 
-  30  from diffpy.refinementdata.refinable import Refinable 
-  31  from diffpy.refinementdata.hdf5.objectlist import ObjectList 
-  32  from diffpy.refinementdata.hdf5.object import Object 
-  33  import diffpy.srrietveld.gui.srrguiglobals as GLOBALS 
-  34  from diffpy.srrietveld.exceptions import SrrFileError, SrrIOError 
-  35  import os, shutil, stat, zipfile, tempfile, math 
-  36  import diffpy.srrietveld.utility as UTILS 
-  37  from diffpy.srrietveld.objectinfo import ObjectInfo, setObjectInfo 
-  38   
-
          39 -class Project(ProjectData): 
-
          40      ''' 
-  41      Project class defines a SrRietveld refinement project. It consists of a  
-  42      number of single refinements. A project can call different Rietveld engines  
-  43      to run its refinements.  
-  44       
-  45      A project object contains the list of refinemenets, and list of jobs.  
-  46      ''' 
-
          47 -    def __init__ (self, path, mode='a', mainframe=None): 
-
          48          """ 
-  49          Create a SrRietveld project from saved project data file.   
-  50           
-  51          @type path:    file path string 
-  52          @param path:   the path of the project data file. If it does not exist,  
-  53                          an empty project will be created. 
-  54          @type mode:    one character string, possible value r, w, a 
-  55          @param mode:   the mode to open the project.  
-  56                           - r -- read, 
-  57                           - w -- write, 
-  58                           - a -- append 
-  59          @type mainframe:    the main frame object 
-  60          @param mainframe:    the pointer to the main window in the GUI object 
-  61                              set to be None in script mode 
-  62          """ 
-  63          ProjectData.__init__(self, path, mode) 
-  64   
-  65          self.mainframe = mainframe 
-  66          self.plots = [] 
-  67          self.jobs = [] 
-  68          for fit in self.objects: 
-  69              setObjectInfo(fit) 
-  70              fit.alive = 0 
-  71           
-  72          # save the path of the hdf5 data file location, used to determine the  
-  73          # relative paths of the raw files 
-  74          self.basepath = os.path.dirname(path) 
-  75          self.fullpath = path 
-  76           
-  77          self.updatePaths() 
-  78          # indication that if the project data need to be saved to the disk 
-  79          self.altered = True 
-  80           
-  81          return 
-
          82       
-
          83 -    def addJob(self, job): 
-
          84          """ 
-  85          Add a job to the job list of the project 
-  86           
-  87          @type job:    a Job object 
-  88          @param job:    a refinement job to be added 
-  89          @return:    no return value 
-  90          """ 
-  91          if job not in self.jobs: 
-  92              self.jobs.append(job) 
-  93       
-  94          return 
-
          95       
-
          96 -    def addToZip(self, zipFilePath): 
-
          97          """ 
-  98          Archive the project data file, and other associated files, such as the  
-  99          histogram files, instrument files, and incident spectrum files into a  
- 100          zip folder.  
- 101           
- 102          @type zipFilePath: zip file path string 
- 103          @param zipFilePath: the full path to save the zip file 
- 104          @return:    no return value 
- 105          """ 
- 106           
- 107          # the file can only be compressed (ZIP_DEFLATED) when the zlib is installed.  
- 108          # TODO: the allowZip64 should be true if the zip file is larger than 2gb 
- 109          #     do not see the needs so far 
- 110          try: 
- 111              import zlib 
- 112              zipflg = zipfile.ZIP_DEFLATED 
- 113          except ImportError: 
- 114              zipflg = zipfile.ZIP_STORED   
- 115           
- 116          zpf = zipfile.ZipFile(zipFilePath, 'w', zipflg) 
- 117           
- 118          # create a temp project file, change the file paths 
- 119          tmpf, tmpfp = tempfile.mkstemp() 
- 120           
- 121          self.__export(tmpfp) 
- 122           
- 123          tmpproj = Project(tmpfp) 
- 124          # change the mode of a new file 
- 125          os.chmod(tmpfp, stat.S_IRUSR|stat.S_IWUSR|stat.S_IRGRP|stat.S_IROTH) 
- 126          tmpproj.basepath = os.path.dirname(tmpfp) 
- 127          tmpproj.fullpath = tmpfp 
- 128          # update the relative paths 
- 129          tmpproj.__updateRelativePaths() 
- 130           
- 131          # get the files from teh pattern 
- 132          fitList = tmpproj.listRefinements() 
- 133          arcname = lambda pr, fp: os.path.join(pr, os.path.basename(fp)) 
- 134           
- 135          #store the arc names already saved 
- 136          savedArcNames = [] 
- 137           
- 138          for fitid, fit in enumerate(fitList): 
- 139              patterns = fit.getObject("Pattern") 
- 140              for bid, pt in enumerate(patterns): 
- 141                  for param in ["Datafile", "MFIL", "Instrumentfile"]: 
- 142                      arcdir = os.path.join(param.lower(), fit.name) 
- 143                       
- 144                      ds = pt.get(param) 
- 145                       
- 146                      if ds: 
- 147                          dname = ds.name 
- 148                          absds = pt.get(dname + '_abspath') 
- 149                          # loop over all datasets in the refinement list 
- 150                          for index in fit.range(): 
- 151                              filepath = fit.findFileFromDataset(ds, index) 
- 152                              if filepath: 
- 153                                  # only write the file when it's not saved before 
- 154                                  if arcname(arcdir, filepath) not in savedArcNames: 
- 155                                      zpf.write(filepath, arcname(arcdir, filepath)) 
- 156                                      savedArcNames.append(arcname(arcdir, filepath)) 
- 157                                       
- 158                              elif param == "Datafile": 
- 159                                  df = fit.getDataFileFromPattern(index, bid) 
- 160                                  if df: 
- 161                                      tmpDir = tempfile.mkdtemp() 
- 162                                      filepath = df.dump(tmpDir) 
- 163                                      if arcname(param, filepath) not in savedArcNames: 
- 164                                          zpf.write(filepath, arcname(param, filepath)) 
- 165                                          savedArcNames.append(arcname(param, filepath)) 
- 166                              else: 
- 167                                  __msg = "The file (%s) for index %s, bank id %s is not found.The project in zip file may not be able to run correctly. " % (param, str(fit.getFlatIndex(index)), str(bid)) 
- 168                                  UTILS.printWarning(__msg) 
- 169                               
- 170                              # change the file paths in the copied project  
- 171                              if filepath: 
- 172                                  ds[index] = arcname(arcdir, filepath) 
- 173                                  if absds: 
- 174                                      absds[index] = '' 
- 175          # save the change 
- 176          tmpproj.save() 
- 177          # the archived project file name is set to be same to the zip file name 
- 178          projectFileName = os.path.splitext(os.path.basename(zipFilePath))[0] + '.srr' 
- 179          zpf.write(tmpfp, projectFileName) 
- 180                                   
- 181          zpf.close() 
- 182           
- 183          return 
-
         184       
-
         185 -    def close(self): 
-
         186          """ 
- 187          Close the opened project. 
- 188          @return:    no return value 
- 189          """ 
- 190          # save the data 
- 191          for plot in self.plots: 
- 192              if plot.alive: 
- 193                  plot.close() 
- 194                   
- 195          ProjectData.close(self) 
- 196          return 
-
         197       
-
         198 -    def deleteJob(self, job): 
-
         199          """ 
- 200          Delete job from the job list 
- 201           
- 202          @type job:    a job object 
- 203          @param job:    the job to be deleted 
- 204          @return:    no return value 
- 205           
- 206          """ 
- 207          try: 
- 208              self.jobs.remove(job) 
- 209          except: 
- 210              if GLOBALS.isDebug: 
- 211                  UTILS.printDebugInfo() 
- 212              else: 
- 213                  UTILS.printWarning("No such job in the job list") 
- 214               
- 215          return     
-
         216   
-
         217 -    def exportEngineFit(self, refinementObj, index=None): 
-
         218          """Build an engine fit based on given fit and index. 
- 219           
- 220          @type refinementObj:     a diffpy.refinementdata.Refinement object or its derivatives 
- 221          @param refinementObj:    a refinement usually contains a series of single refinements 
- 222                              The information will be read from this object to construct 
- 223                              a engine fit, which contains information for a single  
- 224                              step refinement 
- 225          @type index:    tuple or int 
- 226          @param index:   the index of the single refinement in the refinementObj  
- 227                          a tuple represents the index in a multidimensinal data 
- 228                          if the refinementObj is one dimensional, index can be  
- 229                          an integer 
- 230          @return:    an engine fit object 
- 231          """ 
- 232          enginefit =  exportEngineObject(None, None, refinementObj, index) 
- 233           
- 234          if refinementObj.getEngineType() == 'gsas': 
- 235              engineFileStr = str(refinementObj.get('enginefile')[index]) 
- 236   
- 237               
- 238              enginefit.expfile.readString(engineFileStr) 
- 239               
- 240          # connect phase with pattern 
- 241          for i, contribution in enumerate(enginefit.get("Contribution")): 
- 242              mycontribution = refinementObj.getObject("Contribution").getObject(i) 
- 243              patternindex = mycontribution.getAttr('patternindex') 
- 244              phaseindex = mycontribution.getAttr('phaseindex') 
- 245              if patternindex is None: 
- 246                  patternindex = 0 
- 247              if phaseindex is None: 
- 248                  phaseindex =0 
- 249                   
- 250              # if a project is saved in a 64 bit system and loaded in a 32bit system 
- 251              # the int64 type has to converted to an ordinary integer 
- 252              patternindex = int(patternindex) 
- 253              phaseindex = int(phaseindex) 
- 254               
- 255              pattern = enginefit.get("Pattern", patternindex) 
- 256              phase = enginefit.get("Phase", phaseindex) 
- 257              contribution.setParentPattern(pattern) 
- 258              contribution.setParentPhase(phase) 
- 259           
- 260          return enginefit 
-
         261       
-
         262 -    def getRefinementByName(self, name): 
-
         263          ''' 
- 264          Get the refinement object by its name 
- 265           
- 266          @type name: string 
- 267          @param name: the refinement name to get 
- 268           
- 269          @return: the refinement object with the name, None if there is no such  
- 270                      refinement object. If there are duplicate names, the first 
- 271                      refinement object with this name will be returned, and the  
- 272                      program with emit a warning 
- 273          ''' 
- 274    
- 275          rv = [None] 
- 276          rv = [obj for obj in self.listRefinements() if obj.name == name] 
- 277          if len(rv) > 1: 
- 278              __msg = 'Duplicate refinement names, the first refinement is returned' 
- 279              UTILS.printWarning(__msg) 
- 280               
- 281          return rv[0] 
-
         282    
-
         283 -    def importDataFiles(self): 
-
         284          """ 
- 285          Read the data files and instrument files into the pattern objects 
- 286           
- 287          @return: no return value 
- 288          """ 
- 289          # since the job will run somewhere else, pack all its datafiles. 
- 290          for pattern in self.listObjects(Pattern, True): 
- 291              datafiles = pattern.get('Datafile') 
- 292              instruments = pattern.get('Instrumentfile') 
- 293              uniquefiles = set() 
- 294              for index in pattern.range(): 
- 295                  if datafiles and datafiles[index]: 
- 296                      uniquefiles.add(datafiles[index]) 
- 297                  if instruments and instruments[index]: 
- 298                      uniquefiles.add(instruments[index]) 
- 299              for fname in uniquefiles: 
- 300                  pattern.importFile(fname) 
- 301                    
- 302          return  
-
         303    
-
         304 -    def importEngineFile(self, fullpath, refinementObjName=None): 
-
         305          """ 
- 306          Import an engine file (EXP or pcr files). A refinement will be created 
- 307          based on the data in the imported engine file.  
- 308           
- 309          @type fullpath:    file path string 
- 310          @param fullpath:   the full file path of the engine file to be imported 
- 311          @type refinementObjName:    string 
- 312          @param refinementObjName:    the proposed name of the refinement object to be created.  
- 313                          If the refinementObjName is None, the engine file name will be used 
- 314          @return:    no return value 
- 315          """ 
- 316          import os.path 
- 317           
- 318          # if there is already one fit loaded, keep the path of the project, if 
- 319          # this is the first fit loaded, change the path 
- 320          if len(self.listRefinements()) == 0: 
- 321              self.basepath = os.path.dirname(fullpath) 
- 322           
- 323          filename = os.path.basename(fullpath) 
- 324          if not refinementObjName: 
- 325              refinementObjName = os.path.splitext(filename)[0] 
- 326       
- 327          refinementObjName = self.verifyFitName(refinementObjName) 
- 328           
- 329          fileformat = os.path.splitext(filename)[1].lower() 
- 330          if fileformat == ".exp": 
- 331              from diffpy.pygsas.fitloader import loadFitFromEXP 
- 332              enginefit = loadFitFromEXP(fullpath) 
- 333          elif fileformat == ".pcr": 
- 334              from diffpy.pyfullprof.fit import Fit as EngineFit 
- 335              from diffpy.pyfullprof.pcrfilereader import ImportFitFromFullProf 
- 336              importfile = ImportFitFromFullProf(fullpath) 
- 337              enginefit = EngineFit(None) 
- 338              importfile.ImportFile(enginefit) 
- 339          else: 
- 340              raise SrrFileError('Engine file name extension is not supported.' + \ 
- 341                                 'Only EXP and pcr files are currently supported in SrRietveld.') 
- 342   
- 343          enginefit.fixAll() 
- 344          fit = self.importEngineFit(enginefit, refinementObjName, fullpath) 
- 345           
- 346          self.altered = True 
- 347           
- 348          return fit 
-
         349    
-
         350 -    def importEngineFit(self, enginefit, name, fullpath, index=None): 
-
         351          """ 
- 352          Import an engine Fit object. It is provided for backward compatiblity,  
- 353          namely when the fit is created using xml interface. 
- 354           
- 355          @type enginefit: an engine Fit object 
- 356          @param enginefit: the engine fit, which contains all the information for  
- 357                          one refinement for that engine (GSAS or FullProf) 
- 358          @type name:    string 
- 359          @param name:    the name to be assigned to the new Fit object 
- 360          @type fullpath: file path string    
- 361          @param fullpath: the fullpath is used to locate the supplement files  
- 362                          (data, instrument, engine files) 
- 363          @type index:     
- 364          @param index:    the index to a Fit in a Fit array ( not applicable if shape 
- 365                       is given ) 
- 366           
- 367          @return: the new Fit object 
- 368          """ 
- 369   
- 370          # Try to find the files 
- 371          # since all path in engine files are relative to the file itself,  
- 372          # get the dir of the engine file first 
- 373          engineFileDir = os.path.dirname(fullpath)  
- 374   
- 375          # fit is the storage of the new Fit. 
- 376          fit = importEngineObject(self, enginefit, name, index=index) 
- 377           
- 378          # save the abs path in patterns     
- 379          patterns = fit.getObject('Pattern') 
- 380          for bankid, pattern in enumerate(patterns): 
- 381               
- 382              absPath = {} 
- 383              for param in ['Datafile', 'MFIL', 'Instrumentfile']: 
- 384                  absPath[param] = None 
- 385                  ds = pattern.get(param) 
- 386                  if ds is None: 
- 387                      continue 
- 388                  p = str(pattern.get(param).first()) 
- 389                  if not p:# this parameter is not set 
- 390                      __message = 'The %s param is not set in the engine' % (param) 
- 391                      print __message 
- 392                      absPath[param] = "" 
- 393                  else: 
- 394                      absPath[param] = self.__getResourceFileAbsPath(p, engineFileDir) 
- 395                      # print warnings if file does not exist 
- 396                      if not os.path.exists(absPath[param]): # The file does not exist 
- 397                           
- 398                          paramDesc = '' 
- 399                          if param == 'Datafile': 
- 400                              paramDesc = 'data file' 
- 401                          elif param == 'MFIL': 
- 402                              paramDesc = 'incident spectrum' 
- 403                          elif param == 'Instrumentfile': 
- 404                              paramDesc = 'instrument file' 
- 405                               
- 406                          __warning = 'Can not find the ' + paramDesc + \ 
- 407                              ' for pattern %s, ' % (bankid + 1) + \ 
- 408                              'you may need to reload the file or input the right file path. '  
- 409                               
- 410                          from diffpy.srrietveld.utility import printWarning 
- 411                          printWarning(__warning) 
- 412                           
- 413              if absPath['Datafile'] is not None: 
- 414                  fit.loadDataFile(absPath['Datafile'], index = 0, bankid = bankid) 
- 415              if absPath['Instrumentfile'] is not None: 
- 416                  fit.loadInstrumentFile(absPath['Instrumentfile'], index = 0, bankid = bankid) 
- 417              if absPath['MFIL'] is not None: 
- 418                  fit.loadIncidentSpectrumFile(absPath['MFIL'], index = 0, bankid = bankid) 
- 419           
- 420          fit.saveEngineFile(fullpath) 
- 421          #fit.reshape((1, ), ['Index', ], repeat=True) 
- 422          fit.reshape((1, ), ['Index', ], repeat=True) 
- 423          fit.set('Index', [1]) 
- 424          fit.alive = 0 
- 425           
- 426          return fit 
-
         427    
-
         428 -    def importProject(self, projPath): 
-
         429          """ 
- 430          Import the refinements from another project file. 
- 431          @type projPath:    file path string 
- 432          @param projPath:    the file path of the project to be imported.  
- 433          @return:    no return value 
- 434          """ 
- 435          tmpfile, tmppath = tempfile.mkstemp() 
- 436          # has to check the name of the refinement not the same to the  
- 437          # existing refinement, so needs to copy the refinements to another 
- 438          # place before copy 
- 439          shutil.copy(projPath, tmppath) 
- 440          proj = Project(tmppath) 
- 441           
- 442          for fit in proj.listRefinements(): 
- 443              fit.rename(self.verifyFitName(fit.name)) 
- 444           
- 445          self.add(proj) 
- 446           
- 447          return 
-
         448   
-
         449 -    def listParams(self, obj, recursively=False, excluded=[]): 
-
         450          """ 
- 451          List all parameters in an object. 
- 452           
- 453           
- 454          @type obj:     a data object 
- 455          @param obj:    the object whose parameters to be listed 
- 456          @type recursively:    boolean 
- 457          @param recursively:    if True, the parameters in the sub-objects will  
- 458                                  be included. False otherwise 
- 459          @type excluded:    a list of objects, whose child parameters should be  
- 460                              excluded in the result 
- 461          @return:    a list of parameters (Dataset object). 
- 462          """ 
- 463          params = [] 
- 464          for name in obj.info.listParams(): 
- 465              # to all the datasets 
- 466               
- 467              params.append(obj.get(name)) 
- 468               
- 469          # subobjects 
- 470          if recursively: 
- 471              for childobj in obj.listObjects(): 
- 472                  if childobj.name not in excluded: 
- 473                  #    continue 
- 474                  #for grandchildobj in childobj.listObjects(Refinable, True): 
- 475                      params.extend(self.listParams(childobj, True)) 
- 476           
- 477          return params 
-
         478   
-
         479 -    def listRefinementNames(self): 
-
         480          """Different from the methdo listRefinemetns, this function will return  
- 481          a list of names of the refinements 
- 482          @return: the names of the refinements in this project""" 
- 483           
- 484          return [refObj.name for refObj in self.listRefinements()] 
-
         485   
-
         486 -    def plot(self, ydatasets, xdataset=None, xlabel=''): 
-
         487          """ 
- 488          Make a plot of selected Dataset objects 
- 489          @type ydatasets:    a list of Dataset objects 
- 490          @param ydatasets:   contains the list of y values in the plot 
- 491          @type xdataset:    a Dataset object 
- 492          @param xdataset:    the x values in the plot. If xdataset is None 
- 493                              a list of consecutive integers will be used 
- 494          @return:    the plot figure object 
- 495          """ 
- 496           
- 497          from diffpy.refinementdata.plot.figure import Figure 
- 498          name = ','.join([dataset.name for dataset in ydatasets]) 
- 499          figure = Figure(self.mainframe, name) 
- 500          if xlabel: 
- 501              figure.selection.xlabel = xlabel 
- 502           
- 503          # prepare the metadata, using all refinement metadata 
- 504          datasets = ydatasets[:] 
- 505          if xdataset: 
- 506              datasets.append(xdataset) 
- 507          fits = set() 
- 508          for dataset in datasets: 
- 509              fits.add(dataset.owner.findRefinement()) 
- 510           
- 511          metadata = [] 
- 512          for fit in fits: 
- 513              metadata.extend(fit.getMetaData()) 
- 514           
- 515          figure.plot(xdataset, ydatasets, metadata=metadata) 
- 516          self.plots.append(figure) 
- 517          figure.frame.updateIndexBox() 
- 518          return figure 
-
         519   
-
         520 -    def plotHistory(self, datasets): 
-
         521          """ 
- 522          Make a plot of the historic values of selected parameters. 
- 523           
- 524          @type datasets:    a list of Dataset objects 
- 525          @param datasets:    the data to be plotted 
- 526          @return:    no return value 
- 527          """ 
- 528          histories = [] 
- 529          for dataset in datasets: 
- 530              history = dataset.owner.getHistory(dataset.name) 
- 531              if history is not None: 
- 532                  histories.append(history) 
- 533                   
- 534          self.plot(histories, xlabel='step') 
- 535          return 
-
         536   
-
         537 -    def plotPatterns(self, objects): 
-
         538          """Make a quick plot of patterns. 
- 539           
- 540          objects -- a list of selected objects 
- 541          """ 
- 542          from diffpy.refinementdata.plot.patternfigure import PatternFigure 
- 543          def _plotPattern(_pattern): 
- 544              _figure = PatternFigure(self.mainframe, _pattern.path, figsize=(6, 4)) 
- 545              _figure.selection.addMetadata(_pattern.findRefinement().getMetaData()) 
- 546              _figure.plotPattern(_pattern) 
- 547              _figure.frame.updateIndexBox() 
- 548              self.plots.append(_figure) 
-
         549               
- 550               
- 551          for object in objects: 
- 552              if isinstance(object, Pattern): 
- 553                  _plotPattern(object) 
- 554              else: 
- 555                  patterns = object.listObjects(Pattern, True) 
- 556                  if patterns: 
- 557                      for pattern in patterns: 
- 558                          _plotPattern(pattern) 
- 559          return 
-
         560   
-
         561 -    def updateFit(self, fitrt):  
-
         562          """ 
- 563          Update the fit data with an fit object. 
- 564           
- 565          @param fitrt:    the run-time fit instance 
- 566          @return:    no return value 
- 567          """          
- 568          # change steps. 
- 569          fitrt.fit.steps[fitrt.index] = fitrt.step+1 
- 570   
- 571          def _updateValue(parpath): 
- 572              # get the latest value from the refinement 
- 573              _value = fitrt.enginefit.getByPath(parpath) 
- 574   
- 575              # get the historical storge of the parameter 
- 576              _history = fitrt.fit.getHistoryByPath(parpath) 
- 577              if _history is None: 
- 578                  _history = fitrt.fit.addHistoryByPath(parpath) 
- 579   
- 580              _history.update(fitrt.step, _value, fitrt.index) 
- 581               
- 582              # data is the up-to-date storage 
- 583              _param = fitrt.fit.getByPath(parpath) 
- 584              _param[fitrt.index] = _value 
- 585               
- 586              return 
- 587               
- 588          def _updateSigma(constraint):            
- 589              # get the sigma, using the constraint's parname without index 
- 590              _path = constraint.owner.path+'.'+constraint.parname 
- 591              _sigma = fitrt.fit.getSigmaByPath(_path) 
- 592               
- 593              if _sigma is None: 
- 594                  _sigma = fitrt.fit.addSigmaByPath(_path) 
- 595               
- 596              if constraint.index is not None: 
- 597                  if fitrt.index is None: 
- 598                      _index = constraint.index 
- 599                  else: 
- 600                      if isinstance(fitrt.index, tuple):  
- 601                          _index = list(fitrt.index) 
- 602                      else: 
- 603                          _index = [fitrt.index,] 
- 604                      _index.append(constraint.index) 
- 605                      _index = tuple(_index) 
- 606                  _sigma[_index] = constraint.sigma 
- 607              else: 
- 608                  _sigma[fitrt.index] = constraint.sigma 
- 609               
- 610              return 
- 611   
- 612          def _tolist(refl): 
- 613              # put the reflection positiosn to a list of positions 
- 614              _value = [] 
- 615              for key in refl: 
- 616                  for dd in refl[key]: 
- 617                      for val in dd.values(): 
- 618                          _value.append(val[0]) 
- 619              #_value = [x[0] for x in refl[0][0].values()] 
- 620              _value.sort() 
- 621              return _value  
- 622               
- 623          # get all constrained parameter paths, but count paramlist only once. 
- 624          pathlist = [ c.owner.path+'.'+c.parname for c in fitrt.enginefit.Refine.constraints] 
- 625          pathlist = set(pathlist) 
- 626           
- 627          for path in pathlist:             
- 628              _updateValue(path) 
- 629              # update Uiso in fullprof or Biso in GSAS refinemetns 
- 630              if path.endswith('Uiso') or path.endswith('Biso'): 
- 631                  if path.endswith('Uiso'): 
- 632                      _path = path.rsplit('.', 1)[0] + '.Biso' 
- 633                  elif path.endswith('Biso'): 
- 634                      _path = path.rsplit('.', 1)[0] + '.Uiso' 
- 635                  _updateValue(_path) 
- 636               
- 637          for constraint in fitrt.enginefit.Refine.constraints: 
- 638              _updateSigma(constraint) 
- 639              # update Uiso in fullprof or Biso in GSAS refinemetns 
- 640              if constraint.parname in ['Biso', 'Uiso']: 
- 641                  if constraint.parname == 'Uiso': 
- 642                      _parname = 'Biso' 
- 643                  elif constraint.parname == 'Biso': 
- 644                      _parname = 'Uiso' 
- 645                   
- 646                  _path = constraint.owner.path + '.' + _parname 
- 647                  _sigma = fitrt.fit.getSigmaByPath(_path) 
- 648               
- 649                  if _sigma is None: 
- 650                      _sigma = fitrt.fit.addSigmaByPath(_path) 
- 651                   
- 652                  if _parname == 'Biso': 
- 653                      _val = constraint.sigma * 8 * math.pow(math.pi, 2) 
- 654                  elif _parname == 'Uiso': 
- 655                      _val = constraint.sigma / ( 8 * math.pow(math.pi, 2)) 
- 656                   
- 657                  if constraint.index is not None: 
- 658                      if fitrt.index is None: 
- 659                          _index = constraint.index 
- 660                      else: 
- 661                          if isinstance(fitrt.index, tuple):  
- 662                              _index = list(fitrt.index) 
- 663                          else: 
- 664                              _index = [fitrt.index,] 
- 665                          _index.append(constraint.index) 
- 666                          _index = tuple(_index) 
- 667                       
- 668                      _sigma[_index] = _val 
- 669                  else: 
- 670                      _sigma[fitrt.index] = _val 
- 671   
- 672   
- 673          _updateValue('Chi2') 
- 674           
- 675          for pattern in fitrt.enginefit.Pattern.get(): 
- 676              _updateValue(pattern.path+'.Rp') 
- 677              _updateValue(pattern.path+'.Rwp') 
- 678               
- 679              # update the histogram value saved in pattern 
- 680              for dname in ['xobs', 'yobs', 'ycal', 'refl']: 
- 681                  mypattern = fitrt.fit.getByPath(pattern.path) 
- 682                  dataset = mypattern.get(dname) 
- 683                  if dname == 'refl': 
- 684                      data = _tolist(getattr(pattern, '_reflections')) 
- 685                  else: 
- 686                      data = getattr(pattern, '_'+dname) 
- 687                  if dataset is None: 
- 688                      mypattern.set(dname, data, repeat=True, grow=True) 
- 689                  else: 
- 690                      dataset[fitrt.index] = data 
- 691           
- 692           
- 693          if self.mainframe: 
- 694              from diffpy.refinementdata.plot import backend 
- 695              backend.lock() 
- 696              if fitrt.step > 0: 
- 697                  self.mainframe.updateStrategyPanel(fitrt) 
- 698              self.updatePlot(fitrt.index) 
- 699              backend.unlock() 
- 700          return 
- 701   
-
         702 -    def updatePaths(self): 
-
         703          """ 
- 704          Update the histogram and instrument file paths saved in the project 
- 705          @return:    no return value 
- 706          """ 
- 707          for fit in self.listRefinements(): 
- 708              patterns = fit.getObject("Pattern") 
- 709              for pt in patterns: 
- 710                  for param in ['Datafile', 'MFIL', 'Instrumentfile']: 
- 711                      ds = pt.get(param) 
- 712                      if ds: 
- 713                          for idx in fit.range(): 
- 714                              fit.findFileFromDataset(ds, idx) 
- 715          return 
-
         716       
-
         717 -    def updatePlot(self, index=None): 
-
         718          """ 
- 719          Update all plots based the data in the project 
- 720           
- 721          @type index: tuple or int 
- 722          @param index: the index of the curve in the plot 
- 723          @return: no return value 
- 724          """ 
- 725          for plot in self.plots[:]: 
- 726              if plot.alive: 
- 727                  plot.update(index) 
- 728              else: 
- 729                  self.plots.remove(plot) 
- 730           
- 731          return 
-
         732       
-
         733 -    def saveToDisk(self, fullpath): 
-
         734          """ 
- 735          Save the project data to local drive. 
- 736           
- 737          @type fullpath:     file path string 
- 738          @param fullpath:     the file path to save the project data 
- 739          @return:    no return value 
- 740          """ 
- 741          self.save() 
- 742          try: 
- 743               
- 744              # if file names are same, remove the original one first 
- 745              srcpath = self.fullpath 
- 746               
- 747              if self.fullpath == fullpath: 
- 748                  tmpfobj, tmpfpath = tempfile.mkstemp() 
- 749                  shutil.copy2(self.fullpath, tmpfpath) 
- 750                  os.remove(fullpath) 
- 751                  srcpath = tmpfpath 
- 752               
- 753              shutil.copy2(srcpath, fullpath) 
- 754              # change the mode of a new file 
- 755              os.chmod(fullpath, stat.S_IRUSR|stat.S_IWUSR|stat.S_IRGRP|stat.S_IROTH) 
- 756              self.basepath = os.path.dirname(fullpath) 
- 757              self.fullpath = fullpath 
- 758              self.__updateRelativePaths() 
- 759              self.save() 
- 760                           
- 761          except Exception,e: 
- 762              if GLOBALS.isDebug: 
- 763                  import sys, traceback 
- 764                  exc_type, exc_value, exc_traceback = sys.exc_info() 
- 765                  traceback.print_exception(exc_type, exc_value, exc_traceback, 
- 766                                limit=2, file=sys.stdout) 
- 767              else: 
- 768                  raise SrrIOError("Can not save file: " + str(e)) 
- 769   
- 770          return 
-
         771       
-
         772 -    def verifyFitName(self, fitName): 
-
         773          """ 
- 774          Compare the fitname with existing names of refienments in the project.  
- 775          A valid name will be returned.  
- 776           
- 777              - All the I{dots (.)} will be replaced with I{underscore (_)}  
- 778              - The same refinement names will be surfixed with numbers with brakets 
- 779                  such as I{Refinement}, I{Refinement (1)}, I{Refinement (2)} 
- 780          @type fitName:    string 
- 781          @param fitName:    refinement name to be verified 
- 782           
- 783          @return:    If fitName is valid, return value  
- 784                      will be the same as fitName; if fitName conains invalid  
- 785                      characters or has duplications, a valid refinement name will 
- 786                      be returned   
- 787          """ 
- 788          nameid = 0 
- 789          fitName = fitName.replace('.', '_') 
- 790          for fit in self.listRefinements(): 
- 791              if fit.name == fitName: 
- 792                  nameid += 1 
- 793          if nameid != 0: 
- 794              newname = fitName + "_%s"%(nameid) 
- 795          else: 
- 796              newname = fitName 
- 797               
- 798          return newname 
-
         799       
-
         800 -    def __export(self, filePath): 
-
         801          """ 
- 802          Export the project to another location, without changing the original file 
- 803          This is different from saving as, since the original state, basepath,  
- 804          etc. of the project is not changed. The original file will be copied to  
- 805          a temp dir, and then the project will be saved to the export directory.  
- 806          Then the protected old file will be saved back 
- 807           
- 808          @type filePath:    file path string 
- 809          @param filePath:     the file path where the project will be exported 
- 810          @return:    no return value 
- 811          """ 
- 812           
- 813          oldPath = self.fullpath 
- 814          oldBase = self.basepath 
- 815          oldAltered = self.altered 
- 816          tmpfile, tmppath = tempfile.mkstemp() 
- 817           
- 818          shutil.copy(self.fullpath, tmppath) 
- 819           
- 820          self.saveToDisk(filePath) 
- 821           
- 822          shutil.copy(tmppath, oldPath) 
- 823          try: 
- 824              os.remove(tmppath) 
- 825          except: 
- 826              UTILS.printWarning("Can not delete the temp project file after archive the project") 
- 827           
- 828          self.fullpath = oldPath 
- 829          self.basepath = oldBase 
- 830          self.altered = oldAltered 
- 831          self.__updateRelativePaths() 
- 832           
- 833          return 
-
         834       
-
         835 -    def __updateRelativePaths(self, basepath = None): 
-
         836          """ 
- 837          As long as the base path is changed, the relative paths saved in  
- 838          patterns need to be updated.  
- 839           
- 840          @type basepath:    folder path string 
- 841          @param basepath: the basepath used to determine the relative path, use  
- 842                      project basepath if None 
- 843          @return:    no return value 
- 844           
- 845          """         
- 846          if basepath is None: basepath = self.basepath 
- 847           
- 848          fits = self.listRefinements() 
- 849          for fit in fits: 
- 850              patterns = fit.getObject("Pattern") 
- 851              for pt in patterns: 
- 852                  for param in ['Datafile', 'MFIL', 'Instrumentfile']: 
- 853                      ds = pt.get(param) 
- 854                      if ds is not None: 
- 855                          for idx in fit.range(): 
- 856                              filepath = fit.findFileFromDataset(ds, idx) 
- 857                              if filepath is not None: 
- 858                                  fit.saveFilePathToDataset(filepath, ds,  
- 859                                                            index = idx,  
- 860                                                            basepath = basepath) 
- 861           
- 862          return 
-
         863       
-
         864 -    def __getResourceFileAbsPath(self, relFilePath, engineFileDir): 
-
         865          """ 
- 866          Get the absolute file path. The filePath may be relative, to the engine file 
- 867          directory, which may also be different from the current working dir 
- 868           
- 869          @type relFilePath: file path string 
- 870          @param relFilePath: relative file path 
- 871          @type engineFileDir: directory path string 
- 872          @param engineFileDir: the directory where the engine file sits 
- 873          @return: the absolute file path 
- 874          """ 
- 875          absFilePath = None 
- 876          if not os.path.isabs(relFilePath): 
- 877              absFilePath = os.path.join(engineFileDir, relFilePath) 
- 878          else: 
- 879              absFilePath = relFilePath 
- 880          return absFilePath 
-
         881   
- 882  # end class Project 
- 883   
- 884  ## Import/Export an engine object.  
- 885  # The following functions Define the translation from Rietveld engine classes  
- 886  # to RefinementData classes 
- 887       
-
         888 -def importEngineObject(myobjowner, engineobj, id, index=None): 
-
         889      """ 
- 890      Import an engine object into myobject 
- 891       
- 892      @type myobjowner:    an data object 
- 893      @param myobjowner:    the owner of the refinement object to be created 
- 894      @type engineobj:    an engine fit object 
- 895      @param engineobj:     the engine object to be imported 
- 896      @type id:    integer or string 
- 897      @param id:    the name/index of the refinement object to be created/obtained in myobjowner 
- 898      @type index:    index or tuple 
- 899      @param index:    when modify an object, indicate the index to the value to be modified 
- 900       
- 901      return: the newly created local object 
- 902      """ 
- 903      # Do not import refine and its children 
- 904      if engineobj.__class__.__name__.startswith('Refine'): 
- 905          return None 
- 906       
- 907            
- 908      myobj = myobjowner.getObject(id) 
- 909      if myobj is None: 
- 910          #Get the corresponding HDF5 class 
- 911          objclassname = engineobj.__class__.__name__ 
- 912          if objclassname.startswith('Fit'): 
- 913              myobjclass = Refinement 
- 914          elif objclassname.startswith('Pattern'): 
- 915              myobjclass = Pattern 
- 916          elif objclassname.startswith('Phase'): 
- 917              myobjclass = Phase 
- 918          elif objclassname.startswith('Profile'): 
- 919              myobjclass = Profile 
- 920          elif engineobj.name.startswith('Atom['): 
- 921              myobjclass = Atom 
- 922          elif engineobj.name.startswith('ExcludedRegion['): 
- 923              myobjclass = ExcludedRegion 
- 924          else: 
- 925              # if nothing matches, return the default storage type 
- 926              myobjclass = Refinable 
- 927           
- 928          #Create the HDF5 Object 
- 929          if isinstance(myobjowner, ObjectList): 
- 930              assert(id==len(myobjowner)) 
- 931              myobj = myobjowner.appendObject(myobjclass) 
- 932          else: 
- 933              myobj = myobjowner.addObject(id, myobjclass) 
- 934           
- 935          myobj.setAttr('rietveldcls',  engineobj.__class__.__module__ + '.'  
- 936                                      + engineobj.__class__.__name__) 
- 937          engineobjclass = getattr(__import__(engineobj.__class__.__module__,  
- 938                                              globals(), locals(),  
- 939                                              [engineobj.__class__.__name__],  -1),  
- 940                                              engineobj.__class__.__name__) 
- 941          myobj.info = ObjectInfo(engineobjclass) 
- 942          
- 943      if engineobj.__class__.__name__.startswith("Contribution"): 
- 944          myobj.setAttr("phaseindex", engineobj.getPhaseIndex()) 
- 945          myobj.setAttr("patternindex", engineobj.getPatternIndex()) 
- 946           
- 947      def _importEngineParameter(infodict): 
- 948          for param in infodict: 
- 949              # update parameter itself 
- 950              dataset = myobj.get(param) 
- 951   
- 952              if dataset is None: 
- 953                  info = infodict[param] 
- 954                  grow = False 
- 955                  #NOTE: since there are two engine classes for the same thing, we  
- 956                  #      check its name instead the type. 
- 957                  if info.__class__.__name__ == 'StringInfo' and not info.fixlen: 
- 958                      grow = True 
- 959   
- 960                  dataset =  myobj.set(param, engineobj.get(param), repeat=True, grow=grow) 
- 961                  if dataset.name == 'BACK': 
- 962                      labels = myobj.labels 
- 963                      labels.append('Order') 
- 964                      dataset.setLabels(labels) 
- 965              else: 
- 966                  dataset[index] = engineobj.get(param)                
-
         967               
- 968      # add parameters 
- 969      _importEngineParameter(engineobj.ParamDict) 
- 970   
- 971      # add parameter list 
- 972      _importEngineParameter(engineobj.ParamListDict) 
- 973   
- 974      # add subclass, which is a single object 
- 975      for childname in engineobj.ObjectDict: 
- 976          engineobjchild = engineobj.get(childname) 
- 977          importEngineObject(myobj, engineobjchild, childname, index=index) 
- 978       
- 979      # add container, which is a list of objects 
- 980      for childname in engineobj.ObjectListDict: 
- 981          mycontainer = myobj.getObject(childname) 
- 982          if mycontainer is None: 
- 983              mycontainer = myobj.addObject(childname, ObjectList) 
- 984              mycontainer.info = ObjectInfo() 
- 985          enginecontainer = engineobj.get(childname) 
- 986          for i in range(len(enginecontainer)): 
- 987              engineobjchild = engineobj.get(childname, i) 
- 988              importEngineObject(mycontainer, engineobjchild, i, index=index) 
- 989                
- 990      return myobj 
- 991    
- 992               
-
         993 -def exportEngineObject(engineobjowner, key, myobj, index=None): 
-
         994      """ 
- 995      Export a saved HDF5Object to an engine object. 
- 996       
- 997      @type engineobjowner:    a data object 
- 998      @param engineobjowner:    the owner of the engine object  
- 999       
-1000      @type myobj:    a refinement object 
-1001      @param myobj:    the source refinement object 
-1002      @type index:    interger or tuple 
-1003      @param index:    the index to the single value if the object is multiplexed 
-1004       
-1005      @return: the newly created engine object 
-1006      """ 
-1007      try: 
-1008          engineclassname = myobj.getAttr('rietveldcls') 
-1009          modulename, classname = engineclassname.rsplit('.', 1) 
-1010          module =  __import__(modulename, globals(), locals(), [classname],  -1) 
-1011          engineclass = getattr(module,  classname) 
-1012      except (ImportError, AttributeError, ValueError): 
-1013          #NOTE: If one class is removed after upgrade, do error handling here. 
-1014          raise DataError('Unknown object "%s" found.'%engineclassname) 
-1015   
-1016      engineobj = engineclass(engineobjowner) 
-1017       
-1018      if engineobjowner is not None: 
-1019          engineobjowner.set(key, engineobj) 
-1020           
-1021      # traverse the HDF5Object 
-1022      import numpy 
-1023      for param in myobj.list(): 
-1024          if param.name not in engineobj.ParamDict and param.name not in engineobj.ParamListDict: 
-1025              continue 
-1026          if len(param.shape) == 0: # unrefined fit 
-1027              value = param.first() 
-1028          else: 
-1029              value = param[index] 
-1030           
-1031          if isinstance(value, numpy.ndarray): 
-1032              if value.ndim == 1: 
-1033                  for x in value: 
-1034                      engineobj.set(param.name, x) 
-1035              elif value.ndim == 0: 
-1036                  engineobj.set(param.name, value[()]) 
-1037              else: 
-1038                  raise DataError('Parameter "%s" has more than one dimensions' %param) 
-1039              continue 
-1040          engineobj.set(param.name, value) 
-1041           
-1042      # parse the object 
-1043      for myobjchild in myobj.objects: 
-1044          subkey = myobjchild.name 
-1045          if isinstance(myobjchild, ObjectList): 
-1046              # this is a container object 
-1047              for obj in myobjchild.objects: 
-1048                  exportEngineObject(engineobj, subkey, obj, index) 
-1049          else:  
-1050              exportEngineObject(engineobj, subkey, myobjchild, index) 
-1051               
-1052      return engineobj 
-
        1053   
-
        1054 -def copyObjectData(srcobj, destobj, srcindexlist, destindexlist): 
-
        1055      """ 
-1056      Copy data to another object. 
-1057       
-1058      srcobj        -- the source object 
-1059      destobj       -- the target parent object  
-1060      srcindexlist  -- a list of indices to read data from srcobj 
-1061      destindexlist -- a list of indices to write data to destobj 
-1062      """     
-1063      # copy attributes 
-1064      for attr, val in srcobj.listAttrs(withValue=True): 
-1065          destobj.setAttr(attr, val) 
-1066   
-1067      destobj.copyMeta(srcobj) 
-1068       
-1069      # set data  
-1070      for srcdata in srcobj.list(): 
-1071          destdata = destobj.get(srcdata.name) 
-1072          if destdata is None: 
-1073              # create one 
-1074              destdata = destobj.replicate(srcdata, srcindexlist[0], None) 
-1075           
-1076          for srcindex, destindex in zip(srcindexlist, destindexlist): 
-1077              destdata[destindex] = srcdata[srcindex] 
-1078           
-1079      if isinstance(srcobj, ObjectList): 
-1080          # traverse by index 
-1081          for i, childobj in enumerate(srcobj.listObjects()): 
-1082              destchildobj =  destobj.getObject(i) 
-1083              if destchildobj is None: 
-1084                  # the destobj's children are down by 1 
-1085                  destchildobj = destobj.appendObject(childobj.__class__) 
-1086               
-1087              # copy data 
-1088              copyObjectData(childobj, destchildobj, srcindexlist, destindexlist) 
-1089      else: # a normal object 
-1090          # traverse by name 
-1091          for childobj in  srcobj.listObjects(): 
-1092              destchildobj = destobj.getObject(childobj.name) 
-1093              if destchildobj is None: 
-1094                  destchildobj = destobj.addObject(childobj.name, childobj.__class__) 
-1095                   
-1096              copyObjectData(childobj, destchildobj, srcindexlist, destindexlist) 
-1097               
-1098      if isinstance(srcobj, Refinable): 
-1099          # A Refinable instance. Both src and dest has history and sigma by default 
-1100          copyObjectData(srcobj.history,  destobj.history, srcindexlist, destindexlist) 
-1101          copyObjectData(srcobj.sigma,  destobj.sigma, srcindexlist, destindexlist) 
-1102           
-1103      return destobj 
-
        1104  # EOF 
-1105   
-
        -
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        diffpy.srrietveld
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        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:58 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.project.Project-class.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.project.Project-class.html deleted file mode 100644 index 444923e4..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.project.Project-class.html +++ /dev/null @@ -1,1216 +0,0 @@ - - - - - diffpy.srrietveld.project.Project - - - - - - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module project :: - Class Project - - - - - -
        [frames] | no frames]
        -
        - -

        Class Project

        source code

        -
        -                       object --+        
-                                |        
-refinementdata.hdf5.object.Object --+    
-                                    |    
-       refinementdata.project.Project --+
-                                        |
-                                       Project
-
        - -
        -

        Project class defines a SrRietveld refinement project. It consists of - a number of single refinements. A project can call different Rietveld - engines to run its refinements.

        -

        A project object contains the list of refinemenets, and list of - jobs.

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - path, - mode='a', - mainframe=None)
        - Create a SrRietveld project from saved project data file.        		 - source code - -
        - -
        -   - - - - - - -
        addJob(self, - job)
        - Add a job to the job list of the project        		 - source code - -
        - -
        -   - - - - - - -
        addToZip(self, - zipFilePath)
        - Archive the project data file, and other associated files, such as - the histogram files, instrument files, and incident spectrum files - into a zip folder.        		 - source code - -
        - -
        -   - - - - - - -
        close(self)
        - Close the opened project.        		 - source code - -
        - -
        -   - - - - - - -
        deleteJob(self, - job)
        - Delete job from the job list        		 - source code - -
        - -
        -   - - - - - - -
        exportEngineFit(self, - refinementObj, - index=None)
        - Build an engine fit based on given fit and index.        		 - source code - -
        - -
        -   - - - - - - -
        getRefinementByName(self, - name)
        - Get the refinement object by its name        		 - source code - -
        - -
        -   - - - - - - -
        importDataFiles(self)
        - Read the data files and instrument files into the pattern objects        		 - source code - -
        - -
        -   - - - - - - -
        importEngineFile(self, - fullpath, - refinementObjName=None)
        - Import an engine file (EXP or pcr files).        		 - source code - -
        - -
        -   - - - - - - -
        importEngineFit(self, - enginefit, - name, - fullpath, - index=None)
        - Import an engine Fit object.        		 - source code - -
        - -
        -   - - - - - - -
        importProject(self, - projPath)
        - Import the refinements from another project file.        		 - source code - -
        - -
        -   - - - - - - -
        listParams(self, - obj, - recursively=False, - excluded=[])
        - List all parameters in an object.        		 - source code - -
        - -
        -   - - - - - - -
        listRefinementNames(self)
        - Different from the methdo listRefinemetns, this function will return - a list of names of the refinements        		 - source code - -
        - -
        -   - - - - - - -
        plot(self, - ydatasets, - xdataset=None, - xlabel='')
        - Make a plot of selected Dataset objects        		 - source code - -
        - -
        -   - - - - - - -
        plotHistory(self, - datasets)
        - Make a plot of the historic values of selected parameters.        		 - source code - -
        - -
        -   - - - - - - -
        plotPatterns(self, - objects)
        - Make a quick plot of patterns.        		 - source code - -
        - -
        -   - - - - - - -
        saveToDisk(self, - fullpath)
        - Save the project data to local drive.        		 - source code - -
        - -
        -   - - - - - - -
        updateFit(self, - fitrt)
        - Update the fit data with an fit object.        		 - source code - -
        - -
        -   - - - - - - -
        updatePaths(self)
        - Update the histogram and instrument file paths saved in the project        		 - source code - -
        - -
        -   - - - - - - -
        updatePlot(self, - index=None)
        - Update all plots based the data in the project        		 - source code - -
        - -
        -   - - - - - - -
        verifyFitName(self, - fitName)
        - Compare the fitname with existing names of refienments in the - project.        		 - source code - -
        - -
        -

        Inherited from refinementdata.project.Project: - add, - addRefinement, - listRefinements, - removeRefinement -

        -

        Inherited from refinementdata.hdf5.object.Object: - addObject, - copy, - copyMeta, - delete, - exportFile, - get, - getAttr, - getByPath, - getFlatIndex, - getMetaData, - getMultiDimIndex, - getObject, - getPyObj, - hasAttr, - hasMeta, - importFile, - isDescendant, - list, - listAttrs, - listNames, - listObjects, - load, - loadLocalData, - loadLocalObjects, - loadObject, - move, - range, - readStr, - removeObject, - rename, - repeat, - replicate, - reshape, - save, - set, - setAttr, - setByPath, - setLabels, - setPyObj, - unset, - unsetAttr, - writeStr -

        -

        Inherited from object: - __delattr__, - __format__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__, - __sizeof__, - __str__, - __subclasshook__ -

        -
        - - - - - - - - - -
        - Properties
        -

        Inherited from refinementdata.hdf5.object.Object: - labels, - name, - ndim, - path -

        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - path, - mode='a', - mainframe=None) -
        (Constructor) -

        -         		source code  -
        - -

        Create a SrRietveld project from saved project data file.

        -
        -
        Parameters:
        -
          -
        • path (file path string) - the path of the project data file. If it does not exist, an empty - project will be created.
          • -
        • mode (one character string, possible value r, w, a) - the mode to open the project. -
            -
          • - r -- read, -
            • -
          • - w -- write, -
            • -
          • - a -- append -
            • -
          • -
        • mainframe (the main frame object) - the pointer to the main window in the GUI object set to be None - in script mode
          • -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        addJob(self, - job) -

        -         		source code  -
        - -

        Add a job to the job list of the project

        -
        -
        Parameters:
        -
          -
        • job (a Job object) - a refinement job to be added
          • -
        -
        Returns:
        -
        no return value
        -
        -
        -
        - -
        - -
        - - -
        -

        addToZip(self, - zipFilePath) -

        -         		source code  -
        - -

        Archive the project data file, and other associated files, such as the - histogram files, instrument files, and incident spectrum files into a zip - folder.

        -
        -
        Parameters:
        -
          -
        • zipFilePath (zip file path string) - the full path to save the zip file
          • -
        -
        Returns:
        -
        no return value
        -
        -
        -
        - -
        - -
        - - -
        -

        close(self) -

        -         		source code  -
        - -

        Close the opened project.

        -
        -
        Returns:
        -
        no return value
        -
        Overrides: - refinementdata.project.Project.close -
        -
        -
        -
        - -
        - -
        - - -
        -

        deleteJob(self, - job) -

        -         		source code  -
        - -

        Delete job from the job list

        -
        -
        Parameters:
        -
          -
        • job (a job object) - the job to be deleted
          • -
        -
        Returns:
        -
        no return value
        -
        -
        -
        - -
        - -
        - - -
        -

        exportEngineFit(self, - refinementObj, - index=None) -

        -         		source code  -
        - -

        Build an engine fit based on given fit and index.

        -
        -
        Parameters:
        -
          -
        • refinementObj (a diffpy.refinementdata.Refinement object or its derivatives) - a refinement usually contains a series of single refinements The - information will be read from this object to construct a engine - fit, which contains information for a single step refinement
          • -
        • index (tuple or int) - the index of the single refinement in the refinementObj a tuple - represents the index in a multidimensinal data if the - refinementObj is one dimensional, index can be an integer
          • -
        -
        Returns:
        -
        an engine fit object
        -
        -
        -
        - -
        - -
        - - -
        -

        getRefinementByName(self, - name) -

        -         		source code  -
        - -

        Get the refinement object by its name

        -
        -
        Parameters:
        -
          -
        • name (string) - the refinement name to get
          • -
        -
        Returns:
        -
        the refinement object with the name, None if there is no such - refinement object. If there are duplicate names, the first - refinement object with this name will be returned, and the - program with emit a warning
        -
        -
        -
        - -
        - -
        - - -
        -

        importDataFiles(self) -

        -         		source code  -
        - -

        Read the data files and instrument files into the pattern objects

        -
        -
        Returns:
        -
        no return value
        -
        -
        -
        - -
        - -
        - - -
        -

        importEngineFile(self, - fullpath, - refinementObjName=None) -

        -         		source code  -
        - -

        Import an engine file (EXP or pcr files). A refinement will be created - based on the data in the imported engine file.

        -
        -
        Parameters:
        -
          -
        • fullpath (file path string) - the full file path of the engine file to be imported
          • -
        • refinementObjName (string) - the proposed name of the refinement object to be created. If the - refinementObjName is None, the engine file name will be used
          • -
        -
        Returns:
        -
        no return value
        -
        -
        -
        - -
        - -
        - - -
        -

        importEngineFit(self, - enginefit, - name, - fullpath, - index=None) -

        -         		source code  -
        - -

        Import an engine Fit object. It is provided for backward compatiblity, - namely when the fit is created using xml interface.

        -
        -
        Parameters:
        -
          -
        • enginefit (an engine Fit object) - the engine fit, which contains all the information for one - refinement for that engine (GSAS or FullProf)
          • -
        • name (string) - the name to be assigned to the new Fit object
          • -
        • fullpath (file path string) - the fullpath is used to locate the supplement files (data, - instrument, engine files)
          • -
        • index () - the index to a Fit in a Fit array ( not applicable if shape is - given )
          • -
        -
        Returns:
        -
        the new Fit object
        -
        -
        -
        - -
        - -
        - - -
        -

        importProject(self, - projPath) -

        -         		source code  -
        - -

        Import the refinements from another project file.

        -
        -
        Parameters:
        -
          -
        • projPath (file path string) - the file path of the project to be imported.
          • -
        -
        Returns:
        -
        no return value
        -
        -
        -
        - -
        - -
        - - -
        -

        listParams(self, - obj, - recursively=False, - excluded=[]) -

        -         		source code  -
        - -

        List all parameters in an object.

        -
        -
        Parameters:
        -
          -
        • obj (a data object) - the object whose parameters to be listed
          • -
        • recursively (boolean) - if True, the parameters in the sub-objects will be included. - False otherwise
          • -
        • excluded (a list of objects, whose child parameters should be excluded in - the result)
          • -
        -
        Returns:
        -
        a list of parameters (Dataset object).
        -
        -
        -
        - -
        - -
        - - -
        -

        listRefinementNames(self) -

        -         		source code  -
        - -

        Different from the methdo listRefinemetns, this function will return a - list of names of the refinements

        -
        -
        Returns:
        -
        the names of the refinements in this project
        -
        -
        -
        - -
        - -
        - - -
        -

        plot(self, - ydatasets, - xdataset=None, - xlabel='') -

        -         		source code  -
        - -

        Make a plot of selected Dataset objects

        -
        -
        Parameters:
        -
          -
        • ydatasets (a list of Dataset objects) - contains the list of y values in the plot
          • -
        • xdataset (a Dataset object) - the x values in the plot. If xdataset is None a list of - consecutive integers will be used
          • -
        -
        Returns:
        -
        the plot figure object
        -
        -
        -
        - -
        - -
        - - -
        -

        plotHistory(self, - datasets) -

        -         		source code  -
        - -

        Make a plot of the historic values of selected parameters.

        -
        -
        Parameters:
        -
          -
        • datasets (a list of Dataset objects) - the data to be plotted
          • -
        -
        Returns:
        -
        no return value
        -
        -
        -
        - -
        - -
        - - -
        -

        plotPatterns(self, - objects) -

        -         		source code  -
        - -

        Make a quick plot of patterns.

        -

        objects -- a list of selected objects

        -
        -
        -
        -
        - -
        - -
        - - -
        -

        saveToDisk(self, - fullpath) -

        -         		source code  -
        - -

        Save the project data to local drive.

        -
        -
        Parameters:
        -
          -
        • fullpath (file path string) - the file path to save the project data
          • -
        -
        Returns:
        -
        no return value
        -
        -
        -
        - -
        - -
        - - -
        -

        updateFit(self, - fitrt) -

        -         		source code  -
        - -

        Update the fit data with an fit object.

        -
        -
        Parameters:
        -
          -
        • fitrt - the run-time fit instance
          • -
        -
        Returns:
        -
        no return value
        -
        -
        -
        - -
        - -
        - - -
        -

        updatePaths(self) -

        -         		source code  -
        - -

        Update the histogram and instrument file paths saved in the - project

        -
        -
        Returns:
        -
        no return value
        -
        -
        -
        - -
        - -
        - - -
        -

        updatePlot(self, - index=None) -

        -         		source code  -
        - -

        Update all plots based the data in the project

        -
        -
        Parameters:
        -
          -
        • index (tuple or int) - the index of the curve in the plot
          • -
        -
        Returns:
        -
        no return value
        -
        -
        -
        - -
        - -
        - - -
        -

        verifyFitName(self, - fitName) -

        -         		source code  -
        - -

        Compare the fitname with existing names of refienments in the project. - A valid name will be returned.

        -
          -
        • - All the dots (.) will be replaced with underscore (_) -
          • -
        • - The same refinement names will be surfixed with numbers with brakets - such as Refinement, Refinement (1), Refinement - (2) -
          • -
        -
        -
        Parameters:
        -
          -
        • fitName (string) - refinement name to be verified
          • -
        -
        Returns:
        -
        If fitName is valid, return value will be the same as fitName; if - fitName conains invalid characters or has duplications, a valid - refinement name will be returned
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
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        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.refinement-module.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.refinement-module.html deleted file mode 100644 index 7c9d7aa1..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.refinement-module.html +++ /dev/null @@ -1,213 +0,0 @@ - - - - - diffpy.srrietveld.refinement - - - - - - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
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        - - Package diffpy :: - Package srrietveld :: - Module refinement - - - - - -
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        - -

        Module refinement

        source code

        -

        Implementation of SrRietveld refinement class.

        - - - - - - - - - - -
        - Classes
        -   - - Refinement
        - The refinement (fit) class for SrRietveld. -
        - - - - - - - - - - - - - - - -
        - Variables
        -   - - PARAMNAMES = {'fullprof': {'Biso': 'AtomicDisplacementFactor.B... -
        -   - - __id__ = '$Id: refinement.py 6724 2011-08-25 09:31:57Z yshang $' -
        -   - - __package__ = 'diffpy.srrietveld' -
        -

        Imports: - DataFile, - DataRefinement, - Pattern, - Phase, - Profile, - StrategyFile, - UTILS, - copy, - os, - printWarning, - shutil -


        - - - - - - -
        - Variables Details
        - -
        - -
        -

        PARAMNAMES

        - -
        -
        -
        -
        Value:
        - 
        -{'fullprof': {'Biso': 'AtomicDisplacementFactor.Biso',
-              'Rp': 'Rp',
-              'Rwp': 'Rwp',
-              'Tmax': 'Thmin',
-              'Tmin': 'Thmax',
-              'Uiso': 'AtomicDisplacementFactor.Uiso',
-              'X': 'X',
-              'Y': 'Y',
-...
-
        -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:57 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.refinement-pysrc.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.refinement-pysrc.html deleted file mode 100644 index b8e58752..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.refinement-pysrc.html +++ /dev/null @@ -1,1007 +0,0 @@ - - - - - diffpy.srrietveld.refinement - - - - - - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module refinement - - - - - -
        [frames] | no frames]
        -
        -

        Source Code for Module diffpy.srrietveld.refinement

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2009 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Yingrui Shang 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14   
- 15  """Implementation of SrRietveld refinement class. 
- 16  """ 
- 17   
- 18  __id__ = "$Id: refinement.py 6724 2011-08-25 09:31:57Z yshang $" 
- 19   
- 20  import os, shutil, copy 
- 21  from diffpy.refinementdata.refinement import Refinement as DataRefinement  
- 22  from diffpy.srrietveld.utility import printWarning 
- 23  from diffpy.srrietveld.convert.datafile import DataFile 
- 24  from diffpy.srrietveld.convert.strategyfile import StrategyFile 
- 25  from diffpy.srrietveld.phase import Phase 
- 26  from diffpy.srrietveld.pattern import Pattern 
- 27  from diffpy.srrietveld.profile import Profile 
- 28  import diffpy.srrietveld.utility as UTILS 
- 29  from diffpy.srrietveld.paramnames import PARAMNAMES 
-
         30   
- 31 -class Refinement(DataRefinement): 
-
         32      '''The refinement (fit) class for SrRietveld. A refinement object contains 
- 33      information for a series of single refinement. It contains the subobjects 
- 34      such as the Pattern, Profile, and Contribution. ''' 
- 35           
-
         36 -    def __init__(self, owner, name=None, handle=None, shape=None): 
-
         37          '''constructor''' 
- 38          DataRefinement.__init__(self, owner, name, handle, shape) 
- 39           
- 40          return 
-
         41       
-
         42 -    def addParamToStrategy(self, datapath, step = None): 
-
         43          '''Add a parameter to strategy. The included parameters will be turned on 
- 44          in the refinement. 
- 45           
- 46          @type datapath:    string 
- 47          @param datapath:    the dataset signature path to be added to the strategy 
- 48          @type step:    integer 
- 49          @param step:    the step of the strategy to which the parameter will be added  
- 50                      - None, the parameter will be added to all steps 
- 51                      - step >= total number of existing steps, a new step will be  
- 52                          added to the strategy list. The new step includes the  
- 53                          new parameter, and all previously included parameters 
- 54                      - 0 <= step < total number of existing steps, the new parameter  
- 55                          will be added to the step 
- 56          @return: no return value 
- 57                      ''' 
- 58           
- 59          # NOTE: the menu list is the same in one step strategy style 
- 60          paramPaths = self.getParamListForStrategy(datapath) 
- 61           
- 62          for paramPath in paramPaths: 
- 63              strategy = StrategyFile(self, strategy = self.strategy) 
- 64              stepid = strategy.getNumStep() 
- 65               
- 66              value = "" 
- 67              formula = "1.0*Var_" + str(strategy.getNewVariableId()) 
- 68              if step >= self.numStrategySteps: # add one more step if the step number is 1 more to the max step id 
- 69                  lastparamlist = strategy.getStepParamList(stepid) 
- 70                  currparamlist = strategy.mergeParamList( 
- 71                                      [paramPath, value, formula], lastparamlist) 
- 72                  method = strategy.getStepMethod(stepid) 
- 73                  strategy.addNewStep(stepid, method, currparamlist) 
- 74              elif step is None: # if step is None, add to all steps 
- 75                  for step in range(stepid): 
- 76                      if not self.isParamTurnedOn(paramPath, step): 
- 77                          strategy.addParam(step + 1, 0, paramPath, value, formula) 
- 78               
- 79              else: # add to a specific step 
- 80                  assert(step < stepid and step >= 0) 
- 81                  if not self.isParamTurnedOn(paramPath, step): 
- 82                      strategy.addParam(step + 1, 0, paramPath, value, formula) 
- 83               
- 84          self.setStrategy(strategy.strategy) 
- 85           
- 86          return 
-
         87         
-
         88 -    def dumpDataFile(self, directory, index, bankid = 0): 
-
         89          '''Dump the datafile for refinement in index 
- 90           
- 91          @type directory:    directory path string 
- 92          @param directory:    the directory where the data files will be saved 
- 93          @type index:    integer or tuple 
- 94          @param index:    the index of the single refinement 
- 95          @type bankid:    integer 
- 96          @param bankid:    the bank id of the pattern to look for 
- 97          @return:    the list of data file path saved, listed same as the bank number 
- 98                      if the file is not found or not set, the item is None 
- 99          ''' 
-100          rv = None 
-101          # dump files in patterns 
-102          pt = self.getObject('Pattern')[bankid] 
-103          ds = pt.get('Datafile') 
-104          rv = self.dumpFileFromDataset(directory, ds, index) 
-105           
-106          # if not found in the relative path and absolute path dataset,  
-107          # try to convert it from the  
-108          if not rv: 
-109              absds = pt.get('Datafile_abspath') 
-110              abspath = str(absds[index]) 
-111              basename = os.path.basename(abspath) 
-112              rootname, ext = os.path.splitext(basename) 
-113   
-114              df = self.getDataFileFromPattern(index, bankid, rootname = rootname) 
-115               
-116              if df: 
-117                  # change the extension to .dat, since the converted file will be 
-118                  # a two/three column file 
-119                  basename = rootname + '.dat' 
-120                  newpath = os.path.join(directory, basename) 
-121                  df.write(newpath) 
-122                  rv = newpath 
-123               
-124          return rv 
-
        125       
-
        126 -    def dumpEngineFile(self, directory, index, basename = None): 
-
        127          '''dump the engine file to the directory 
-128           
-129          @type directory: directory path string 
-130          @param directory:    the directory where the file will be saved 
-131          @type index:    integer or tuple 
-132          @param index:    the data index of the engine file 
-133          @type basename:    string 
-134          @param basename:    the file name of the engine file 
-135          @return:    the path of the engine file''' 
-136           
-137          ds = self.get('enginefile') 
-138          if not basename: 
-139              basename = self.name + '.' +self.getEngineFileExt() 
-140           
-141          newpath = os.path.join(directory, basename) 
-142           
-143          with open(newpath, 'w') as f: 
-144              f.write( str(ds[index]) ) 
-145           
-146          return 
-
        147       
-
        148 -    def dumpFiles(self, directory, index): 
-
        149          '''Dump the files for refinement, including all the files needed to  
-150          run the refinement (datafile, instrument file, incident spectrum file, engine file) 
-151           
-152          @type directory:    directory path string 
-153          @param directory:    the directory where the files will be saved 
-154          @type index:    integer or tuple 
-155          @param index:    the index of the refinement to dump 
-156          @return:    no return value 
-157          ''' 
-158          assert(os.path.isdir(directory)) 
-159           
-160          # dump pattern files 
-161          patterns = self.getObject("Pattern") 
-162          for pt in patterns: 
-163              for param in ['Datafile', 'MFIL', 'Instrumentfile']: 
-164                  ds = pt.get(param) 
-165                   
-166                  # FullProf fit object does not have the MFIL data 
-167                  if ds: 
-168                      # try to find file from the 1) relative path; 2) absolute path 
-169                      # 3) if the datafile, try to pull the data file from the pattern 
-170                      relpath = str(ds[index]) 
-171                      abspath = os.path.join(self.owner.basepath, relpath) 
-172                      basename = os.path.basename(relpath) 
-173                      newFilePath = os.path.join(directory, basename)  
-174                       
-175                      if os.path.isfile(abspath): 
-176                          shutil.copy(abspath, newFilePath) 
-177                          __msg = 'The relative path of file (%s) is not valid, %s \n.' + \ 
-178                              'Trying to use the absolute path saved in the project...' % (param, abspath) 
-179                               
-180                          absds = pt.get(param + '_abspath') 
-181                          if absds: 
-182                              abspath = str(absds[index]) 
-183                               
-184                  else: 
-185                      __msg = 'The file (%s) in %s does not exist.' % (param, abspath) 
-186                      printWarning(__msg) 
-187           
-188          # export the engine file 
-189          ds = self.get('enginefile') 
-190          if not ds: 
-191              __msg = 'The engine file is not saved in the project' 
-192              printWarning(__msg) 
-193          else: 
-194              engText = str(ds[index]) 
-195              basename = self.name + '.' + self.getEngineFileExt() 
-196              filename = os.path.join(directory, basename) 
-197              with open(filename, 'w') as f: 
-198                  f.write(filename) 
-199                   
-200          return 
-
        201   
-
        202 -    def dumpFileFromDataset(self, directory, ds, index, basename = None): 
-
        203          '''dump the files in pattern objects, such as Datafile, MFIL, and  
-204          Instrumentfile 
-205           
-206          @type directory:    directory path string 
-207          @param directory - the directory where the file will be saved 
-208          @type ds:    a Dataset object 
-209          @param ds:    the dataset stores the file path information 
-210          @type index:    integer or tuple 
-211          @param index - the index in the dataset 
-212          @type basename:    string 
-213          @param basename:    if defined, will be used as the file name 
-214          @return - the paths of the dumped new file 
-215          ''' 
-216           
-217          filepath = self.findFileFromDataset(ds, index) 
-218           
-219          rv = None 
-220           
-221          if filepath: 
-222              basename = os.path.basename(filepath) if basename is None else basename 
-223              newpath = os.path.join(directory, basename) 
-224              shutil.copy(filepath, newpath) 
-225              rv = newpath 
-226          else: 
-227              dname = ds.name 
-228              __msg = 'The file (%s) is not found.' %(dname) 
-229              printWarning(__msg) 
-230           
-231          return rv 
-
        232   
-
        233 -    def dumpIncidentSpectrumFile(self, directory, index = 0, bankid = 0): 
-
        234          '''Dump the incident spectrum file (MFIL, only in EXP files for GSAS)  
-235           
-236          @type directory:    directory path string 
-237          @param directory: the directory where the file will be saved    
-238          @type index:    integer or tuple 
-239          @param index:    the index of the dataset 
-240          @type bankid:    integer 
-241          @param bankid:    the bank id of the pattern to look for 
-242          @return:    the new path of the saved file''' 
-243          rv = None 
-244           
-245          pt = self.getObject('Pattern')[bankid] 
-246          ds = pt.get('MFIL') 
-247          rv = self.dumpFileFromDataset(directory, ds, index) 
-248           
-249          return rv 
-
        250   
-
        251 -    def dumpInstrumentFile(self, directory, index = 0, bankid = 0): 
-
        252          '''Dump the instrument file into a folder. Usually the instrument files 
-253          are the same for all data set. 
-254           
-255          @type directory:    directory path string 
-256          @param directory:    the directory where the file will be moved to 
-257          @type index:    integer or tuple 
-258          @param index:    the index of the dataset, default to be the first in the list 
-259          @type bankid:    integer 
-260          @param bankid:    the bank id of the pattern to look for 
-261          @return:    the new path of the instrument file''' 
-262           
-263          rv = None 
-264           
-265          pt = self.getObject('Pattern')[bankid] 
-266          ds = pt.get('Instrumentfile') 
-267          rv = self.dumpFileFromDataset(directory, ds, index) 
-268       
-269          return rv 
-
        270           
-
        271 -    def findFileFromDataset(self, ds, index): 
-
        272          '''Try to find the file from the information in the dataset 
-273           
-274          @type ds:    a Dataset object 
-275          @param ds:    the dataset which stores the file path information 
-276          @type index:    integer or tuple 
-277          @param index:    the index in the dataset 
-278          @return:    the file absolute path if the file is found, None otherwise''' 
-279           
-280          dname = ds.name 
-281           
-282          relpath = str(ds[index]) 
-283          abspath = os.path.abspath(os.path.join(self.owner.basepath, relpath)) 
-284          filepath = None 
-285          if os.path.isfile(abspath): 
-286              filepath = abspath 
-287          else: 
-288              # try the _abspath 
-289              absds = ds.owner.get(dname + '_abspath') 
-290              if absds: 
-291                  abspath = str(absds[index]) 
-292                  if os.path.isfile(abspath): 
-293                      filepath = abspath 
-294           
-295          # update the filepath in case either the relative path and absolute path  
-296          # is not valid 
-297          if filepath: 
-298              self.saveFilePathToDataset(filepath, ds, index) 
-299           
-300          return filepath         
-
        301   
-
        302 -    def getChi2(self): 
-
        303          ''' 
-304          Get the chi square values of the refinement 
-305           
-306          @return: the chi square values of the refinement 
-307          ''' 
-308          return self.getByPath(PARAMNAMES[self.getEngineType()]['chi2']) 
-
        309   
-
        310 -    def getDataFileFromPattern(self, index, bankid = 0, rootname = None): 
-
        311          '''Get a data file object from the numpy array saved in Pattern 
-312           
-313          @type index:    integer or tuple 
-314          @param index:    the index of the single refinement 
-315          @type bankid:    integer 
-316          @param bankid:    the bank id of the pattern to look for 
-317          @type rootname:    string 
-318          @param rootname:    the rootname of the data file, which is the file name 
-319                              without the extension 
-320          @return:    a Datafile object 
-321          ''' 
-322          df = None 
-323          pt = self.getObject("Pattern")[bankid] 
-324          dsx = pt.get('xobs') 
-325          dsy = pt.get('yobs') 
-326          if dsx is not None and dsy is not None: 
-327              xobs = dsx[index] 
-328              yobs = dsy[index] 
-329               
-330              if not rootname: 
-331                  rootname = "%s_idx%s_bid%s" %(self.name, index, bankid) 
-332               
-333              df = DataFile(xobs = xobs,  
-334                            yobs = yobs,  
-335                            rootname = rootname) 
-336           
-337          return df 
-
        338       
-
        339 -    def getEngineFileExt(self): 
-
        340          '''get the extension name of the engine file for this fit 
-341           
-342          @return:    string of file extension, for example "EXP" or "pcr"''' 
-343          engType = self.getEngineType() 
-344           
-345          rv = None 
-346          if engType.lower() == 'gsas': 
-347              rv = 'EXP' 
-348          elif engType.lower() == 'fullprof': 
-349              rv = 'pcr' 
-350           
-351          return rv 
-
        352   
-
        353 -    def getEngineType(self): 
-
        354          '''Get the engine type for this refinement 
-355           
-356          @return:    the string of the engine type, for example I{"gsas"} or I{"fullprof"}''' 
-357           
-358          if self.getAttr('rietveldcls').count('gsas') > 0: 
-359              engineName = 'gsas' 
-360          elif self.getAttr('rietveldcls').count('fullprof') > 0: 
-361              engineName = 'fullprof' 
-362           
-363          return engineName 
-
        364           
-
        365 -    def getInvolvedDatapaths(self, step = None): 
-
        366          '''Get the refined parameters. The datasets ever included in the strategy list  
-367          will be listed. The order of the datasets when they turned on is ignored 
-368           
-369          @type step:    integer 
-370          @param step:    the strategy step, if step is a valid integer, then get  
-371                          the datasets in that step; if none, get all the datasets  
-372                          in all steps 
-373          @return: the a list of Dataset objects 
-374          ''' 
-375          datapaths = [] 
-376           
-377          if step is None: 
-378              strategyStep = self.getOneStepStrategy()[0] 
-379          else: 
-380              if step < 0 or step >= len(self.strategy): 
-381                  return [] 
-382              strategyStep = self.strategy[step] 
-383               
-384          type = strategyStep.keys()[0] 
-385          for param in strategyStep[type]: 
-386              datapaths.append(param[0]) 
-387           
-388          return datapaths 
-
        389       
-
        390 -    def getName(self): 
-
        391          ''' 
-392          Get the name of the refinement 
-393           
-394          @return: the refinement name 
-395          ''' 
-396          return self.name 
-
        397       
-
        398 -    def getNumOfCycles(self): 
-
        399          ''' 
-400          Get the number of cycles of the refinement 
-401           
-402          @return: the chi square values of the refinement 
-403          ''' 
-404          return self.getByPath(PARAMNAMES[self.getEngineType()]['ncycle']) 
-
        405       
-
        406 -    def getNumOfPhases(self): 
-
        407          '''Get number of phases in the refinement 
-408           
-409          @return: number of phases 
-410          ''' 
-411          return len(self.listPhases()) 
-
        412   
-
        413 -    def getNumOfPatterns(self): 
-
        414          ''' 
-415          Get the number of patterns in the refinement 
-416           
-417          @return: number of patterns 
-418          ''' 
-419          return len(self.listPatterns()) 
-
        420           
-
        421 -    def getOneStepStrategy(self, type = "Rietveld"): 
-
        422          '''Combine the strategy steps into one step, so the refinement can run  
-423          this strategy step and skep running through the steps 
-424           
-425          @type type:    string 
-426          @param type:    the type of the refinement, default to be Rietveld.  
-427                          Possible value can be "Rietveld" or "LeBail" 
-428          @return: the one step strategy list 
-429          ''' 
-430       
-431          allInOneStep = [] 
-432          strategy = copy.deepcopy(self.strategy) 
-433          # delete the duplicate elements, list is unhashable type 
-434          for step in strategy: 
-435              allInOneStep.extend(step.values()[0]) 
-436               
-437          if allInOneStep: 
-438              allInOneStep.sort() 
-439              last = allInOneStep[-1] 
-440              for i in range(len(allInOneStep)-2, -1, -1): 
-441                  if last == allInOneStep[i]: 
-442                      del allInOneStep[i] 
-443                  else: 
-444                      last = allInOneStep[i] 
-445          step = {} 
-446          #allInOneStep.extend(self.__oneStepStrategyParamList) 
-447          step[type] = allInOneStep 
-448          return [step] 
-
        449   
-
        450 -    def getParamListForStrategy(self, datapath): 
-
        451          '''Handling different mechanisms for different engines. For example,  
-452          for gsas, some parameters such as all background parameters have to be  
-453          added or removed all together. Also the lattice parameters have to be  
-454          combined in GSAS as well. 
-455           
-456          @type datapath:    string 
-457          @param datapath:   the data path, which denotes the ownership tree of a  
-458                              dataset. It reads as Pattern[0].Back[0], Phase[0].Atom[1].x,  
-459                              or Phase[0].a  
-460          @return:    a list of paths of the parameter data object that should be  
-461                      combined with the passed in datapath''' 
-462          rv = [] 
-463          if self.getEngineType() == 'gsas': 
-464              # if the parameter is one of the lattice parameter, then turn on all 
-465              # the parameters.  
-466               
-467              latticeParams = ['a', 'b', 'c', 'alpha', 'beta', 'gamma'] 
-468              suffix = datapath.split('.')[-1] 
-469              if suffix in latticeParams: 
-470                  __msg = "In GSAS engine, the lattice parameters have to be flagged/" + \ 
-471                  "unflagged together. This operation will be applied to other lattice" + \ 
-472                  "parameters as well. " 
-473                  print __msg 
-474                  for param in latticeParams: 
-475                      rv.append('.'.join([datapath.rsplit('.', 1)[0], param])) 
-476   
-477              # Check if the dataset has extra index 
-478              if datapath.endswith(']'): 
-479                  __msg = "In GSAS engine, the background parameters have to be " + \ 
-480                  "flagged/unflagged together. This operation will be applied to " + \ 
-481                  "other background parameters as well. " 
-482                  print __msg 
-483                  datapath = datapath.rsplit('[', 1)[0] 
-484                  paramPath = datapath.split('.', 1)[-1] 
-485                  ds = self.getByPath(paramPath) 
-486                  #FIXME : suppose there is only one extra index, actually,  
-487                  # it's not foreseeable that there will be more that one 
-488                  extrasize = ds.shape[-1] 
-489                  for extraidx in range(extrasize): 
-490                      rv.append(datapath + "[%i]" % extraidx) 
-491                   
-492          else: # fullprof does not have combinatiosn 
-493              rv = [datapath] 
-494           
-495          return rv 
-
        496       
-
        497 -    def getPhaseByName(self, name): 
-
        498          ''' 
-499          Get the phase object by its name 
-500           
-501          @type name: string 
-502          @param name:    the phase name to obtain 
-503           
-504          @return:    the phase object with the name if exists. None if no such  
-505                      phase object. The program will emit a warning if duplicate  
-506                      phase names exist, and the first phase obj with the same name 
-507                      will be returned 
-508          ''' 
-509          rv = [None] 
-510          rv = [obj for obj in self.listPhases() if obj.getName() == name] 
-511          if len(rv) > 1: 
-512              __msg = 'Duplicate phase names, the first refinement is returned' 
-513              UTILS.printWarning(__msg) 
-514               
-515          return rv[0] 
-
        516           
-
        517 -    def isParamTurnedOn(self, datapath,step = None): 
-
        518          '''check if the dataset is included in the strategy 
-519           
-520          @type datapath:    string 
-521          @param datapath:    the signature path string of the data. For ordinary  
-522                          data, just dataset.path for data with extra index,  
-523                          its dataset.path + '[%i]' % extraindex 
-524          @type step:    integer 
-525          @param step:    the strategy step to be investigate. If None, return True if the 
-526                          dataset is included in any step 
-527          @return:    True if the dataset is included, False otherwise''' 
-528          rv = False 
-529          if step is not None: 
-530              sf = StrategyFile(self, strategy = self.strategy) 
-531              paramList = sf.getStepParamList(step + 1) 
-532              for param in paramList: 
-533                  if datapath == param[0]: 
-534                      rv = True 
-535                      break 
-536           
-537          else: 
-538              for step in range(len(self.strategy)): 
-539                  if self.isParamTurnedOn(datapath, step): 
-540                      rv = True 
-541                      break 
-542                   
-543              return rv 
-
        544           
-
        545 -    def listEnvParams(self): 
-
        546          ''' 
-547          List the environment parameter objects on which the refinements are organized.  
-548          For example, the temperature or pressure series 
-549           
-550          @return: a list of environment parameter objects 
-551          ''' 
-552          rv = [] 
-553          for name in self.labels: 
-554              rv.append(self.get(name)) 
-555          return rv 
-
        556       
-
        557 -    def listEnvParamNames(self): 
-
        558          ''' 
-559          List the environment parameter names on which the refinements are organized.  
-560          For example, the temperature or pressure series 
-561           
-562          @return: the environment parameter names 
-563          ''' 
-564          return self.labels 
-
        565       
-
        566 -    def listPatterns(self): 
-
        567          ''' 
-568          List the Pattern objects in the refinement 
-569           
-570          @return:    a list of patterns 
-571          ''' 
-572          return self.listObjects(Pattern, recursively = True) 
-
        573       
-
        574 -    def listPhases(self): 
-
        575          ''' 
-576          List the Phase objects in the refinement 
-577           
-578          @return:    a list of phases 
-579          ''' 
-580          return self.listObjects(Phase, recursively = True) 
-
        581       
-
        582 -    def listPhaseNames(self): 
-
        583          ''' 
-584          Return a list of phase names in the refinement 
-585           
-586          @return: a list of phase names 
-587          ''' 
-588          return [obj.get('Name').first() for obj in self.listPhases()] 
-
        589       
-
        590 -    def listProfiles(self): 
-
        591          ''' 
-592          Get a list of Profile objects in the refinement 
-593           
-594          @return: a list of Profile objects 
-595          ''' 
-596          return self.listObjects(Profile, recursively = True) 
-
        597       
-
        598 -    def loadDataFile(self, datafile, index = 0, bankid = 0): 
-
        599          '''load the data file to the project 
-600           
-601          @type datafile:    file path string 
-602          @param datafile:    the data file absolute path 
-603          @type index:    integer or tuple 
-604          @param index:    the index of the single refinement 
-605          @type bankid:    integer 
-606          @param bankid:    the bank id of the pattern, default to be 0 
-607          @return:    no return value 
-608          ''' 
-609           
-610          patterns = self.getObject("Pattern") 
-611          pattern = patterns[bankid] 
-612          ds = pattern.get('Datafile') 
-613           
-614          self.saveFilePathToDataset(datafile, ds, index) 
-615   
-616          #TODO: save the xobs / yobs data into the pattern 
-617          return 
-
        618       
-
        619 -    def loadIncidentSpectrumFile(self, mfil, index = 0, bankid = 0): 
-
        620          '''Load the incident spectrum file path into the object 
-621           
-622          @type mfil:    file path string  
-623          @param mfil:    the abs path of the incident spectrum file MFIL 
-624          @param index:    integer or tuple 
-625          @type index:    the index of the single refinement 
-626          @type bankid:    integers 
-627          @param bankid:    the bank id of the pattern 
-628          @return:    no return value 
-629          ''' 
-630          patterns = self.getObject("Pattern") 
-631          pattern = patterns[bankid] 
-632          ds = pattern.get('MFIL') 
-633           
-634          self.saveFilePathToDataset(mfil, ds, index) 
-635          return 
-
        636       
-
        637 -    def loadInstrumentFile(self, instrumentfile, index = 0, bankid = 0): 
-
        638          '''load the instrument file path to the pattern 
-639          instrumentfile - the abs path to the instrument file 
-640           
-641          @type index:    integer or tuple 
-642          @param index:    the index of the single refinement 
-643          @type bankid:    integer or tuple 
-644          @param bankid:    the bankid of the pattern 
-645          @return:    no return value 
-646          ''' 
-647          patterns = self.getObject("Pattern") 
-648          pattern = patterns[bankid] 
-649          ds = pattern.get('Instrumentfile') 
-650           
-651          self.saveFilePathToDataset(instrumentfile, ds, index) 
-652           
-653          return 
-
        654   
-
        655 -    def loadStrategyFile(self, fullpath): 
-
        656          '''load the strategy from a text file 
-657           
-658          @type fullpath:    file path string 
-659          @param fullpath:    the stratey file path 
-660          @return:    no return value 
-661          ''' 
-662          st = StrategyFile(self, fullpath) 
-663          self.setStrategy(st.strategy) 
-664          return 
-
        665   
-666      @property 
-
        667 -    def numStrategySteps(self): 
-
        668          '''Get the number of strategy steps 
-669           
-670          @return: the total number of strategy''' 
-671          return len(self.strategy) 
-
        672   
-
        673 -    def removeParamFromStrategy(self, datapath, step = None): 
-
        674          '''remove parameter from the strategy 
-675           
-676          @type datapath:    string 
-677          @param datapath:    the data signature path to be removed from the strategy 
-678          @type step:    integer 
-679          @param step:    the strategy step.  
-680                          - None, will remove the strategy from all steps 
-681                          - 0 <= step < total number of existing steps, the new  
-682                              parameter will be removed from the step 
-683          @return:    no return value 
-684          ''' 
-685          datapaths = self.getParamListForStrategy(datapath) 
-686           
-687          for datapath in datapaths: 
-688              strategyList = self.strategy 
-689              if step is not None: 
-690                  if step > len(strategyList) and step < 0:   
-691                      print "Step number (%s) is out of strategy list boundary (0 - %s)" % (step, len(strategyList)) 
-692                      return 
-693                  else:  
-694                      sf = StrategyFile(self,strategy = self.strategy) 
-695                      paramList = sf.getStepParamList(step + 1) 
-696                      for idx, param in enumerate(paramList): 
-697                          if datapath == param[0]: 
-698                              paramList.pop(idx) 
-699                               
-700                      type = sf.getStepMethod(step) 
-701                       
-702                      strategyList[step][type] = paramList 
-703                      self.setStrategy(strategyList) 
-704                       
-705              else:# step is none, remove all occurences of this parameter in steps 
-706                  for ss in range(len(strategyList)): 
-707                      self.removeParamFromStrategy(datapath, ss) 
-708                       
-709          return 
-
        710    
-
        711 -    def saveEngineFile(self, enginefile, index = 0): 
-
        712          '''Save the engine file content to the datasets 
-713          @type enginefile:    filepath string 
-714          @param enginefile: the engine file path 
-715          @type index:    integer or tuple 
-716          @param index:    the index of the single refinement 
-717          @return:    no return value 
-718          ''' 
-719          ds = self.get('enginefile') 
-720          if ds is None: 
-721              self.set('enginefile', open(enginefile, 'rb').read(),  
-722                       repeat = True, grow = True) 
-723          else: 
-724              ds[index] = open(enginefile, 'rb').read() 
-725           
-726          return 
-
        727       
-
        728 -    def saveFilePathToDataset(self, absPath, ds, index = 0, basepath = None): 
-
        729          '''Save the absolute file path to the dataset 
-730           
-731          @type ds:    Dataset object 
-732          @param ds:    the dataset to store the file path information 
-733          @type index:    integer or tuple 
-734          @param index:    the index of the dataset 
-735          @type absPath:    file path string 
-736          @param absPath:    the absolute path of the data file 
-737          @type basepath:    directory path string 
-738          @param basepath:    the basepath used to determine the relative path,   
-739                          the project.basepath will be used if basepath None 
-740          @return: no return value 
-741          ''' 
-742          dname = ds.name 
-743          parent = ds.owner 
-744          if absPath: 
-745              if basepath is None: basepath = self.owner.basepath 
-746              relpath = os.path.relpath(absPath, basepath) 
-747          else: 
-748              relpath = "" 
-749               
-750          ds[index] = relpath 
-751           
-752          ds = parent.get(dname + '_abspath') 
-753          if ds is None: 
-754              parent.set(dname + '_abspath', absPath, repeat = True, grow = True) 
-755          else: 
-756              ds[index] = absPath 
-757               
-758          return 
-
        759   
-
        760 -    def setStrategy(self, strategylist): 
-
        761          ''' 
-762          Set the strategy to refinement object 
-763           
-764          @type strategylist:    list 
-765          @param strategylist:    a list with strategy steps 
-766          @return:    no return value 
-767          ''' 
-768          self.setPyObj('Strategy', strategylist) 
-769          return 
-
        770   
-771      @property 
-
        772 -    def strategy(self): 
-
        773          '''Get the strategy list from the fit object 
-774           
-775          @return:    the strategy list 
-776          ''' 
-777          strategylist = self.getPyObj("Strategy") 
-778          return strategylist 
-
        779   
-
        780 -    def writeStrateyFile(self, fullpath): 
-
        781          '''write the strategy to a local file 
-782           
-783          @type fullpath:    file path string 
-784          @param fullpath:    the file path to write to 
-785          @return:    no return value 
-786          ''' 
-787          st = StrategyFile(self, strategy = self.strategy) 
-788          st.writeToFile(fullpath) 
-789          return 
-
        790       
-791  # end class refinement 
-792  #------------------------------------------------------------------------------- 
-793  ################################################################################ 
-794   
-
        -
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        - -

        Class Refinement

        source code

        -
        -                       object --+            
-                                |            
-refinementdata.hdf5.object.Object --+        
-                                    |        
-   refinementdata.refinable.Refinable --+    
-                                        |    
-     refinementdata.refinement.Refinement --+
-                                            |
-                                           Refinement
-
        - -
        -

        The refinement (fit) class for SrRietveld. A refinement object - contains information for a series of single refinement. It contains the - subobjects such as the Pattern, Profile, and Contribution.

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - owner, - name=None, - handle=None, - shape=None)
        - constructor        		 - source code - -
        - -
        -   - - - - - - -
        addParamToStrategy(self, - datapath, - step=None)
        - Add a parameter to strategy.        		 - source code - -
        - -
        -   - - - - - - -
        dumpDataFile(self, - directory, - index, - bankid=0)
        - Dump the datafile for refinement in index        		 - source code - -
        - -
        -   - - - - - - -
        dumpEngineFile(self, - directory, - index, - basename=None)
        - dump the engine file to the directory        		 - source code - -
        - -
        -   - - - - - - -
        dumpFileFromDataset(self, - directory, - ds, - index, - basename=None)
        - dump the files in pattern objects, such as Datafile, MFIL, and - Instrumentfile        		 - source code - -
        - -
        -   - - - - - - -
        dumpFiles(self, - directory, - index)
        - Dump the files for refinement, including all the files needed to run - the refinement (datafile, instrument file, incident spectrum file, - engine file)        		 - source code - -
        - -
        -   - - - - - - -
        dumpIncidentSpectrumFile(self, - directory, - index=0, - bankid=0)
        - Dump the incident spectrum file (MFIL, only in EXP files for GSAS)        		 - source code - -
        - -
        -   - - - - - - -
        dumpInstrumentFile(self, - directory, - index=0, - bankid=0)
        - Dump the instrument file into a folder.        		 - source code - -
        - -
        -   - - - - - - -
        findFileFromDataset(self, - ds, - index)
        - Try to find the file from the information in the dataset        		 - source code - -
        - -
        -   - - - - - - -
        getChi2(self)
        - Get the chi square values of the refinement        		 - source code - -
        - -
        -   - - - - - - -
        getDataFileFromPattern(self, - index, - bankid=0, - rootname=None)
        - Get a data file object from the numpy array saved in Pattern        		 - source code - -
        - -
        -   - - - - - - -
        getEngineFileExt(self)
        - get the extension name of the engine file for this fit        		 - source code - -
        - -
        -   - - - - - - -
        getEngineType(self)
        - Get the engine type for this refinement        		 - source code - -
        - -
        -   - - - - - - -
        getInvolvedDatapaths(self, - step=None)
        - Get the refined parameters.        		 - source code - -
        - -
        -   - - - - - - -
        getName(self)
        - Get the name of the refinement        		 - source code - -
        - -
        -   - - - - - - -
        getNumOfCycles(self)
        - Get the number of cycles of the refinement        		 - source code - -
        - -
        -   - - - - - - -
        getNumOfPatterns(self)
        - Get the number of patterns in the refinement        		 - source code - -
        - -
        -   - - - - - - -
        getNumOfPhases(self)
        - Get number of phases in the refinement        		 - source code - -
        - -
        -   - - - - - - -
        getOneStepStrategy(self, - type='Rietveld')
        - Combine the strategy steps into one step, so the refinement can run - this strategy step and skep running through the steps        		 - source code - -
        - -
        -   - - - - - - -
        getParamListForStrategy(self, - datapath)
        - Handling different mechanisms for different engines.        		 - source code - -
        - -
        -   - - - - - - -
        getPhaseByName(self, - name)
        - Get the phase object by its name        		 - source code - -
        - -
        -   - - - - - - -
        isParamTurnedOn(self, - datapath, - step=None)
        - check if the dataset is included in the strategy        		 - source code - -
        - -
        -   - - - - - - -
        listEnvParamNames(self)
        - List the environment parameter names on which the refinements are - organized.        		 - source code - -
        - -
        -   - - - - - - -
        listEnvParams(self)
        - List the environment parameter objects on which the refinements are - organized.        		 - source code - -
        - -
        -   - - - - - - -
        listPatterns(self)
        - List the Pattern objects in the refinement        		 - source code - -
        - -
        -   - - - - - - -
        listPhaseNames(self)
        - Return a list of phase names in the refinement        		 - source code - -
        - -
        -   - - - - - - -
        listPhases(self)
        - List the Phase objects in the refinement        		 - source code - -
        - -
        -   - - - - - - -
        listProfiles(self)
        - Get a list of Profile objects in the refinement        		 - source code - -
        - -
        -   - - - - - - -
        loadDataFile(self, - datafile, - index=0, - bankid=0)
        - load the data file to the project        		 - source code - -
        - -
        -   - - - - - - -
        loadIncidentSpectrumFile(self, - mfil, - index=0, - bankid=0)
        - Load the incident spectrum file path into the object        		 - source code - -
        - -
        -   - - - - - - -
        loadInstrumentFile(self, - instrumentfile, - index=0, - bankid=0)
        - load the instrument file path to the pattern instrumentfile - the abs - path to the instrument file        		 - source code - -
        - -
        -   - - - - - - -
        loadStrategyFile(self, - fullpath)
        - load the strategy from a text file        		 - source code - -
        - -
        -   - - - - - - -
        removeParamFromStrategy(self, - datapath, - step=None)
        - remove parameter from the strategy        		 - source code - -
        - -
        -   - - - - - - -
        saveEngineFile(self, - enginefile, - index=0)
        - Save the engine file content to the datasets        		 - source code - -
        - -
        -   - - - - - - -
        saveFilePathToDataset(self, - absPath, - ds, - index=0, - basepath=None)
        - Save the absolute file path to the dataset        		 - source code - -
        - -
        -   - - - - - - -
        setStrategy(self, - strategylist)
        - Set the strategy to refinement object        		 - source code - -
        - -
        -   - - - - - - -
        writeStrateyFile(self, - fullpath)
        - write the strategy to a local file        		 - source code - -
        - -
        -

        Inherited from refinementdata.refinement.Refinement: - addPattern, - addStructure, - checkStatus, - getStatus, - isFinished, - isRunning, - isSubmitted, - loadLocalData, - removePattern, - removeStructure, - resetStatus, - setStatus -

        -

        Inherited from refinementdata.refinable.Refinable: - addHistory, - addHistoryByPath, - addSigma, - addSigmaByPath, - findRefinement, - getHistory, - getHistoryByPath, - getSigma, - getSigmaByPath, - listHistories, - listRefined, - loadLocalObjects, - removeHistory, - update -

        -

        Inherited from refinementdata.hdf5.object.Object: - addObject, - copy, - copyMeta, - delete, - exportFile, - get, - getAttr, - getByPath, - getFlatIndex, - getMetaData, - getMultiDimIndex, - getObject, - getPyObj, - hasAttr, - hasMeta, - importFile, - isDescendant, - list, - listAttrs, - listNames, - listObjects, - load, - loadObject, - move, - range, - readStr, - removeObject, - rename, - repeat, - replicate, - reshape, - save, - set, - setAttr, - setByPath, - setLabels, - setPyObj, - unset, - unsetAttr, - writeStr -

        -

        Inherited from object: - __delattr__, - __format__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__, - __sizeof__, - __str__, - __subclasshook__ -

        -
        - - - - - - - - - -
        - Class Variables
        -

        Inherited from refinementdata.refinement.Refinement: - ERROR, - FINISHED, - NORMAL, - RUNNING, - SUBMITTED -

        -
        - - - - - - - - - - - - - - - -
        - Properties
        -   - - numStrategySteps
        - Get the number of strategy steps -
        -   - - strategy
        - Get the strategy list from the fit object -
        -

        Inherited from refinementdata.hdf5.object.Object: - labels, - name, - ndim, - path -

        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - Method Details
        - -
        - -
        - - -
        -

        __init__(self, - owner, - name=None, - handle=None, - shape=None) -
        (Constructor) -

        -         		source code  -
        - -

        constructor

        -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        addParamToStrategy(self, - datapath, - step=None) -

        -         		source code  -
        - -

        Add a parameter to strategy. The included parameters will be turned on - in the refinement.

        -
        -
        Parameters:
        -
          -
        • datapath (string) - the dataset signature path to be added to the strategy
          • -
        • step (integer) - the step of the strategy to which the parameter will be added -
            -
          • - None, the parameter will be added to all steps -
            • -
          • - step >= total number of existing steps, a new step will be - added to the strategy list. The new step includes the new - parameter, and all previously included parameters -
            • -
          • - 0 <= step < total number of existing steps, the new - parameter will be added to the step -
            • -
          • -
        -
        Returns:
        -
        no return value
        -
        -
        -
        - -
        - -
        - - -
        -

        dumpDataFile(self, - directory, - index, - bankid=0) -

        -         		source code  -
        - -

        Dump the datafile for refinement in index

        -
        -
        Parameters:
        -
          -
        • directory (directory path string) - the directory where the data files will be saved
          • -
        • index (integer or tuple) - the index of the single refinement
          • -
        • bankid (integer) - the bank id of the pattern to look for
          • -
        -
        Returns:
        -
        the list of data file path saved, listed same as the bank number - if the file is not found or not set, the item is None
        -
        -
        -
        - -
        - -
        - - -
        -

        dumpEngineFile(self, - directory, - index, - basename=None) -

        -         		source code  -
        - -

        dump the engine file to the directory

        -
        -
        Parameters:
        -
          -
        • directory (directory path string) - the directory where the file will be saved
          • -
        • index (integer or tuple) - the data index of the engine file
          • -
        • basename (string) - the file name of the engine file
          • -
        -
        Returns:
        -
        the path of the engine file
        -
        -
        -
        - -
        - -
        - - -
        -

        dumpFileFromDataset(self, - directory, - ds, - index, - basename=None) -

        -         		source code  -
        - -

        dump the files in pattern objects, such as Datafile, MFIL, and - Instrumentfile

        -
        -
        Parameters:
        -
          -
        • ds (a Dataset object) - the dataset stores the file path information
          • -
        • basename (string) - if defined, will be used as the file name @return - the paths of - the dumped new file
          • -
        • directory (directory path string @param directory - the directory where the - file will be saved)
          • -
        • index (integer or tuple @param index - the index in the dataset)
          • -
        -
        -
        -
        - -
        - -
        - - -
        -

        dumpFiles(self, - directory, - index) -

        -         		source code  -
        - -

        Dump the files for refinement, including all the files needed to run - the refinement (datafile, instrument file, incident spectrum file, engine - file)

        -
        -
        Parameters:
        -
          -
        • directory (directory path string) - the directory where the files will be saved
          • -
        • index (integer or tuple) - the index of the refinement to dump
          • -
        -
        Returns:
        -
        no return value
        -
        -
        -
        - -
        - -
        - - -
        -

        dumpIncidentSpectrumFile(self, - directory, - index=0, - bankid=0) -

        -         		source code  -
        - -

        Dump the incident spectrum file (MFIL, only in EXP files for GSAS)

        -
        -
        Parameters:
        -
          -
        • directory (directory path string) - the directory where the file will be saved
          • -
        • index (integer or tuple) - the index of the dataset
          • -
        • bankid (integer) - the bank id of the pattern to look for
          • -
        -
        Returns:
        -
        the new path of the saved file
        -
        -
        -
        - -
        - -
        - - -
        -

        dumpInstrumentFile(self, - directory, - index=0, - bankid=0) -

        -         		source code  -
        - -

        Dump the instrument file into a folder. Usually the instrument files - are the same for all data set.

        -
        -
        Parameters:
        -
          -
        • directory (directory path string) - the directory where the file will be moved to
          • -
        • index (integer or tuple) - the index of the dataset, default to be the first in the list
          • -
        • bankid (integer) - the bank id of the pattern to look for
          • -
        -
        Returns:
        -
        the new path of the instrument file
        -
        -
        -
        - -
        - -
        - - -
        -

        findFileFromDataset(self, - ds, - index) -

        -         		source code  -
        - -

        Try to find the file from the information in the dataset

        -
        -
        Parameters:
        -
          -
        • ds (a Dataset object) - the dataset which stores the file path information
          • -
        • index (integer or tuple) - the index in the dataset
          • -
        -
        Returns:
        -
        the file absolute path if the file is found, None otherwise
        -
        -
        -
        - -
        - -
        - - -
        -

        getChi2(self) -

        -         		source code  -
        - -

        Get the chi square values of the refinement

        -
        -
        Returns:
        -
        the chi square values of the refinement
        -
        -
        -
        - -
        - -
        - - -
        -

        getDataFileFromPattern(self, - index, - bankid=0, - rootname=None) -

        -         		source code  -
        - -

        Get a data file object from the numpy array saved in Pattern

        -
        -
        Parameters:
        -
          -
        • index (integer or tuple) - the index of the single refinement
          • -
        • bankid (integer) - the bank id of the pattern to look for
          • -
        • rootname (string) - the rootname of the data file, which is the file name without the - extension
          • -
        -
        Returns:
        -
        a Datafile object
        -
        -
        -
        - -
        - -
        - - -
        -

        getEngineFileExt(self) -

        -         		source code  -
        - -

        get the extension name of the engine file for this fit

        -
        -
        Returns:
        -
        string of file extension, for example "EXP" or - "pcr"
        -
        -
        -
        - -
        - -
        - - -
        -

        getEngineType(self) -

        -         		source code  -
        - -

        Get the engine type for this refinement

        -
        -
        Returns:
        -
        the string of the engine type, for example - "gsas" or "fullprof"
        -
        -
        -
        - -
        - -
        - - -
        -

        getInvolvedDatapaths(self, - step=None) -

        -         		source code  -
        - -

        Get the refined parameters. The datasets ever included in the strategy - list will be listed. The order of the datasets when they turned on is - ignored

        -
        -
        Parameters:
        -
          -
        • step (integer) - the strategy step, if step is a valid integer, then get the - datasets in that step; if none, get all the datasets in all steps
          • -
        -
        Returns:
        -
        the a list of Dataset objects
        -
        -
        -
        - -
        - -
        - - -
        -

        getName(self) -

        -         		source code  -
        - -

        Get the name of the refinement

        -
        -
        Returns:
        -
        the refinement name
        -
        -
        -
        - -
        - -
        - - -
        -

        getNumOfCycles(self) -

        -         		source code  -
        - -

        Get the number of cycles of the refinement

        -
        -
        Returns:
        -
        the chi square values of the refinement
        -
        -
        -
        - -
        - -
        - - -
        -

        getNumOfPatterns(self) -

        -         		source code  -
        - -

        Get the number of patterns in the refinement

        -
        -
        Returns:
        -
        number of patterns
        -
        -
        -
        - -
        - -
        - - -
        -

        getNumOfPhases(self) -

        -         		source code  -
        - -

        Get number of phases in the refinement

        -
        -
        Returns:
        -
        number of phases
        -
        -
        -
        - -
        - -
        - - -
        -

        getOneStepStrategy(self, - type='Rietveld') -

        -         		source code  -
        - -

        Combine the strategy steps into one step, so the refinement can run - this strategy step and skep running through the steps

        -
        -
        Parameters:
        -
          -
        • type (string) - the type of the refinement, default to be Rietveld. Possible - value can be "Rietveld" or "LeBail"
          • -
        -
        Returns:
        -
        the one step strategy list
        -
        -
        -
        - -
        - -
        - - -
        -

        getParamListForStrategy(self, - datapath) -

        -         		source code  -
        - -

        Handling different mechanisms for different engines. For example, for - gsas, some parameters such as all background parameters have to be added - or removed all together. Also the lattice parameters have to be combined - in GSAS as well.

        -
        -
        Parameters:
        -
          -
        • datapath (string) - the data path, which denotes the ownership tree of a dataset. It - reads as Pattern[0].Back[0], Phase[0].Atom[1].x, or Phase[0].a
          • -
        -
        Returns:
        -
        a list of paths of the parameter data object that should be - combined with the passed in datapath
        -
        -
        -
        - -
        - -
        - - -
        -

        getPhaseByName(self, - name) -

        -         		source code  -
        - -

        Get the phase object by its name

        -
        -
        Parameters:
        -
          -
        • name (string) - the phase name to obtain
          • -
        -
        Returns:
        -
        the phase object with the name if exists. None if no such phase - object. The program will emit a warning if duplicate phase names - exist, and the first phase obj with the same name will be - returned
        -
        -
        -
        - -
        - -
        - - -
        -

        isParamTurnedOn(self, - datapath, - step=None) -

        -         		source code  -
        - -

        check if the dataset is included in the strategy

        -
        -
        Parameters:
        -
          -
        • datapath (string) - the signature path string of the data. For ordinary data, just - dataset.path for data with extra index, its dataset.path + '[%i]' - % extraindex
          • -
        • step (integer) - the strategy step to be investigate. If None, return True if the - dataset is included in any step
          • -
        -
        Returns:
        -
        True if the dataset is included, False otherwise
        -
        -
        -
        - -
        - -
        - - -
        -

        listEnvParamNames(self) -

        -         		source code  -
        - -

        List the environment parameter names on which the refinements are - organized. For example, the temperature or pressure series

        -
        -
        Returns:
        -
        the environment parameter names
        -
        -
        -
        - -
        - -
        - - -
        -

        listEnvParams(self) -

        -         		source code  -
        - -

        List the environment parameter objects on which the refinements are - organized. For example, the temperature or pressure series

        -
        -
        Returns:
        -
        a list of environment parameter objects
        -
        -
        -
        - -
        - -
        - - -
        -

        listPatterns(self) -

        -         		source code  -
        - -

        List the Pattern objects in the refinement

        -
        -
        Returns:
        -
        a list of patterns
        -
        -
        -
        - -
        - -
        - - -
        -

        listPhaseNames(self) -

        -         		source code  -
        - -

        Return a list of phase names in the refinement

        -
        -
        Returns:
        -
        a list of phase names
        -
        -
        -
        - -
        - -
        - - -
        -

        listPhases(self) -

        -         		source code  -
        - -

        List the Phase objects in the refinement

        -
        -
        Returns:
        -
        a list of phases
        -
        -
        -
        - -
        - -
        - - -
        -

        listProfiles(self) -

        -         		source code  -
        - -

        Get a list of Profile objects in the refinement

        -
        -
        Returns:
        -
        a list of Profile objects
        -
        -
        -
        - -
        - -
        - - -
        -

        loadDataFile(self, - datafile, - index=0, - bankid=0) -

        -         		source code  -
        - -

        load the data file to the project

        -
        -
        Parameters:
        -
          -
        • datafile (file path string) - the data file absolute path
          • -
        • index (integer or tuple) - the index of the single refinement
          • -
        • bankid (integer) - the bank id of the pattern, default to be 0
          • -
        -
        Returns:
        -
        no return value
        -
        -
        -
        - -
        - -
        - - -
        -

        loadIncidentSpectrumFile(self, - mfil, - index=0, - bankid=0) -

        -         		source code  -
        - -

        Load the incident spectrum file path into the object

        -
        -
        Parameters:
        -
          -
        • mfil (file path string) - the abs path of the incident spectrum file MFIL
          • -
        • index (the index of the single refinement) - integer or tuple
          • -
        • bankid (integers) - the bank id of the pattern
          • -
        -
        Returns:
        -
        no return value
        -
        -
        -
        - -
        - -
        - - -
        -

        loadInstrumentFile(self, - instrumentfile, - index=0, - bankid=0) -

        -         		source code  -
        - -

        load the instrument file path to the pattern instrumentfile - the abs - path to the instrument file

        -
        -
        Parameters:
        -
          -
        • index (integer or tuple) - the index of the single refinement
          • -
        • bankid (integer or tuple) - the bankid of the pattern
          • -
        -
        Returns:
        -
        no return value
        -
        -
        -
        - -
        - -
        - - -
        -

        loadStrategyFile(self, - fullpath) -

        -         		source code  -
        - -

        load the strategy from a text file

        -
        -
        Parameters:
        -
          -
        • fullpath (file path string) - the stratey file path
          • -
        -
        Returns:
        -
        no return value
        -
        -
        -
        - -
        - -
        - - -
        -

        removeParamFromStrategy(self, - datapath, - step=None) -

        -         		source code  -
        - -

        remove parameter from the strategy

        -
        -
        Parameters:
        -
          -
        • datapath (string) - the data signature path to be removed from the strategy
          • -
        • step (integer) - the strategy step. -
            -
          • - None, will remove the strategy from all steps -
            • -
          • - 0 <= step < total number of existing steps, the new - parameter will be removed from the step -
            • -
          • -
        -
        Returns:
        -
        no return value
        -
        -
        -
        - -
        - -
        - - -
        -

        saveEngineFile(self, - enginefile, - index=0) -

        -         		source code  -
        - -

        Save the engine file content to the datasets

        -
        -
        Parameters:
        -
          -
        • enginefile (filepath string) - the engine file path
          • -
        • index (integer or tuple) - the index of the single refinement
          • -
        -
        Returns:
        -
        no return value
        -
        -
        -
        - -
        - -
        - - -
        -

        saveFilePathToDataset(self, - absPath, - ds, - index=0, - basepath=None) -

        -         		source code  -
        - -

        Save the absolute file path to the dataset

        -
        -
        Parameters:
        -
          -
        • ds (Dataset object) - the dataset to store the file path information
          • -
        • index (integer or tuple) - the index of the dataset
          • -
        • absPath (file path string) - the absolute path of the data file
          • -
        • basepath (directory path string) - the basepath used to determine the relative path, the - project.basepath will be used if basepath None
          • -
        -
        Returns:
        -
        no return value
        -
        -
        -
        - -
        - -
        - - -
        -

        setStrategy(self, - strategylist) -

        -         		source code  -
        - -

        Set the strategy to refinement object

        -
        -
        Parameters:
        -
          -
        • strategylist (list) - a list with strategy steps
          • -
        -
        Returns:
        -
        no return value
        -
        -
        -
        - -
        - -
        - - -
        -

        writeStrateyFile(self, - fullpath) -

        -         		source code  -
        - -

        write the strategy to a local file

        -
        -
        Parameters:
        -
          -
        • fullpath (file path string) - the file path to write to
          • -
        -
        Returns:
        -
        no return value
        -
        -
        -
        -
        - - - - - - -
        - Property Details
        - -
        - -
        -

        numStrategySteps

        -

        Get the number of strategy steps

        -
        -
        Get Method:
        -
        unreachable.numStrategySteps(self) - - Get the number of strategy steps -
        -
        -
        -
        - -
        - -
        -

        strategy

        -

        Get the strategy list from the fit object

        -
        -
        Get Method:
        -
        unreachable.strategy(self) - - Get the strategy list from the fit object -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
        - - - - - -
        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:58 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.utility-module.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.utility-module.html deleted file mode 100644 index 05638082..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.utility-module.html +++ /dev/null @@ -1,303 +0,0 @@ - - - - - diffpy.srrietveld.utility - - - - - - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module utility - - - - - -
        [frames] | no frames]
        -
        - -

        Module utility

        source code

        -

        Common shared functions that do not fit anywhere else.

        - - - - - - - - - - - - - - - - -
        - Classes
        -   - - UTF8Recoder
        - Iterator that reads an encoded stream and reencodes the input to - UTF-8 -
        -   - - UnicodeReader
        - A CSV reader which will iterate over lines in the CSV file - "f", which is encoded in the given encoding. -
        -   - - UnicodeWriter
        - A CSV writer which will write rows to CSV file "f", which - is encoded in the given encoding. -
        - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - Functions
        -   - - - - - - -
        checkFormat(filename)
        - Check the format of input file        		 - source code - -
        - -
        -   - - - - - - -
        getFileid(fullpath)
        - get the md5 id of the file path fullpath - the abs path of the file - return - the file path        		 - source code - -
        - -
        -   - - - - - - -
        importClass(modpath, - modname, - classname, - *args)
        - Import certain class with certain inputs        		 - source code - -
        - -
        -   - - - - - - -
        parseXYToList(filename)
        - Parse XY or XYSigma data to list        		 - source code - -
        - -
        -   - - - - - - -
        printDebugInfo()
        - Print the information for debug        		 - source code - -
        - -
        -   - - - - - - -
        printWarning(warningMsg)
        - Print a red warning message to the std output warningMsg : the - warning message to be printed        		 - source code - -
        - -
        -   - - - - - - -
        unique(seq)
        - Get unique items from a sequence while keeping its original order        		 - source code - -
        - -
        - - - - - - - - - -
        - Variables
        -   - - __package__ = 'diffpy.srrietveld' -
        -

        Imports: - cStringIO, - codecs, - csv, - md5, - os, - sys, - traceback -


        - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
        - - - - - -
        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:57 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.utility-pysrc.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.utility-pysrc.html deleted file mode 100644 index b7305208..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.utility-pysrc.html +++ /dev/null @@ -1,269 +0,0 @@ - - - - - diffpy.srrietveld.utility - - - - - - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module utility - - - - - -
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        -
        -

        Source Code for Module diffpy.srrietveld.utility

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2009 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Peng Tian 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ################################################################################ 
- 14   
- 15  """Common shared functions that do not fit anywhere else. 
- 16  """ 
- 17   
- 18  import os 
- 19  import sys 
- 20  import traceback 
- 21  from hashlib import md5 
- 22   
- 23   
-
         24 -def checkFormat(filename): 
-
         25      """ Check the format of input file """ 
- 26      filebasename = os.path.basename(filename) 
- 27      fileformat = os.path.splitext(filebasename)[-1][1:].lower() 
- 28      return fileformat 
-
         29   
- 30   
-
         31 -def importClass(modpath, modname, classname, *args): 
-
         32      """ Import certain class with certain inputs """ 
- 33      mod = __import__(modpath, globals(), locals(), [modname], -1) 
- 34      cls = getattr(mod, classname) 
- 35      return cls(*args) 
-
         36   
-
         37 -def parseXYToList(filename): 
-
         38      """ Parse XY or XYSigma data to list """ 
- 39      # 1. read file 
- 40      ifile = open(filename, "r") 
- 41      inlines = ifile.readlines() 
- 42      ifile.close() 
- 43   
- 44      # 2. parse content 
- 45      datalist = [] 
- 46      for line in inlines: 
- 47          terms = line.strip().split() 
- 48          if len(terms) > 1 and terms[0] not in ["#", ""]: 
- 49              datalist.append((float(terms[0]), float(terms[1]))) 
- 50      return datalist 
-
         51   
- 52   
- 53  # PJ FIXME: use the Python logging module instead 
- 54   
-
         55 -def printWarning(warningMsg): 
-
         56      '''Print a red warning message to the std output 
- 57      warningMsg : the warning message to be printed 
- 58      ''' 
- 59      #print '\\033[1;31m' + 'WARNING: ' + warningMsg + '\\033[1;m' 
- 60      print 'WARNING: ' + warningMsg 
- 61      return 
-
         62   
- 63   
-
         64 -def unique(seq): 
-
         65      '''Get unique items from a sequence while keeping its original order''' 
- 66      seen = set() 
- 67      for item in seq: 
- 68          if item in seen:  continue 
- 69          seen.add(item) 
- 70          yield item 
- 71      pass 
-
         72   
- 73   
-
         74 -def getFileid(fullpath): 
-
         75      '''get the md5 id of the file path 
- 76      fullpath - the abs path of the file 
- 77      return - the file path''' 
- 78      fid = None 
- 79      fid = md5(open(fullpath, 'rb').read()).hexdigest() 
- 80      return fid 
-
         81   
- 82   
-
         83 -def printDebugInfo(): 
-
         84      '''Print the information for debug''' 
- 85      exc_type, exc_value, exc_traceback = sys.exc_info() 
- 86      traceback.print_exception(exc_type, exc_value, exc_traceback, 
- 87            limit=100, file=sys.stdout) 
- 88      return 
-
         89   
- 90  ############################################################################## 
- 91  # csv reader and writer for unicode data, an extra encoding parameter is added 
- 92  ############################################################################## 
- 93   
- 94  import csv, codecs, cStringIO 
- 95   
-
         96 -class UTF8Recoder: 
-
         97      """ 
- 98      Iterator that reads an encoded stream and reencodes the input to UTF-8 
- 99      """ 
-
        100 -    def __init__(self, f, encoding): 
-
        101          self.reader = codecs.getreader(encoding)(f) 
-
        102   
-
        103 -    def __iter__(self): 
-
        104          return self 
-
        105   
-
        106 -    def next(self): 
-
        107          return self.reader.next().encode("utf-8") 
-
        108   
-
        109 -class UnicodeReader: 
-
        110      """ 
-111      A CSV reader which will iterate over lines in the CSV file "f", 
-112      which is encoded in the given encoding. 
-113      """ 
-114   
-
        115 -    def __init__(self, f, dialect=csv.excel, encoding="utf-8", **kwds): 
-
        116          f = UTF8Recoder(f, encoding) 
-117          self.reader = csv.reader(f, dialect=dialect, **kwds) 
-
        118   
-
        119 -    def next(self): 
-
        120          row = self.reader.next() 
-121          return [unicode(s, "utf-8") for s in row] 
-
        122   
-
        123 -    def __iter__(self): 
-
        124          return self 
-
        125   
-
        126 -class UnicodeWriter: 
-
        127      """ 
-128      A CSV writer which will write rows to CSV file "f", 
-129      which is encoded in the given encoding. 
-130      """ 
-131   
-
        132 -    def __init__(self, f, dialect=csv.excel, encoding="utf-8", **kwds): 
-
        133          # Redirect output to a queue 
-134          self.queue = cStringIO.StringIO() 
-135          self.writer = csv.writer(self.queue, dialect=dialect, **kwds) 
-136          self.stream = f 
-137          self.encoder = codecs.getincrementalencoder(encoding)() 
-
        138   
-
        139 -    def writerow(self, row): 
-
        140          self.writer.writerow([s.encode("utf-8") for s in row]) 
-141          # Fetch UTF-8 output from the queue ... 
-142          data = self.queue.getvalue() 
-143          data = data.decode("utf-8") 
-144          # ... and reencode it into the target encoding 
-145          data = self.encoder.encode(data) 
-146          # write to the target stream 
-147          self.stream.write(data) 
-148          # empty queue 
-149          self.queue.truncate(0) 
-
        150   
-
        151 -    def writerows(self, rows): 
-
        152          for row in rows: 
-153              self.writerow(row) 
-
        154   
-
        -
        - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
        - - - - - -
        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:58 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.utility.UTF8Recoder-class.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.utility.UTF8Recoder-class.html deleted file mode 100644 index 87b9b636..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.utility.UTF8Recoder-class.html +++ /dev/null @@ -1,170 +0,0 @@ - - - - - diffpy.srrietveld.utility.UTF8Recoder - - - - - - - - - - - - - - - - - - - - - -
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        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module utility :: - Class UTF8Recoder - - - - - -
        [frames] | no frames]
        -
        - -

        Class UTF8Recoder

        source code

        -

        Iterator that reads an encoded stream and reencodes the input to - UTF-8

        - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - f, - encoding) - source code - -
        - -
        -   - - - - - - -
        __iter__(self) - source code - -
        - -
        -   - - - - - - -
        next(self) - source code - -
        - -
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        - - Package diffpy :: - Package srrietveld :: - Module utility :: - Class UnicodeReader - - - - - -
        [frames] | no frames]
        -
        - -

        Class UnicodeReader

        source code

        -

        A CSV reader which will iterate over lines in the CSV file - "f", which is encoded in the given encoding.

        - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - f, - dialect=<class csv.excel at 0x3507598>, - encoding='utf-8', - **kwds) - source code - -
        - -
        -   - - - - - - -
        __iter__(self) - source code - -
        - -
        -   - - - - - - -
        next(self) - source code - -
        - -
        - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
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        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module utility :: - Class UnicodeWriter - - - - - -
        [frames] | no frames]
        -
        - -

        Class UnicodeWriter

        source code

        -

        A CSV writer which will write rows to CSV file "f", which is - encoded in the given encoding.

        - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self, - f, - dialect=<class csv.excel at 0x3507598>, - encoding='utf-8', - **kwds) - source code - -
        - -
        -   - - - - - - -
        writerow(self, - row) - source code - -
        - -
        -   - - - - - - -
        writerows(self, - rows) - source code - -
        - -
        - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
        - - - - - -
        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:58 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.version-module.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.version-module.html deleted file mode 100644 index f672aa1f..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.version-module.html +++ /dev/null @@ -1,142 +0,0 @@ - - - - - diffpy.srrietveld.version - - - - - - - - - - - - - - - - - - - - - -
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        - - Package diffpy :: - Package srrietveld :: - Module version - - - - - -
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        -
        - -

        Module version

        source code

        -

        Definition of __version__ and __date__ for diffpy.srrietveld.

        - -
        -

        Version: - 1.0beta.dev-r6361-20110319 -

        -

        Date: - 2011-03-19 -

        -
        - - - - - - - - - - - -
        - Variables
        -   - - __id__ = '$Id: version.py 5658 2010-07-09 20:05:34Z juhas $' -
        -   - - __package__ = 'diffpy.srrietveld' -
        -

        Imports: - get_distribution -


        - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
        - - - - - -
        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:57 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/diffpy.srrietveld.version-pysrc.html b/static_root/doc/srrietveld/api/diffpy.srrietveld.version-pysrc.html deleted file mode 100644 index e2bc99d1..00000000 --- a/static_root/doc/srrietveld/api/diffpy.srrietveld.version-pysrc.html +++ /dev/null @@ -1,166 +0,0 @@ - - - - - diffpy.srrietveld.version - - - - - - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
        - - Package diffpy :: - Package srrietveld :: - Module version - - - - - -
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        -
        -

        Source Code for Module diffpy.srrietveld.version

        -
        - 1  ############################################################################## 
- 2  # 
- 3  # diffpy.srrietveld by DANSE Diffraction group 
- 4  #                   Simon J. L. Billinge 
- 5  #                   (c) 2008 Trustees of the Columbia University 
- 6  #                   in the City of New York.  All rights reserved. 
- 7  # 
- 8  # File coded by:    Pavol Juhas 
- 9  # 
-10  # See AUTHORS.txt for a list of people who contributed. 
-11  # See LICENSE.txt for license information. 
-12  # 
-13  ############################################################################## 
-14   
-15  """Definition of __version__ and __date__ for diffpy.srrietveld. 
-16  """ 
-17   
-18  __id__ = "$Id: version.py 5658 2010-07-09 20:05:34Z juhas $" 
-19   
-20  # obtain version information 
-21  from pkg_resources import get_distribution 
-22  __version__ = get_distribution('diffpy.srrietveld').version 
-23   
-24  # we assume that tag_date was used and __version__ ends in YYYYMMDD 
-25  __date__ = __version__[-8:-4] + '-' + \ 
-26             __version__[-4:-2] + '-' + __version__[-2:] 
-27   
-28  # End of file 
-29   
-
        -
        - - - - - - - - - - - - - - - - -
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        ). The page title may be followed by a link to the - * corresponding source code (using 'span.codelink'). - * - The footer consists of a navigation bar, a timestamp, and a - * pointer to epydoc's homepage. - */ -h1.epydoc { margin: 0; font-size: +140%; font-weight: bold; } -h2.epydoc { font-size: +130%; font-weight: bold; } -h3.epydoc { font-size: +115%; font-weight: bold; - margin-top: 0.2em; } -td h3.epydoc { font-size: +115%; font-weight: bold; - margin-bottom: 0; } -table.navbar { background: #a0c0ff; color: #000000; - border: 2px groove #c0d0d0; } -table.navbar table { color: #000000; } -th.navbar-select { background: #70b0ff; - color: #000000; } -table.navbar a { text-decoration: none; } -table.navbar a:link { color: #0000ff; } -table.navbar a:visited { color: #204080; } -span.breadcrumbs { font-size: 85%; font-weight: bold; } -span.options { font-size: 70%; } -span.codelink { font-size: 85%; } -td.footer { font-size: 85%; } - -/* Table Headers - * - Each summary table and details section begins with a 'header' - * row. This row contains a section title (marked by - * 'span.table-header') as well as a show/hide private link - * (marked by 'span.options', defined above). - * - Summary tables that contain user-defined groups mark those - * groups using 'group header' rows. - */ -td.table-header { background: #70b0ff; color: #000000; - border: 1px solid #608090; } -td.table-header table { color: #000000; } -td.table-header table a:link { color: #0000ff; } -td.table-header table a:visited { color: #204080; } -span.table-header { font-size: 120%; font-weight: bold; } -th.group-header { background: #c0e0f8; color: #000000; - text-align: left; font-style: italic; - font-size: 115%; - border: 1px solid #608090; } - -/* Summary Tables (functions, variables, etc) - * - Each object is described by a single row of the table with - * two cells. The left cell gives the object's type, and is - * marked with 'code.summary-type'. The right cell gives the - * object's name and a summary description. - * - CSS styles for the table's header and group headers are - * defined above, under 'Table Headers' - */ -table.summary { border-collapse: collapse; - background: #e8f0f8; color: #000000; - border: 1px solid #608090; - margin-bottom: 0.5em; } -td.summary { border: 1px solid #608090; } -code.summary-type { font-size: 85%; } -table.summary a:link { color: #0000ff; } -table.summary a:visited { color: #204080; } - - -/* Details Tables (functions, variables, etc) - * - Each object is described in its own div. - * - A single-row summary table w/ table-header is used as - * a header for each details section (CSS style for table-header - * is defined above, under 'Table Headers'). - */ -table.details { border-collapse: collapse; - background: #e8f0f8; color: #000000; - border: 1px solid #608090; - margin: .2em 0 0 0; } -table.details table { color: #000000; } -table.details a:link { color: #0000ff; } -table.details a:visited { color: #204080; } - -/* Fields */ -dl.fields { margin-left: 2em; margin-top: 1em; - margin-bottom: 1em; } -dl.fields dd ul { margin-left: 0em; padding-left: 0em; } -dl.fields dd ul li ul { margin-left: 2em; padding-left: 0em; } -div.fields { margin-left: 2em; } -div.fields p { margin-bottom: 0.5em; } - -/* Index tables (identifier index, term index, etc) - * - link-index is used for indices containing lists of links - * (namely, the identifier index & term index). - * - index-where is used in link indices for the text indicating - * the container/source for each link. - * - metadata-index is used for indices containing metadata - * extracted from fields (namely, the bug index & todo index). - */ -table.link-index { border-collapse: collapse; - background: #e8f0f8; color: #000000; - border: 1px solid #608090; } -td.link-index { border-width: 0px; } -table.link-index a:link { color: #0000ff; } -table.link-index a:visited { color: #204080; } -span.index-where { font-size: 70%; } -table.metadata-index { border-collapse: collapse; - background: #e8f0f8; color: #000000; - border: 1px solid #608090; - margin: .2em 0 0 0; } -td.metadata-index { border-width: 1px; border-style: solid; } -table.metadata-index a:link { color: #0000ff; } -table.metadata-index a:visited { color: #204080; } - -/* Function signatures - * - sig* is used for the signature in the details section. - * - .summary-sig* is used for the signature in the summary - * table, and when listing property accessor functions. - * */ -.sig-name { color: #006080; } -.sig-arg { color: #008060; } -.sig-default { color: #602000; } -.summary-sig { font-family: monospace; } -.summary-sig-name { color: #006080; font-weight: bold; } -table.summary a.summary-sig-name:link - { color: #006080; font-weight: bold; } -table.summary a.summary-sig-name:visited - { color: #006080; font-weight: bold; } -.summary-sig-arg { color: #006040; } -.summary-sig-default { color: #501800; } - -/* Subclass list - */ -ul.subclass-list { display: inline; } -ul.subclass-list li { display: inline; } - -/* To render variables, classes etc. like functions */ -table.summary .summary-name { color: #006080; font-weight: bold; - font-family: monospace; } -table.summary - a.summary-name:link { color: #006080; font-weight: bold; - font-family: monospace; } -table.summary - a.summary-name:visited { color: #006080; font-weight: bold; - font-family: monospace; } - -/* Variable values - * - In the 'variable details' sections, each varaible's value is - * listed in a 'pre.variable' box. The width of this box is - * restricted to 80 chars; if the value's repr is longer than - * this it will be wrapped, using a backslash marked with - * class 'variable-linewrap'. If the value's repr is longer - * than 3 lines, the rest will be ellided; and an ellipsis - * marker ('...' marked with 'variable-ellipsis') will be used. - * - If the value is a string, its quote marks will be marked - * with 'variable-quote'. - * - If the variable is a regexp, it is syntax-highlighted using - * the re* CSS classes. - */ -pre.variable { padding: .5em; margin: 0; - background: #dce4ec; color: #000000; - border: 1px solid #708890; } -.variable-linewrap { color: #604000; font-weight: bold; } -.variable-ellipsis { color: #604000; font-weight: bold; } -.variable-quote { color: #604000; font-weight: bold; } -.variable-group { color: #008000; font-weight: bold; } -.variable-op { color: #604000; font-weight: bold; } -.variable-string { color: #006030; } -.variable-unknown { color: #a00000; font-weight: bold; } -.re { color: #000000; } -.re-char { color: #006030; } -.re-op { color: #600000; } -.re-group { color: #003060; } -.re-ref { color: #404040; } - -/* Base tree - * - Used by class pages to display the base class hierarchy. - */ -pre.base-tree { font-size: 80%; margin: 0; } - -/* Frames-based table of contents headers - * - Consists of two frames: one for selecting modules; and - * the other listing the contents of the selected module. - * - h1.toc is used for each frame's heading - * - h2.toc is used for subheadings within each frame. - */ -h1.toc { text-align: center; font-size: 105%; - margin: 0; font-weight: bold; - padding: 0; } -h2.toc { font-size: 100%; font-weight: bold; - margin: 0.5em 0 0 -0.3em; } - -/* Syntax Highlighting for Source Code - * - doctest examples are displayed in a 'pre.py-doctest' block. - * If the example is in a details table entry, then it will use - * the colors specified by the 'table pre.py-doctest' line. - * - Source code listings are displayed in a 'pre.py-src' block. - * Each line is marked with 'span.py-line' (used to draw a line - * down the left margin, separating the code from the line - * numbers). Line numbers are displayed with 'span.py-lineno'. - * The expand/collapse block toggle button is displayed with - * 'a.py-toggle' (Note: the CSS style for 'a.py-toggle' should not - * modify the font size of the text.) - * - If a source code page is opened with an anchor, then the - * corresponding code block will be highlighted. The code - * block's header is highlighted with 'py-highlight-hdr'; and - * the code block's body is highlighted with 'py-highlight'. - * - The remaining py-* classes are used to perform syntax - * highlighting (py-string for string literals, py-name for names, - * etc.) - */ -pre.py-doctest { padding: .5em; margin: 1em; - background: #e8f0f8; color: #000000; - border: 1px solid #708890; } -table pre.py-doctest { background: #dce4ec; - color: #000000; } -pre.py-src { border: 2px solid #000000; - background: #f0f0f0; color: #000000; } -.py-line { border-left: 2px solid #000000; - margin-left: .2em; padding-left: .4em; } -.py-lineno { font-style: italic; font-size: 90%; - padding-left: .5em; } -a.py-toggle { text-decoration: none; } -div.py-highlight-hdr { border-top: 2px solid #000000; - border-bottom: 2px solid #000000; - background: #d8e8e8; } -div.py-highlight { border-bottom: 2px solid #000000; - background: #d0e0e0; } -.py-prompt { color: #005050; font-weight: bold;} -.py-more { color: #005050; font-weight: bold;} -.py-string { color: #006030; } -.py-comment { color: #003060; } -.py-keyword { color: #600000; } -.py-output { color: #404040; } -.py-name { color: #000050; } -.py-name:link { color: #000050 !important; } -.py-name:visited { color: #000050 !important; } -.py-number { color: #005000; } -.py-defname { color: #000060; font-weight: bold; } -.py-def-name { color: #000060; font-weight: bold; } -.py-base-class { color: #000060; } -.py-param { color: #000060; } -.py-docstring { color: #006030; } -.py-decorator { color: #804020; } -/* Use this if you don't want links to names underlined: */ -/*a.py-name { text-decoration: none; }*/ - -/* Graphs & Diagrams - * - These CSS styles are used for graphs & diagrams generated using - * Graphviz dot. 'img.graph-without-title' is used for bare - * diagrams (to remove the border created by making the image - * clickable). - */ -img.graph-without-title { border: none; } -img.graph-with-title { border: 1px solid #000000; } -span.graph-title { font-weight: bold; } -span.graph-caption { } - -/* General-purpose classes - * - 'p.indent-wrapped-lines' defines a paragraph whose first line - * is not indented, but whose subsequent lines are. - * - The 'nomargin-top' class is used to remove the top margin (e.g. - * from lists). The 'nomargin' class is used to remove both the - * top and bottom margin (but not the left or right margin -- - * for lists, that would cause the bullets to disappear.) - */ -p.indent-wrapped-lines { padding: 0 0 0 7em; text-indent: -7em; - margin: 0; } -.nomargin-top { margin-top: 0; } -.nomargin { margin-top: 0; margin-bottom: 0; } - -/* HTML Log */ -div.log-block { padding: 0; margin: .5em 0 .5em 0; - background: #e8f0f8; color: #000000; - border: 1px solid #000000; } -div.log-error { padding: .1em .3em .1em .3em; margin: 4px; - background: #ffb0b0; color: #000000; - border: 1px solid #000000; } -div.log-warning { padding: .1em .3em .1em .3em; margin: 4px; - background: #ffffb0; color: #000000; - border: 1px solid #000000; } -div.log-info { padding: .1em .3em .1em .3em; margin: 4px; - background: #b0ffb0; color: #000000; - border: 1px solid #000000; } -h2.log-hdr { background: #70b0ff; color: #000000; - margin: 0; padding: 0em 0.5em 0em 0.5em; - border-bottom: 1px solid #000000; font-size: 110%; } -p.log { font-weight: bold; margin: .5em 0 .5em 0; } -tr.opt-changed { color: #000000; font-weight: bold; } -tr.opt-default { color: #606060; } -pre.log { margin: 0; padding: 0; padding-left: 1em; } diff --git a/static_root/doc/srrietveld/api/epydoc.js b/static_root/doc/srrietveld/api/epydoc.js deleted file mode 100644 index e787dbcf..00000000 --- a/static_root/doc/srrietveld/api/epydoc.js +++ /dev/null @@ -1,293 +0,0 @@ -function toggle_private() { - // Search for any private/public links on this page. Store - // their old text in "cmd," so we will know what action to - // take; and change their text to the opposite action. - var cmd = "?"; - var elts = document.getElementsByTagName("a"); - for(var i=0; i...
        "; - elt.innerHTML = s; - } -} - -function toggle(id) { - elt = document.getElementById(id+"-toggle"); - if (elt.innerHTML == "-") - collapse(id); - else - expand(id); - return false; -} - -function highlight(id) { - var elt = document.getElementById(id+"-def"); - if (elt) elt.className = "py-highlight-hdr"; - var elt = document.getElementById(id+"-expanded"); - if (elt) elt.className = "py-highlight"; - var elt = document.getElementById(id+"-collapsed"); - if (elt) elt.className = "py-highlight"; -} - -function num_lines(s) { - var n = 1; - var pos = s.indexOf("\n"); - while ( pos > 0) { - n += 1; - pos = s.indexOf("\n", pos+1); - } - return n; -} - -// Collapse all blocks that mave more than `min_lines` lines. -function collapse_all(min_lines) { - var elts = document.getElementsByTagName("div"); - for (var i=0; i 0) - if (elt.id.substring(split, elt.id.length) == "-expanded") - if (num_lines(elt.innerHTML) > min_lines) - collapse(elt.id.substring(0, split)); - } -} - -function expandto(href) { - var start = href.indexOf("#")+1; - if (start != 0 && start != href.length) { - if (href.substring(start, href.length) != "-") { - collapse_all(4); - pos = href.indexOf(".", start); - while (pos != -1) { - var id = href.substring(start, pos); - expand(id); - pos = href.indexOf(".", pos+1); - } - var id = href.substring(start, href.length); - expand(id); - highlight(id); - } - } -} - -function kill_doclink(id) { - var parent = document.getElementById(id); - parent.removeChild(parent.childNodes.item(0)); -} -function auto_kill_doclink(ev) { - if (!ev) var ev = window.event; - if (!this.contains(ev.toElement)) { - var parent = document.getElementById(this.parentID); - parent.removeChild(parent.childNodes.item(0)); - } -} - -function doclink(id, name, targets_id) { - var elt = document.getElementById(id); - - // If we already opened the box, then destroy it. - // (This case should never occur, but leave it in just in case.) - if (elt.childNodes.length > 1) { - elt.removeChild(elt.childNodes.item(0)); - } - else { - // The outer box: relative + inline positioning. - var box1 = document.createElement("div"); - box1.style.position = "relative"; - box1.style.display = "inline"; - box1.style.top = 0; - box1.style.left = 0; - - // A shadow for fun - var shadow = document.createElement("div"); - shadow.style.position = "absolute"; - shadow.style.left = "-1.3em"; - shadow.style.top = "-1.3em"; - shadow.style.background = "#404040"; - - // The inner box: absolute positioning. - var box2 = document.createElement("div"); - box2.style.position = "relative"; - box2.style.border = "1px solid #a0a0a0"; - box2.style.left = "-.2em"; - box2.style.top = "-.2em"; - box2.style.background = "white"; - box2.style.padding = ".3em .4em .3em .4em"; - box2.style.fontStyle = "normal"; - box2.onmouseout=auto_kill_doclink; - box2.parentID = id; - - // Get the targets - var targets_elt = document.getElementById(targets_id); - var targets = targets_elt.getAttribute("targets"); - var links = ""; - target_list = targets.split(","); - for (var i=0; i" + - target[0] + ""; - } - - // Put it all together. - elt.insertBefore(box1, elt.childNodes.item(0)); - //box1.appendChild(box2); - box1.appendChild(shadow); - shadow.appendChild(box2); - box2.innerHTML = - "Which "+name+" do you want to see documentation for?" + - ""; - } - return false; -} - -function get_anchor() { - var href = location.href; - var start = href.indexOf("#")+1; - if ((start != 0) && (start != href.length)) - return href.substring(start, href.length); - } -function redirect_url(dottedName) { - // Scan through each element of the "pages" list, and check - // if "name" matches with any of them. - for (var i=0; i-m" or "-c"; - // extract the portion & compare it to dottedName. - var pagename = pages[i].substring(0, pages[i].length-2); - if (pagename == dottedName.substring(0,pagename.length)) { - - // We've found a page that matches `dottedName`; - // construct its URL, using leftover `dottedName` - // content to form an anchor. - var pagetype = pages[i].charAt(pages[i].length-1); - var url = pagename + ((pagetype=="m")?"-module.html": - "-class.html"); - if (dottedName.length > pagename.length) - url += "#" + dottedName.substring(pagename.length+1, - dottedName.length); - return url; - } - } - } diff --git a/static_root/doc/srrietveld/api/frames.html b/static_root/doc/srrietveld/api/frames.html deleted file mode 100644 index abb3c7cd..00000000 --- a/static_root/doc/srrietveld/api/frames.html +++ /dev/null @@ -1,17 +0,0 @@ - - - - - diffpy.srrietveld - - - - - - - - - diff --git a/static_root/doc/srrietveld/api/help.html b/static_root/doc/srrietveld/api/help.html deleted file mode 100644 index a3331524..00000000 --- a/static_root/doc/srrietveld/api/help.html +++ /dev/null @@ -1,270 +0,0 @@ - - - - - Help - - - - - - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
          - - - -
        [frames] | no frames]
        -
        - -

        API Documentation

        - -

        This document contains the API (Application Programming Interface) -documentation for diffpy.srrietveld. Documentation for the Python -objects defined by the project is divided into separate pages for each -package, module, and class. The API documentation also includes two -pages containing information about the project as a whole: a trees -page, and an index page.

        - -

        Object Documentation

        - -

        Each Package Documentation page contains:

        -
          -
        • A description of the package.
          • -
        • A list of the modules and sub-packages contained by the - package.
          • -
        • A summary of the classes defined by the package.
          • -
        • A summary of the functions defined by the package.
          • -
        • A summary of the variables defined by the package.
          • -
        • A detailed description of each function defined by the - package.
          • -
        • A detailed description of each variable defined by the - package.
          • -
        - -

        Each Module Documentation page contains:

        -
          -
        • A description of the module.
          • -
        • A summary of the classes defined by the module.
          • -
        • A summary of the functions defined by the module.
          • -
        • A summary of the variables defined by the module.
          • -
        • A detailed description of each function defined by the - module.
          • -
        • A detailed description of each variable defined by the - module.
          • -
        - -

        Each Class Documentation page contains:

        -
          -
        • A class inheritance diagram.
          • -
        • A list of known subclasses.
          • -
        • A description of the class.
          • -
        • A summary of the methods defined by the class.
          • -
        • A summary of the instance variables defined by the class.
          • -
        • A summary of the class (static) variables defined by the - class.
          • -
        • A detailed description of each method defined by the - class.
          • -
        • A detailed description of each instance variable defined by the - class.
          • -
        • A detailed description of each class (static) variable defined - by the class.
          • -
        - -

        Project Documentation

        - -

        The Trees page contains the module and class hierarchies:

        -
          -
        • The module hierarchy lists every package and module, with - modules grouped into packages. At the top level, and within each - package, modules and sub-packages are listed alphabetically.
          • -
        • The class hierarchy lists every class, grouped by base - class. If a class has more than one base class, then it will be - listed under each base class. At the top level, and under each base - class, classes are listed alphabetically.
          • -
        - -

        The Index page contains indices of terms and - identifiers:

        -
          -
        • The term index lists every term indexed by any object's - documentation. For each term, the index provides links to each - place where the term is indexed.
          • -
        • The identifier index lists the (short) name of every package, - module, class, method, function, variable, and parameter. For each - identifier, the index provides a short description, and a link to - its documentation.
          • -
        - -

        The Table of Contents

        - -

        The table of contents occupies the two frames on the left side of -the window. The upper-left frame displays the project -contents, and the lower-left frame displays the module -contents:

        - - - - - - - - - -
        - Project
        Contents
        ...        		 - API
        Documentation
        Frame


        -
        - Module
        Contents
         
        ...
          -

        - -

        The project contents frame contains a list of all packages -and modules that are defined by the project. Clicking on an entry -will display its contents in the module contents frame. Clicking on a -special entry, labeled "Everything," will display the contents of -the entire project.

        - -

        The module contents frame contains a list of every -submodule, class, type, exception, function, and variable defined by a -module or package. Clicking on an entry will display its -documentation in the API documentation frame. Clicking on the name of -the module, at the top of the frame, will display the documentation -for the module itself.

        - -

        The "frames" and "no frames" buttons below the top -navigation bar can be used to control whether the table of contents is -displayed or not.

        - -

        The Navigation Bar

        - -

        A navigation bar is located at the top and bottom of every page. -It indicates what type of page you are currently viewing, and allows -you to go to related pages. The following table describes the labels -on the navigation bar. Note that not some labels (such as -[Parent]) are not displayed on all pages.

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        LabelHighlighted when...Links to...
        [Parent](never highlighted) the parent of the current package
        [Package]viewing a packagethe package containing the current object -
        [Module]viewing a modulethe module containing the current object -
        [Class]viewing a class the class containing the current object
        [Trees]viewing the trees page the trees page
        [Index]viewing the index page the index page
        [Help]viewing the help page the help page
        - -

        The "show private" and "hide private" buttons below -the top navigation bar can be used to control whether documentation -for private objects is displayed. Private objects are usually defined -as objects whose (short) names begin with a single underscore, but do -not end with an underscore. For example, "_x", -"__pprint", and "epydoc.epytext._tokenize" -are private objects; but "re.sub", -"__init__", and "type_" are not. However, -if a module defines the "__all__" variable, then its -contents are used to decide which objects are private.

        - -

        A timestamp below the bottom navigation bar indicates when each -page was last updated.

        - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:57 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/identifier-index.html b/static_root/doc/srrietveld/api/identifier-index.html deleted file mode 100644 index 776906e2..00000000 --- a/static_root/doc/srrietveld/api/identifier-index.html +++ /dev/null @@ -1,1388 +0,0 @@ - - - - - Identifier Index - - - - - - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
          - - - -
        [frames] | no frames]
        -
        - -
        -

        Identifier Index

        -        		 -[ - A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - Q - R - S - T - U - V - W - X - Y - Z - _ -] -
        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

        A

        		 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        addBkgdPoints()
        -(in BuildFit)        		addParamToStrategy()
        -(in Refinement)        		applications
        -(in diffpy.srrietveld)
        addExre()
        -(in BuildFit)        		addPosParam()
        -(in StrategyFile)        		applydata()
        -(in trunk.diffpy.srrietveld.applications.refine)
        addJob()
        -(in Project)        		addSampleData()
        -(in MonteCarloSampling)        		atom
        -(in diffpy.srrietveld)
        addNewStep()
        -(in StrategyFile)        		addToInstDict()
        -(in BackgroundXML)        		Atom
        -(in diffpy.srrietveld.atom)
        addon
        -(in diffpy.srrietveld)        		addToZip()
        -(in Project)        		 
        addParam()
        -(in StrategyFile)        		adps()
        -(in diffpy.srrietveld.addon.debyefitting)        		 
        -

        B

        		 - - - - - - - - - - - - - - - - -
        BackgroundXML
        -(in diffpy.srrietveld.convert.xmlparser)        		buildfit
        -(in diffpy.srrietveld)        		buildPattern()
        -(in BuildFit)
        bugreport
        -(in diffpy.srrietveld)        		BuildFit
        -(in diffpy.srrietveld.buildfit)        		buildPeakProfile()
        -(in BuildFit)
        buildContribution()
        -(in BuildFit)        		buildFit()
        -(in BuildFit)        		buildPhase()
        -(in BuildFit)
        -

        C

        		 - - - - - - - - - - - - - - - - - - - - - -
        checkEXPFile()
        -(in DataFileConverter)        		clean()
        -(in FitRT)        		copyObjectData()
        -(in diffpy.srrietveld.project)
        checkFormat()
        -(in diffpy.srrietveld.utility)        		clear()
        -(in StrategyFile)        		createDataDict()
        -(in diffpy.srrietveld.addon.datafile)
        chiToFP()
        -(in DataFileConverter)        		close()
        -(in Project)        		CSVListFileReader
        -(in diffpy.srrietveld.convert.listfilereader)
        cifToDict()
        -(in StructureFileConverter)        		convert
        -(in diffpy.srrietveld)        		 
        -

        D

        		 - - - - - - - - - - - - - - - - - - - - - - - - - - -
        datafile
        -(in diffpy.srrietveld.addon)        		debyefitting
        -(in diffpy.srrietveld.addon)        		dumpEngineFile()
        -(in Refinement)
        datafile
        -(in diffpy.srrietveld.convert)        		DebyeFitting
        -(in diffpy.srrietveld.addon.debyefitting)        		dumpFileFromDataset()
        -(in Refinement)
        DataFile
        -(in diffpy.srrietveld.convert.datafile)        		deleteJob()
        -(in Project)        		dumpFiles()
        -(in Refinement)
        DataFileConverter
        -(in diffpy.srrietveld.addon.datafile)        		dump()
        -(in DataFile)        		dumpIncidentSpectrumFile()
        -(in Refinement)
        debye()
        -(in diffpy.srrietveld.addon.debyefitting)        		dumpDataFile()
        -(in Refinement)        		dumpInstrumentFile()
        -(in Refinement)
        -

        E

        		 - - - - - - - - - - - - - - - - - - - - - -
        exceptions
        -(in diffpy.srrietveld)        		exportCifFile()
        -(in diffpy.srrietveld.export)        		exportEngineObject()
        -(in diffpy.srrietveld.project)
        ExcludedRegion
        -(in diffpy.srrietveld.pattern)        		exportDISAGLFile()
        -(in diffpy.srrietveld.export)        		exportGSASToXYE()
        -(in DataFileConverter)
        ExcludedRegionXML
        -(in diffpy.srrietveld.convert.xmlparser)        		exportEngineFile()
        -(in diffpy.srrietveld.export)        		 
        export
        -(in diffpy.srrietveld)        		exportEngineFit()
        -(in Project)        		 
        -

        F

        		 - - - - - - - - - - - - - - - - -
        findFileFromDataset()
        -(in Refinement)        		FitRT
        -(in diffpy.srrietveld.fitrt)        		FORM_URL
        -(in diffpy.srrietveld.bugreport)
        fit()
        -(in DebyeFitting)        		FORM_ENCPW
        -(in diffpy.srrietveld.bugreport)        		FORM_USER
        -(in diffpy.srrietveld.bugreport)
        fitrt
        -(in diffpy.srrietveld)        		FORM_REALM
        -(in diffpy.srrietveld.bugreport)        		 
        -

        G

        		 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        genSamplingFromchi()
        -(in MonteCarloSampling)        		getHelp()
        -(in diffpy.srrietveld.applications.srhelp)        		getRatio()
        -(in Pattern)
        genSamplingFromtimemap()
        -(in MonteCarloSampling)        		getInvolvedDatapaths()
        -(in Refinement)        		getRefinementByName()
        -(in Project)
        genSamplingFromxye()
        -(in MonteCarloSampling)        		getLambda()
        -(in Pattern)        		getRp()
        -(in Pattern)
        get()
        -(in ObjectInfo)        		getLambda1()
        -(in Pattern)        		getRwp()
        -(in Pattern)
        getAbsoluteDataFile()
        -(in Pattern)        		getLambda1Sigma()
        -(in Pattern)        		getScale()
        -(in Pattern)
        getAlpha()
        -(in Phase)        		getLambda2()
        -(in Pattern)        		getScaleSigma()
        -(in Pattern)
        getAlphaSigma()
        -(in Phase)        		getLambda2Sigma()
        -(in Pattern)        		getSpaceGroup()
        -(in Phase)
        getAtomByName()
        -(in Phase)        		getLambdaSigma()
        -(in Pattern)        		getStep()
        -(in Pattern)
        getBackgroundCoefficients()
        -(in Pattern)        		getLatticeA()
        -(in Phase)        		getStepMethod()
        -(in StrategyFile)
        getBackgroundCoefficientsSigma()
        -(in Pattern)        		getLatticeASigma()
        -(in Phase)        		getStepParamList()
        -(in StrategyFile)
        getBackgroundType()
        -(in Pattern)        		getLatticeB()
        -(in Phase)        		getStrategy()
        -(in StrategyFile)
        getBegin()
        -(in ExcludedRegion)        		getLatticeBSigma()
        -(in Phase)        		getStrategyId()
        -(in StrategyFile)
        getBeta()
        -(in Phase)        		getLatticeC()
        -(in Phase)        		getStrategyStep()
        -(in StrategyFile)
        getBetaSigma()
        -(in Phase)        		getLatticeCSigma()
        -(in Phase)        		getTmax()
        -(in Pattern)
        getBiso()
        -(in Atom)        		getName()
        -(in Atom)        		getTmin()
        -(in Pattern)
        getBisoSigma()
        -(in Atom)        		getName()
        -(in Phase)        		getType()
        -(in Atom)
        getChi2()
        -(in Refinement)        		getName()
        -(in Refinement)        		getUiso()
        -(in Atom)
        getCutOff()
        -(in Profile)        		getNewVariableId()
        -(in StrategyFile)        		getUisoSigma()
        -(in Atom)
        getDataFile()
        -(in Pattern)        		getNumOfAtoms()
        -(in Phase)        		getUseFlag()
        -(in Pattern)
        getDataFileFromPattern()
        -(in Refinement)        		getNumOfBackgroundCoefficients()
        -(in Pattern)        		getX()
        -(in Atom)
        getDescription()
        -(in ObjectInfo)        		getNumOfCoefficients()
        -(in Profile)        		getXobs()
        -(in Pattern)
        getEnd()
        -(in ExcludedRegion)        		getNumOfCycles()
        -(in Refinement)        		getXSigma()
        -(in Atom)
        getEngine()
        -(in MonteCarloSampling)        		getNumOfPatterns()
        -(in Refinement)        		getY()
        -(in Atom)
        getEngineFileExt()
        -(in Refinement)        		getNumOfPhases()
        -(in Refinement)        		getYcal()
        -(in Pattern)
        getEngineType()
        -(in Atom)        		getNumStep()
        -(in StrategyFile)        		getYobs()
        -(in Pattern)
        getEngineType()
        -(in ExcludedRegion)        		getOccupation()
        -(in Atom)        		getYSigma()
        -(in Atom)
        getEngineType()
        -(in Pattern)        		getOneStepStrategy()
        -(in Refinement)        		getZ()
        -(in Atom)
        getEngineType()
        -(in Phase)        		getParamListForStrategy()
        -(in Refinement)        		getZero()
        -(in Pattern)
        getEngineType()
        -(in Profile)        		getPhaseByName()
        -(in Refinement)        		getZeroSigma()
        -(in Pattern)
        getEngineType()
        -(in Refinement)        		getPolar()
        -(in Pattern)        		getZSigma()
        -(in Atom)
        getFileid()
        -(in diffpy.srrietveld.utility)        		getPolarType()
        -(in Pattern)        		GSASInstFile
        -(in diffpy.srrietveld.convert.gsasinstparser)
        getFormData()
        -(in diffpy.srrietveld.bugreport)        		getPosParamFullPath()
        -(in StrategyFile)        		gsasinstparser
        -(in diffpy.srrietveld.convert)
        getGamma()
        -(in Phase)        		getPosParamListId()
        -(in StrategyFile)        		 
        getGammaSigma()
        -(in Phase)        		getProfileType()
        -(in Profile)        		 
        -

        H

        		 - - - - - - - -
        helpstring
        -(in diffpy.srrietveld.applications.srhelp)        		  
           
        -

        I

        		 - - - - - - - - - - - - - - - - - - - - - -
        importClass()
        -(in diffpy.srrietveld.utility)        		importEngineObject()
        -(in diffpy.srrietveld.project)        		importXMLFile()
        -(in XMLFile)
        importDataFiles()
        -(in Project)        		importFromGSASstd()
        -(in diffpy.srrietveld.addon.mcsampling)        		InstrumentXML
        -(in diffpy.srrietveld.convert.xmlparser)
        importEngineFile()
        -(in Project)        		importFromGSAStimemap()
        -(in diffpy.srrietveld.addon.mcsampling)        		isParamTurnedOn()
        -(in Refinement)
        importEngineFit()
        -(in Project)        		importProject()
        -(in Project)        		 
        -

        L

        		 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        listAtomNames()
        -(in Phase)        		ListFileReader
        -(in diffpy.srrietveld.convert.listfilereader)        		listRefinementNames()
        -(in Project)
        listAtoms()
        -(in Phase)        		listParams()
        -(in ObjectInfo)        		loadDataFile()
        -(in Refinement)
        listCoefficientNames()
        -(in Profile)        		listParams()
        -(in Project)        		loadIncidentSpectrumFile()
        -(in Refinement)
        listEnvParamNames()
        -(in Refinement)        		listPatterns()
        -(in Refinement)        		loadInstrumentFile()
        -(in Refinement)
        listEnvParams()
        -(in Refinement)        		listPhaseNames()
        -(in Refinement)        		loadStrategyFile()
        -(in Refinement)
        listExcludedRegions()
        -(in Pattern)        		listPhases()
        -(in Refinement)        		 
        listfilereader
        -(in diffpy.srrietveld.convert)        		listProfiles()
        -(in Refinement)        		 
        -

        M

        		 - - - - - - - - - - - -
        main()
        -(in trunk.diffpy.srrietveld.applications.refine)        		mcsampling
        -(in diffpy.srrietveld.addon)        		MonteCarloSampling
        -(in diffpy.srrietveld.addon.mcsampling)
        mapKey()
        -(in GSASInstFile)        		mergeParamList()
        -(in StrategyFile)        		 
        -

        N

        		 - - - - - - - - - - - -
        next()
        -(in UTF8Recoder)        		normalizeGSAS()
        -(in DataFileConverter)        		 
        next()
        -(in UnicodeReader)        		numStrategySteps
        -(in Refinement)        		 
        -

        O

        		 - - - - - - - -
        objectinfo
        -(in diffpy.srrietveld)        		ObjectInfo
        -(in diffpy.srrietveld.objectinfo)        		 
           
        -

        P

        		 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        PARAMNAMES
        -(in diffpy.srrietveld.atom)        		parseStrategyFile()
        -(in StrategyFile)        		prepare()
        -(in FitRT)
        paramnames
        -(in diffpy.srrietveld)        		parseStructureXML()
        -(in StructureXML)        		prepareFile()
        -(in FitRT)
        PARAMNAMES
        -(in diffpy.srrietveld.paramnames)        		parseTOFInst()
        -(in GSASInstFile)        		prepDataFile()
        -(in DataFile)
        PARAMNAMES
        -(in diffpy.srrietveld.pattern)        		parseXYToList()
        -(in diffpy.srrietveld.utility)        		printDebugInfo()
        -(in diffpy.srrietveld.utility)
        PARAMNAMES
        -(in diffpy.srrietveld.phase)        		pattern
        -(in diffpy.srrietveld)        		printWarning()
        -(in diffpy.srrietveld.utility)
        PARAMNAMES
        -(in diffpy.srrietveld.profile)        		Pattern
        -(in diffpy.srrietveld.pattern)        		processInputs()
        -(in ReadInput)
        PARAMNAMES
        -(in diffpy.srrietveld.refinement)        		phase
        -(in diffpy.srrietveld)        		profile
        -(in diffpy.srrietveld)
        parseCWInst()
        -(in GSASInstFile)        		Phase
        -(in diffpy.srrietveld.phase)        		Profile
        -(in diffpy.srrietveld.profile)
        parseInstInfo()
        -(in GSASInstFile)        		plot()
        -(in Project)        		project
        -(in diffpy.srrietveld)
        parseInstrumentXML()
        -(in InstrumentXML)        		plotHistory()
        -(in Project)        		Project
        -(in diffpy.srrietveld.project)
        parseInstType()
        -(in GSASInstFile)        		plotPatterns()
        -(in Project)        		 
        parseOptions()
        -(in ReadInput)        		plotResults()
        -(in DebyeFitting)        		 
        -

        R

        		 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        readDataFile()
        -(in DataFileConverter)        		readListFile()
        -(in diffpy.srrietveld.convert.listfilereader)        		removeStep()
        -(in StrategyFile)
        readFile()
        -(in CSVListFileReader)        		refine
        -(in trunk.diffpy.srrietveld.applications)        		ResetVariableId()
        -(in StrategyFile)
        readFile()
        -(in ListFileReader)        		refinement
        -(in diffpy.srrietveld)        		resolveColumnLabel()
        -(in diffpy.srrietveld.convert.listfilereader)
        readFile()
        -(in StrategyFile)        		Refinement
        -(in diffpy.srrietveld.refinement)        		ROOT_URL
        -(in diffpy.srrietveld.bugreport)
        readFileList()
        -(in diffpy.srrietveld.addon.datafile)        		refineSingleStep()
        -(in FitRT)        		run()
        -(in FitRT)
        readGSASFile()
        -(in DataFileConverter)        		removeParamFromStrategy()
        -(in Refinement)        		run()
        -(in ReadInput)
        ReadInput
        -(in trunk.diffpy.srrietveld.applications.refine)        		removePosParam()
        -(in StrategyFile)        		 
        -

        S

        		 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        saveEngineFile()
        -(in Refinement)        		SrrConfigError
        -(in diffpy.srrietveld.exceptions)        		strategyfile
        -(in diffpy.srrietveld.convert)
        saveFilePathToDataset()
        -(in Refinement)        		SrrError
        -(in diffpy.srrietveld.exceptions)        		StrategyFile
        -(in diffpy.srrietveld.convert.strategyfile)
        saveResults()
        -(in DebyeFitting)        		SrrFileError
        -(in diffpy.srrietveld.exceptions)        		StrategyXML
        -(in diffpy.srrietveld.convert.xmlparser)
        saveToDisk()
        -(in Project)        		srrietveld
        -(in diffpy)        		structurefile
        -(in diffpy.srrietveld.addon)
        setConstraint()
        -(in FitRT)        		SrrInputError
        -(in diffpy.srrietveld.exceptions)        		StructureFileConverter
        -(in diffpy.srrietveld.addon.structurefile)
        setObjectInfo()
        -(in diffpy.srrietveld.objectinfo)        		SrrIOError
        -(in diffpy.srrietveld.exceptions)        		StructureXML
        -(in diffpy.srrietveld.convert.xmlparser)
        setStrategy()
        -(in StrategyFile)        		SrrRunTimeError
        -(in diffpy.srrietveld.exceptions)        		submitBugReport()
        -(in diffpy.srrietveld.bugreport)
        setStrategy()
        -(in Refinement)        		SrrValueError
        -(in diffpy.srrietveld.exceptions)        		 
        srhelp
        -(in diffpy.srrietveld.applications)        		strategy
        -(in Refinement)        		 
        -

        T

        		 - - - - - - - -
        toFPFile()
        -(in DataFileConverter)        		toGSASFile()
        -(in DataFileConverter)        		transRefinables()
        -(in StrategyFile)
           
        -

        U

        		 - - - - - - - - - - - - - - - - -
        UnicodeReader
        -(in diffpy.srrietveld.utility)        		updateFit()
        -(in Project)        		UTF8Recoder
        -(in diffpy.srrietveld.utility)
        UnicodeWriter
        -(in diffpy.srrietveld.utility)        		updatePaths()
        -(in Project)        		utility
        -(in diffpy.srrietveld)
        unique()
        -(in diffpy.srrietveld.utility)        		updatePlot()
        -(in Project)        		 
        -

        V

        		 - - - - - - - -
        verifyFitName()
        -(in Project)        		version
        -(in diffpy.srrietveld)        		 
           
        -

        W

        		 - - - - - - - - - - - - - - - - -
        write()
        -(in DataFile)        		writerow()
        -(in UnicodeWriter)        		writeToFile()
        -(in StrategyFile)
        writeDataFile()
        -(in DataFileConverter)        		writerows()
        -(in UnicodeWriter)        		 
        writeGSASStr()
        -(in DataFileConverter)        		writeStrateyFile()
        -(in Refinement)        		 
        -

        X

        		 - - - - - - - - - - - -
        XMLFile
        -(in diffpy.srrietveld.convert.xmlparser)        		xmlToDict()
        -(in XMLFile)        		xyeToFP()
        -(in DataFileConverter)
        xmlparser
        -(in diffpy.srrietveld.convert)        		xyeToChi()
        -(in DataFileConverter)        		 
        -

        _

        		 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        __id__
        -(in diffpy.srrietveld.addon.datafile)        		__init__()
        -(in GSASInstFile)        		__package__
        -(in diffpy.srrietveld.addon.datafile)
        __id__
        -(in diffpy.srrietveld.addon.debyefitting)        		__init__()
        -(in ListFileReader)        		__package__
        -(in diffpy.srrietveld.addon.debyefitting)
        __id__
        -(in diffpy.srrietveld.addon.structurefile)        		__init__()
        -(in StrategyFile)        		__package__
        -(in diffpy.srrietveld.addon.mcsampling)
        __id__
        -(in diffpy.srrietveld.applications)        		__init__()
        -(in BackgroundXML)        		__package__
        -(in diffpy.srrietveld.addon.structurefile)
        __id__
        -(in diffpy.srrietveld.applications.srhelp)        		__init__()
        -(in ExcludedRegionXML)        		__package__
        -(in diffpy.srrietveld.applications)
        __id__
        -(in diffpy.srrietveld.atom)        		__init__()
        -(in InstrumentXML)        		__package__
        -(in diffpy.srrietveld.applications.srhelp)
        __id__
        -(in diffpy.srrietveld.bugreport)        		__init__()
        -(in StrategyXML)        		__package__
        -(in diffpy.srrietveld.atom)
        __id__
        -(in diffpy.srrietveld.buildfit)        		__init__()
        -(in StructureXML)        		__package__
        -(in diffpy.srrietveld.bugreport)
        __id__
        -(in diffpy.srrietveld.convert.datafile)        		__init__()
        -(in XMLFile)        		__package__
        -(in diffpy.srrietveld.buildfit)
        __id__
        -(in diffpy.srrietveld.convert.gsasinstparser)        		__init__()
        -(in SrrConfigError)        		__package__
        -(in diffpy.srrietveld.convert)
        __id__
        -(in diffpy.srrietveld.convert.listfilereader)        		__init__()
        -(in SrrError)        		__package__
        -(in diffpy.srrietveld.convert.datafile)
        __id__
        -(in diffpy.srrietveld.convert.strategyfile)        		__init__()
        -(in SrrFileError)        		__package__
        -(in diffpy.srrietveld.convert.gsasinstparser)
        __id__
        -(in diffpy.srrietveld.convert.xmlparser)        		__init__()
        -(in SrrIOError)        		__package__
        -(in diffpy.srrietveld.convert.listfilereader)
        __id__
        -(in diffpy.srrietveld.exceptions)        		__init__()
        -(in SrrInputError)        		__package__
        -(in diffpy.srrietveld.convert.strategyfile)
        __id__
        -(in diffpy.srrietveld.export)        		__init__()
        -(in SrrRunTimeError)        		__package__
        -(in diffpy.srrietveld.convert.xmlparser)
        __id__
        -(in diffpy.srrietveld.fitrt)        		__init__()
        -(in SrrValueError)        		__package__
        -(in diffpy.srrietveld.exceptions)
        __id__
        -(in diffpy.srrietveld.objectinfo)        		__init__()
        -(in FitRT)        		__package__
        -(in diffpy.srrietveld.export)
        __id__
        -(in diffpy.srrietveld.paramnames)        		__init__()
        -(in ObjectInfo)        		__package__
        -(in diffpy.srrietveld.fitrt)
        __id__
        -(in diffpy.srrietveld.pattern)        		__init__()
        -(in ExcludedRegion)        		__package__
        -(in diffpy.srrietveld.objectinfo)
        __id__
        -(in diffpy.srrietveld.phase)        		__init__()
        -(in Pattern)        		__package__
        -(in diffpy.srrietveld.paramnames)
        __id__
        -(in diffpy.srrietveld.profile)        		__init__()
        -(in Phase)        		__package__
        -(in diffpy.srrietveld.pattern)
        __id__
        -(in diffpy.srrietveld.project)        		__init__()
        -(in Profile)        		__package__
        -(in diffpy.srrietveld.phase)
        __id__
        -(in diffpy.srrietveld.refinement)        		__init__()
        -(in Project)        		__package__
        -(in diffpy.srrietveld.profile)
        __id__
        -(in diffpy.srrietveld.version)        		__init__()
        -(in Refinement)        		__package__
        -(in diffpy.srrietveld.project)
        __id__
        -(in trunk.diffpy.srrietveld.applications.refine)        		__init__()
        -(in UTF8Recoder)        		__package__
        -(in diffpy.srrietveld.refinement)
        __init__()
        -(in DataFileConverter)        		__init__()
        -(in UnicodeReader)        		__package__
        -(in diffpy.srrietveld.utility)
        __init__()
        -(in DebyeFitting)        		__init__()
        -(in UnicodeWriter)        		__package__
        -(in diffpy.srrietveld.version)
        __init__()
        -(in MonteCarloSampling)        		__init__()
        -(in ReadInput)        		__str__()
        -(in DataFile)
        __init__()
        -(in StructureFileConverter)        		__iter__()
        -(in UTF8Recoder)        		__str__()
        -(in SrrError)
        __init__()
        -(in Atom)        		__iter__()
        -(in UnicodeReader)        		_LABELALIASES
        -(in diffpy.srrietveld.convert.listfilereader)
        __init__()
        -(in BuildFit)        		__package__
        -(in diffpy.srrietveld)        		 
        __init__()
        -(in DataFile)        		__package__
        -(in diffpy.srrietveld.addon)        		 
        -
        -

        - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:57 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/index.html b/static_root/doc/srrietveld/api/index.html deleted file mode 100644 index abb3c7cd..00000000 --- a/static_root/doc/srrietveld/api/index.html +++ /dev/null @@ -1,17 +0,0 @@ - - - - - diffpy.srrietveld - - - - - - - - - diff --git a/static_root/doc/srrietveld/api/module-tree.html b/static_root/doc/srrietveld/api/module-tree.html deleted file mode 100644 index 3f5ae358..00000000 --- a/static_root/doc/srrietveld/api/module-tree.html +++ /dev/null @@ -1,158 +0,0 @@ - - - - - Module Hierarchy - - - - - - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
          - - - -
        [frames] | no frames]
        -
        -
        - [ Module Hierarchy - | Class Hierarchy ] -

        -

        Module Hierarchy

        - - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:57 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/redirect.html b/static_root/doc/srrietveld/api/redirect.html deleted file mode 100644 index 89792e18..00000000 --- a/static_root/doc/srrietveld/api/redirect.html +++ /dev/null @@ -1,38 +0,0 @@ -Epydoc Redirect Page - - - - - - - - -

        Epydoc Auto-redirect page

        - -

        When javascript is enabled, this page will redirect URLs of -the form redirect.html#dotted.name to the -documentation for the object with the given fully-qualified -dotted name.

        -

         

        - - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld-module.html deleted file mode 100644 index 470c3cdb..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld-module.html +++ /dev/null @@ -1,29 +0,0 @@ - - - - - srrietveld - - - - - -

        Module srrietveld

        -
        -

        Variables

        - __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.addon-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.addon-module.html deleted file mode 100644 index 7b5e776b..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.addon-module.html +++ /dev/null @@ -1,29 +0,0 @@ - - - - - addon - - - - - -

        Module addon

        -
        -

        Variables

        - __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.addon.datafile-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.addon.datafile-module.html deleted file mode 100644 index 9274074a..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.addon.datafile-module.html +++ /dev/null @@ -1,35 +0,0 @@ - - - - - datafile - - - - - -

        Module datafile

        -
        -

        Classes

        - DataFileConverter

        Functions

        - createDataDict
        readFileList

        Variables

        - __id__
        __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.addon.debyefitting-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.addon.debyefitting-module.html deleted file mode 100644 index cb638c2e..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.addon.debyefitting-module.html +++ /dev/null @@ -1,35 +0,0 @@ - - - - - debyefitting - - - - - -

        Module debyefitting

        -
        -

        Classes

        - DebyeFitting

        Functions

        - adps
        debye

        Variables

        - __id__
        __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.addon.mcsampling-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.addon.mcsampling-module.html deleted file mode 100644 index d649b760..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.addon.mcsampling-module.html +++ /dev/null @@ -1,34 +0,0 @@ - - - - - mcsampling - - - - - -

        Module mcsampling

        -
        -

        Classes

        - MonteCarloSampling

        Functions

        - importFromGSASstd
        importFromGSAStimemap

        Variables

        - __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.addon.structurefile-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.addon.structurefile-module.html deleted file mode 100644 index 66783cec..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.addon.structurefile-module.html +++ /dev/null @@ -1,32 +0,0 @@ - - - - - structurefile - - - - - -

        Module structurefile

        -
        -

        Classes

        - StructureFileConverter

        Variables

        - __id__
        __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.applications-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.applications-module.html deleted file mode 100644 index b62417f4..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.applications-module.html +++ /dev/null @@ -1,30 +0,0 @@ - - - - - applications - - - - - -

        Module applications

        -
        -

        Variables

        - __id__
        __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.applications.srhelp-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.applications.srhelp-module.html deleted file mode 100644 index 3332fc8b..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.applications.srhelp-module.html +++ /dev/null @@ -1,33 +0,0 @@ - - - - - srhelp - - - - - -

        Module srhelp

        -
        -

        Functions

        - getHelp

        Variables

        - __id__
        __package__
        helpstring
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.atom-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.atom-module.html deleted file mode 100644 index 1aafd80c..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.atom-module.html +++ /dev/null @@ -1,33 +0,0 @@ - - - - - atom - - - - - -

        Module atom

        -
        -

        Classes

        - Atom

        Variables

        - PARAMNAMES
        __id__
        __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.bugreport-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.bugreport-module.html deleted file mode 100644 index 198e6dbd..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.bugreport-module.html +++ /dev/null @@ -1,38 +0,0 @@ - - - - - bugreport - - - - - -

        Module bugreport

        -
        -

        Functions

        - getFormData
        submitBugReport

        Variables

        - FORM_ENCPW
        FORM_REALM
        FORM_URL
        FORM_USER
        ROOT_URL
        __id__
        __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.buildfit-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.buildfit-module.html deleted file mode 100644 index edf82eba..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.buildfit-module.html +++ /dev/null @@ -1,32 +0,0 @@ - - - - - buildfit - - - - - -

        Module buildfit

        -
        -

        Classes

        - BuildFit

        Variables

        - __id__
        __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.convert-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.convert-module.html deleted file mode 100644 index 3c95838e..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.convert-module.html +++ /dev/null @@ -1,29 +0,0 @@ - - - - - convert - - - - - -

        Module convert

        -
        -

        Variables

        - __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.convert.datafile-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.convert.datafile-module.html deleted file mode 100644 index 43ce49ec..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.convert.datafile-module.html +++ /dev/null @@ -1,32 +0,0 @@ - - - - - datafile - - - - - -

        Module datafile

        -
        -

        Classes

        - DataFile

        Variables

        - __id__
        __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.convert.gsasinstparser-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.convert.gsasinstparser-module.html deleted file mode 100644 index dbd17559..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.convert.gsasinstparser-module.html +++ /dev/null @@ -1,32 +0,0 @@ - - - - - gsasinstparser - - - - - -

        Module gsasinstparser

        -
        -

        Classes

        - GSASInstFile

        Variables

        - __id__
        __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.convert.listfilereader-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.convert.listfilereader-module.html deleted file mode 100644 index b546c9b9..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.convert.listfilereader-module.html +++ /dev/null @@ -1,36 +0,0 @@ - - - - - listfilereader - - - - - -

        Module listfilereader

        -
        -

        Classes

        - CSVListFileReader
        ListFileReader

        Functions

        - readListFile
        resolveColumnLabel

        Variables

        - __id__
        __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.convert.strategyfile-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.convert.strategyfile-module.html deleted file mode 100644 index 50c730a6..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.convert.strategyfile-module.html +++ /dev/null @@ -1,32 +0,0 @@ - - - - - strategyfile - - - - - -

        Module strategyfile

        -
        -

        Classes

        - StrategyFile

        Variables

        - __id__
        __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.convert.xmlparser-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.convert.xmlparser-module.html deleted file mode 100644 index d0952aae..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.convert.xmlparser-module.html +++ /dev/null @@ -1,37 +0,0 @@ - - - - - xmlparser - - - - - -

        Module xmlparser

        -
        -

        Classes

        - BackgroundXML
        ExcludedRegionXML
        InstrumentXML
        StrategyXML
        StructureXML
        XMLFile

        Variables

        - __id__
        __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.exceptions-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.exceptions-module.html deleted file mode 100644 index 7479ef94..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.exceptions-module.html +++ /dev/null @@ -1,38 +0,0 @@ - - - - - exceptions - - - - - -

        Module exceptions

        -
        -

        Classes

        - SrrConfigError
        SrrError
        SrrFileError
        SrrIOError
        SrrInputError
        SrrRunTimeError
        SrrValueError

        Variables

        - __id__
        __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.export-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.export-module.html deleted file mode 100644 index 6e354075..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.export-module.html +++ /dev/null @@ -1,34 +0,0 @@ - - - - - export - - - - - -

        Module export

        -
        -

        Functions

        - exportCifFile
        exportDISAGLFile
        exportEngineFile

        Variables

        - __id__
        __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.fitrt-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.fitrt-module.html deleted file mode 100644 index 7d77bd14..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.fitrt-module.html +++ /dev/null @@ -1,32 +0,0 @@ - - - - - fitrt - - - - - -

        Module fitrt

        -
        -

        Classes

        - FitRT

        Variables

        - __id__
        __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.objectinfo-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.objectinfo-module.html deleted file mode 100644 index 49253c03..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.objectinfo-module.html +++ /dev/null @@ -1,34 +0,0 @@ - - - - - objectinfo - - - - - -

        Module objectinfo

        -
        -

        Classes

        - ObjectInfo

        Functions

        - setObjectInfo

        Variables

        - __id__
        __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.paramnames-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.paramnames-module.html deleted file mode 100644 index c5e5b1e5..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.paramnames-module.html +++ /dev/null @@ -1,31 +0,0 @@ - - - - - paramnames - - - - - -

        Module paramnames

        -
        -

        Variables

        - PARAMNAMES
        __id__
        __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.pattern-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.pattern-module.html deleted file mode 100644 index f0bb0159..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.pattern-module.html +++ /dev/null @@ -1,34 +0,0 @@ - - - - - pattern - - - - - -

        Module pattern

        -
        -

        Classes

        - ExcludedRegion
        Pattern

        Variables

        - PARAMNAMES
        __id__
        __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.phase-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.phase-module.html deleted file mode 100644 index 15a761d1..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.phase-module.html +++ /dev/null @@ -1,33 +0,0 @@ - - - - - phase - - - - - -

        Module phase

        -
        -

        Classes

        - Phase

        Variables

        - PARAMNAMES
        __id__
        __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.profile-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.profile-module.html deleted file mode 100644 index 651aa244..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.profile-module.html +++ /dev/null @@ -1,33 +0,0 @@ - - - - - profile - - - - - -

        Module profile

        -
        -

        Classes

        - Profile

        Variables

        - PARAMNAMES
        __id__
        __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.project-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.project-module.html deleted file mode 100644 index f957c44d..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.project-module.html +++ /dev/null @@ -1,36 +0,0 @@ - - - - - project - - - - - -

        Module project

        -
        -

        Classes

        - Project

        Functions

        - copyObjectData
        exportEngineObject
        importEngineObject

        Variables

        - __id__
        __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.refinement-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.refinement-module.html deleted file mode 100644 index da96b8d3..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.refinement-module.html +++ /dev/null @@ -1,33 +0,0 @@ - - - - - refinement - - - - - -

        Module refinement

        -
        -

        Classes

        - Refinement

        Variables

        - PARAMNAMES
        __id__
        __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.utility-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.utility-module.html deleted file mode 100644 index b5757faa..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.utility-module.html +++ /dev/null @@ -1,41 +0,0 @@ - - - - - utility - - - - - -

        Module utility

        -
        -

        Classes

        - UTF8Recoder
        UnicodeReader
        UnicodeWriter

        Functions

        - checkFormat
        getFileid
        importClass
        parseXYToList
        printDebugInfo
        printWarning
        unique

        Variables

        - __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.version-module.html b/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.version-module.html deleted file mode 100644 index 9c57d174..00000000 --- a/static_root/doc/srrietveld/api/toc-diffpy.srrietveld.version-module.html +++ /dev/null @@ -1,30 +0,0 @@ - - - - - version - - - - - -

        Module version

        -
        -

        Variables

        - __id__
        __package__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-everything.html b/static_root/doc/srrietveld/api/toc-everything.html deleted file mode 100644 index 733e1f4f..00000000 --- a/static_root/doc/srrietveld/api/toc-everything.html +++ /dev/null @@ -1,159 +0,0 @@ - - - - - Everything - - - - - -

        Everything

        -
        -

        All Classes

        - diffpy.srrietveld.addon.datafile.DataFileConverter
        diffpy.srrietveld.addon.debyefitting.DebyeFitting
        diffpy.srrietveld.addon.mcsampling.MonteCarloSampling
        diffpy.srrietveld.addon.structurefile.StructureFileConverter
        diffpy.srrietveld.atom.Atom
        diffpy.srrietveld.buildfit.BuildFit
        diffpy.srrietveld.convert.datafile.DataFile
        diffpy.srrietveld.convert.gsasinstparser.GSASInstFile
        diffpy.srrietveld.convert.listfilereader.CSVListFileReader
        diffpy.srrietveld.convert.listfilereader.ListFileReader
        diffpy.srrietveld.convert.strategyfile.StrategyFile
        diffpy.srrietveld.convert.xmlparser.BackgroundXML
        diffpy.srrietveld.convert.xmlparser.ExcludedRegionXML
        diffpy.srrietveld.convert.xmlparser.InstrumentXML
        diffpy.srrietveld.convert.xmlparser.StrategyXML
        diffpy.srrietveld.convert.xmlparser.StructureXML
        diffpy.srrietveld.convert.xmlparser.XMLFile
        diffpy.srrietveld.exceptions.SrrConfigError
        diffpy.srrietveld.exceptions.SrrError
        diffpy.srrietveld.exceptions.SrrFileError
        diffpy.srrietveld.exceptions.SrrIOError
        diffpy.srrietveld.exceptions.SrrInputError
        diffpy.srrietveld.exceptions.SrrRunTimeError
        diffpy.srrietveld.exceptions.SrrValueError
        diffpy.srrietveld.fitrt.FitRT
        diffpy.srrietveld.objectinfo.ObjectInfo
        diffpy.srrietveld.pattern.ExcludedRegion
        diffpy.srrietveld.pattern.Pattern
        diffpy.srrietveld.phase.Phase
        diffpy.srrietveld.profile.Profile
        diffpy.srrietveld.project.Project
        diffpy.srrietveld.refinement.Refinement
        diffpy.srrietveld.utility.UTF8Recoder
        diffpy.srrietveld.utility.UnicodeReader
        diffpy.srrietveld.utility.UnicodeWriter
        trunk.diffpy.srrietveld.applications.refine.ReadInput

        All Functions

        - diffpy.srrietveld.addon.datafile.createDataDict
        diffpy.srrietveld.addon.datafile.readFileList
        diffpy.srrietveld.addon.debyefitting.adps
        diffpy.srrietveld.addon.debyefitting.debye
        diffpy.srrietveld.addon.mcsampling.importFromGSASstd
        diffpy.srrietveld.addon.mcsampling.importFromGSAStimemap
        diffpy.srrietveld.applications.srhelp.getHelp
        diffpy.srrietveld.bugreport.getFormData
        diffpy.srrietveld.bugreport.submitBugReport
        diffpy.srrietveld.convert.listfilereader.readListFile
        diffpy.srrietveld.convert.listfilereader.resolveColumnLabel
        diffpy.srrietveld.export.exportCifFile
        diffpy.srrietveld.export.exportDISAGLFile
        diffpy.srrietveld.export.exportEngineFile
        diffpy.srrietveld.objectinfo.setObjectInfo
        diffpy.srrietveld.project.copyObjectData
        diffpy.srrietveld.project.exportEngineObject
        diffpy.srrietveld.project.importEngineObject
        diffpy.srrietveld.utility.checkFormat
        diffpy.srrietveld.utility.getFileid
        diffpy.srrietveld.utility.importClass
        diffpy.srrietveld.utility.parseXYToList
        diffpy.srrietveld.utility.printDebugInfo
        diffpy.srrietveld.utility.printWarning
        diffpy.srrietveld.utility.unique
        trunk.diffpy.srrietveld.applications.refine.applydata
        trunk.diffpy.srrietveld.applications.refine.main

        All Variables

        - diffpy.srrietveld.__package__
        diffpy.srrietveld.addon.__package__
        diffpy.srrietveld.addon.datafile.__id__
        diffpy.srrietveld.addon.datafile.__package__
        diffpy.srrietveld.addon.debyefitting.__id__
        diffpy.srrietveld.addon.debyefitting.__package__
        diffpy.srrietveld.addon.mcsampling.__package__
        diffpy.srrietveld.addon.structurefile.__id__
        diffpy.srrietveld.addon.structurefile.__package__
        diffpy.srrietveld.applications.__id__
        diffpy.srrietveld.applications.__package__
        diffpy.srrietveld.applications.srhelp.__id__
        diffpy.srrietveld.applications.srhelp.__package__
        diffpy.srrietveld.applications.srhelp.helpstring
        diffpy.srrietveld.atom.PARAMNAMES
        diffpy.srrietveld.atom.__id__
        diffpy.srrietveld.atom.__package__
        diffpy.srrietveld.bugreport.FORM_ENCPW
        diffpy.srrietveld.bugreport.FORM_REALM
        diffpy.srrietveld.bugreport.FORM_URL
        diffpy.srrietveld.bugreport.FORM_USER
        diffpy.srrietveld.bugreport.ROOT_URL
        diffpy.srrietveld.bugreport.__id__
        diffpy.srrietveld.bugreport.__package__
        diffpy.srrietveld.buildfit.__id__
        diffpy.srrietveld.buildfit.__package__
        diffpy.srrietveld.convert.__package__
        diffpy.srrietveld.convert.datafile.__id__
        diffpy.srrietveld.convert.datafile.__package__
        diffpy.srrietveld.convert.gsasinstparser.__id__
        diffpy.srrietveld.convert.gsasinstparser.__package__
        diffpy.srrietveld.convert.listfilereader.__id__
        diffpy.srrietveld.convert.listfilereader.__package__
        diffpy.srrietveld.convert.strategyfile.__id__
        diffpy.srrietveld.convert.strategyfile.__package__
        diffpy.srrietveld.convert.xmlparser.__id__
        diffpy.srrietveld.convert.xmlparser.__package__
        diffpy.srrietveld.exceptions.__id__
        diffpy.srrietveld.exceptions.__package__
        diffpy.srrietveld.export.__id__
        diffpy.srrietveld.export.__package__
        diffpy.srrietveld.fitrt.__id__
        diffpy.srrietveld.fitrt.__package__
        diffpy.srrietveld.objectinfo.__id__
        diffpy.srrietveld.objectinfo.__package__
        diffpy.srrietveld.paramnames.PARAMNAMES
        diffpy.srrietveld.paramnames.__id__
        diffpy.srrietveld.paramnames.__package__
        diffpy.srrietveld.pattern.PARAMNAMES
        diffpy.srrietveld.pattern.__id__
        diffpy.srrietveld.pattern.__package__
        diffpy.srrietveld.phase.PARAMNAMES
        diffpy.srrietveld.phase.__id__
        diffpy.srrietveld.phase.__package__
        diffpy.srrietveld.profile.PARAMNAMES
        diffpy.srrietveld.profile.__id__
        diffpy.srrietveld.profile.__package__
        diffpy.srrietveld.project.__id__
        diffpy.srrietveld.project.__package__
        diffpy.srrietveld.refinement.PARAMNAMES
        diffpy.srrietveld.refinement.__id__
        diffpy.srrietveld.refinement.__package__
        diffpy.srrietveld.utility.__package__
        diffpy.srrietveld.version.__id__
        diffpy.srrietveld.version.__package__
        trunk.diffpy.srrietveld.applications.refine.__id__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc-trunk.diffpy.srrietveld.applications.refine-module.html b/static_root/doc/srrietveld/api/toc-trunk.diffpy.srrietveld.applications.refine-module.html deleted file mode 100644 index 208a9f0b..00000000 --- a/static_root/doc/srrietveld/api/toc-trunk.diffpy.srrietveld.applications.refine-module.html +++ /dev/null @@ -1,34 +0,0 @@ - - - - - refine - - - - - -

        Module refine

        -
        -

        Classes

        - ReadInput

        Functions

        - applydata
        main

        Variables

        - __id__
        - - - - diff --git a/static_root/doc/srrietveld/api/toc.html b/static_root/doc/srrietveld/api/toc.html deleted file mode 100644 index 8c5385e8..00000000 --- a/static_root/doc/srrietveld/api/toc.html +++ /dev/null @@ -1,60 +0,0 @@ - - - - - Table of Contents - - - - - -

        Table of Contents

        -
        - Everything -
        -

        Modules

        - diffpy.srrietveld
        diffpy.srrietveld.addon
        diffpy.srrietveld.addon.datafile
        diffpy.srrietveld.addon.debyefitting
        diffpy.srrietveld.addon.mcsampling
        diffpy.srrietveld.addon.structurefile
        diffpy.srrietveld.applications
        diffpy.srrietveld.applications.srhelp
        diffpy.srrietveld.atom
        diffpy.srrietveld.bugreport
        diffpy.srrietveld.buildfit
        diffpy.srrietveld.convert
        diffpy.srrietveld.convert.datafile
        diffpy.srrietveld.convert.gsasinstparser
        diffpy.srrietveld.convert.listfilereader
        diffpy.srrietveld.convert.strategyfile
        diffpy.srrietveld.convert.xmlparser
        diffpy.srrietveld.exceptions
        diffpy.srrietveld.export
        diffpy.srrietveld.fitrt
        diffpy.srrietveld.objectinfo
        diffpy.srrietveld.paramnames
        diffpy.srrietveld.pattern
        diffpy.srrietveld.phase
        diffpy.srrietveld.profile
        diffpy.srrietveld.project
        diffpy.srrietveld.refinement
        diffpy.srrietveld.utility
        diffpy.srrietveld.version
        trunk.diffpy.srrietveld.applications.refine
        - - - - diff --git a/static_root/doc/srrietveld/api/trunk.diffpy.srrietveld.applications.refine-module.html b/static_root/doc/srrietveld/api/trunk.diffpy.srrietveld.applications.refine-module.html deleted file mode 100644 index b1b8fbf9..00000000 --- a/static_root/doc/srrietveld/api/trunk.diffpy.srrietveld.applications.refine-module.html +++ /dev/null @@ -1,224 +0,0 @@ - - - - - trunk.diffpy.srrietveld.applications.refine - - - - - - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
        - - Package trunk :: - Package diffpy :: - Package srrietveld :: - Package applications :: - Module refine - - - - - -
        [frames] | no frames]
        -
        - -

        Module refine

        source code

        -

        Launch Rietveld refinement and control the refinement.

        - - - - - - - - - - -
        - Classes
        -   - - ReadInput
        - Parse input options and read xml files -
        - - - - - - - - - - - - -
        - Functions
        -   - - - - - - -
        applydata(fit, - datadict)
        - Expand fit to a fit array, with different data set        		 - source code - -
        - -
        -   - - - - - - -
        main() - source code - -
        - -
        - - - - - - - - - -
        - Variables
        -   - - __id__ = "$Id: refine.py 5658 2010-07-09 20:05:34Z juhas $" -
        -

        Imports: - Project, - Manager, - SeqManager, - FitRT -


        - - - - - - -
        - Function Details
        - -
        - -
        - - -
        -

        applydata(fit, - datadict) -

        -         		source code  -
        - -

        Expand fit to a fit array, with different data set

        -

        fit -- a project fit object datadict -- a dictionary of data files

        -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - -
           Trees      Indices      Help    - - -
        diffpy.srrietveld
        - - - - - -
        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:57 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/trunk.diffpy.srrietveld.applications.refine-pysrc.html b/static_root/doc/srrietveld/api/trunk.diffpy.srrietveld.applications.refine-pysrc.html deleted file mode 100644 index d6f04162..00000000 --- a/static_root/doc/srrietveld/api/trunk.diffpy.srrietveld.applications.refine-pysrc.html +++ /dev/null @@ -1,388 +0,0 @@ - - - - - trunk.diffpy.srrietveld.applications.refine - - - - - - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
        - - - - - -
        - - Package trunk :: - Package diffpy :: - Package srrietveld :: - Package applications :: - Module refine - - - - - -
        [frames] | no frames]
        -
        -

        Source Code for Module trunk.diffpy.srrietveld.applications.refine

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2009 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Peng Tian 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14  """ Launch Rietveld refinement and control the refinement. """ 
- 15  __id__ = "$Id: refine.py 5658 2010-07-09 20:05:34Z juhas $" 
- 16   
- 17  from diffpy.srrietveld.convert.xmlparser import * 
- 18  from diffpy.srrietveld.project import Project 
- 19  from diffpy.srrietveld.manager import Manager, SeqManager 
- 20  from diffpy.srrietveld.fitrt import FitRT 
- 21   
-
         22 -class ReadInput: 
-
         23      """ Parse input options and read xml files """ 
-
         24 -    def __init__(self): 
-
         25          """ Initialization """ 
- 26          import sys 
- 27   
- 28          argv = sys.argv 
- 29          if len(argv) < 2: 
- 30              msg  = "Automatic Launched Refinement On Rietveld Refinement\n" 
- 31              msg += "\n%-10s -h  For Help"% (argv[0].split("/")[-1]) 
- 32              print msg 
- 33              sys.exit(1) 
- 34   
- 35          self.parseOptions() 
- 36          self.processInputs() 
- 37          self.run() 
- 38          return 
-
         39   
-
         40 -    def parseOptions(self): 
-
         41          """ Parse the input options """ 
- 42          from optparse import OptionParser 
- 43          import diffpy.srrietveld.applications.srhelp as srhelp 
- 44          # init 
- 45          optparser = OptionParser() 
- 46   
- 47          # define the input options, will be removed to a common place 
- 48          optparser.add_option("-i", "--instrument", dest="instrument", 
- 49                  help = srhelp.helpstring["instrument"]) 
- 50          optparser.add_option("-s", "--structure" , dest="structure", 
- 51                  help = srhelp.helpstring["structure"]) 
- 52          optparser.add_option("-d", "--data", dest="datafile", 
- 53                  help = srhelp.helpstring["data"]) 
- 54          optparser.add_option("-r", "--strategy", dest="strategyfile", 
- 55                  help = srhelp.helpstring["strategy"], default="calibrated") 
- 56          optparser.add_option("--bank", dest="banks", 
- 57                  help = srhelp.helpstring["bank"], default = "1") 
- 58          optparser.add_option("-b", "--background", dest="backgroundfile", 
- 59                  help = srhelp.helpstring["background"]) 
- 60          optparser.add_option("-e", "--engine", dest="engine", 
- 61                  help = srhelp.helpstring["engine"], default="fullprof") 
- 62          optparser.add_option("--excludedregion", dest = "excludedregionfile", 
- 63                  help = srhelp.helpstring["excludedregion"]) 
- 64          optparser.add_option("--infofile", dest="infofile", 
- 65                  help="Information file.  Information file contains 2 columns for" + 
- 66                  "datafile and value of environment quantity (e.g. temperature)") 
- 67          optparser.add_option("--datadirectory", dest="datadirectory", 
- 68                  help="Directory of source data file") 
- 69   
- 70          (options, args) = optparser.parse_args() 
- 71          self.options = options 
- 72          return 
-
         73   
-
         74 -    def processInputs(self): 
-
         75          """ Process input files and pass into dictionaries. """ 
- 76          from diffpy.srrietveld.utility import checkFormat, parseXYToList 
- 77          from diffpy.srrietveld.convert.gsasinstparser import GSASInstFile 
- 78          from diffpy.srrietveld.addon.datafile import DataFileConverter, createDataDict 
- 79          from diffpy.srrietveld.addon.strategyfile import StrategyFileParser 
- 80          from diffpy.srrietveld.addon.structurefile import StructureFileConverter 
- 81   
- 82          # Set engine and banklist 
- 83          self.engine = self.options.engine.lower() 
- 84          try: 
- 85              self.banklist = self.options.banks.split(",") 
- 86          except: 
- 87              self.banklist = self.options.banks 
- 88   
- 89          # Instrument info process 
- 90          instrumentfile = self.options.instrument 
- 91          instfileformat = checkFormat(instrumentfile) 
- 92          if instfileformat == "xml": 
- 93              instxml = InstrumentXML(instrumentfile) 
- 94              self.instdict = instxml.parseInstrumentXML() 
- 95          elif instfileformat in ["iparm", "prm"]: 
- 96              gsasinst = GSASInstFile(instrumentfile, self.banklist, self.engine) 
- 97              self.instdict = gsasinst.parseInstInfo() 
- 98          else: 
- 99              raise NotImplementedError 
-100   
-101          # Structure info process 
-102          structurefile = self.options.structure 
-103          strufileformat = checkFormat(structurefile) 
-104          if strufileformat == "xml": 
-105              struxml = StructureXML(structurefile) 
-106              self.strudict = struxml.parseStructureXML() 
-107          elif strufileformat == "cif": 
-108              strufile = StructureFileConverter(structurefile) 
-109              self.strudict = strufile.cifToDict() 
-110          else: 
-111              raise NotImplementedError 
-112   
-113          # Data file process 
-114          datafile = self.options.datafile 
-115          infofile = self.options.infofile 
-116          if datafile != None: 
-117              # single dataset refinement 
-118              self.datadict = {1:{"Name": datafile}} 
-119          elif infofile != None: 
-120              # multiple datasets refinement 
-121              datadirectory = self.options.datadirectory 
-122              self.datadict = createDataDict(infofile, datadirectory) 
-123          else: 
-124              raise NotImplementedError 
-125   
-126          for key, value in self.datadict.items(): 
-127              datafilename = value["Name"] 
-128              dataformat = checkFormat(datafilename) 
-129              datafileconverter = DataFileConverter(datafilename, instrumentfile, self.banklist) 
-130              for bankid in self.banklist: 
-131                  if self.engine == "gsas" and dataformat in ["dat", "chi"]: 
-132                      gsasfile = datafilename.split(dataformat)[0] + "gsa" 
-133                      datafileconverter.toGSASFile(datafilename, gsasfile, int(bankid)) 
-134                  elif self.engine == "gsas" and dataformat in ["gsa", "gda", "raw"]: 
-135                      datafileconverter.readGSASFile(datafilename, int(bankid)) 
-136                  elif self.engine == "fullprof" and dataformat in ["xye", "chi", "gsa", "gda", "raw"]: 
-137                      fullproffile = datafilename.split(dataformat)[0] + "dat" 
-138                      datafileconverter.toFPFile(datafilename, fullproffile, int(bankid)) 
-139                  else: 
-140                      raise NotImplementedError 
-141              self.datadict[key] = datafileconverter.datadict 
-142   
-143          # Refine Strategy file process 
-144          strategyfile = self.options.strategyfile 
-145          strategyfileformat = checkFormat(strategyfile) 
-146          if strategyfileformat == "txt": 
-147              strategytxt = StrategyFileParser(strategyfile) 
-148              self.strategy = strategytxt.parseTXTFormat() 
-149          else: 
-150              raise NotImplementedError 
-151   
-152          # Optional files: background and excludedregion: 
-153          backgroundfile = self.options.backgroundfile 
-154          if backgroundfile != None: 
-155              bkgdformat = checkFormat(backgroundfile) 
-156              if bkgdformat == "xml": 
-157                  bkgd = BackgroundXML(backgroundfile) 
-158                  bkgd.addToInstDict(self.instdict) 
-159              elif bkgdformat == "dat": 
-160                  self.bkgdlist = parseXYToList(backgroundfile) 
-161              else: 
-162                  raise NotImplementedError 
-163          excludedregionfile = self.options.excludedregionfile 
-164          if self.options.excludedregionfile != None: 
-165              exre = ExcludedRegionXML(excludedregionfile) 
-166              self.exredict = exre.xmlToDict(exre.exrexml) 
-167          return 
-
        168   
-
        169 -    def run(self): 
-
        170          """ Main controller of the refinement """ 
-171          from diffpy.srrietveld.buildfit import BuildFit 
-172          from diffpy.refinementdata.plot import backend 
-173   
-174          backend.use('wx') 
-175   
-176          # 1. Build Fit Object 
-177          sortedkeys = sorted(self.datadict.keys()) 
-178          buildfit = BuildFit(self.engine, self.strudict, self.instdict, 
-179                               self.datadict[sortedkeys[0]]) 
-180          srrfit = buildfit.buildFit() 
-181   
-182          # 2. Add optional background and excludedregion 
-183          if hasattr(self, "bkgdlist"): 
-184              buildfit.addBkgdPoints(srrfit, self.bkgdlist) 
-185          if hasattr(self, "exredict"): 
-186              buildfit.addExre(srrfit, self.exredict) 
-187   
-188          # 3. check whether fit is ready 
-189          srrfit.validate() 
-190   
-191          # force to rewrite everytime 
-192          project = Project('temp.srr','w') 
-193   
-194          # Also create a fitlist to build a manager 
-195          fitlist = [] 
-196   
-197          # 4. Refine 
-198          datafilenum = len(self.datadict.keys()) 
-199          if datafilenum > 1: 
-200              datalist = [] 
-201              fit = project.importEngineFit(srrfit, 'f1', shape = (datafilenum, )) 
-202              fitlist.append(fit) 
-203              datalist.append(self.datadict[sortedkeys[0]]) 
-204              i = 1 
-205              for v in sortedkeys[1:]: 
-206                  patterns = fit.fitdata.getObject("Pattern") 
-207                  pattern = patterns.getObject(0) 
-208                  text = pattern.get('Datafile') 
-209                  text[i] = self.datadict[v][1]["Name"] 
-210                  # also update: 
-211                  fitlist.append(FitRT(project, fit.fitdata, i)) 
-212                  i += 1 
-213                  datalist.append(self.datadict[v]) 
-214   
-215              project.plot(fit.fitdata, 0) 
-216              # Now create a manager to run the refinement. 
-217              manager = SeqManager(fitlist, datalist,  self.strategy) 
-218          else: 
-219              fitrt = project.importEngineFit(srrfit, 'f1') 
-220              fitlist.append(fitrt) 
-221              #project.plot(fitrt.fit) 
-222              manager = Manager(fitlist, self.strategy) 
-223          project.managers.append(manager) 
-224          # run fit 
-225          project.start() 
-226          backend.show() 
-227          # save project 
-228          project.close() 
-229          return 
-
        230   
-231   
-
        232 -def applydata(fit, datadict): 
-
        233      '''Expand fit to a fit array, with different data set 
-234   
-235      fit -- a project fit object 
-236      datadict -- a dictionary of data files 
-237      ''' 
-238      pass 
-
        239   
-
        240 -def main(): 
-
        241      ReadInput() 
-242      return 
-
        243   
-
        -
        - - - - - - - - - - - - - - - - -
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        diffpy.srrietveld
        - - - - - -
        - Generated by Epydoc 3.0.1 on Sun Aug 28 23:35:58 2011 - - http://epydoc.sourceforge.net -
        - - - - diff --git a/static_root/doc/srrietveld/api/trunk.diffpy.srrietveld.applications.refine.ReadInput-class.html b/static_root/doc/srrietveld/api/trunk.diffpy.srrietveld.applications.refine.ReadInput-class.html deleted file mode 100644 index d3b5b4d0..00000000 --- a/static_root/doc/srrietveld/api/trunk.diffpy.srrietveld.applications.refine.ReadInput-class.html +++ /dev/null @@ -1,189 +0,0 @@ - - - - - trunk.diffpy.srrietveld.applications.refine.ReadInput - - - - - - - - - - - - - - - - - - - - - -
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        - - Package trunk :: - Package diffpy :: - Package srrietveld :: - Package applications :: - Module refine :: - Class ReadInput - - - - - -
        [frames] | no frames]
        -
        - -

        Class ReadInput

        source code

        -

        Parse input options and read xml files

        - - - - - - - - - - - - - - - - - - - -
        - Instance Methods
        -   - - - - - - -
        __init__(self)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        parseOptions(self)
        - Parse the input options        		 - source code - -
        - -
        -   - - - - - - -
        processInputs(self)
        - Process input files and pass into dictionaries.        		 - source code - -
        - -
        -   - - - - - - -
        run(self)
        - Main controller of the refinement        		 - source code - -
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        -

        Navigation

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        Table Of Contents

        - - -

        This Page

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        -

        Welcome to SrRietveld’s documentation!

        -

        Welcome to the SrRietveld documentation!

        -
        -

        Disclamer

        -

        Copyright @copyright 2009, Trustees of Columbia University in the City of New -York, all rights reserved.

        -

        The program is distributed under the BSD License.

        -
          -

        • If you use this program to do productive scientific research that leads to publication, we ask that you acknowledge use of the program by citing the following paper in your publication:

          -
          -

          1. Wenduo Zhou, Peng Tian, Yingrui Shang, Christopher L. Farrow, P. Juhas and S. J. L. Billinge, -To be published.

          -
          -

          For more information please visit the project web-page: http://www.diffpy.org/ or email Prof. Simon Billinge at sb2896@@columbia.edu

          -
          • -

        • Current version of SrRietveld makes use of the FullProf and GSAS Rietveld refinement engine. If you use this program, as well as citing the paper above, please kindly acknowledge use of FullProf and/or GSAS by citing the following to instruction paper FullProf and/or GSAS:

          -
          -

          1. J. Rodriguez-Carvajal, Recent advances in magnetic structure determination by neutron -powder diffraction, Physica B, 192, 55-69 (1993). -#. Larson A C and von Dreele R B 2000 General structure analysis system(GSAS) -Los Alamos National Laboratory Report No. LAUR 87-748 unpublished

          -
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          • -
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        Redistribution

        -

        Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:

        -

        Redistributions of source code must retain the above disclarmer, this list of conditions and the following copyright notice.

        -

        Redistributions must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.

        -

        Neither the names of COLUMBIA UNIVERSITY, MICHIGAN STATE UNIVERSITY nor the names of their contributors may be used to endorse or promote products derived from this software without specific prior written permission.

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        -
        - © Copyright 2011, Peng Tian, Wenduo Zhou, Jiwu Liu, Yingrui Shang, Chris Farrow, Pavol Juhas, Emil Bozin, and Simon Billinge. - Last updated on Jul 11, 2011. - Created using Sphinx 0.6.4. -
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The 'nomargin' class is used to remove both the - * top and bottom margin (but not the left or right margin -- - * for lists, that would cause the bullets to disappear.) - */ -p.indent-wrapped-lines { padding: 0 0 0 7em; text-indent: -7em; - margin: 0; } -.nomargin-top { margin-top: 0; } -.nomargin { margin-top: 0; margin-bottom: 0; } - -/* HTML Log */ -div.log-block { padding: 0; margin: .5em 0 .5em 0; - background: #e8f0f8; color: #000000; - border: 1px solid #000000; } -div.log-error { padding: .1em .3em .1em .3em; margin: 4px; - background: #ffb0b0; color: #000000; - border: 1px solid #000000; } -div.log-warning { padding: .1em .3em .1em .3em; margin: 4px; - background: #ffffb0; color: #000000; - border: 1px solid #000000; } -div.log-info { padding: .1em .3em .1em .3em; margin: 4px; - background: #b0ffb0; color: #000000; - border: 1px solid #000000; } -h2.log-hdr { background: #70b0ff; color: #000000; - margin: 0; padding: 0em 0.5em 0em 0.5em; - border-bottom: 1px solid #000000; font-size: 110%; } -p.log { font-weight: bold; margin: .5em 0 .5em 0; } -tr.opt-changed { color: #000000; font-weight: bold; } -tr.opt-default { color: #606060; } -pre.log { margin: 0; padding: 0; padding-left: 1em; } diff --git a/static_root/doc/srrietveld/developers/epydoc.js b/static_root/doc/srrietveld/developers/epydoc.js deleted file mode 100644 index 08ffb9fb..00000000 --- a/static_root/doc/srrietveld/developers/epydoc.js +++ /dev/null @@ -1,280 +0,0 @@ -function toggle_private() { - // Search for any private/public links on this page. Store - // their old text in "cmd," so we will know what action to - // take; and change their text to the opposite action. - var cmd = "?"; - var elts = document.getElementsByTagName("a"); - for(var i=0; i...
        "; - elt.innerHTML = s; - } -} - -function toggle(id) { - elt = document.getElementById(id+"-toggle"); - if (elt.innerHTML == "-") - collapse(id); - else - expand(id); - return false; -} - -function highlight(id) { - var elt = document.getElementById(id+"-def"); - if (elt) elt.className = "py-highlight-hdr"; - var elt = document.getElementById(id+"-expanded"); - if (elt) elt.className = "py-highlight"; - var elt = document.getElementById(id+"-collapsed"); - if (elt) elt.className = "py-highlight"; -} - -function num_lines(s) { - var n = 1; - var pos = s.indexOf("\n"); - while ( pos > 0) { - n += 1; - pos = s.indexOf("\n", pos+1); - } - return n; -} - -// Collapse all blocks that mave more than `min_lines` lines. -function collapse_all(min_lines) { - var elts = document.getElementsByTagName("div"); - for (var i=0; i 0) - if (elt.id.substring(split, elt.id.length) == "-expanded") - if (num_lines(elt.innerHTML) > min_lines) - collapse(elt.id.substring(0, split)); - } -} - -function expandto(href) { - var start = href.indexOf("#")+1; - if (start != 0 && start != href.length) { - if (href.substring(start, href.length) != "-") { - collapse_all(4); - pos = href.indexOf(".", start); - while (pos != -1) { - var id = href.substring(start, pos); - expand(id); - pos = href.indexOf(".", pos+1); - } - var id = href.substring(start, href.length); - expand(id); - highlight(id); - } - } -} - -function kill_doclink(id) { - var parent = document.getElementById(id); - parent.removeChild(parent.childNodes.item(0)); -} -function auto_kill_doclink(ev) { - if (!ev) var ev = window.event; - if (!this.contains(ev.toElement)) { - var parent = document.getElementById(this.parentID); - parent.removeChild(parent.childNodes.item(0)); - } -} - -function doclink(id, name, targets_id) { - var elt = document.getElementById(id); - - // If we already opened the box, then destroy it. - // (This case should never occur, but leave it in just in case.) - if (elt.childNodes.length > 1) { - elt.removeChild(elt.childNodes.item(0)); - } - else { - // The outer box: relative + inline positioning. - var box1 = document.createElement("div"); - box1.style.position = "relative"; - box1.style.display = "inline"; - box1.style.top = 0; - box1.style.left = 0; - - // A shadow for fun - var shadow = document.createElement("div"); - shadow.style.position = "absolute"; - shadow.style.left = "-1.3em"; - shadow.style.top = "-1.3em"; - shadow.style.background = "#404040"; - - // The inner box: absolute positioning. - var box2 = document.createElement("div"); - box2.style.position = "relative"; - box2.style.border = "1px solid #a0a0a0"; - box2.style.left = "-.2em"; - box2.style.top = "-.2em"; - box2.style.background = "white"; - box2.style.padding = ".3em .4em .3em .4em"; - box2.style.fontStyle = "normal"; - box2.onmouseout=auto_kill_doclink; - box2.parentID = id; - - // Get the targets - var targets_elt = document.getElementById(targets_id); - var targets = targets_elt.getAttribute("targets"); - var links = ""; - target_list = targets.split(","); - for (var i=0; i" + - target[0] + ""; - } - - // Put it all together. - elt.insertBefore(box1, elt.childNodes.item(0)); - //box1.appendChild(box2); - box1.appendChild(shadow); - shadow.appendChild(box2); - box2.innerHTML = - "Which "+name+" do you want to see documentation for?" + - ""; - } - return false; -} - -function get_anchor() { - var href = location.href; - var start = href.indexOf("#")+1; - if ((start != 0) && (start != href.length)) - return href.substring(start, href.length); - } -function redirect_url(dottedName) { - // Scan through each element of the "pages" list, and check - // if "name" matches with any of them. - for (var i=0; i-m" or "-c"; - // extract the portion & compare it to dottedName. - var pagename = pages[i].substring(0, pages[i].length-2); - if (pagename == dottedName.substring(0,pagename.length)) { - - // We've found a page that matches `dottedName`; - // construct its URL, using leftover `dottedName` - // content to form an anchor. - var pagetype = pages[i].charAt(pages[i].length-1); - var url = pagename + ((pagetype=="m")?"-module.html": - "-class.html"); - if (dottedName.length > pagename.length) - url += "#" + dottedName.substring(pagename.length+1, - dottedName.length); - return url; - } - } - } diff --git a/static_root/doc/srrietveld/developers/frames.html b/static_root/doc/srrietveld/developers/frames.html deleted file mode 100644 index 0a3b35ff..00000000 --- a/static_root/doc/srrietveld/developers/frames.html +++ /dev/null @@ -1,17 +0,0 @@ - - - - - API Documentation - - - - - - - - - diff --git a/static_root/doc/srrietveld/developers/help.html b/static_root/doc/srrietveld/developers/help.html deleted file mode 100644 index da0eacb8..00000000 --- a/static_root/doc/srrietveld/developers/help.html +++ /dev/null @@ -1,268 +0,0 @@ - - - - - Help - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
          - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        API Documentation

        - -

        This document contains the API (Application Programming Interface) -documentation for this project. Documentation for the Python -objects defined by the project is divided into separate pages for each -package, module, and class. The API documentation also includes two -pages containing information about the project as a whole: a trees -page, and an index page.

        - -

        Object Documentation

        - -

        Each Package Documentation page contains:

        -
          -
        • A description of the package.
          • -
        • A list of the modules and sub-packages contained by the - package.
          • -
        • A summary of the classes defined by the package.
          • -
        • A summary of the functions defined by the package.
          • -
        • A summary of the variables defined by the package.
          • -
        • A detailed description of each function defined by the - package.
          • -
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          • -
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        Each Module Documentation page contains:

        -
          -
        • A description of the module.
          • -
        • A summary of the classes defined by the module.
          • -
        • A summary of the functions defined by the module.
          • -
        • A summary of the variables defined by the module.
          • -
        • A detailed description of each function defined by the - module.
          • -
        • A detailed description of each variable defined by the - module.
          • -
        - -

        Each Class Documentation page contains:

        -
          -
        • A class inheritance diagram.
          • -
        • A list of known subclasses.
          • -
        • A description of the class.
          • -
        • A summary of the methods defined by the class.
          • -
        • A summary of the instance variables defined by the class.
          • -
        • A summary of the class (static) variables defined by the - class.
          • -
        • A detailed description of each method defined by the - class.
          • -
        • A detailed description of each instance variable defined by the - class.
          • -
        • A detailed description of each class (static) variable defined - by the class.
          • -
        - -

        Project Documentation

        - -

        The Trees page contains the module and class hierarchies:

        -
          -
        • The module hierarchy lists every package and module, with - modules grouped into packages. At the top level, and within each - package, modules and sub-packages are listed alphabetically.
          • -
        • The class hierarchy lists every class, grouped by base - class. If a class has more than one base class, then it will be - listed under each base class. At the top level, and under each base - class, classes are listed alphabetically.
          • -
        - -

        The Index page contains indices of terms and - identifiers:

        -
          -
        • The term index lists every term indexed by any object's - documentation. For each term, the index provides links to each - place where the term is indexed.
          • -
        • The identifier index lists the (short) name of every package, - module, class, method, function, variable, and parameter. For each - identifier, the index provides a short description, and a link to - its documentation.
          • -
        - -

        The Table of Contents

        - -

        The table of contents occupies the two frames on the left side of -the window. The upper-left frame displays the project -contents, and the lower-left frame displays the module -contents:

        - - - - - - - - - -
        - Project
        Contents
        ...        		 - API
        Documentation
        Frame


        -
        - Module
        Contents
         
        ...
          -

        - -

        The project contents frame contains a list of all packages -and modules that are defined by the project. Clicking on an entry -will display its contents in the module contents frame. Clicking on a -special entry, labeled "Everything," will display the contents of -the entire project.

        - -

        The module contents frame contains a list of every -submodule, class, type, exception, function, and variable defined by a -module or package. Clicking on an entry will display its -documentation in the API documentation frame. Clicking on the name of -the module, at the top of the frame, will display the documentation -for the module itself.

        - -

        The "frames" and "no frames" buttons below the top -navigation bar can be used to control whether the table of contents is -displayed or not.

        - -

        The Navigation Bar

        - -

        A navigation bar is located at the top and bottom of every page. -It indicates what type of page you are currently viewing, and allows -you to go to related pages. The following table describes the labels -on the navigation bar. Note that not some labels (such as -[Parent]) are not displayed on all pages.

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        LabelHighlighted when...Links to...
        [Parent](never highlighted) the parent of the current package
        [Package]viewing a packagethe package containing the current object -
        [Module]viewing a modulethe module containing the current object -
        [Class]viewing a class the class containing the current object
        [Trees]viewing the trees page the trees page
        [Index]viewing the index page the index page
        [Help]viewing the help page the help page
        - -

        The "show private" and "hide private" buttons below -the top navigation bar can be used to control whether documentation -for private objects is displayed. Private objects are usually defined -as objects whose (short) names begin with a single underscore, but do -not end with an underscore. For example, "_x", -"__pprint", and "epydoc.epytext._tokenize" -are private objects; but "re.sub", -"__init__", and "type_" are not. However, -if a module defines the "__all__" variable, then its -contents are used to decide which objects are private.

        - -

        A timestamp below the bottom navigation bar indicates when each -page was last updated.

        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:21 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/identifier-index.html b/static_root/doc/srrietveld/developers/identifier-index.html deleted file mode 100644 index b49143a5..00000000 --- a/static_root/doc/srrietveld/developers/identifier-index.html +++ /dev/null @@ -1,2531 +0,0 @@ - - - - - Identifier Index - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
          - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -
        -

        Identifier Index

        -        		 -[ - A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - Q - R - S - T - U - V - W - X - Y - Z - _ -] -
        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

        A

        		 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        AbsorptionCorrectionGuide
        -(in srrietveld.refineguides)        		addInfoOfStep()
        -(in RefineHistory)        		AtomGuide
        -(in srrietveld.refineguides)
        AbsorptionCorrectionRefineSetup
        -(in srrietveld.refinesetup)        		addSkipStep()
        -(in RefineHistory)        		atominfo
        -(in srrietveld)
        activeVariable()
        -(in srrietveld.utilrefineguide)        		ADPGuide
        -(in srrietveld.refineguides)        		AtomNameDict
        -(in AtomDicts)
        addAtom()
        -(in srrietveld.midscript)        		All
        -(in srrietveld.enduserscripts)        		AtomNumberDict
        -(in AtomDicts)
        addComponent()
        -(in srrietveld.midscript)        		all_setups
        -(in MarSetup)        		autobackgroundselect
        -(in srrietveld)
        addExcludedRegion()
        -(in ConstWavelengthInstrument)        		AnisotropicADPRefineSetup
        -(in srrietveld.refinesetup)        		autoBackgroundSelection()
        -(in srrietveld.autobackgroundselect)
        addExcludedRegion()
        -(in Measurement)        		AtomDicts
        -(in srrietveld.atominfo)        		auxiliary
        -(in srrietveld)
        addExcludedRegion()
        -(in TOFMeasurementXMLGenerator)        		AtomFractionalCoordinateRefineSetup
        -(in srrietveld.refinesetup)        		 
        -

        B

        		 - - - - - - - -
        BackgroundGuide
        -(in srrietveld.refineguides)        		BackgroundProcess
        -(in srrietveld.utilbackground)        		 
           
        -

        C

        		 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        caldDiff()
        -(in srrietveld.utilplot)        		checkMust()
        -(in srrietveld.midscript)        		convertCHIDataFileFormatGSAS()
        -(in srrietveld.uisupport)
        CalibratedLebailRefineStrategy
        -(in srrietveld.refinestrategy)        		ChiFile
        -(in srrietveld.mar_utilities)        		convertChiToGSAS()
        -(in srrietveld.datafileconverter)
        CalibratedRietveldRefineStrategy
        -(in srrietveld.refinestrategy)        		CifRW
        -(in srrietveld.modelrw)        		convertChiToXYSigma()
        -(in srrietveld.datafileconverter)
        CalibratedTOFRietveldRefineStrategy
        -(in srrietveld.refinestrategy)        		cifToxml
        -(in srrietveld.xmlconvertor)        		convertDataFilesFormat()
        -(in srrietveld.uisupport)
        CalibratedXrayFullProfRefineStrategy
        -(in srrietveld.refinestrategy)        		CloseRietveldRefineStrategy
        -(in srrietveld.refinestrategy)        		convertDataFormat()
        -(in srrietveld.uisupport)
        CalibratedXrayGSASRefineStrategy
        -(in srrietveld.refinestrategy)        		ColorList
        -(in PlotInfo2D)        		convertDto2THETA()
        -(in srrietveld.utilunits)
        CalibratedXrayRietveldRefineStrategy
        -(in srrietveld.refinestrategy)        		ColorTable
        -(in PlotMatLib)        		convertDtoTOF()
        -(in srrietveld.utilunits)
        CalibrationTOFFullProfRefineStrategy
        -(in srrietveld.refinestrategy)        		CONST_ARCDEGREE
        -(in srrietveld.utilunits)        		convertQbackground()
        -(in srrietveld.utilbackground)
        CalibrationTOFGSASRefineStrategy
        -(in srrietveld.refinestrategy)        		CONST_DEGREEARC
        -(in srrietveld.utilunits)        		convertTOFtoD()
        -(in srrietveld.utilunits)
        CalibrationTOFRietveldRefineStrategy
        -(in srrietveld.refinestrategy)        		ConstantWaveSymmetricPeakShapeRefineSetup
        -(in srrietveld.refinesetup)        		convertXYSigmaToChi()
        -(in srrietveld.datafileconverter)
        CalibrationXrayFullProfRefineStrategy
        -(in srrietveld.refinestrategy)        		ConstWavelengthInstrument
        -(in srrietveld.instrument)        		Cubic()
        -(in srrietveld.midscript)
        CalibrationXrayGSASRefineStrategy
        -(in srrietveld.refinestrategy)        		continueUponBreak()
        -(in DataManager)        		CubicRefineSetup
        -(in srrietveld.refinesetup)
        CalibrationXrayRietveldRefineStrategy
        -(in srrietveld.refinestrategy)        		convert2THETAtoD()
        -(in srrietveld.utilunits)        		CystalStructureNameDict
        -(in srrietveld.spacegroupinfo)
        checkExternalPackage()
        -(in srrietveld.viewer3d)        		convertCHIDataFileFormatFullProf()
        -(in srrietveld.uisupport)        		 
        -

        D

        		 - - - - - - - - - - - - - - - - -
        datafileconverter
        -(in srrietveld)        		datamanager
        -(in srrietveld)        		define()
        -(in MarSetup)
        dataFileFormat()
        -(in srrietveld.datafileconverter)        		DataManager
        -(in srrietveld.datamanager)        		defineMarSetup()
        -(in srrietveld.mar_utilities)
        DataFileParser
        -(in srrietveld.datafileconverter)        		dataprocessnpdf
        -(in srrietveld)        		duplicateModel()
        -(in srrietveld.datamanager)
        -

        E

        		 - - - - - - - - - - - - - - - - - - - - - -
        enduserscripts
        -(in srrietveld)        		ExpDecayGuide
        -(in srrietveld.refineguides)        		exportModel()
        -(in ModelRW)
        ETA
        -(in srrietveld.enduserscripts)        		exportColumnFiles()
        -(in srrietveld.utilplot)        		exportRawGSA()
        -(in srrietveld.dataprocessnpdf)
        ETA
        -(in srrietveld.refineguides)        		exportData()
        -(in DataFileParser)        		exportStdDictionary()
        -(in RefineStrategyXMLParser)
        ExcludedRegionXMLGenerator
        -(in srrietveld.xmlgenerator)        		exportFullprof()
        -(in NPDFData)        		exportXML()
        -(in XMLGenerator)
        -

        F

        		 - - - - - - - - - - - - - - - - -
        file
        -(in SpecMarExposure)        		fracCoords
        -(in srrietveld.enduserscripts)        		fromConfigStr()
        -(in MarSetup)
        filterBackgroundPoints()
        -(in srrietveld.autobackgroundselect)        		FractionalCoordinateGuide
        -(in srrietveld.refineguides)        		FullProfFreeFormatParser
        -(in srrietveld.datafileconverter)
        fit2dIntegrateMacro()
        -(in MarSetup)        		fromConfigFileObject()
        -(in MarSetup)        		 
        -

        G

        		 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        garbageCheck()
        -(in srrietveld.monitormem)        		genRietveldComponent()
        -(in ThermalNeutronTOFInstrument)        		getMeasureRange()
        -(in Measurement)
        GEMDataParser
        -(in srrietveld.datafileconverter)        		genRietveldComponent()
        -(in XrayInstrument)        		getName()
        -(in Instrument)
        GEMMeasurementXMLGenerator
        -(in srrietveld.xmlgenerator)        		genScaleRefineSetup()
        -(in srrietveld.utilrefineguide)        		getNewVariablesList()
        -(in RefineHistory)
        genAbsorptionCorrectionRefineSetup()
        -(in srrietveld.utilrefineguide)        		genStandardBackground()
        -(in srrietveld.utilbackground)        		getNumParameters()
        -(in RefineSetup)
        genADPRefineSetup()
        -(in srrietveld.utilrefineguide)        		genStartFit()
        -(in SeqRefineController)        		getNumRefineGuideSteps()
        -(in RefineStrategy)
        genAtomFractionalPositionSetup()
        -(in srrietveld.utilrefineguide)        		genTOFExpDecayRefinement()
        -(in srrietveld.utilrefineguide)        		getNumRefineSteps()
        -(in RefineGuide)
        genBackground()
        -(in srrietveld.utilbackground)        		genTOFInstrument()
        -(in srrietveld.gsasfileparser)        		getNumRefineSteps()
        -(in LatticeRefineSetup)
        genBackgroundRefineSetup()
        -(in srrietveld.utilrefineguide)        		genVarName()
        -(in srrietveld.utilrefineguide)        		getNumRefineSteps()
        -(in RefineSetup)
        genDataProperty()
        -(in InstrumentXMLGenerator)        		genWavelengthRefineSetup()
        -(in srrietveld.utilrefineguide)        		getNumStages()
        -(in RefineGuide)
        generateRefineSetup()
        -(in ADPGuide)        		genXMLGenerator()
        -(in srrietveld.utilinstrument)        		getNumSteps()
        -(in MultiStepRefineManager)
        generateRefineSetup()
        -(in AbsorptionCorrectionGuide)        		genZeroRefineSetup()
        -(in srrietveld.utilrefineguide)        		getParameter()
        -(in SeqRefineController)
        generateRefineSetup()
        -(in BackgroundGuide)        		getAtomNumberByName()
        -(in srrietveld.atominfo)        		getPatterns()
        -(in srrietveld.midscript)
        generateRefineSetup()
        -(in ExpDecayGuide)        		getAttributeValue()
        -(in srrietveld.xmlinterface)        		getPrevStepRefinedVariables()
        -(in MultiStepRefineManager)
        generateRefineSetup()
        -(in FractionalCoordinateGuide)        		getBackgroundDictionary()
        -(in Measurement)        		getProcessID()
        -(in srrietveld.refinemanager)
        generateRefineSetup()
        -(in OccupancyGuide)        		getBackgroundType()
        -(in Instrument)        		getRAPDFInstrument()
        -(in srrietveld.utilrapdf)
        generateRefineSetup()
        -(in PeakShapeGuide)        		getBackgroundType()
        -(in Measurement)        		getRefineAllConfig()
        -(in AtomGuide)
        generateRefineSetup()
        -(in RefineGuide)        		getBankInfoDict()
        -(in TOFInstrument)        		getRefineAllConfig()
        -(in InstrumentGuide)
        generateRefineSetup()
        -(in ScaleGuide)        		getBankInfoDict()
        -(in ThermalNeutronTOFInstrument)        		getRefineAllConfig()
        -(in LatticeGuide)
        generateRefineSetup()
        -(in WavelengthGuide)        		getBankNumber()
        -(in Measurement)        		getRefineAllConfig()
        -(in MeasurementGuide)
        generateRefineSetup()
        -(in ZeroGuide)        		getBankNumbersList()
        -(in TOFInstrument)        		getRefineAllConfig()
        -(in RefineGuide)
        generateRefineSetupDictionary()
        -(in RefineGuide)        		getBankNumbersList()
        -(in ThermalNeutronTOFInstrument)        		getRefineAllConfig()
        -(in SampleGuide)
        generateXML()
        -(in cifToxml)        		getBestStep()
        -(in MultiStepRefineManager)        		getRefinedVariablesList()
        -(in RefineGuide)
        generateXML()
        -(in ExcludedRegionXMLGenerator)        		getColor()
        -(in PlotInfo2D)        		getRefineGuidesOfStep()
        -(in RefineStrategy)
        generateXML()
        -(in InstrumentXMLGenerator)        		getComponents()
        -(in InstrumentGuide)        		getRefineGuidesRemovedOfStep()
        -(in RefineStrategy)
        generateXML()
        -(in MeasurementXMLGenerator)        		getComponents()
        -(in ScaleGuide)        		getRefineInfo()
        -(in RefineSetup)
        generateXML()
        -(in ModelXMLGenerator)        		getCrystalSystemFromSpaceGroup()
        -(in srrietveld.spacegroupinfo)        		getRefinementStrategy()
        -(in srrietveld.uisupport)
        generateXML()
        -(in POWGENMeasurementXMLGenerator)        		getCurrentFit()
        -(in MultiStepRefineManager)        		getRefineStrategy()
        -(in MultiStepRefineManager)
        generateXML()
        -(in RefineStrategyXMLGenerator)        		getDataFileName()
        -(in Measurement)        		getRefineTypeOfStep()
        -(in RefineStrategy)
        generateXML()
        -(in SeqFitRecordXMLGenerator)        		getDataFilesList()
        -(in DataManager)        		getRefineTypeOfStep()
        -(in UserDefinedRefineStrategy)
        generateXML()
        -(in TOFMeasurementXMLGenerator)        		getDataFromColumnFile()
        -(in srrietveld.io)        		getResidueValues()
        -(in RefineHistory)
        generateXML()
        -(in TOFXMLGenerator)        		getEffectiveSetup()
        -(in MarSetup)        		getRietveldEngineModule()
        -(in RietveldEngine)
        generateXML()
        -(in ThermalNeutronTOFXMLGenerator)        		getEnvironParameterName()
        -(in SeqRefineController)        		getRietveldObjects()
        -(in ADPGuide)
        generateXML()
        -(in XMLGenerator)        		getEnvironParameterValues()
        -(in SeqRefineController)        		getRietveldObjects()
        -(in AbsorptionCorrectionGuide)
        generateXML()
        -(in XrayInstrumentXMLGenerator)        		getExcludedRegions()
        -(in ConstWavelengthInstrument)        		getRietveldObjects()
        -(in BackgroundGuide)
        genExcludedRegion()
        -(in InstrumentXMLGenerator)        		getExcludedRegions()
        -(in TOFInstrument)        		getRietveldObjects()
        -(in ExpDecayGuide)
        genFileListFromInfoFile()
        -(in srrietveld.uisupport)        		getExcludedRegions()
        -(in Measurement)        		getRietveldObjects()
        -(in FractionalCoordinateGuide)
        genFileListFromTemplate()
        -(in srrietveld.uisupport)        		getFit()
        -(in SeqRefineController)        		getRietveldObjects()
        -(in MeasurementGuide)
        genFileParser()
        -(in TOFInstrument)        		getFitDetailOfStep()
        -(in MultiStepRefineManager)        		getRietveldObjects()
        -(in OccupancyGuide)
        genFit()
        -(in srrietveld.midscript)        		getFitOfStep()
        -(in MultiStepRefineManager)        		getRietveldObjects()
        -(in PeakShapeGuide)
        genInstrument()
        -(in srrietveld.utilinstrument)        		getGuideConfig()
        -(in AtomGuide)        		getRietveldObjects()
        -(in ScaleGuide)
        genLattice()
        -(in srrietveld.midscript)        		getGuideConfig()
        -(in InstrumentGuide)        		getRietveldObjects()
        -(in WavelengthGuide)
        genLatticeRefineSetup()
        -(in srrietveld.utilrefineguide)        		getGuideConfig()
        -(in LatticeGuide)        		getRietveldObjects()
        -(in ZeroGuide)
        genMeasurement()
        -(in Instrument)        		getGuideConfig()
        -(in MeasurementGuide)        		getSolutionSeqXML()
        -(in srrietveld.utilsequentialrefine)
        genMeasurement()
        -(in NeutronCWInstrument)        		getGuideConfig()
        -(in RefineGuide)        		GetSpaceGroup()
        -(in srrietveld.viewer3d)
        genMeasurement()
        -(in TOFInstrument)        		getGuideConfig()
        -(in SampleGuide)        		getSpecMarExposures()
        -(in srrietveld.mar_utilities)
        genMeasurement()
        -(in ThermalNeutronTOFInstrument)        		getHistory()
        -(in MultiStepRefineManager)        		getStructure()
        -(in StructureXMLParser)
        genMeasurement()
        -(in XrayInstrument)        		getHomeValueIndex()
        -(in srrietveld.auxiliary)        		getStructureInformation()
        -(in srrietveld.xmlinterface)
        genPeakProfile()
        -(in srrietveld.midscript)        		getInfoTupleFromParValue()
        -(in SeqRefineController)        		getTuple()
        -(in srrietveld.phasescript)
        genPeakShapeRefineSetup()
        -(in srrietveld.utilrefineguide)        		getInstrument()
        -(in srrietveld.instrument)        		getType()
        -(in Instrument)
        genPhaseCIF()
        -(in srrietveld.phasescript)        		getInstrument()
        -(in InstrumentXMLParser)        		getValueIndex()
        -(in srrietveld.auxiliary)
        genPhaseDict()
        -(in srrietveld.phasescript)        		getInstrumentInformation()
        -(in srrietveld.xmlinterface)        		getWaveLength()
        -(in ConstWavelengthInstrument)
        genRAPDFXMLTemplate()
        -(in srrietveld.uisupport)        		getLabel()
        -(in PlotInfo2D)        		getX()
        -(in PlotInfo2D)
        genRietveldComponent()
        -(in ConstWavelengthInstrument)        		getLatticeInGroup()
        -(in srrietveld.utilrefineguide)        		getXMLNodeAttributes()
        -(in srrietveld.xmlinterface)
        genRietveldComponent()
        -(in Instrument)        		getLineStyle()
        -(in PlotInfo2D)        		getY()
        -(in PlotInfo2D)
        genRietveldComponent()
        -(in NeutronCWInstrument)        		getMarkStyle()
        -(in PlotInfo2D)        		gsasfileparser
        -(in srrietveld)
        genRietveldComponent()
        -(in TOFInstrument)        		getMeasurements()
        -(in MeasurementXMLParser)        		guideDescription
        -(in RefineGuide)
        -

        H

        		 - - - - - - - -
        HexagonalRefineSetup
        -(in srrietveld.refinesetup)        		  
           
        -

        I

        		 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        importCIF()
        -(in srrietveld.modelrw)        		initCWNeutronPattern()
        -(in srrietveld.midscript)        		initThermalTOFPattern()
        -(in srrietveld.midscript)
        importData()
        -(in DataFileParser)        		initCWXrayPattern()
        -(in srrietveld.midscript)        		initTOFPattern()
        -(in srrietveld.midscript)
        importExcludedRegionFile()
        -(in srrietveld.xmlinterface)        		initCylindricalAbsorptionCorrection()
        -(in srrietveld.midscript)        		instrument
        -(in srrietveld)
        importFromFit()
        -(in ConstWavelengthInstrument)        		initExponentialDecay()
        -(in srrietveld.midscript)        		Instrument
        -(in srrietveld.instrument)
        importFromFit()
        -(in Instrument)        		initInterpolatedBackground()
        -(in srrietveld.midscript)        		InstrumentGuide
        -(in srrietveld.refineguides)
        importFromFit()
        -(in TOFInstrument)        		initmem
        -(in MemoryMonitor)        		InstrumentXMLGenerator
        -(in srrietveld.xmlgenerator)
        importFromFit()
        -(in ThermalNeutronTOFInstrument)        		initPolynomialBackground()
        -(in srrietveld.midscript)        		InstrumentXMLParser
        -(in srrietveld.xmlinterface)
        importFromGSASexp()
        -(in srrietveld.gsasfileparser)        		initProfileGaussian()
        -(in srrietveld.midscript)        		integrate()
        -(in MarImage)
        importNPDFData()
        -(in NPDFData)        		initProfilePseudoVoigt()
        -(in srrietveld.midscript)        		InterpolatedBackgroundRefineSetup
        -(in srrietveld.refinesetup)
        importRietveldObject()
        -(in Instrument)        		initProfilePseudoVoigtIkedaCarpenter()
        -(in srrietveld.midscript)        		io
        -(in srrietveld)
        importXML()
        -(in srrietveld.xmlinterface)        		initProfileSplitPseudoVoigt()
        -(in srrietveld.midscript)        		isGoodFit()
        -(in srrietveld.datamanager)
        independentFit()
        -(in srrietveld.uisupport)        		initProfileTCHPseudoVoigt()
        -(in srrietveld.midscript)        		isOfTemplate()
        -(in srrietveld.uisupport)
        index
        -(in MemoryMonitor)        		initPseudoVoigtExp()
        -(in srrietveld.midscript)        		IsotropicADPRefineSetup
        -(in srrietveld.refinesetup)
        initBackground()
        -(in srrietveld.midscript)        		initPseudoVoigtExpDSpacing()
        -(in srrietveld.midscript)        		isPatternOneBank()
        -(in srrietveld.instrument)
        initCrystalPhase()
        -(in srrietveld.midscript)        		initThermalExponentialDecay()
        -(in srrietveld.midscript)        		isSinglePatternType()
        -(in srrietveld.refinemanager)
        -

        L

        		 - - - - - - - - - - - - - - - - - - - - - - - - - - -
        latParms
        -(in srrietveld.enduserscripts)        		LineStyleTable
        -(in PlotMatLib)        		locateRefinableParameter()
        -(in srrietveld.midscript)
        LatticeGuide
        -(in srrietveld.refineguides)        		listFileNamesInDirectory()
        -(in srrietveld.io)        		locateSharingSite()
        -(in srrietveld.utilrefineguide)
        LatticeRefineSetup
        -(in srrietveld.refinesetup)        		loadFit()
        -(in srrietveld.datamanager)        		logfilename
        -(in MemoryMonitor)
        leapBack()
        -(in MultiStepRefineManager)        		loadMultiStepRefinements()
        -(in srrietveld.refinemanager)        		 
        LineStyleList
        -(in PlotInfo2D)        		loadSeqRefineController()
        -(in srrietveld.utilsequentialrefine)        		 
        -

        M

        		 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        mapDataFileToStructure()
        -(in srrietveld.uisupport)        		MaxNumRefineGuidesStep
        -(in CalibrationTOFRietveldRefineStrategy)        		ModelRW
        -(in srrietveld.modelrw)
        MapKey()
        -(in srrietveld.gsasfileparser)        		MaxNumRefineGuidesStep
        -(in CalibrationXrayRietveldRefineStrategy)        		ModelXMLGenerator
        -(in srrietveld.xmlgenerator)
        mapNameRefineGuide()
        -(in UserDefinedRefineStrategy)        		MaxNumRefineGuidesStep
        -(in CloseRietveldRefineStrategy)        		monitor
        -(in MarImage)
        mapStructure()
        -(in srrietveld.midscript)        		MaxNumRefineGuidesStep
        -(in RefineStrategy)        		monitor
        -(in SpecMarExposure)
        mar_setup
        -(in ChiFile)        		MaxNumRefineGuidesStep
        -(in SctrachLebailRefineStrategy)        		monitor_scale
        -(in ChiFile)
        mar_setup
        -(in MarImage)        		MAXRP
        -(in srrietveld.datamanager)        		monitormem
        -(in srrietveld)
        mar_utilities
        -(in srrietveld)        		Measurement
        -(in srrietveld.measurements)        		MonoclinicRefineSetup
        -(in srrietveld.refinesetup)
        MarImage
        -(in srrietveld.mar_utilities)        		MeasurementGuide
        -(in srrietveld.refineguides)        		MultiStepRefineManager
        -(in srrietveld.refinemanager)
        MarkStyleList
        -(in PlotInfo2D)        		measurements
        -(in srrietveld)        		myEngine
        -(in srrietveld.instrument)
        MarkStyleTable
        -(in PlotMatLib)        		MeasurementXMLGenerator
        -(in srrietveld.xmlgenerator)        		myEngine
        -(in srrietveld.midscript)
        MarSetup
        -(in srrietveld.mar_utilities)        		MeasurementXMLParser
        -(in srrietveld.xmlinterface)        		myEngine
        -(in srrietveld)
        MaxNumRefineGuidesStep
        -(in CalibratedLebailRefineStrategy)        		MemoryMonitor
        -(in srrietveld.monitormem)        		myEngine
        -(in srrietveld.refinemanager)
        MaxNumRefineGuidesStep
        -(in CalibratedRietveldRefineStrategy)        		midscript
        -(in srrietveld)        		myEngine
        -(in srrietveld.sequentialrefinecontrol)
        MaxNumRefineGuidesStep
        -(in CalibratedXrayGSASRefineStrategy)        		mixedphaseanalyzer
        -(in srrietveld)        		 
        MaxNumRefineGuidesStep
        -(in CalibratedXrayRietveldRefineStrategy)        		modelrw
        -(in srrietveld)        		 
        -

        N

        		 - - - - - - - - - - - - - - - - -
        NeutronCWInstrument
        -(in srrietveld.instrument)        		NPDFData
        -(in srrietveld.dataprocessnpdf)        		NumBanks
        -(in NPDFData)
        NeutronCWInstrumentMeasurementXMLGenerator
        -(in srrietveld.xmlgenerator)        		NPDFDataParser
        -(in srrietveld.datafileconverter)        		 
        normalize()
        -(in NPDFData)        		NPDFMeasurementXMLGenerator
        -(in srrietveld.xmlgenerator)        		 
        -

        O

        		 - - - - - - - - - - - -
        OccRefineSetup
        -(in srrietveld.refinesetup)        		offRefinementProcess()
        -(in RefineStrategy)        		OrthorhombicRefineSetup
        -(in srrietveld.refinesetup)
        OccupancyGuide
        -(in srrietveld.refineguides)        		optionToString()
        -(in srrietveld.auxiliary)        		 
        -

        P

        		 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        parallelrefinecontrol
        -(in srrietveld)        		parseStructureSeqXML()
        -(in srrietveld.utilsequentialrefine)        		plot2D()
        -(in srrietveld.plot2d)
        ParallelRefinementControl
        -(in srrietveld.parallelrefinecontrol)        		parseXML()
        -(in RefineStrategyXMLParser)        		plotFit()
        -(in srrietveld.plot2d)
        parseBackground()
        -(in srrietveld.xmlinterface)        		parseXMLInstrument()
        -(in InstrumentXMLParser)        		PlotInfo2D
        -(in srrietveld.plot2d)
        parseDataFile()
        -(in DataFileParser)        		parseXMLMeasurement()
        -(in MeasurementXMLParser)        		PlotMatLib
        -(in srrietveld.plot2d)
        parseExcludedRegion()
        -(in srrietveld.xmlinterface)        		parseXMLModel()
        -(in StructureXMLParser)        		plotObservedPattern()
        -(in srrietveld.plot2d)
        parseGSASiparm()
        -(in srrietveld.gsasfileparser)        		PeakShapeGuide
        -(in srrietveld.refineguides)        		plotPattern()
        -(in srrietveld.plot2d)
        parseInstrumentNode()
        -(in InstrumentXMLParser)        		phasescript
        -(in srrietveld)        		plotPhase()
        -(in srrietveld.viewer3d)
        parseMeasurementNode()
        -(in MeasurementXMLParser)        		plot()
        -(in Plot2D)        		PolynomialBackgroundRefineSetup
        -(in srrietveld.refinesetup)
        parsePattern()
        -(in InstrumentXMLParser)        		plot2d
        -(in srrietveld)        		POWGENMeasurementXMLGenerator
        -(in srrietveld.xmlgenerator)
        parsePeakProfile()
        -(in InstrumentXMLParser)        		Plot2D
        -(in srrietveld.plot2d)        		PseudoVoigtExpDSpacingRefineSetup
        -(in srrietveld.refinesetup)
        parsePhaseNode()
        -(in StructureXMLParser)        		plot2D()
        -(in srrietveld.enduserscripts)        		 
        parseRange()
        -(in srrietveld.xmlinterface)        		plot2D()
        -(in PlotMatLib)        		 
        -

        Q

        		 - - - - - - - -
        Qbackground
        -(in srrietveld.qbackgrounds)        		qbackgrounds
        -(in srrietveld)        		 
           
        -

        R

        		 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        RAPDFDataParser
        -(in srrietveld.datafileconverter)        		refineByScript()
        -(in srrietveld.enduserscripts)        		reloadData()
        -(in srrietveld.midscript)
        RAPDFMeasurementXMLGenerator
        -(in srrietveld.xmlgenerator)        		RefineGuide
        -(in srrietveld.refineguides)        		removeGuideAtStep()
        -(in RefineStrategy)
        read()
        -(in ChiFile)        		refineguides
        -(in srrietveld)        		removeRegion()
        -(in srrietveld.plot2d)
        readOption()
        -(in srrietveld.auxiliary)        		refinehistory
        -(in srrietveld)        		replaceInterpolatedBackground()
        -(in srrietveld.utilbackground)
        readRAPDFXML()
        -(in srrietveld.uisupport)        		RefineHistory
        -(in srrietveld.refinehistory)        		replaceStructureModel()
        -(in srrietveld.midscript)
        readXMLProjectFile()
        -(in DataManager)        		refinemanager
        -(in srrietveld)        		report()
        -(in MemoryMonitor)
        record()
        -(in MemoryMonitor)        		refinesetup
        -(in srrietveld)        		reset()
        -(in MemoryMonitor)
        recordSolution()
        -(in MultiStepRefineManager)        		RefineSetup
        -(in srrietveld.refinesetup)        		reset()
        -(in RefineGuide)
        refholder
        -(in MemoryMonitor)        		refinestrategy
        -(in srrietveld)        		reset()
        -(in SeqRefineController)
        refine()
        -(in ParallelRefinementControl)        		RefineStrategy
        -(in srrietveld.refinestrategy)        		resetInstrument()
        -(in SeqRefineController)
        refine()
        -(in MultiStepRefineManager)        		RefineStrategyXMLGenerator
        -(in srrietveld.xmlgenerator)        		resetStructureModel()
        -(in SeqRefineController)
        refine()
        -(in SeqRefineController)        		RefineStrategyXMLParser
        -(in srrietveld.xmlinterface)        		resetVisitRecord()
        -(in RefineGuide)
        refine_all()
        -(in DataManager)        		register()
        -(in MemoryMonitor)        		RietveldEngine
        -(in srrietveld.refinebackend)
        refinebackend
        -(in srrietveld)        		RegularPseudoVoigtRefineSetup
        -(in srrietveld.refinesetup)        		 
        -

        S

        		 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        SampleGuide
        -(in srrietveld.refineguides)        		setColor()
        -(in PlotInfo2D)        		setZero()
        -(in ThermalNeutronTOFInstrument)
        save()
        -(in DataManager)        		setCWPattern()
        -(in srrietveld.midscript)        		simpleFit()
        -(in srrietveld.enduserscripts)
        save()
        -(in ParallelRefinementControl)        		setDataFileName()
        -(in Measurement)        		singleRaPDFFit()
        -(in srrietveld.uisupport)
        save()
        -(in MultiStepRefineManager)        		setExcludedRegion()
        -(in srrietveld.midscript)        		sortByAtomNumber()
        -(in srrietveld.utilrefineguide)
        save()
        -(in SeqRefineController)        		setExcludedRegion()
        -(in SeqRefineController)        		sortByAtomTag()
        -(in srrietveld.utilrefineguide)
        saveV2()
        -(in MultiStepRefineManager)        		setGuideStep()
        -(in RefineGuide)        		SpacegroupIDDict
        -(in srrietveld.spacegroupinfo)
        scale
        -(in srrietveld.enduserscripts)        		setInputFileName()
        -(in DataFileParser)        		spacegroupinfo
        -(in srrietveld)
        ScaleFactorRefineSetup
        -(in srrietveld.refinesetup)        		setInstrumentInformation()
        -(in NeutronCWInstrumentMeasurementXMLGenerator)        		SpacegroupNameDict
        -(in srrietveld.spacegroupinfo)
        ScaleGuide
        -(in srrietveld.refineguides)        		setInstrumentInformation()
        -(in XrayInstrumentMeasurementXMLGenerator)        		spec_file
        -(in MarImage)
        SctrachLebailRefineStrategy
        -(in srrietveld.refinestrategy)        		setLabel()
        -(in PlotInfo2D)        		spec_record
        -(in ChiFile)
        searchClosestValue()
        -(in srrietveld.datamanager)        		setLine()
        -(in Plot2D)        		spec_record
        -(in MarImage)
        searchdict()
        -(in srrietveld.auxiliary)        		setLineStyle()
        -(in PlotInfo2D)        		SpecMarExposure
        -(in srrietveld.mar_utilities)
        searchPeaks()
        -(in srrietveld.mixedphaseanalyzer)        		setMarkStyle()
        -(in PlotInfo2D)        		SplitPseudoVoigRefineSetup
        -(in srrietveld.refinesetup)
        selectBackgroundPoints()
        -(in XrayBackgroundProcess)        		setMeasureRange()
        -(in Measurement)        		srrietveld
        SeqFitRecordXMLGenerator
        -(in srrietveld.xmlgenerator)        		setNodeFromDict()
        -(in XMLGenerator)        		srrietveldconfiguration
        -(in srrietveld)
        SeqRefineController
        -(in srrietveld.sequentialrefinecontrol)        		setNodeFromDict()
        -(in XrayInstrumentXMLGenerator)        		startPyMol()
        -(in srrietveld.viewer3d)
        sequentialFit()
        -(in srrietveld.uisupport)        		setPattern()
        -(in srrietveld.midscript)        		startVMD()
        -(in srrietveld.viewer3d)
        sequentialrefinecontrol
        -(in srrietveld)        		setPeakProfileInfo()
        -(in Instrument)        		startWith()
        -(in srrietveld.stringutilfunction)
        set2ThetaSymmetricPeakProfile()
        -(in srrietveld.midscript)        		setPhase()
        -(in Instrument)        		StepFisrtRietveld
        -(in CalibratedLebailRefineStrategy)
        set3DViewer()
        -(in srrietveld.viewer3d)        		setRefineControl()
        -(in SeqRefineController)        		StepFisrtRietveld
        -(in CalibratedRietveldRefineStrategy)
        setBackend()
        -(in srrietveld)        		setRefineRange()
        -(in SeqRefineController)        		StepFisrtRietveld
        -(in CalibratedXrayGSASRefineStrategy)
        setBackground()
        -(in Measurement)        		setRefineRegion()
        -(in srrietveld.midscript)        		StepFisrtRietveld
        -(in CalibratedXrayRietveldRefineStrategy)
        setBackground()
        -(in SeqRefineController)        		setRefineStrategy()
        -(in ParallelRefinementControl)        		StepFisrtRietveld
        -(in CalibrationTOFRietveldRefineStrategy)
        setBackground()
        -(in NeutronCWInstrumentMeasurementXMLGenerator)        		setRefineStrategy()
        -(in SeqRefineController)        		StepFisrtRietveld
        -(in CalibrationXrayRietveldRefineStrategy)
        setBackground()
        -(in XrayInstrumentMeasurementXMLGenerator)        		setReplaceBackground()
        -(in RefineStrategy)        		StepFisrtRietveld
        -(in CloseRietveldRefineStrategy)
        setBank()
        -(in NPDFMeasurementXMLGenerator)        		setRietveldEngine()
        -(in RietveldEngine)        		StepFisrtRietveld
        -(in RefineStrategy)
        setBank()
        -(in POWGENMeasurementXMLGenerator)        		setToRefine()
        -(in RefineSetup)        		StepFisrtRietveld
        -(in SctrachLebailRefineStrategy)
        setBank()
        -(in TOFMeasurementXMLGenerator)        		setX()
        -(in PlotInfo2D)        		stringutilfunction
        -(in srrietveld)
        setBankInfo()
        -(in TOFInstrument)        		setY()
        -(in PlotInfo2D)        		StructureXMLParser
        -(in srrietveld.xmlinterface)
        setBankInfo()
        -(in ThermalNeutronTOFInstrument)        		setZero()
        -(in ConstWavelengthInstrument)        		syncData()
        -(in DataManager)
        setBankNumber()
        -(in Measurement)        		setZero()
        -(in Instrument)        		 
        setBankToRefine()
        -(in SeqRefineController)        		setZero()
        -(in TOFInstrument)        		 
        -

        T

        		 - - - - - - - - - - - - - - - - - - - - - -
        TCHPseudoVoigtRefineSetup
        -(in srrietveld.refinesetup)        		ThermalNeutronTOFXMLGenerator
        -(in srrietveld.xmlgenerator)        		TOFPseudoVoigtRefinement
        -(in srrietveld.refinesetup)
        testmain()
        -(in srrietveld.auxiliary)        		TOFExpDecayRefineSetup
        -(in srrietveld.refinesetup)        		TOFXMLGenerator
        -(in srrietveld.xmlgenerator)
        TetragonalRefineSetup
        -(in srrietveld.refinesetup)        		TOFInstrument
        -(in srrietveld.instrument)        		TrigonalRefineSetup
        -(in srrietveld.refinesetup)
        ThermalNeutronTOFInstrument
        -(in srrietveld.instrument)        		TOFMeasurementXMLGenerator
        -(in srrietveld.xmlgenerator)        		turnOff()
        -(in RefineGuide)
        -

        U

        		 - - - - - - - - - - - - - - - - - - - - - - - - - - -
        uisupport
        -(in srrietveld)        		UserDefinedRefineStrategy
        -(in srrietveld.refinestrategy)        		utilrefineguide
        -(in srrietveld)
        undef()
        -(in MarSetup)        		utilbackground
        -(in srrietveld)        		utilsequentialrefine
        -(in srrietveld)
        undefAll()
        -(in MarSetup)        		utilinstrument
        -(in srrietveld)        		utilunits
        -(in srrietveld)
        update()
        -(in SeqRefineController)        		utilplot
        -(in srrietveld)        		 
        usage()
        -(in MemoryMonitor)        		utilrapdf
        -(in srrietveld)        		 
        -

        V

        		 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        VarSetupDict
        -(in AbsorptionCorrectionRefineSetup)        		VarSetupDict
        -(in PseudoVoigtExpDSpacingRefineSetup)        		VarSetupDict
        -(in WavelengthRefineSetup)
        VarSetupDict
        -(in AnisotropicADPRefineSetup)        		VarSetupDict
        -(in RegularPseudoVoigtRefineSetup)        		VarSetupDict
        -(in ZeroShiftRefineSetup)
        VarSetupDict
        -(in AtomFractionalCoordinateRefineSetup)        		VarSetupDict
        -(in ScaleFactorRefineSetup)        		VarSetupDict
        -(in ZeroShiftThermoRefineSetup)
        VarSetupDict
        -(in ConstantWaveSymmetricPeakShapeRefineSetup)        		VarSetupDict
        -(in SplitPseudoVoigRefineSetup)        		viewer3d
        -(in srrietveld)
        VarSetupDict
        -(in CubicRefineSetup)        		VarSetupDict
        -(in TCHPseudoVoigtRefineSetup)        		viewer3D()
        -(in srrietveld.viewer3d)
        VarSetupDict
        -(in HexagonalRefineSetup)        		VarSetupDict
        -(in TOFExpDecayRefineSetup)        		viserrors
        -(in srrietveld)
        VarSetupDict
        -(in IsotropicADPRefineSetup)        		VarSetupDict
        -(in TOFPseudoVoigtRefinement)        		VisualizationError
        -(in srrietveld.viserrors)
        VarSetupDict
        -(in MonoclinicRefineSetup)        		VarSetupDict
        -(in TetragonalRefineSetup)        		 
        VarSetupDict
        -(in OrthorhombicRefineSetup)        		VarSetupDict
        -(in TrigonalRefineSetup)        		 
        -

        W

        		 - - - - - - - - - - - - - - - - - - - - - -
        WavelengthGuide
        -(in srrietveld.refineguides)        		writeGSAS()
        -(in ChiFile)        		writeToColumnFile()
        -(in srrietveld.io)
        WavelengthRefineSetup
        -(in srrietveld.refinesetup)        		writeGSASFile()
        -(in MarImage)        		writeToFile()
        -(in DataFileParser)
        write()
        -(in ChiFile)        		writeGSASStr()
        -(in ChiFile)        		writeToFile()
        -(in XYSigmaFileParser)
        writeChiFile()
        -(in MarImage)        		writeStr()
        -(in ChiFile)        		 
        -

        X

        		 - - - - - - - - - - - - - - - - - - - - - - - - - - -
        xmlconvertor
        -(in srrietveld)        		xmlinterface
        -(in srrietveld)        		XrayInstrumentMeasurementXMLGenerator
        -(in srrietveld.xmlgenerator)
        xmlFilter()
        -(in srrietveld.xmlinterface)        		xmlToDict()
        -(in srrietveld.xmlinterface)        		XrayInstrumentXMLGenerator
        -(in srrietveld.xmlgenerator)
        xmlgenerator
        -(in srrietveld)        		xmlToString()
        -(in srrietveld.xmlinterface)        		XYSigmaFileParser
        -(in srrietveld.datafileconverter)
        XMLGenerator
        -(in srrietveld.xmlgenerator)        		XrayBackgroundProcess
        -(in srrietveld.utilbackground)        		 
        XMLInstrumentMapDict
        -(in XrayInstrumentXMLGenerator)        		XrayInstrument
        -(in srrietveld.instrument)        		 
        -

        Z

        		 - - - - - - - - - - - -
        ZeroGuide
        -(in srrietveld.refineguides)        		ZeroShiftRefineSetup
        -(in srrietveld.refinesetup)        		 
        zeroShift
        -(in srrietveld.enduserscripts)        		ZeroShiftThermoRefineSetup
        -(in srrietveld.refinesetup)        		 
        -

        _

        		 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        __eq__()
        -(in MarSetup)        		__init__()
        -(in RietveldEngine)        		_DEBUG01
        -(in srrietveld.refinemanager)
        __id__
        -(in srrietveld)        		__init__()
        -(in RefineGuide)        		_DEBUG_ARG
        -(in srrietveld.refinesetup)
        __id__
        -(in srrietveld.atominfo)        		__init__()
        -(in RefineHistory)        		_DEBUGMODE
        -(in srrietveld.auxiliary)
        __id__
        -(in srrietveld.autobackgroundselect)        		__init__()
        -(in MultiStepRefineManager)        		_DEBUGOUTPUT
        -(in srrietveld.utilrefineguide)
        __id__
        -(in srrietveld.auxiliary)        		__init__()
        -(in InterpolatedBackgroundRefineSetup)        		_get_file()
        -(in SpecMarExposure)
        __id__
        -(in srrietveld.datafileconverter)        		__init__()
        -(in LatticeRefineSetup)        		_get_mar_setup()
        -(in ChiFile)
        __id__
        -(in srrietveld.datamanager)        		__init__()
        -(in OccRefineSetup)        		_get_mar_setup()
        -(in MarImage)
        __id__
        -(in srrietveld.dataprocessnpdf)        		__init__()
        -(in PolynomialBackgroundRefineSetup)        		_get_monitor()
        -(in MarImage)
        __id__
        -(in srrietveld.enduserscripts)        		__init__()
        -(in RefineSetup)        		_get_monitor()
        -(in SpecMarExposure)
        __id__
        -(in srrietveld.gsasfileparser)        		__init__()
        -(in CalibratedLebailRefineStrategy)        		_get_spec_file()
        -(in MarImage)
        __id__
        -(in srrietveld.instrument)        		__init__()
        -(in CalibratedRietveldRefineStrategy)        		_get_spec_record()
        -(in ChiFile)
        __id__
        -(in srrietveld.io)        		__init__()
        -(in CalibratedTOFRietveldRefineStrategy)        		_get_spec_record()
        -(in MarImage)
        __id__
        -(in srrietveld.mar_utilities)        		__init__()
        -(in CalibratedXrayFullProfRefineStrategy)        		_get_spec_stuff()
        -(in MarImage)
        __id__
        -(in srrietveld.measurements)        		__init__()
        -(in CalibratedXrayGSASRefineStrategy)        		_isFloat()
        -(in srrietveld.plot2d)
        __id__
        -(in srrietveld.midscript)        		__init__()
        -(in CalibratedXrayRietveldRefineStrategy)        		_isFloatList()
        -(in srrietveld.plot2d)
        __id__
        -(in srrietveld.mixedphaseanalyzer)        		__init__()
        -(in CalibrationTOFFullProfRefineStrategy)        		_isInt()
        -(in srrietveld.plot2d)
        __id__
        -(in srrietveld.modelrw)        		__init__()
        -(in CalibrationTOFGSASRefineStrategy)        		_isIntList()
        -(in srrietveld.plot2d)
        __id__
        -(in srrietveld.monitormem)        		__init__()
        -(in CalibrationTOFRietveldRefineStrategy)        		_MaxOrder
        -(in PolynomialBackgroundRefineSetup)
        __id__
        -(in srrietveld.parallelrefinecontrol)        		__init__()
        -(in CalibrationXrayFullProfRefineStrategy)        		_MEMCHECK
        -(in srrietveld.refinemanager)
        __id__
        -(in srrietveld.phasescript)        		__init__()
        -(in CalibrationXrayGSASRefineStrategy)        		_MEMCHECK
        -(in srrietveld.sequentialrefinecontrol)
        __id__
        -(in srrietveld.plot2d)        		__init__()
        -(in CalibrationXrayRietveldRefineStrategy)        		_MEMCHECK
        -(in srrietveld.uisupport)
        __id__
        -(in srrietveld.qbackgrounds)        		__init__()
        -(in CloseRietveldRefineStrategy)        		_NumPar
        -(in CubicRefineSetup)
        __id__
        -(in srrietveld.refinebackend)        		__init__()
        -(in RefineStrategy)        		_NumPar
        -(in HexagonalRefineSetup)
        __id__
        -(in srrietveld.refineguides)        		__init__()
        -(in SctrachLebailRefineStrategy)        		_NumPar
        -(in MonoclinicRefineSetup)
        __id__
        -(in srrietveld.refinehistory)        		__init__()
        -(in UserDefinedRefineStrategy)        		_NumPar
        -(in OrthorhombicRefineSetup)
        __id__
        -(in srrietveld.refinemanager)        		__init__()
        -(in SeqRefineController)        		_NumPar
        -(in TetragonalRefineSetup)
        __id__
        -(in srrietveld.refinesetup)        		__init__()
        -(in BackgroundProcess)        		_NumPar
        -(in TrigonalRefineSetup)
        __id__
        -(in srrietveld.refinestrategy)        		__init__()
        -(in XrayBackgroundProcess)        		_NumStages
        -(in InterpolatedBackgroundRefineSetup)
        __id__
        -(in srrietveld.sequentialrefinecontrol)        		__init__()
        -(in VisualizationError)        		_NumStages
        -(in PolynomialBackgroundRefineSetup)
        __id__
        -(in srrietveld.spacegroupinfo)        		__init__()
        -(in cifToxml)        		_NumStep
        -(in OrthorhombicRefineSetup)
        __id__
        -(in srrietveld.srrietveldconfiguration)        		__init__()
        -(in ExcludedRegionXMLGenerator)        		_NumSteps
        -(in CubicRefineSetup)
        __id__
        -(in srrietveld.stringutilfunction)        		__init__()
        -(in GEMMeasurementXMLGenerator)        		_NumSteps
        -(in HexagonalRefineSetup)
        __id__
        -(in srrietveld.uisupport)        		__init__()
        -(in InstrumentXMLGenerator)        		_NumSteps
        -(in TetragonalRefineSetup)
        __id__
        -(in srrietveld.utilbackground)        		__init__()
        -(in MeasurementXMLGenerator)        		_offsetMultiplier
        -(in srrietveld.plot2d)
        __id__
        -(in srrietveld.utilinstrument)        		__init__()
        -(in ModelXMLGenerator)        		_OUTPUT
        -(in srrietveld.sequentialrefinecontrol)
        __id__
        -(in srrietveld.utilplot)        		__init__()
        -(in NPDFMeasurementXMLGenerator)        		_parse()
        -(in DataFileParser)
        __id__
        -(in srrietveld.utilrapdf)        		__init__()
        -(in NeutronCWInstrumentMeasurementXMLGenerator)        		_parse()
        -(in FullProfFreeFormatParser)
        __id__
        -(in srrietveld.utilrefineguide)        		__init__()
        -(in POWGENMeasurementXMLGenerator)        		_parse()
        -(in GEMDataParser)
        __id__
        -(in srrietveld.utilsequentialrefine)        		__init__()
        -(in RefineStrategyXMLGenerator)        		_parse()
        -(in XYSigmaFileParser)
        __id__
        -(in srrietveld.utilunits)        		__init__()
        -(in SeqFitRecordXMLGenerator)        		_parseDataFile()
        -(in GEMMeasurementXMLGenerator)
        __id__
        -(in srrietveld.viewer3d)        		__init__()
        -(in TOFMeasurementXMLGenerator)        		_parseDataFile()
        -(in NPDFMeasurementXMLGenerator)
        __id__
        -(in srrietveld.viserrors)        		__init__()
        -(in TOFXMLGenerator)        		_parseDataFile()
        -(in NeutronCWInstrumentMeasurementXMLGenerator)
        __id__
        -(in srrietveld.xmlgenerator)        		__init__()
        -(in ThermalNeutronTOFXMLGenerator)        		_parseDataFile()
        -(in RAPDFMeasurementXMLGenerator)
        __id__
        -(in srrietveld.xmlinterface)        		__init__()
        -(in XMLGenerator)        		_parseDataFile()
        -(in XrayInstrumentMeasurementXMLGenerator)
        __init__()
        -(in DataFileParser)        		__init__()
        -(in XrayInstrumentMeasurementXMLGenerator)        		_plotPattern()
        -(in srrietveld.plot2d)
        __init__()
        -(in FullProfFreeFormatParser)        		__init__()
        -(in XrayInstrumentXMLGenerator)        		_readMarFile()
        -(in MarImage)
        __init__()
        -(in GEMDataParser)        		__init__()
        -(in InstrumentXMLParser)        		_rebinArray()
        -(in srrietveld.plot2d)
        __init__()
        -(in NPDFDataParser)        		__init__()
        -(in MeasurementXMLParser)        		_SCREENOUTPUT
        -(in srrietveld.parallelrefinecontrol)
        __init__()
        -(in RAPDFDataParser)        		__init__()
        -(in RefineStrategyXMLParser)        		_SCREENOUTPUT
        -(in srrietveld.refinemanager)
        __init__()
        -(in XYSigmaFileParser)        		__init__()
        -(in StructureXMLParser)        		_SCREENOUTPUT
        -(in srrietveld.sequentialrefinecontrol)
        __init__()
        -(in DataManager)        		__Lidx_monitor
        -(in SpecMarExposure)        		_set_file()
        -(in SpecMarExposure)
        __init__()
        -(in NPDFData)        		__main__()
        -(in srrietveld.srrietveldconfiguration)        		_set_mar_setup()
        -(in ChiFile)
        __init__()
        -(in ConstWavelengthInstrument)        		__processArgs()
        -(in MarSetup)        		_set_mar_setup()
        -(in MarImage)
        __init__()
        -(in Instrument)        		__readFit2dChiStr()
        -(in ChiFile)        		_set_monitor()
        -(in SpecMarExposure)
        __init__()
        -(in NeutronCWInstrument)        		__readMarUtilitiesStr()
        -(in ChiFile)        		_set_spec_record()
        -(in ChiFile)
        __init__()
        -(in TOFInstrument)        		__str__()
        -(in ConstWavelengthInstrument)        		_setUpGuideDict()
        -(in CalibratedLebailRefineStrategy)
        __init__()
        -(in ThermalNeutronTOFInstrument)        		__str__()
        -(in Instrument)        		_setUpGuideDict()
        -(in CalibratedRietveldRefineStrategy)
        __init__()
        -(in XrayInstrument)        		__str__()
        -(in NeutronCWInstrument)        		_setUpGuideDict()
        -(in CalibratedXrayGSASRefineStrategy)
        __init__()
        -(in ChiFile)        		__str__()
        -(in TOFInstrument)        		_setUpGuideDict()
        -(in CalibratedXrayRietveldRefineStrategy)
        __init__()
        -(in MarImage)        		__str__()
        -(in XrayInstrument)        		_setUpGuideDict()
        -(in CalibrationTOFRietveldRefineStrategy)
        __init__()
        -(in MarSetup)        		__str__()
        -(in MarSetup)        		_setUpGuideDict()
        -(in CalibrationXrayRietveldRefineStrategy)
        __init__()
        -(in SpecMarExposure)        		__str__()
        -(in SpecMarExposure)        		_setUpGuideDict()
        -(in CloseRietveldRefineStrategy)
        __init__()
        -(in Measurement)        		__str__()
        -(in RefineGuide)        		_setUpGuideDict()
        -(in RefineStrategy)
        __init__()
        -(in CifRW)        		__str__()
        -(in RefineHistory)        		_setUpGuideDict()
        -(in SctrachLebailRefineStrategy)
        __init__()
        -(in ModelRW)        		__str__()
        -(in RefineStrategy)        		_setUpGuideDict()
        -(in UserDefinedRefineStrategy)
        __init__()
        -(in MemoryMonitor)        		__str__()
        -(in SeqRefineController)        		_spec_mar_exposures
        -(in srrietveld.mar_utilities)
        __init__()
        -(in ParallelRefinementControl)        		_DBOUTPUT
        -(in srrietveld.refinemanager)        		_updateInor()
        -(in ChiFile)
        __init__()
        -(in Plot2D)        		_DEBUG
        -(in srrietveld.refineguides)        		_updateQ()
        -(in ChiFile)
        __init__()
        -(in PlotInfo2D)        		_DEBUG
        -(in srrietveld.refinemanager)        		_viewer
        -(in srrietveld.viewer3d)
        __init__()
        -(in PlotMatLib)        		_DEBUG
        -(in srrietveld.refinesetup)        		_viewers
        -(in srrietveld.viewer3d)
        -
        -

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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld-module.html b/static_root/doc/srrietveld/developers/srrietveld-module.html deleted file mode 100644 index 4d9d8c31..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld-module.html +++ /dev/null @@ -1,381 +0,0 @@ - - - - - srrietveld - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
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        - - Package srrietveld - - - - - - -
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        -
        - -

        Package srrietveld

        source code

        -

        The package contains classes and methods for Rietveld fitting.

        - If the you have any suggestions about this package, please email us at - diffpy-dev@googlegroups.com

        - - - - - - - - -
        - - - - - -
        Submodules[hide private]
        -
        -
        - -
        - - - - - - - - - -
        - - - - - -
        Functions[hide private]
        -
        -   - - - - - - -
        setBackend(namespace, - package="SrRietUI.diffpy.rietveldapi")
        - Set the engine.        		 - source code - -
        - -
        - - - - - - - - - - - - -
        - - - - - -
        Variables[hide private]
        -
        -   - - __id__ = '$Id: __init__.py 2792 2009-03-02 15:56:43Z wdzhou $' -
        -   - - myEngine = <srrietveld.refinebackend.RietveldEngine instance a... -
        - - - - - - -
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        setBackend(namespace, - package="SrRietUI.diffpy.rietveldapi") -

        -         		source code  -
        - - 
        -Set the engine.
-
-namespace   --  namespace dictionary of the controller. usually globals()
-package     --  The name of the package containing the diffpy.rietveldapi
-                implementation (default "SrRietUI.diffpy.rietveldapi").
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        Source Code for Package srrietveld

        -
        - 1  #!/usr/bin/env python 
- 2   
- 3  ############################################################################## 
- 4  # 
- 5  # diffpy.__init__   by DANSE Diffraction group 
- 6  #                   Simon J. L. Billinge 
- 7  #                   (c) 2008 Trustees of the Columbia University 
- 8  #                   in the City of New York.  All rights reserved. 
- 9  # 
-10  # File coded by:    Wenduo Zhou 
-11  # 
-12  # See AUTHORS.txt for a list of people who contributed. 
-13  # See LICENSE.txt for license information. 
-14  # 
-15  ############################################################################## 
-16   
-17  """The package contains classes and methods for Rietveld fitting. 
-18   
-19  If the you have any suggestions about this package, please email us at 
-20  diffpy-dev@googlegroups.com 
-21  """ 
-22   
-23  __id__ = "$Id: __init__.py 2792 2009-03-02 15:56:43Z wdzhou $" 
-24   
-25  import refinebackend as SRBE 
-26   
-27  myEngine = SRBE.RietveldEngine() 
-28   
-29  if 0: 
-30      from plot2d import plotPattern, plotFit 
-31      from viewer3d import plotPhase, set3DViewer 
-32      from diffpy.pyfullprof import * 
-33       
-
        34 -    def setBackend(namespace, package = "SrRietUI.diffpy.rietveldapi"): 
-
        35          """Set the engine. 
-36       
-37          namespace   --  namespace dictionary of the controller. usually globals() 
-38          package     --  The name of the package containing the diffpy.rietveldapi 
-39                          implementation (default "SrRietUI.diffpy.rietveldapi"). 
-40          """ 
-41          API = __import__(package, globals(), locals(), ["*"]) 
-42          # Check to see if SrRietveld is loaded. If not, then assume a globbed 
-43          # import (from SrRietveld import *). 
-44          if "diffpy.srrietveld" in namespace: 
-45              mdict = namespace["diffpy.srrietveld"].__dict__ 
-46          else: 
-47              mdict = namespace 
-48          mdict.update(API.__dict__) 
-49          return 
-
        50   
-51  #setBackend(globals()) 
-52   
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        Module atominfo

        source code

        - - - - - - - - - -
        - - - - - -
        Classes[hide private]
        -
        -   - - AtomDicts
        - Class to hold some static dictionaries, including (1) - AtomNumberDict (2) AtomNameDict -
        - - - - - - - - - -
        - - - - - -
        Functions[hide private]
        -
        -   - - - - - - -
        getAtomNumberByName(atomname)
        - get an atom's atom number according to its name - -Argument: - atomname : string, name of an atom - -Return : integer, this aotm's number - -Exception: -1.        		 - source code - -
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        - - - - - - - - - -
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        -   - - __id__ = '$Id: atominfo.py 2792 2009-03-02 15:56:43Z wdzhou $' -
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        getAtomNumberByName(atomname) -

        -         		source code  -
        - - 
        -get an atom's atom number according to its name
-
-Argument:
-  atomname  :   string, name of an atom
-
-Return      :   integer, this aotm's number
-
-Exception:  
-1. atomname is not a valid atom's name
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        Source Code for Module srrietveld.atominfo

        -
        -  1  ################################################################################ 
-  2  # 
-  3  #   This is a module containing a lot of data base and methods related to atom 
-  4  # 
-  5  #   Created On: 2008.06.30 
-  6  #           By: W. Zhou 
-  7  # 
-  8  ################################################################################ 
-  9  __id__ = "$Id: atominfo.py 2792 2009-03-02 15:56:43Z wdzhou $" 
- 10   
-
         11 -class AtomDicts: 
-
         12      """ Class to hold some static dictionaries, including 
- 13      (1) AtomNumberDict 
- 14      (2) AtomNameDict 
- 15      """ 
- 16      AtomNumberDict = { 
- 17          1  : ("H"  , 1.00794   ), 
- 18          2  : ("He" , 4.0026    ), 
- 19          3  : ("Li" , 6.941     ), 
- 20          4  : ("Be" , 9.01218   ), 
- 21          5  : ("B"  , 10.811    ), 
- 22          6  : ("C"  , 12.011    ), 
- 23          7  : ("N"  , 14.0067   ), 
- 24          8  : ("O"  , 15.9994   ), 
- 25          9  : ("F"  , 18.9984   ), 
- 26          10 : ("Ne" , 20.1797   ), 
- 27          11 : ("Na" , 22.98977  ), 
- 28          12 : ("Mg" , 24.305    ), 
- 29          13 : ("Al" , 26.98154  ), 
- 30          14 : ("Si" , 28.0855   ), 
- 31          15 : ("P"  , 30.97376  ), 
- 32          16 : ("S"  , 32.066    ), 
- 33          17 : ("Cl" , 35.4527   ), 
- 34          18 : ("Ar" , 39.948    ), 
- 35          19 : ("K"  , 39.0983   ), 
- 36          20 : ("Ca" , 40.078    ), 
- 37          21 : ("Sc" , 44.9559   ), 
- 38          22 : ("Ti" , 47.88     ), 
- 39          23 : ("V"  , 50.9415   ), 
- 40          24 : ("Cr" , 51.996    ), 
- 41          25 : ("Mn" , 54.938    ), 
- 42          26 : ("Fe" , 55.847    ), 
- 43          27 : ("Co" , 58.9332   ), 
- 44          28 : ("Ni" , 58.6934   ), 
- 45          29 : ("Cu" , 63.546    ), 
- 46          30 : ("Zn" , 65.39     ), 
- 47          31 : ("Ga" , 69.723    ), 
- 48          32 : ("Ge" , 72.61     ), 
- 49          33 : ("As" , 74.9216   ), 
- 50          34 : ("Se" , 78.96     ), 
- 51          35 : ("Br" , 79.904    ), 
- 52          36 : ("Kr" , 83.8      ), 
- 53          37 : ("Rb" , 85.4678   ), 
- 54          38 : ("Sr" , 87.62     ), 
- 55          39 : ("Y"  , 88.9059   ), 
- 56          40 : ("Zr" , 91.224    ), 
- 57          41 : ("Nb" , 92.9064   ), 
- 58          42 : ("Mo" , 95.94     ), 
- 59          43 : ("Tc" , None      ), 
- 60          44 : ("Ru" , 101.07    ), 
- 61          45 : ("Rh" , 102.9055  ), 
- 62          46 : ("Pd" , 106.42    ), 
- 63          47 : ("Ag" , 107.868   ), 
- 64          48 : ("Cd" , 112.41    ), 
- 65          49 : ("In" , 114.82    ), 
- 66          50 : ("Sn" , 118.71    ), 
- 67          51 : ("Sb" , 121.757   ), 
- 68          52 : ("Te" , 127.6     ), 
- 69          53 : ("I"  , 126.9045  ), 
- 70          54 : ("Xe" , 131.29    ), 
- 71          55 : ("Cs" , 132.9054  ), 
- 72          56 : ("Ba" , 137.33    ), 
- 73          57 : ("La" , 138.9055  ), 
- 74          58 : ("Ce" , 140.12    ), 
- 75          59 : ("Pr" , 140.9077  ), 
- 76          60 : ("Nd" , 144.24    ), 
- 77          61 : ("Pm" , None      ), 
- 78          62 : ("Sm" , 150.36    ), 
- 79          63 : ("Eu" , 151.965   ), 
- 80          64 : ("Gd" , 157.25    ), 
- 81          65 : ("Tb" , 158.9253  ), 
- 82          66 : ("Dy" , 162.5     ), 
- 83          67 : ("Ho" , 164.9303  ), 
- 84          68 : ("Er" , 167.26    ), 
- 85          69 : ("Tm" , 168.9342  ), 
- 86          70 : ("Yb" , 173.04    ), 
- 87          71 : ("Lu" , 174.967   ), 
- 88          72 : ("Hf" , 178.49    ), 
- 89          73 : ("Ta" , 180.9479  ), 
- 90          74 : ("W"  , 183.85    ), 
- 91          75 : ("Re" , 186.207   ), 
- 92          76 : ("Os" , 190.2     ), 
- 93          77 : ("Ir" , 192.22    ), 
- 94          78 : ("Pt" , 195.08    ), 
- 95          79 : ("Au" , 196.9665  ), 
- 96          80 : ("Hg" , 200.59    ), 
- 97          81 : ("Tl" , 204.383   ), 
- 98          82 : ("Pb" , 207.2     ), 
- 99          83 : ("Bi" , 208.9804  ), 
-100          84 : ("Po" , None      ), 
-101          85 : ("At" , None      ), 
-102          86 : ("Rn" , None      ), 
-103          87 : ("Fr" , None      ), 
-104          88 : ("Ra" , 226.0254  ), 
-105          89 : ("Ac" , None      ), 
-106          90 : ("Th" , 232.0381  ), 
-107          91 : ("Pa" , 231.0359  ), 
-108          92 : ("U"  , 238.029   ), 
-109          93 : ("Np" , 237.0482  ), 
-110          94 : ("Pu" , None      ), 
-111          95 : ("Am" , None      ), 
-112          96 : ("Cm" , None      ), 
-113          97 : ("Bk" , None      ), 
-114          98 : ("Cf" , None      ), 
-115          99 : ("Es" , None      ), 
-116          100: ("Fm" , None      ), 
-117          101: ("Md" , None      ), 
-118          102: ("No" , None      ), 
-119          103: ("Lw" , None      ), 
-120      } 
-121   
-122      AtomNameDict = { 
-123          "H"  : 1  ,  
-124          "He" : 2  ,  
-125          "Li" : 3  ,  
-126          "Be" : 4  ,  
-127          "B"  : 5  ,  
-128          "C"  : 6  ,  
-129          "N"  : 7  ,  
-130          "O"  : 8  ,  
-131          "F"  : 9  ,  
-132          "Ne" : 10 ,  
-133          "Na" : 11 ,  
-134          "Mg" : 12 ,  
-135          "Al" : 13 ,  
-136          "Si" : 14 ,  
-137          "P"  : 15 ,  
-138          "S"  : 16 ,  
-139          "Cl" : 17 ,  
-140          "Ar" : 18 ,  
-141          "K"  : 19 ,  
-142          "Ca" : 20 ,  
-143          "Sc" : 21 ,  
-144          "Ti" : 22 ,  
-145          "V"  : 23 ,  
-146          "Cr" : 24 ,  
-147          "Mn" : 25 ,  
-148          "Fe" : 26 ,  
-149          "Co" : 27 ,  
-150          "Ni" : 28 ,  
-151          "Cu" : 29 ,  
-152          "Zn" : 30 ,  
-153          "Ga" : 31 ,  
-154          "Ge" : 32 ,  
-155          "As" : 33 ,  
-156          "Se" : 34 ,  
-157          "Br" : 35 ,  
-158          "Kr" : 36 ,  
-159          "Rb" : 37 ,  
-160          "Sr" : 38 ,  
-161          "Y"  : 39 ,  
-162          "Zr" : 40 ,  
-163          "Nb" : 41 ,  
-164          "Mo" : 42 ,  
-165          "Tc" : 43 ,  
-166          "Ru" : 44 ,  
-167          "Rh" : 45 ,  
-168          "Pd" : 46 ,  
-169          "Ag" : 47 ,  
-170          "Cd" : 48 ,  
-171          "In" : 49 ,  
-172          "Sn" : 50 ,  
-173          "Sb" : 51 ,  
-174          "Te" : 52 ,  
-175          "I"  : 53 ,  
-176          "Xe" : 54 ,  
-177          "Cs" : 55 ,  
-178          "Ba" : 56 ,  
-179          "La" : 57 ,  
-180          "Ce" : 58 ,  
-181          "Pr" : 59 ,  
-182          "Nd" : 60 ,  
-183          "Pm" : 61 ,  
-184          "Sm" : 62 ,  
-185          "Eu" : 63 ,  
-186          "Gd" : 64 ,  
-187          "Tb" : 65 ,  
-188          "Dy" : 66 ,  
-189          "Ho" : 67 ,  
-190          "Er" : 68 ,  
-191          "Tm" : 69 ,  
-192          "Yb" : 70 ,  
-193          "Lu" : 71 ,  
-194          "Hf" : 72 ,  
-195          "Ta" : 73 ,  
-196          "W"  : 74 ,  
-197          "Re" : 75 ,  
-198          "Os" : 76 ,  
-199          "Ir" : 77 ,  
-200          "Pt" : 78 ,  
-201          "Au" : 79 ,  
-202          "Hg" : 80 ,  
-203          "Tl" : 81 ,  
-204          "Pb" : 82 ,  
-205          "Bi" : 83 ,  
-206          "Po" : 84 ,  
-207          "At" : 85 ,  
-208          "Rn" : 86 ,  
-209          "Fr" : 87 ,  
-210          "Ra" : 88 ,  
-211          "Ac" : 89 ,  
-212          "Th" : 90 ,  
-213          "Pa" : 91 ,  
-214          "U"  : 92 ,  
-215          "Np" : 93 ,  
-216          "Pu" : 94 ,  
-217          "Am" : 95 ,  
-218          "Cm" : 96 ,  
-219          "Bk" : 97 ,  
-220          "Cf" : 98 ,  
-221          "Es" : 99 ,  
-222          "Fm" : 100,  
-223          "Md" : 101,  
-224          "No" : 102,  
-225          "Lw" : 103,  
-226      } 
-
        227   
-228  # END CLASS --AtomDicts: 
-229   
-230  # External Functions 
-
        231 -def getAtomNumberByName(atomname): 
-
        232      """ get an atom's atom number according to its name 
-233       
-234      Argument: 
-235        atomname  :   string, name of an atom 
-236       
-237      Return      :   integer, this aotm's number 
-238   
-239      Exception:   
-240      1. atomname is not a valid atom's name 
-241      """ 
-242      if not isinstance(atomname, str): 
-243          errmsg = "Input atomname is not string, but %-20s"% (type(atomname)) 
-244          raise TypeError(errmsg) 
-245   
-246      # 1. clean name 
-247      cleanname = atomname.strip() 
-248      if len(cleanname) == 1: 
-249          if not cleanname.isupper(): 
-250              cleanname = cleanname.upper() 
-251      elif len(cleanname) == 2: 
-252          s1 = cleanname[0] 
-253          s2 = cleanname[1] 
-254          recombine = False 
-255          if not s1.isupper(): 
-256              s1 = s1.upper() 
-257              recombine = True 
-258          if not s2.islower(): 
-259              s2 = s2.lower() 
-260              recombine = True 
-261          if recombine is True: 
-262              cleanname = s1+s2 
-263   
-264      # 2. find atom 
-265      try: 
-266          atomnumber = AtomDicts.AtomNameDict[cleanname] 
-267          return atomnumber 
-268      except KeyError, err: 
-269          errmsg = "Atom Name %-5s Is Not Recoganized"% (cleanname) 
-270          raise KeyError(errmsg) 
-271   
-272      return 
-
        273   
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        Class AtomDicts

        source code

        -Class to hold some static dictionaries, including (1) AtomNumberDict - (2) AtomNameDict

        - - - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - AtomNumberDict = {1: ('H', 1.00794), 2: ('He', 4.0026), 3: ('L... -
        -   - - AtomNameDict = {'Ac': 89, 'Ag': 47, 'Al': 13, 'Am': 95, 'Ar': ... -
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        AtomNumberDict

        - -
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        Value:
        - 
        -{1: ('H', 1.00794),
- 2: ('He', 4.0026),
- 3: ('Li', 6.941),
- 4: ('Be', 9.01218),
- 5: ('B', 10.811),
- 6: ('C', 12.011),
- 7: ('N', 14.0067),
- 8: ('O', 15.9994),
-...
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        AtomNameDict

        - -
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        -
        Value:
        - 
        -{'Ac': 89,
- 'Ag': 47,
- 'Al': 13,
- 'Am': 95,
- 'Ar': 18,
- 'As': 33,
- 'At': 85,
- 'Au': 79,
-...
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        Module autobackgroundselect

        source code

        -

        Automatic background selection is essential for automatic launched - refinement because in Lebail, polynomail background is not allowed to - refine; while a good simulation of background can help the automatic - refinement

        - Created on 2008.08.16

        - - - - - - - - - - - - - -
        - - - - - -
        Functions[hide private]
        -
        -   - - - - - - -
        autoBackgroundSelection(xobs, - yobs, - peakpositionslist, - stepsize)
        - Function: Select background points automatically from an input pattern - -Notice that Lebail only works with single-phase model at this time! - -Status: the algorithm is in protype status - -Algorithm 1: -1.        		 - source code - -
        - -
        -   - - - - - - -
        filterBackgroundPoints(bkgdlist, - excludedregionslist, - maxnumpoints=20)
        - Filter out the background points which - 1.        		 - source code - -
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        - - - - - -
        Variables[hide private]
        -
        -   - - __id__ = '$Id: autobackgroundselect.py 2792 2009-03-02 15:56:4... -
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        -
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        - -
        - - -
        -

        autoBackgroundSelection(xobs, - yobs, - peakpositionslist, - stepsize) -

        -         		source code  -
        - - 
        -Function: Select background points automatically from an input pattern
-
-Notice that Lebail only works with single-phase model at this time!
-
-Status: the algorithm is in protype status
-
-Algorithm 1:
-1. use hkl to estimate number of peaks inside range
-2. label peaks... no peak can be next to the other with 5*steps
-3. get the intensity of the smallest peaks as the maximum value of background --->  this can be problematic! 
-                                                                                    it won't work with nano particle
-4. get the smallest value between any 2 peaks
-
-Argument:
-  xobs              :   array of float, x (2theta or TOF)
-  yobs              :   array of float, y (intensity)
-  peakpositionslist :   list of float, peak positions (x)
-  step              :   float, resolution
-
-Return              :   2D array or list of 2-tuples for background selected
-
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        - -
        - -
        - - -
        -

        filterBackgroundPoints(bkgdlist, - excludedregionslist, - maxnumpoints=20) -

        -         		source code  -
        - - 
        -
-Filter out the background points which
-  1. inside excluded region
-  2. too many background
-
-Argument:
-  bkgdlist  :   list of 2-tuples as backgrounds point
-  excludedregionslist:  list of 2-tuples as excluded region
-  maxnumpoints :   int, number of background points remained
-
-Return      :   list of 2-tuples as selected background point
-
-
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        Source Code for Module srrietveld.autobackgroundselect

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2008 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Wenduo Zhou 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14   
- 15  """ 
- 16  Automatic background selection is essential for automatic launched refinement 
- 17  because in Lebail, polynomail background is not allowed to refine; 
- 18  while a good simulation of background can help the automatic refinement 
- 19   
- 20  Created on  2008.08.16 
- 21  """ 
- 22  __id__ = "$Id: autobackgroundselect.py 2792 2009-03-02 15:56:43Z wdzhou $" 
- 23   
-
         24 -def autoBackgroundSelection(xobs, yobs, peakpositionslist, stepsize): 
-
         25      """ Function: Select background points automatically from an input pattern 
- 26   
- 27      Notice that Lebail only works with single-phase model at this time! 
- 28   
- 29      Status: the algorithm is in protype status 
- 30   
- 31      Algorithm 1: 
- 32      1. use hkl to estimate number of peaks inside range 
- 33      2. label peaks... no peak can be next to the other with 5*steps 
- 34      3. get the intensity of the smallest peaks as the maximum value of background --->  this can be problematic!  
- 35                                                                                          it won't work with nano particle 
- 36      4. get the smallest value between any 2 peaks 
- 37   
- 38      Argument: 
- 39        xobs              :   array of float, x (2theta or TOF) 
- 40        yobs              :   array of float, y (intensity) 
- 41        peakpositionslist :   list of float, peak positions (x) 
- 42        step              :   float, resolution 
- 43   
- 44      Return              :   2D array or list of 2-tuples for background selected 
- 45      """ 
- 46      def findPositionIndex(xobs, peakpos): 
- 47          """ 
- 48          Find a position (discrete) nearest to peakpos 
- 49   
- 50          Argument: 
- 51   
- 52          Return  :   integer, index 
- 53          """ 
- 54   
- 55          x0 = xobs[0] 
- 56          xf = xobs[-1] 
- 57          dx = xobs[1]-xobs[0] 
- 58          startindex = int( (peakpos-x0)/dx ) 
- 59   
- 60          if 0:   # debug 
- 61              print "findpeakposition():  x0 = %-10s  xf = %-10s dx = %-10s start = %-5s"% (x0, xf, dx, startindex) 
- 62   
- 63          found = False 
- 64          leftindex  = startindex 
- 65          rightindex = startindex 
- 66          hitleft  = False 
- 67          hitright = False 
- 68          while found is False: 
- 69              # left: 
- 70              try: 
- 71                  ld1 = xobs[leftindex]-peakpos 
- 72                  ld2 = peakpos-xobs[leftindex-1] 
- 73                  if ld1 >= 0 and ld2 >= 0: 
- 74                      if ld1 < ld2: 
- 75                          return leftindex 
- 76                      else: 
- 77                          return leftindex-1 
- 78   
- 79                  if 0: 
- 80                      print "Left:  d1 = %-10s  d2 = %-10s  for (%-10s, %-10s) finding %-10s  init = %-10s"% \ 
- 81                          (ld1, ld2, xobs[leftindex-1], xobs[leftindex+1], peakpos, xobs[startindex]) 
- 82   
- 83              except IndexError, err: 
- 84                  hitleft = True 
- 85                  if 0: 
- 86                      errmsg = "index = (%-5s, %-5s) between (%-10s, out)"% (leftindex, leftindex-1, xobs[leftindex]) 
- 87                      print errmsg 
- 88                      raise IndexError, err 
- 89                  return leftindex 
- 90   
- 91              # right: 
- 92              try: 
- 93                  rd1 = peakpos-xobs[rightindex] 
- 94                  rd2 = xobs[rightindex+1]-peakpos 
- 95                  if rd1 >= 0 and rd2 >= 0: 
- 96                      if rd1 < rd2:  
- 97                          return rightindex 
- 98                      else: 
- 99                          return rightindex+1 
-100   
-101                  if 0: 
-102                      print "right: d1 = %-10s  d2 = %-10s  for (%-10s, %-10s) finding %-10s"% \ 
-103                          (rd1, rd2, xobs[rightindex], xobs[rightindex+1], peakpos) 
-104   
-105              except IndexError, err: 
-106                  hitright= True 
-107                  if 0: 
-108                      errmsg = "index = (%-5s, %-5s) between (%-10s, out)"% (rightindex, rightindex+1, xobs[rightindex]) 
-109                      print errmsg 
-110                      raise IndexError, err 
-111                  return rightindex 
-112   
-113              leftindex  =  leftindex-1 
-114              rightindex += 1 
-115   
-116              if hitright is True and hitleft is True: 
-117                  raise NotImplementedError("Now... Something Wrong") 
-
        118   
-119      # END FUNCTION: def findPositionIndex() 
-120   
-121   
-122      def searchMax(xobs, yobs, peakpos, searchrange): 
-123          """ 
-124          Search Max. value around a given peak position within a certain of search range 
-125   
-126          Argument: 
-127          - xobs          :   array of float 
-128          - yobs          :   array of float 
-129          - peakpos       :   float 
-130          - searchrange   :   float  
-131   
-132          Return          :   integer, as index in xobs/yobs 
-133          """ 
-134          startindex = findPositionIndex(xobs, peakpos) 
-135          continueSearch = True 
-136          maxY = yobs[startindex] 
-137          peakindex  = startindex 
-138          leftindex  = startindex-1 
-139          rightindex = startindex+1 
-140   
-141          if 0: 
-142              print "starting from   %-10s    with height = %-10s"% (xobs[startindex], yobs[startindex]) 
-143   
-144          while continueSearch is True: 
-145              # 1. take care of out-of-bound 
-146              if leftindex >= 0: 
-147                  leftY  = yobs[leftindex] 
-148              else: 
-149                  leftY  = 0.0 
-150              if rightindex < len(yobs): 
-151                  rightY = yobs[rightindex] 
-152              else: 
-153                  rightY = 0.0 
-154   
-155              # 2. select 
-156              if leftY > maxY and leftY > rightY: 
-157                  maxY = leftY 
-158                  peakindex = leftindex 
-159              elif rightY > maxY and rightY > leftY: 
-160                  maxY = rightY 
-161                  peakindex = rightindex 
-162   
-163              leftindex  -= 1 
-164              rightindex += 1 
-165   
-166              if leftindex < 0 and rightindex >= len(yobs): 
-167                  continueSearch = False 
-168              elif abs(xobs[leftindex]-peakpos) >= searchrange: 
-169                  continueSearch = False 
-170   
-171          if 0:   # debug 
-172              print "searchMax():  peakpos = %-10s, searchrange = %-10s => peak @ %-10s, with height %-10s"%  \ 
-173                  (peakpos, searchrange, xobs[peakindex], yobs[peakindex]) 
-174   
-175          return peakindex 
-176      # END FUNCTION: searchMax() 
-177   
-178      def searchMin(xobs, yobs, leftbound, rightbound): 
-179          """ 
-180          Search for the minimum value between two spots 
-181   
-182          Arguments: 
-183          - xobs      :   array, float 
-184          - yobs      :   array, float 
-185          - leftbound :   integer,  
-186          - rightbound:   integer 
-187   
-188          Return      :   integer, index of lowest point 
-189          """ 
-190          minindex = leftbound 
-191          minY     = yobs[leftbound] 
-192          for xindex in xrange(leftbound+1, rightbound+1): 
-193              if yobs[xindex] < minY: 
-194                  minY = yobs[xindex] 
-195                  minindex = xindex 
-196   
-197          if 0:   # debug 
-198              print "In Range (%-10s, %-10s) Find Min @ %-10s  with Height %-10s"% \ 
-199                  (xobs[leftbound], xobs[rightbound], xobs[minindex], yobs[minindex]) 
-200   
-201          return minindex 
-202      # END FUNCTION: searchMin(xobs, yobs, leftbound, rightbound) 
-203   
-204      Eta = 0 
-205      pos_start = 5 
-206   
-207      numpeaks = len(peakpositionslist) 
-208   
-209   
-210      # 1.    search peak 
-211      # 1.1   find the distance between peaks 
-212      peakdistanceslist = []   
-213      thmin   = xobs[0] 
-214      thmax   = xobs[-1] 
-215      mindist = -1.0 
-216      for n in xrange(numpeaks+1): 
-217          if n == 0: 
-218              dist = peakpositionslist[n]-thmin 
-219          elif n == numpeaks: 
-220              dist = thmax-peakpositionslist[n-1] 
-221          else:    
-222              dist = peakpositionslist[n]-peakpositionslist[n-1] 
-223          if dist < mindist or mindist < 0: 
-224              mindist = dist 
-225      # LOOP-OVER:  for n in xrange(numpeaks+1): 
-226     
-227      # 1.2   search for peak 
-228      searchrange = mindist/2.1  
-229      realpeaks   = [] 
-230      for peakpos in peakpositionslist: 
-231          peakposindex = searchMax(xobs, yobs, peakpos, searchrange) 
-232          realpeaks.append(peakposindex) 
-233   
-234      if 0:   # debug 
-235          for realpeak in realpeaks: 
-236              print "%-10s  %-10s"% (xobs[realpeak], yobs[realpeak]) 
-237   
-238      # 2.    search background 
-239      bkgdposindexlist = [] 
-240      for n in xrange(numpeaks+1): 
-241          if n == 0: 
-242              leftbound  = 0 
-243              rightbound = realpeaks[n] 
-244          elif n == numpeaks: 
-245              leftbound  = realpeaks[n-1] 
-246              rightbound = len(xobs)-1 
-247          else:    
-248              leftbound  = realpeaks[n-1] 
-249              rightbound = realpeaks[n] 
-250          bkgdindex = searchMin(xobs, yobs, leftbound, rightbound) 
-251          bkgdposindexlist.append(bkgdindex) 
-252   
-253      if 0:   # debug 
-254          for bkgdindex in bkgdposindexlist: 
-255              print "%-10s  %-10s"% (xobs[bkgdindex], yobs[bkgdindex]) 
-256   
-257      # 3. filter out twin peaks... 
-258      #    FIXME  it will fail for triple peaks 
-259      selbackgroundslist = [] 
-260   
-261      for n in xrange(0, numpeaks+1): 
-262          curindex = bkgdposindexlist[n] 
-263          x = xobs[curindex] 
-264          y = yobs[curindex] 
-265   
-266          goodbackground = True 
-267          if n > 0 and n < numpeaks: 
-268              # filter   
-269              leftbkgd  = yobs[ bkgdposindexlist[n-1] ] 
-270              rightbkgd = yobs[ bkgdposindexlist[n+1] ] 
-271              currbkgd  = yobs[ bkgdposindexlist[n]   ] 
-272   
-273              leftpeak  = yobs[ realpeaks[n-1]        ] 
-274              rightpeak = yobs[ realpeaks[n]          ] 
-275   
-276              if leftpeak < rightpeak: 
-277                  currheight = leftpeak-y 
-278              else: 
-279                  currheight = rightpeak-y 
-280              leftheight  = leftpeak-leftbkgd 
-281              rightheight = rightpeak-rightbkgd 
-282              if rightheight < leftheight: 
-283                  stdheight = rightheight 
-284              else: 
-285                  stdheight = leftheight 
-286   
-287              if currheight <= 0: 
-288                  goodbackground = False 
-289   
-290              elif currheight < stdheight * 0.50: 
-291                  goodbackground = False 
-292   
-293              if currbkgd > leftbkgd and currbkgd > rightbkgd: 
-294                  goodbackground = False 
-295          else: 
-296              # the first and last points are selected always 
-297              pass 
-298   
-299          # END IF: selection 
-300          if goodbackground is True: 
-301              selbackgroundslist.append( (x, y) ) 
-302              # print "Select x = %-15s   %-15s"% (x, y) 
-303          else: 
-304              # print "Neglect x = %-15s   %-15s"% (x, y) 
-305              pass 
-306   
-307      # LOOP-OVER  for n in xrange(0, numpeaks+1) 
-308   
-309      if 0:    
-310          # Debug stop 
-311          errmsg = "# of Background Points = %-10s"% (len(selbackgroundslist)) 
-312          raise NotImplementedError(errmsg) 
-313   
-314      return selbackgroundslist 
-315   
-316   
-317   
-
        318 -def filterBackgroundPoints(bkgdlist, excludedregionslist, maxnumpoints=20): 
-
        319      """ 
-320      Filter out the background points which 
-321        1. inside excluded region 
-322        2. too many background 
-323   
-324      Argument: 
-325        bkgdlist  :   list of 2-tuples as backgrounds point 
-326        excludedregionslist:  list of 2-tuples as excluded region 
-327        maxnumpoints :   int, number of background points remained 
-328   
-329      Return      :   list of 2-tuples as selected background point 
-330      """ 
-331      # 1. Excluded region 
-332      # FIXME  This is not good algorithm.  Need to figure out a good one 
-333      bkgdpoints1 = [] 
-334      for bkgd in bkgdlist: 
-335          x = bkgd[0] 
-336          notexcluded = True 
-337          for region in excludedregionslist: 
-338              begin = region[0] 
-339              end   = region[1] 
-340              if x > begin and x < end: 
-341                  notexcluded = False 
-342          if notexcluded is True: 
-343              bkgdpoints1.append(bkgd) 
-344   
-345      # 2. Filter out the high points 
-346      # FIXME  Need more experiement to get a good algorithm of this step 
-347   
-348      # 3. Filter out the extra points 
-349      bkgdpoints2 = [] 
-350      curnumpoints = len(bkgdpoints1) 
-351      lap = curnumpoints/maxnumpoints 
-352      if lap >= 2: 
-353          for i in xrange(maxnumpoints): 
-354              index = i*lap 
-355              if index < curnumpoints: 
-356                  bkgdpoints2.append(bkgdpoints1[index]) 
-357   
-358      else: 
-359          bkgdpoints2 = bkgdpoints1 
-360   
-361      return bkgdpoints2 
-
        362   
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        Module auxiliary

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        -
        -Auxiliary functions for 
-  1. string processing
-  2. searching/sorting
-
-Methods List:
-  I. String
-    *  optionToString(options)
-    *  readOption(options, argv)
-
-  II. Searching/Sorting
-    *  getValueIndex(datalist, value):
-
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        - convert an option-dictionary to string for neat output        		 - source code - -
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        readOption(options, - argv)
        - this is a general-purposed function to parse the input - arguments        		 - source code - -
        - -
        -   - - - - - - -
        getValueIndex(datalist, - value)
        - Get the index of value in a list closest to given value...        		 - source code - -
        - -
        -   - - - - - - -
        getHomeValueIndex(datalist, - value, - begin=0, - end=None)
        - Get the index of value in a list closest to given value...        		 - source code - -
        - -
        -   - - - - - - -
        searchdict(infodict, - key)
        - Search a key value in a multiple-level dictionary...        		 - source code - -
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        optionToString(options) -

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        convert an option-dictionary to string for neat output

        -

        options : dictionary, standard option dictionary value - list or - tuple as: explanation, variable name in client function (recommended), - and number of element following this option number of elements following - the option = 0, boolean * number of elements following the option = 1, - string **

        - Return -- String -
        -
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        -
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        - - -
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        readOption(options, - argv) -

        -         		source code  -
        - -

        this is a general-purposed function to parse the input arguments

        -

        Arguments: options : dictionary, must conformed to some stardards as - explained in note 1 argv : list of strings

        -

        Return - list of strings (*) or boolean value (**) in the ascending - order of parameter-name

        - Note 1: the format of each element in dictionary options must be of - this format key - option name value - list or tuple as: - explanation, variable name in client function (recommended), and number - of element following this option number of elements following the option - = 0, boolean * number of elements following the option = 1, string - ** -
        -
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        getValueIndex(datalist, - value) -

        -         		source code  -
        - - 
        -Get the index of value in a list closest to given value
-
-Argument:
-  datalist  :   list/array
-  value     :   any vale
-
-Return      :   int
-
-
        -
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        getHomeValueIndex(datalist, - value, - begin=0, - end=None) -

        -         		source code  -
        - - 
        -Get the index of value in a list closest to given value
-
-Argument:
-  datalist  :   list/array
-  value     :   any vale
-  begine    :   int
-  end       :   end
-
-Return      :   int
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        searchdict(infodict, - key) -

        -         		source code  -
        - - 
        -
-Search a key value in a multiple-level dictionary
-
-Argument:
-  key   :   str
-
-Return  :   list of tuple (parname, parvalue)
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        Source Code for Module srrietveld.auxiliary

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2008 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Wenduo Zhou 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14  """ Auxiliary functions for  
- 15    1. string processing 
- 16    2. searching/sorting 
- 17   
- 18  Methods List: 
- 19    I. String 
- 20      *  optionToString(options) 
- 21      *  readOption(options, argv) 
- 22   
- 23    II. Searching/Sorting 
- 24      *  getValueIndex(datalist, value): 
- 25  """ 
- 26  __id__ = "$Id: auxiliary.py 2899 2009-03-16 19:10:09Z wdzhou $" 
- 27   
- 28  _DEBUGMODE = True 
- 29   
- 30  # I  String Processing 
-
         31 -def optionToString(options): 
-
         32      """ 
- 33      convert an option-dictionary to string for neat output 
- 34   
- 35      options :   dictionary, standard option dictionary 
- 36      value   - list or tuple as:  explanation, variable name in client function (recommended), and number of element following this option 
- 37      number of elements following the option = 0, boolean    * 
- 38      number of elements following the option = 1, string     ** 
- 39   
- 40      Return  --  String 
- 41      """ 
- 42      rstring = "" 
- 43      for optkey in sorted(options.keys())[:]: 
- 44          explan, name, more = options[optkey] 
- 45          tempstr = "%-10s%-10s: %-30s, Number of Arguments Followed %-5s\n"% (optkey, "", explan, more) 
- 46          rstring += tempstr 
- 47   
- 48      return rstring 
-
         49   
- 50   
-
         51 -def readOption(options, argv): 
-
         52      """ 
- 53      this is a general-purposed function to parse the input arguments 
- 54   
- 55      Arguments: 
- 56      options :   dictionary, must conformed to some stardards as explained in note 1 
- 57      argv    :   list of strings 
- 58   
- 59      Return  -   list of strings (*) or boolean value (**) in the ascending order of parameter-name 
- 60       
- 61      Note 1: the format of each element in dictionary options must be of this format 
- 62      key     - option name 
- 63      value   - list or tuple as:  explanation, variable name in client function (recommended), and number of element following this option 
- 64      number of elements following the option = 0, boolean    * 
- 65      number of elements following the option = 1, string     ** 
- 66      """ 
- 67   
- 68      # Step 1:  Initialization 
- 69      resultdict = {} 
- 70      for option in options.keys(): 
- 71          explan, name, more = options[option] 
- 72          if more == 0: 
- 73              resultdict[name] = False 
- 74          elif more == 1: 
- 75              resultdict[name] = None 
- 76          else: 
- 77              resultdict[name] = [] 
- 78     
- 79      # Step 2:  Read the arguments 
- 80      argindex  = 1 
- 81      while argindex < len(argv): 
- 82   
- 83          # 1. get (and check) the valid options 
- 84          try: 
- 85              option = argv[argindex] 
- 86              explan, name, more = options[option] 
- 87          except KeyError, err: 
- 88              errmsg = "Option %-10s Is Not Allowed"% (options[argindex]) 
- 89              raise NotImplementedError(errmsg) 
- 90   
- 91          # 2. set up the value 
- 92          if more == 0: 
- 93              # case for Bool 
- 94              resultdict[name] = True 
- 95   
- 96          elif more == 1: 
- 97              # case for 1  
- 98              argindex += 1 
- 99              try: 
-100                  resultdict[name] =  argv[argindex] 
-101              except IndexError, err: 
-102                  errmsg = "Option %-10s Must Be Followed By 1 Additional Input Argument"% (options[argindex-1]) 
-103   
-104          elif more > 1: 
-105              # case for > 1 
-106              try: 
-107                  for m in xrange(more): 
-108                      argindex += 1 
-109                      resultdict[name].append( argv[argindex] ) 
-110   
-111              except IndexError, err: 
-112                  errmsg = "Option %-10s Must Be Followed By 1 Additional Input Argument"% (options[argindex-1]) 
-113   
-114          # 3. control variable 
-115          argindex += 1 
-116            
-117      # END LOOP -- while argindex < len(argv): 
-118   
-119      # Step 3:  Sort and write 
-120      sortedkeys = sorted(resultdict.keys()) 
-121      rlist     = [] 
-122      for key in sortedkeys: 
-123          rlist.append(resultdict[key]) 
-124   
-125      return rlist 
-
        126   
-127   
-128  # II List Processing 
-129   
-
        130 -def getValueIndex(datalist, value): 
-
        131      """ Get the index of value in a list closest to given value 
-132   
-133      Argument: 
-134        datalist  :   list/array 
-135        value     :   any vale 
-136   
-137      Return      :   int 
-138      """ 
-139      import bisect 
-140   
-141      if _DEBUGMODE is True: 
-142          for dindex in xrange(1, len(datalist)): 
-143              if datalist[dindex] < datalist[dindex-1]: 
-144                  print "Error! %-5s %-10s %-10s"% (dindex, datalist[dindex], datalist[dindex]) 
-145                  raise NotImplementedError("...Here  Error!...") 
-146           
-147      index = bisect.bisect_left(datalist, value) 
-148      if index < len(datalist) and index > 0: 
-149          if datalist[index]-value < value-datalist[index-1]: 
-150              pass 
-151          else: 
-152              index = index-1 
-153          # END-IF 
-154      # END-IF 
-155   
-156      return index 
-
        157   
-158   
-
        159 -def getHomeValueIndex(datalist, value, begin=0, end=None): 
-
        160      """ Get the index of value in a list closest to given value 
-161   
-162      Argument: 
-163        datalist  :   list/array 
-164        value     :   any vale 
-165        begine    :   int 
-166        end       :   end 
-167   
-168      Return      :   int 
-169      """ 
-170      if end is None: 
-171          end = len(datalist)-1 
-172   
-173      for dindex in xrange(1, len(datalist)): 
-174          print datalist[dindex] 
-175   
-176      if begin < end-1: 
-177          mid = (begin+end)/2 
-178          # print "begin = %-10s  end = %-10s  mid = %-10s  (%-10s  %-10s  %-10s)  value = %-10s"% \ 
-179          #     (begin, end, mid, datalist[begin], datalist[mid], datalist[end], value) 
-180        
-181          try: 
-182              if value < datalist[mid]: 
-183                  rindex = getValueIndex(datalist, value, begin, mid) 
-184              elif value > datalist[mid]: 
-185                  rindex = getValueIndex(datalist, value, mid, end) 
-186              else: 
-187                  rindex = mid  
-188          except ValueError, err: 
-189              print value 
-190              print mid 
-191              raise ValueError() 
-192      else: 
-193          if value-datalist[begin] < datalist[end]-value: 
-194              rindex = begin 
-195          else: 
-196              rindex = end 
-197   
-198      return rindex 
-
        199   
-200   
-
        201 -def searchdict(infodict, key): 
-
        202      """ 
-203      Search a key value in a multiple-level dictionary 
-204   
-205      Argument: 
-206        key   :   str 
-207   
-208      Return  :   list of tuple (parname, parvalue) 
-209      """ 
-210      resultlist = [] 
-211      for keyname in infodict.keys(): 
-212          if isinstance(infodict[keyname], list): 
-213              for item in infodict[keyname]: 
-214                  thelist = searchdict(item, key) 
-215                  resultlist.extend(thelist) 
-216          elif isinstance(infodict[keyname], dict): 
-217              thelist = searchdict(infodict[keyname], key) 
-218              resultlist.extend(thelist) 
-219          else: 
-220              if keyname.lower() == key.lower(): 
-221                  resultlist.append( (infodict, keyname) ) 
-222          # END-IF-ELSE 
-223      # LOOP-OVER 
-224   
-225      return resultlist 
-
        226   
-227   
-
        228 -def testmain(): 
-
        229      """ 
-230      test main 
-231      """ 
-232      l = [1, 2, 3, 4, 5, 6, 7] 
-233       
-234      v = 0.9 
-235      index = getValueIndex(l, v) 
-236      print "%-10s  l[%-5s] =  %-10s"% (v, index, l[index]) 
-237      v = 1.9 
-238      index = getValueIndex(l, v) 
-239      print "%-10s  l[%-5s] = %-10s"% (v, index, l[index]) 
-240      v = 2.0 
-241      index = getValueIndex(l, v) 
-242      print "%-10s  l[%-5s] = %-10s"% (v, index, l[index]) 
-243      v = 2.2 
-244      index = getValueIndex(l, v) 
-245      print "%-10s  l[%-5s] = %-10s"% (v, index, l[index]) 
-246      v = 3.4 
-247      index = getValueIndex(l, v) 
-248      print "%-10s  l[%-5s] = %-10s"% (v, index, l[index]) 
-249      v = 7.0 
-250      index = getValueIndex(l, v) 
-251      print "%-10s  l[%-5s] = %-10s"% (v, index, l[index]) 
-252      v = 9.0 
-253      index = getValueIndex(l, v) 
-254      print "%-10s  l[%-5s] = %-10s"% (v, index, l[index]) 
-255   
-256      return 
-
        257   
-258   
-259  if __name__=="__main__": 
-260      testmain() 
-261   
-
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           Home      Trees      Indices      Help   
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        - - Package srrietveld :: - Module datafileconverter - - - - - - -
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        - -

        Module datafileconverter

        source code

        -
        -Data file parser classified by instrument
-
-Level 1:      DataFileParser
-  |             - __init__(self, datafilename)
-  |             - parseDataFile(self)
-  |             - _parse(self)
-  |             - getData(self)
-  |
-  |- Leve 2:    RAPDFParser
-  |
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Classes[hide private]
        -
        -   - - DataFileParser
        - Virtual base class of Parer of data file... -
        -   - - GEMDataParser
        - Data file parser for GEM data... -
        -   - - XYSigmaFileParser
        - Data file parser for X-Y-Sigma format -
        -   - - RAPDFDataParser
        - Data file parser for RaPDF data... -
        -   - - NPDFDataParser
        - Data file parser for RaPDF data... -
        -   - - FullProfFreeFormatParser
        - Data file parser for Fullprof free format data file -
        - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Functions[hide private]
        -
        -   - - - - - - -
        dataFileFormat(datafilename)
        - Judge the format of the data file - -Argument: -- datafilename : str - -Return : str, such as "CHI", "DAT", ...        		 - source code - -
        - -
        -   - - - - - - -
        convertChiToGSAS(datafilename, - targetfullname=None)
        - Convert CHI file to specific data format related to refinement engine...        		 - source code - -
        - -
        -   - - - - - - -
        convertChiToXYSigma(origfullname, - targetfullname=None, - filenameroot=None, - newdir='')
        - Convert the 2 column chi file to 3-column XYSigma File ...        		 - source code - -
        - -
        -   - - - - - - -
        convertXYSigmaToChi(datafilename)
        - Convert the 3-column XYSigma file to 2-column Chi File ...        		 - source code - -
        - -
        - - - - - - - - - -
        - - - - - -
        Variables[hide private]
        -
        -   - - __id__ = '$Id: datafileconverter.py 2920 2009-03-19 23:49:26Z ... -
        - - - - - - -
        - - - - - -
        Function Details[hide private]
        -
        - -
        - -
        - - -
        -

        dataFileFormat(datafilename) -

        -         		source code  -
        - - 
        -
-Judge the format of the data file
-
-Argument:
-- datafilename  :   str
-
-Return          :   str, such as "CHI", "DAT", ...
-                    - DAT:  Fullprof readable
-                    - GSA:  GSAS readable
-                    - CHI:  RAPDF Chi File
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        convertChiToGSAS(datafilename, - targetfullname=None) -

        -         		source code  -
        - - 
        -
-Convert CHI file to specific data format related to refinement engine
-
-Argument:
-- datafilename
-
-Return  :   str, new file name
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        convertChiToXYSigma(origfullname, - targetfullname=None, - filenameroot=None, - newdir='') -

        -         		source code  -
        - - 
        -
-Convert the 2 column chi file to 3-column XYSigma File 
-Complied to Fullprof format
-
-Argument:
-- origfullname  :   str, full name with path
-- targetfullname:   str, full name with path
-- filenameroot  :   str
-- newdir        :   str
-
-Return          :   str, new file name
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        convertXYSigmaToChi(datafilename) -

        -         		source code  -
        - - 
        -
-Convert the 3-column XYSigma file to 2-column Chi File 
-Transfer FullProf format to GSAS format
-
-Argument:
-- datafilename
-
-Return          :   str, chi file name
-
-
        -
        -
        -
        -
        -
        - - - - - - -
        - - - - - -
        Variables Details[hide private]
        -
        - -
        - -
        -

        __id__

        - -
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        Value:
        - 
        -'$Id: datafileconverter.py 2920 2009-03-19 23:49:26Z wdzhou $'
-
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.datafileconverter-pysrc.html b/static_root/doc/srrietveld/developers/srrietveld.datafileconverter-pysrc.html deleted file mode 100644 index 10615782..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.datafileconverter-pysrc.html +++ /dev/null @@ -1,1238 +0,0 @@ - - - - - srrietveld.datafileconverter - - - - - - - - - - - - - - - - - - - - - - -
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        Source Code for Module srrietveld.datafileconverter

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2008 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Wenduo Zhou 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14   
- 15  """ Data file parser classified by instrument 
- 16   
- 17    Level 1:      DataFileParser 
- 18      |             - __init__(self, datafilename) 
- 19      |             - parseDataFile(self) 
- 20      |             - _parse(self) 
- 21      |             - getData(self) 
- 22      | 
- 23      |- Leve 2:    RAPDFParser 
- 24      | 
- 25  """ 
- 26   
- 27  __id__ = "$Id: datafileconverter.py 2920 2009-03-19 23:49:26Z wdzhou $" 
- 28   
- 29  import os 
- 30  import math 
- 31   
-
         32 -class DataFileParser: 
-
         33      """ Virtual base class of Parer of data file 
- 34   
- 35      Instantiation:  
- 36        DataFileParser(datafilename) 
- 37      """ 
-
         38 -    def __init__(self, datafilename = None): 
-
         39          """ Initialization of DataFileParser 
- 40   
- 41          Argument: 
- 42            datafilename  :   str, data file name 
- 43   
- 44          Return          :   None 
- 45          """ 
- 46          # 1. virtual base class and input validation 
- 47          selfclassname = self.__class__.__name__ 
- 48          if selfclassname == "DataFileParser": 
- 49              errmsg = "Virtual class %-10s Cannot be Initialized"% \ 
- 50                  (selfclassname) 
- 51              raise NotImplementedError(errmsg) 
- 52          # END-IF 
- 53   
- 54          # 2. Import data file if file name is given 
- 55          if datafilename is not None: 
- 56              self.setInputFileName(datafilename) 
- 57          # END-IF 
- 58   
- 59          return 
-
         60   
- 61   
-
         62 -    def setInputFileName(self, datafilename): 
-
         63          """ Set the input data file name to parse 
- 64          and parse it! 
- 65   
- 66          Argument: 
- 67            datafilename  :   str 
- 68   
- 69          Return          :   None 
- 70          """ 
- 71          # 1 Check input valid or not 
- 72          if not isinstance(datafilename, str): 
- 73              errmsg = "DataFileParser(datafilename): datafilename must be str. " + \ 
- 74                      "Input is of type %-10s" % (datafilename.__class__.__name__) 
- 75              raise NotImplementedError, errmsg 
- 76          else: 
- 77              self._dfname = datafilename 
- 78   
- 79          # 2 import and parse file 
- 80          self.parseDataFile() 
- 81   
- 82          return 
-
         83   
-
         84 -    def parseDataFile(self): 
-
         85          """ 
- 86          Parse the data file 
- 87   
- 88          General base class method 
- 89   
- 90          Return  :   None 
- 91          """ 
- 92          # 1. read file 
- 93          if self._dfname.lower().count(".dat") != 1: 
- 94              datafilename = self._dfname.split(".")[0]+".dat" 
- 95              errmsg = "Warning!  1134  File %-30s Is Not Attempted To Open"% (self._dfname) 
- 96              print errmsg 
- 97          else: 
- 98              datafilename = self._dfname 
- 99          dfile = open(datafilename, "r") 
-100          self._lines = dfile.readlines() 
-101          dfile.close() 
-102   
-103          # 2. parse data file 
-104          self._parse() 
-105   
-106          return 
-
        107   
-108   
-
        109 -    def _parse(self): 
-
        110          """ 
-111          Virtual method to parse the data from a list of lines 
-112           
-113          Return  :   None 
-114          """ 
-115          errmsg = "Method _parse() of class %-10s is Virtual"% \ 
-116              (self.__class__.__name__) 
-117          raise NotImplementedError(errmsg) 
-
        118   
-119   
-
        120 -    def importData(self, xs, ys, ss): 
-
        121          """ Import the array (x, y, sigma) to self 
-122   
-123          Argument: 
-124            xs    :   dict.  key = int, (bank)  value = array 
-125            ys    :   dict.  key = int, (bank)  value = array 
-126            ss    :   dict.  key = int, (bank)  value = array 
-127   
-128          Return  :   None 
-129          """ 
-130          self._xs = xs 
-131          self._ys = ys 
-132          self._ss = ss 
-133   
-134          return 
-
        135   
-136   
-
        137 -    def exportData(self): 
-
        138          """ Export the data 
-139   
-140          Return  :   list of 3-tuples as (x, y, sigma) 
-141          """ 
-142          return (self._xs, self._ys, self._ss) 
-
        143   
-144   
-
        145 -    def writeToFile(self, filename): 
-
        146          """ Write the data to a file in the specific format 
-147   
-148          Argument: 
-149            filename  :   str 
-150   
-151          Return      :   None 
-152          """ 
-153          errmsg = "DataFileParser.writeToFile() is virtual. " + \ 
-154                  "Implement %-20s's writeToFile() to override" % \ 
-155                  (self.__class__.__name__) 
-156          raise NotImplementedError, errmsg 
-
        157   
-158  # END-DEF Class  
-159   
-160   
-
        161 -class GEMDataParser(DataFileParser): 
-
        162      """ Data file parser for GEM data 
-163   
-164      RaPDF data format is defined as 
-165      X-Y-Sigma 
-166   
-167      Class Variable: 
-168        *  _xs  
-169        *  _ys  
-170        *  _ss  
-171   
-172      """ 
-
        173 -    def __init__(self, datafilename = None): 
-
        174          """ Initialization of GEMDataParser 
-175   
-176          Argument: 
-177            datafilename  :   str, data file name 
-178   
-179          Return          :   None 
-180          """ 
-181          # 1. Init data structure 
-182          self._xs = {} 
-183          self._ys = {} 
-184          self._ss = {} 
-185   
-186          # 2. Call base class init 
-187          DataFileParser.__init__(self, datafilename) 
-188   
-189          return 
-
        190   
-191   
-
        192 -    def _parse(self): 
-
        193          """ 
-194          Method to parse the GEM data from a list of lines 
-195           
-196          Return  :   None 
-197          """ 
-198          # 1. Split all lines to banks 
-199          bankstart = {} 
-200          bankend   = {} 
-201          numlines   = len(self._lines) 
-202          bankindex  = 0 
-203          for lindex in xrange(1, numlines): 
-204              if self._lines[lindex][0] == "B": 
-205                  bankend[bankindex]   = lindex-1 
-206                  bankindex += 1 
-207                  bankstart[bankindex] = lindex 
-208   
-209          bankend[bankindex] = numlines-1 
-210          self._numbanks = bankindex 
-211   
-212          if 0: 
-213              for bindex in xrange(1, self._numbanks+1): 
-214                  print "(%-10s,  %-10s)"% (bankstart[bindex], bankend[bindex]) 
-215   
-216          # 2. Intepret bank 
-217          self._info = self._lines[0] 
-218   
-219          for bindex in xrange(1, self._numbanks+1): 
-220              # 2.1 Init all array 
-221              self._xs[bindex] = [] 
-222              self._ys[bindex] = [] 
-223              self._ss[bindex] = [] 
-224   
-225              # 2.2 Intepret all lines 
-226              infoline = self._lines[bankstart[bindex]] 
-227              for lindex in xrange(bankstart[bindex]+1, bankend[bindex]+1): 
-228                  terms = self._lines[lindex].split() 
-229                  x = float(terms[0]) 
-230                  y = float(terms[1]) 
-231                  s = float(terms[2]) 
-232                  self._xs[bindex].append(x) 
-233                  self._ys[bindex].append(y) 
-234                  self._ss[bindex].append(s) 
-235              # LOOP-OVER: for lindex in xrange(bankstart[bindex]+1, bankend[bindex]+1): 
-236   
-237              if infoline.count("RALF") == 1: 
-238                  for i in xrange(1, len(self._xs[bindex])): 
-239                      self._ys[bindex][i] = self._ys[bindex][i]/(self._xs[bindex][i]-self._xs[bindex][i-1]) 
-240                      self._ss[bindex][i] = self._ys[bindex][i]/(self._xs[bindex][i]-self._xs[bindex][i-1]) 
-241   
-242              if 1:   # debug output 
-243                  print "1132:  Debug output bank?.dat in GEM" 
-244                  fname   = "bank"+str(bindex)+".dat" 
-245                  outputs = "" 
-246                  for i in xrange(len(self._xs[bindex])): 
-247                      outputs += "%-15s  %-15s  %-15s\n"% \ 
-248                          (self._xs[bindex][i], self._ys[bindex][i], self._ss[bindex][i]) 
-249                  ofile = open(fname, "w") 
-250                  ofile.write(outputs) 
-251                  ofile.close() 
-252   
-253          return 
-
        254   
-255  # END-DEF Class GEMDataParser 
-256   
-257   
-
        258 -class XYSigmaFileParser(DataFileParser): 
-
        259      """ Data file parser for X-Y-Sigma format 
-260      """ 
-
        261 -    def __init__(self, datafilename = None): 
-
        262          """ Initialization of XYSigmaFileParser 
-263   
-264          Argument: 
-265          - datafilename  :   str, data file name 
-266   
-267          Return          :   None 
-268          """ 
-269          self._xs = {} 
-270          self._ys = {} 
-271          self._ss = {} 
-272   
-273          self._banklist = [0] 
-274   
-275          for bankid in self._banklist: 
-276              self._xs[bankid] = [] 
-277              self._ys[bankid] = [] 
-278              self._ss[bankid] = [] 
-279   
-280          # 2. Call base class init 
-281          DataFileParser.__init__(self, datafilename)  
-282   
-283          return 
-
        284   
-285   
-
        286 -    def _parse(self): 
-
        287          """ 
-288          Virtual method to parse the data from a list of lines 
-289           
-290          Return  :   None 
-291          """ 
-292          for line in self._lines: 
-293              cline = line.split("\n")[0] 
-294              if len(cline) > 0: 
-295                  if cline[0] != "#": 
-296                      terms = cline.split() 
-297                      x = float(terms[0]) 
-298                      y = float(terms[1]) 
-299                      s = float(terms[2]) 
-300                       
-301                      self._xs[0].append(x) 
-302                      self._ys[0].append(y) 
-303                      self._ss[0].append(s) 
-304          # LOOP-OVER: for line in self._lines 
-305   
-306          return 
-
        307   
-308   
-
        309 -    def writeToFile(self, filename, comments = None): 
-
        310          """ Write the data to a file in the specific format 
-311   
-312          Argument: 
-313          - filename  :   str 
-314          - comments  :   list, of string for put comments to data file 
-315   
-316          Return      :   None 
-317          """ 
-318          wbuf = "" 
-319   
-320          # 1. comment line 
-321          if comments is None: 
-322              comments = [] 
-323          for i in range(6): 
-324              wbuf += "#" 
-325              try: 
-326                  wbuf += "%-30s\n" % (comments[i]) 
-327              except IndexError, err: 
-328                  wbuf += "\n" 
-329          # LOOP-OVER 
-330   
-331          # 2. data line 
-332          lendata = min(len(self._xs[0]), len(self._ys[0]), len(self._ss[0])) 
-333          for i in range(lendata): 
-334              wbuf += "%-15s  %-15s  %-15s\n" % (self._xs[0][i],  
-335                      self._ys[0][i], self._ss[0][i]) 
-336          # LOOP-OVER 
-337   
-338          # 3. write to file 
-339          ofile = open(filename, "w") 
-340          ofile.write(wbuf) 
-341          ofile.close() 
-342   
-343          return 
-
        344                   
-345  # END-CLASS-DEF XYSigmaFileParser 
-346   
-347   
-
        348 -class RAPDFDataParser(XYSigmaFileParser): 
-
        349      """ 
-350      Data file parser for RaPDF data 
-351   
-352      RaPDF data format is defined as 
-353      X-Y-Sigma 
-354   
-355      Class Variable: 
-356      -  _xs  
-357      -  _ys  
-358      -  _ss  
-359   
-360      """ 
-
        361 -    def __init__(self, datafilename = None): 
-
        362          """ 
-363          Initialization 
-364   
-365          Argument: 
-366          - datafilename  :   str, data file name 
-367   
-368          Return          :   None 
-369          """ 
-370          XYSigmaFileParser.__init__(self, datafilename) 
-371   
-372          return 
-
        373   
-374   
-
        375 -class NPDFDataParser(XYSigmaFileParser): 
-
        376      """ 
-377      Data file parser for RaPDF data 
-378   
-379      RaPDF data format is defined as 
-380      X-Y-Sigma 
-381   
-382      Class Variable: 
-383      -  _xs  
-384      -  _ys  
-385      -  _ss  
-386   
-387      """ 
-
        388 -    def __init__(self, datafilename = None): 
-
        389          """ Initialization 
-390   
-391          Argument: 
-392            datafilename  :   str, data file name 
-393   
-394          Return          :   None 
-395          """ 
-396          XYSigmaFileParser.__init__(self, datafilename) 
-397   
-398          return 
-
        399   
-400   
-
        401 -class FullProfFreeFormatParser(DataFileParser): 
-
        402      """ Data file parser for Fullprof free format data file 
-403      """ 
-
        404 -    def __init__(self, datafilename = None): 
-
        405          """ Initialization of FullProfFreeFormatParser 
-406          """ 
-407          self._xs = {} 
-408          self._ys = {} 
-409          self._ss = {} 
-410   
-411          self._banklist = [0] 
-412   
-413          for bankid in self._banklist: 
-414              self._xs[bankid] = [] 
-415              self._ys[bankid] = [] 
-416              self._ss[bankid] = [] 
-417   
-418          # 2. Call base class init 
-419          DataFileParser.__init__(self, datafilename)  
-420   
-421          return 
-
        422   
-423   
-
        424 -    def _parse(self): 
-
        425          """ 
-426          Parse the data from a list of lines and store the result to 
-427          _xs, _ys, _ss 
-428          Override parents method 
-429   
-430          Return  :   None 
-431          """ 
-432          # 1. Filter out all digit 
-433          allterms = [] 
-434          for line in self._lines: 
-435              cline = line.split("\n")[0] 
-436              partterms = cline.split() 
-437              allterms.extend(partterms) 
-438          # LOOP-OVER 
-439   
-440          # 2. Digit only 
-441          digitterms = [] 
-442          for term in allterms: 
-443              try: 
-444                  digitterms.append(term) 
-445              except ValueError, err: 
-446                  print term 
-447          # LOOP-OVER 
-448   
-449          # 3. Convert 
-450          x0 = float(digitterms[0]) 
-451          xf = float(digitterms[2]) 
-452          stepsize = float(digitterms[1]) 
-453          numsteps = int((xf-x0)/stepsize) 
-454   
-455          if 1: 
-456              print "5:13  numstep - num-points = %-5s" % (len(digitterms)-3-numsteps) 
-457              print "5:13  %-5s      %-5s             " % (len(digitterms), numsteps) 
-458   
-459          # 4. Generate 
-460          for i in xrange(3, len(digitterms)): 
-461              # a) get data value 
-462              y = float(digitterms[i]) 
-463              x = x0 + stepsize * (i-3) 
-464              s = math.sqrt(y) 
-465              # b) store values 
-466              self._xs[0].append(x) 
-467              self._ys[0].append(y) 
-468              self._ss[0].append(s) 
-469          # LOOP-OVER 
-470   
-471          return  
-
        472   
-473   
-474  """ 
-475  External Methods 
-476  """ 
-
        477 -def dataFileFormat(datafilename): 
-
        478      """ 
-479      Judge the format of the data file 
-480   
-481      Argument: 
-482      - datafilename  :   str 
-483   
-484      Return          :   str, such as "CHI", "DAT", ... 
-485                          - DAT:  Fullprof readable 
-486                          - GSA:  GSAS readable 
-487                          - CHI:  RAPDF Chi File 
-488      """ 
-489      lowname = datafilename.lower() 
-490      terms = lowname.split(".") 
-491   
-492      if terms[-1] == "chi": 
-493          rstr = "CHI" 
-494      elif terms[-1] == "dat": 
-495          rstr = "DAT" 
-496      elif terms[-1] == "gss": 
-497          rstr = "DAT"  
-498      elif terms[-1] == "gsa": 
-499          rstr = "GSA" 
-500      else: 
-501          errmsg = "Unrecognizable Data Format:  %-20s Of Data File %-20s " % \ 
-502                  (terms[-1], datafilename) 
-503          raise NotImplementedError(errmsg) 
-504      # END-IF-ELSE 
-505       
-506      return rstr 
-
        507   
-508   
-
        509 -def convertChiToGSAS(datafilename, targetfullname = None): 
-
        510      """ 
-511      Convert CHI file to specific data format related to refinement engine 
-512   
-513      Argument: 
-514      - datafilename 
-515   
-516      Return  :   str, new file name 
-517      """ 
-518      from mar_utilities import ChiFile 
-519   
-520      cf = ChiFile(datafilename) 
-521      if not cf.mar_file: 
-522          cf.mar_file = datafilename 
-523      if targetfullname == None: 
-524          targetfullname = datafilename.split(".")[0] + ".gsa" 
-525   
-526      if not os.path.isfile(targetfullname): 
-527          cf.writeGSAS(targetfullname) 
-528      else: 
-529          pass 
-530   
-531      return targetfullname 
-
        532   
-533   
-
        534 -def convertChiToXYSigma(origfullname, targetfullname = None,  
-535          filenameroot = None, newdir = ""): 
-
        536      """ 
-537      Convert the 2 column chi file to 3-column XYSigma File  
-538      Complied to Fullprof format 
-539   
-540      Argument: 
-541      - origfullname  :   str, full name with path 
-542      - targetfullname:   str, full name with path 
-543      - filenameroot  :   str 
-544      - newdir        :   str 
-545   
-546      Return          :   str, new file name 
-547      """ 
-548      import math 
-549   
-550      # 1. Read File 
-551      try: 
-552          ofile = open(origfullname, "r") 
-553          lines = ofile.readlines() 
-554          ofile.close() 
-555      except IOError, err: 
-556          print "Fatal Error:  Cannot Open File %-20s"% (origfullname) 
-557          raise IOError, err 
-558   
-559      # 2. Get new file name 
-560      if targetfullname is not None: 
-561          newfullname = targetfullname 
-562      elif filenameroot is not None: 
-563          if newdir != "" and newdir[-1] != "/": 
-564              newdir = newdir + "/" 
-565          newfullname = newdir + filenameroot + ".dat" 
-566      else: 
-567          newfullname = origfullname.split(".")[0]+".dat" 
-568   
-569      # 3. Convert file if the target file does not exist 
-570      if not os.path.isfile(newfullname): 
-571   
-572          datalist = [] 
-573          infolist = [] 
-574          # 3.1 Line separation 
-575          for line in lines: 
-576              cline = line.strip() 
-577              if cline != "": 
-578                  terms  = cline.split() 
-579                  isinfo = False 
-580                  # a. interpret line 
-581                  if len(terms) == 2: 
-582                      try: 
-583                          x = float(terms[0]) 
-584                          y = float(terms[1]) 
-585                          s = math.sqrt(y) 
-586                      except ValueError, err: 
-587                          isinfo = True 
-588                  else: 
-589                      isinfo = True 
-590                   
-591                  # b. process 
-592                  if isinfo is True: 
-593                      infolist.append(cline) 
-594                  else: 
-595                      datalist.append( (x, y, s) ) 
-596              else: 
-597                  # Empty line 
-598                  pass 
-599              # END-IF cline != "" 
-600          # LOOP-OVER: line in lines 
-601   
-602          # 3.2 Output 
-603          ostring = "" 
-604          # (a) Information Line 
-605          maxinfoindex = len(infolist)-1 
-606          for i in xrange(6): 
-607              if i <= maxinfoindex: 
-608                  line = "# %-30s\n"% (infolist[i]) 
-609              else: 
-610                  line = "# \n" 
-611              ostring += line 
-612   
-613          # (b) Data line 
-614          for tup in datalist: 
-615              x, y, s = tup 
-616              line = "%-15s   %-15s   %-15s\n"% (x, y, s) 
-617              ostring += line 
-618   
-619          # (c) write out 
-620          ofile = open(newfullname, "w") 
-621          ofile.write(ostring) 
-622          ofile.close() 
-623   
-624      else: 
-625          msg = "Target file %-20s Exists.  No need to convert!" % (newfullname) 
-626          print msg 
-627      # END-IF 
-628   
-629      return newfullname 
-
        630   
-631   
-
        632 -def convertXYSigmaToChi(datafilename): 
-
        633      """ 
-634      Convert the 3-column XYSigma file to 2-column Chi File  
-635      Transfer FullProf format to GSAS format 
-636   
-637      Argument: 
-638      - datafilename 
-639   
-640      Return          :   str, chi file name 
-641      """ 
-642      # 1. Read File 
-643      try: 
-644          ofile = open(datafilename, "r") 
-645          lines = ofile.readlines() 
-646          ofile.close() 
-647      except IOError, err: 
-648          print "Fatal Error:  Cannot Open File %-20s"% (datafilename) 
-649          raise IOError, err 
-650   
-651      datalist = [] 
-652      infolist = [] 
-653       
-654      # 2. New file name 
-655      chifilename = datafilename.split(".")[0]+".chi" 
-656   
-657      # 3.  
-658   
-659      # 2. Line separation 
-660      for line in lines: 
-661          cline = line.strip() 
-662          if cline != "": 
-663              terms  = cline.split() 
-664              isinfo = False 
-665              # a. interpret line 
-666              if len(terms) == 3: 
-667                  try: 
-668                      x = float(terms[0]) 
-669                      y = float(terms[1]) 
-670                  except ValueError, err: 
-671                      isinfo = True 
-672              else: 
-673                  isinfo = True 
-674               
-675              # b. process 
-676              if isinfo is True: 
-677                  infolist.append(cline) 
-678              else: 
-679                  datalist.append( (x, y) ) 
-680          else: 
-681              # Empty line 
-682              pass 
-683          # END-IF cline != "" 
-684      # LOOP-OVER: line in lines 
-685   
-686      # 3. Output 
-687      ostring = "" 
-688       
-689      # 3.1 Information Line 
-690      maxinfoindex = len(infolist)-1 
-691      for i in xrange(12): 
-692          if i <= maxinfoindex: 
-693              line = "# %-30s\n"% (infolist[i]) 
-694          else: 
-695              line = "# \n" 
-696          ostring += line 
-697   
-698      for tup in datalist: 
-699          x, y= tup 
-700          line = "%-15s   %-15s   \n"% (x, y) 
-701          ostring += line 
-702       
-703      ofile = open(chifilename, "w") 
-704      ofile.write(ostring) 
-705      ofile.close() 
-706   
-707      return chifilename 
-
        708   
-
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        Class DataFileParser

        source code

        -
        Known Subclasses:
        -
        - FullProfFreeFormatParser, - GEMDataParser, - XYSigmaFileParser -
        - -
        -
        -Virtual base class of Parer of data file
-
-Instantiation: 
-  DataFileParser(datafilename)
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - datafilename=None)
        - Initialization of DataFileParser...        		 - source code - -
        - -
        -   - - - - - - -
        setInputFileName(self, - datafilename)
        - Set the input data file name to parse...        		 - source code - -
        - -
        -   - - - - - - -
        parseDataFile(self)
        - Parse the data file        		 - source code - -
        - -
        -   - - - - - - -
        _parse(self)
        - Virtual method to parse the data from a list of lines        		 - source code - -
        - -
        -   - - - - - - -
        importData(self, - xs, - ys, - ss)
        - Import the array (x, y, sigma) to self - -Argument: - xs : dict.        		 - source code - -
        - -
        -   - - - - - - -
        exportData(self)
        - Export the data        		 - source code - -
        - -
        -   - - - - - - -
        writeToFile(self, - filename)
        - Write the data to a file in the specific format...        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - datafilename=None) -
        (Constructor) -

        -         		source code  -
        - - 
        -Initialization of DataFileParser
-
-Argument:
-  datafilename  :   str, data file name
-
-Return          :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        setInputFileName(self, - datafilename) -

        -         		source code  -
        - - 
        -Set the input data file name to parse
-and parse it!
-
-Argument:
-  datafilename  :   str
-
-Return          :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        parseDataFile(self) -

        -         		source code  -
        - -

        Parse the data file

        -

        General base class method

        - Return : None -
        -
        -
        -
        - -
        - -
        - - -
        -

        _parse(self) -

        -         		source code  -
        - -

        Virtual method to parse the data from a list of lines

        - Return : None -
        -
        -
        -
        - -
        - -
        - - -
        -

        importData(self, - xs, - ys, - ss) -

        -         		source code  -
        - - 
        -Import the array (x, y, sigma) to self
-
-Argument:
-  xs    :   dict.  key = int, (bank)  value = array
-  ys    :   dict.  key = int, (bank)  value = array
-  ss    :   dict.  key = int, (bank)  value = array
-
-Return  :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        exportData(self) -

        -         		source code  -
        - -

        Export the data

        - Return : list of 3-tuples as (x, y, sigma) -
        -
        -
        -
        - -
        - -
        - - -
        -

        writeToFile(self, - filename) -

        -         		source code  -
        - - 
        -Write the data to a file in the specific format
-
-Argument:
-  filename  :   str
-
-Return      :   None
-
-
        -
        -
        -
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        Class FullProfFreeFormatParser

        source code

        -
        -DataFileParser --+
-                 |
-                FullProfFreeFormatParser
-
        - -
        -Data file parser for Fullprof free format data file

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - datafilename=None)
        - Initialization of FullProfFreeFormatParser        		 - source code - -
        - -
        -   - - - - - - -
        _parse(self)
        - Parse the data from a list of lines and store the result to _xs, - _ys, _ss Override parents method        		 - source code - -
        - -
            Inherited from DataFileParser
        -   - - - - - - -
        exportData(self)
        - Export the data        		 - source code - -
        - -
        -   - - - - - - -
        importData(self, - xs, - ys, - ss)
        - Import the array (x, y, sigma) to self - -Argument: - xs : dict.        		 - source code - -
        - -
        -   - - - - - - -
        parseDataFile(self)
        - Parse the data file        		 - source code - -
        - -
        -   - - - - - - -
        setInputFileName(self, - datafilename)
        - Set the input data file name to parse...        		 - source code - -
        - -
        -   - - - - - - -
        writeToFile(self, - filename)
        - Write the data to a file in the specific format...        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - datafilename=None) -
        (Constructor) -

        -         		source code  -
        - - Initialization of FullProfFreeFormatParser -
        -
        Overrides: - DataFileParser.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        _parse(self) -

        -         		source code  -
        - -

        Parse the data from a list of lines and store the result to _xs, _ys, - _ss Override parents method

        - Return : None -
        -
        Overrides: - DataFileParser._parse -
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        - -

        Class GEMDataParser

        source code

        -
        -DataFileParser --+
-                 |
-                GEMDataParser
-
        - -
        -
        -Data file parser for GEM data
-
-RaPDF data format is defined as
-X-Y-Sigma
-
-Class Variable:
-  *  _xs 
-  *  _ys 
-  *  _ss 
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - datafilename=None)
        - Initialization of GEMDataParser...        		 - source code - -
        - -
        -   - - - - - - -
        _parse(self)
        - Method to parse the GEM data from a list of lines        		 - source code - -
        - -
            Inherited from DataFileParser
        -   - - - - - - -
        exportData(self)
        - Export the data        		 - source code - -
        - -
        -   - - - - - - -
        importData(self, - xs, - ys, - ss)
        - Import the array (x, y, sigma) to self - -Argument: - xs : dict.        		 - source code - -
        - -
        -   - - - - - - -
        parseDataFile(self)
        - Parse the data file        		 - source code - -
        - -
        -   - - - - - - -
        setInputFileName(self, - datafilename)
        - Set the input data file name to parse...        		 - source code - -
        - -
        -   - - - - - - -
        writeToFile(self, - filename)
        - Write the data to a file in the specific format...        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - datafilename=None) -
        (Constructor) -

        -         		source code  -
        - - 
        -Initialization of GEMDataParser
-
-Argument:
-  datafilename  :   str, data file name
-
-Return          :   None
-
-
        -
        -
        Overrides: - DataFileParser.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        _parse(self) -

        -         		source code  -
        - -

        Method to parse the GEM data from a list of lines

        - Return : None -
        -
        Overrides: - DataFileParser._parse -
        -
        -
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        - - Package srrietveld :: - Module datafileconverter :: - Class NPDFDataParser - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class NPDFDataParser

        source code

        -
        -DataFileParser --+    
-                 |    
- XYSigmaFileParser --+
-                     |
-                    NPDFDataParser
-
        - -
        -
        -
-Data file parser for RaPDF data
-
-RaPDF data format is defined as
-X-Y-Sigma
-
-Class Variable:
--  _xs 
--  _ys 
--  _ss 
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - datafilename=None)
        - Initialization...        		 - source code - -
        - -
            Inherited from XYSigmaFileParser
        -   - - - - - - -
        _parse(self)
        - Virtual method to parse the data from a list of lines        		 - source code - -
        - -
        -   - - - - - - -
        writeToFile(self, - filename, - comments=None)
        - Write the data to a file in the specific format...        		 - source code - -
        - -
            Inherited from DataFileParser
        -   - - - - - - -
        exportData(self)
        - Export the data        		 - source code - -
        - -
        -   - - - - - - -
        importData(self, - xs, - ys, - ss)
        - Import the array (x, y, sigma) to self - -Argument: - xs : dict.        		 - source code - -
        - -
        -   - - - - - - -
        parseDataFile(self)
        - Parse the data file        		 - source code - -
        - -
        -   - - - - - - -
        setInputFileName(self, - datafilename)
        - Set the input data file name to parse...        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - datafilename=None) -
        (Constructor) -

        -         		source code  -
        - - 
        -Initialization
-
-Argument:
-  datafilename  :   str, data file name
-
-Return          :   None
-
-
        -
        -
        Overrides: - XYSigmaFileParser.__init__ -
        -
        -
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        - - Package srrietveld :: - Module datafileconverter :: - Class RAPDFDataParser - - - - - - -
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        [frames] | no frames]
        -
        - -

        Class RAPDFDataParser

        source code

        -
        -DataFileParser --+    
-                 |    
- XYSigmaFileParser --+
-                     |
-                    RAPDFDataParser
-
        - -
        -
        -
-Data file parser for RaPDF data
-
-RaPDF data format is defined as
-X-Y-Sigma
-
-Class Variable:
--  _xs 
--  _ys 
--  _ss 
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - datafilename=None)
        - Initialization...        		 - source code - -
        - -
            Inherited from XYSigmaFileParser
        -   - - - - - - -
        _parse(self)
        - Virtual method to parse the data from a list of lines        		 - source code - -
        - -
        -   - - - - - - -
        writeToFile(self, - filename, - comments=None)
        - Write the data to a file in the specific format...        		 - source code - -
        - -
            Inherited from DataFileParser
        -   - - - - - - -
        exportData(self)
        - Export the data        		 - source code - -
        - -
        -   - - - - - - -
        importData(self, - xs, - ys, - ss)
        - Import the array (x, y, sigma) to self - -Argument: - xs : dict.        		 - source code - -
        - -
        -   - - - - - - -
        parseDataFile(self)
        - Parse the data file        		 - source code - -
        - -
        -   - - - - - - -
        setInputFileName(self, - datafilename)
        - Set the input data file name to parse...        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - datafilename=None) -
        (Constructor) -

        -         		source code  -
        - - 
        -
-Initialization
-
-Argument:
-- datafilename  :   str, data file name
-
-Return          :   None
-
-
        -
        -
        Overrides: - XYSigmaFileParser.__init__ -
        -
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        -
        - -

        Class XYSigmaFileParser

        source code

        -
        -DataFileParser --+
-                 |
-                XYSigmaFileParser
-
        - -
        Known Subclasses:
        -
        - NPDFDataParser, - RAPDFDataParser -
        - -
        -Data file parser for X-Y-Sigma format

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - datafilename=None)
        - Initialization of XYSigmaFileParser...        		 - source code - -
        - -
        -   - - - - - - -
        _parse(self)
        - Virtual method to parse the data from a list of lines        		 - source code - -
        - -
        -   - - - - - - -
        writeToFile(self, - filename, - comments=None)
        - Write the data to a file in the specific format...        		 - source code - -
        - -
            Inherited from DataFileParser
        -   - - - - - - -
        exportData(self)
        - Export the data        		 - source code - -
        - -
        -   - - - - - - -
        importData(self, - xs, - ys, - ss)
        - Import the array (x, y, sigma) to self - -Argument: - xs : dict.        		 - source code - -
        - -
        -   - - - - - - -
        parseDataFile(self)
        - Parse the data file        		 - source code - -
        - -
        -   - - - - - - -
        setInputFileName(self, - datafilename)
        - Set the input data file name to parse...        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - datafilename=None) -
        (Constructor) -

        -         		source code  -
        - - 
        -Initialization of XYSigmaFileParser
-
-Argument:
-- datafilename  :   str, data file name
-
-Return          :   None
-
-
        -
        -
        Overrides: - DataFileParser.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        _parse(self) -

        -         		source code  -
        - -

        Virtual method to parse the data from a list of lines

        - Return : None -
        -
        Overrides: - DataFileParser._parse -
        -
        -
        -
        - -
        - -
        - - -
        -

        writeToFile(self, - filename, - comments=None) -

        -         		source code  -
        - - 
        -Write the data to a file in the specific format
-
-Argument:
-- filename  :   str
-- comments  :   list, of string for put comments to data file
-
-Return      :   None
-
-
        -
        -
        Overrides: - DataFileParser.writeToFile -
        -
        -
        -
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        - - Package srrietveld :: - Module datamanager - - - - - - -
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        - -

        Module datamanager

        source code

        -
        -Management of data file and related refinement 
-
-Created On  2008.09.23
-
-Class DataManager Functions List:
-  * Constructor
-     __init__(self, projfname, workdir, tempfit)
-
-  * Information Retrieval
-    refine_all(self)
-
-  * Internal usage
-    getDataFilesList(self)
-    readXMLProjectFile(self)
-    syncData(self)
-
-


        - - - - - - - - - - -
        - - - - - -
        Classes[hide private]
        -
        -   - - DataManager
        - Data-Manager -
        - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Functions[hide private]
        -
        -   - - - - - - -
        duplicateModel(thefit)
        - Assume that there is only one structure model in a Fit - -duplicate the model (including one or a few phases) - -Argument: -- thefit : Fit instance - -Return : list of 2-tuples - 1.        		 - source code - -
        - -
        -   - - - - - - -
        searchClosestValue(dataset, - invalue, - begin, - end)
        - Search the closest value in a sorted data set to an input value...        		 - source code - -
        - -
        -   - - - - - - -
        isGoodFit(refinedetail)
        - Judge whether a Fit is good enough from the Refine Detail...        		 - source code - -
        - -
        -   - - - - - - -
        loadFit(prjfname)
        - Load the fit from a multiple step project file, i.e., the current Fit...        		 - source code - -
        - -
        - - - - - - - - - - - - -
        - - - - - -
        Variables[hide private]
        -
        -   - - __id__ = '$Id: datamanager.py 2792 2009-03-02 15:56:43Z wdzhou $' -
        -   - - MAXRP = 50.0 -
        - - - - - - -
        - - - - - -
        Function Details[hide private]
        -
        - -
        - -
        - - -
        -

        duplicateModel(thefit) -

        -         		source code  -
        - - 
        -
-Assume that there is only one structure model in a Fit 
-
-duplicate the model (including one or a few phases)
-
-Argument:
-- thefit    :   Fit instance
-
-Return      :   list of 2-tuples
-                1. Lattice instance
-                2. List of Atom instances
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        searchClosestValue(dataset, - invalue, - begin, - end) -

        -         		source code  -
        - - 
        -
-Search the closest value in a sorted data set to an input value
-
-Argument:
-- dataset   :   list, array
-- invalue   :   input value
-- begin     :   int, begining index
-- end       :   int, ending index
-
-Return      :   object in data set
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        isGoodFit(refinedetail) -

        -         		source code  -
        - - 
        -
-Judge whether a Fit is good enough from the Refine Detail
-
-Argument:
-- refinedetail  :   RefineDetail instance
-
-Return          :   Boolean 
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        loadFit(prjfname) -

        -         		source code  -
        - - 
        -
-Load the fit from a multiple step project file, i.e., the current Fit
-
-Argument:
-- prjfname  :   str, project file name
-
-Return      :   Fit object
-
-
        -
        -
        -
        -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.datamanager-pysrc.html b/static_root/doc/srrietveld/developers/srrietveld.datamanager-pysrc.html deleted file mode 100644 index 7b01bf94..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.datamanager-pysrc.html +++ /dev/null @@ -1,704 +0,0 @@ - - - - - srrietveld.datamanager - - - - - - - - - - - - - - - - - - - - - - -
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        Source Code for Module srrietveld.datamanager

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2008 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Wenduo Zhou 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14  """ Management of data file and related refinement  
- 15   
- 16    Created On  2008.09.23 
- 17   
- 18    Class DataManager Functions List: 
- 19      * Constructor 
- 20         __init__(self, projfname, workdir, tempfit) 
- 21   
- 22      * Information Retrieval 
- 23        refine_all(self) 
- 24   
- 25      * Internal usage 
- 26        getDataFilesList(self) 
- 27        readXMLProjectFile(self) 
- 28        syncData(self) 
- 29  """ 
- 30  __id__ = "$Id: datamanager.py 2792 2009-03-02 15:56:43Z wdzhou $" 
- 31   
- 32  MAXRP = 50.00 
- 33   
-
         34 -class DataManager(object): 
-
         35      """ 
- 36      Data-Manager 
- 37   
- 38      """ 
-
         39 -    def __init__(self, projfname, workdir, tempfit): 
-
         40          """ 
- 41          initialization 
- 42   
- 43          Argument: 
- 44          - projfname : 
- 45          - workdir   : 
- 46          - tempfit   : 
- 47          """ 
- 48          # 1. input 
- 49          self._projectfilename = projfname 
- 50          self._workingdir      = workdir 
- 51          self._templatefit     = tempfit 
- 52   
- 53          # 2. init data structure 
- 54          self._lebailRp        = {} 
- 55          self._rietveldRp      = {} 
- 56          self._projectFileName = {} 
- 57          self._refinedFit      = {}  # key = lattice.a, value = file name/fit instance 
- 58   
- 59          # 3. phase model 
- 60          self._origmodel = duplicateModel(tempfit) 
- 61          self._lowerboundmodel = None 
- 62          self._upperboundmodel = None 
- 63   
- 64          # 4. synchronization 
- 65          self.syncData() 
- 66   
- 67          return 
-
         68   
- 69   
-
         70 -    def syncData(self): 
-
         71          """ 
- 72          Synchronize data sets in the working directory with the given project 
- 73   
- 74          Return  :   None 
- 75          """ 
- 76          # 1. Input data file 
- 77          self.readXMLProjectFile() 
- 78   
- 79          # 2. List the current data file 
- 80          datafilelist = self.getDataFilesList() 
- 81   
- 82          # 3. Synchronize 
- 83          for datafilename in datafilelist: 
- 84              if not self._rietveldRp.has_key(datafilename): 
- 85                  self._lebailRp[datafilename]   = None 
- 86                  self._rietveldRp[datafilename] = None 
- 87   
- 88          return 
-
         89   
- 90   
-
         91 -    def readXMLProjectFile(self): 
-
         92          """ 
- 93          Read input project file in XML format 
- 94   
- 95          Return  :   None 
- 96          """ 
- 97          import xmlinterface as XMLIN 
- 98          import refinemanager as RM 
- 99   
-100          maxlat_a = None 
-101          minlat_a = None 
-102   
-103          # 1. Parse Information From XML File 
-104          try: 
-105              # 1.1 Import XML file 
-106              fullfilename = self._projectfilename 
-107              myxml = XMLIN.importXML(fullfilename) 
-108   
-109              # 1.2 Import for  
-110              refnode = None 
-111              for childnode in myxml.childNodes: 
-112                  if childnode.localName == "REFINEALL": 
-113                      refnode = childnode 
-114                      break 
-115              # LOOP-OVER: for childnode in myxml.childNodes 
-116   
-117              if refnode is None: 
-118                  errmsg = "XML File is Not Correct" 
-119                  raise NotImplementedError(errmsg) 
-120   
-121              for childnode in refnode.childNodes: 
-122   
-123                  if childnode.localName == "DATASET": 
-124                      # 2.1 Parse 
-125                      filename = str(XMLIN.getAttributeValue(childnode, "Name")) 
-126                      lebailrp = str(XMLIN.getAttributeValue(childnode, "Lebail-Rp")) 
-127                      rietvlrp = str(XMLIN.getAttributeValue(childnode, "Rietveld-Rp")) 
-128                      # 2.2 Read 
-129                      try: 
-130                          if lebailrp.lower() != "nan": 
-131                              lebailrp = float(lebailrp) 
-132                      except ValueError, err: 
-133                          pass 
-134                      try: 
-135                          if rietvlrp.lower() != "nan": 
-136                              rietvlrp = float(rietvlrp) 
-137                      except ValueError, err: 
-138                          pass 
-139                      # 2.3 Store 
-140                      self._lebailRp[filename]   = lebailrp 
-141                      self._rietveldRp[filename] = rietvlrp 
-142   
-143                  elif childnode.localName == "MODELINFO": 
-144                      # Parse 
-145                      lattice_a = float(XMLIN.getAttributeValue(childnode, "Lattice-a")) 
-146                      projname  = str(XMLIN.getAttributeValue(childnode, "Project-Name")) 
-147                      # Store 
-148                      self._refinedFit[lattice_a] = projname 
-149    
-150              # LOOP-OVER:  for childnode in myxml.childNodes 
-151          except IOError, err: 
-152              msg = "Application File %-10s Does Not Exist; This is a new set of data"% \ 
-153                  (fullfilename) 
-154              print msg 
-155   
-156          return 
-
        157   
-158   
-
        159 -    def getDataFilesList(self): 
-
        160          """ 
-161          Get the list of data file names (no path) 
-162   
-163          Return  :   list of str, file names 
-164          """ 
-165          raise NotImplementedError("Unit Test Required!") 
-166          import os 
-167   
-168          # 1. List directory 
-169          try: 
-170              rawfilenameslist = os.listdir(self._workingdir) 
-171          except OSError, err: 
-172              errmsg = "Directory %-20s Is Not Found"% (self._workingdir)  
-173              raise FitConfigurationError(errmsg) 
-174          raise NotImplementedError("Use good os.listfile() to replace") 
-175   
-176          # 2. Find file names, no path, including ".dat" as a data file 
-177          datafilenameslist = [] 
-178          for filename in rawfilenameslist: 
-179              filename = line.split("\n")[0].split("/")[-1] 
-180              if filename.lower().count(".dat") == 1: 
-181                  datafilenameslist.append(filename) 
-182               
-183          return datafilefilenameslist 
-
        184   
-185   
-
        186 -    def refine_all(self): 
-
        187          """ 
-188          Refine all the data file that  
-189   
-190          Return  :   None 
-191          """ 
-192          import midscript as MS 
-193          import copy 
-194          import refinemanager as RM 
-195          import refinestrategy as RS 
-196   
-197          # 1. Initialization 
-198          Stop = False 
-199          neverrefined = [] 
-200          toberefined  = {} 
-201   
-202          # 2. FIXME  Continue on an interrupted break point 
-203          self.continueUponBreak() 
-204   
-205          # 3. Select the unrefined file according to Rietveld-Rp 
-206          for filename in self._rietveldRp.keys(): 
-207              rp = self._rietveldRp[filename] 
-208              if 0:   # 1440 
-209                  print "1440:  File Name = %-20s  Rp = %-20s  with type %-20s"% (filename, rp, type(rp)) 
-210              if rp == "nan" or rp is None or rp > MAXRP: 
-211                  neverrefined.append(filename) 
-212           
-213          if 0:   # debug 1216     
-214              print "1216  List of Data File: (Debug exit)" 
-215              for fn in neverrefined: 
-216                  print fn 
-217              exit(0)        
-218   
-219          # 4. Loop and solve the problem 
-220          while not Stop: 
-221   
-222              # 4.1 Le-Bail select for refinable-data set 
-223              for filename in neverrefined[:]: 
-224                  fitresults = [] 
-225                  # 4.1.1 Fit for 3 models in Le-Bail 
-226                  for model in [self._origmodel, self._lowerboundmodel, self._upperboundmodel]: 
-227                      if model is not None: 
-228                          dryfit = copy.deepcopy(self._templatefit) 
-229                          if self._workingdir == "": 
-230                              ffanme = filename 
-231                          else: 
-232                              ffname = self._workingdir+"/"+filename 
-233                          MS.reloadData(dryfit, ffname) 
-234                          MS.replaceStructureModel(dryfit, model) 
-235                          refinedetail_dry = dryfit.refine(srtype="lebail") 
-236                          if 1:   # 1600 
-237                              print "1600...Dry Lebail.  Rp = %-15s"% (refinedetail_dry.getResidueValue(cycle=-1, residname="rp")) 
-238                          fitresults.append( (dryfit, refinedetail_dry) ) 
-239                      else: 
-240                          fitresults.append(None) 
-241   
-242                  # 4.1.2 Select the best fit 
-243                  leastrpval = "NAN" 
-244                  leastrpidx = -1 
-245                  findex     = 0 
-246                  for tup in fitresults: 
-247                      if tup is not None: 
-248                          dryfit, refinedetail_dry = tup 
-249                          rp = refinedetail_dry.getResidueValue(cycle=-1, residname="rp") 
-250                          if rp != "NAN": 
-251                              if leastrpval=="NAN" or rp < leastrpval: 
-252                                  leastrpval = rp 
-253                                  leastrpidx = findex 
-254                          # END-IF rp != "NAN" 
-255                      findex += 1 
-256                  # LOOP-OVER 
-257   
-258                  if 1:   # 1558 
-259                      print "1558:  Data File = %-15s Least Rp = %-15s @ %-5s"% \ 
-260                          (filename, leastrpval, leastrpidx) 
-261   
-262                  # 4.1.3 judge whether to add:  index=0, 1, 2 for orig, low, upper 
-263                  if leastrpval != "NAN" and leastrpval < MAXRP: 
-264                      dryfit, refinedetail_dry = fitresults[leastrpidx] 
-265                      toberefined[leastrpval] = (filename, leastrpidx) 
-266                      self._lebailRp[filename] = refinedetail_dry.getResidueValue(cycle=-1, residname="rp") 
-267                      neverrefined.remove(filename) 
-268                   
-269              # LOOP-OVER: for filename in neverrefined 
-270   
-271              # 4.2 Flag whether the loop should be quit 
-272              if len(toberefined) == 0: 
-273                  Stop = True 
-274                  refineorderlist = [] 
-275              else: 
-276                  numbefore = len(toberefined) 
-277                  refineorderlist = sorted(toberefined.keys())  
-278   
-279              if 1:   # 1111 
-280                  print "--------------------    1111    --------------------" 
-281                  print "To Fit Data:" 
-282                  for name in toberefined: 
-283                      print name 
-284                  print "Cannot Refine:" 
-285                  for name in neverrefined: 
-286                      print name 
-287                  print "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~" 
-288              # END-DEBUG 
-289               
-290              # 4.3  Structure refine 
-291              for rp in refineorderlist: 
-292                  # 4.3.1 Get Data File 
-293                  datafname, findex = toberefined[rp] 
-294                  if 1:   # 1114 
-295                      print "1114:  Name = %-10s"% (datafname) 
-296   
-297                  # 4.3.2 Construct (model and data), Multi-step Lebail, Save 
-298                  lebfit = copy.deepcopy(self._templatefit) 
-299   
-300                  if findex == 0: 
-301                      startmodel = copy.deepcopy(self._origmodel) 
-302                  elif findex == 1: 
-303                      startmodel = copy.deepcopy(self._lowerboundmodel) 
-304                  else: 
-305                      startmodel = copy.deepcopy(self._upperboundmodel) 
-306                  MS.replaceStructureModel(lebfit, startmodel) 
-307   
-308                  if self._workingdir == "": 
-309                      ffname = datafname 
-310                  else: 
-311                      ffname=self._workingdir+"/"+datafname 
-312                  MS.reloadData(lebfit, ffname) 
-313   
-314                  msrefmanager = RM.MultiStepRefineManager(lebfit) 
-315                  thestrategy  = RS.CalibratedLebailRefineStrategy() 
-316                  refinedetail_leb, processid = msrefmanager.refine(thestrategy) 
-317   
-318                  if self._workingdir == "": 
-319                      projectfname = datafname.split(".")[0]+"_lebail.proj" 
-320                  else: 
-321                      projectfname = self._workingdir+"/"+datafname.split(".")[0]+"_lebail.proj" 
-322                  msrefmanager.save(projectfname) 
-323   
-324                  # 4.3.3 Select the nearest lattice model, replace the data, do Rietveld 
-325                  lat_a = lebfit.getComponent(0).getPhase(0).getLattice().geta() 
-326                  numrefinedfit = len(self._refinedFit) 
-327                  if numrefinedfit > 0: 
-328                      # a.  using the closest 
-329                      # a.1 find the closest Fit 
-330                      ref_a = searchClosestValue(sorted(self._refinedFit.keys()), lat_a, 0, numrefinedfit-1) 
-331                      if self._workingdir == "": 
-332                          fullprojname = self._refinedFit[ref_a]    
-333                      else: 
-334                          fullprojname = self._workingdir+"/"+self._refinedFit[ref_a] 
-335                      rietfit = copy.deepcopy(loadFit(fullprojname)) 
-336                      # a.2 reload the data 
-337                      MS.reloadData(rietfit, ffname) 
-338                  else: 
-339                      # b. start case. use the original fit 
-340                      rietfit = lebfit 
-341   
-342                  if 0:   # 1121 
-343                      print "1121:" 
-344                      print rietfit._srfit 
-345                      print "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~" 
-346   
-347                  msrefmanager = RM.MultiStepRefineManager(rietfit) 
-348                  thestrategy  = RS.CalibratedRietveldRefineStrategy() 
-349                  refinedetail_rie, processid = msrefmanager.refine(thestrategy) 
-350   
-351                  # 4.2.3 record 
-352                  if isGoodFit(refinedetail_rie) is True: 
-353                      lat_a = rietfit.getComponent(0).getPhase(0).getLattice().geta() 
-354                      saveprojfilename            = ffname.split(".")[0]+".proj" 
-355                      msrefmanager.save(saveprojfilename) 
-356   
-357                      self._rietveldRp[datafname]      = refinedetail_rie.getResidueValue(cycle=-1, residname="rp") 
-358                      self._projectFileName[datafname] = saveprojfilename.split("/")[-1] 
-359                      self._refinedFit[lat_a]          = self._projectFileName[datafname] 
-360   
-361                      del toberefined[rp] 
-362                  else: 
-363                      self._rietveldRp[datafname] = "NAN" 
-364   
-365              # LOOP-OVER:  for rp in refineorderlist 
-366   
-367              # 4.4 Check again: If no good refinement added in, stop! 
-368              if Stop is False: 
-369                  numafter = len(toberefined) 
-370                  if numbefore == numafter:    
-371                      Stop = True 
-372   
-373          # END-WHILE 
-374   
-375          return 
-
        376          
-377   
-
        378 -    def save(self): 
-
        379          """ 
-380          Save the refinement to the project XML file. 
-381   
-382          Return  :   None 
-383          """ 
-384          import xml.dom.minidom 
-385          import time 
-386   
-387          currtime = time.time() 
-388   
-389          myxml = xml.dom.minidom.Document() 
-390          # 1. root node 
-391          infonode = myxml.createElement("REFINEALL") 
-392          infonode.setAttribute("Name", str(currtime)) 
-393          myxml.appendChild(infonode) 
-394   
-395          # 2. data file node 
-396          for datafname in self._rietveldRp.keys(): 
-397              lebailrp = self._lebailRp[datafname] 
-398              rietvdrp = self._rietveldRp[datafname] 
-399              filenode = myxml.createElement("DATASET") 
-400              filenode.setAttribute("Name"          ,   datafname) 
-401              filenode.setAttribute("Lebail-Rp"     ,   str(lebailrp))  
-402              filenode.setAttribute("Rietveld-Rp"   ,   str(rietvdrp)) 
-403              infonode.appendChild(filenode) 
-404   
-405          # 3. lattice node 
-406          for lata in self._refinedFit.keys(): 
-407              projfname = self._refinedFit[lata] 
-408              projnode = myxml.createElement("MODELINFO") 
-409              projnode.setAttribute("Lattice-a"     ,   str(lata)) 
-410              projnode.setAttribute("Project-Name"  ,   projfname) 
-411              infonode.appendChild(projnode) 
-412   
-413          # 4. save 
-414          ofile = open(self._projectfilename, "w") 
-415          xml.dom.ext.PrettyPrint(myxml, ofile) 
-416          ofile.close() 
-417   
-418          return 
-
        419   
-420   
-
        421 -    def continueUponBreak(self): 
-
        422          """ 
-423          Continue the unfinished refinement from an interruption 
-424   
-425          Return  :   None 
-426          """ 
-427          # FIXME will be developed later 
-428          wmsg = "Warning: Develop DataManager.continueUponBreak() Soon" 
-429          print wmsg 
-430   
-431          return 
-
        432   
-433   
-
        434 -def duplicateModel(thefit): 
-
        435      """ 
-436      Assume that there is only one structure model in a Fit  
-437   
-438      duplicate the model (including one or a few phases) 
-439   
-440      Argument: 
-441      - thefit    :   Fit instance 
-442   
-443      Return      :   list of 2-tuples 
-444                      1. Lattice instance 
-445                      2. List of Atom instances 
-446      """ 
-447      model     = [] 
-448      numphases = thefit.getComponent(0).getNumPhases() 
-449   
-450      for pidx in xrange(numphases): 
-451          phase    = thefit.getComponent(0).getPhase(pidx)  
-452          spacegroup = phase.getSpaceGroup() 
-453          lattice  = phase.getLattice().duplicate() 
-454          numatoms = phase.getNumAtoms() 
-455          atomslist = [] 
-456          for aindex in xrange(numatoms): 
-457              atom = phase.getAtom(aindex).duplicate() 
-458              atomslist.append(atom) 
-459          copyphase = (lattice, atomslist, spacegroup) 
-460          model.append(copyphase) 
-461   
-462      return model 
-
        463                   
-464   
-
        465 -def searchClosestValue(dataset, invalue, begin, end): 
-
        466      """ 
-467      Search the closest value in a sorted data set to an input value 
-468   
-469      Argument: 
-470      - dataset   :   list, array 
-471      - invalue   :   input value 
-472      - begin     :   int, begining index 
-473      - end       :   int, ending index 
-474       
-475      Return      :   object in data set 
-476      """ 
-477      # using binary search 
-478      if invalue < dataset[begin]: 
-479          return dataset[begin] 
-480      elif invalue > dataset[end]: 
-481          return dataset[end] 
-482      elif end-begin==1: 
-483          if invalue-dataset[begin] < dataset[end]-invalue: 
-484              return dataset[begin] 
-485          else: 
-486              return dataset[end] 
-487      else: 
-488          mid = (begin+end)/2 
-489          if invalue < dataset[mid]: 
-490              return searchClosestValue(dataset, invalue, begin, mid) 
-491          else: 
-492              return searchClosestValue(dataset, invalue, mid, end) 
-493       
-494      return 
-
        495       
-496   
-
        497 -def isGoodFit(refinedetail): 
-
        498      """ 
-499      Judge whether a Fit is good enough from the Refine Detail 
-500   
-501      Argument: 
-502      - refinedetail  :   RefineDetail instance 
-503   
-504      Return          :   Boolean  
-505      """ 
-506      _STD_RP = 50.0 
-507      MINCHI2 = 1.00 
-508   
-509      therp = refinedetail.getResidueValue(cycle=-1, residname="rp") 
-510      chi2  = refinedetail.getResidueValue(cycle=-1, residname="chi2") 
-511   
-512      if therp < _STD_RP and chi2 > MINCHI2: 
-513          rval =  True 
-514      else: 
-515          rval =  False 
-516   
-517      return rval 
-
        518   
-519   
-
        520 -def loadFit(prjfname): 
-
        521      """ 
-522      Load the fit from a multiple step project file, i.e., the current Fit 
-523   
-524      Argument: 
-525      - prjfname  :   str, project file name 
-526   
-527      Return      :   Fit object 
-528      """ 
-529      import refinemanager as RM 
-530   
-531      msrefmanager = RM.loadMultiStepRefinements(prjfname) 
-532   
-533      if not isinstance(msrefmanager, RM.MultiStepRefineManager): 
-534          errmsg = "datamanager.loadFit():  Input File is Not MultiStepRefineManager Pickel File" 
-535          raise NotImplementedError(errmsg) 
-536   
-537      retfit = msrefmanager.getCurrentFit() 
-538   
-539      return retfit 
-
        540   
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        Class DataManager

        source code

        -
        -object --+
-         |
-        DataManager
-
        - -
        -Data-Manager

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - projfname, - workdir, - tempfit)
        - initialization...        		 - source code - -
        - -
        -   - - - - - - -
        syncData(self)
        - Synchronize data sets in the working directory with the given - project        		 - source code - -
        - -
        -   - - - - - - -
        readXMLProjectFile(self)
        - Read input project file in XML format        		 - source code - -
        - -
        -   - - - - - - -
        getDataFilesList(self)
        - Get the list of data file names (no path)        		 - source code - -
        - -
        -   - - - - - - -
        refine_all(self)
        - Refine all the data file that        		 - source code - -
        - -
        -   - - - - - - -
        save(self)
        - Save the refinement to the project XML file.        		 - source code - -
        - -
        -   - - - - - - -
        continueUponBreak(self)
        - Continue the unfinished refinement from an interruption        		 - source code - -
        - -
        -

        Inherited from object: - __delattr__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__, - __str__ -

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        __init__(self, - projfname, - workdir, - tempfit) -
        (Constructor) -

        -         		source code  -
        - - 
        -
-initialization
-
-Argument:
-- projfname :
-- workdir   :
-- tempfit   :
-
-
        -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        syncData(self) -

        -         		source code  -
        - -

        Synchronize data sets in the working directory with the given - project

        - Return : None -
        -
        -
        -
        - -
        - -
        - - -
        -

        readXMLProjectFile(self) -

        -         		source code  -
        - -

        Read input project file in XML format

        - Return : None -
        -
        -
        -
        - -
        - -
        - - -
        -

        getDataFilesList(self) -

        -         		source code  -
        - -

        Get the list of data file names (no path)

        - Return : list of str, file names -
        -
        -
        -
        - -
        - -
        - - -
        -

        refine_all(self) -

        -         		source code  -
        - -

        Refine all the data file that

        - Return : None -
        -
        -
        -
        - -
        - -
        - - -
        -

        save(self) -

        -         		source code  -
        - -

        Save the refinement to the project XML file.

        - Return : None -
        -
        -
        -
        - -
        - -
        - - -
        -

        continueUponBreak(self) -

        -         		source code  -
        - -

        Continue the unfinished refinement from an interruption

        - Return : None -
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        Module dataprocessnpdf

        source code

        -
        -
-Processing NPDF data
-class NPDFData:
-    def __init__(self):
-    def importNPDFData(self)
-    def exportFullprof(self, ofilename="bankdata.dat"):
-
-


        - - - - - - - - - - -
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        Classes[hide private]
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        -   - - NPDFData
        - NPDF data processing class... -
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        Functions[hide private]
        -
        -   - - - - - - -
        exportRawGSA(gsafname, - iparmfname, - bankid, - expfname)
        - Using rawplot to export diffraction pattern from raw GSAS file...        		 - source code - -
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        -   - - __id__ = '$Id: dataprocessnpdf.py 2918 2009-03-18 19:26:39Z wd... -
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        Function Details[hide private]
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        exportRawGSA(gsafname, - iparmfname, - bankid, - expfname) -

        -         		source code  -
        - - 
        -
-Using rawplot to export diffraction pattern from raw GSAS file
-
-Argument:
-- gsafname  :   str, GSA file name
-- iparmfname:   str, iparm (GSAS) parameter file
-- bankid    :   int, bank ID
-- expfname  :   str, exported file name
-
-Return      :   None
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        Variables Details[hide private]
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        __id__

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        Value:
        - 
        -'$Id: dataprocessnpdf.py 2918 2009-03-18 19:26:39Z wdzhou $'
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.dataprocessnpdf-pysrc.html b/static_root/doc/srrietveld/developers/srrietveld.dataprocessnpdf-pysrc.html deleted file mode 100644 index 976079ef..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.dataprocessnpdf-pysrc.html +++ /dev/null @@ -1,355 +0,0 @@ - - - - - srrietveld.dataprocessnpdf - - - - - - - - - - - - - - - - - - - - - - -
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        Source Code for Module srrietveld.dataprocessnpdf

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2008 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Wenduo Zhou 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14  """ 
- 15  Processing NPDF data 
- 16  class NPDFData: 
- 17      def __init__(self): 
- 18      def importNPDFData(self) 
- 19      def exportFullprof(self, ofilename="bankdata.dat"): 
- 20  """ 
- 21   
- 22  __id__ = "$Id: dataprocessnpdf.py 2918 2009-03-18 19:26:39Z wdzhou $" 
- 23   
- 24  import os 
- 25  import math 
- 26   
-
         27 -class NPDFData: 
-
         28      """ 
- 29      NPDF data processing class 
- 30   
- 31      Class Variables: 
- 32   
- 33      - _nx   :   normalized X 
- 34      - _ny   :   normalized Y 
- 35      - _ns   :   normalized sigma 
- 36      """ 
- 37      NumBanks = 4 
- 38   
-
         39 -    def __init__(self, rawgsafname,  iparmfname): 
-
         40          """ 
- 41          Initialization & import data 
- 42   
- 43          Argument: 
- 44          - rawgsafname   :   str, GSAS data file 
- 45          - iparmfname    :   GSAS parameter file 
- 46          """ 
- 47          self._gsafname   = rawgsafname 
- 48          self._iparmfname = iparmfname 
- 49   
- 50          self._nx = {} 
- 51          self._ny = {} 
- 52          self._ns = {} 
- 53   
- 54          for bid in xrange(1, 4+1): 
- 55              self._nx[bid] = [] 
- 56              self._ny[bid] = [] 
- 57              self._ns[bid] = [] 
- 58   
- 59          return 
-
         60   
- 61   
-
         62 -    def importNPDFData(self, bankid): 
-
         63          """ Import Non-normalized NPDF data from a file 
- 64          File format is assumed to be in TOF-Intensity-IncidentSpectral format 
- 65   
- 66          Argument: 
- 67          - bankid    :   int 
- 68   
- 69          Return          :   None 
- 70          """ 
- 71          # 1. Convert GSA data to X-Y data 
- 72          expfname = "gsatemp"+str(bankid)+".dat" 
- 73          exportRawGSA(self._gsafname, self._iparmfname, bankid, expfname) 
- 74   
- 75          # 2. Import converted GSAS data file 
- 76          ifile = open(expfname, "r") 
- 77          lines = ifile.readlines() 
- 78          ifile.close() 
- 79          rmcmd = "rm %-15s"% (expfname) 
- 80          os.system(rmcmd) 
- 81   
- 82          xs = [] 
- 83          ys = [] 
- 84          ss = [] 
- 85          Is = [] 
- 86   
- 87          for lindex in xrange(1, len(lines)): 
- 88              cline = lines[lindex].strip() 
- 89              terms = cline.split() 
- 90              x = float(terms[0]) 
- 91              y = float(terms[1]) 
- 92              i = float(terms[2]) 
- 93              s = math.sqrt(y) 
- 94   
- 95              xs.append(x) 
- 96              ys.append(y) 
- 97              ss.append(s) 
- 98              Is.append(i) 
- 99   
-100          # 3. Normalize 
-101          self.normalize(bankid, xs, ys, ss, Is) 
-102   
-103          return 
-
        104   
-105   
-
        106 -    def normalize(self, bankid, xs, ys, ss, Is): 
-
        107          """ Normalize the input data 
-108          1. normalize the data from a certain bank 
-109          2. put the normalized data to instance data structure 
-110   
-111          Argument: 
-112          - bankid    :   int, bank ID 
-113          - xs        :   list  
-114          - ys        :   list 
-115          - ss        :   list 
-116          - Is        :   list 
-117           
-118          Return  :   None 
-119          """ 
-120          for index in xrange(len(xs)): 
-121              # 1. norm 
-122              nx = xs[index]*1000    
-123              ny = ys[index]/Is[index] 
-124              ns = ny*(ss[index]/ys[index]) 
-125   
-126              # 2. store 
-127              self._nx[bankid].append(nx) 
-128              self._ny[bankid].append(ny) 
-129              self._ns[bankid].append(ns) 
-130          # LOOP-OVER: for index in xrange(len(self._xs)) 
-131   
-132          return 
-
        133   
-134   
-
        135 -    def exportFullprof(self, bankid, ofilenameroot="bankdata", newdir = ""): 
-
        136          """ 
-137          Export normalized data to Fullprof readable format 
-138   
-139          Argument: 
-140          - bankid        :   int 
-141          - ofilenameroot :   str 
-142          - newdir        :   str 
-143   
-144          Return          :   str, File Name 
-145          """ 
-146          # 1. output file name 
-147          if newdir != "" and newdir[-1] != "/": 
-148              newdir = newdir + "/" 
-149          ofilename = newdir + ofilenameroot+str(bankid)+".dat" 
-150   
-151          # 2. write out if file does not exist 
-152          if not os.path.isfile(ofilename): 
-153              # 2.1 Import the bank data 
-154              self.importNPDFData(bankid) 
-155              fstring = "" 
-156             
-157              # 2.2. 6 Information Line 
-158              for l in xrange(6): 
-159                  fstring += "#\n" 
-160   
-161              # 2.3 Data line 
-162              for index in xrange(len(self._nx[bankid])): 
-163                  fstring += "%-15s  %-15s  %-15s\n"% \ 
-164                      (self._nx[bankid][index], self._ny[bankid][index], self._ns[bankid][index]) 
-165   
-166              # 2.4 Write file 
-167              ofile = open(ofilename, "w") 
-168              ofile.write(fstring) 
-169              ofile.close() 
-170   
-171          # END-IF 
-172   
-173          return ofilename 
-
        174   
-175  # END-CLASS 
-176   
-177   
-
        178 -def exportRawGSA(gsafname, iparmfname, bankid, expfname): 
-
        179      """ 
-180      Using rawplot to export diffraction pattern from raw GSAS file 
-181   
-182      Argument: 
-183      - gsafname  :   str, GSA file name 
-184      - iparmfname:   str, iparm (GSAS) parameter file 
-185      - bankid    :   int, bank ID 
-186      - expfname  :   str, exported file name 
-187       
-188      Return      :   None 
-189      """ 
-190      # 1. create input file 
-191      cmdchain = "A\nN\n%-15s\nY\n%-15s\n%-5s\nI\nT\nO\n%-15s\nX\n"% \ 
-192          (gsafname, iparmfname, bankid, expfname) 
-193      ofname = "inparameter.txt" 
-194      ofile = open(ofname, "w") 
-195      ofile.write(cmdchain) 
-196      ofile.close() 
-197   
-198      # 2. output 
-199      cmd = "rawplot < %-20s"% (ofname) 
-200      os.system(cmd) 
-201   
-202      return 
-
        203   
-
        -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.dataprocessnpdf.NPDFData-class.html b/static_root/doc/srrietveld/developers/srrietveld.dataprocessnpdf.NPDFData-class.html deleted file mode 100644 index 446acf06..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.dataprocessnpdf.NPDFData-class.html +++ /dev/null @@ -1,389 +0,0 @@ - - - - - srrietveld.dataprocessnpdf.NPDFData - - - - - - - - - - - - - - - - - - - - - - -
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        - - Package srrietveld :: - Module dataprocessnpdf :: - Class NPDFData - - - - - - -
        [hide private]
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        -
        - -

        Class NPDFData

        source code

        -
        -
-NPDF data processing class
-
-Class Variables:
-
-- _nx   :   normalized X
-- _ny   :   normalized Y
-- _ns   :   normalized sigma
-
-


        - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - rawgsafname, - iparmfname)
        - Initialization & import data...        		 - source code - -
        - -
        -   - - - - - - -
        importNPDFData(self, - bankid)
        - Import Non-normalized NPDF data from a file...        		 - source code - -
        - -
        -   - - - - - - -
        normalize(self, - bankid, - xs, - ys, - ss, - Is)
        - Normalize the input data -1.        		 - source code - -
        - -
        -   - - - - - - -
        exportFullprof(self, - bankid, - ofilenameroot='bankdata', - newdir='')
        - Export normalized data to Fullprof readable format...        		 - source code - -
        - -
        - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - NumBanks = 4 -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - rawgsafname, - iparmfname) -
        (Constructor) -

        -         		source code  -
        - - 
        -
-Initialization & import data
-
-Argument:
-- rawgsafname   :   str, GSAS data file
-- iparmfname    :   GSAS parameter file
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        importNPDFData(self, - bankid) -

        -         		source code  -
        - - 
        -Import Non-normalized NPDF data from a file
-File format is assumed to be in TOF-Intensity-IncidentSpectral format
-
-Argument:
-- bankid    :   int
-
-Return          :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        normalize(self, - bankid, - xs, - ys, - ss, - Is) -

        -         		source code  -
        - - 
        -Normalize the input data
-1. normalize the data from a certain bank
-2. put the normalized data to instance data structure
-
-Argument:
-- bankid    :   int, bank ID
-- xs        :   list 
-- ys        :   list
-- ss        :   list
-- Is        :   list
-
-Return  :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        exportFullprof(self, - bankid, - ofilenameroot='bankdata', - newdir='') -

        -         		source code  -
        - - 
        -
-Export normalized data to Fullprof readable format
-
-Argument:
-- bankid        :   int
-- ofilenameroot :   str
-- newdir        :   str
-
-Return          :   str, File Name
-
-
        -
        -
        -
        -
        -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.enduserscripts-module.html b/static_root/doc/srrietveld/developers/srrietveld.enduserscripts-module.html deleted file mode 100644 index 8eb3c083..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.enduserscripts-module.html +++ /dev/null @@ -1,473 +0,0 @@ - - - - - srrietveld.enduserscripts - - - - - - - - - - - - - - - - - - - - - - -
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        - - Package srrietveld :: - Module enduserscripts - - - - - - -
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        -
        - -

        Module enduserscripts

        source code

        -
        -
-End-user scripts/commands to set up a refinement
-
-Providing a set of functions/methods for power users/developers to 
-generate a simple script based on RietveldAPI to do structure refinement.
-
-Warning!  On 2008.10.02 NO OTHER diffpy.srrietveld Script is Using Any Method In This Script Now!
-
-Created on  2008.05.07
-
-Methods List:
-* simpleFit(Data, bgData, Instrument, Model)
-* refineByScript(fit, scriptsfname)
-* plot2D(fit)
-
-Example 1:
-> fit = simpleFit(Data = "mydata.dat", bgData = "mybackground.dat",
-         Instrument = "GEM", Model = ["structure1.cif", structure2.cif"])
-> fit.refine( all )   
-> plot( fit )
-> visualizeStructure( fit )
-
-Example 2: some extra configurability to give the user more control.
-> fit.setFitRange([(begin, end, bankNo),(begin, end, bankNo)...])
-> fit.setExcludedRegion([(begin, end, bankNo),(begin, end, bankNo)...])
-> varList=[latParms, scale]  
-> fit.refine(varList)
-> varList=varList.append([fracCoords])
-> fit.refine(varList)
-
-Example 3:  prints out all the contents of latParms object
-> fit.showLatParms()  
-
-


        - - - - - - - - - - - - - - - - -
        - - - - - -
        Functions[hide private]
        -
        -   - - - - - - -
        simpleFit(Data, - bgData, - Instrument, - Model)
        - generate a Fit instance in a simple setup        		 - source code - -
        - -
        -   - - - - - - -
        refineByScript(fit, - scriptsfname)
        - do a series of refien by scripts...        		 - source code - -
        - -
        -   - - - - - - -
        plot2D(fit)
        - plotting the result of pattern ...        		 - source code - -
        - -
        - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Variables[hide private]
        -
        -   - - __id__ = '$Id: enduserscripts.py 2792 2009-03-02 15:56:43Z wdz... -
        -   - - All = None -
        -   - - zeroShift = <diffpy.srrietveld.refineguides.ZeroGuide instance... -
        -   - - fracCoords = None -
        -   - - latParms = <diffpy.srrietveld.refineguides.LatticeGuide instan... -
        -   - - scale = <diffpy.srrietveld.refineguides.ScaleGuide instance at... -
        -   - - ETA = 1e-06 -
        - - - - - - -
        - - - - - -
        Function Details[hide private]
        -
        - -
        - -
        - - -
        -

        simpleFit(Data, - bgData, - Instrument, - Model) -

        -         		source code  -
        - -

        generate a Fit instance in a simple setup

        -

        Arguements: Data : string, data file name bgData : string, - background data file name (interpolated background) Instrument: string, - instrument name Model : list of string, list of structure file - name

        - Return : Fit instance -
        -
        -
        -
        - -
        - -
        - - -
        -

        refineByScript(fit, - scriptsfname) -

        -         		source code  -
        - - 
        -
-do a series of refien by scripts
-
-Arguement:
-- fit           :   diffpy.rietveldapi.Fit
-- scriptsfname  :   string, script file name
-
-Return          :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        plot2D(fit) -

        -         		source code  -
        - - 
        -
-plotting the result of pattern 
-
-Arguement
-- fit   :   Fit instance
-
-
        -
        -
        -
        -
        -
        - - - - - - -
        - - - - - -
        Variables Details[hide private]
        -
        - -
        - -
        -

        __id__

        - -
        -
        -
        -
        Value:
        - 
        -'$Id: enduserscripts.py 2792 2009-03-02 15:56:43Z wdzhou $'
-
        -
        -
        -
        -
        - -
        - -
        -

        zeroShift

        - -
        -
        -
        -
        Value:
        - 
        -ZeroGuide()
-
        -
        -
        -
        -
        - -
        - -
        -

        latParms

        - -
        -
        -
        -
        Value:
        - 
        -LatticeGuide()
-
        -
        -
        -
        -
        - -
        - -
        -

        scale

        - -
        -
        -
        -
        Value:
        - 
        -ScaleGuide()
-
        -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
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        Source Code for Module srrietveld.enduserscripts

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2008 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Wenduo Zhou 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14  """ 
- 15    End-user scripts/commands to set up a refinement 
- 16   
- 17    Providing a set of functions/methods for power users/developers to  
- 18    generate a simple script based on RietveldAPI to do structure refinement. 
- 19   
- 20    Warning!  On 2008.10.02 NO OTHER diffpy.srrietveld Script is Using Any Method In This Script Now! 
- 21    
- 22    Created on  2008.05.07 
- 23   
- 24    Methods List: 
- 25    * simpleFit(Data, bgData, Instrument, Model) 
- 26    * refineByScript(fit, scriptsfname) 
- 27    * plot2D(fit) 
- 28   
- 29    Example 1: 
- 30    > fit = simpleFit(Data = "mydata.dat", bgData = "mybackground.dat", 
- 31             Instrument = "GEM", Model = ["structure1.cif", structure2.cif"]) 
- 32    > fit.refine( all )    
- 33    > plot( fit ) 
- 34    > visualizeStructure( fit ) 
- 35     
- 36    Example 2: some extra configurability to give the user more control. 
- 37    > fit.setFitRange([(begin, end, bankNo),(begin, end, bankNo)...]) 
- 38    > fit.setExcludedRegion([(begin, end, bankNo),(begin, end, bankNo)...]) 
- 39    > varList=[latParms, scale]   
- 40    > fit.refine(varList) 
- 41    > varList=varList.append([fracCoords]) 
- 42    > fit.refine(varList) 
- 43     
- 44    Example 3:  prints out all the contents of latParms object 
- 45    > fit.showLatParms()   
- 46  """ 
- 47  __id__ = "$Id: enduserscripts.py 2792 2009-03-02 15:56:43Z wdzhou $" 
- 48   
- 49  import diffpy.rietveldapi.Fit as SUFit 
- 50  import diffpy.srrietveld.instrument as IT 
- 51  import modelrw as MRW 
- 52  import midscript as MS 
- 53  from diffpy.srrietveld.refineguides import * 
- 54   
- 55  # Initialize Globle Information about Refinement 
- 56  All         = None 
- 57  zeroShift   = ZeroGuide() 
- 58  fracCoords  = None 
- 59  latParms    = LatticeGuide() 
- 60  scale       = ScaleGuide() 
- 61   
-
         62 -def simpleFit(Data, bgData, Instrument, Model): 
-
         63      """ 
- 64      generate a Fit instance in a simple setup 
- 65   
- 66      Arguements: 
- 67      Data    :   string,     data file name 
- 68      bgData  :   string,     background data file name (interpolated background) 
- 69      Instrument: string,     instrument name 
- 70      Model   :   list of string, list of structure file name 
- 71   
- 72      Return  :   Fit instance 
- 73      """ 
- 74      # 1. initialize Fit() 
- 75      fit = SUFit() 
- 76   
- 77      # 2. get Instrument 
- 78      thisInstrument = IT.getInstrument(Instrument) 
- 79   
- 80      # 3. set up structure 
- 81      # FIXME Need to implement a wrapper on CIF reader 
- 82      phases = [] 
- 83      for ciffname in Model: 
- 84          lattice, spacegroup, atoms = MRW.importCIF(ciffname) 
- 85          phase = MS.initCrystalPhase(lattice, spacegroup, phasename=ciffname) 
- 86          for atom in atoms: 
- 87              MS.addAtom(phase, atom["type"], atom["fraccoordinate"], atom["occ"], atom["biso"]) 
- 88          phases.append(phase)             
- 89   
- 90      # 4. set up RietveldComponent and data, including default excluded region/fit range 
- 91      thisInstrument.setRietveldComponents(fit, Data, bgData, phases) 
- 92   
- 93      return fit 
-
         94   
- 95   
-
         96 -def refineByScript(fit, scriptsfname): 
-
         97      """ 
- 98      do a series of refien by scripts 
- 99   
-100      Arguement: 
-101      - fit           :   diffpy.rietveldapi.Fit 
-102      - scriptsfname  :   string, script file name 
-103   
-104      Return          :   None 
-105      """ 
-106      def getRefineGuideByName(refineguidename): 
-107          """ 
-108          """ 
-109          if refineguidename == "zeroShift": 
-110              return ZeroGuide() 
-111          elif refineguidename == "latParms": 
-112              return LatticeGuide() 
-113          elif refineguidename == "scale": 
-114              return ScaleGuide() 
-115          else: 
-116              wstring = "getRefineGuideByName:   Name %-10s has not been implemented" 
-117              raise NotImplementedError(wstring) 
-
        118   
-119   
-120      # 1. get the refine sequennce list 
-121      sfile = open(scriptsfname, "r") 
-122      lines = sfile.readlines() 
-123      sfile.close() 
-124   
-125      step = 0 
-126      refinedict = {} 
-127      refinelist = [] 
-128      for line in lines: 
-129          lines = line.split("\n")[0].strip() 
-130          if lines[0] == '+' or lines[0] == '-': 
-131              terms = lines.split() 
-132              rlist = refinelist[:] 
-133   
-134              if lines[0] == "+": 
-135                  for gindex in xrange(1, len(terms)): 
-136                      rguide = getRefineGuideByName(terms[gindex]) 
-137                      rlist.append(rguide) 
-138              else: 
-139                  raise NotImplementedError("for - case") 
-140   
-141              refinedict[step] = rlist 
-142              refinelist = rlist[:] 
-143              step += 1 
-144   
-145      totsteps = step 
-146   
-147      # 2. do in steps 
-148      for step in xrange(totsteps): 
-149          refinelist = refinedict[step] 
-150          fit.refine(refinelist) 
-151   
-152      return 
-153   
-154   
-
        155 -def plot2D(fit): 
-
        156      """ 
-157      plotting the result of pattern  
-158   
-159      Arguement 
-160      - fit   :   Fit instance 
-161      """ 
-162      import diffpy.srrietveld.plot2d as P2D 
-163   
-164      P2D.plotFit(fit) 
-165   
-166      # compnum = fit.getNumComponents() 
-167      # for cindex in xrange(compnum): 
-168      #     comp = fit.getComponent(cindex) 
-169      #     pat  = comp.getPattern() 
-170      #     P2D.plotPattern(pat) 
-171   
-172      return 
-
        173   
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        - - Package srrietveld :: - Module gsasfileparser - - - - - - -
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        Module gsasfileparser

        source code

        -

        GSASinstparser.py is to parse the instrument info in .exp/iparm file - to get instrument instance for FullProf and GSAS.

        -

        Created by Peng Tian on 2008-12-19

        - Functionalities: -
          -
        1. - read .exp/.iparm file and fine instrument info -
          2. -
        2. - generate the instrument instance -
          3. -
        -
          -
        • -

          parseGSASiparm(instfilename, bankidlist)

          - genTOFInstrument(infilename, bankidlist): -
          • -


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        importFromGSASexp(expfilename, - bankid)
        - Import a GSAS .exp file for instrument parameters        		 - source code - -
        - -
        -   - - - - - - -
        parseGSASiparm(instfilename, - bankidlist)
        - Import a GSAS instrument file to give data for this instrument object - -Arguments: -- instfilename : full-path name of instrument file; -- bankidlist : list of the number of bank to generate instrument instance.        		 - source code - -
        - -
        -   - - - - - - -
        MapKey(contents, - key)
        - find the line that includes the key in lines...        		 - source code - -
        - -
        -   - - - - - - -
        genTOFInstrument(infilename, - bankidlist)
        - Import Exp/iparm file of a certain banks to an Instrument file...        		 - source code - -
        - -
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        Variables[hide private]
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        -   - - __id__ = '$Id: gsasfileparser.py 2792 2009-03-02 15:56:43Z wdz... -
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        Function Details[hide private]
        -
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        - -
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        importFromGSASexp(expfilename, - bankid) -

        -         		source code  -
        - -

        Import a GSAS .exp file for instrument parameters

        -

        Arguments: a. expfilename : full-path name of .exp file; b. bankid - : the number of bank to generate instrument instance.

        - Return : None -
        -
        -
        -
        - -
        - -
        - - -
        -

        parseGSASiparm(instfilename, - bankidlist) -

        -         		source code  -
        - - 
        -
-Import a GSAS instrument file to give data for this instrument object
-
-Arguments:
-- instfilename  :   full-path name of instrument file;
-- bankidlist    :   list of the number of bank to generate instrument instance.
-
-Return         :    3-tuple: dict (geometry), dict (profile), dict (absorption)
-
-
        -
        -
        -
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        - -
        - -
        - - -
        -

        MapKey(contents, - key) -

        -         		source code  -
        - - 
        -
-find the line that includes the key in lines
-
-Argument:
-- contents  :   list of str
-- key       :   key value
-
-Return      :   Line 
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        genTOFInstrument(infilename, - bankidlist) -

        -         		source code  -
        - - 
        -
-Import Exp/iparm file of a certain banks to an Instrument file
-
-Argument:
-- infilename    :   str, Exp/iparm file name
-- bankidlist    :   list of integer
-
-Return          :   TOFInstrument
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        Variables Details[hide private]
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        __id__

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        Value:
        - 
        -'$Id: gsasfileparser.py 2792 2009-03-02 15:56:43Z wdzhou $'
-
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        Source Code for Module srrietveld.gsasfileparser

        -
        -  1  #!/usr/bin/env python 
-  2  ############################################################################## 
-  3  # 
-  4  # diffpy.srrietveld by DANSE Diffraction group 
-  5  #                   Simon J. L. Billinge 
-  6  #                   (c) 2008 Trustees of the Columbia University 
-  7  #                   in the City of New York.  All rights reserved. 
-  8  # 
-  9  # File coded by:    Wenduo Zhou 
- 10  # 
- 11  # See AUTHORS.txt for a list of people who contributed. 
- 12  # See LICENSE.txt for license information. 
- 13  # 
- 14  ############################################################################## 
- 15  """ 
- 16   GSASinstparser.py is to parse the instrument info in .exp/iparm file 
- 17   to get instrument instance for FullProf and GSAS. 
- 18   
- 19   Created by Peng Tian on 2008-12-19 
- 20   
- 21   Functionalities: 
- 22          1. read .exp/.iparm file and fine instrument info 
- 23          2. generate the instrument instance 
- 24          -  parseGSASiparm(instfilename, bankidlist) 
- 25   
- 26          genTOFInstrument(infilename, bankidlist): 
- 27  """ 
- 28  __id__ = "$Id: gsasfileparser.py 2792 2009-03-02 15:56:43Z wdzhou $" 
- 29   
-
         30 -def importFromGSASexp(expfilename, bankid): 
-
         31      """ 
- 32      Import a GSAS .exp file for instrument parameters  
- 33       
- 34      Arguments: 
- 35      a. expfilename :   full-path name of .exp file; 
- 36      b. bankid      :   the number of bank to generate instrument instance. 
- 37       
- 38      Return         :   None 
- 39      """ 
- 40      try: 
- 41          efile = open(expfilename, "r") 
- 42          self._content= efile.readlines() 
- 43          efile.close() 
- 44      except IOError, err: 
- 45          print "Fatal Error: Cannot Open File %-20s"% (expfilename) 
- 46          raise IOError, err 
- 47       
- 48      line = self.MapKey(contents, "BANK") 
- 49      if int(line[3]) == bankid: 
- 50          pattern_no = int(line[1])  
- 51          term ="HST  %i ICONR"% (pattern_no) 
- 52          line = self.MapKey(term) 
- 53          if line != "": 
- 54              self._geometryparamdict["DIFC/Dtt1"] = float(line[3]) 
- 55              self._geometryparamdict["DIFA/Dtt2"] = float(line[4]) 
- 56          else: 
- 57              print "Incompleted exp file!" 
- 58          term = "HST  %iBNKPAR"% (pattern_no) 
- 59          line = self.MapKey(term) 
- 60          if line != "": 
- 61              self._geometryparamdict["TTheta"] = float(line[3]) 
- 62          else: 
- 63              print "No two-theta info in exp file!" 
- 64   
- 65      term = "HST  %iPRCF"% (pattern_no) 
- 66      line = self.MapKey(term) 
- 67      if line != "": 
- 68          ptyp = int(line[2]) 
- 69          ncof = int(line[3]) 
- 70          self._profileparamdict["Type"] = ptyp 
- 71          self._profileparamdict["Ncof"] = ncof 
- 72       
- 73          term = "HST  %iPRCF%i1"%(pattern_no, ptyp) 
- 74          line = self.MapKey(term) 
- 75          if ptyp == 1: 
- 76              self._profileparamdict["Alph0"] = float(line[2]) 
- 77              self._profileparamdict["Alph1"] = float(line[3]) 
- 78              self._profileparamdict["Alph2"] = float(line[3]) 
- 79              self._profileparamdict["Beta0"] = float(line[4]) 
- 80              self._profileparamdict["Beta1"] = float(line[5]) 
- 81              self._profileparamdict["Beta2"] = float(line[5]) 
- 82              term = "HST  %iPRCF12"%(pattern_no) 
- 83              line = self.MapKey(term) 
- 84              if line != "": 
- 85                  self._profileparamdict["Sig0"] = float(line[2]) 
- 86                  self._profileparamdict["Sig1"] = float(line[3]) 
- 87                  self._profileparamdict["Sig2"] = float(line[4]) 
- 88   
- 89      else: 
- 90          print "No profile information in exp file!"          
- 91       
- 92      return      
-
         93   
- 94   
-
         95 -def parseGSASiparm(instfilename, bankidlist): 
-
         96      """ 
- 97      Import a GSAS instrument file to give data for this instrument object 
- 98       
- 99      Arguments: 
-100      - instfilename  :   full-path name of instrument file; 
-101      - bankidlist    :   list of the number of bank to generate instrument instance. 
-102       
-103      Return         :    3-tuple: dict (geometry), dict (profile), dict (absorption) 
-104      """ 
-105      # 1. Import iparm file 
-106      try: 
-107          ifile = open(instfilename, "r") 
-108          contents= ifile.readlines() 
-109          ifile.close() 
-110      except IOError, err: 
-111          print "Fatal Error: Cannot Open File %-20s"% (instfilename) 
-112          raise IOError, err 
-113   
-114      # 2. Init 
-115      geometryparameter = {} 
-116      profileparameter  = {} 
-117      expdecayparameter = {} 
-118     
-119      # 3. Import 
-120      for bankid in bankidlist: 
-121          # 3.1 Init 
-122          geometryparameter[bankid] = {} 
-123          profileparameter[bankid]  = {} 
-124          expdecayparameter[bankid] = {} 
-125   
-126          # 3.2 Find geometry Dtt1/Dtt2 
-127          term = "INS  %i ICONS"% (bankid) 
-128          line = MapKey(contents, term) 
-129          terms = line.split() 
-130          if line is not None: 
-131              geometryparameter[bankid]["DIFC/Dtt1"] = float(terms[3]) 
-132              geometryparameter[bankid]["DIFA/Dtt2"] = float(terms[4]) 
-133          else: 
-134              errmsg = "Incompleted instrument file!" 
-135              raise NotImplementedError(errmsg) 
-136   
-137          # 3.3 2-theta 
-138          term = "INS  %iBNKPAR"% (bankid) 
-139          line = MapKey(contents, term) 
-140          terms = line.split() 
-141          if line is not None: 
-142              geometryparameter[bankid]["TTheta"] = float(terms[3]) 
-143          else: 
-144              errmsg = "No two-theta info in instrument file!" 
-145              raise NotImplementedError(errmsg) 
-146   
-147          # 3.4 Profile & Decay 
-148          term = "INS  %iPRCF"% (bankid) 
-149          line = MapKey(contents, term) 
-150          if line is not None: 
-151              terms = line.split() 
-152              ptyp = int(terms[2]) 
-153              ncof = int(terms[3]) 
-154              profileparameter[bankid]["Ncof"] = ncof 
-155           
-156              term1 = "INS  %iPRCF%i1"%(bankid, ptyp) 
-157              line1 = MapKey(contents, term1) 
-158              if ptyp == 1: 
-159                  # Exp Decay 
-160                  terms = line1.split() 
-161                  profileparameter[bankid]["Type"]   = "PseudoVoigtExp" 
-162                  expdecayparameter[bankid]["alpha0"] = float(terms[2]) 
-163                  expdecayparameter[bankid]["alpha1"] = float(terms[3]) 
-164                  expdecayparameter[bankid]["beta0"] = float(terms[4]) 
-165                  expdecayparameter[bankid]["beta1"] = float(terms[5]) 
-166                  term2 = "INS  %iPRCF12"%(bankid) 
-167                  line2 = MapKey(contents, term2) 
-168                  if line is not None: 
-169                      terms = line2.split() 
-170                      profileparameter[bankid]["sigma0"] = float(terms[2]) 
-171                      profileparameter[bankid]["sigma1"] = float(terms[3]) 
-172                      profileparameter[bankid]["sigma2"] = float(terms[4]) 
-173          else: 
-174              errmsg = "No profile information in instrument file!"          
-175              raise NotImplementedError(errmsg) 
-176   
-177      # LOOP-OVER: for bankid in bankidlist: 
-178          
-179      return geometryparameter, profileparameter, expdecayparameter 
-
        180   
-181  # END-FUNCTION-DEF 
-182           
-183           
-
        184 -def MapKey(contents, key): 
-
        185      """ 
-186      find the line that includes the key in lines 
-187   
-188      Argument: 
-189      - contents  :   list of str 
-190      - key       :   key value 
-191   
-192      Return      :   Line  
-193      """ 
-194      rline = None 
-195   
-196      for line in contents: 
-197          if line.count(key) == 1: 
-198              rline = line 
-199              break 
-200   
-201      return rline 
-
        202   
-203   
-
        204 -def genTOFInstrument(infilename, bankidlist): 
-
        205      """ 
-206      Import Exp/iparm file of a certain banks to an Instrument file 
-207   
-208      Argument: 
-209      - infilename    :   str, Exp/iparm file name 
-210      - bankidlist    :   list of integer 
-211   
-212      Return          :   TOFInstrument 
-213      """ 
-214      import diffpy.srrietveld.instrument as INS 
-215      # 1. Figure out file type 
-216      posfix = infilename.split(".")[1].lower() 
-217      filetype = posfix 
-218   
-219      # 2. Import file 
-220      if filetype == "exp": 
-221          raise NotImplementedError("Modify parseGSASExp()") 
-222   
-223      elif filetype == "iparm": 
-224          geometrydict, peakprofiledict, expdecaydict = parseGSASiparm(infilename, bankidlist) 
-225   
-226      # 3. Generate TOF instrument 
-227      instrument = INS.TOFInstrument() 
-228   
-229      for bankid in bankidlist: 
-230          dtt1 = geometrydict[bankid]["DIFC/Dtt1"] 
-231          dtt2 = geometrydict[bankid]["DIFA/Dtt2"] 
-232          tthe = geometrydict[bankid]["TTheta"] 
-233          xcross = 1.0 
-234          width  = 1.0 
-235          range  = (4000.00, 44985.00, 2.00) 
-236          instrument.setBankInfo(bankid, dtt1, dtt2, tthe, xcross, width, range=range, \ 
-237              peakprofile=peakprofiledict[bankid], expdecay=expdecaydict[bankid]) 
-238   
-239      return instrument 
-
        240   
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        Module instrument

        source code

        -
        -Classes for Instrument-Specified Refinement Setup
-
-  Created On  :   2008.05.08
-
-List of Classes
-  * Instrument
-  |       -  __init__(self, name="Instrument")
-  |       -  getName()
-  |       -  getType()
-  |       -  getBackgroundType()
-  |       -  genMeasurement(self, datafilename="fakedata.dat")
-  |
-  |       -  genRietveldComponents(self, fit, Data, bgData):
-  |       -  setPhase(self, fit, lattice, atomlist)
-  |       -  setPeakProfileInfo(self, parameterdict)
-  |       -  setZero(self, zshift=None)
-  |
-  |       -  importFromFit(self, myfit)
-  |       -  importRietveldObject(self, rietobj)
-  |
-  |-- ThermalNeutronTOFInstrument
-  |       - getBankNumbersList(self)
-  |       - getBankInfoDict(self, bankno)
-  |
-  |-- ConstWavelengthInstrument
-    |
-    |-- XrayInstrument
-        - addExcludedRegion(self, begin, end)
-        - getExcludedRegions(self)
-    |-- NeutronCWInstrument
-  
-
-External Methods List:
-  * getInstrument(instrumentName)
-  * isPatternOneBank(thefit, thepat)
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - - -
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        Classes[hide private]
        -
        -   - - Instrument
        - base class for all Instrument-Specified refinement setup - classes -
        -   - - ConstWavelengthInstrument
        - constant wavelength diffractometer, will be extended to -(1) Xray -(2) CWNeutron - -The infodict should be in the structure as: -Instrument: Name, Type, - | - |--- ENERGY: Lambda, Lambda1, ... -
        -   - - XrayInstrument
        - Constrant wave X-ray diffractometer -
        -   - - NeutronCWInstrument
        - Constrant wave X-ray diffractometer -
        -   - - TOFInstrument
        - General Time-of-flight (TOF) instrument -
        -   - - ThermalNeutronTOFInstrument
        - General Thermal Neutron TOF instrument -
        - - - - - - - - - - - - -
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        Functions[hide private]
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        -   - - - - - - -
        getInstrument(instrumentName)
        - initialize an extended Instrument instance by instrumentName        		 - source code - -
        - -
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        isPatternOneBank(thefit, - thepat)
        - Judge whether the given pattern is one of the banks in a multiple-bank ...        		 - source code - -
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        - - - - - -
        Variables[hide private]
        -
        -   - - __id__ = '$Id: instrument.py 2918 2009-03-18 19:26:39Z wdzhou $' -
        -   - - myEngine = <diffpy.srrietveld.refinebackend.RietveldEngine ins... -
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        Function Details[hide private]
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        getInstrument(instrumentName) -

        -         		source code  -
        - -

        initialize an extended Instrument instance by instrumentName

        -

        Arguement: instrumentName : string, name of an instrument

        - Return : Instrument instance -
        -
        -
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        isPatternOneBank(thefit, - thepat) -

        -         		source code  -
        - - 
        -
-Judge whether the given pattern is one of the banks in a multiple-bank 
-diffractometer
-
-Justification:  Diffraction data coming from the same instrument but different time
-will correspond to different Instrument instance in initial configuration
-
-Argument:
-- thefit    :   Fit instance
-- thepat    :   Pattern instance
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        myEngine

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        - 
        -<diffpy.srrietveld.refinebackend.RietveldEngine instance at 0xb7ac124c\
->
-
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        Source Code for Module srrietveld.instrument

        -
        -   1  ############################################################################## 
-   2  # 
-   3  # diffpy.srrietveld by DANSE Diffraction group 
-   4  #                   Simon J. L. Billinge 
-   5  #                   (c) 2008 Trustees of the Columbia University 
-   6  #                   in the City of New York.  All rights reserved. 
-   7  # 
-   8  # File coded by:    Wenduo Zhou 
-   9  # 
-  10  # See AUTHORS.txt for a list of people who contributed. 
-  11  # See LICENSE.txt for license information. 
-  12  # 
-  13  ############################################################################## 
-  14  """ Classes for Instrument-Specified Refinement Setup 
-  15   
-  16    Created On  :   2008.05.08 
-  17   
-  18  List of Classes 
-  19    * Instrument 
-  20    |       -  __init__(self, name="Instrument") 
-  21    |       -  getName() 
-  22    |       -  getType() 
-  23    |       -  getBackgroundType() 
-  24    |       -  genMeasurement(self, datafilename="fakedata.dat") 
-  25    | 
-  26    |       -  genRietveldComponents(self, fit, Data, bgData): 
-  27    |       -  setPhase(self, fit, lattice, atomlist) 
-  28    |       -  setPeakProfileInfo(self, parameterdict) 
-  29    |       -  setZero(self, zshift=None) 
-  30    | 
-  31    |       -  importFromFit(self, myfit) 
-  32    |       -  importRietveldObject(self, rietobj) 
-  33    | 
-  34    |-- ThermalNeutronTOFInstrument 
-  35    |       - getBankNumbersList(self) 
-  36    |       - getBankInfoDict(self, bankno) 
-  37    | 
-  38    |-- ConstWavelengthInstrument 
-  39      | 
-  40      |-- XrayInstrument 
-  41          - addExcludedRegion(self, begin, end) 
-  42          - getExcludedRegions(self) 
-  43      |-- NeutronCWInstrument 
-  44     
-  45   
-  46  External Methods List: 
-  47    * getInstrument(instrumentName) 
-  48    * isPatternOneBank(thefit, thepat) 
-  49   
-  50  """ 
-  51   
-  52  __id__ = "$Id: instrument.py 2918 2009-03-18 19:26:39Z wdzhou $" 
-  53   
-  54  from diffpy.srrietveld              import * 
-  55  from diffpy.refinementapi.errors    import  FitConfigurationError 
-  56  import diffpy.srrietveld.xmlgenerator as XMLG 
-  57  import diffpy.srrietveld.xmlinterface as XMLI 
-  58   
-
          59 -class Instrument: 
-
          60      """ base class for all Instrument-Specified refinement setup classes 
-  61      """ 
-  62   
-
          63 -    def __init__(self, name="Instrument"): 
-
          64          """ 
-  65          initialization 
-  66          """ 
-  67          self._Name = name 
-  68   
-  69          self._backgroundType   = None 
-  70          self._background       = {} 
-  71          self._profileparamdict = {} 
-  72   
-  73          return 
-
          74   
-
          75 -    def __str__(self): 
-
          76          """ 
-  77          Customized format output 
-  78   
-  79          Return  :   str 
-  80          """ 
-  81          rstring  = "Instrument:  %-20s\n"% (self._Name) 
-  82   
-  83          return rstring 
-
          84   
-  85   
-
          86 -    def getName(self): 
-
          87          """ 
-  88          Give the name of the instrument 
-  89   
-  90          Return  :   str 
-  91          """ 
-  92          return self._Name 
-
          93   
-  94   
-
          95 -    def getType(self): 
-
          96          """ 
-  97          Give the type of the instrument 
-  98   
-  99          Return  :   str 
- 100          """ 
- 101          return self._Type 
-
         102   
- 103   
-
         104 -    def getBackgroundType(self): 
-
         105          """ 
- 106          Give the type of the background 
- 107   
- 108          Return  :   str 
- 109          """ 
- 110          return self._backgroundType 
-
         111   
- 112   
-
         113 -    def genRietveldComponent(self): 
-
         114          """ Generate and optionally add a RietveldComponenet to a Fit instance 
- 115          of virtual/baseclass Instrument 
- 116          """ 
- 117          errmsg = "method %-20s is virtual"% ("Instrument.setRietveldComponents") 
- 118          raise NotImplementedError(errmsg) 
- 119   
- 120          return 
-
         121   
- 122   
-
         123 -    def setPhase(self, fit, lattice, atomlist): 
-
         124          """ 
- 125          set up a (single) phase model to each RietveldComponent in a Fit instance 
- 126          including 
- 127          1. Lattice 
- 128          2. Atoms 
- 129          3. (default) Peak profile (instrument dependent) 
- 130   
- 131          Return  :   None 
- 132          """ 
- 133          errmsg = "method %-20s is virtual"% ("Instrument.setPhase") 
- 134          raise NotImplementedError(errmsg) 
- 135   
- 136          return 
-
         137   
- 138   
-
         139 -    def setPeakProfileInfo(self, parameterdict): 
-
         140          """ 
- 141          import some parameters to PeakProfile's parameter dictionary 
- 142   
- 143          Argument: 
- 144          - parameterdict :   dictionary key = parameter name, val = value 
- 145   
- 146          Return          :   None 
- 147          """ 
- 148          for paraname in parameterdict.keys(): 
- 149              self._profileparamdict[paraname] = parameterdict[paraname] 
- 150   
- 151          return 
-
         152   
- 153   
-
         154 -    def setZero(self, zshift=None): 
-
         155          """ 
- 156          Set zero-shift 
- 157   
- 158          Argument: 
- 159          - zshift    :   float 
- 160   
- 161          Return      :   None 
- 162          """ 
- 163          errmsg = "Function setZero() is Virtual in Base Class Instrument. \n" 
- 164          errmsg = "Class %-15s Must Implement Its Own"% (self.__class__.__name__) 
- 165          raise NotImplementedError(errmsg) 
-
         166   
- 167   
-
         168 -    def importFromFit(self, myfit): 
-
         169          """ 
- 170          Import a RietvledAPI.Fit instance to give data to this Instrument object 
- 171   
- 172          Virtual base class method 
- 173   
- 174          Arguments: 
- 175          - myfit     :   diffpy.rietveldapi.Fit instance 
- 176   
- 177          Return      :   None 
- 178          """ 
- 179          errmsg = "Virtual class method cannot be used; Implemented %-20s"% \ 
- 180              (self.__class__.__name__) 
- 181          raise NotImplementedError(errmsg) 
- 182   
- 183          return 
-
         184   
- 185   
-
         186 -    def importRietveldObject(self, rietobj): 
-
         187          """ 
- 188          Import a Rietveld object's parameters to a dictionary 
- 189   
- 190          Return  :   dict 
- 191          """ 
- 192          paramdict = {} 
- 193   
- 194          paramdict["Type"] = rietobj.__class__.__name__ 
- 195          for paramname in rietobj.getRefinableParameters(): 
- 196              paramdict[paramname] = rietobj.getValue(paramname) 
- 197   
- 198          return paramdict 
-
         199   
- 200   
-
         201 -    def genMeasurement(self, refinebankidlist, datafilenamedict, userrangedict, 
- 202              userexcludedregiondict, bgpointsdict): 
-
         203          """ Generate a Measurement from from base-class Instrument 
- 204   
- 205          Arguement: 
- 206          - datafilename  :   str 
- 207   
- 208          Return          :   Measurement instance 
- 209          """ 
- 210          if self.__class__.__name__ == "Instrument": 
- 211              errmsg = "Method genMeasurement should be implemented by extended class %-20s"% \ 
- 212                  (self.__class__.__name__) 
- 213              raise NotImplementedError, errmsg 
- 214   
- 215          if not isinstance(bgpointsdict, dict): 
- 216              errmsg = "Background Dictionary Is Not Set Up Right" 
- 217              raise NotImplementedError, errmsg 
- 218   
- 219          return None 
-
         220   
- 221   
-
         222 -class ConstWavelengthInstrument(Instrument): 
-
         223      """ 
- 224      constant wavelength diffractometer, will be extended to 
- 225      (1) Xray 
- 226      (2) CWNeutron 
- 227   
- 228      The infodict should be in the structure as: 
- 229      Instrument:  Name, Type,  
- 230        | 
- 231        |--- ENERGY: Lambda, Lambda1, ... ... 
- 232        | 
- 233        |--- PEAKPROFIEL:  Type, U, V, W, ... ... 
- 234        | 
- 235        |--- SETUP (Experiement Setup):  
- 236        |       | 
- 237        |       |--- EXCLUDEDREGION 
- 238        |       | 
- 239        |       |--- Fit Range 
- 240        | 
- 241        |--- BACKGROUND: Type, Coefficients, ... .. 
- 242      """ 
-
         243 -    def __init__(self, wavelength, resolution, peakprofiledict, name="Constant Wave Instrument", wavelength2=None, ratio=0.0, backgroundinfodict=None): 
-
         244          """ 
- 245          initialization 
- 246   
- 247          Argument: 
- 248          wavelength      :   float, main wavelength 
- 249          resolution      :   float 
- 250          peakprofiledict :   dictionary for peak profile type and paraemeters 
- 251          name            :   string 
- 252          wavelength2     :   2nd beam's wavelength 
- 253          ratio           :   float 
- 254          """ 
- 255          Instrument.__init__(self, name) 
- 256   
- 257          self._infodict = {} 
- 258          self._Type     = "Constant Wave Length" 
- 259         
- 260          # Level 2 Dictionary 
- 261          self._infodict["ENERGY"]      = {} 
- 262          self._infodict["SETUP"]       = {} 
- 263          self._infodict["SETUP"]["EXCLUDEDREGION"] = [] 
- 264          if peakprofiledict is None: 
- 265              self._infodict["PEAKPROFILE"] = {} 
- 266          elif isinstance(peakprofiledict, dict): 
- 267              self._infodict["PEAKPROFILE"] = peakprofiledict 
- 268          else: 
- 269              raise FitConfigurationError("Incorrect peakprofiledict Type") 
- 270   
- 271   
- 272          # Leve 3: Energy 
- 273          self._infodict["ENERGY"]["Lambda"]          = wavelength 
- 274          self._infodict["ENERGY"]["Lambda2"]         = wavelength2 
- 275          self._infodict["ENERGY"]["Ratio"]           = ratio 
- 276          self._infodict["ENERGY"]["Resolution"]      = resolution 
- 277   
- 278          # Leve 3: Background 
- 279          if backgroundinfodict is not None: 
- 280              self._infodict["BACKGROUND"] = backgroundinfodict 
- 281          else: 
- 282              self._infodict["BACKGROUND"]  = {} 
- 283   
- 284          return 
-
         285   
- 286   
-
         287 -    def __str__(self): 
-
         288          """ 
- 289          Customized format output 
- 290   
- 291          Return  :   str 
- 292          """ 
- 293          rstring  = Instrument.__str__(self)+"\n" 
- 294   
- 295          for tname in sorted(self._infodict.keys()): 
- 296              rstring += "  %-20s = %-20s\n"% (tname, self._infodict[tname]) 
- 297   
- 298          return rstring 
-
         299   
- 300   
-
         301 -    def getWaveLength(self): 
-
         302          """ 
- 303          Return the wave-length  
- 304   
- 305          Return  :   float 
- 306          """ 
- 307          lambda1 = self._infodict["ENERGY"]["Lambda"] 
- 308          lambda2 = self._infodict["ENERGY"]["Lambda2"] 
- 309          ratio   = self._infodict["ENERGY"]["Ratio"] 
- 310   
- 311          if abs(lambda1-lambda2) > 1.0E-5 and abs(ratio) > 1.0E-5: 
- 312              raise NotImplementedError("Not Considering 2-Lambda Case yet") 
- 313          else: 
- 314              return lambda1 
-
         315   
- 316       
-
         317 -    def genRietveldComponent(self, datafile, backgrounddict, measurerange,  
- 318              excludedregionslist, structure, myfit, bankno=-1): 
-
         319          """ CW Wavelengvth Instrument: Generate and optionally add a  
- 320          RietveldComponenet to a Fit instance with extra-measurement information 
- 321          An individual instrument can have one and only one structure  
- 322   
- 323          Virtual in ConstWavelengthInstrument 
- 324   
- 325          Argument: 
- 326          ...  
- 327          - backgrounddict    :   dictionary for background information 
- 328                                  if string at position 0 is I, interpolated  
- 329                                  background coming from a file 
- 330                                  if string at position 0 is P, polynomial  
- 331                                  background 
- 332   
- 333          Return              :   RietveldComponent object 
- 334          """ 
- 335          RC = myEngine.getRietveldEngineModule("RietveldComponent") 
- 336          import midscript as MS 
- 337   
- 338          # 1. check 
- 339          if self.__class__.__name__ == "ConstWavelengthInstrument": 
- 340              errmsg = "%-15s is Virtual, Cannot be Called!"% (self.__class__.__name) 
- 341              raise FitConfigurationError(errmsg) 
- 342   
- 343          # 2. generate component and add to Fit optionally 
- 344          comp = RC.RietveldComponent() 
- 345          if myfit is not None: 
- 346              myfit.addComponent(comp) 
- 347              myfit.setInstrument(myinstrument = self, bankid = -1, component = comp) 
- 348          else: 
- 349              errmsg = "When will Fit add this Component?" 
- 350              raise NotImplementedError, errmsg 
- 351          # END-IF-ELSE 
- 352   
- 353          # 3. pattern, background, range, resolution, and excluded regions 
- 354          comp.setPattern(self.temp_pattern) 
- 355   
- 356          # 3.1 Set Background 
- 357          if backgrounddict is None: 
- 358              # the default situation is not developed yet! 
- 359              raise NotImplementedError("Notice Developer") 
- 360   
- 361          else: 
- 362              # Measurement overrides, generate a background 
- 363              # Instantiate Background and set  
- 364              type = backgrounddict["Type"] 
- 365   
- 366              if type[0] == "I": 
- 367                  format = backgrounddict["Format"] 
- 368                  if format == "File": 
- 369                      raise NotImplementedError("Haven't Decided Where to Read In Background File") 
- 370                  elif format == "Selected": 
- 371                      backgroundpoints = backgrounddict["Selected"] 
- 372                  background = MS.initInterpolatedBackground(backgroundpoints) 
- 373               
- 374              elif type[0] == "P": 
- 375                  desireorder      = backgrounddict["Order"] 
- 376                  backgroundPoints = backgrounddict["Points"] 
- 377                  if backgroundPoints is None or len(backgroundPoints) == 0: 
- 378                      backgroundPoints = [backgrounddict["Bkpos"]] 
- 379                  background  = MS.initPolynomialBackground(backgroundPoints, desireorder) 
- 380              else: 
- 381                  errmsg = "Background Type = %-10 Is Not Supported"% (backgroundtuple[0]) 
- 382                  raise NotImplementedError(errmsg) 
- 383              # END-IF 
- 384              if self._infodict["BACKGROUND"].has_key("Bkpos"): 
- 385                  background.setOrigin(self._infodict["BACKGROUND"]["Bkpos"]) 
- 386   
- 387              comp.setBackground(background) 
- 388           
- 389          # END-IF-else: 
- 390   
- 391          self.temp_pattern.setResolution(self._infodict["ENERGY"]["Resolution"]) 
- 392          self.temp_pattern.setMeasureRange(measurerange) 
- 393   
- 394          # 3.2 set excluded region and zero 
- 395          completeregions = self._infodict["SETUP"]["EXCLUDEDREGION"][:] 
- 396          if excludedregionslist is not None: 
- 397              completeregions.extend(excludedregionslist) 
- 398   
- 399          for excludedregion in completeregions: 
- 400              exregion = (excludedregion["Begin"], excludedregion["End"]) 
- 401              self.temp_pattern.addExcludedRegion(exregion) 
- 402   
- 403          self.temp_pattern.setValue("zshift", self._infodict["SETUP"]["Zero"]) 
- 404   
- 405          # 4. phase and peak profile 
- 406          for phase in structure: 
- 407              peakprofile = MS.genPeakProfile(self._infodict["PEAKPROFILE"]["Type"],  
- 408                      self._profileparamdict) 
- 409              phase.setPeakProfile(peakprofile) 
- 410              comp.addPhase(phase) 
- 411          # LOOP-OVER 
- 412   
- 413          # 5. clean 
- 414          self.temp_pattern = None 
- 415   
- 416          return comp 
-
         417   
- 418   
-
         419 -    def addExcludedRegion(self, begin, end): 
-
         420          """ 
- 421          Add excluded region to Constant Wave Insturment setup 
- 422   
- 423          Argument: 
- 424          - begin :   float 
- 425          - end   :   float 
- 426   
- 427          Return  :   None 
- 428          """ 
- 429          # FIXME An algorithm is anticipated to combine excluded region with overlap 
- 430          self._infodict["SETUP"]["EXCLUDEDREGION"].append( {"Begin":begin, "End":end} ) 
- 431   
- 432          return 
-
         433   
- 434   
-
         435 -    def getExcludedRegions(self): 
-
         436          """ 
- 437          Return all the excluded region 
- 438   
- 439          Return  :   None 
- 440          """ 
- 441          return self._infodict["SETUP"]["EXCLUDEDREGION"] 
-
         442   
- 443   
-
         444 -    def setZero(self, zshift=None): 
-
         445          """ 
- 446          Set zero-shift for an Constant Wave Instrument (1-bank) 
- 447   
- 448          Argument: 
- 449          - zshift    :   float 
- 450   
- 451          Return      :   None 
- 452          """ 
- 453          self._infodict["SETUP"]["Zero"] = zshift 
- 454   
- 455          return 
-
         456   
- 457   
-
         458 -    def importFromFit(self, myfit): 
-
         459          """ 
- 460          Import a RietvledAPI.Fit instance to give data to this 
- 461          Constant Wave Insturment 
- 462   
- 463          Arguments: 
- 464          - myfit     :   diffpy.rietveldapi.Fit instance 
- 465   
- 466          Return      :   None 
- 467          """ 
- 468          import diffpy.rietveldapi.backgrounds as APIBKGD 
- 469   
- 470          numcomp = myfit.getNumComponents() 
- 471          for nindex in xrange(numcomp): 
- 472              comp  = myfit.getComponent(nindex) 
- 473              pat   = comp.getPattern() 
- 474              phase = comp.getPhase(0)    # use first phase as type 
- 475              background = comp.getBackground() 
- 476              peakprofile = phase.getPeakProfile() 
- 477   
- 478              # Get Value Pertinent to Bank and Pattern 
- 479              self._infodict["ENERGY"]["Lambda"]   = pat.getPrimaryWavelength() 
- 480              self._infodict["ENERGY"]["Lambda2"]  = pat.getSecondaryWavelength() 
- 481              self._infodict["ENERGY"]["Resolution"]    = pat.getResolution() 
- 482   
- 483              # Excluded Region 
- 484              self._infodict["SETUP"]["EXCLUDEDREGION"] = [] 
- 485              for exregion in pat.getExcludedRegionsList(): 
- 486                  exdict = {} 
- 487                  exdict["Begin"] = exregion[0] 
- 488                  exdict["End"]   = exregion[1] 
- 489                  self._infodict["SETUP"]["EXCLUDEDREGION"].append(exdict) 
- 490              self._infodict["SETUP"]["Zero"] = pat.getValue("zshift") 
- 491   
- 492              # PeakProfile 
- 493              self._infodict["PEAKPROFILE"] = self.importRietveldObject(peakprofile) 
- 494   
- 495              # Background 
- 496              if isinstance(background, APIBKGD.PolynomialBackground): 
- 497                  # Polynomail 
- 498                  self._infodict["BACKGROUND"] = {} 
- 499                  self._infodict["BACKGROUND"]["Type" ] = "Polynomial" 
- 500                  self._infodict["BACKGROUND"]["Order"] = str(background.getOrder()) 
- 501                  self._infodict["BACKGROUND"]["Bkpos"] = str(background.getOrigin()) 
- 502                  coeffstring = "" 
- 503                  starttowrite = False 
- 504                  for i in xrange(12): 
- 505                      parname = "b"+str(12-i) 
- 506                      parval  = background.getValue(parname) 
- 507                      # 1. turn the flag on for the 1st non-zero 
- 508                      if abs(parval) > 1.0E-8: 
- 509                          if starttowrite is False: 
- 510                              starttowrite = True 
- 511                      # 2. write on 
- 512                      if starttowrite is True: 
- 513                          coeffstring = str(parval) + "  " + coeffstring 
- 514                  # LOOP-OVER 
- 515   
- 516                  self._infodict["BACKGROUND"]["Coefficients"] = coeffstring 
- 517   
- 518              elif isinstance(background, APIBKGD.InterpolatedBackground): 
- 519                  # FIXME not sure making sense self._infodict["BACKGROUND"]["Bkpos"] = str(background.getOrigin()) 
- 520                  self._infodict["BACKGROUND"]["Type" ] = "Interpolated" 
- 521              else: 
- 522                  self._infodict["BACKGROUND"] = self.importRietveldObject(background) 
- 523   
- 524          # LOOP-OVER:  for nindex in xrange(numcomp): 
- 525   
- 526          return 
-
         527   
- 528   
-
         529 -class XrayInstrument(ConstWavelengthInstrument): 
-
         530      """ 
- 531      Constrant wave X-ray diffractometer 
- 532      """ 
-
         533 -    def __init__(self, wavelength=None, resolution=None, peakprofiledict=None,  
- 534              name="Xray Diffractometer", wavelength2=None, ratio=0.0,  
- 535              backgroundinfodict=None): 
-
         536          """ 
- 537          initialization 
- 538   
- 539          Arguement: 
- 540          - peakprofiledict   :   dictionary, information and parameters of profile 
- 541          """ 
- 542          ConstWavelengthInstrument.__init__(self, wavelength, resolution, peakprofiledict, name, wavelength2, ratio, backgroundinfodict) 
- 543   
- 544          self._Type = "Xray" 
- 545          self._backgroundType = "Interpolation" 
- 546          self._infodict["BACKGROUND"]["Type"]  = "Linear Interpolation" 
- 547   
- 548          return 
-
         549   
- 550   
-
         551 -    def __str__(self): 
-
         552          """ 
- 553          Customized format output 
- 554   
- 555          Return  :   str 
- 556          """ 
- 557          rstring  = ConstWavelengthInstrument.__str__(self) 
- 558          rstring += "Instrument Type: Xray" 
- 559   
- 560          return rstring 
-
         561   
- 562   
-
         563 -    def genRietveldComponent(self, datafile, backgroundtuple, measurerange,  
- 564              excludedregionslist, structure, myfit=None, bankno=-1): 
-
         565          """ Generate and optionally add a RietveldComponenet to a Fit instance 
- 566          by an X-ray Instrument 
- 567   
- 568          Argument: 
- 569          ...  
- 570          ... 
- 571   
- 572          Return  :   ... ... 
- 573          """ 
- 574          import midscript as MS 
- 575          PS = myEngine.getRietveldEngineModule("patternparsers") 
- 576   
- 577          # 1. Obtain required information from info-dict 
- 578          wavelength  = self._infodict["ENERGY"]["Lambda"] 
- 579          wavelength2 = self._infodict["ENERGY"]["Lambda2"]       
- 580          ratio       = self._infodict["ENERGY"]["Ratio"]    
- 581           
- 582          # 2. init and set up pattern 
- 583          # FIXME - Only accept XYSigma format 
- 584          self.temp_pattern = MS.initCWXrayPattern(dfname=datafile, parser=PS.XYSigmaParser(),  
- 585                  wavelength=wavelength, wavelength2=wavelength2, ratio=ratio) 
- 586          self.temp_pattern.setInstrument(self) 
- 587       
- 588          # 3. generate Rietveld comonent 
- 589          comp = ConstWavelengthInstrument.genRietveldComponent(self, datafile, backgroundtuple,  
- 590                  measurerange, excludedregionslist, structure, myfit) 
- 591   
- 592          return comp 
-
         593   
- 594   
-
         595 -    def genMeasurement(self, refinebankidlist, datafilenamedict, userrangedict, 
- 596              userexcludedregiondict, bgpointsdict): 
-
         597          """ Generate a Measurement from X-ray instrument 
- 598          Using the same as srrietveld-refine.py 
- 599            Step-1 generate XML files 
- 600            Step-2 read XML file and generate the measurement including 
- 601                   a) data file name, b) user-defined refinement range (3) user defined  
- 602                   excluded region, (4) user-provided background points 
- 603          The bank-ID is 0 for instrument that does not have setup of bank 
- 604   
- 605          Arguement: 
- 606            refinebankidlist  : list, of int 
- 607            datafilenamedict  : dict.  key = int (bank ID), val = str (file name) 
- 608            userrangedict     : dict.  key = int (bank ID), val = 2-tuple (begin, end) 
- 609            userexcludedregiondict: dict.  key = int (bank ID), val = 2-tuple (begin, end) 
- 610            bgpointsdict      : dict.  key = int (bank ID), val = list of 2-tuple 
- 611   
- 612          Return          :   list, of list of Measurement instance 
- 613          """ 
- 614          # FIXME - This is the (partial) clone of genMeasurement() in srrietveld-refine 
- 615   
- 616          ConstWavelengthInstrument.genMeasurement(self, refinebankidlist, datafilenamedict,  
- 617                  userrangedict, userexcludedregiondict, bgpointsdict) 
- 618   
- 619          xmlfname = "tempmeasure.xml" 
- 620   
- 621          # 1. Generate measurement XML file 
- 622          measurexmlgen = XMLG.XrayInstrumentMeasurementXMLGenerator(datafilenamedict[0], 
- 623                  bgpointsdict[0], nouncertaintyoutput = True) 
- 624          measurexmlgen.exportXML(xmlfname) 
- 625   
- 626          # 2. generate measurement from XML 
- 627          expmeasurelist = XMLI.MeasurementXMLParser( [xmlfname] ).getMeasurements() 
- 628   
- 629          return expmeasurelist 
-
         630   
- 631   
-
         632 -class NeutronCWInstrument(ConstWavelengthInstrument): 
-
         633      """ 
- 634      Constrant wave X-ray diffractometer 
- 635      """ 
-
         636 -    def __init__(self, wavelength=None, resolution=None, peakprofiledict=None, name="Xray Diffractometer",  
- 637              wavelength2=None, ratio=0.0, backgroundinfodict=None): 
-
         638          """ 
- 639          initialization 
- 640   
- 641          Arguement: 
- 642          - peakprofiledict   :   dictionary, information and parameters of profile 
- 643          """ 
- 644          # 1. Call base class 
- 645          ConstWavelengthInstrument.__init__(self, wavelength, resolution, peakprofiledict,  
- 646                  name, wavelength2, ratio, backgroundinfodict) 
- 647   
- 648          self._Type = "NeutronCW" 
- 649          
- 650          # 2. Set background 
- 651          try: 
- 652              # User given 
- 653              if self._infodict["BACKGROUND"]["Type"][0].lower() == "p": 
- 654                  self._backgroundType = "Polynomial" 
- 655              else: 
- 656                  self._backgroundType = "Interpolated" 
- 657          except KeyError, err: 
- 658              # Default 
- 659              self._backgroundType = "Polynomial" 
- 660           
- 661          if not self._infodict.has_key("BACKGROUND"): 
- 662              self._infodict["BACKGROUND"] = {} 
- 663          self._infodict["BACKGROUND"]["Type"]  = self._backgroundType 
- 664   
- 665          return 
-
         666   
- 667   
-
         668 -    def __str__(self): 
-
         669          """ 
- 670          Customized format output 
- 671   
- 672          Return  :   str 
- 673          """ 
- 674          rstring  = ConstWavelengthInstrument.__str__(self) 
- 675          rstring += "Instrument Type: Neutron Constant Wave" 
- 676   
- 677          return rstring 
-
         678   
- 679   
-
         680 -    def genRietveldComponent(self, datafile, backgroundtuple, measurerange,  
- 681              excludedregionslist, structure, myfit=None, bankno=-1): 
-
         682          """ generate and optionally add a RietveldComponenet to a Fit instance 
- 683          in a Neutron constant wave length instrument 
- 684   
- 685          Argument: 
- 686          ...  
- 687          ... 
- 688   
- 689          Return  :   ... ... 
- 690          """ 
- 691          import midscript as MS 
- 692          PS = myEngine.getRietveldEngineModule("patternparsers") 
- 693   
- 694          # 1. Obtain required information from info-dict 
- 695          wavelength  = self._infodict["ENERGY"]["Lambda"] 
- 696          wavelength2 = self._infodict["ENERGY"]["Lambda2"]       
- 697          ratio       = self._infodict["ENERGY"]["Ratio"]    
- 698           
- 699          # 2. init and set up pattern 
- 700          self.temp_pattern = MS.initCWNeutronPattern(dfname=datafile, parser=PS.XYSigmaParser(),  
- 701                  wavelength=wavelength, wavelength2=wavelength2, ratio=ratio) 
- 702          self.temp_pattern.setInstrument(self) 
- 703   
- 704          # 3. Inspect background 
- 705          if backgroundtuple is None: 
- 706              backgrounddict = self._infodict["BACKGROUND"] 
- 707          else: 
- 708              backgrounddict = backgroundtuple 
- 709   
- 710          # 4. generate Rietveld comonent 
- 711          comp = ConstWavelengthInstrument.genRietveldComponent(self, datafile, backgrounddict,  
- 712                  measurerange, excludedregionslist, structure, myfit) 
- 713   
- 714          return comp 
-
         715   
- 716   
-
         717 -    def genMeasurement(self, datafilename="fakedata.dat"): 
-
         718          """ 
- 719          Generate a Measurement from this instrument 
- 720   
- 721          Arguement: 
- 722          - datafilename  :   str 
- 723   
- 724          Return          :   Measurement instance 
- 725          """ 
- 726          import measurements as MM 
- 727          import diffpy.srrietveld.datafileconverter as SDV 
- 728   
- 729          errmsg = "Refer to the style in TOFInstrument" 
- 730          raise NotImplementedError, errmsg 
- 731   
- 732          measurement = MM.Measurement() 
- 733   
- 734          # 1. Set data file 
- 735          measurement.setDataFileName(datafilename) 
- 736   
- 737          # 2. Parse data file 
- 738          # FIXME   Only RAPDF/XYSigma data can be used! 
- 739          p = SDV.RAPDFDataParser(datafilename) 
- 740          xs, ys, ss = p.getData() 
- 741          thmin = xs[0] 
- 742          thmax = xs[-1] 
- 743          measurement.setMeasureRange( (thmin, thmax) ) 
- 744   
- 745          return [measurement] 
-
         746   
- 747   
-
         748 -class TOFInstrument(Instrument): 
-
         749      """ 
- 750      General Time-of-flight (TOF) instrument 
- 751      """ 
- 752   
-
         753 -    def __init__(self, name="TOF", backgroundtype="Polynomial", peakprofiletype=None): 
-
         754          """ 
- 755          initialization 
- 756   
- 757          Argument: 
- 758          name            :   string 
- 759          backgroundtype  :   string 
- 760          peakprofiletype :   string 
- 761          """ 
- 762          Instrument.__init__(self, name) 
- 763           
- 764          self._Type = "TOF" 
- 765          self._name = name 
- 766   
- 767          self._peakprofiletype = peakprofiletype 
- 768          self._backgroundtype  = backgroundtype 
- 769          self._bankinfodict    = {} 
- 770   
- 771          return 
-
         772   
- 773       
-
         774 -    def __str__(self): 
-
         775          """ 
- 776          Customized output 
- 777          """ 
- 778          rstr = "" 
- 779          bankidlist = sorted(self._bankinfodict.keys()) 
- 780          for bankid in bankidlist: 
- 781              rstr += "Bank %-5s\n"% (bankid) 
- 782              dictkey = [] 
- 783              for key in sorted(self._bankinfodict[bankid].keys()): 
- 784                  val = self._bankinfodict[bankid][key] 
- 785                  if isinstance(val, dict): 
- 786                      dictkey.append(key) 
- 787                  else: 
- 788                      rstr += "  %-15s   %-15s\n"% (key, val) 
- 789   
- 790              for key in sorted(dictkey): 
- 791                  rstr += "Sub Dict:  %-15s\n"% (key) 
- 792                  for parname in self._bankinfodict[bankid][key].keys(): 
- 793                      rstr += "  %-15s   %-15s\n"% (parname, self._bankinfodict[bankid][key][parname]) 
- 794   
- 795          return rstr 
-
         796   
- 797   
-
         798 -    def getBankNumbersList(self): 
-
         799          """ 
- 800          Get the information of all the bank number 
- 801   
- 802          Return  :   list of int 
- 803          """ 
- 804          return self._bankinfodict.keys() 
-
         805   
- 806   
-
         807 -    def getBankInfoDict(self, bankno): 
-
         808          """ 
- 809          Get the dictionary decribing the characteristic of a specific bank 
- 810   
- 811          Argument: 
- 812          - bankno    :   int 
- 813   
- 814          Return      :   dict 
- 815          """ 
- 816          return self._bankinfodict[bankno] 
-
         817   
- 818   
-
         819 -    def getExcludedRegions(self, bankid): 
-
         820          """ 
- 821          Return all the excluded region of a specific bank 
- 822   
- 823          Argument: 
- 824          - bankid    :   int 
- 825   
- 826          Return  :   None 
- 827          """ 
- 828          return self._bankinfodict[bankid]["ExcludedRegions"] 
-
         829   
- 830   
-
         831 -    def genFileParser(self, bankid): 
-
         832          """ 
- 833          Generate file parser 
- 834   
- 835          Return  :   Parser 
- 836          """ 
- 837          PS = myEngine.getRietveldEngineModule("patternparsers") 
- 838   
- 839          if self._name == "GEM": 
- 840              parser = PS.GSSParser(bankid) 
- 841          else: 
- 842              parser = PS.XYSigmaParser() 
- 843   
- 844          return parser 
-
         845   
- 846   
-
         847 -    def setBankInfo(self, bankid, dtt1, dtt2, twothetabank, xcross, width, range=None,  
- 848              excludedregions=None, peakprofile=None, expdecay=None, backgroundinfo=None): 
-
         849          """ TOF Instrument's setup is specific to each bank; 
- 850          Every bank should be set up individually 
- 851   
- 852          Arguments: 
- 853          - bankno            :   int, bank number, 0 stand for integration from all banks 
- 854          - dtt1              :   float 
- 855          - dtt2              :   float 
- 856          - twothetabank      :   float 
- 857          - xcross            :   float 
- 858          - width             :   float 
- 859          - range             :   3-tuple of float, thmin, thmax, resolution 
- 860          - excluededregions  :   list of 2-tuples 
- 861          - peakprofiles      :   dictionary to set peak profiles 
- 862          - expdecay          :   dict, set up exponential decay 
- 863          """ 
- 864          self._bankinfodict[bankid] = {} 
- 865          self._bankinfodict[bankid]["Bank"]                      = bankid 
- 866   
- 867          # 1. Geometry 
- 868          self._bankinfodict[bankid]["GEOMETRY"] = {} 
- 869          self._bankinfodict[bankid]["GEOMETRY"]["TwoThetaBank"]  = twothetabank 
- 870          self._bankinfodict[bankid]["GEOMETRY"]["Dtt1"]          = dtt1             
- 871          self._bankinfodict[bankid]["GEOMETRY"]["Dtt2"]          = dtt2             
- 872          self._bankinfodict[bankid]["GEOMETRY"]["Width"]         = width            
- 873          self._bankinfodict[bankid]["GEOMETRY"]["Xcross"]        = xcross  
- 874   
- 875          # 2. Setup: Excluded Region 
- 876          self._bankinfodict[bankid]["SETUP"] = {} 
- 877          self._bankinfodict[bankid]["SETUP"]["EXCLUDEDREGION"] = [] 
- 878          if excludedregions is not None: 
- 879              for exregion in excludedregions: 
- 880                  begin = exregion[0] 
- 881                  end   = exregion[1] 
- 882                  exdict = {} 
- 883                  exdict["Begin"] = begin 
- 884                  exdict["End"]   = end 
- 885                  self._bankinfodict[bankid]["SETUP"]["EXCLUDEDREGION"].append(exdict)  
- 886          self._bankinfodict[bankid]["SETUP"]["RANGE"] = {} 
- 887          if range is not None: 
- 888              self._bankinfodict[bankid]["SETUP"]["RANGE"]["Min"] = range[0] 
- 889              self._bankinfodict[bankid]["SETUP"]["RANGE"]["Max"] = range[1] 
- 890              self._bankinfodict[bankid]["GEOMETRY"]["Resolution"] = range[2] 
- 891   
- 892          # 3. Background 
- 893          if backgroundinfo is None: 
- 894              # Polynomail as default 
- 895              self._bankinfodict[bankid]["BACKGROUND"] = {} 
- 896              self._bankinfodict[bankid]["BACKGROUND"]["Type" ] = "Polynomial" 
- 897              self._bankinfodict[bankid]["BACKGROUND"]["Order"] = 6 
- 898              self._bankinfodict[bankid]["BACKGROUND"]["Bkpos"] = 3000.00 
- 899              coeffstring = "" 
- 900              self._bankinfodict[bankid]["BACKGROUND"]["Coefficients"] = coeffstring 
- 901   
- 902          else: 
- 903              self._bankinfodict[bankid]["BACKGROUND"] = {} 
- 904              self._bankinfodict[bankid]["BACKGROUND"]["Type" ] = backgroundinfo["Type"] 
- 905              self._bankinfodict[bankid]["BACKGROUND"]["Order"] = backgroundinfo["Order"] 
- 906              self._bankinfodict[bankid]["BACKGROUND"]["Bkpos"] = backgroundinfo["Bkpos"] 
- 907              self._bankinfodict[bankid]["BACKGROUND"]["Points"] = backgroundinfo["Points"] 
- 908   
- 909          # LOOP-OVER:  for nindex in xrange(numcomp): 
- 910   
- 911          # 4. PeakProfile, Decay and Absorption 
- 912          if peakprofile is None: 
- 913              peakprofile = {} 
- 914           
- 915          if expdecay is None: 
- 916              expdecay = {} 
- 917   
- 918          self._bankinfodict[bankid]["PEAKPROFILE"] = peakprofile 
- 919          self._bankinfodict[bankid]["PEAKPROFILE"]["DECAY"] = expdecay 
- 920   
- 921          return 
-
         922   
- 923   
-
         924 -    def setZero(self, bankno=0, zshift=None, zerot=None): 
-
         925          """ 
- 926          Set zero-shift to a bank 
- 927   
- 928          Argument: 
- 929          - bankno    :   int 
- 930          - zshift    :   float 
- 931          - zerot     :   float 
- 932   
- 933          Return      :   None 
- 934          """ 
- 935          if zshift is not None: 
- 936              self._bankinfodict[bankno]["zshift"] = zshift 
- 937           
- 938          return 
-
         939   
- 940   
-
         941 -    def genRietveldComponent(self, myfit, structure, bankno, datafile, backgroundtuple = None,  
- 942              measurerange = None, excludedregionslist = None): 
-
         943          """ TOF Instrument: Generate and optionally add a RietveldComponenet to a Fit instance 
- 944          Only a SINGLE structure (multiple phase) can be set to a Rietveld Component 
- 945   
- 946          Argument: 
- 947          - myfit             :   Fit 
- 948          - structure         :   list of Phases 
- 949          - bankno            :   integer, bank number 
- 950          - datafile          :   str 
- 951          - backgroundtuple   :   2-tuple, (string, list of floats)  or (string, string) 
- 952                                  if string at position 0 is I, interpolated background coming from a file 
- 953                                  if string at position 0 is P, polynomial background 
- 954          - measurerange      :   2-tuple 
- 955          - excludedregionslist   :   list of 2-tuples 
- 956   
- 957          Return  :   Rietveld Component 
- 958          """ 
- 959          import midscript as MS 
- 960          REC = myEngine.getRietveldEngineModule("RietveldComponent") 
- 961   
- 962          # 1. generate component and add to Fit optionally 
- 963          comp = REC.RietveldComponent() 
- 964          if myfit is not None: 
- 965              myfit.addComponent(comp) 
- 966              myfit.setInstrument(myinstrument = self, bankid = bankno, component = comp) 
- 967   
- 968          # 2. Set pattern, background, range, resolution, and excluded regions 
- 969          #    FIXME  In this step, only XYSigma file is considered 
- 970          # 2.1 Set necessary information 
- 971          try: 
- 972              dangle          = self._bankinfodict[bankno]["GEOMETRY"]["TwoThetaBank"] 
- 973              dtt1            = self._bankinfodict[bankno]["GEOMETRY"]["Dtt1"] 
- 974              dtt2            = self._bankinfodict[bankno]["GEOMETRY"]["Dtt2"] 
- 975              width           = self._bankinfodict[bankno]["GEOMETRY"]["Width"] 
- 976              xcross          = self._bankinfodict[bankno]["GEOMETRY"]["Xcross"] 
- 977          except KeyError, err: 
- 978              errmsg  = "bankno = %-10s    Error: %-40s\n"% (bankno, err) 
- 979              errmsg += "Available Banks: %-30s\n"% (self._bankinfodict.keys()) 
- 980              errmsg += "Available Items: %-30s"% (self._bankinfodict[bankno].keys()) 
- 981              raise FitConfigurationError(errmsg) 
- 982   
- 983          if excludedregionslist is not None: 
- 984              self._bankinfodict[bankno]["SETUP"]["EXCLUDEDREGION"].extend(excludedregionslist) 
- 985          curexcludedregions = self._bankinfodict[bankno]["SETUP"]["EXCLUDEDREGION"] 
- 986   
- 987          myparser = self.genFileParser(bankno) 
- 988   
- 989          pattern = MS.initTOFPattern(datafile, parser=myparser, bank=bankno, dangle=dangle,\ 
- 990              dtt1=dtt1, dtt2=dtt2,  xcross=xcross, width=width, excludedregions=curexcludedregions)  
- 991          pattern.setInstrument(self) 
- 992   
- 993          # 2.2 set zero shift 
- 994          if self._bankinfodict[bankno]["GEOMETRY"].has_key("zshift"): 
- 995              pattern.setValue("zshift", self._bankinfodict[bankno]["GEOMETRY"]["zshift"]) 
- 996           
- 997          comp.setPattern(pattern)  
- 998   
- 999          # 3. Background: (from measurement overriding)  
-1000          if backgroundtuple is None: 
-1001              if self._bankinfodict[bankno].has_key("BACKGROUND"): 
-1002                  backgroundType   = self._bankinfodict[bankno]["BACKGROUND"]["Type"] 
-1003                  bkpos            = self._bankinfodict[bankno]["BACKGROUND"]["Bkpos"] 
-1004                  desireorder      = self._bankinfodict[bankno]["BACKGROUND"]["Order"] 
-1005                  backgroundPoints = [bkpos]             
-1006                  backgroundPoints.extend(self._bankinfodict[bankno]["BACKGROUND"]["Coefficients"]) 
-1007              else: 
-1008                  errmsg = "No Background Information Given:  %-20s"% (self._bankinfodict[bankno].keys()) 
-1009                  raise NotImplementedError(errmsg) 
-1010          else: 
-1011              backgroundType   = backgroundtuple[0] 
-1012              backgroundPoints = backgroundtuple[1] 
-1013              desireorder      = backgroundtuple[2] 
-1014          # END-IF-ELSE 
-1015   
-1016          backgroundType = backgroundType[0].upper() 
-1017          if  backgroundType == "I": 
-1018              background = MS.initInterpolatedBackground(backgroundPoints) 
-1019          elif backgroundType == "P": 
-1020              background = MS.initPolynomialBackground(backgroundPoints, desireorder) 
-1021          else: 
-1022              errmsg = "Background Type %-10s Is Not Supported" % (backgroundType) 
-1023              raise NotImplementedError, errmsg 
-1024          # END-IF-ELSE 
-1025   
-1026          comp.setBackground(background) 
-1027           
-1028          # 4. Measure Range: (from measurement overriding) 
-1029          if measurerange is not None: 
-1030              pattern.setMeasureRange(measurerange) 
-1031          else:    
-1032              thmin = self._bankinfodict[bankno]["Thmin"] 
-1033              thmax = self._bankinfodict[bankno]["Thmax"] 
-1034              pattern.setMeasureRange( (thmin, thmax) ) 
-1035              resol = self._bankinfodict[bankno]["Resolution"] 
-1036              pattern.setResolution(resol) 
-1037   
-1038          # 5. phase and peak profile 
-1039          for phase in structure: 
-1040              # 5.1 Add Phase  
-1041              numbanks = len(self._bankinfodict.keys()) 
-1042              if numbanks == 1: 
-1043                  phasecopy = phase 
-1044              else: 
-1045                  phasecopy = phase.multiBankDuplicate() 
-1046              comp.addPhase(phasecopy) 
-1047   
-1048              # 5.2 Add Peak and etc.  
-1049              if self._peakprofiletype is not None: 
-1050                  # FIXME This is remain from the previous prototype design, will be removed 
-1051                  peakprofile = MS.genPeakProfile(self._peakprofiletype, self._profileparamdict) 
-1052              else: 
-1053                  peakprofiledict = self._bankinfodict[bankno]["PEAKPROFILE"] 
-1054                  peakprofiledict["decay"] = peakprofiledict["DECAY"] 
-1055                  peakprofiletype = peakprofiledict["Type"] 
-1056                  peakprofile, expdecay, absorption = MS.genPeakProfile(peakprofiletype, peakprofiledict) 
-1057              # END-IF-ELSE 
-1058   
-1059              phasecopy.setPeakProfile(peakprofile) 
-1060              if absorption is not None: 
-1061                  phasecopy.setAbsorptionCorrection(absorption) 
-1062              if expdecay is not None: 
-1063                  phasecopy.addExpDecayFunction(expdecay) 
-1064          # LOOP-OVER 
-1065   
-1066          return comp 
-
        1067   
-1068   
-
        1069 -    def importFromFit(self, myfit): 
-
        1070          """ 
-1071          Import a RietvledAPI.Fit instance to give data to TOFInstrument 
-1072   
-1073          Arguments: 
-1074          - myfit     :   diffpy.rietveldapi.Fit instance 
-1075   
-1076          Return      :   None 
-1077          """ 
-1078          import diffpy.rietveldapi.backgrounds as APIBKGD 
-1079   
-1080          numcomp = myfit.getNumComponents() 
-1081          for nindex in xrange(numcomp): 
-1082              comp  = myfit.getComponent(nindex) 
-1083              pat   = comp.getPattern() 
-1084              phase = comp.getPhase(0)    # use first phase as type 
-1085              background = comp.getBackground() 
-1086              peakprofile = phase.getPeakProfile() 
-1087              expdecay    = phase.getExpDecayFunction() 
-1088              abscor      = phase.getAbsorptionCorrection() 
-1089   
-1090              # Init Bankno 
-1091              bankno = pat.getBankNumber() 
-1092              self._bankinfodict[bankno] = {} 
-1093              self._bankinfodict[bankno]["GEOMETRY"]   = {} 
-1094              self._bankinfodict[bankno]["SETUP"]      = {} 
-1095              self._bankinfodict[bankno]["BACKGROUND"] = {} 
-1096   
-1097              # Get Value Pertinent to Bank and Pattern 
-1098              # 1. Geometry, energy (resolution) 
-1099              dangle      = pat.getDetectorAngle() 
-1100              dtt1        = pat.getValue("dtt1")     
-1101              dtt2        = pat.getValue("dtt2")     
-1102              width       = pat.getValue("width")     
-1103              xcross      = pat.getValue("xcross")       
-1104              zshift      = pat.getValue("zshift") 
-1105              res         = pat.getResolution() 
-1106   
-1107              self._bankinfodict[bankno]["Bank"]          = bankno 
-1108              self._bankinfodict[bankno]["GEOMETRY"]["TwoThetaBank"]  = dangle           
-1109              self._bankinfodict[bankno]["GEOMETRY"]["Dtt1"]          = dtt1             
-1110              self._bankinfodict[bankno]["GEOMETRY"]["Dtt2"]          = dtt2             
-1111              self._bankinfodict[bankno]["GEOMETRY"]["Width"]         = width            
-1112              self._bankinfodict[bankno]["GEOMETRY"]["Xcross"]        = xcross  
-1113              self._bankinfodict[bankno]["GEOMETRY"]["zshift"]        = zshift 
-1114              self._bankinfodict[bankno]["GEOMETRY"]["Resolution"]    = res 
-1115   
-1116              # Excluded Region 
-1117              self._bankinfodict[bankno]["SETUP"]["EXCLUDEDREGION"] = [] 
-1118              for exregion in pat.getExcludedRegionsList(): 
-1119                  begin = exregion[0] 
-1120                  end   = exregion[1] 
-1121                  exdict = {} 
-1122                  exdict["Begin"] = begin 
-1123                  exdict["End"]   = end 
-1124                  self._bankinfodict[bankno]["SETUP"]["EXCLUDEDREGION"].append(exdict)  
-1125              self._bankinfodict[bankno]["SETUP"]["RANGE"] = {} 
-1126              range = pat.getMeasureRange() 
-1127              self._bankinfodict[bankno]["SETUP"]["RANGE"]["Min"] = range[0] 
-1128              self._bankinfodict[bankno]["SETUP"]["RANGE"]["Max"] = range[1] 
-1129   
-1130              # PeakProfile 
-1131              self._bankinfodict[bankno]["PEAKPROFILE"] = self.importRietveldObject(peakprofile) 
-1132              self._bankinfodict[bankno]["PEAKPROFILE"]["DECAY"] = self.importRietveldObject(expdecay) 
-1133              self._bankinfodict[bankno]["PEAKPROFILE"]["ABSORPTION"] = self.importRietveldObject(abscor) 
-1134   
-1135              # Background 
-1136              if isinstance(background, APIBKGD.PolynomialBackground): 
-1137                  # Polynomail 
-1138                  self._bankinfodict[bankno]["BACKGROUND"] = {} 
-1139                  self._bankinfodict[bankno]["BACKGROUND"]["Type" ] = "Polynomial" 
-1140                  self._bankinfodict[bankno]["BACKGROUND"]["Order"] = str(background.getOrder()) 
-1141                  self._bankinfodict[bankno]["BACKGROUND"]["Bkpos"] = str(background.getOrigin()) 
-1142                  coeffstring = "" 
-1143                  starttowrite = False 
-1144                  for i in xrange(12): 
-1145                      parname = "b"+str(12-i) 
-1146                      parval  = background.getValue(parname) 
-1147                      # 1. turn the flag on for the 1st non-zero 
-1148                      if abs(parval) > 1.0E-8: 
-1149                          if starttowrite is False: 
-1150                              starttowrite = True 
-1151                      # 2. write on 
-1152                      if starttowrite is True: 
-1153                          coeffstring = str(parval) + "  " + coeffstring 
-1154                  # LOOP-OVER 
-1155                  self._bankinfodict[bankno]["BACKGROUND"]["Coefficients"] = coeffstring 
-1156   
-1157              else: 
-1158                  self._bankinfodict[bankno]["BACKGROUND"] = self.importRietveldObject(background) 
-1159   
-1160          # LOOP-OVER:  for nindex in xrange(numcomp): 
-1161   
-1162          return 
-
        1163   
-1164   
-
        1165 -    def genMeasurement(self, refinebankidlist, datafilenamedict, userrangedict, 
-1166              userexcludedregiondict, bgpointsdict): 
-
        1167          """ Generate a Measurement from this instrument 
-1168   
-1169          Using the same as srrietveld-refine.py 
-1170          (1) generate XML files 
-1171          (2) read XML file and generate the measurement 
-1172   
-1173          Arguement: 
-1174          - datafilename  :   str 
-1175          - bgpoints      :   list of floats 
-1176   
-1177          Return          :   list, of list of Measurement instance 
-1178          """ 
-1179          # FIXME - This is the clone of genMeasurement() in srrietveld-refine 
-1180   
-1181          xmlfname = "tempmeasure.xml" 
-1182   
-1183          # 1. Generate measurement XML file 
-1184          measurexmlgen = XMLG.NPDFMeasurementXMLGenerator(datafilenamedict, refinebankidlist,  
-1185                  userexcludedregiondict, userrangedict) 
-1186          measurexmlgen.exportXML(xmlfname) 
-1187   
-1188          # 2. generate measurement from XML 
-1189          expmeasurelist = XMLI.MeasurementXMLParser( [xmlfname] ).getMeasurements() 
-1190   
-1191          return expmeasurelist 
-
        1192   
-1193  # END Class: ThermalNeutronTOFInstrument(Instrument) 
-1194   
-1195   
-1196   
-
        1197 -class ThermalNeutronTOFInstrument(Instrument): 
-
        1198      """ 
-1199      General Thermal Neutron TOF instrument 
-1200      """ 
-1201   
-
        1202 -    def __init__(self, name="Thermal Neutron TOF", backgroundtype="Polynomial", peakprofiletype=None): 
-
        1203          """ 
-1204          initialization 
-1205   
-1206          Argument: 
-1207          name            :   string 
-1208          backgroundtype  :   string 
-1209          peakprofiletype :   string 
-1210          """ 
-1211          Instrument.__init__(self, name) 
-1212           
-1213          self._Type = "ThermalNeutronTOF" 
-1214   
-1215          self._peakprofiletype = peakprofiletype 
-1216          self._backgroundtype  = backgroundtype 
-1217          self._bankinfodict    = {} 
-1218   
-1219          return 
-
        1220   
-1221   
-
        1222 -    def getBankNumbersList(self): 
-
        1223          """ 
-1224          Get the information of all the bank number 
-1225   
-1226          Return  :   list of int 
-1227          """ 
-1228          return self._bankinfodict.keys() 
-
        1229   
-1230   
-
        1231 -    def getBankInfoDict(self, bankno): 
-
        1232          """ 
-1233          Get the dictionary decribing the characteristic of a specific bank 
-1234   
-1235          Argument: 
-1236          - bankno    :   int 
-1237   
-1238          Return      :   dict 
-1239          """ 
-1240          return self._bankinfodict[bankno] 
-
        1241   
-1242   
-
        1243 -    def setBankInfo(self, bankno, dtt1, dtt2, dtt1t, dtt2t, twothetabank, xcross, width, \ 
-1244                      range=None, excludedregions=None, peakprofile=None, backgroundinfo=None): 
-
        1245          """ 
-1246          Thermal Neutron TOF Instrument's setup is specific to each bank; 
-1247          Every bank should be set up individually 
-1248   
-1249          Arguments: 
-1250          - bankno            :   int, bank number, 0 stand for integration from all banks 
-1251          - dtt1              :   float 
-1252          - dtt2              :   float 
-1253          - dtt1t             :   float 
-1254          - dtt2t             :   float 
-1255          - twothetabank      :   float 
-1256          - xcross            :   float 
-1257          - width             :   float 
-1258          - range             :   3-tuple of float, thmin, thmax, resolution 
-1259          - excluededregions  :   list of 2-tuples 
-1260          - peakprofiles      :   dictionary to set peak profiles 
-1261          """ 
-1262          bankattrdict = {} 
-1263          bankattrdict["BankNo"]  = bankno 
-1264          bankattrdict["Dtt1"]    = dtt1 
-1265          bankattrdict["Dtt2"]    = dtt2 
-1266          bankattrdict["Dtt1t"]   = dtt1t 
-1267          bankattrdict["Dtt2t"]   = dtt2t 
-1268          bankattrdict["TwoThetaBank"] = twothetabank 
-1269          bankattrdict["Xcross"]  = xcross 
-1270          bankattrdict["Width"]   = width 
-1271   
-1272          if range is not None: 
-1273              thmin, thmax, resolution = range 
-1274              bankattrdict["Thmin"] = thmin 
-1275              bankattrdict["Thmax"] = thmax 
-1276              bankattrdict["Resolution"] = resolution 
-1277   
-1278          if excludedregions is not None: 
-1279              bankattrdict["ExcludedRegions"] = excludedregions 
-1280          else: 
-1281              bankattrdict["ExcludedRegions"] = [] 
-1282   
-1283          if peakprofile is not None: 
-1284              bankattrdict["PeakProfile"] = peakprofile 
-1285   
-1286          if backgroundinfo is not None: 
-1287              bankattrdict["Background"]  = backgroundinfo 
-1288   
-1289          # Warning Message 
-1290          if self._bankinfodict.has_key(bankno): 
-1291              errmsg = "Bank No. %-5s is Reset"% (bankno) 
-1292              print "Warning!  %-40s"% (errmsg) 
-1293   
-1294          self._bankinfodict[bankno] = bankattrdict 
-1295   
-1296          return 
-
        1297   
-1298   
-
        1299 -    def setZero(self, bankno=0, zshift=None, zerot=None): 
-
        1300          """ 
-1301          Set zero-shift to a bank 
-1302   
-1303          Argument: 
-1304          - bankno    :   int 
-1305          - zshift    :   float 
-1306          - zerot     :   float 
-1307   
-1308          Return      :   None 
-1309          """ 
-1310          if zshift is not None: 
-1311              self._bankinfodict[bankno]["zshift"] = zshift 
-1312           
-1313          if zerot is not None: 
-1314              self._bankinfodict[bankno]["zerot"] = zerot 
-1315   
-1316          return 
-
        1317   
-1318   
-
        1319 -    def genRietveldComponent(self, myfit, structure, bankno, datafile, backgroundtuple=None, measurerange=None, excludedregionslist=None): 
-
        1320          """ 
-1321          generate and optionally add a RietveldComponenet to a Fit instance 
-1322   
-1323          Virtual in ConstWavelengthInstrument 
-1324   
-1325          Argument: 
-1326          ...  
-1327          - bankno            :   integer, bank number 
-1328          - backgroundtuple   :   2-tuple, (string, list of floats)  or (string, string) 
-1329                                  if string at position 0 is I, interpolated background coming from a file 
-1330                                  if string at position 0 is P, polynomial background 
-1331   
-1332          Return  :   ... ... 
-1333          """ 
-1334          import midscript                            as MS 
-1335          REComponent = myEngine.getRietveldEngineModule("RietveldComponent") 
-1336          PS = myEngine.getRietveldEngineModule("patternparsers") 
-1337   
-1338          # 1. generate component and add to Fit optionally 
-1339          comp = REComponent() 
-1340          if myfit is not None: 
-1341              myfit.addComponent(comp) 
-1342   
-1343          # 2. Set pattern, background, range, resolution, and excluded regions 
-1344          #    FIXME  In this step, only XYSigma file is considered 
-1345          # 2.1 Set necessary information 
-1346          try: 
-1347              dangle          = self._bankinfodict[bankno]["TwoThetaBank"] 
-1348              dtt1            = self._bankinfodict[bankno]["Dtt1"] 
-1349              dtt2            = self._bankinfodict[bankno]["Dtt2"] 
-1350              dtt1t           = self._bankinfodict[bankno]["Dtt1t"] 
-1351              dtt2t           = self._bankinfodict[bankno]["Dtt2t"] 
-1352              width           = self._bankinfodict[bankno]["Width"] 
-1353              xcross          = self._bankinfodict[bankno]["Xcross"] 
-1354          except KeyError, err: 
-1355              print "bankno = %-10s"% (bankno) 
-1356              print "Available Banks: %-30s"% (self._bankinfodict.keys()) 
-1357              print "Available Items: %-30s"% (self._bankinfodict[bankno].keys()) 
-1358              raise KeyError, err 
-1359   
-1360          if excludedregionslist is not None: 
-1361              self._bankinfodict[bankno]["ExcludedRegions"].extend(excludedregionslist) 
-1362          curexcludedregions = self._bankinfodict[bankno]["ExcludedRegions"] 
-1363   
-1364          pattern = MS.initThermalTOFPattern(datafile, parser=PS.XYSigmaParser(), bank=bankno, dangle=dangle,\ 
-1365              dtt1=dtt1, dtt2=dtt2, dtt1t=dtt1t, dtt2t=dtt2t, xcross=xcross, width=width, \ 
-1366              excludedregions=curexcludedregions)  
-1367          pattern.setInstrument(self) 
-1368   
-1369          # 2.2 set zero shift 
-1370          if self._bankinfodict[bankno].has_key("zshift"): 
-1371              pattern.setValue("zshift", self._bankinfodict[bankno]["zshift"]) 
-1372          if self._bankinfodict[bankno].has_key("zerot"): 
-1373              pattern.setValue("zerot", self._bankinfodict[bankno]["zerot"]) 
-1374           
-1375          comp.setPattern(pattern)  
-1376   
-1377          # 3. Background: (from measurement overriding)  
-1378          if backgroundtuple is None: 
-1379              if self._bankinfodict[bankno].has_key("Background"): 
-1380                  backgroundType   = self._bankinfodict[bankno]["Background"]["Type"] 
-1381                  bkpos            = self._bankinfodict[bankno]["Background"]["Bkpos"] 
-1382                  desireorder      = self._bankinfodict[bankno]["Background"]["Order"] 
-1383                  backgroundPoints = [bkpos]             
-1384                  backgroundPoints.extend(self._bankinfodict[bankno]["Background"]["Points"]) 
-1385              else: 
-1386                  pass  
-1387          else: 
-1388              backgroundType   = backgroundtuple[0] 
-1389              backgroundPoints = backgroundtuple[1] 
-1390              desireorder      = backgroundtuple[2] 
-1391   
-1392          if  backgroundType == "I": 
-1393              background = MS.initInterpolatedBackground(backgroundpoints) 
-1394          elif backgroundType == "P": 
-1395              background = MS.initPolynomialBackground(backgroundPoints, desireorder) 
-1396   
-1397          comp.setBackground(background) 
-1398           
-1399          # 4. Measure Range: (from measurement overriding) 
-1400          if measurerange is not None: 
-1401              pattern.setMeasureRange(measurerange) 
-1402          else:    
-1403              thmin = self._bankinfodict[bankno]["Thmin"] 
-1404              thmax = self._bankinfodict[bankno]["Thmax"] 
-1405              pattern.setMeasureRange( (thmin, thmax) ) 
-1406              resol = self._bankinfodict[bankno]["Resolution"] 
-1407              pattern.setResolution(resol) 
-1408   
-1409          # 5. phase and peak profile 
-1410          for phase in model: 
-1411              # 5.1 Add Phase  
-1412              comp.addPhase(phase) 
-1413   
-1414              # 5.2 Add Peak and etc.  
-1415              if self._peakprofiletype is not None: 
-1416                  # FIXME This is remain from the previous prototype design, will be removed 
-1417                  peakprofile = MS.genPeakProfile(self._peakprofiletype, self._profileparamdict) 
-1418              else: 
-1419                  peakprofiledict = self._bankinfodict[bankno]["PeakProfile"] 
-1420                  peakprofiletype = peakprofiledict["Type"] 
-1421                  peakprofile, expdecay, absorption = MS.genPeakProfile(peakprofiletype, peakprofiledict) 
-1422   
-1423              phase.setPeakProfile(peakprofile) 
-1424              phase.setAbsorptionCorrection(absorption) 
-1425              phase.addExpDecayFunction(expdecay) 
-1426   
-1427          return comp 
-
        1428   
-1429   
-
        1430 -    def importFromFit(self, myfit): 
-
        1431          """ 
-1432          Import a RietvledAPI.Fit instance to give data to this Instrument object 
-1433   
-1434          Arguments: 
-1435          - myfit     :   diffpy.rietveldapi.Fit instance 
-1436   
-1437          Return      :   None 
-1438          """ 
-1439          import diffpy.rietveldapi.backgrounds as APIBKGD 
-1440   
-1441          numcomp = myfit.getNumComponents() 
-1442          for nindex in xrange(numcomp): 
-1443              comp  = myfit.getComponent(nindex) 
-1444              pat   = comp.getPattern() 
-1445              phase = comp.getPhase(0)    # use first phase as type 
-1446              background = comp.getBackground() 
-1447              peakprofile = phase.getPeakProfile() 
-1448              expdecay    = phase.getExpDecayFunction() 
-1449              abscor      = phase.getAbsorptionCorrection() 
-1450   
-1451              # Init Bankno 
-1452              bankno = pat.getBankNumber() 
-1453              self._bankinfodict[bankno] = {} 
-1454   
-1455              # Get Value Pertinent to Bank and Pattern 
-1456              dangle      = pat.getDetectorAngle() 
-1457              dtt1        = pat.getValue("dtt1")     
-1458              dtt2        = pat.getValue("dtt2")     
-1459              dtt1t       = pat.getValue("dtt1t")     
-1460              dtt2t       = pat.getValue("dtt2t")     
-1461              width       = pat.getValue("width")     
-1462              xcross      = pat.getValue("xcross")       
-1463              zshift      = pat.getValue("zshift") 
-1464              zerot       = pat.getValue("zerot") 
-1465   
-1466              self._bankinfodict[bankno]["Bank"]          = bankno 
-1467              self._bankinfodict[bankno]["TwoThetaBank"]  = dangle           
-1468              self._bankinfodict[bankno]["Dtt1"]          = dtt1             
-1469              self._bankinfodict[bankno]["Dtt2"]          = dtt2             
-1470              self._bankinfodict[bankno]["Dtt1t"]         = dtt1t            
-1471              self._bankinfodict[bankno]["Dtt2t"]         = dtt2t            
-1472              self._bankinfodict[bankno]["Width"]         = width            
-1473              self._bankinfodict[bankno]["Xcross"]        = xcross  
-1474              self._bankinfodict[bankno]["zshift"]        = zshift 
-1475              self._bankinfodict[bankno]["zerot"]         = zerot 
-1476   
-1477              # Range and resolution 
-1478              st, ed = pat.getMeasureRange() 
-1479              res    = pat.getResolution() 
-1480              rangedict = {} 
-1481              rangedict["Thmin"] = st 
-1482              rangedict["Thmax"] = ed 
-1483              rangedict["Resolution"] = res 
-1484              self._bankinfodict[bankno]["RANGE"] = rangedict 
-1485   
-1486              # Excluded Region 
-1487              self._bankinfodict[bankno]["EXCLUDEDREGION"] = [] 
-1488              for exregion in pat.getExcludedRegionsList(): 
-1489                  exdict = {} 
-1490                  exdict["Start"] = exregion[0] 
-1491                  exdict["End"]   = exregion[1] 
-1492                  self._bankinfodict[bankno]["EXCLUDEDREGION"].append(exdict) 
-1493   
-1494              # PeakProfile 
-1495              self._bankinfodict[bankno]["PEAKPROFILE"] = self.importRietveldObject(peakprofile) 
-1496              self._bankinfodict[bankno]["PEAKPROFILE"]["DECAY"] = self.importRietveldObject(expdecay) 
-1497              self._bankinfodict[bankno]["PEAKPROFILE"]["ABSORPTION"] = self.importRietveldObject(abscor) 
-1498               
-1499   
-1500              # Background 
-1501              if isinstance(background, APIBKGD.PolynomialBackground): 
-1502                  # Polynomail 
-1503                  self._bankinfodict[bankno]["BACKGROUND"] = {} 
-1504                  self._bankinfodict[bankno]["BACKGROUND"]["Type" ] = "Polynomial" 
-1505                  self._bankinfodict[bankno]["BACKGROUND"]["Order"] = str(background.getOrder()) 
-1506                  self._bankinfodict[bankno]["BACKGROUND"]["Bkpos"] = str(background.getOrigin()) 
-1507                  coeffstring = "" 
-1508                  starttowrite = False 
-1509                  for i in xrange(12): 
-1510                      parname = "b"+str(12-i) 
-1511                      parval  = background.getValue(parname) 
-1512                      # 1. turn the flag on for the 1st non-zero 
-1513                      if abs(parval) > 1.0E-8: 
-1514                          if starttowrite is False: 
-1515                              starttowrite = True 
-1516                      # 2. write on 
-1517                      if starttowrite is True: 
-1518                          coeffstring = str(parval) + "  " + coeffstring 
-1519                  # LOOP-OVER 
-1520   
-1521                  self._bankinfodict[bankno]["BACKGROUND"]["Coefficients"] = coeffstring 
-1522   
-1523              else: 
-1524                  self._bankinfodict[bankno]["BACKGROUND"] = self.importRietveldObject(background) 
-1525   
-1526          # LOOP-OVER:  for nindex in xrange(numcomp): 
-1527   
-1528          return 
-
        1529   
-1530   
-
        1531 -    def genMeasurement(self, datafilename="fakedata.dat"): 
-
        1532          """ 
-1533          Generate a Measurement from this instrument 
-1534   
-1535          Arguement: 
-1536          - datafilename  :   str 
-1537   
-1538          Return          :   Measurement instance 
-1539          """ 
-1540          import measurements as MM 
-1541   
-1542          measurement = MM.Measurement() 
-1543   
-1544          # Set bank number to 0:  bank combining all banks/detectors 
-1545          measurement.setBankNumber(0) 
-1546          measurement.setDataFileName(datafilename) 
-1547   
-1548          return [measurement] 
-
        1549   
-1550  # END Class: ThermalNeutronTOFInstrument(Instrument) 
-1551   
-1552   
-
        1553 -def getInstrument(instrumentName): 
-
        1554      """ 
-1555      initialize an extended Instrument instance by instrumentName 
-1556   
-1557      Arguement: 
-1558      instrumentName  :   string, name of an instrument 
-1559   
-1560      Return          :   Instrument instance 
-1561      """ 
-1562      for instrument in instrumentList: 
-1563          if instrument.Name == instrumentName: 
-1564              return instrument() 
-1565   
-1566      wmsg = "Instrument %-10s has not been implemented"% (instrumentName) 
-1567      print wmsg  
-1568      return None 
-
        1569   
-1570   
-
        1571 -def isPatternOneBank(thefit, thepat): 
-
        1572      """ 
-1573      Judge whether the given pattern is one of the banks in a multiple-bank  
-1574      diffractometer 
-1575   
-1576      Justification:  Diffraction data coming from the same instrument but different time 
-1577      will correspond to different Instrument instance in initial configuration 
-1578   
-1579      Argument: 
-1580      - thefit    :   Fit instance 
-1581      - thepat    :   Pattern instance 
-1582      """ 
-1583      thisinstrument = thepat.getInstrument() 
-1584      boolresult     = False 
-1585      selfexist      = False 
-1586      otherbankexist = False 
-1587   
-1588      numcomps = thefit.getNumComponents() 
-1589      if thisinstrument is not None: 
-1590          # if no instrument information, then it is a stand-alone pattern 
-1591          for nindex in xrange(numcomps): 
-1592              pattern = thefit.getComponent(nindex).getPattern() 
-1593              if pattern.__repr__() == thepat.__repr__(): 
-1594                  # self pattern must exist in thefit 
-1595                  selfexist = True 
-1596              elif pattern.getInstrument() == thisinstrument: 
-1597                  # other pattern with same instrument: see 'Justification' 
-1598                  otherbankexist = True 
-1599              # END-IF 
-1600          # LOOP-OVER 
-1601   
-1602      else: 
-1603          # No instrument setup 
-1604          if numcomps > 1: 
-1605              selfexist      = True 
-1606              otherbankexist = True 
-1607          # Checkk selfexist 
-1608          for nindex in xrange(numcomps): 
-1609              pattern = thefit.getComponent(nindex).getPattern() 
-1610              if pattern.__repr__() == thepat.__repr__(): 
-1611                  # self pattern must exist in thefit 
-1612                  selfexist = True 
-1613      # End-If-Else 
-1614   
-1615      if selfexist is False: 
-1616          errmsg = "Input Pattern is not belonged to input Fit" 
-1617          raise NotImplementedError(errmsg) 
-1618   
-1619      if otherbankexist is True: 
-1620          boolresult = True 
-1621   
-1622      return boolresult 
-
        1623   
-
        -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.instrument.ConstWavelengthInstrument-class.html b/static_root/doc/srrietveld/developers/srrietveld.instrument.ConstWavelengthInstrument-class.html deleted file mode 100644 index 4f7a4232..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.instrument.ConstWavelengthInstrument-class.html +++ /dev/null @@ -1,713 +0,0 @@ - - - - - srrietveld.instrument.ConstWavelengthInstrument - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module instrument :: - Class ConstWavelengthInstrument - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class ConstWavelengthInstrument

        source code

        -
        -Instrument --+
-             |
-            ConstWavelengthInstrument
-
        - -
        Known Subclasses:
        -
        - NeutronCWInstrument, - XrayInstrument -
        - -
        -
        -
-constant wavelength diffractometer, will be extended to
-(1) Xray
-(2) CWNeutron
-
-The infodict should be in the structure as:
-Instrument:  Name, Type, 
-  |
-  |--- ENERGY: Lambda, Lambda1, ... ...
-  |
-  |--- PEAKPROFIEL:  Type, U, V, W, ... ...
-  |
-  |--- SETUP (Experiement Setup): 
-  |       |
-  |       |--- EXCLUDEDREGION
-  |       |
-  |       |--- Fit Range
-  |
-  |--- BACKGROUND: Type, Coefficients, ... ..
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - wavelength, - resolution, - peakprofiledict, - name='Constant Wave Instrument', - wavelength2=None, - ratio=0.0, - backgroundinfodict=None)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - Customized format output        		 - source code - -
        - -
        -   - - - - - - -
        getWaveLength(self)
        - Return the wave-length        		 - source code - -
        - -
        -   - - - - - - -
        genRietveldComponent(self, - datafile, - backgrounddict, - measurerange, - excludedregionslist, - structure, - myfit, - bankno=-1)
        - CW Wavelengvth Instrument: Generate and optionally add a -RietveldComponenet to a Fit instance with extra-measurement information -An individual instrument can have one and only one structure - -Virtual in ConstWavelengthInstrument - -Argument: -...        		 - source code - -
        - -
        -   - - - - - - -
        addExcludedRegion(self, - begin, - end)
        - Add excluded region to Constant Wave Insturment setup...        		 - source code - -
        - -
        -   - - - - - - -
        getExcludedRegions(self)
        - Return all the excluded region        		 - source code - -
        - -
        -   - - - - - - -
        setZero(self, - zshift=None)
        - Set zero-shift for an Constant Wave Instrument (1-bank)...        		 - source code - -
        - -
        -   - - - - - - -
        importFromFit(self, - myfit)
        - Import a RietvledAPI.Fit instance to give data to this...        		 - source code - -
        - -
            Inherited from Instrument
        -   - - - - - - -
        genMeasurement(self, - refinebankidlist, - datafilenamedict, - userrangedict, - userexcludedregiondict, - bgpointsdict)
        - Generate a Measurement from from base-class Instrument...        		 - source code - -
        - -
        -   - - - - - - -
        getBackgroundType(self)
        - Give the type of the background        		 - source code - -
        - -
        -   - - - - - - -
        getName(self)
        - Give the name of the instrument        		 - source code - -
        - -
        -   - - - - - - -
        getType(self)
        - Give the type of the instrument        		 - source code - -
        - -
        -   - - - - - - -
        importRietveldObject(self, - rietobj)
        - Import a Rietveld object's parameters to a dictionary        		 - source code - -
        - -
        -   - - - - - - -
        setPeakProfileInfo(self, - parameterdict)
        - import some parameters to PeakProfile's parameter dictionary...        		 - source code - -
        - -
        -   - - - - - - -
        setPhase(self, - fit, - lattice, - atomlist)
        - set up a (single) phase model to each RietveldComponent in a Fit instance -including -1.        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - wavelength, - resolution, - peakprofiledict, - name='Constant Wave Instrument', - wavelength2=None, - ratio=0.0, - backgroundinfodict=None) -
        (Constructor) -

        -         		source code  -
        - -

        initialization

        - Argument: wavelength : float, main wavelength resolution : - float peakprofiledict : dictionary for peak profile type and - paraemeters name : string wavelength2 : 2nd beam's - wavelength ratio : float -
        -
        Overrides: - Instrument.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        __str__(self) -
        (Informal representation operator) -

        -         		source code  -
        - -

        Customized format output

        - Return : str -
        -
        Overrides: - Instrument.__str__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        getWaveLength(self) -

        -         		source code  -
        - -

        Return the wave-length

        - Return : float -
        -
        -
        -
        - -
        - -
        - - -
        -

        genRietveldComponent(self, - datafile, - backgrounddict, - measurerange, - excludedregionslist, - structure, - myfit, - bankno=-1) -

        -         		source code  -
        - - 
        -CW Wavelengvth Instrument: Generate and optionally add a 
-RietveldComponenet to a Fit instance with extra-measurement information
-An individual instrument can have one and only one structure 
-
-Virtual in ConstWavelengthInstrument
-
-Argument:
-... 
-- backgrounddict    :   dictionary for background information
-                        if string at position 0 is I, interpolated 
-                        background coming from a file
-                        if string at position 0 is P, polynomial 
-                        background
-
-Return              :   RietveldComponent object
-
-
        -
        -
        Overrides: - Instrument.genRietveldComponent -
        -
        -
        -
        - -
        - -
        - - -
        -

        addExcludedRegion(self, - begin, - end) -

        -         		source code  -
        - - 
        -
-Add excluded region to Constant Wave Insturment setup
-
-Argument:
-- begin :   float
-- end   :   float
-
-Return  :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getExcludedRegions(self) -

        -         		source code  -
        - -

        Return all the excluded region

        - Return : None -
        -
        -
        -
        - -
        - -
        - - -
        -

        setZero(self, - zshift=None) -

        -         		source code  -
        - - 
        -
-Set zero-shift for an Constant Wave Instrument (1-bank)
-
-Argument:
-- zshift    :   float
-
-Return      :   None
-
-
        -
        -
        Overrides: - Instrument.setZero -
        -
        -
        -
        - -
        - -
        - - -
        -

        importFromFit(self, - myfit) -

        -         		source code  -
        - - 
        -
-Import a RietvledAPI.Fit instance to give data to this
-Constant Wave Insturment
-
-Arguments:
-- myfit     :   diffpy.rietveldapi.Fit instance
-
-Return      :   None
-
-
        -
        -
        Overrides: - Instrument.importFromFit -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:22 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.instrument.Instrument-class.html b/static_root/doc/srrietveld/developers/srrietveld.instrument.Instrument-class.html deleted file mode 100644 index f0aea893..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.instrument.Instrument-class.html +++ /dev/null @@ -1,627 +0,0 @@ - - - - - srrietveld.instrument.Instrument - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module instrument :: - Class Instrument - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class Instrument

        source code

        -
        Known Subclasses:
        -
        - ConstWavelengthInstrument, - TOFInstrument, - ThermalNeutronTOFInstrument -
        - -
        -base class for all Instrument-Specified refinement setup classes

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - name='Instrument')
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - Customized format output        		 - source code - -
        - -
        -   - - - - - - -
        getName(self)
        - Give the name of the instrument        		 - source code - -
        - -
        -   - - - - - - -
        getType(self)
        - Give the type of the instrument        		 - source code - -
        - -
        -   - - - - - - -
        getBackgroundType(self)
        - Give the type of the background        		 - source code - -
        - -
        -   - - - - - - -
        genRietveldComponent(self)
        - Generate and optionally add a RietveldComponenet to a Fit instance - of virtual/baseclass Instrument        		 - source code - -
        - -
        -   - - - - - - -
        setPhase(self, - fit, - lattice, - atomlist)
        - set up a (single) phase model to each RietveldComponent in a Fit instance -including -1.        		 - source code - -
        - -
        -   - - - - - - -
        setPeakProfileInfo(self, - parameterdict)
        - import some parameters to PeakProfile's parameter dictionary...        		 - source code - -
        - -
        -   - - - - - - -
        setZero(self, - zshift=None)
        - Set zero-shift...        		 - source code - -
        - -
        -   - - - - - - -
        importFromFit(self, - myfit)
        - Import a RietvledAPI.Fit instance to give data to this Instrument object...        		 - source code - -
        - -
        -   - - - - - - -
        importRietveldObject(self, - rietobj)
        - Import a Rietveld object's parameters to a dictionary        		 - source code - -
        - -
        -   - - - - - - -
        genMeasurement(self, - refinebankidlist, - datafilenamedict, - userrangedict, - userexcludedregiondict, - bgpointsdict)
        - Generate a Measurement from from base-class Instrument...        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __str__(self) -
        (Informal representation operator) -

        -         		source code  -
        - -

        Customized format output

        - Return : str -
        -
        -
        -
        - -
        - -
        - - -
        -

        getName(self) -

        -         		source code  -
        - -

        Give the name of the instrument

        - Return : str -
        -
        -
        -
        - -
        - -
        - - -
        -

        getType(self) -

        -         		source code  -
        - -

        Give the type of the instrument

        - Return : str -
        -
        -
        -
        - -
        - -
        - - -
        -

        getBackgroundType(self) -

        -         		source code  -
        - -

        Give the type of the background

        - Return : str -
        -
        -
        -
        - -
        - -
        - - -
        -

        setPhase(self, - fit, - lattice, - atomlist) -

        -         		source code  -
        - - 
        -
-set up a (single) phase model to each RietveldComponent in a Fit instance
-including
-1. Lattice
-2. Atoms
-3. (default) Peak profile (instrument dependent)
-
-Return  :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        setPeakProfileInfo(self, - parameterdict) -

        -         		source code  -
        - - 
        -
-import some parameters to PeakProfile's parameter dictionary
-
-Argument:
-- parameterdict :   dictionary key = parameter name, val = value
-
-Return          :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        setZero(self, - zshift=None) -

        -         		source code  -
        - - 
        -
-Set zero-shift
-
-Argument:
-- zshift    :   float
-
-Return      :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        importFromFit(self, - myfit) -

        -         		source code  -
        - - 
        -
-Import a RietvledAPI.Fit instance to give data to this Instrument object
-
-Virtual base class method
-
-Arguments:
-- myfit     :   diffpy.rietveldapi.Fit instance
-
-Return      :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        importRietveldObject(self, - rietobj) -

        -         		source code  -
        - -

        Import a Rietveld object's parameters to a dictionary

        - Return : dict -
        -
        -
        -
        - -
        - -
        - - -
        -

        genMeasurement(self, - refinebankidlist, - datafilenamedict, - userrangedict, - userexcludedregiondict, - bgpointsdict) -

        -         		source code  -
        - - 
        -Generate a Measurement from from base-class Instrument
-
-Arguement:
-- datafilename  :   str
-
-Return          :   Measurement instance
-
-
        -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:22 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.instrument.NeutronCWInstrument-class.html b/static_root/doc/srrietveld/developers/srrietveld.instrument.NeutronCWInstrument-class.html deleted file mode 100644 index 62811eef..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.instrument.NeutronCWInstrument-class.html +++ /dev/null @@ -1,566 +0,0 @@ - - - - - srrietveld.instrument.NeutronCWInstrument - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module instrument :: - Class NeutronCWInstrument - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class NeutronCWInstrument

        source code

        -
        -           Instrument --+    
-                        |    
-ConstWavelengthInstrument --+
-                            |
-                           NeutronCWInstrument
-
        - -
        -Constrant wave X-ray diffractometer

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - wavelength=None, - resolution=None, - peakprofiledict=None, - name='Xray Diffractometer', - wavelength2=None, - ratio=0.0, - backgroundinfodict=None)
        - initialization...        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - Customized format output        		 - source code - -
        - -
        -   - - - - - - -
        genRietveldComponent(self, - datafile, - backgroundtuple, - measurerange, - excludedregionslist, - structure, - myfit=None, - bankno=-1)
        - generate and optionally add a RietveldComponenet to a Fit instance - in a Neutron constant wave length instrument        		 - source code - -
        - -
        -   - - - - - - -
        genMeasurement(self, - datafilename='fakedata.dat')
        - Generate a Measurement from this instrument...        		 - source code - -
        - -
            Inherited from ConstWavelengthInstrument
        -   - - - - - - -
        addExcludedRegion(self, - begin, - end)
        - Add excluded region to Constant Wave Insturment setup...        		 - source code - -
        - -
        -   - - - - - - -
        getExcludedRegions(self)
        - Return all the excluded region        		 - source code - -
        - -
        -   - - - - - - -
        getWaveLength(self)
        - Return the wave-length        		 - source code - -
        - -
        -   - - - - - - -
        importFromFit(self, - myfit)
        - Import a RietvledAPI.Fit instance to give data to this...        		 - source code - -
        - -
        -   - - - - - - -
        setZero(self, - zshift=None)
        - Set zero-shift for an Constant Wave Instrument (1-bank)...        		 - source code - -
        - -
            Inherited from Instrument
        -   - - - - - - -
        getBackgroundType(self)
        - Give the type of the background        		 - source code - -
        - -
        -   - - - - - - -
        getName(self)
        - Give the name of the instrument        		 - source code - -
        - -
        -   - - - - - - -
        getType(self)
        - Give the type of the instrument        		 - source code - -
        - -
        -   - - - - - - -
        importRietveldObject(self, - rietobj)
        - Import a Rietveld object's parameters to a dictionary        		 - source code - -
        - -
        -   - - - - - - -
        setPeakProfileInfo(self, - parameterdict)
        - import some parameters to PeakProfile's parameter dictionary...        		 - source code - -
        - -
        -   - - - - - - -
        setPhase(self, - fit, - lattice, - atomlist)
        - set up a (single) phase model to each RietveldComponent in a Fit instance -including -1.        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - wavelength=None, - resolution=None, - peakprofiledict=None, - name='Xray Diffractometer', - wavelength2=None, - ratio=0.0, - backgroundinfodict=None) -
        (Constructor) -

        -         		source code  -
        - - 
        -
-initialization
-
-Arguement:
-- peakprofiledict   :   dictionary, information and parameters of profile
-
-
        -
        -
        Overrides: - ConstWavelengthInstrument.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        __str__(self) -
        (Informal representation operator) -

        -         		source code  -
        - -

        Customized format output

        - Return : str -
        -
        Overrides: - ConstWavelengthInstrument.__str__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        genRietveldComponent(self, - datafile, - backgroundtuple, - measurerange, - excludedregionslist, - structure, - myfit=None, - bankno=-1) -

        -         		source code  -
        - -

        generate and optionally add a RietveldComponenet to a Fit instance in - a Neutron constant wave length instrument

        -

        Argument: ... ...

        - Return : ... ... -
        -
        Overrides: - ConstWavelengthInstrument.genRietveldComponent -
        -
        -
        -
        - -
        - -
        - - -
        -

        genMeasurement(self, - datafilename='fakedata.dat') -

        -         		source code  -
        - - 
        -
-Generate a Measurement from this instrument
-
-Arguement:
-- datafilename  :   str
-
-Return          :   Measurement instance
-
-
        -
        -
        Overrides: - Instrument.genMeasurement -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:22 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.instrument.TOFInstrument-class.html b/static_root/doc/srrietveld/developers/srrietveld.instrument.TOFInstrument-class.html deleted file mode 100644 index a7da108b..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.instrument.TOFInstrument-class.html +++ /dev/null @@ -1,833 +0,0 @@ - - - - - srrietveld.instrument.TOFInstrument - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module instrument :: - Class TOFInstrument - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class TOFInstrument

        source code

        -
        -Instrument --+
-             |
-            TOFInstrument
-
        - -
        -General Time-of-flight (TOF) instrument

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - name='TOF', - backgroundtype='Polynomial', - peakprofiletype=None)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - Customized output        		 - source code - -
        - -
        -   - - - - - - -
        getBankNumbersList(self)
        - Get the information of all the bank number        		 - source code - -
        - -
        -   - - - - - - -
        getBankInfoDict(self, - bankno)
        - Get the dictionary decribing the characteristic of a specific bank...        		 - source code - -
        - -
        -   - - - - - - -
        getExcludedRegions(self, - bankid)
        - Return all the excluded region of a specific bank...        		 - source code - -
        - -
        -   - - - - - - -
        genFileParser(self, - bankid)
        - Generate file parser        		 - source code - -
        - -
        -   - - - - - - -
        setBankInfo(self, - bankid, - dtt1, - dtt2, - twothetabank, - xcross, - width, - range=None, - excludedregions=None, - peakprofile=None, - expdecay=None, - backgroundinfo=None)
        - TOF Instrument's setup is specific to each bank;...        		 - source code - -
        - -
        -   - - - - - - -
        setZero(self, - bankno=0, - zshift=None, - zerot=None)
        - Set zero-shift to a bank...        		 - source code - -
        - -
        -   - - - - - - -
        genRietveldComponent(self, - myfit, - structure, - bankno, - datafile, - backgroundtuple=None, - measurerange=None, - excludedregionslist=None)
        - TOF Instrument: Generate and optionally add a RietveldComponenet to a Fit instance...        		 - source code - -
        - -
        -   - - - - - - -
        importFromFit(self, - myfit)
        - Import a RietvledAPI.Fit instance to give data to TOFInstrument...        		 - source code - -
        - -
        -   - - - - - - -
        genMeasurement(self, - refinebankidlist, - datafilenamedict, - userrangedict, - userexcludedregiondict, - bgpointsdict)
        - Generate a Measurement from this instrument...        		 - source code - -
        - -
            Inherited from Instrument
        -   - - - - - - -
        getBackgroundType(self)
        - Give the type of the background        		 - source code - -
        - -
        -   - - - - - - -
        getName(self)
        - Give the name of the instrument        		 - source code - -
        - -
        -   - - - - - - -
        getType(self)
        - Give the type of the instrument        		 - source code - -
        - -
        -   - - - - - - -
        importRietveldObject(self, - rietobj)
        - Import a Rietveld object's parameters to a dictionary        		 - source code - -
        - -
        -   - - - - - - -
        setPeakProfileInfo(self, - parameterdict)
        - import some parameters to PeakProfile's parameter dictionary...        		 - source code - -
        - -
        -   - - - - - - -
        setPhase(self, - fit, - lattice, - atomlist)
        - set up a (single) phase model to each RietveldComponent in a Fit instance -including -1.        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - name='TOF', - backgroundtype='Polynomial', - peakprofiletype=None) -
        (Constructor) -

        -         		source code  -
        - -

        initialization

        - Argument: name : string backgroundtype : string - peakprofiletype : string -
        -
        Overrides: - Instrument.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        __str__(self) -
        (Informal representation operator) -

        -         		source code  -
        - - Customized output -
        -
        Overrides: - Instrument.__str__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        getBankNumbersList(self) -

        -         		source code  -
        - -

        Get the information of all the bank number

        - Return : list of int -
        -
        -
        -
        - -
        - -
        - - -
        -

        getBankInfoDict(self, - bankno) -

        -         		source code  -
        - - 
        -
-Get the dictionary decribing the characteristic of a specific bank
-
-Argument:
-- bankno    :   int
-
-Return      :   dict
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getExcludedRegions(self, - bankid) -

        -         		source code  -
        - - 
        -
-Return all the excluded region of a specific bank
-
-Argument:
-- bankid    :   int
-
-Return  :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        genFileParser(self, - bankid) -

        -         		source code  -
        - -

        Generate file parser

        - Return : Parser -
        -
        -
        -
        - -
        - -
        - - -
        -

        setBankInfo(self, - bankid, - dtt1, - dtt2, - twothetabank, - xcross, - width, - range=None, - excludedregions=None, - peakprofile=None, - expdecay=None, - backgroundinfo=None) -

        -         		source code  -
        - - 
        -TOF Instrument's setup is specific to each bank;
-Every bank should be set up individually
-
-Arguments:
-- bankno            :   int, bank number, 0 stand for integration from all banks
-- dtt1              :   float
-- dtt2              :   float
-- twothetabank      :   float
-- xcross            :   float
-- width             :   float
-- range             :   3-tuple of float, thmin, thmax, resolution
-- excluededregions  :   list of 2-tuples
-- peakprofiles      :   dictionary to set peak profiles
-- expdecay          :   dict, set up exponential decay
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        setZero(self, - bankno=0, - zshift=None, - zerot=None) -

        -         		source code  -
        - - 
        -
-Set zero-shift to a bank
-
-Argument:
-- bankno    :   int
-- zshift    :   float
-- zerot     :   float
-
-Return      :   None
-
-
        -
        -
        Overrides: - Instrument.setZero -
        -
        -
        -
        - -
        - -
        - - -
        -

        genRietveldComponent(self, - myfit, - structure, - bankno, - datafile, - backgroundtuple=None, - measurerange=None, - excludedregionslist=None) -

        -         		source code  -
        - - 
        -TOF Instrument: Generate and optionally add a RietveldComponenet to a Fit instance
-Only a SINGLE structure (multiple phase) can be set to a Rietveld Component
-
-Argument:
-- myfit             :   Fit
-- structure         :   list of Phases
-- bankno            :   integer, bank number
-- datafile          :   str
-- backgroundtuple   :   2-tuple, (string, list of floats)  or (string, string)
-                        if string at position 0 is I, interpolated background coming from a file
-                        if string at position 0 is P, polynomial background
-- measurerange      :   2-tuple
-- excludedregionslist   :   list of 2-tuples
-
-Return  :   Rietveld Component
-
-
        -
        -
        Overrides: - Instrument.genRietveldComponent -
        -
        -
        -
        - -
        - -
        - - -
        -

        importFromFit(self, - myfit) -

        -         		source code  -
        - - 
        -
-Import a RietvledAPI.Fit instance to give data to TOFInstrument
-
-Arguments:
-- myfit     :   diffpy.rietveldapi.Fit instance
-
-Return      :   None
-
-
        -
        -
        Overrides: - Instrument.importFromFit -
        -
        -
        -
        - -
        - -
        - - -
        -

        genMeasurement(self, - refinebankidlist, - datafilenamedict, - userrangedict, - userexcludedregiondict, - bgpointsdict) -

        -         		source code  -
        - - 
        -Generate a Measurement from this instrument
-
-Using the same as srrietveld-refine.py
-(1) generate XML files
-(2) read XML file and generate the measurement
-
-Arguement:
-- datafilename  :   str
-- bgpoints      :   list of floats
-
-Return          :   list, of list of Measurement instance
-
-
        -
        -
        Overrides: - Instrument.genMeasurement -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:22 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.instrument.ThermalNeutronTOFInstrument-class.html b/static_root/doc/srrietveld/developers/srrietveld.instrument.ThermalNeutronTOFInstrument-class.html deleted file mode 100644 index f53d0fb0..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.instrument.ThermalNeutronTOFInstrument-class.html +++ /dev/null @@ -1,719 +0,0 @@ - - - - - srrietveld.instrument.ThermalNeutronTOFInstrument - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module instrument :: - Class ThermalNeutronTOFInstrument - - - - - - -
        [hide private]
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        -
        - -

        Class ThermalNeutronTOFInstrument

        source code

        -
        -Instrument --+
-             |
-            ThermalNeutronTOFInstrument
-
        - -
        -General Thermal Neutron TOF instrument

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - name='Thermal Neutron TOF', - backgroundtype='Polynomial', - peakprofiletype=None)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        getBankNumbersList(self)
        - Get the information of all the bank number        		 - source code - -
        - -
        -   - - - - - - -
        getBankInfoDict(self, - bankno)
        - Get the dictionary decribing the characteristic of a specific bank...        		 - source code - -
        - -
        -   - - - - - - -
        setBankInfo(self, - bankno, - dtt1, - dtt2, - dtt1t, - dtt2t, - twothetabank, - xcross, - width, - range=None, - excludedregions=None, - peakprofile=None, - backgroundinfo=None)
        - Thermal Neutron TOF Instrument's setup is specific to each bank;...        		 - source code - -
        - -
        -   - - - - - - -
        setZero(self, - bankno=0, - zshift=None, - zerot=None)
        - Set zero-shift to a bank...        		 - source code - -
        - -
        -   - - - - - - -
        genRietveldComponent(self, - myfit, - structure, - bankno, - datafile, - backgroundtuple=None, - measurerange=None, - excludedregionslist=None)
        - generate and optionally add a RietveldComponenet to a Fit instance - -Virtual in ConstWavelengthInstrument - -Argument: -...        		 - source code - -
        - -
        -   - - - - - - -
        importFromFit(self, - myfit)
        - Import a RietvledAPI.Fit instance to give data to this Instrument object...        		 - source code - -
        - -
        -   - - - - - - -
        genMeasurement(self, - datafilename='fakedata.dat')
        - Generate a Measurement from this instrument...        		 - source code - -
        - -
            Inherited from Instrument
        -   - - - - - - -
        __str__(self)
        - Customized format output        		 - source code - -
        - -
        -   - - - - - - -
        getBackgroundType(self)
        - Give the type of the background        		 - source code - -
        - -
        -   - - - - - - -
        getName(self)
        - Give the name of the instrument        		 - source code - -
        - -
        -   - - - - - - -
        getType(self)
        - Give the type of the instrument        		 - source code - -
        - -
        -   - - - - - - -
        importRietveldObject(self, - rietobj)
        - Import a Rietveld object's parameters to a dictionary        		 - source code - -
        - -
        -   - - - - - - -
        setPeakProfileInfo(self, - parameterdict)
        - import some parameters to PeakProfile's parameter dictionary...        		 - source code - -
        - -
        -   - - - - - - -
        setPhase(self, - fit, - lattice, - atomlist)
        - set up a (single) phase model to each RietveldComponent in a Fit instance -including -1.        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - name='Thermal Neutron TOF', - backgroundtype='Polynomial', - peakprofiletype=None) -
        (Constructor) -

        -         		source code  -
        - -

        initialization

        - Argument: name : string backgroundtype : string - peakprofiletype : string -
        -
        Overrides: - Instrument.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        getBankNumbersList(self) -

        -         		source code  -
        - -

        Get the information of all the bank number

        - Return : list of int -
        -
        -
        -
        - -
        - -
        - - -
        -

        getBankInfoDict(self, - bankno) -

        -         		source code  -
        - - 
        -
-Get the dictionary decribing the characteristic of a specific bank
-
-Argument:
-- bankno    :   int
-
-Return      :   dict
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        setBankInfo(self, - bankno, - dtt1, - dtt2, - dtt1t, - dtt2t, - twothetabank, - xcross, - width, - range=None, - excludedregions=None, - peakprofile=None, - backgroundinfo=None) -

        -         		source code  -
        - - 
        -
-Thermal Neutron TOF Instrument's setup is specific to each bank;
-Every bank should be set up individually
-
-Arguments:
-- bankno            :   int, bank number, 0 stand for integration from all banks
-- dtt1              :   float
-- dtt2              :   float
-- dtt1t             :   float
-- dtt2t             :   float
-- twothetabank      :   float
-- xcross            :   float
-- width             :   float
-- range             :   3-tuple of float, thmin, thmax, resolution
-- excluededregions  :   list of 2-tuples
-- peakprofiles      :   dictionary to set peak profiles
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        setZero(self, - bankno=0, - zshift=None, - zerot=None) -

        -         		source code  -
        - - 
        -
-Set zero-shift to a bank
-
-Argument:
-- bankno    :   int
-- zshift    :   float
-- zerot     :   float
-
-Return      :   None
-
-
        -
        -
        Overrides: - Instrument.setZero -
        -
        -
        -
        - -
        - -
        - - -
        -

        genRietveldComponent(self, - myfit, - structure, - bankno, - datafile, - backgroundtuple=None, - measurerange=None, - excludedregionslist=None) -

        -         		source code  -
        - - 
        -
-generate and optionally add a RietveldComponenet to a Fit instance
-
-Virtual in ConstWavelengthInstrument
-
-Argument:
-... 
-- bankno            :   integer, bank number
-- backgroundtuple   :   2-tuple, (string, list of floats)  or (string, string)
-                        if string at position 0 is I, interpolated background coming from a file
-                        if string at position 0 is P, polynomial background
-
-Return  :   ... ...
-
-
        -
        -
        Overrides: - Instrument.genRietveldComponent -
        -
        -
        -
        - -
        - -
        - - -
        -

        importFromFit(self, - myfit) -

        -         		source code  -
        - - 
        -
-Import a RietvledAPI.Fit instance to give data to this Instrument object
-
-Arguments:
-- myfit     :   diffpy.rietveldapi.Fit instance
-
-Return      :   None
-
-
        -
        -
        Overrides: - Instrument.importFromFit -
        -
        -
        -
        - -
        - -
        - - -
        -

        genMeasurement(self, - datafilename='fakedata.dat') -

        -         		source code  -
        - - 
        -
-Generate a Measurement from this instrument
-
-Arguement:
-- datafilename  :   str
-
-Return          :   Measurement instance
-
-
        -
        -
        Overrides: - Instrument.genMeasurement -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:22 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.instrument.XrayInstrument-class.html b/static_root/doc/srrietveld/developers/srrietveld.instrument.XrayInstrument-class.html deleted file mode 100644 index ccac0101..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.instrument.XrayInstrument-class.html +++ /dev/null @@ -1,593 +0,0 @@ - - - - - srrietveld.instrument.XrayInstrument - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module instrument :: - Class XrayInstrument - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class XrayInstrument

        source code

        -
        -           Instrument --+    
-                        |    
-ConstWavelengthInstrument --+
-                            |
-                           XrayInstrument
-
        - -
        -Constrant wave X-ray diffractometer

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - wavelength=None, - resolution=None, - peakprofiledict=None, - name='Xray Diffractometer', - wavelength2=None, - ratio=0.0, - backgroundinfodict=None)
        - initialization...        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - Customized format output        		 - source code - -
        - -
        -   - - - - - - -
        genRietveldComponent(self, - datafile, - backgroundtuple, - measurerange, - excludedregionslist, - structure, - myfit=None, - bankno=-1)
        - Generate and optionally add a RietveldComponenet to a Fit instance - by an X-ray Instrument        		 - source code - -
        - -
        -   - - - - - - -
        genMeasurement(self, - refinebankidlist, - datafilenamedict, - userrangedict, - userexcludedregiondict, - bgpointsdict)
        - Generate a Measurement from X-ray instrument -Using the same as srrietveld-refine.py - Step-1 generate XML files - Step-2 read XML file and generate the measurement including - a) data file name, b) user-defined refinement range (3) user defined - excluded region, (4) user-provided background points -The bank-ID is 0 for instrument that does not have setup of bank - -Arguement: - refinebankidlist : list, of int - datafilenamedict : dict.        		 - source code - -
        - -
            Inherited from ConstWavelengthInstrument
        -   - - - - - - -
        addExcludedRegion(self, - begin, - end)
        - Add excluded region to Constant Wave Insturment setup...        		 - source code - -
        - -
        -   - - - - - - -
        getExcludedRegions(self)
        - Return all the excluded region        		 - source code - -
        - -
        -   - - - - - - -
        getWaveLength(self)
        - Return the wave-length        		 - source code - -
        - -
        -   - - - - - - -
        importFromFit(self, - myfit)
        - Import a RietvledAPI.Fit instance to give data to this...        		 - source code - -
        - -
        -   - - - - - - -
        setZero(self, - zshift=None)
        - Set zero-shift for an Constant Wave Instrument (1-bank)...        		 - source code - -
        - -
            Inherited from Instrument
        -   - - - - - - -
        getBackgroundType(self)
        - Give the type of the background        		 - source code - -
        - -
        -   - - - - - - -
        getName(self)
        - Give the name of the instrument        		 - source code - -
        - -
        -   - - - - - - -
        getType(self)
        - Give the type of the instrument        		 - source code - -
        - -
        -   - - - - - - -
        importRietveldObject(self, - rietobj)
        - Import a Rietveld object's parameters to a dictionary        		 - source code - -
        - -
        -   - - - - - - -
        setPeakProfileInfo(self, - parameterdict)
        - import some parameters to PeakProfile's parameter dictionary...        		 - source code - -
        - -
        -   - - - - - - -
        setPhase(self, - fit, - lattice, - atomlist)
        - set up a (single) phase model to each RietveldComponent in a Fit instance -including -1.        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - wavelength=None, - resolution=None, - peakprofiledict=None, - name='Xray Diffractometer', - wavelength2=None, - ratio=0.0, - backgroundinfodict=None) -
        (Constructor) -

        -         		source code  -
        - - 
        -
-initialization
-
-Arguement:
-- peakprofiledict   :   dictionary, information and parameters of profile
-
-
        -
        -
        Overrides: - ConstWavelengthInstrument.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        __str__(self) -
        (Informal representation operator) -

        -         		source code  -
        - -

        Customized format output

        - Return : str -
        -
        Overrides: - ConstWavelengthInstrument.__str__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        genRietveldComponent(self, - datafile, - backgroundtuple, - measurerange, - excludedregionslist, - structure, - myfit=None, - bankno=-1) -

        -         		source code  -
        - -

        Generate and optionally add a RietveldComponenet to a Fit instance by - an X-ray Instrument

        -

        Argument: ... ...

        - Return : ... ... -
        -
        Overrides: - ConstWavelengthInstrument.genRietveldComponent -
        -
        -
        -
        - -
        - -
        - - -
        -

        genMeasurement(self, - refinebankidlist, - datafilenamedict, - userrangedict, - userexcludedregiondict, - bgpointsdict) -

        -         		source code  -
        - - 
        -Generate a Measurement from X-ray instrument
-Using the same as srrietveld-refine.py
-  Step-1 generate XML files
-  Step-2 read XML file and generate the measurement including
-         a) data file name, b) user-defined refinement range (3) user defined 
-         excluded region, (4) user-provided background points
-The bank-ID is 0 for instrument that does not have setup of bank
-
-Arguement:
-  refinebankidlist  : list, of int
-  datafilenamedict  : dict.  key = int (bank ID), val = str (file name)
-  userrangedict     : dict.  key = int (bank ID), val = 2-tuple (begin, end)
-  userexcludedregiondict: dict.  key = int (bank ID), val = 2-tuple (begin, end)
-  bgpointsdict      : dict.  key = int (bank ID), val = list of 2-tuple
-
-Return          :   list, of list of Measurement instance
-
-
        -
        -
        Overrides: - Instrument.genMeasurement -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:22 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.io-module.html b/static_root/doc/srrietveld/developers/srrietveld.io-module.html deleted file mode 100644 index 5280fa79..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.io-module.html +++ /dev/null @@ -1,319 +0,0 @@ - - - - - srrietveld.io - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module io - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Module io

        source code

        -A collection of IO processing

        - - - - - - - - - - - - - - - - -
        - - - - - -
        Functions[hide private]
        -
        -   - - - - - - -
        getDataFromColumnFile(filename, - colstart, - colend, - output='tuple')
        - Reading a data file which containing 2 or 3 column of data in format:...        		 - source code - -
        - -
        -   - - - - - - -
        writeToColumnFile(datatupleset=None, - dataarrayset=None, - filename=None)
        - Write a list of tuples or list of arrays to a file...        		 - source code - -
        - -
        -   - - - - - - -
        listFileNamesInDirectory(directory)
        - Find all the files in a given directory...        		 - source code - -
        - -
        - - - - - - - - - -
        - - - - - -
        Variables[hide private]
        -
        -   - - __id__ = '$Id: io.py 2792 2009-03-02 15:56:43Z wdzhou $' -
        - - - - - - -
        - - - - - -
        Function Details[hide private]
        -
        - -
        - -
        - - -
        -

        getDataFromColumnFile(filename, - colstart, - colend, - output='tuple') -

        -         		source code  -
        - - 
        -
-Reading a data file which containing 2 or 3 column of data in format:
-X-Y-Sigma
-
-Argument:
-- filename  :   str, data file name
-- colstart  :   int
-- colend    :   int, colend > colstart
-- output    :   str, output option  tuple/numpy
-
-Return      :   list of n-list
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        writeToColumnFile(datatupleset=None, - dataarrayset=None, - filename=None) -

        -         		source code  -
        - - 
        -
-Write a list of tuples or list of arrays to a file
-
-Argument:
-- dataset   :   str
-- filename  :   str
-
-Return      :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        listFileNamesInDirectory(directory) -

        -         		source code  -
        - - 
        -
-Find all the files in a given directory
-
-Arguments:
-- directory :   str
-
-Return      :   list of str, as file names,
-                * without directory/path with file name
-
-
        -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
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        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:22 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.io-pysrc.html b/static_root/doc/srrietveld/developers/srrietveld.io-pysrc.html deleted file mode 100644 index 020c2132..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.io-pysrc.html +++ /dev/null @@ -1,319 +0,0 @@ - - - - - srrietveld.io - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module io - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        -

        Source Code for Module srrietveld.io

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2008 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Wenduo Zhou 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14  """ 
- 15    A collection of IO processing 
- 16  """ 
- 17   
- 18  __id__ = "$Id: io.py 2792 2009-03-02 15:56:43Z wdzhou $" 
- 19   
-
         20 -def getDataFromColumnFile(filename, colstart, colend, output="tuple"): 
-
         21      """ 
- 22      Reading a data file which containing 2 or 3 column of data in format: 
- 23      X-Y-Sigma 
- 24   
- 25      Argument: 
- 26      - filename  :   str, data file name 
- 27      - colstart  :   int 
- 28      - colend    :   int, colend > colstart 
- 29      - output    :   str, output option  tuple/numpy 
- 30   
- 31      Return      :   list of n-list 
- 32      """ 
- 33      # 1. read data file 
- 34      ifile = open(filename, "r") 
- 35      lines   = ifile.readlines() 
- 36      ifile.close() 
- 37   
- 38      # 2. import 
- 39      if output == "tuple": 
- 40          dataset = [] 
- 41          opmode = 0 
- 42   
- 43      elif output == "numpy": 
- 44          import numpy 
- 45          coldatalist = [] 
- 46          for i in xrange(colstart, colend+1): 
- 47              coldatalist.append( [] ) 
- 48          opmode = 1 
- 49   
- 50      else: 
- 51          errmsg = "option %-10s unknown" % (output) 
- 52          raise NotImplementedError(errmsg) 
- 53   
- 54      for line in lines: 
- 55          line = line.strip() 
- 56          terms = line.split() 
- 57          if opmode == 0: 
- 58              tup   = [] 
- 59   
- 60          if line != "": 
- 61              try: 
- 62                  if opmode == 0:  
- 63                      for i in xrange(colstart, colend+1): 
- 64                          val = float(terms[i]) 
- 65                          tup.append(val) 
- 66                      dataset.append(tup) 
- 67   
- 68                  elif opmode == 1: 
- 69                      for i in xrange(colstart, colend+1): 
- 70                          val = float(terms[i]) 
- 71                          coldatalist[i-colstart].append(val) 
- 72   
- 73                  # END-IF-ELSE 
- 74              except ValueError, err: 
- 75                  errmsg = "%-20s is not valid"% (line.split("\n")[0]) 
- 76                  raise ValueError(errmsg) 
- 77              except IndexError, err: 
- 78                  errmsg = "%-20s is not valid"% (line.split("\n")[0]) 
- 79                  raise IndexError(errmsg) 
- 80          # END-IF 
- 81      # LOOP-OVER 
- 82   
- 83      # 3. prepare output 
- 84      if opmode == 0: 
- 85          return dataset 
- 86   
- 87      elif opmode == 1: 
- 88          arraylist = [] 
- 89          for coldata in coldatalist: 
- 90              iarray = numpy.array(coldata) 
- 91              arraylist.append(iarray) 
- 92   
- 93          return arraylist 
- 94   
- 95      return 
-
         96   
- 97   
-
         98 -def writeToColumnFile(datatupleset=None, dataarrayset=None, filename=None): 
-
         99      """ 
-100      Write a list of tuples or list of arrays to a file 
-101   
-102      Argument: 
-103      - dataset   :   str 
-104      - filename  :   str 
-105   
-106      Return      :   None 
-107      """ 
-108      wbuf = "" 
-109   
-110      if datatupleset is not None: 
-111          # data tuple set 
-112          for r in datatupleset: 
-113              for i in xrange(len(r)): 
-114                  wbuf += "%-15s  " % (r[i]) 
-115              if r != datatupleset[-1]: 
-116                  wbuf += "\n" 
-117          # LOOP-OVER 
-118   
-119      elif dataarrayset is not None: 
-120          # data array set 
-121          length = len(dataarrayset[0]) 
-122          numarr = len(dataarrayset) 
-123          for i in xrange(length): 
-124              for j in xrange(numarr): 
-125                  wbuf += "%-15s  " % (dataarrayset[j][i]) 
-126              if i < length-1: 
-127                  wbuf += "\n" 
-128          # LOOP-OVER 
-129   
-130      else: 
-131          raise NotImplementedError("Input Error") 
-132      # END-IF-ELSE 
-133   
-134      ofile = open(filename, "w") 
-135      ofile.write(wbuf) 
-136      ofile.close() 
-137   
-138      return 
-
        139   
-140   
-141   
-
        142 -def listFileNamesInDirectory(directory): 
-
        143      """ 
-144      Find all the files in a given directory 
-145   
-146      Arguments: 
-147      - directory :   str 
-148   
-149      Return      :   list of str, as file names, 
-150                      * without directory/path with file name 
-151      """ 
-152      import os 
-153       
-154      # 1. System call 
-155      try: 
-156          allfilenameslist = os.listdir(directory) 
-157      except OSError, err: 
-158          errmsg = "List Files in Directory %-30s Error!"% (directory) 
-159          raise FitConfigurationError(errmsg) 
-160       
-161      # 2. Find file names 
-162      filenameslist = [] 
-163      for filename in allfilenameslist: 
-164          filenameslist.append(filename) 
-165   
-166      return filenameslist 
-
        167   
-
        -
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        Module mar_utilities

        source code

        -Utilities for analysis of MAR scans measured at the APS: class - MarSetup -- MAR image plate setup and effective time interval class - SpecMarExposure -- spec record of MAR exposure class MarImage -- records - extracted from MAR image header

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        Classes[hide private]
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        -   - - MarSetup
        - MAR image plate experiment setup. -
        -   - - SpecMarExposure
        - Spec record of MAR exposure -
        -   - - MarImage
        - MAR image records. -
        -   - - ChiFile
        - CHI file with integrated MAR image. -
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        Functions[hide private]
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        getSpecMarExposures(specfile)
        - Return a list of all SpecMarExposure events in specfile.        		 - source code - -
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        defineMarSetup(name, - **kwargs)
        - Define MAR image plate experiment setup for given time interval.        		 - source code - -
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        -   - - __id__ = '$Id: mar_utilities.py 2792 2009-03-02 15:56:43Z wdzh... -
        -   - - _spec_mar_exposures = None -
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        Function Details[hide private]
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        getSpecMarExposures(specfile) -

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        - - Return a list of all SpecMarExposure events in specfile. When specfile - is empty, return empty list. -
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        defineMarSetup(name, - **kwargs) -

        -         		source code  -
        - - 
        -Define MAR image plate experiment setup for given time interval.
-
-Required arguments:
-
-name          -- name of this experiment setup
-start_date    -- time when this setup comes into effect, for example
-                 Mon Aug 21 08:26:51 2006
-stop_date     -- expiry time of this MAR setup
-x_dimension   -- number of pixels in MAR image
-y_dimension   -- number of pixels in MAR image
-xray_wavelength -- x-ray wavelength in Angstroms
-polarization_factor -- Lorentz polarization factor (0.96 for 6ID-D)
-x_pixel_size  -- number of pixels per 1 mm in x direction
-y_pixel_size  -- number of pixels per 1 mm in y direction
-x_beam_center -- x coordinate of beam center in pixels
-y_beam_center -- y coordinate of beam center in pixels
-distance      -- sample to detector distance
-tilt_rotation -- tilt axis rotation
-angle_of_tilt -- tilt magnitude around tilt axis
-tth_step      -- 2 theta step used in integration
-spec_file     -- spec file with scan records
-
-Optional arguments:
-
-spec_fixed_records -- optional file with fixes of wrong spec_file records,
-                      such as invalid FILE or overflown monitor counts
-
-Return instance of MarSetup.
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        __id__

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        -'$Id: mar_utilities.py 2792 2009-03-02 15:56:43Z wdzhou $'
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        Source Code for Module srrietveld.mar_utilities

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2008 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:     
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14  """Utilities for analysis of MAR scans measured at the APS: 
- 15      class MarSetup -- MAR image plate setup and effective time interval 
- 16      class SpecMarExposure -- spec record of MAR exposure 
- 17      class MarImage -- records extracted from MAR image header 
- 18  """ 
- 19   
- 20  # version 
- 21  __id__ = '$Id: mar_utilities.py 2792 2009-03-02 15:56:43Z wdzhou $' 
- 22   
- 23  import os 
- 24  import re 
- 25  import time 
- 26   
- 27  ############################################################################## 
- 28  # classes 
- 29  ############################################################################## 
- 30   
-
         31 -class MarSetup(object): 
-
         32      """MAR image plate experiment setup. 
- 33   
- 34      Required input data members: 
- 35   
- 36      name          -- name of this experiment setup 
- 37      start_date    -- time when this setup comes into effect, for example 
- 38                       Mon Aug 21 08:26:51 2006 
- 39      stop_date     -- expiry time of this MAR setup 
- 40      x_dimension   -- number of pixels in MAR image 
- 41      y_dimension   -- number of pixels in MAR image 
- 42      xray_wavelength -- x-ray wavelength in Angstroms 
- 43      polarization_factor -- Lorentz polarization factor (0.96 for 6ID-D) 
- 44      x_pixel_size  -- number of pixels per 1 mm in x direction 
- 45      y_pixel_size  -- number of pixels per 1 mm in y direction 
- 46      x_beam_center -- x coordinate of beam center in pixels 
- 47      y_beam_center -- y coordinate of beam center in pixels 
- 48      distance      -- sample to detector distance 
- 49      tilt_rotation -- tilt axis rotation 
- 50      angle_of_tilt -- tilt magnitude around tilt axis 
- 51      tth_step      -- 2 theta step used in integration 
- 52      spec_file     -- spec file with scan records 
- 53   
- 54      Optional input data members: 
- 55   
- 56      spec_fixed_records -- optional file with fixes of wrong spec_file records, 
- 57                            such as invalid FILE or overflown monitor counts 
- 58   
- 59      Calculated data members: 
- 60   
- 61      tth_max            -- maximum 2 theta angle possible 
- 62      tth_step_min       -- low boundary for tth_step 
- 63      start_date_seconds -- start time in seconds since 1970-01-01 
- 64      stop_date_seconds  -- stop time in seconds since 1970-01-01 
- 65      xray_energy_keV    -- x-ray energy in keV 
- 66   
- 67      Static members: 
- 68   
- 69      all_setups    -- list of all setups sorted by effective time 
- 70      """ 
- 71   
- 72      # Static data members 
- 73      all_setups = [] 
- 74   
-
         75 -    def __init__(self, name, **kwargs): 
-
         76          """Create new MarSetup.  Must supply all input data members 
- 77          as described in MarSetup.__doc__. 
- 78          """ 
- 79          self.name = name 
- 80          self.start_date = kwargs['start_date'] 
- 81          self.stop_date = kwargs['stop_date'] 
- 82          self.x_dimension = kwargs['x_dimension'] 
- 83          self.y_dimension = kwargs['y_dimension'] 
- 84          self.xray_wavelength = kwargs['xray_wavelength'] 
- 85          self.polarization_factor = kwargs['polarization_factor'] 
- 86          self.x_pixel_size = kwargs['x_pixel_size'] 
- 87          self.y_pixel_size = kwargs['y_pixel_size'] 
- 88          self.x_beam_center = kwargs['x_beam_center'] 
- 89          self.y_beam_center = kwargs['y_beam_center'] 
- 90          self.distance = kwargs['distance'] 
- 91          self.tilt_rotation = kwargs['tilt_rotation'] 
- 92          self.angle_of_tilt = kwargs['angle_of_tilt'] 
- 93          self.tth_step = kwargs['tth_step'] 
- 94          self.spec_file = kwargs['spec_file'] 
- 95          self.spec_fixed_records = kwargs.get('spec_fixed_records', '') 
- 96          # initialize derived members 
- 97          self.tth_max = None 
- 98          self.tth_step_min = None 
- 99          self.start_date_seconds = None 
-100          self.stop_date_seconds = None 
-101          self.xray_energy_keV = None 
-102          # check all arguments 
-103          self.__processArgs() 
-104          return 
-
        105   
-
        106 -    def __eq__(self, other): 
-
        107          """Comparison operator. 
-108          """ 
-109          res = self is other or isinstance(other, MarSetup) and \ 
-110                  str(self) == str(other) 
-111          return res 
-
        112   
-
        113 -    def __processArgs(self): 
-
        114          """Check user data and calculate derived members. 
-115          """ 
-116          import math 
-117          self.tth_max = 180.0/math.pi * math.atan( 
-118                  max(self.x_dimension*self.x_pixel_size/1e3, 
-119                      self.y_dimension*self.y_pixel_size/1e3)/2/self.distance ) 
-120          self.tth_step_min = self.tth_max/min(self.x_dimension, self.y_dimension) 
-121          if self.tth_step < self.tth_step_min: 
-122              raise ValueError, \ 
-123                  "tth_step must be larger than %f" % self.tth_step_min 
-124          self.start_date_seconds = time.mktime(time.strptime(self.start_date)) 
-125          self.stop_date_seconds = time.mktime(time.strptime(self.stop_date)) 
-126          # E = h*c / lambda 
-127          self.xray_energy_keV = 12.398419 / self.xray_wavelength 
-128          if not os.path.isfile(self.spec_file): 
-129              raise IOError, "Cannot open %r" % self.spec_file 
-130          self.spec_file = os.path.abspath(self.spec_file) 
-131          if self.spec_fixed_records: 
-132              if not os.path.isfile(self.spec_fixed_records): 
-133                  raise IOError, "Cannot open %r" % self.spec_fixed_records 
-134              self.spec_fixed_records = os.path.abspath(self.spec_fixed_records) 
-135          # check time values 
-136          if self.start_date_seconds > self.stop_date_seconds: 
-137              raise ValueError, "Invalid values of start_date and stop_date" 
-138          return 
-
        139   
-
        140 -    def __str__(self): 
-
        141          """Nice string representation of MarSetup. 
-142          """ 
-143          lines = [ "[%s]" % self.name, 
-144                  "start_date = %s" % self.start_date, 
-145                  "stop_date = %s" % self.stop_date, 
-146                  "x_dimension = %s" % self.x_dimension, 
-147                  "y_dimension = %s" % self.y_dimension, 
-148                  "xray_wavelength = %s" % self.xray_wavelength, 
-149                  "polarization_factor = %s" % self.polarization_factor, 
-150                  "x_pixel_size = %s" % self.x_pixel_size, 
-151                  "y_pixel_size = %s" % self.y_pixel_size, 
-152                  "x_beam_center = %s" % self.x_beam_center, 
-153                  "y_beam_center = %s" % self.y_beam_center, 
-154                  "distance = %s" % self.distance, 
-155                  "tilt_rotation = %s" % self.tilt_rotation, 
-156                  "angle_of_tilt = %s" % self.angle_of_tilt, 
-157                  "tth_step = %s" % self.tth_step, 
-158                  "spec_file = %s" % self.spec_file, 
-159                  "spec_fixed_records = %s" % self.spec_fixed_records 
-160                  ] 
-161          s = "\n".join(lines) 
-162          return s 
-
        163   
-
        164 -    def define(self): 
-
        165          """Add this MarSetup to global list of effective setups. 
-166          """ 
-167          # check for intersecting effective times: 
-168          start, stop = self.start_date_seconds, self.stop_date_seconds 
-169          for ms in MarSetup.all_setups: 
-170              if start < ms.stop_date_seconds and stop > ms.start_date_seconds: 
-171                  if self == ms:  return 
-172                  raise ValueError, \ 
-173                          "Effective time clashes with setup %r" % ms.name 
-174          # setup seem OK now: 
-175          MarSetup.all_setups.append(self) 
-176          cmp = lambda x, y : x.start_date_seconds < y.start_date_seconds 
-177          MarSetup.all_setups.sort(cmp) 
-178          return 
-
        179   
-
        180 -    def undef(self): 
-
        181          """Remove this MarSetup from global list of effective setups. 
-182          """ 
-183          try: 
-184              MarSetup.all_setups.remove(self) 
-185          except ValueError: 
-186              pass 
-187          return 
-
        188   
-
        189 -    def fit2dIntegrateMacro(self, mar_file, chi_file): 
-
        190          """Build fit2d macro for integrating and saving single scan 
-191   
-192          mar_file  -- path to input MAR image file 
-193          chi_file  -- output chi file 
-194   
-195          Return string. 
-196          """ 
-197          from fit2d_macros import fit2d_integrate 
-198          d = {   'mar_file' : mar_file, 
-199                  'chi_file' : chi_file, 
-200              } 
-201          d.update(self.__dict__) 
-202          s = fit2d_integrate % d 
-203          return s 
-
        204   
-205      # Static methods 
-206   
-
        207 -    def undefAll(): 
-
        208          """Undefine all effective MAR setups.  Static method. 
-209          """ 
-210          del MarSetup.all_setups[:] 
-211          return 
-
        212      undefAll = staticmethod(undefAll) 
-213   
-
        214 -    def getEffectiveSetup(date_seconds): 
-
        215          """Find effective MarSetup at specified time.  Static method. 
-216   
-217          date_seconds -- timestamp in seconds since 1970-01-01 
-218   
-219          Return instance of MarSetup.  
-220          Raise InvalidValue if there is no setup defined at date_seconds. 
-221          """ 
-222          for ms in MarSetup.all_setups: 
-223              if ms.start_date_seconds <= date_seconds <= ms.stop_date_seconds: 
-224                  return ms 
-225          # we get here only when setup was not found 
-226          raise ValueError, "MarSetup not defined for `%s'" % \ 
-227                  time.ctime(date_seconds) 
-228          pass 
-
        229      getEffectiveSetup = staticmethod(getEffectiveSetup) 
-230   
-
        231 -    def fromConfigFileObject(fp): 
-
        232          """Read one or more MarSetups from a file like object.  Static method. 
-233   
-234          fp  -- configuration file object 
-235   
-236          Return list of MarSetup instances. 
-237          """ 
-238          rv = [] 
-239          import ConfigParser 
-240          defaults = {'spec_fixed_records' : ''} 
-241          cfg = ConfigParser.SafeConfigParser(defaults) 
-242          cfg.readfp(fp) 
-243          duplicates = {} 
-244          for sctn in cfg.sections(): 
-245              if sctn in duplicates: 
-246                  raise ConfigParser.DuplicateSectionError, \ 
-247                          "Duplicate section [%s]" % (sctn) 
-248              duplicates[sctn] = None 
-249              # try hard to resolve spec_file value 
-250              cfg_spec_file = cfg.get(sctn, 'spec_file') 
-251              if not os.path.isfile(cfg_spec_file): 
-252                  f_realdir = os.path.dirname(os.path.realpath(f)) 
-253                  cfg_spec_file = os.path.join(f_realdir, cfg_spec_file) 
-254              # define mar setup 
-255              ms = MarSetup(name = sctn, 
-256                      start_date = cfg.get(sctn, 'start_date'), 
-257                      stop_date = cfg.get(sctn, 'stop_date'), 
-258                      x_dimension = cfg.getint(sctn, 'x_dimension'), 
-259                      y_dimension = cfg.getint(sctn, 'y_dimension'), 
-260                      xray_wavelength = cfg.getfloat(sctn, 'xray_wavelength'), 
-261                      polarization_factor = cfg.getfloat(sctn, 'polarization_factor'), 
-262                      x_pixel_size = cfg.getfloat(sctn, 'x_pixel_size'), 
-263                      y_pixel_size = cfg.getfloat(sctn, 'y_pixel_size'), 
-264                      x_beam_center = cfg.getfloat(sctn, 'x_beam_center'), 
-265                      y_beam_center = cfg.getfloat(sctn, 'y_beam_center'), 
-266                      distance = cfg.getfloat(sctn, 'distance'), 
-267                      tilt_rotation = cfg.getfloat(sctn, 'tilt_rotation'), 
-268                      angle_of_tilt = cfg.getfloat(sctn, 'angle_of_tilt'), 
-269                      tth_step = cfg.getfloat(sctn, 'tth_step'), 
-270                      spec_file = cfg_spec_file, 
-271                      spec_fixed_records = cfg.get(sctn, 'spec_fixed_records'), 
-272                      ) 
-273              rv.append(ms) 
-274          return rv 
-
        275      fromConfigFileObject = staticmethod(fromConfigFileObject) 
-276   
-
        277 -    def fromConfigStr(s): 
-
        278          """Read one or more MarSetups from a string.  Static method. 
-279   
-280          s -- string with one or more string representations of MarSetup 
-281   
-282          Return list of MarSetup instances. 
-283          """ 
-284          import cStringIO 
-285          fp = cStringIO.StringIO(s) 
-286          return MarSetup.fromConfigFileObject(fp) 
-
        287      fromConfigStr = staticmethod(fromConfigStr) 
-
        288   
-289  # End of class MarSetup 
-290   
-
        291 -class SpecMarExposure(object): 
-
        292      """Spec record of MAR exposure 
-293   
-294      Data members: 
-295   
-296      record    -- string with full record from the spec file 
-297      d         -- D record, date and time of this exposure 
-298      d_seconds -- d converted to seconds since 1970-01-01 
-299   
-300      Properties (assignemnt updates record): 
-301   
-302      file      -- FILE value 
-303      monitor   -- monitor counts 
-304   
-305      Private members: 
-306   
-307      _Lline    -- index of line with L values 
-308      """ 
-309   
-310      # constants 
-311      __Lidx_monitor = 5 
-312   
-
        313 -    def __init__(self, s): 
-
        314          """Initialize SpecMarExposure from a string. 
-315          The string is searched for the first record of MAR exposure. 
-316          """ 
-317          ifirst = s.index('#MAR exposure') 
-318          ilast = s.index('\n\n', ifirst) + 1 
-319          # fill in data members 
-320          self.record = s[ifirst:ilast] 
-321          self.d = re.search(r'^#D (.+)\s*$', self.record, re.M).group(1) 
-322          self.d_seconds = time.mktime(time.strptime(self.d)) 
-323          self._dir = re.search(r'^#DIR (\S+)', self.record, re.M).group(1) 
-324          self._file = re.search(r'^#FILE (\S+)', self.record, re.M).group(1) 
-325          rx = re.search(r'(^#L .*\n)(^.*)', self.record, re.M) 
-326          self._Lline = self.record[:rx.start(2)].count('\n') 
-327          Lwords = rx.group(2).strip().split() 
-328          self._monitor = float(Lwords[self.__Lidx_monitor]) 
-329          return 
-
        330   
-331      # file property 
-
        332 -    def _get_file(self): 
-
        333          return self._file 
-
        334 -    def _set_file(self, value): 
-
        335          self._file = value 
-336          pat = re.compile(r'^#FILE (\S+)', re.M) 
-337          self.record = pat.sub('#FILE ' + value, self.record) 
-338          return 
-
        339      file = property(_get_file, _set_file) 
-340   
-341      # monitor property 
-
        342 -    def _get_monitor(self): 
-
        343          return self._monitor 
-
        344 -    def _set_monitor(self, value): 
-
        345          lines = self.record.split('\n') 
-346          Lwords = lines[self._Lline].strip().split() 
-347          Lwords[self.__Lidx_monitor] = "%g" % value 
-348          lines[self._Lline] = " ".join(Lwords) 
-349          self.record = "\n".join(lines) 
-350          return  
-
        351      monitor = property(_get_monitor, _set_monitor) 
-352   
-
        353 -    def __str__(self): 
-
        354          """Spec string representation. 
-355          """ 
-356          return self.record 
-
        357   
-358  # End of class SpecMarExposure 
-359   
-
        360 -class MarImage(object): 
-
        361      """MAR image records.  So far only few header records. 
-362   
-363      Data members: 
-364   
-365      mar_file      -- full path to MAR image file 
-366      date          -- date and time of image readout 
-367      format        -- image plate format 
-368      intensity_min -- minimum pixel intensity 
-369      intensity_max -- maximum pixel intensity 
-370      intensity_ave -- average pixel intensity 
-371      intensity_sig -- standard deviation of pixel intensity 
-372   
-373      Calculated data members: 
-374   
-375      date_seconds  -- date converted to seconds 
-376      headlines     -- list of stripped header lines 
-377      mar_setup     -- instance of MarSetup used for integration 
-378      spec_file     -- spec file (normal or fixed) containing spec_record 
-379      spec_record   -- instance of SpecMarExposure record 
-380      chiobj        -- instance of ChiFile with integration results 
-381      tth           -- reference to chiobj.tth 
-382      Iobs          -- reference to chiobj.Iobs 
-383      monitor       -- monitor counts from spec_record 
-384      """ 
-385   
-
        386 -    def __init__(self, mar_file, mar_setup=None): 
-
        387          """Initialize from MAR image file. 
-388   
-389          mar_file  -- MAR image file 
-390          mar_setup -- instance of MarSetup.  The effective setup for particular 
-391                       time can be found by MarSetup.getEffectiveSetup(). 
-392          """ 
-393          # declare data members 
-394          self.mar_file = os.path.abspath(mar_file) 
-395          self.date = None 
-396          self.format = None 
-397          self.intensity_min = None 
-398          self.intensity_max = None 
-399          self.intensity_ave = None 
-400          self.intensity_sig = None 
-401          self.date_seconds = None 
-402          self.headlines = [] 
-403          self._mar_setup = mar_setup 
-404          self._spec_file = None 
-405          self._spec_record = None 
-406          self.tth = None 
-407          self.Iobs = None 
-408          self.fit2d_chi_str = None 
-409          # business done here 
-410          self._readMarFile() 
-411          return 
-
        412   
-413      # mar_setup property, related data get invalidated on change 
-
        414 -    def _get_mar_setup(self): 
-
        415          return self._mar_setup 
-
        416 -    def _set_mar_setup(self, value): 
-
        417          if value == self._mar_setup:    return 
-418          self._spec_file = None 
-419          self._spec_record = None 
-420          self._mar_setup = value 
-
        421      mar_setup = property(_get_mar_setup, _set_mar_setup) 
-422   
-423      # routine for getting spec related properties: 
-
        424 -    def _get_spec_stuff(self): 
-
        425          """Obtain members _spec_file and _spec_record from mar_setup member. 
-426          """ 
-427          # abbreviations: 
-428          ms = self.mar_setup 
-429          basefile = os.path.basename(self.mar_file) 
-430          # figure out if we use normal or fixed spec file 
-431          # first try normal spec_file 
-432          specfile = self.mar_setup.spec_file 
-433          specrecs = [ rc for rc in getSpecMarExposures(ms.spec_file) 
-434                       if rc.d_seconds < self.date_seconds ][-1:] 
-435          if not specrecs: 
-436              raise RuntimeError, "No record for scan %r in specfile %r." % \ 
-437                      (basefile, specfile) 
-438          fixedrecs = [ rc for rc in getSpecMarExposures(ms.spec_fixed_records) 
-439                        if rc.d_seconds < self.date_seconds ][-1:] 
-440          # override specrecs if there is corresponding fixed record 
-441          if fixedrecs and fixedrecs[-1].d_seconds >= specrecs[-1].d_seconds: 
-442              specrecs = fixedrecs 
-443              specfile = ms.spec_fixed_records 
-444          specrecord = specrecs[-1] 
-445          if specrecord.file != os.path.splitext(basefile)[0]: 
-446              raise RuntimeError, "Scan filename %r not matched in %r." % \ 
-447                      (basefile, specfile) 
-448          self._spec_record = specrecord 
-449          self._spec_file = specfile 
-450          return 
-
        451   
-452      # spec_file property, read only 
-
        453 -    def _get_spec_file(self): 
-
        454          if self._spec_file is None:     self._get_spec_stuff() 
-455          return self._spec_file 
-
        456      spec_file = property(_get_spec_file) 
-457   
-458      # spec_record property, read only 
-
        459 -    def _get_spec_record(self): 
-
        460          if self._spec_record is None:   self._get_spec_stuff() 
-461          return self._spec_record 
-
        462      spec_record = property(_get_spec_record) 
-463   
-464      # monitor property, read only 
-
        465 -    def _get_monitor(self): 
-
        466          return self.spec_record.monitor 
-
        467      monitor = property(_get_monitor) 
-468   
-
        469 -    def _readMarFile(self): 
-
        470          """Read and extract data from self.mar_file. 
-471          """ 
-472          f = open(self.mar_file) 
-473          # headlines 
-474          self.headlines = f.readlines(4096) 
-475          first = last = None 
-476          for i, line in zip(range(len(self.headlines)), self.headlines): 
-477              if first is None and 'mar research' in line:    first = i + 1 
-478              if last is None and 'END OF HEADER' in line:    last = i + 1 
-479          self.headlines = [ s.lstrip('#\t ').rstrip() 
-480                  for s in self.headlines[first:last] ] 
-481          # parse headlines 
-482          for line in self.headlines: 
-483              if not line:    continue 
-484              w = line.split() 
-485              if w[0] == 'DATE':      self.date = line[4:].lstrip().rstrip('z') 
-486              if w[0] == 'FORMAT':    self.format = line[6:].lstrip() 
-487              if w[0] == 'INTENSITY': 
-488                  self.intensity_min = float(w[2]) 
-489                  self.intensity_max = float(w[4]) 
-490                  self.intensity_ave = float(w[6]) 
-491                  self.intensity_sig = float(w[8]) 
-492          # date_seconds 
-493          self.date_seconds = time.mktime(time.strptime(self.date)) 
-494          return 
-
        495   
-
        496 -    def integrate(self): 
-
        497          """Integrate this image using fit2d. 
-498          Store results in data members 'tth', 'Iobs' and 'fit2d_chi_str'. 
-499          """ 
-500          # abbreviation 
-501          ms = self.mar_setup 
-502          # prepare fit2d macro and output chi file 
-503          import tempfile 
-504          fdmac, tmpmacfile = tempfile.mkstemp('.mac', 'MarImage_integrate') 
-505          fdchi, tmpchifile = tempfile.mkstemp('.chi', 'MarImage_integrate') 
-506          mac = ms.fit2dIntegrateMacro(self.mar_file, tmpchifile) + '\n' 
-507          os.write(fdmac, mac) 
-508          os.close(fdmac) 
-509          os.close(fdchi) 
-510          # execute fit2d 
-511          save_DISPLAY = os.environ.get('DISPLAY') 
-512          os.unsetenv('DISPLAY') 
-513          d = { 'tmpmacfile' : tmpmacfile } 
-514          d.update(ms.__dict__) 
-515          cmd = ( "fit2d -key -dim%(x_dimension)ix%(y_dimension)i " + 
-516                  "-mac%(tmpmacfile)s" ) % d 
-517          status = os.system(cmd) 
-518          if save_DISPLAY:    os.environ['DISPLAY'] = save_DISPLAY 
-519          if not os.WIFEXITED(status) or os.WEXITSTATUS(status): 
-520              raise RuntimeError, "Execution of %r failed" % cmd 
-521          self.chiobj = ChiFile(tmpchifile) 
-522          self.chiobj.mar_file = self.mar_file 
-523          self.chiobj.date = self.date 
-524          self.chiobj.mar_setup = self.mar_setup 
-525          self.chiobj.spec_record = self.spec_record 
-526          # make links to chiobj data 
-527          self.tth = self.chiobj.tth 
-528          self.Iobs = self.chiobj.Iobs 
-529          # clean temporaries 
-530          os.remove(tmpmacfile) 
-531          os.remove(tmpchifile) 
-532          return 
-
        533   
-
        534 -    def writeChiFile(self, filename): 
-
        535          """Write integrated intensities to a file in CHI format. 
-536   
-537          filename -- output CHI file 
-538          """ 
-539          self.chiobj.write(filename) 
-540          return 
-
        541   
-
        542 -    def writeGSASFile(self, filename): 
-
        543          """Write integrated intensities to a file in GSAS format. 
-544   
-545          filename -- output GSAS file 
-546          """ 
-547          self.chiobj.writeGSAS(filename) 
-548          return 
-
        549   
-550  # End of class MarImage 
-551   
-
        552 -class ChiFile(object): 
-
        553      """CHI file with integrated MAR image.  The CHI file must be in format 
-554      produced by MarImage.writeChiFile() method. 
-555   
-556      Data members: 
-557   
-558      chi_file      -- full path to CHI file 
-559      mar_file      -- path to MAR image file 
-560      date          -- date and time of image readout 
-561      mar_setup     -- instance of MarSetup used for integration 
-562      spec_record   -- instance of SpecMarExposure recorded in ChiFile 
-563      fit2d_head    -- 4-line header of CHI file generated by fit2d 
-564      tth           -- list of 2 theta values in degrees 
-565      Iobs          -- list of integrated raw intensities 
-566   
-567      Calculated data members: 
-568   
-569      monitor       -- monitor counts from spec_record 
-570      Q             -- list of diffraction wavevectors in (A**-1) 
-571      Inor          -- intensities normalized by scaled monitor 
-572      """ 
-573   
-574      monitor_scale = 1.0e-7 
-575   
-
        576 -    def __init__(self, chi_file=None): 
-
        577          """Initialize from existing CHI file. 
-578   
-579          chi_file  -- CHI file in a format of MarImage.writeChiFile() 
-580          """ 
-581          # declare data members 
-582          self.chi_file = None 
-583          self.mar_file = None 
-584          self.date = None 
-585          self._mar_setup = None 
-586          self._spec_record = None 
-587          self.fit2d_head = None 
-588          self.tth = [] 
-589          self.Iobs = [] 
-590          self.monitor = None 
-591          self.Q = [] 
-592          self.Inor = [] 
-593          # business done here 
-594          if chi_file:    self.read(chi_file) 
-595          return 
-
        596   
-597      # spec_record property - assignment updates monitor and Inor 
-
        598 -    def _get_spec_record(self): 
-
        599          return self._spec_record 
-
        600 -    def _set_spec_record(self, value): 
-
        601          if value is self._spec_record:    return 
-602          self._spec_record = value 
-603          self.monitor = self._spec_record.monitor 
-604          self._updateInor() 
-605          return 
-
        606      spec_record = property(_get_spec_record, _set_spec_record) 
-607   
-608      # mar_setup property - assignment updates Q 
-
        609 -    def _get_mar_setup(self): 
-
        610          return self._mar_setup 
-
        611 -    def _set_mar_setup(self, value): 
-
        612          if value == self._mar_setup:    return 
-613          self._mar_setup = value 
-614          self._updateQ() 
-615          return 
-
        616      mar_setup = property(_get_mar_setup, _set_mar_setup) 
-617   
-
        618 -    def read(self, filename): 
-
        619          """Read data from given file.  Detect file format and choose 
-620          appropriate reader. 
-621          """ 
-622          self.chi_file = filename 
-623          body = open(self.chi_file).read() 
-624          if re.match(r'^# Created by mar_utilities', body): 
-625              self.__readMarUtilitiesStr(body) 
-626          elif re.match(r'^# Created by mar_integrate.sh', body): 
-627              raise IOError, "File %r is in unsupported format." % \ 
-628                      self.chi_file 
-629          else: 
-630              self.__readFit2dChiStr(body) 
-631          self._updateQ() 
-632          self._updateInor() 
-633          return 
-
        634   
-
        635 -    def __readMarUtilitiesStr(self, body): 
-
        636          """Read and process data from a string in mar_utilities format. 
-637          """ 
-638          matchdata = re.search(r'^##+ start data\s*$', body, re.M) 
-639          if not matchdata: 
-640              raise IOError, "File %r is not in mar_utilities format." % \ 
-641                      self.chi_file 
-642          headbody = body[:matchdata.end()].rstrip() 
-643          databody = body[matchdata.end():].strip() 
-644          # parsers for headbody sections 
-645          def parseSectionMarImage(s): 
-646              for line in s.split('\n'): 
-647                  bareline = line.lstrip('#').strip() 
-648                  name, value = (bareline.split('=', 1) + 2*[''])[:2] 
-649                  if name == "mar_file":  self.mar_file = value 
-650                  elif name == "date":    self.date = value 
-651              return 
-
        652          def parseSectionMarSetup(s): 
-653              scfg = re.sub(r'(?m)^#   +', '', s) 
-654              self.mar_setup = MarSetup.fromConfigStr(scfg)[0] 
-655              return 
-
        656          def parseSectionSpecMarExposure(s): 
-657              sspec = re.sub(r'(?m)^# {0,3}', '', s) 
-658              self.spec_record = SpecMarExposure(sspec) 
-659              return 
-660          def parseSectionOrigChiHeader(s): 
-661              chihead = re.sub(r'(?m)^# {0,3}', '', s) 
-662              chiheadlines = chihead.split('\n', 4)[:4] 
-663              self.fit2d_head = '\n'.join(chiheadlines) + '\n' 
-664              return 
-665          # split headbody to sections and pass them to parsers 
-666          headrecs = re.split(r'(?m)(^# \w+.*:\s*\n)', headbody) 
-667          for n, s in zip(headrecs[1::2], headrecs[2::2]): 
-668              nb = n.strip('# :\n') 
-669              if nb == 'MarImage': 
-670                  parseSectionMarImage(s) 
-671              elif nb == 'MarSetup': 
-672                  parseSectionMarSetup(s) 
-673              elif nb == 'SpecMarExposure': 
-674                  parseSectionSpecMarExposure(s) 
-675              elif nb == 'Original header in CHI format': 
-676                  parseSectionOrigChiHeader(s) 
-677              else:                   pass 
-678          # read data 
-679          tth, Iobs = [], [] 
-680          for line in databody.split('\n'): 
-681              w = line.split() 
-682              tth.append(float(w[0])) 
-683              Iobs.append(float(w[1])) 
-684          self.tth = tth 
-685          self.Iobs = Iobs 
-686          return 
-687   
-
        688 -    def __readFit2dChiStr(self, body): 
-
        689          """Read and process data from a string in fit2d CHI format. 
-690          """ 
-691          lines = body.rstrip().split('\n') 
-692          # fit2d chi format - 3rd line empty, 4th gives number of points 
-693          if lines[2].strip() == '' and re.match(r'^\d+$', lines[3].strip()): 
-694              start = 4 
-695          # otherwise find the first line that starts with a float 
-696          else: 
-697              float_first = r'^\s*[-+]?(\d+(\.\d*)?|\.\d+)([eE][-+]?\d+)?' 
-698              pos = re.search(float_first, body, re.M).start() 
-699              start = body[:pos].count('\n') 
-700          self.fit2d_head = '\n'.join(lines[:start]) + '\n' 
-701          self.tth, self.Iobs = [], [] 
-702          for line in lines[start:]: 
-703              w = line.split() 
-704              self.tth.append(float(w[0])) 
-705              self.Iobs.append(float(w[1])) 
-706          return 
-
        707   
-
        708 -    def writeStr(self): 
-
        709          """Return string of integrated intensities in CHI format. 
-710          """ 
-711          lines = [] 
-712          lines.append("# Created by mar_utilities version " + 
-713                  __id__.split()[2]) 
-714          # MarImage: 
-715          if self.mar_file: 
-716              lines.append("# MarImage:") 
-717              lines.append("#   mar_file=%s" % self.mar_file) 
-718              lines.append("#   date=%s" % self.date) 
-719          # MarSetup: 
-720          if self.mar_setup: 
-721              lines.append("# MarSetup:") 
-722              lines += [ "#   " + s for s in str(self.mar_setup).split('\n') ] 
-723          # SpecMarExposure: 
-724          if self.spec_record: 
-725              lines.append("# SpecMarExposure:") 
-726              for s in str(self.spec_record).split('\n'): 
-727                  lines.append("#   " + s) 
-728          # Original header in CHI format: 
-729          if self.fit2d_head: 
-730              lines.append("# Original header in CHI format:") 
-731              for s in self.fit2d_head.split('\n', 4)[:4]: 
-732                  lines.append("#   " + s) 
-733          # data are here 
-734          if self.tth:    lines.append("##### start data") 
-735          for tth, iobs in zip(self.tth, self.Iobs): 
-736              lines.append("%-11g %g" % (tth, iobs)) 
-737          rv = re.sub('(?m)\s+$', '', "\n".join(lines)) + '\n' 
-738          return rv 
-
        739   
-
        740 -    def write(self, filename): 
-
        741          """Write integrated intensities to a file in CHI format. 
-742   
-743          filename -- output CHI file 
-744          """ 
-745          s = self.writeStr() 
-746          self.chi_file = filename 
-747          open(filename, 'w').write(s) 
-748          return 
-
        749   
-
        750 -    def writeGSASStr(self): 
-
        751          """Return string of integrated intensities in GSAS format. 
-752          """ 
-753          import math 
-754          lines = [] 
-755          ltitle = 'Angular Profile' 
-756          if self.mar_file:   ltitle += ': %s' % os.path.basename(self.mar_file) 
-757          if len(ltitle) > 80:    ltitle = ltitle[:80] 
-758          lines.append("%-80s" % ltitle) 
-759          ibank = 1 
-760          nchan = len(self.Iobs) 
-761          nrec = int(math.ceil(nchan/10.0)) 
-762          # two-theta0 and dtwo-theta in centidegrees 
-763          tth0_cdg = self.tth[0] * 100 
-764          dtth_cdg = (self.tth[-1] - self.tth[0]) / (len(self.tth) - 1) * 100 
-765          lbank = "BANK %4i %4i %4i CONST%10.5f%10.5f%10.5f%10.5f STD" % \ 
-766                  (ibank, nchan, nrec, tth0_cdg, dtth_cdg, 0, 0) 
-767          lines.append("%-80s" % lbank) 
-768          lrecs = [ "%2i%6.0f" % (1, iobs) for iobs in self.Iobs ] 
-769          for i in range(0, len(lrecs), 10): 
-770              lines.append("".join(lrecs[i:i+10])) 
-771          lines[-1] = "%-80s" % lines[-1] 
-772          rv = "\r\n".join(lines) + "\r\n" 
-773          return rv 
-
        774   
-
        775 -    def writeGSAS(self, filename): 
-
        776          """Write integrated intensities to a file in GSAS format. 
-777   
-778          filename -- output GSAS file 
-779          """ 
-780          s = self.writeGSASStr() 
-781          open(filename, 'w').write(s) 
-782          return 
-
        783   
-
        784 -    def _updateInor(self): 
-
        785          """Update Inor from Iobs values. 
-786          """ 
-787          self.Inor = None 
-788          if not self.Iobs or not self.monitor:   return 
-789          self.Inor = [iobs / (self.monitor*ChiFile.monitor_scale) 
-790                  for iobs in self.Iobs] 
-791          return 
-
        792   
-
        793 -    def _updateQ(self): 
-
        794          """Update Q from tth values. 
-795          """ 
-796          self.Q = None 
-797          if not self.tth or not self.mar_setup:   return 
-798          from math import pi, sin 
-799          lmbd = self.mar_setup.xray_wavelength 
-800          self.Q = [4*pi*sin(pi/180*tth/2) for tth in self.tth] 
-801          return 
-
        802   
-803  # End of class ChiFile 
-804   
-805  ############################################################################## 
-806  # routines 
-807  ############################################################################## 
-808   
-809  # global dictionary of MAR exposure lists 
-810  _spec_mar_exposures = None 
-811   
-
        812 -def getSpecMarExposures(specfile): 
-
        813      """Return a list of all SpecMarExposure events in specfile. 
-814      When specfile is empty, return empty list. 
-815      """ 
-816      if specfile == '':  return [] 
-817      global _spec_mar_exposures 
-818      if _spec_mar_exposures is None:   _spec_mar_exposures = {} 
-819      specpath = os.path.abspath(specfile) 
-820      if specpath in _spec_mar_exposures:   
-821          return _spec_mar_exposures[specpath] 
-822      # here we need to read the spec file 
-823      mexps = [] 
-824      spectext = open(specfile).read().replace('\r', '') 
-825      spectext = spectext.rstrip() + '\n\n' 
-826      recs = re.split('(?ms)(^#MAR exposure.+?\n\n)', spectext) 
-827      for s in recs[1::2]:    mexps.append(SpecMarExposure(s)) 
-828      cmp = lambda x, y : x.d_seconds < y.d_seconds 
-829      mexps.sort(cmp) 
-830      _spec_mar_exposures[specpath] = mexps 
-831      return mexps 
-
        832   
-
        833 -def defineMarSetup(name, **kwargs): 
-
        834      """Define MAR image plate experiment setup for given time interval. 
-835   
-836      Required arguments: 
-837   
-838      name          -- name of this experiment setup 
-839      start_date    -- time when this setup comes into effect, for example 
-840                       Mon Aug 21 08:26:51 2006 
-841      stop_date     -- expiry time of this MAR setup 
-842      x_dimension   -- number of pixels in MAR image 
-843      y_dimension   -- number of pixels in MAR image 
-844      xray_wavelength -- x-ray wavelength in Angstroms 
-845      polarization_factor -- Lorentz polarization factor (0.96 for 6ID-D) 
-846      x_pixel_size  -- number of pixels per 1 mm in x direction 
-847      y_pixel_size  -- number of pixels per 1 mm in y direction 
-848      x_beam_center -- x coordinate of beam center in pixels 
-849      y_beam_center -- y coordinate of beam center in pixels 
-850      distance      -- sample to detector distance 
-851      tilt_rotation -- tilt axis rotation 
-852      angle_of_tilt -- tilt magnitude around tilt axis 
-853      tth_step      -- 2 theta step used in integration 
-854      spec_file     -- spec file with scan records 
-855   
-856      Optional arguments: 
-857   
-858      spec_fixed_records -- optional file with fixes of wrong spec_file records, 
-859                            such as invalid FILE or overflown monitor counts 
-860   
-861      Return instance of MarSetup. 
-862      """ 
-863      mar_setup = MarSetup(name, **kwargs) 
-864      mar_setup.define() 
-865      return mar_setup 
-
        866   
-867  # End of file 
-868   
-
        -
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           Home      Trees      Indices      Help   
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        - - Package srrietveld :: - Module mar_utilities :: - Class ChiFile - - - - - - -
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        -
        - -

        Class ChiFile

        source code

        -
        -object --+
-         |
-        ChiFile
-
        - -
        -

        CHI file with integrated MAR image. The CHI file must be in format - produced by MarImage.writeChiFile() method.

        -

        Data members:

        -

        chi_file -- full path to CHI file mar_file -- path to MAR - image file date -- date and time of image readout mar_setup - -- instance of MarSetup used for integration spec_record -- instance of - SpecMarExposure recorded in ChiFile fit2d_head -- 4-line header of CHI - file generated by fit2d tth -- list of 2 theta values in - degrees Iobs -- list of integrated raw intensities

        -

        Calculated data members:

        - monitor -- monitor counts from spec_record Q -- list - of diffraction wavevectors in (A**-1) Inor -- intensities - normalized by scaled monitor

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - chi_file=None)
        - Initialize from existing CHI file.        		 - source code - -
        - -
        -   - - - - - - -
        _get_spec_record(self) - source code - -
        - -
        -   - - - - - - -
        _set_spec_record(self, - value) - source code - -
        - -
        -   - - - - - - -
        _get_mar_setup(self) - source code - -
        - -
        -   - - - - - - -
        _set_mar_setup(self, - value) - source code - -
        - -
        -   - - - - - - -
        read(self, - filename)
        - Read data from given file.        		 - source code - -
        - -
        -   - - - - - - -
        __readMarUtilitiesStr(self, - body)
        - Read and process data from a string in mar_utilities format.        		 - source code - -
        - -
        -   - - - - - - -
        __readFit2dChiStr(self, - body)
        - Read and process data from a string in fit2d CHI format.        		 - source code - -
        - -
        -   - - - - - - -
        writeStr(self)
        - Return string of integrated intensities in CHI format.        		 - source code - -
        - -
        -   - - - - - - -
        write(self, - filename)
        - Write integrated intensities to a file in CHI format.        		 - source code - -
        - -
        -   - - - - - - -
        writeGSASStr(self)
        - Return string of integrated intensities in GSAS format.        		 - source code - -
        - -
        -   - - - - - - -
        writeGSAS(self, - filename)
        - Write integrated intensities to a file in GSAS format.        		 - source code - -
        - -
        -   - - - - - - -
        _updateInor(self)
        - Update Inor from Iobs values.        		 - source code - -
        - -
        -   - - - - - - -
        _updateQ(self)
        - Update Q from tth values.        		 - source code - -
        - -
        -

        Inherited from object: - __delattr__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__, - __str__ -

        -
        - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - monitor_scale = 1e-07 -
        - - - - - - - - - - - - - - - -
        - - - - - -
        Properties[hide private]
        -
        -   - - spec_record -
        -   - - mar_setup -
        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - chi_file=None) -
        (Constructor) -

        -         		source code  -
        - -

        Initialize from existing CHI file.

        - chi_file -- CHI file in a format of MarImage.writeChiFile() -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        read(self, - filename) -

        -         		source code  -
        - - Read data from given file. Detect file format and choose appropriate - reader. -
        -
        -
        -
        - -
        - -
        - - -
        -

        write(self, - filename) -

        -         		source code  -
        - -

        Write integrated intensities to a file in CHI format.

        - filename -- output CHI file -
        -
        -
        -
        - -
        - -
        - - -
        -

        writeGSAS(self, - filename) -

        -         		source code  -
        - -

        Write integrated intensities to a file in GSAS format.

        - filename -- output GSAS file -
        -
        -
        -
        -
        - - - - - - -
        - - - - - -
        Property Details[hide private]
        -
        - -
        - -
        -

        spec_record

        - -
        -
        Get Method:
        -
        srrietveld.mar_utilities.ChiFile._get_spec_record(self) -
        -
        Set Method:
        -
        srrietveld.mar_utilities.ChiFile._set_spec_record(self, - value) -
        -
        -
        -
        - -
        - -
        -

        mar_setup

        - -
        -
        Get Method:
        -
        srrietveld.mar_utilities.ChiFile._get_mar_setup(self) -
        -
        Set Method:
        -
        srrietveld.mar_utilities.ChiFile._set_mar_setup(self, - value) -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:22 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.mar_utilities.MarImage-class.html b/static_root/doc/srrietveld/developers/srrietveld.mar_utilities.MarImage-class.html deleted file mode 100644 index e4bf9d48..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.mar_utilities.MarImage-class.html +++ /dev/null @@ -1,594 +0,0 @@ - - - - - srrietveld.mar_utilities.MarImage - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module mar_utilities :: - Class MarImage - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class MarImage

        source code

        -
        -object --+
-         |
-        MarImage
-
        - -
        -

        MAR image records. So far only few header records.

        -

        Data members:

        -

        mar_file -- full path to MAR image file date -- date and - time of image readout format -- image plate format intensity_min - -- minimum pixel intensity intensity_max -- maximum pixel intensity - intensity_ave -- average pixel intensity intensity_sig -- standard - deviation of pixel intensity

        -

        Calculated data members:

        - date_seconds -- date converted to seconds headlines -- list of - stripped header lines mar_setup -- instance of MarSetup used for - integration spec_file -- spec file (normal or fixed) containing - spec_record spec_record -- instance of SpecMarExposure record chiobj - -- instance of ChiFile with integration results tth -- - reference to chiobj.tth Iobs -- reference to chiobj.Iobs monitor - -- monitor counts from spec_record

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - mar_file, - mar_setup=None)
        - Initialize from MAR image file.        		 - source code - -
        - -
        -   - - - - - - -
        _get_mar_setup(self) - source code - -
        - -
        -   - - - - - - -
        _set_mar_setup(self, - value) - source code - -
        - -
        -   - - - - - - -
        _get_spec_stuff(self)
        - Obtain members _spec_file and _spec_record from mar_setup - member.        		 - source code - -
        - -
        -   - - - - - - -
        _get_spec_file(self) - source code - -
        - -
        -   - - - - - - -
        _get_spec_record(self) - source code - -
        - -
        -   - - - - - - -
        _get_monitor(self) - source code - -
        - -
        -   - - - - - - -
        _readMarFile(self)
        - Read and extract data from self.mar_file.        		 - source code - -
        - -
        -   - - - - - - -
        integrate(self)
        - Integrate this image using fit2d.        		 - source code - -
        - -
        -   - - - - - - -
        writeChiFile(self, - filename)
        - Write integrated intensities to a file in CHI format.        		 - source code - -
        - -
        -   - - - - - - -
        writeGSASFile(self, - filename)
        - Write integrated intensities to a file in GSAS format.        		 - source code - -
        - -
        -

        Inherited from object: - __delattr__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__, - __str__ -

        -
        - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Properties[hide private]
        -
        -   - - mar_setup -
        -   - - spec_file -
        -   - - spec_record -
        -   - - monitor -
        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - mar_file, - mar_setup=None) -
        (Constructor) -

        -         		source code  -
        - - 
        -Initialize from MAR image file.
-
-mar_file  -- MAR image file
-mar_setup -- instance of MarSetup.  The effective setup for particular
-             time can be found by MarSetup.getEffectiveSetup().
-
-
        -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        integrate(self) -

        -         		source code  -
        - - Integrate this image using fit2d. Store results in data members 'tth', - 'Iobs' and 'fit2d_chi_str'. -
        -
        -
        -
        - -
        - -
        - - -
        -

        writeChiFile(self, - filename) -

        -         		source code  -
        - -

        Write integrated intensities to a file in CHI format.

        - filename -- output CHI file -
        -
        -
        -
        - -
        - -
        - - -
        -

        writeGSASFile(self, - filename) -

        -         		source code  -
        - -

        Write integrated intensities to a file in GSAS format.

        - filename -- output GSAS file -
        -
        -
        -
        -
        - - - - - - -
        - - - - - -
        Property Details[hide private]
        -
        - -
        - -
        -

        mar_setup

        - -
        -
        Get Method:
        -
        srrietveld.mar_utilities.MarImage._get_mar_setup(self) -
        -
        Set Method:
        -
        srrietveld.mar_utilities.MarImage._set_mar_setup(self, - value) -
        -
        -
        -
        - -
        - -
        -

        spec_file

        - -
        -
        Get Method:
        -
        srrietveld.mar_utilities.MarImage._get_spec_file(self) -
        -
        -
        -
        - -
        - -
        -

        spec_record

        - -
        -
        Get Method:
        -
        srrietveld.mar_utilities.MarImage._get_spec_record(self) -
        -
        -
        -
        - -
        - -
        -

        monitor

        - -
        -
        Get Method:
        -
        srrietveld.mar_utilities.MarImage._get_monitor(self) -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
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        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:22 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.mar_utilities.MarSetup-class.html b/static_root/doc/srrietveld/developers/srrietveld.mar_utilities.MarSetup-class.html deleted file mode 100644 index 5d5f58e0..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.mar_utilities.MarSetup-class.html +++ /dev/null @@ -1,626 +0,0 @@ - - - - - srrietveld.mar_utilities.MarSetup - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module mar_utilities :: - Class MarSetup - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class MarSetup

        source code

        -
        -object --+
-         |
-        MarSetup
-
        - -
        -
        -MAR image plate experiment setup.
-
-Required input data members:
-
-name          -- name of this experiment setup
-start_date    -- time when this setup comes into effect, for example
-                 Mon Aug 21 08:26:51 2006
-stop_date     -- expiry time of this MAR setup
-x_dimension   -- number of pixels in MAR image
-y_dimension   -- number of pixels in MAR image
-xray_wavelength -- x-ray wavelength in Angstroms
-polarization_factor -- Lorentz polarization factor (0.96 for 6ID-D)
-x_pixel_size  -- number of pixels per 1 mm in x direction
-y_pixel_size  -- number of pixels per 1 mm in y direction
-x_beam_center -- x coordinate of beam center in pixels
-y_beam_center -- y coordinate of beam center in pixels
-distance      -- sample to detector distance
-tilt_rotation -- tilt axis rotation
-angle_of_tilt -- tilt magnitude around tilt axis
-tth_step      -- 2 theta step used in integration
-spec_file     -- spec file with scan records
-
-Optional input data members:
-
-spec_fixed_records -- optional file with fixes of wrong spec_file records,
-                      such as invalid FILE or overflown monitor counts
-
-Calculated data members:
-
-tth_max            -- maximum 2 theta angle possible
-tth_step_min       -- low boundary for tth_step
-start_date_seconds -- start time in seconds since 1970-01-01
-stop_date_seconds  -- stop time in seconds since 1970-01-01
-xray_energy_keV    -- x-ray energy in keV
-
-Static members:
-
-all_setups    -- list of all setups sorted by effective time
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - name, - **kwargs)
        - Create new MarSetup.        		 - source code - -
        - -
        -   - - - - - - -
        __eq__(self, - other)
        - Comparison operator.        		 - source code - -
        - -
        -   - - - - - - -
        __processArgs(self)
        - Check user data and calculate derived members.        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - Nice string representation of MarSetup.        		 - source code - -
        - -
        -   - - - - - - -
        define(self)
        - Add this MarSetup to global list of effective setups.        		 - source code - -
        - -
        -   - - - - - - -
        undef(self)
        - Remove this MarSetup from global list of effective setups.        		 - source code - -
        - -
        -   - - - - - - -
        fit2dIntegrateMacro(self, - mar_file, - chi_file)
        - Build fit2d macro for integrating and saving single scan        		 - source code - -
        - -
        -

        Inherited from object: - __delattr__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__ -

        -
        - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Static Methods[hide private]
        -
        -   - - - - - - -
        undefAll()
        - Undefine all effective MAR setups.        		 - source code - -
        - -
        -   - - - - - - -
        getEffectiveSetup(date_seconds)
        - Find effective MarSetup at specified time.        		 - source code - -
        - -
        -   - - - - - - -
        fromConfigFileObject(fp)
        - Read one or more MarSetups from a file like object.        		 - source code - -
        - -
        -   - - - - - - -
        fromConfigStr(s)
        - Read one or more MarSetups from a string.        		 - source code - -
        - -
        - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - all_setups = [] -
        - - - - - - - - - -
        - - - - - -
        Properties[hide private]
        -
        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - name, - **kwargs) -
        (Constructor) -

        -         		source code  -
        - - Create new MarSetup. Must supply all input data members as described - in MarSetup.__doc__. -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        __str__(self) -
        (Informal representation operator) -

        -         		source code  -
        - - Nice string representation of MarSetup. -
        -
        Overrides: - object.__str__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        fit2dIntegrateMacro(self, - mar_file, - chi_file) -

        -         		source code  -
        - -

        Build fit2d macro for integrating and saving single scan

        -

        mar_file -- path to input MAR image file chi_file -- output chi - file

        - Return string. -
        -
        -
        -
        - -
        - -
        - - -
        -

        undefAll() -
        Static Method -

        -         		source code  -
        - - Undefine all effective MAR setups. Static method. -
        -
        -
        -
        - -
        - -
        - - -
        -

        getEffectiveSetup(date_seconds) -
        Static Method -

        -         		source code  -
        - -

        Find effective MarSetup at specified time. Static method.

        -

        date_seconds -- timestamp in seconds since 1970-01-01

        - Return instance of MarSetup. Raise InvalidValue if there is no setup - defined at date_seconds. -
        -
        -
        -
        - -
        - -
        - - -
        -

        fromConfigFileObject(fp) -
        Static Method -

        -         		source code  -
        - -

        Read one or more MarSetups from a file like object. Static - method.

        -

        fp -- configuration file object

        - Return list of MarSetup instances. -
        -
        -
        -
        - -
        - -
        - - -
        -

        fromConfigStr(s) -
        Static Method -

        -         		source code  -
        - -

        Read one or more MarSetups from a string. Static method.

        -

        s -- string with one or more string representations of MarSetup

        - Return list of MarSetup instances. -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
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        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:22 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.mar_utilities.SpecMarExposure-class.html b/static_root/doc/srrietveld/developers/srrietveld.mar_utilities.SpecMarExposure-class.html deleted file mode 100644 index 711e4a53..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.mar_utilities.SpecMarExposure-class.html +++ /dev/null @@ -1,441 +0,0 @@ - - - - - srrietveld.mar_utilities.SpecMarExposure - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module mar_utilities :: - Class SpecMarExposure - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class SpecMarExposure

        source code

        -
        -object --+
-         |
-        SpecMarExposure
-
        - -
        -

        Spec record of MAR exposure

        -

        Data members:

        -

        record -- string with full record from the spec file d -- D - record, date and time of this exposure d_seconds -- d converted to - seconds since 1970-01-01

        -

        Properties (assignemnt updates record):

        -

        file -- FILE value monitor -- monitor counts

        -

        Private members:

        - _Lline -- index of line with L values

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - s)
        - Initialize SpecMarExposure from a string.        		 - source code - -
        - -
        -   - - - - - - -
        _get_file(self) - source code - -
        - -
        -   - - - - - - -
        _set_file(self, - value) - source code - -
        - -
        -   - - - - - - -
        _get_monitor(self) - source code - -
        - -
        -   - - - - - - -
        _set_monitor(self, - value) - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - Spec string representation.        		 - source code - -
        - -
        -

        Inherited from object: - __delattr__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__ -

        -
        - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - __Lidx_monitor = 5 -
        - - - - - - - - - - - - - - - -
        - - - - - -
        Properties[hide private]
        -
        -   - - file -
        -   - - monitor -
        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - s) -
        (Constructor) -

        -         		source code  -
        - - Initialize SpecMarExposure from a string. The string is searched for - the first record of MAR exposure. -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        __str__(self) -
        (Informal representation operator) -

        -         		source code  -
        - - Spec string representation. -
        -
        Overrides: - object.__str__ -
        -
        -
        -
        -
        - - - - - - -
        - - - - - -
        Property Details[hide private]
        -
        - -
        - -
        -

        file

        - -
        -
        Get Method:
        -
        srrietveld.mar_utilities.SpecMarExposure._get_file(self) -
        -
        Set Method:
        -
        srrietveld.mar_utilities.SpecMarExposure._set_file(self, - value) -
        -
        -
        -
        - -
        - -
        -

        monitor

        - -
        -
        Get Method:
        -
        srrietveld.mar_utilities.SpecMarExposure._get_monitor(self) -
        -
        Set Method:
        -
        srrietveld.mar_utilities.SpecMarExposure._set_monitor(self, - value) -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
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        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:22 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.measurements-module.html b/static_root/doc/srrietveld/developers/srrietveld.measurements-module.html deleted file mode 100644 index ec08a0f1..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.measurements-module.html +++ /dev/null @@ -1,217 +0,0 @@ - - - - - srrietveld.measurements - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
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        - - Package srrietveld :: - Module measurements - - - - - - -
        [hide private]
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        -
        - -

        Module measurements

        source code

        -
        -
-Measurement:    Classes to handle measurement information interfaced
-                with the user
-
-   * List of Setting Methods:
-   -  __init__(self):
-   -  setBankNumber(self, bankno):
-   -  setDataFileName(self, filename):
-   -  setBackground(self, backgroundinfo):
-   -  setMeasureRange(self, measurerange):
-   -  addExcludedRegions(self, excludedregions):
-
-   * List of Information Retrieval Methods:
-   -  getBankNumber(self)
-   -  getDataFileName(self)
-   -  getBackgroundType(self)
-   -  getBackgroundDict(self)
-   -  getMeasureRange(self)
-   -  getExcludedRegions(self)
-
-Created On: 2008.07.29
-
-


        - - - - - - - - - - -
        - - - - - -
        Classes[hide private]
        -
        -   - - Measurement
        - Base class for the information of a typical measurement... -
        - - - - - - - - - -
        - - - - - -
        Variables[hide private]
        -
        -   - - __id__ = '$Id: measurements.py 2918 2009-03-18 19:26:39Z wdzho... -
        - - - - - - -
        - - - - - -
        Variables Details[hide private]
        -
        - -
        - -
        -

        __id__

        - -
        -
        -
        -
        Value:
        - 
        -'$Id: measurements.py 2918 2009-03-18 19:26:39Z wdzhou $'
-
        -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
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        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:22 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.measurements-pysrc.html b/static_root/doc/srrietveld/developers/srrietveld.measurements-pysrc.html deleted file mode 100644 index 1b04d68a..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.measurements-pysrc.html +++ /dev/null @@ -1,370 +0,0 @@ - - - - - srrietveld.measurements - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module measurements - - - - - - -
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        -
        -

        Source Code for Module srrietveld.measurements

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2008 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Wenduo Zhou 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14   
- 15  """ 
- 16   Measurement:    Classes to handle measurement information interfaced 
- 17                   with the user 
- 18   
- 19      * List of Setting Methods: 
- 20      -  __init__(self): 
- 21      -  setBankNumber(self, bankno): 
- 22      -  setDataFileName(self, filename): 
- 23      -  setBackground(self, backgroundinfo): 
- 24      -  setMeasureRange(self, measurerange): 
- 25      -  addExcludedRegions(self, excludedregions): 
- 26   
- 27      * List of Information Retrieval Methods: 
- 28      -  getBankNumber(self) 
- 29      -  getDataFileName(self) 
- 30      -  getBackgroundType(self) 
- 31      -  getBackgroundDict(self) 
- 32      -  getMeasureRange(self) 
- 33      -  getExcludedRegions(self) 
- 34   
- 35   Created On: 2008.07.29 
- 36  """ 
- 37  __id__ = "$Id: measurements.py 2918 2009-03-18 19:26:39Z wdzhou $" 
- 38   
- 39  from    diffpy.refinementapi.errors         import FitConfigurationError 
- 40   
-
         41 -class Measurement(object): 
-
         42      """ 
- 43      Base class for the information of a typical measurement 
- 44   
- 45      This is for a SINGLE MEASUREMETN such 
- 46      (1) One bank measure in a TOF experiment 
- 47      (2) One 2-theta data in a constant wave experiment 
- 48       
- 49      Methods List: 
- 50      - 
- 51      - 
- 52      - 
- 53      """ 
-
         54 -    def __init__(self): 
-
         55          """ 
- 56          initialization 
- 57          """ 
- 58          self._banknumber        = -1 
- 59          self._datafname         = "" 
- 60          self._measurerange      = None 
- 61          self._excludedregions   = [] 
- 62          self._backgrounddict    = None 
- 63   
- 64          return 
-
         65   
- 66   
-
         67 -    def getBankNumber(self): 
-
         68          """ 
- 69          Return Bank Number 
- 70   
- 71          Return  :   integer 
- 72          """ 
- 73          return self._banknumber 
-
         74   
- 75   
-
         76 -    def setBankNumber(self, bankno): 
-
         77          """ 
- 78          Set the bank number, which should >= 0 
- 79   
- 80          Argument: 
- 81          - bankno    :   int, >= 0 
- 82   
- 83          Return      :   None 
- 84          """ 
- 85          if not isinstance(bankno, int): 
- 86              errmsg = "Bank Number Must Be Integer Input = %-5s of Type %-10s"% (bankno, type(bankno)) 
- 87              raise FitConfigurationError(errmsg) 
- 88   
- 89          if bankno < 0: 
- 90              errmsg = "Bank Number Cannot Be Less Than 0; Input = %-5s"% (bankno) 
- 91              raise FitConfigurationError(errmsg) 
- 92   
- 93          self._banknumber = bankno 
- 94   
- 95          return 
-
         96   
- 97   
-
         98 -    def getDataFileName(self): 
-
         99          """ 
-100          Return Bank Number 
-101   
-102          Return  :   str 
-103          """ 
-104          if self._datafname == "": 
-105              errmsg = "DataFileName Haven't Been Setup" 
-106              raise FitConfigurationError(errmsg) 
-107           
-108          return self._datafname 
-
        109   
-110   
-
        111 -    def setDataFileName(self, filename): 
-
        112          """ 
-113          Set the bank number, which should >= 0 
-114   
-115          Argument: 
-116          - bankno    :   int, >= 0 
-117   
-118          Return      :   None 
-119          """ 
-120          if not isinstance(filename, str): 
-121              errmsg = "%-20s: setDataFileName: Data File Name Must Be String! " \ 
-122                      % (self.__class__.__name__) + "Current input = %-5s of Type %-10s" \ 
-123                      % (filename, filename.__class__.__name__) 
-124              raise FitConfigurationError(errmsg) 
-125   
-126          self._datafname = filename 
-127   
-128          return 
-
        129   
-130   
-
        131 -    def getBackgroundType(self): 
-
        132          """ 
-133          Return background type 
-134   
-135          Return  :   str 
-136          """ 
-137          return self._backgroundtype 
-
        138   
-139   
-
        140 -    def getBackgroundDictionary(self): 
-
        141          """ 
-142          Return background parameter dictionary 
-143   
-144          Return  :   dictionary 
-145          """ 
-146          return self._backgrounddict 
-
        147   
-148   
-
        149 -    def setBackground(self, backgroundtype, backgroundinfo): 
-
        150          """ 
-151          Set the background information 
-152   
-153          Argument: 
-154          - backgroundtype    :    
-155          - backgroundict     :   Dictionary of background information 
-156   
-157          Return      :   None 
-158          """ 
-159          if not isinstance(backgroundinfo, dict): 
-160              raise FitConfigurationError("Input backgroundinfo is of type %-20s NOT dictionary") 
-161          self._backgroundtype = backgroundtype 
-162          self._backgrounddict = backgroundinfo 
-163   
-164          return 
-
        165   
-166   
-
        167 -    def getMeasureRange(self): 
-
        168          """ 
-169          Return Measurement Range 
-170   
-171          Return  :   tuple 
-172          """ 
-173          return self._measurerange 
-
        174   
-175   
-
        176 -    def setMeasureRange(self, measurerange): 
-
        177          """ 
-178          Set the Measurement Range,  
-179   
-180          Argument: 
-181          - bankno    :   int, >= 0 
-182   
-183          Return      :   None 
-184          """ 
-185          self._measurerange = measurerange 
-186   
-187          return 
-
        188   
-189   
-
        190 -    def getExcludedRegions(self): 
-
        191          """ 
-192          Return Excluded Regions 
-193   
-194          Return  :   tuple 
-195          """ 
-196          return self._excludedregions 
-
        197   
-198   
-
        199 -    def addExcludedRegion(self, bankno, start, end): 
-
        200          """ 
-201          Set the Excluded Regions 
-202   
-203          Argument: 
-204          - bankno    :   int, 
-205          - start     :   float 
-206          - end       :   float 
-207   
-208          Return      :   None 
-209          """ 
-210          region = {} 
-211          region["Begin"] = start 
-212          region["End"]   = end 
-213          self._excludedregions.append(region) 
-214   
-215          return 
-
        216   
-217  # END CLASS: class Measurement(object): 
-218   
-
        -
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        Class Measurement

        source code

        -
        -object --+
-         |
-        Measurement
-
        - -
        -
        -
-Base class for the information of a typical measurement
-
-This is for a SINGLE MEASUREMETN such
-(1) One bank measure in a TOF experiment
-(2) One 2-theta data in a constant wave experiment
-
-Methods List:
--
--
--
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        getBankNumber(self)
        - Return Bank Number        		 - source code - -
        - -
        -   - - - - - - -
        setBankNumber(self, - bankno)
        - Set the bank number, which should >= 0...        		 - source code - -
        - -
        -   - - - - - - -
        getDataFileName(self)
        - Return Bank Number        		 - source code - -
        - -
        -   - - - - - - -
        setDataFileName(self, - filename)
        - Set the bank number, which should >= 0...        		 - source code - -
        - -
        -   - - - - - - -
        getBackgroundType(self)
        - Return background type        		 - source code - -
        - -
        -   - - - - - - -
        getBackgroundDictionary(self)
        - Return background parameter dictionary        		 - source code - -
        - -
        -   - - - - - - -
        setBackground(self, - backgroundtype, - backgroundinfo)
        - Set the background information...        		 - source code - -
        - -
        -   - - - - - - -
        getMeasureRange(self)
        - Return Measurement Range        		 - source code - -
        - -
        -   - - - - - - -
        setMeasureRange(self, - measurerange)
        - Set the Measurement Range, ...        		 - source code - -
        - -
        -   - - - - - - -
        getExcludedRegions(self)
        - Return Excluded Regions        		 - source code - -
        - -
        -   - - - - - - -
        addExcludedRegion(self, - bankno, - start, - end)
        - Set the Excluded Regions...        		 - source code - -
        - -
        -

        Inherited from object: - __delattr__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__, - __str__ -

        -
        - - - - - - - - - -
        - - - - - -
        Properties[hide private]
        -
        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self) -
        (Constructor) -

        -         		source code  -
        - - initialization -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        getBankNumber(self) -

        -         		source code  -
        - -

        Return Bank Number

        - Return : integer -
        -
        -
        -
        - -
        - -
        - - -
        -

        setBankNumber(self, - bankno) -

        -         		source code  -
        - - 
        -
-Set the bank number, which should >= 0
-
-Argument:
-- bankno    :   int, >= 0
-
-Return      :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getDataFileName(self) -

        -         		source code  -
        - -

        Return Bank Number

        - Return : str -
        -
        -
        -
        - -
        - -
        - - -
        -

        setDataFileName(self, - filename) -

        -         		source code  -
        - - 
        -
-Set the bank number, which should >= 0
-
-Argument:
-- bankno    :   int, >= 0
-
-Return      :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getBackgroundType(self) -

        -         		source code  -
        - -

        Return background type

        - Return : str -
        -
        -
        -
        - -
        - -
        - - -
        -

        getBackgroundDictionary(self) -

        -         		source code  -
        - -

        Return background parameter dictionary

        - Return : dictionary -
        -
        -
        -
        - -
        - -
        - - -
        -

        setBackground(self, - backgroundtype, - backgroundinfo) -

        -         		source code  -
        - - 
        -
-Set the background information
-
-Argument:
-- backgroundtype    :   
-- backgroundict     :   Dictionary of background information
-
-Return      :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getMeasureRange(self) -

        -         		source code  -
        - -

        Return Measurement Range

        - Return : tuple -
        -
        -
        -
        - -
        - -
        - - -
        -

        setMeasureRange(self, - measurerange) -

        -         		source code  -
        - - 
        -
-Set the Measurement Range, 
-
-Argument:
-- bankno    :   int, >= 0
-
-Return      :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getExcludedRegions(self) -

        -         		source code  -
        - -

        Return Excluded Regions

        - Return : tuple -
        -
        -
        -
        - -
        - -
        - - -
        -

        addExcludedRegion(self, - bankno, - start, - end) -

        -         		source code  -
        - - 
        -
-Set the Excluded Regions
-
-Argument:
-- bankno    :   int,
-- start     :   float
-- end       :   float
-
-Return      :   None
-
-
        -
        -
        -
        -
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        - - Package srrietveld :: - Module midscript - - - - - - -
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        -
        - -

        Module midscript

        source code

        -

        container for a series of middle-level API supporting end-user scripts - these API are NOT defined in standard diffpy.rietveldapi they are in the - mode of conceptual testing and subject to major modification

        - External Methods List: -
          -
        • - initTCHProfilePseudoVoigt(parameterdict=None, peakrange=8.0, - u=1.0, v=1.0, w=1.0, x=0.0, y=0.0) -
          • -
        • - getPatterns(fit): -
          • -


        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Functions[hide private]
        -
        -   - - - - - - -
        getPatterns(fit)
        - Get all the patterns of a Fit instance...        		 - source code - -
        - -
        -   - - - - - - -
        setPattern(pat, - dfname, - parser)
        - basic functions to set up a Pattern...        		 - source code - -
        - -
        -   - - - - - - -
        mapStructure(sourcefit, - targetfit)
        - Map the strcture parameters from a Fit instance to another instance...        		 - source code - -
        - -
        -   - - - - - - -
        initTOFPattern(dfname, - parser, - bank=1, - dangle=None, - excludedregions=None, - dtt1=None, - dtt2=None, - zshift=0.0, - xcross=0.0, - width=0.0)
        - initialize and set up a TOF pattern with all necessary parameters...        		 - source code - -
        - -
        -   - - - - - - -
        initThermalTOFPattern(dfname, - parser, - bank=1, - dangle=None, - excludedregions=None, - dtt1=None, - dtt2=None, - zshift=0.0, - dtt1t=None, - dtt2t=None, - zerot=0.0, - xcross=None, - width=None)
        - Initialize Thermal Neutron TOF Pattern        		 - source code - -
        - -
        -   - - - - - - -
        setCWPattern(pat, - dfname, - parser, - wavelength, - wavelength2=0.0, - ratio=0.0, - zshift=0.0, - region=None)
        - set up a Constant Wavelength Pattern pattern with all necessary parameters...        		 - source code - -
        - -
        -   - - - - - - -
        initCWXrayPattern(dfname, - parser, - wavelength, - wavelength2=0.0, - ratio=0.0, - zshift=0.0, - region=None, - resfname=None)
        - initalize and set up a constant wavelength X-ray pattern with all necessary parameters...        		 - source code - -
        - -
        -   - - - - - - -
        initCWNeutronPattern(dfname, - parser, - wavelength, - wavelength2=0.0, - ratio=0.0, - zshift=0.0, - region=None, - resfname=None)
        - initialize and set up a constant wavelength neutron pattern with all necessary parameters...        		 - source code - -
        - -
        -   - - - - - - -
        initBackground(backgroundType, - backgroundPoints)
        - initialize a Background instance and set value to it        		 - source code - -
        - -
        -   - - - - - - -
        initPolynomialBackground(backgroundPoints, - order=12)
        - initialze a Polynomial background        		 - source code - -
        - -
        -   - - - - - - -
        initInterpolatedBackground(backgroundpoints, - btype='linear')
        - user will use the background interpolated from a list of user-selected ...        		 - source code - -
        - -
        -   - - - - - - -
        setExcludedRegion(pattern, - excludedregionslist)
        - Set excluded regions to a pattern...        		 - source code - -
        - -
        -   - - - - - - -
        setRefineRegion(pattern, - regionlist)
        - user defines the region to refine in a more directed manner than ...        		 - source code - -
        - -
        -   - - - - - - -
        reloadData(myfit, - datafilename, - bankid=None)
        - Load another data file to current Fit instance.        		 - source code - -
        - -
        -   - - - - - - -
        addAtom(phase, - atomtype, - fractcoordinate, - occ, - biso, - baniso=None, - atomtag='auto')
        - add an atom to a phase instance...        		 - source code - -
        - -
        -   - - - - - - -
        Cubic(a)
        - set the lattice to be cubic...        		 - source code - -
        - -
        -   - - - - - - -
        genLattice(a, - b, - c, - alpha, - beta, - gamma)
        - generate a Lattice withtout further knowledge...        		 - source code - -
        - -
        -   - - - - - - -
        initCrystalPhase(lattice, - spacegroup, - phasename='')
        - initialize and set a CrystalPhase instance...        		 - source code - -
        - -
        -   - - - - - - -
        replaceStructureModel(thefit, - modeltuplelist, - cindex='all')
        - Replace the structure model inside a Fit object...        		 - source code - -
        - -
        -   - - - - - - -
        initProfilePseudoVoigtIkedaCarpenter(sig0=0.0, - sig1=0.0, - sig2=0.0, - gam0=0.0, - gam1=0.0, - gam2=0.0)
        - new and set up a Pseudo-Voig Ikeda-Carpenter peak profile instance...        		 - source code - -
        - -
        -   - - - - - - -
        initPseudoVoigtExpDSpacing(parameterdict=None, - peakrange=8.0, - sig0=0.0, - sig1=0.0, - sig2=0.0, - gam0=0.0, - gam1=0.0, - gam2=0.0)
        - New and set up a PsuedoVoigt Exponent D-Spacing...        		 - source code - -
        - -
        -   - - - - - - -
        initPseudoVoigtExp(parameterdict=None, - peakrange=8.0, - sig0=0.0, - sig1=0.0, - sig2=0.0, - gam0=0.0, - gam1=0.0, - gam2=0.0)
        - New and set up a PsuedoVoigt Exponent back-to-back...        		 - source code - -
        - -
        -   - - - - - - -
        initExponentialDecay(parameterdict=None, - alph0=0.0, - beta0=0.0, - alph1=0.0, - beta1=0.0)
        - Initializae a Thermal Expoential-Decay Object...        		 - source code - -
        - -
        -   - - - - - - -
        initThermalExponentialDecay(parameterdict=None, - alph0=0.0, - beta0=0.0, - alph1=0.0, - beta1=0.0, - alph0t=0.0, - beta0t=0.0, - alph1t=0.0, - beta1t=0.0)
        - Initializae a Thermal Expoential-Decay Object...        		 - source code - -
        - -
        -   - - - - - - -
        initCylindricalAbsorptionCorrection(parameterdict=None, - abs1=0.0, - abs2=0.0)
        - Initialize and set up an Absorption-Correction object...        		 - source code - -
        - -
        -   - - - - - - -
        set2ThetaSymmetricPeakProfile(prof, - peakrange, - u=1.0, - v=1.0, - w=1.0, - x=1.0, - y=1.0, - resfile=None)
        - set up a 2-theta symmetric peak profile...        		 - source code - -
        - -
        -   - - - - - - -
        initProfileGaussian(peakrange=8.0, - u=1.0, - v=1.0, - w=1.0, - x=0.0, - y=0.0)
        - initalize and set up a Gaussian PeakProfile instance        		 - source code - -
        - -
        -   - - - - - - -
        initProfilePseudoVoigt(parameterdict=None, - peakrange=8.0, - u=1.0, - v=1.0, - w=1.0, - x=0.0, - y=0.0, - eta0=1.0)
        - initialize and set up a Pseudo Voigt Peak Profile instance...        		 - source code - -
        - -
        -   - - - - - - -
        initProfileTCHPseudoVoigt(parameterdict=None, - peakrange=8.0, - u=1.0, - v=1.0, - w=1.0, - x=0.0, - y=0.0)
        - initialize and set up a Thomas-Cox-Hasting (TCH) Pseudo Voigt Peak Profile instance...        		 - source code - -
        - -
        -   - - - - - - -
        initProfileSplitPseudoVoigt(parameterdict=None, - peakrange=8.0)
        - initialize and set up a Thomas-Cox-Hasting (TCH) Pseudo Voigt Peak Profile instance...        		 - source code - -
        - -
        -   - - - - - - -
        genPeakProfile(peakprofilename, - parameterdict)
        - Generate a proper PeakProfile object according to some given name...        		 - source code - -
        - -
        -   - - - - - - -
        genFit(instrument, - phaseslist, - experimentslist=None)
        - Generate a Fit instance (Feature fixed)...        		 - source code - -
        - -
        -   - - - - - - -
        addComponent(fit, - pattern, - phases, - background=None, - bkgdvaluelist=None, - bkgdorigin=7000.0, - peakprofile=None, - expdecay=None)
        - generate a RietveldComponent to a Fit instance - -arguments -- pattern : Pattern instance -- phases : list of Phase instance -- background : Background instance -- bkgdvaluelist : list of 2-tuple/float (defualt=None) - 1-tuple: b1, b2, ....        		 - source code - -
        - -
        -   - - - - - - -
        locateRefinableParameter(startobj, - paraname, - info=None)
        - locate the parent object of a specific refinable parameter...        		 - source code - -
        - -
        -   - - - - - - -
        checkMust(fit)
        - check a list of important parameters that must be set right!...        		 - source code - -
        - -
        - - - - - - - - - - - - -
        - - - - - -
        Variables[hide private]
        -
        -   - - __id__ = '$Id: midscript.py 2918 2009-03-18 19:26:39Z wdzhou $' -
        -   - - myEngine = <diffpy.srrietveld.refinebackend.RietveldEngine ins... -
        - - - - - - -
        - - - - - -
        Function Details[hide private]
        -
        - -
        - -
        - - -
        -

        getPatterns(fit) -

        -         		source code  -
        - - 
        -
-Get all the patterns of a Fit instance
-
-Argument    
-- fit   :   Fit instance
-
-Return  :   list of Patterns
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        setPattern(pat, - dfname, - parser) -

        -         		source code  -
        - - 
        -
-basic functions to set up a Pattern
-
-argument:
-- pat       :   Pattern instance
-- dfname    :   string, data file name
-- parser    :   Parser() instance
-
-return  --  None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        mapStructure(sourcefit, - targetfit) -

        -         		source code  -
        - - 
        -
-Map the strcture parameters from a Fit instance to another instance
-
-Requirement:
-* source-Fit and target-Fit have the same Fit structure and same 
-  Crystal structure
-
-Argument:
-- sourcefit :   Fit instance
-- targetfit :   Fit instance
-
-Return      :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        initTOFPattern(dfname, - parser, - bank=1, - dangle=None, - excludedregions=None, - dtt1=None, - dtt2=None, - zshift=0.0, - xcross=0.0, - width=0.0) -

        -         		source code  -
        - - 
        -
-initialize and set up a TOF pattern with all necessary parameters
-
-arguement
-- dfname            :   string, data file name
-- parser            :   Parser() instance
-- dangle            :   double, detector angle
-- bank              :   int, bank number (default=1)
-- excludedregions   :   list of 2-tuples (default=None): excluded region
-- dtt1              :   float (default=None)
-- dtt2              :   float (default=None)
-- resfile           :   resolution file (default=None)
-
-return  --  TOFPattern instance
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        setCWPattern(pat, - dfname, - parser, - wavelength, - wavelength2=0.0, - ratio=0.0, - zshift=0.0, - region=None) -

        -         		source code  -
        - - 
        -
-set up a Constant Wavelength Pattern pattern with all necessary parameters
-
-arguement
-- dfname        :   string, data file name
-- parser        :   Parser() instance
-- region        :   list of 2-tuples (default=None): refine region
-- wavelength    :   float, (first) wave length in A
-- wavelength2   :   float, 2nd wave length in A
-- resfile       :   resolution file (default=None)
-
-return  --  None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        initCWXrayPattern(dfname, - parser, - wavelength, - wavelength2=0.0, - ratio=0.0, - zshift=0.0, - region=None, - resfname=None) -

        -         		source code  -
        - - 
        -
-initalize and set up a constant wavelength X-ray pattern with all necessary parameters
-
-arguement
-- dfname        :   string, data file name
-- parser        :   Parser() instance
-- region        :   list of 2-tuples (default=None): refine region
-- wavelength    :   float, (first) wave length in A
-- wavelength2   :   float, 2nd wave length in A
-- resfile       :   resolution file (default=None)
-
-return  --  CWXrayPattern instance
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        initCWNeutronPattern(dfname, - parser, - wavelength, - wavelength2=0.0, - ratio=0.0, - zshift=0.0, - region=None, - resfname=None) -

        -         		source code  -
        - - 
        -
-initialize and set up a constant wavelength neutron pattern with all necessary parameters
-
-arguement
-- dfname        :   string, data file name
-- parser        :   Parser() instance
-- region        :   list of 2-tuples (default=None): refine region
-- wavelength    :   float, (first) wave length in A
-- wavelength2   :   float, 2nd wave length in A
-- resfile       :   resolution file (default=None)
-
-return  --  CWNeutronPattern instance
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        initPolynomialBackground(backgroundPoints, - order=12) -

        -         		source code  -
        - -

        initialze a Polynomial background

        -

        backgroundPoints : list of float

        - return : PolynomialBackground instance -
        -
        -
        -
        - -
        - -
        - - -
        -

        initInterpolatedBackground(backgroundpoints, - btype='linear') -

        -         		source code  -
        - - 
        -
-user will use the background interpolated from a list of user-selected 
-background points
-
-argument
-- backgroundpoints  :   2D numpy array or a list of 2 (or more) tuples 
-                        as backgroundpoints[x][0] is the position
-                        and backgroundpoints[x][1] is the background
-- btype             :   string, background type
-
-return  --  a Background instance
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        setExcludedRegion(pattern, - excludedregionslist) -

        -         		source code  -
        - - 
        -
-Set excluded regions to a pattern
-
-Argument:
-- pattern               :   diffpy.rietveldapi.DiffractionPattern
-- excludedregionslist   :   list of dict ["Begin", "End"]
-
-Return                  :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        setRefineRegion(pattern, - regionlist) -

        -         		source code  -
        - - 
        -
-user defines the region to refine in a more directed manner than 
-defining excluded region
-
-The refine regions (i.e., excluded regions) defined before will be removed
-by this method
-
-if regionlist = empty list:    region to be refined
-
-argument
-- parentobj :   A RietveldComponent or Pattern instance
-                to hold this diffraction data
-- regionlist:   2D numpy array or a list of 2 (or more) tuples
-                as the region to refine
-
-return  --  None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        reloadData(myfit, - datafilename, - bankid=None) -

        -         		source code  -
        - - 
        -
-Load another data file to current Fit instance. 
-If bankid is given, data file will be set to specific bank.
-Otherwise, the datafilename will be set to all banks/components
-
-Argument:
-- myfit         :   Fit instance
-- datafilename  :   str
-- bankid        :   int
-
-Return          :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        addAtom(phase, - atomtype, - fractcoordinate, - occ, - biso, - baniso=None, - atomtag='auto') -

        -         		source code  -
        - - 
        -
-add an atom to a phase instance
-
-argument
-- phase             :   a Phase instance
-- atomtype          :   string, atom's type
-- fraccoordinate    :   list of float, (x,y,z)
-- occ               :   float, occupancy number
-- biso              :   float, isotropic thermal factor B
-- baniso            :   list/6-tuple/numpy array for B11, B22, B33, B12, B13, B23
-- atomtag           :   tag of the atom, default to be 'auto'
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        Cubic(a) -

        -         		source code  -
        - - 
        -
-set the lattice to be cubic
-
-argument
-- a :   float, lattice size in \AA
-
-return  --  Lattice instance
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        genLattice(a, - b, - c, - alpha, - beta, - gamma) -

        -         		source code  -
        - - 
        -
-generate a Lattice withtout further knowledge
-
-Arguments:
-- a
-- b
-- c
-- alpha
-- beta
-- gamma
-
-Return  :   diffpy.rietveldapi.Lattice
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        initCrystalPhase(lattice, - spacegroup, - phasename='') -

        -         		source code  -
        - - 
        -
-initialize and set a CrystalPhase instance
-
-argument
-- lattice   :   Lattice instance
-- spacegroup:   string, space group
-- phasename :   string, name of the phase
-
-return  --  CrystalPhase instance
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        replaceStructureModel(thefit, - modeltuplelist, - cindex='all') -

        -         		source code  -
        - - 
        -
-Replace the structure model inside a Fit object
-
-Argument:
-- thefit    :   Fit instance
-- modeltuple:   list 3-tuples:  (Lattice, List of Atoms, str/Space group)
-- cindex    :   int, or str/"all":  component
-
-Return      :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        initProfilePseudoVoigtIkedaCarpenter(sig0=0.0, - sig1=0.0, - sig2=0.0, - gam0=0.0, - gam1=0.0, - gam2=0.0) -

        -         		source code  -
        - - 
        -
-new and set up a Pseudo-Voig Ikeda-Carpenter peak profile instance
-
-argument
-- sig0  :   float,
-- sig1  :   float,
-- sig2  :   float,
-- gam0  :   float,
-- gam1  :   float,
-- gam2  :   float,
-- alph0 :   float,
-- beta0 :   float,
-- alph1 :   float
-- kappa :   float
-- resfname  :   string, resolution file name (default=None)
-- bank  :   integer, optional bank number in resolution file
-
-return  --   (PseudoVoigtIkedaCarpenter, ExponentialDecay) instance
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        initPseudoVoigtExpDSpacing(parameterdict=None, - peakrange=8.0, - sig0=0.0, - sig1=0.0, - sig2=0.0, - gam0=0.0, - gam1=0.0, - gam2=0.0) -

        -         		source code  -
        - - 
        -
-New and set up a PsuedoVoigt Exponent D-Spacing
-
-Prioty:
-
-argument
-- sig0  :   float,
-- sig1  :   float,
-- sig2  :   float,
-- gam0  :   float,
-- gam1  :   float,
-- gam2  :   float,
-- kappa :   float
-
-return  --   PseudoVoigtIkedaCarpenter instance
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        initPseudoVoigtExp(parameterdict=None, - peakrange=8.0, - sig0=0.0, - sig1=0.0, - sig2=0.0, - gam0=0.0, - gam1=0.0, - gam2=0.0) -

        -         		source code  -
        - - 
        -
-New and set up a PsuedoVoigt Exponent back-to-back
-
-argument
-- sig0  :   float,
-- sig1  :   float,
-- sig2  :   float,
-- gam0  :   float,
-- gam1  :   float,
-- gam2  :   float,
-
-return  --   PseudoVoigtIkedaCarpenter instance
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        initExponentialDecay(parameterdict=None, - alph0=0.0, - beta0=0.0, - alph1=0.0, - beta1=0.0) -

        -         		source code  -
        - - 
        -
-Initializae a Thermal Expoential-Decay Object
-
-Priority:   Data in parameterdict will override  
-
-Argument:
-- parameterdict :   dictionary
-- alph0     :   float,
-- beta0     :   float,
-- alph1     :   float,
-- beta1     :   float,
-
-Return      :   ExpDecayFunction object
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        initThermalExponentialDecay(parameterdict=None, - alph0=0.0, - beta0=0.0, - alph1=0.0, - beta1=0.0, - alph0t=0.0, - beta0t=0.0, - alph1t=0.0, - beta1t=0.0) -

        -         		source code  -
        - - 
        -
-Initializae a Thermal Expoential-Decay Object
-
-Priority:   Data in parameterdict will override  
-
-Argument:
-- parameterdict :   dictionary
-- alph0     :   float,
-- beta0     :   float,
-- alph1     :   float,
-- beta1     :   float,
-- alph0t    :   float,
-- beta0t    :   float,
-- alph1t    :   float,
-- beta1t    :   float,
-
-Return      :   ThermalExpDecayFunction object
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        initCylindricalAbsorptionCorrection(parameterdict=None, - abs1=0.0, - abs2=0.0) -

        -         		source code  -
        - - 
        -
-Initialize and set up an Absorption-Correction object
-
-Arguments:
-- parameterdict :   dictionary
-
-Return          :   AbsorptionCorrection instance
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        set2ThetaSymmetricPeakProfile(prof, - peakrange, - u=1.0, - v=1.0, - w=1.0, - x=1.0, - y=1.0, - resfile=None) -

        -         		source code  -
        - - 
        -
-set up a 2-theta symmetric peak profile
-
-argument:
-- peakrange :   float,
-- u
-- v
-- w
-- x
-- y
-- resfile   :   string, file name of resolution file
-
-return  --  None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        initProfileGaussian(peakrange=8.0, - u=1.0, - v=1.0, - w=1.0, - x=0.0, - y=0.0) -

        -         		source code  -
        - -

        initalize and set up a Gaussian PeakProfile instance

        - return -- GaussianProfile -
        -
        -
        -
        - -
        - -
        - - -
        -

        initProfilePseudoVoigt(parameterdict=None, - peakrange=8.0, - u=1.0, - v=1.0, - w=1.0, - x=0.0, - y=0.0, - eta0=1.0) -

        -         		source code  -
        - - 
        -
-initialize and set up a Pseudo Voigt Peak Profile instance
-
-Arguements:
-- parameterdict :   dictionary
-
-return  --  PseudoVoigtProfile
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        initProfileTCHPseudoVoigt(parameterdict=None, - peakrange=8.0, - u=1.0, - v=1.0, - w=1.0, - x=0.0, - y=0.0) -

        -         		source code  -
        - - 
        -
-initialize and set up a Thomas-Cox-Hasting (TCH) Pseudo Voigt Peak Profile instance
-
-Arguements:
-- parameterdict :   dictionary
-
-return  --  PseudoVoigtProfile
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        initProfileSplitPseudoVoigt(parameterdict=None, - peakrange=8.0) -

        -         		source code  -
        - - 
        -
-initialize and set up a Thomas-Cox-Hasting (TCH) Pseudo Voigt Peak Profile instance
-
-Arguements:
-- parameterdict :   dictionary
-
-return  --  PseudoVoigtProfile
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        genPeakProfile(peakprofilename, - parameterdict) -

        -         		source code  -
        - - 
        -Generate a proper PeakProfile object according to some given name
-
-Argument:
-- peakprofilename   :   string, name of peak profile
-- parameterdict     :   dictionary, parameter for init the peak profile
-
-Return              :   Rietveld PeakProfile instance
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        genFit(instrument, - phaseslist, - experimentslist=None) -

        -         		source code  -
        - - 
        -Generate a Fit instance (Feature fixed)
-
-Arguement:
-- instrument        :   Instrument instance
-- phaseslist        :   List of diffpy.srrietvel.Phase
-- experimentslist   :   list, of list of measurements
-
-Return              :   diffpy.srrietvel.Fit
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        addComponent(fit, - pattern, - phases, - background=None, - bkgdvaluelist=None, - bkgdorigin=7000.0, - peakprofile=None, - expdecay=None) -

        -         		source code  -
        - - 
        -
-generate a RietveldComponent to a Fit instance
-
-arguments
-- pattern       :   Pattern instance
-- phases        :   list of Phase instance
-- background    :   Background instance
-- bkgdvaluelist :   list of 2-tuple/float (defualt=None)
-                    1-tuple: b1, b2, ....
-                    2-tuple: (tof1, b1), (tof2, b2), ... 
-- bkgdorigin    :   float, polynomial background origin
-- peakprofile   :   diffpy.rietveldapi.PeakProfile instance (default=None)
-- expdecay      :   diffpy.rietveldapi.ExpDecayFunction instance (default=None)
-
-return  --  RietveldComponent
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        locateRefinableParameter(startobj, - paraname, - info=None) -

        -         		source code  -
        - - 
        -
-locate the parent object of a specific refinable parameter
-
-arguments
-startobj    :   object to search for a parameter of it or in the object belonged to it
-paraname    :   string, name of parameter
-info        :   string, some additional information for this parameter in order to avoid
-                two parameters with the same/similar name
-
-return  --  ???
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        checkMust(fit) -

        -         		source code  -
        - - 
        -
-check a list of important parameters that must be set right!
-
-argument
-- fit   :   Fit instance
-
-return  --  Boolean
-
-
        -
        -
        -
        -
        -
        - - - - - - -
        - - - - - -
        Variables Details[hide private]
        -
        - -
        - -
        -

        myEngine

        - -
        -
        -
        -
        Value:
        - 
        -<diffpy.srrietveld.refinebackend.RietveldEngine instance at 0xb7ac124c\
->
-
        -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:22 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.midscript-pysrc.html b/static_root/doc/srrietveld/developers/srrietveld.midscript-pysrc.html deleted file mode 100644 index 982bb188..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.midscript-pysrc.html +++ /dev/null @@ -1,1717 +0,0 @@ - - - - - srrietveld.midscript - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module midscript - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        -

        Source Code for Module srrietveld.midscript

        -
        -   1  ############################################################################## 
-   2  # 
-   3  # diffpy.srrietveld by DANSE Diffraction group 
-   4  #                   Simon J. L. Billinge 
-   5  #                   (c) 2008 Trustees of the Columbia University 
-   6  #                   in the City of New York.  All rights reserved. 
-   7  # 
-   8  # File coded by:    Wenduo Zhou 
-   9  # 
-  10  # See AUTHORS.txt for a list of people who contributed. 
-  11  # See LICENSE.txt for license information. 
-  12  # 
-  13  ############################################################################## 
-  14   
-  15  """ 
-  16  container for a series of middle-level API supporting end-user scripts 
-  17  these API are NOT defined in standard diffpy.rietveldapi 
-  18  they are in the mode of conceptual testing and subject to major modification 
-  19   
-  20  External Methods List: 
-  21    - initTCHProfilePseudoVoigt(parameterdict=None, peakrange=8.0, u=1.0, v=1.0, w=1.0, x=0.0, y=0.0) 
-  22    - getPatterns(fit): 
-  23  """ 
-  24   
-  25  __id__ = "$Id: midscript.py 2918 2009-03-18 19:26:39Z wdzhou $" 
-  26   
-  27  from    diffpy.refinementapi.errors         import FitConfigurationError 
-  28  from    diffpy.refinementapi.exceptiontools import verifyType 
-  29  from    diffpy.srrietveld                          import * 
-  30   
-  31  # Suite 1: Pattern Related 
-
          32 -def getPatterns(fit): 
-
          33      """ 
-  34      Get all the patterns of a Fit instance 
-  35   
-  36      Argument     
-  37      - fit   :   Fit instance 
-  38   
-  39      Return  :   list of Patterns 
-  40      """ 
-  41      patlist = [] 
-  42   
-  43      numcomp = fit.getNumComponents() 
-  44      for c in xrange(numcomp): 
-  45          comp = fit.getComponent(c) 
-  46          pat  = comp.getPattern() 
-  47          patlist.append(pat) 
-  48   
-  49      return patlist 
-
          50   
-  51   
-
          52 -def setPattern(pat, dfname, parser): 
-
          53      """ 
-  54      basic functions to set up a Pattern 
-  55   
-  56      argument: 
-  57      - pat       :   Pattern instance 
-  58      - dfname    :   string, data file name 
-  59      - parser    :   Parser() instance 
-  60       
-  61      return  --  None 
-  62      """ 
-  63      PT = myEngine.getRietveldEngineModule("patterns") 
-  64      verifyType(pat, PT.DiffractionPattern) 
-  65   
-  66      # import and parse data 
-  67      try: 
-  68          pat.loadData(dfname, parser) 
-  69      except IOError, err: 
-  70          print "%-50s"% (err) 
-  71          print "File %-15s Cannot be Loaded Correcctly"% (dfname) 
-  72          pat.rietveldStatus = False 
-  73   
-  74      return None 
-
          75   
-  76   
-
          77 -def mapStructure(sourcefit, targetfit): 
-
          78      """ 
-  79      Map the strcture parameters from a Fit instance to another instance 
-  80   
-  81      Requirement: 
-  82      * source-Fit and target-Fit have the same Fit structure and same  
-  83        Crystal structure 
-  84   
-  85      Argument: 
-  86      - sourcefit :   Fit instance 
-  87      - targetfit :   Fit instance 
-  88   
-  89      Return      :   None 
-  90      """ 
-  91      # FIXME  Not Optimized for Multiple Bank 
-  92      numcomp = sourcefit.getNumComponents() 
-  93      for cindex in xrange(numcomp): 
-  94          scomp = sourcefit.getComponent(cindex) 
-  95          tcomp = targetfit.getComponent(cindex) 
-  96          numphase = scomp.getNumPhases() 
-  97          for pindex in xrange(numphase): 
-  98              sphase = scomp.getPhase(pindex) 
-  99              tphase = tcomp.getPhase(pindex) 
- 100              # 1. Lattice 
- 101              slattice = sphase.getLattice() 
- 102              tlattice = tphase.getLattice() 
- 103              slattice.mapTo(tlattice) 
- 104   
- 105              # 2. Atoms 
- 106              numatom = sphase.getNumAtoms() 
- 107              for aindex in xrange(numatom): 
- 108                  satom = sphase.getAtom(aindex) 
- 109                  tatom = tphase.getAtom(aindex) 
- 110                  satom.mapTo(tatom) 
- 111   
- 112                  # ADP 
- 113                  sadp = satom.getADP() 
- 114                  tadp = tatom.getADP() 
- 115                  sadp.mapTo(tadp) 
- 116              # LOOP-OVER: for aindex in xrange(numatom) 
- 117          # LOOP-OVER: for pindex in xrange(numphase) 
- 118      # LOOP-OVER: for cindex in xrange(numcomp) 
- 119   
- 120      return 
-
         121   
- 122   
-
         123 -def initTOFPattern(dfname, parser, bank=1, dangle=None, excludedregions=None,  
- 124      dtt1=None, dtt2=None, zshift=0.0, xcross=0.0, width=0.0): 
-
         125      """ 
- 126      initialize and set up a TOF pattern with all necessary parameters 
- 127   
- 128      arguement 
- 129      - dfname            :   string, data file name 
- 130      - parser            :   Parser() instance 
- 131      - dangle            :   double, detector angle 
- 132      - bank              :   int, bank number (default=1) 
- 133      - excludedregions   :   list of 2-tuples (default=None): excluded region 
- 134      - dtt1              :   float (default=None) 
- 135      - dtt2              :   float (default=None) 
- 136      - resfile           :   resolution file (default=None) 
- 137   
- 138      return  --  TOFPattern instance 
- 139      """ 
- 140      PT = myEngine.getRietveldEngineModule("patterns") 
- 141   
- 142      # generate  
- 143      pat = PT.TOFPattern() 
- 144      # data 
- 145      pat.loadData(dfname, parser) 
- 146      # bank setup 
- 147      pat.setBank(bank) 
- 148   
- 149      pat.setValue("zshift", zshift)  
- 150      pat.setValue("dtt1",   dtt1) 
- 151      pat.setValue("dtt2",   dtt2) 
- 152      pat.setValue("xcross", xcross) 
- 153      pat.setValue("width",  width) 
- 154      pat.setDetectorAngle(dangle) 
- 155   
- 156      # setup the excluded region 
- 157      setExcludedRegion(pat, excludedregions) 
- 158   
- 159      return pat 
-
         160   
- 161   
-
         162 -def initThermalTOFPattern(dfname, parser, bank=1, dangle=None, excludedregions=None,  
- 163      dtt1=None, dtt2=None, zshift=0.0,  
- 164      dtt1t=None, dtt2t=None, zerot=0.0, xcross=None, width=None): 
-
         165      """ 
- 166      Initialize Thermal Neutron TOF Pattern 
- 167   
- 168      """ 
- 169      PT = myEngine.getRietveldEngineModule("patterns") 
- 170   
- 171      # generate  
- 172      pat = PT.ThermalNeutronTOFPattern() 
- 173      # data 
- 174      pat.loadData(dfname, parser) 
- 175      # bank and fixed instrument parameters setup 
- 176      pat.setBank(bank) 
- 177      pat.setDetectorAngle(dangle) 
- 178      # refinable parameter set up 
- 179      pat.setValue("zshift", zshift)  
- 180      pat.setValue("dtt1",   dtt1) 
- 181      pat.setValue("dtt2",   dtt2) 
- 182      pat.setValue("zerot", zerot) 
- 183      pat.setValue("dtt1t", dtt1t) 
- 184      pat.setValue("dtt2t", dtt2t) 
- 185      pat.setValue("xcross", xcross) 
- 186      pat.setValue("width", width) 
- 187      # setup the excluded region 
- 188      setExcludedRegion(pat, excludedregions) 
- 189   
- 190      return pat 
-
         191   
- 192   
-
         193 -def setCWPattern(pat, dfname, parser, wavelength, wavelength2=0.0, ratio=0.0,  
- 194      zshift=0.0, region=None): 
-
         195      """ 
- 196      set up a Constant Wavelength Pattern pattern with all necessary parameters 
- 197   
- 198      arguement 
- 199      - dfname        :   string, data file name 
- 200      - parser        :   Parser() instance 
- 201      - region        :   list of 2-tuples (default=None): refine region 
- 202      - wavelength    :   float, (first) wave length in A 
- 203      - wavelength2   :   float, 2nd wave length in A 
- 204      - resfile       :   resolution file (default=None) 
- 205   
- 206      return  --  None 
- 207      """ 
- 208      PT = myEngine.getRietveldEngineModule("patterns") 
- 209      verifyType(pat, PT.CWPattern) 
- 210   
- 211      # call base function 
- 212      setPattern(pat, dfname, parser) 
- 213   
- 214      # setup the excluded region 
- 215      if not region is None: 
- 216          verifyType(region, list) 
- 217          setRefineRegion(pat, region) 
- 218   
- 219      # set up the excluded region 
- 220      pat.setValue("zshift", zshift)  
- 221      # set up the wavelength information 
- 222      pat.setPrimaryWavelength(wavelength) 
- 223      pat.setValue("Lambda", wavelength) 
- 224      if wavelength2 is not None: 
- 225          pat.setSecondaryWavelength(wavelength2) 
- 226      else: 
- 227          ratio = 0.0 
- 228      pat.setIntensityRatio(ratio) 
- 229   
- 230      return None 
-
         231   
- 232   
-
         233 -def initCWXrayPattern(dfname, parser, wavelength, wavelength2=0.0, ratio=0.0,  
- 234      zshift=0.0, region=None, resfname=None): 
-
         235      """ 
- 236      initalize and set up a constant wavelength X-ray pattern with all necessary parameters 
- 237   
- 238      arguement 
- 239      - dfname        :   string, data file name 
- 240      - parser        :   Parser() instance 
- 241      - region        :   list of 2-tuples (default=None): refine region 
- 242      - wavelength    :   float, (first) wave length in A 
- 243      - wavelength2   :   float, 2nd wave length in A 
- 244      - resfile       :   resolution file (default=None) 
- 245   
- 246      return  --  CWXrayPattern instance 
- 247      """ 
- 248      PT = myEngine.getRietveldEngineModule("patterns") 
- 249   
- 250      pat = PT.CWXPattern() 
- 251   
- 252      setCWPattern(pat, dfname, parser, wavelength, wavelength2, ratio, zshift, region) 
- 253   
- 254      return pat 
-
         255   
- 256   
-
         257 -def initCWNeutronPattern(dfname, parser, wavelength, wavelength2=0.0, ratio=0.0,  
- 258      zshift=0.0, region=None, resfname=None): 
-
         259      """ 
- 260      initialize and set up a constant wavelength neutron pattern with all necessary parameters 
- 261   
- 262      arguement 
- 263      - dfname        :   string, data file name 
- 264      - parser        :   Parser() instance 
- 265      - region        :   list of 2-tuples (default=None): refine region 
- 266      - wavelength    :   float, (first) wave length in A 
- 267      - wavelength2   :   float, 2nd wave length in A 
- 268      - resfile       :   resolution file (default=None) 
- 269   
- 270      return  --  CWNeutronPattern instance 
- 271      """ 
- 272      PT = myEngine.getRietveldEngineModule("patterns") 
- 273   
- 274      pat = PT.CWNPattern() 
- 275   
- 276      setCWPattern(pat, dfname, parser, wavelength, wavelength2, ratio, zshift, region) 
- 277       
- 278      return pat 
-
         279   
- 280   
-
         281 -def initBackground(backgroundType, backgroundPoints): 
-
         282      """ 
- 283      initialize a Background instance and set value to it 
- 284      """ 
- 285      if backgroundType == "Polynomial": 
- 286          background = initPolynomialBackground(backgroundPoints) 
- 287      elif backgroundType == "Interpolated Linear": 
- 288          background = initInterpolatedBackground(backgroundPoints, "linear") 
- 289      elif backgroundType == "Interpolated Cubic": 
- 290          background = initInterpolatedBackground(backgroundPoints, "cubic") 
- 291      else: 
- 292          raise NotImplementedError("background type = %-20s not defined" %(backgroundType)) 
- 293   
- 294      return background 
-
         295   
- 296   
-
         297 -def initPolynomialBackground(backgroundPoints, order=12): 
-
         298      """ 
- 299      initialze a Polynomial background 
- 300   
- 301      backgroundPoints    :   list of float 
- 302   
- 303      return              :   PolynomialBackground instance 
- 304      """ 
- 305      BKGD = myEngine.getRietveldEngineModule("backgrounds") 
- 306   
- 307      # 1. Determine the order 
- 308      numpoints = len(backgroundPoints) 
- 309      if numpoints > order+1: 
- 310          errmsg  = "Given background points number is larger than desired polynomial order\n" 
- 311          errmsg += "Given order = %-5s,  Given Num Points = %-30s\n"% (order, numpoints) 
- 312          errmsg += "Input Points: %-40s"% (backgroundPoints) 
- 313          raise FitConfigurationError(errmsg) 
- 314       
- 315      # 2. Generate background and set up origin 
- 316      bkgd = BKGD.PolynomialBackground(order) 
- 317      bkgd.setOrigin(backgroundPoints[0]) 
- 318   
- 319      # setup the background 
- 320      for bindex in xrange(1, numpoints): 
- 321          parname = "b"+str(bindex) 
- 322          bkgd.setValue(parname, backgroundPoints[bindex]) 
- 323   
- 324      return bkgd 
-
         325   
- 326   
-
         327 -def initInterpolatedBackground(backgroundpoints, btype="linear"): 
-
         328      """ 
- 329      user will use the background interpolated from a list of user-selected  
- 330      background points 
- 331   
- 332      argument 
- 333      - backgroundpoints  :   2D numpy array or a list of 2 (or more) tuples  
- 334                              as backgroundpoints[x][0] is the position 
- 335                              and backgroundpoints[x][1] is the background 
- 336      - btype             :   string, background type 
- 337   
- 338      return  --  a Background instance 
- 339      """ 
- 340      BKGD = myEngine.getRietveldEngineModule("backgrounds") 
- 341       
- 342      background = BKGD.InterpolatedBackground(btype) 
- 343      background.addBackgroundPoints(backgroundpoints) 
- 344   
- 345      return background 
-
         346   
- 347   
-
         348 -def setExcludedRegion(pattern, excludedregionslist): 
-
         349      """ 
- 350      Set excluded regions to a pattern 
- 351   
- 352      Argument: 
- 353      - pattern               :   diffpy.rietveldapi.DiffractionPattern 
- 354      - excludedregionslist   :   list of dict ["Begin", "End"] 
- 355   
- 356      Return                  :   None 
- 357      """ 
- 358      if excludedregionslist is None: 
- 359          return  
- 360   
- 361      if not isinstance(excludedregionslist, list): 
- 362          errmsg = "Input Incorrect Type" 
- 363          raise FitConfigurationError(errmsg) 
- 364   
- 365      sortedlist = sorted(excludedregionslist) 
- 366   
- 367      for regiondict in sortedlist: 
- 368          bound = (regiondict["Begin"], regiondict["End"]) 
- 369          pattern.addExcludedRegion(bound) 
- 370   
- 371      return 
-
         372   
- 373   
-
         374 -def setRefineRegion(pattern, regionlist): 
-
         375      """ 
- 376      user defines the region to refine in a more directed manner than  
- 377      defining excluded region 
- 378   
- 379      The refine regions (i.e., excluded regions) defined before will be removed 
- 380      by this method 
- 381   
- 382      if regionlist = empty list:    region to be refined 
- 383       
- 384      argument 
- 385      - parentobj :   A RietveldComponent or Pattern instance 
- 386                      to hold this diffraction data 
- 387      - regionlist:   2D numpy array or a list of 2 (or more) tuples 
- 388                      as the region to refine 
- 389   
- 390      return  --  None 
- 391      """ 
- 392      raise NotImplementedError("This function is not tested") 
- 393      excludedregion = [] 
- 394      for rindex in xrange(len(regionlist)+1): 
- 395   
- 396          # low limit 
- 397          if rindex == 0: 
- 398              low = 0.0 
- 399          else: 
- 400              low = regionlist[rindex-1][1] 
- 401          # uplimit 
- 402          if rindex == len(regionlist): 
- 403              high = 1.0E10 
- 404          else: 
- 405              high = regionlist[rindex][0] 
- 406          # add 
- 407          excludedregion.append( (low, high) ) 
- 408   
- 409      # End -- for rindex in xrange(len(regionlist)+1) 
- 410   
- 411      pattern.setExcludedRegion(excludedregion) 
- 412   
- 413      return 
-
         414   
- 415   
-
         416 -def reloadData(myfit, datafilename, bankid = None): 
-
         417      """ 
- 418      Load another data file to current Fit instance.  
- 419      If bankid is given, data file will be set to specific bank. 
- 420      Otherwise, the datafilename will be set to all banks/components 
- 421   
- 422      Argument: 
- 423      - myfit         :   Fit instance 
- 424      - datafilename  :   str 
- 425      - bankid        :   int 
- 426   
- 427      Return          :   None 
- 428      """ 
- 429      # FIXME:  Only the XYSigma Parser is supported at this moment 
- 430   
- 431      import diffpy.rietveldapi.patterns as APIP 
- 432   
- 433      PS = myEngine.getRietveldEngineModule("patternparsers") 
- 434   
- 435      bankfound = False 
- 436   
- 437      numcomp = myfit.getNumComponents() 
- 438      for cindex in xrange(numcomp): 
- 439          comp = myfit.getComponent(cindex) 
- 440          pat  = comp.getPattern() 
- 441          if bankid is None or isinstance(pat, APIP.CWPattern): 
- 442              # Default to set dame data files to all components 
- 443              pat.loadData(datafilename, PS.XYSigmaParser()) 
- 444              bankfound = True 
- 445          else: 
- 446              if pat.getBankNumber() == bankid: 
- 447                  pat.loadData(datafilename, PS.XYSigmaParser()) 
- 448                  bankfound = True 
- 449                  break 
- 450          # END-IF-ELSE 
- 451      # LOOP-OVER 
- 452   
- 453      if bankfound is False: 
- 454          errmsg = "Bank %-5s Cannot Be Found.  " % (bankid) 
- 455          raise NotImplementedError, errmsg 
- 456   
- 457      return 
-
         458   
- 459  # 
- 460  # Suite 2: Phase Related 
- 461  # 
-
         462 -def addAtom(phase, atomtype, fractcoordinate, occ, biso, baniso=None, atomtag="auto"): 
-
         463      """ 
- 464      add an atom to a phase instance 
- 465   
- 466      argument 
- 467      - phase             :   a Phase instance 
- 468      - atomtype          :   string, atom's type 
- 469      - fraccoordinate    :   list of float, (x,y,z) 
- 470      - occ               :   float, occupancy number 
- 471      - biso              :   float, isotropic thermal factor B 
- 472      - baniso            :   list/6-tuple/numpy array for B11, B22, B33, B12, B13, B23 
- 473      - atomtag           :   tag of the atom, default to be 'auto' 
- 474      """ 
- 475      AT = myEngine.getRietveldEngineModule("atoms") 
- 476      AP = myEngine.getRietveldEngineModule("adps") 
- 477   
- 478      def generateAtomTag(phase, atomtype): 
- 479          """ 
- 480          generate an individual atom tag against all the atoms included in the phase already 
- 481   
- 482          this method is NOT FOOLPROOF: 
- 483          Limitation 1: 
- 484          Malfunction Case: There are 2 Oxygen atoms.  The automatic mode for the first atom 
- 485          will label it with 'O1'.  If the user label the 2nd O atom with 'O1'.  In this level, 
- 486          this method cannot avoid the error 
- 487   
- 488          Limitatin 2: 
- 489          same type of atom number won't exceed 100 
- 490   
- 491          argument: 
- 492          - phase     :   diffpy.srrietveld Phase instance 
- 493          - atomtype  :   string, atom's type 
- 494   
- 495          return  --  string, new label 
- 496          """ 
- 497          count = 0 
- 498          numatom = phase.getNumAtoms() 
- 499   
- 500          for aindex in xrange(numatom): 
- 501              # search for all atoms 
- 502              atom = phase.getAtom(aindex) 
- 503              elem = atom.getElement() 
- 504              if elem == atomtype: 
- 505                  # atom with same type 
- 506                  tag = atom.getTag() 
- 507                  # find out the current maximum counting number 
- 508                  if '0' <= tag[-1] and tag[-1] <= '9': 
- 509                      # if the last letter is digit  
- 510                      if '0' < tag[-2] and tag[-2] <='9': 
- 511                          # if the 2nd last letter is digit 
- 512                          num = int(tag[-2]+tag[-1]) 
- 513                      else: 
- 514                          num = int(tag[-1]) 
- 515                  else: 
- 516                      num = 0 
- 517                  if num > count: 
- 518                      count = num 
- 519               
- 520          newnum = count + 1 
- 521          newtag = atomtype+str(newnum) 
- 522   
- 523          return newtag 
-
         524   
- 525   
- 526      try:  
- 527          # create an Atom object and set up its value 
- 528          newatom = AT.Atom(atomtype) 
- 529          phase.addAtom(newatom) 
- 530          # fractional position 
- 531          newatom.setValue("x", fractcoordinate[0]) 
- 532          newatom.setValue("y", fractcoordinate[1]) 
- 533          newatom.setValue("z", fractcoordinate[2]) 
- 534          newatom.setValue("occ", occ) 
- 535   
- 536          # set up the tag  
- 537          if atomtag == "auto": 
- 538              tag = generateAtomTag(phase, atomtype) 
- 539          else: 
- 540              tag = atomtag 
- 541          newatom.setTag(tag) 
- 542   
- 543          # Create a displacement factor for the atom 
- 544          if baniso is None: 
- 545              disp = AP.IsotropicAtomicDisplacementFactor()  
- 546          else: 
- 547              disp = AP.AnisotropicAtomicDisplacementFactor() 
- 548          newatom.setADP(disp) 
- 549           
- 550          # set Biso 
- 551          disp.setValue("Biso", biso) 
- 552          # set B11, B22, B33, B12, B13, B23 
- 553          if baniso is not None: 
- 554              disp.setValue("B11", baniso[0]) 
- 555              disp.setValue("B22", baniso[1]) 
- 556              disp.setValue("B33", baniso[2]) 
- 557              disp.setValue("B12", baniso[3]) 
- 558              disp.setValue("B13", baniso[4]) 
- 559              disp.setValue("B23", baniso[5]) 
- 560   
- 561      except IndexError, err: 
- 562          errmsg = "addAtom():  Input < biso > is incorrect.  biso = %-40s.  biso should contains 6 components"% \ 
- 563                   (biso) 
- 564          raise FitConfigurationError(errmsg) 
- 565   
- 566      return newatom 
- 567   
- 568   
-
         569 -def Cubic(a): 
-
         570      """ 
- 571      set the lattice to be cubic 
- 572   
- 573      argument 
- 574      - a :   float, lattice size in \AA 
- 575   
- 576      return  --  Lattice instance 
- 577      """ 
- 578      LT = myEngine.getRietveldEngineModule("Lattice") 
- 579   
- 580      # initialize a Lattice instance 
- 581      lattice =  LT.Lattice() 
- 582   
- 583      # set value 
- 584      lattice._a = a 
- 585      lattice._b = a 
- 586      lattice._c = a 
- 587      lattice._alpha = 90.0 
- 588      lattice._beta  = 90.0 
- 589      lattice._gamma = 90.0 
- 590      lattice.setValue("a", a) 
- 591      lattice.setValue("b", a) 
- 592      lattice.setValue("c", a) 
- 593      lattice.setValue("alpha", 90) 
- 594      lattice.setValue("beta" , 90) 
- 595      lattice.setValue("gamma", 90) 
- 596   
- 597      return lattice 
-
         598   
- 599   
-
         600 -def genLattice(a, b, c, alpha, beta, gamma): 
-
         601      """ 
- 602      generate a Lattice withtout further knowledge 
- 603   
- 604      Arguments: 
- 605      - a 
- 606      - b 
- 607      - c 
- 608      - alpha 
- 609      - beta 
- 610      - gamma 
- 611   
- 612      Return  :   diffpy.rietveldapi.Lattice 
- 613      """ 
- 614      Lattice = myEngine.getRietveldEngineModule("Lattice") 
- 615      # initialize a Lattice instance 
- 616      lattice =  Lattice.Lattice() 
- 617   
- 618      # set value 
- 619      lattice._a = a 
- 620      lattice._b = b 
- 621      lattice._c = c 
- 622      lattice._alpha = alpha 
- 623      lattice._beta  = beta 
- 624      lattice._gamma = gamma 
- 625      lattice.setValue("a", a) 
- 626      lattice.setValue("b", b) 
- 627      lattice.setValue("c", c) 
- 628      lattice.setValue("alpha", alpha) 
- 629      lattice.setValue("beta" , beta) 
- 630      lattice.setValue("gamma", gamma) 
- 631   
- 632      return lattice 
-
         633   
- 634   
-
         635 -def initCrystalPhase(lattice, spacegroup, phasename=""): 
-
         636      """ 
- 637      initialize and set a CrystalPhase instance 
- 638   
- 639      argument 
- 640      - lattice   :   Lattice instance 
- 641      - spacegroup:   string, space group 
- 642      - phasename :   string, name of the phase 
- 643   
- 644      return  --  CrystalPhase instance 
- 645      """ 
- 646      PHS = myEngine.getRietveldEngineModule("phases") 
- 647   
- 648      phase = PHS.CrystalPhase(phasename) 
- 649   
- 650      phase.setSpaceGroup(spacegroup) 
- 651   
- 652      phase.setLattice(lattice) 
- 653   
- 654      return phase 
-
         655   
- 656   
-
         657 -def replaceStructureModel(thefit, modeltuplelist , cindex="all"): 
-
         658      """ 
- 659      Replace the structure model inside a Fit object 
- 660   
- 661      Argument: 
- 662      - thefit    :   Fit instance 
- 663      - modeltuple:   list 3-tuples:  (Lattice, List of Atoms, str/Space group) 
- 664      - cindex    :   int, or str/"all":  component 
- 665   
- 666      Return      :   None 
- 667      """ 
- 668      # 1. get the list of componets to for new phase 
- 669      compslist = [] 
- 670      if cindex == "all": 
- 671          numcomps = thefit.getNumComponents() 
- 672          for lcindex in xrange(numcomps): 
- 673              comp = thefit.getComponent(lcindex) 
- 674              compslist.append(comp) 
- 675      else: 
- 676          comp = thefit.getComponent(cindex) 
- 677          compslist.append(comp) 
- 678   
- 679      # 2. replace  
- 680      for comp in compslist: 
- 681          numphase = comp.getNumPhases() 
- 682          for pindex in xrange(numphase): 
- 683              # 2.1 get phase and new structure model 
- 684              phase = comp.getPhase(pindex) 
- 685              newlattice, newatomslist, newspacegroup = modeltuplelist[pindex] 
- 686              # 2.2 replace space group 
- 687              phase.setSpaceGroup(newspacegroup) 
- 688              # 2.3 replace lattice 
- 689              phase.setLattice(newlattice) 
- 690              # 2.4 replace atom (delete old -> add new) 
- 691              numatoms = phase.getNumAtoms() 
- 692              curratomslist = [] 
- 693              for aindex in xrange(numatoms): 
- 694                  atom = phase.getAtom(aindex) 
- 695                  curratomslist.append(atom) 
- 696              for atom in curratomslist: 
- 697                  phase.removeAtom(atom) 
- 698              for atom in newatomslist: 
- 699                  if 0:   # 1547 
- 700                      print "\n+++++++++  1547    +++++++++++++\n" 
- 701                      print "%-20s  %-15s"% (atom._adp.__repr__(), atom._adp) 
- 702                      print "\n---------------------------\n" 
- 703                      print atom._sratom 
- 704                      exit(0) 
- 705                  phase.addAtom(atom) 
- 706          # LOOP-OVER:  for pindex in xrange(numphase) 
- 707      # LOOP-OVER:  for comp in composlist 
- 708   
- 709      return 
-
         710   
- 711  # 
- 712  # Suite 3: Peak Profie Related 
- 713  # 
-
         714 -def initProfilePseudoVoigtIkedaCarpenter(sig0=0.0, sig1=0.0, sig2=0.0, gam0=0.0, gam1=0.0, gam2=0.0): 
-
         715      """ 
- 716      new and set up a Pseudo-Voig Ikeda-Carpenter peak profile instance 
- 717   
- 718      argument 
- 719      - sig0  :   float, 
- 720      - sig1  :   float, 
- 721      - sig2  :   float, 
- 722      - gam0  :   float, 
- 723      - gam1  :   float, 
- 724      - gam2  :   float, 
- 725      - alph0 :   float, 
- 726      - beta0 :   float, 
- 727      - alph1 :   float 
- 728      - kappa :   float 
- 729      - resfname  :   string, resolution file name (default=None) 
- 730      - bank  :   integer, optional bank number in resolution file 
- 731   
- 732      return  --   (PseudoVoigtIkedaCarpenter, ExponentialDecay) instance 
- 733      """ 
- 734      PEK = myEngine.getRietveldEngineModule("peakprofiles") 
- 735      DEC = myEngine.getRietveldEngineModule("expdecayfunction") 
- 736   
- 737      # initialize peak profile 
- 738      prof = PEK.TOFPseudoVoigtIkedaCarpenter() 
- 739   
- 740      # set value 
- 741      prof.setValue("sigma0", sig0) 
- 742      prof.setValue("sigma1", sig1) 
- 743      prof.setValue("sigma2", sig2) 
- 744      prof.setValue("gamma0", gam0) 
- 745      prof.setValue("gamma1", gam1) 
- 746      prof.setValue("gamma2", gam2) 
- 747   
- 748      return prof 
-
         749   
- 750   
-
         751 -def initPseudoVoigtExpDSpacing(parameterdict=None, peakrange=8.0, sig0=0.0, sig1=0.0, sig2=0.0, \ 
- 752      gam0=0.0, gam1=0.0, gam2=0.0): 
-
         753      """ 
- 754      New and set up a PsuedoVoigt Exponent D-Spacing 
- 755   
- 756      Prioty: 
- 757   
- 758      argument 
- 759      - sig0  :   float, 
- 760      - sig1  :   float, 
- 761      - sig2  :   float, 
- 762      - gam0  :   float, 
- 763      - gam1  :   float, 
- 764      - gam2  :   float, 
- 765      - kappa :   float 
- 766   
- 767      return  --   PseudoVoigtIkedaCarpenter instance 
- 768      """ 
- 769      PEK = myEngine.getRietveldEngineModule("peakprofiles") 
- 770   
- 771      # 1. Initialize peak profile  
- 772      prof = PEK.PseudoVoigtExpDSpacing() 
- 773   
- 774      # 2. Override 
- 775      if parameterdict is not None: 
- 776          if parameterdict.has_key("sigma0"): 
- 777              sig0  = parameterdict["sigma0"] 
- 778          if parameterdict.has_key("sigma1"): 
- 779              sig1  = parameterdict["sigma1"] 
- 780          if parameterdict.has_key("sigma2"): 
- 781              sig2  = parameterdict["sigma2"] 
- 782          if parameterdict.has_key("gamma0"): 
- 783              gam0  = parameterdict["gamma0"] 
- 784          if parameterdict.has_key("gamma1"): 
- 785              gam1  = parameterdict["gamma1"] 
- 786          if parameterdict.has_key("gamma2"): 
- 787              gam2  = parameterdict["gamma2"] 
- 788   
- 789      # set value 
- 790      prof.setPeakRange(peakrange) 
- 791   
- 792      prof.setValue("sigma0", sig0) 
- 793      prof.setValue("sigma1", sig1) 
- 794      prof.setValue("sigma2", sig2) 
- 795      prof.setValue("gamma0", gam0) 
- 796      prof.setValue("gamma1", gam1) 
- 797      prof.setValue("gamma2", gam2) 
- 798   
- 799      return prof 
-
         800   
- 801   
-
         802 -def initPseudoVoigtExp(parameterdict=None, peakrange=8.0, sig0=0.0, sig1=0.0, sig2=0.0, \ 
- 803      gam0=0.0, gam1=0.0, gam2=0.0): 
-
         804      """ 
- 805      New and set up a PsuedoVoigt Exponent back-to-back 
- 806   
- 807      argument 
- 808      - sig0  :   float, 
- 809      - sig1  :   float, 
- 810      - sig2  :   float, 
- 811      - gam0  :   float, 
- 812      - gam1  :   float, 
- 813      - gam2  :   float, 
- 814   
- 815      return  --   PseudoVoigtIkedaCarpenter instance 
- 816      """ 
- 817      PEK = myEngine.getRietveldEngineModule("peakprofiles") 
- 818   
- 819      # 1. Initialize peak profile  
- 820      prof = PEK.PseudoVoigtExp() 
- 821   
- 822      # 2. Override 
- 823      if parameterdict is not None: 
- 824          if parameterdict.has_key("sigma0"): 
- 825              sig0  = parameterdict["sigma0"] 
- 826          if parameterdict.has_key("sigma1"): 
- 827              sig1  = parameterdict["sigma1"] 
- 828          if parameterdict.has_key("sigma2"): 
- 829              sig2  = parameterdict["sigma2"] 
- 830          if parameterdict.has_key("gamma0"): 
- 831              gam0  = parameterdict["gamma0"] 
- 832          if parameterdict.has_key("gamma1"): 
- 833              gam1  = parameterdict["gamma1"] 
- 834          if parameterdict.has_key("gamma2"): 
- 835              gam2  = parameterdict["gamma2"] 
- 836   
- 837      # set value 
- 838      prof.setPeakRange(peakrange) 
- 839   
- 840      prof.setValue("sigma0", sig0) 
- 841      prof.setValue("sigma1", sig1) 
- 842      prof.setValue("sigma2", sig2) 
- 843      prof.setValue("gamma0", gam0) 
- 844      prof.setValue("gamma1", gam1) 
- 845      prof.setValue("gamma2", gam2) 
- 846   
- 847      return prof 
-
         848   
- 849   
-
         850 -def initExponentialDecay(parameterdict=None, alph0=0.0, beta0=0.0, alph1=0.0, beta1=0.0): 
-
         851      """ 
- 852      Initializae a Thermal Expoential-Decay Object 
- 853   
- 854      Priority:   Data in parameterdict will override   
- 855   
- 856      Argument: 
- 857      - parameterdict :   dictionary 
- 858      - alph0     :   float, 
- 859      - beta0     :   float, 
- 860      - alph1     :   float, 
- 861      - beta1     :   float, 
- 862   
- 863      Return      :   ExpDecayFunction object 
- 864      """ 
- 865      DEC = myEngine.getRietveldEngineModule("expdecayfunction") 
- 866       
- 867      # 1. Parameter-Dictionary Overrides 
- 868      if parameterdict is not None: 
- 869          if parameterdict.has_key("alpha0"): 
- 870              alph0  = parameterdict["alpha0"] 
- 871          if parameterdict.has_key("alpha1"): 
- 872              alph1  = parameterdict["alpha1"] 
- 873          if parameterdict.has_key("beta0"): 
- 874              beta0  = parameterdict["beta0"] 
- 875          if parameterdict.has_key("beta1"): 
- 876              beta1  = parameterdict["beta1"] 
- 877   
- 878      # 2. generate an DecayFunction and set up the value 
- 879      expd = DEC.ExpDecayFunction() 
- 880   
- 881      expd.setValue("alpha0", alph0) 
- 882      expd.setValue("beta0", beta0) 
- 883      expd.setValue("alpha1", alph1) 
- 884      expd.setValue("beta1", beta1) 
- 885   
- 886      return expd 
-
         887   
- 888   
-
         889 -def initThermalExponentialDecay(parameterdict=None, alph0=0.0, beta0=0.0, alph1=0.0, beta1=0.0, \ 
- 890      alph0t=0.0, beta0t=0.0, alph1t=0.0, beta1t=0.0): 
-
         891      """ 
- 892      Initializae a Thermal Expoential-Decay Object 
- 893   
- 894      Priority:   Data in parameterdict will override   
- 895   
- 896      Argument: 
- 897      - parameterdict :   dictionary 
- 898      - alph0     :   float, 
- 899      - beta0     :   float, 
- 900      - alph1     :   float, 
- 901      - beta1     :   float, 
- 902      - alph0t    :   float, 
- 903      - beta0t    :   float, 
- 904      - alph1t    :   float, 
- 905      - beta1t    :   float, 
- 906   
- 907      Return      :   ThermalExpDecayFunction object 
- 908      """ 
- 909      DEC = myEngine.getRietveldEngineModule("expdecayfunction") 
- 910       
- 911      # 1. Parameter-Dictionary Overrides 
- 912      if parameterdict is not None: 
- 913          if parameterdict.has_key("alpha0"): 
- 914              alph0  = parameterdict["alpha0"] 
- 915          if parameterdict.has_key("alpha1"): 
- 916              alph1  = parameterdict["alpha1"] 
- 917          if parameterdict.has_key("alph0t"): 
- 918              alph0t = parameterdict["alph0t"] 
- 919          if parameterdict.has_key("alph1t"): 
- 920              alph1t = parameterdict["alph1t"] 
- 921          if parameterdict.has_key("beta0"): 
- 922              beta0  = parameterdict["beta0"] 
- 923          if parameterdict.has_key("beta1"): 
- 924              beta1  = parameterdict["beta1"] 
- 925          if parameterdict.has_key("beta0t"): 
- 926              beta0t = parameterdict["beta0t"] 
- 927          if parameterdict.has_key("beta1t"): 
- 928              beta1t = parameterdict["beta1t"] 
- 929   
- 930      # 2. generate an DecayFunction and set up the value 
- 931      expd = DEC.ThermalExpDecayFunction() 
- 932   
- 933      expd.setValue("alpha0", alph0) 
- 934      expd.setValue("beta0", beta0) 
- 935      expd.setValue("alpha1", alph1) 
- 936      expd.setValue("beta1", beta1) 
- 937      expd.setValue("alph0t", alph0t) 
- 938      expd.setValue("beta0t", beta0t) 
- 939      expd.setValue("alph1t", alph1t) 
- 940      expd.setValue("beta1t", beta1t) 
- 941   
- 942      return expd 
-
         943   
- 944   
-
         945 -def initCylindricalAbsorptionCorrection(parameterdict=None, abs1=0.0, abs2=0.0): 
-
         946      """ 
- 947      Initialize and set up an Absorption-Correction object 
- 948   
- 949      Arguments: 
- 950      - parameterdict :   dictionary 
- 951   
- 952      Return          :   AbsorptionCorrection instance 
- 953      """ 
- 954      EA = myEngine.getRietveldEngineModule("absorptioncorrections") 
- 955   
- 956      # 1. Init 
- 957      abscorrection = EA.CylindricalAbsorptionCorrection() 
- 958   
- 959      # 2. Override 
- 960      if parameterdict is not None: 
- 961          if 0:  # 1101 
- 962              print "1101:  keys = %-30s" %(parameterdict.keys()) 
- 963              sys.exit(0) 
- 964          if parameterdict.has_key("abs1"): 
- 965              abs1 = parameterdict["abs1"] 
- 966          if parameterdict.has_key("abs2"): 
- 967              abs2 = parameterdict["abs2"] 
- 968   
- 969      # 3. Setup 
- 970      abscorrection.setValue("abs1", abs1) 
- 971      abscorrection.setValue("abs2", abs2) 
- 972   
- 973      return abscorrection 
-
         974   
- 975   
-
         976 -def set2ThetaSymmetricPeakProfile(prof, peakrange, u=1.0, v=1.0, w=1.0, x=1.0, y=1.0, resfile=None): 
-
         977      """ 
- 978      set up a 2-theta symmetric peak profile 
- 979   
- 980      argument: 
- 981      - peakrange :   float, 
- 982      - u 
- 983      - v 
- 984      - w 
- 985      - x 
- 986      - y 
- 987      - resfile   :   string, file name of resolution file 
- 988   
- 989      return  --  None 
- 990      """ 
- 991      raise NotImplementedError("Not be implemented") 
- 992   
- 993      return 
-
         994   
- 995    
-
         996 -def initProfileGaussian(peakrange=8.0, u=1.0, v=1.0, w=1.0, x=0.0, y=0.0): 
-
         997      """ 
- 998      initalize and set up a Gaussian PeakProfile instance  
- 999   
-1000      return  --  GaussianProfile 
-1001      """ 
-1002      PEK = myEngine.getRietveldEngineModule("peakprofiles") 
-1003   
-1004      prof = PEK.GaussianProfile() 
-1005   
-1006      # 1. Set peak range 
-1007      prof.setPeakRange(peakrange) 
-1008   
-1009      # 2. Set all parameters 
-1010      prof.setValue("X", x) 
-1011      prof.setValue("Y", y) 
-1012      prof.setValue("U", u) 
-1013      prof.setValue("V", v) 
-1014      prof.setValue("W", w) 
-1015   
-1016      return prof 
-
        1017   
-1018   
-
        1019 -def initProfilePseudoVoigt(parameterdict=None, peakrange=8.0, u=1.0, v=1.0, w=1.0, x=0.0, y=0.0, eta0=1.0): 
-
        1020      """ 
-1021      initialize and set up a Pseudo Voigt Peak Profile instance 
-1022   
-1023      Arguements: 
-1024      - parameterdict :   dictionary 
-1025   
-1026      return  --  PseudoVoigtProfile 
-1027      """ 
-1028      PEK = myEngine.getRietveldEngineModule("peakprofiles") 
-1029   
-1030      prof = PEK.PseudoVoigtProfile() 
-1031   
-1032      # 1. Parameter Dictionary Override 
-1033      if parameterdict.has_key("W"): 
-1034          w = parameterdict["W"] 
-1035      if parameterdict.has_key("U"): 
-1036          u = parameterdict["U"] 
-1037      if parameterdict.has_key("V"): 
-1038          v = parameterdict["V"] 
-1039      if parameterdict.has_key("eta0"): 
-1040          eta0 = parameterdict["eta0"] 
-1041   
-1042      # 2. Set peak range 
-1043      prof.setPeakRange(peakrange) 
-1044   
-1045      # 3. Set all parameters 
-1046      prof.setValue("eta0", eta0) 
-1047      prof.setValue("X", x) 
-1048      prof.setValue("Y", y) 
-1049      prof.setValue("U", u) 
-1050      prof.setValue("V", v) 
-1051      prof.setValue("W", w) 
-1052   
-1053      return prof 
-
        1054   
-1055   
-
        1056 -def initProfileTCHPseudoVoigt(parameterdict=None, peakrange=8.0, u=1.0, v=1.0, w=1.0, x=0.0, y=0.0): 
-
        1057      """ 
-1058      initialize and set up a Thomas-Cox-Hasting (TCH) Pseudo Voigt Peak Profile instance 
-1059   
-1060      Arguements: 
-1061      - parameterdict :   dictionary 
-1062   
-1063      return  --  PseudoVoigtProfile 
-1064      """ 
-1065      PEK = myEngine.getRietveldEngineModule("peakprofiles") 
-1066   
-1067      prof = PEK.TCHPseudoVoigtProfile() 
-1068   
-1069      # 1. Parameter Dictionary Override 
-1070      if parameterdict.has_key("W"): 
-1071          w = parameterdict["W"] 
-1072      if parameterdict.has_key("U"): 
-1073          u = parameterdict["U"] 
-1074      if parameterdict.has_key("V"): 
-1075          v = parameterdict["V"] 
-1076      if parameterdict.has_key("X"): 
-1077          x = parameterdict["X"] 
-1078      if parameterdict.has_key("Y"): 
-1079          y = parameterdict["Y"] 
-1080      if parameterdict.has_key("Scale"): 
-1081          s = parameterdict["Scale"] 
-1082   
-1083      # 2. Set peak range 
-1084      prof.setPeakRange(peakrange) 
-1085   
-1086      # 3. Set all parameters 
-1087      prof.setValue("X", x) 
-1088      prof.setValue("Y", y) 
-1089      prof.setValue("U", u) 
-1090      prof.setValue("V", v) 
-1091      prof.setValue("W", w) 
-1092      prof.setValue("scale", s) 
-1093   
-1094      return prof 
-
        1095   
-1096   
-
        1097 -def initProfileSplitPseudoVoigt(parameterdict=None, peakrange=8.0): 
-
        1098      """ 
-1099      initialize and set up a Thomas-Cox-Hasting (TCH) Pseudo Voigt Peak Profile instance 
-1100   
-1101      Arguements: 
-1102      - parameterdict :   dictionary 
-1103   
-1104      return  --  PseudoVoigtProfile 
-1105      """ 
-1106      PEK = myEngine.getRietveldEngineModule("peakprofiles") 
-1107   
-1108      prof = PEK.SplitPseudoVoigtProfile() 
-1109   
-1110      # 1. Parameter Dictionary Override 
-1111      if parameterdict.has_key("WL"): 
-1112          wl = parameterdict["WL"] 
-1113      if parameterdict.has_key("UL"): 
-1114          ul = parameterdict["UL"] 
-1115      if parameterdict.has_key("VL"): 
-1116          vl = parameterdict["VL"] 
-1117      if parameterdict.has_key("XL"): 
-1118          xl = parameterdict["XL"] 
-1119      if parameterdict.has_key("Eta0L"): 
-1120          etal = parameterdict["Eta0L"] 
-1121      elif parameterdict.has_key("eta0L"): 
-1122          etal = parameterdict["eta0L"] 
-1123      else: 
-1124          etal = 0.0 
-1125   
-1126      if parameterdict.has_key("WR"): 
-1127          wr = parameterdict["WR"] 
-1128      if parameterdict.has_key("UR"): 
-1129          ur = parameterdict["UR"] 
-1130      if parameterdict.has_key("VR"): 
-1131          vr = parameterdict["VR"] 
-1132      if parameterdict.has_key("XR"): 
-1133          xr = parameterdict["XR"] 
-1134      if parameterdict.has_key("Eta0R"): 
-1135          etar = parameterdict["Eta0R"] 
-1136      elif parameterdict.has_key("eta0R"): 
-1137          etar = parameterdict["eta0R"] 
-1138      else: 
-1139          etar = 0.0 
-1140   
-1141      if parameterdict.has_key("Scale"): 
-1142          s = parameterdict["Scale"] 
-1143   
-1144      # 2. Set peak range 
-1145      prof.setPeakRange(peakrange) 
-1146   
-1147      # 3. Set all parameters 
-1148      prof.setValue("scale", s) 
-1149   
-1150      prof.setValue("XL", xl) 
-1151      prof.setValue("UL", ul) 
-1152      prof.setValue("VL", vl) 
-1153      prof.setValue("WL", wl) 
-1154      prof.setValue("eta0L",etal) 
-1155   
-1156      prof.setValue("XR", xr) 
-1157      prof.setValue("UR", ur) 
-1158      prof.setValue("VR", vr) 
-1159      prof.setValue("WR", wr) 
-1160      prof.setValue("eta0R",etar) 
-1161   
-1162      return prof 
-
        1163   
-1164   
-
        1165 -def genPeakProfile(peakprofilename, parameterdict): 
-
        1166      """ Generate a proper PeakProfile object according to some given name 
-1167   
-1168      Argument: 
-1169      - peakprofilename   :   string, name of peak profile 
-1170      - parameterdict     :   dictionary, parameter for init the peak profile 
-1171   
-1172      Return              :   Rietveld PeakProfile instance 
-1173      """ 
-1174      pname = peakprofilename.lower() 
-1175   
-1176      if pname == "pseudovoigt": 
-1177          # Constant Wavelength PseudoVoigt 
-1178          peakprofile = initProfilePseudoVoigt(parameterdict) 
-1179   
-1180          return peakprofile 
-1181   
-1182      elif pname == "pseudovoigtexp": 
-1183          # T.O.F Pseudo Voigt 
-1184          # 1. Get peak profile parameters 
-1185          peakprofile = initPseudoVoigtExp(parameterdict) 
-1186   
-1187          # 2. Get Absorption 
-1188          if parameterdict.has_key("absorption"): 
-1189              absorption = initCylindricalAbsorptionCorrection(parameterdict["absorption"]) 
-1190          else: 
-1191              absorption = None 
-1192   
-1193          # 3. Get ExpDecay 
-1194          if parameterdict.has_key("decay"): 
-1195              expdecay = initExponentialDecay(parameterdict["decay"]) 
-1196          else: 
-1197              wmsg = "Warning: PseudoVoigtExponential does not have " + \ 
-1198                      "Exponential Decay setup" 
-1199              print "Warning Message 252", wmsg 
-1200              expdecay = None 
-1201   
-1202          return ( (peakprofile, expdecay, absorption) ) 
-1203   
-1204      elif pname == "pseudovoigtexpdspacing": 
-1205          # 1. Get Peak Profile Parameters 
-1206          peakprofile = initPseudoVoigtExpDSpacing(parameterdict) 
-1207   
-1208          # 2. Get Absorption 
-1209          if parameterdict.has_key("absorption"): 
-1210              absorption = initCylindricalAbsorptionCorrection(parameterdict["absorption"]) 
-1211          else: 
-1212              absorption = None 
-1213   
-1214          # 3. Get ExpDecay 
-1215          if parameterdict.has_key("decay"): 
-1216              expdecay = initThermalExponentialDecay(parameterdict["decay"]) 
-1217          else: 
-1218              expdecay = None 
-1219   
-1220          return ( (peakprofile, expdecay, absorption) ) 
-1221   
-1222      elif pname == "tofpseudovoigtikedacarpenter": 
-1223          # T.O.F. Pseudo Voigt with Ikeda Carpenter 
-1224          # 1. Get Peak Profile Parameters 
-1225          sig0 = parameterdict["sigma0"] 
-1226          sig1 = parameterdict["sigma1"] 
-1227          sig2 = parameterdict["sigma2"] 
-1228          gam0 = parameterdict["gamma0"] 
-1229          gam1 = parameterdict["gamma1"] 
-1230          gam2 = parameterdict["gamma2"] 
-1231   
-1232          peakprofile = initProfilePseudoVoigtIkedaCarpenter(sig0, sig1, sig2, gam0, gam1, gam2) 
-1233   
-1234          # 2. Get Absorption 
-1235          if parameterdict.has_key("absorption"): 
-1236              absorption = initCylindricalAbsorptionCorrection(parameterdict["absorption"]) 
-1237          else: 
-1238              absorption = None 
-1239   
-1240          # 3. Get ExpDecay 
-1241          if parameterdict.has_key("decay"): 
-1242              expdecay = initExponentialDecay(parameterdict["decay"]) 
-1243          else: 
-1244              expdecay = None 
-1245   
-1246          return ( (peakprofile, expdecay, absorption) ) 
-1247   
-1248      elif pname == "tch pseudovoigt" or pname.count("tch") == 1: 
-1249   
-1250          peakprofile = initProfileTCHPseudoVoigt(parameterdict) 
-1251   
-1252          return peakprofile 
-1253   
-1254      elif pname == "split pseudovoigt" or pname == "splitpseudovoigtprofile": 
-1255   
-1256          peakprofile = initProfileSplitPseudoVoigt(parameterdict) 
-1257   
-1258          return peakprofile 
-1259           
-1260      else: 
-1261          errmsg = "Peak Profile < %-10s / %-10s > hasn't been Implemented"% (pname, peakprofilename) 
-1262          raise NotImplementedError(errmsg) 
-1263   
-1264      return 
-
        1265   
-1266  """ 
-1267  Suite 4: RietveldComponent and Fit Related 
-1268  """ 
-
        1269 -def genFit(instrument, phaseslist, experimentslist = None): 
-
        1270      """ Generate a Fit instance (Feature fixed) 
-1271   
-1272      Arguement: 
-1273      - instrument        :   Instrument instance 
-1274      - phaseslist        :   List of diffpy.srrietvel.Phase 
-1275      - experimentslist   :   list, of list of measurements 
-1276   
-1277      Return              :   diffpy.srrietvel.Fit 
-1278      """ 
-1279      FT = myEngine.getRietveldEngineModule("Fit") 
-1280   
-1281      # 1. Check input valid or not and Initialize Fit() 
-1282      if not isinstance(phaseslist, list) or len(phaseslist) == 0: 
-1283          errmsg = "No Phase Input:  Input = %-30s" % (phaseslist) 
-1284          raise NotImplementedError, errmsg 
-1285   
-1286      if experimentslist is None: 
-1287          experimentslist = [[]] 
-1288   
-1289      if len(experimentslist) == 0: 
-1290          errmsg = "No Experiment Set Up!  Find out in which situation, " + \ 
-1291                  "getFit() works well without experiment/measurement" 
-1292          raise NotImplementedError, errmsg 
-1293   
-1294      myFit = FT.Fit() 
-1295      myFit.setNumExperiments( len(experimentslist) ) 
-1296   
-1297      # 2. Generate RietveldComponent by each measurement in each experiment 
-1298      for expid in xrange( len(experimentslist) ): 
-1299          for measurement in experimentslist[expid]: 
-1300              # 2.1 Retrieve necessary information  
-1301              curbankno       = measurement.getBankNumber() 
-1302              curdatafname    = measurement.getDataFileName() 
-1303              curbackground   = measurement.getBackgroundDictionary() 
-1304              curmeasurerange = measurement.getMeasureRange() 
-1305              curexcregions   = measurement.getExcludedRegions() 
-1306   
-1307              # 2.2 Construct RietveldComponent 
-1308              component = instrument.genRietveldComponent(bankno=curbankno,    
-1309                  datafile=curdatafname, backgroundtuple=curbackground,   
-1310                  measurerange=curmeasurerange, excludedregionslist=curexcregions,  
-1311                  structure = phaseslist, myfit = myFit) 
-1312   
-1313              # 2.3 Set up experiment information 
-1314              myFit.setExperimentInformation(expid, component) 
-1315          # LOOP-OVER 
-1316      # LOOP-OVER :   for measurement in measurements 
-1317   
-1318      return myFit 
-
        1319   
-1320   
-
        1321 -def addComponent(fit, pattern, phases, background=None, bkgdvaluelist=None, bkgdorigin=7000.0, peakprofile=None, 
-1322      expdecay=None): 
-
        1323      """ 
-1324      generate a RietveldComponent to a Fit instance 
-1325   
-1326      arguments 
-1327      - pattern       :   Pattern instance 
-1328      - phases        :   list of Phase instance 
-1329      - background    :   Background instance 
-1330      - bkgdvaluelist :   list of 2-tuple/float (defualt=None) 
-1331                          1-tuple: b1, b2, .... 
-1332                          2-tuple: (tof1, b1), (tof2, b2), ...  
-1333      - bkgdorigin    :   float, polynomial background origin 
-1334      - peakprofile   :   diffpy.rietveldapi.PeakProfile instance (default=None) 
-1335      - expdecay      :   diffpy.rietveldapi.ExpDecayFunction instance (default=None) 
-1336   
-1337      return  --  RietveldComponent 
-1338      """ 
-1339      RC   = myEngine.getRietveldEngineModule("RietveldComponent") 
-1340      BKGD = myEngine.getRietveldEngineModule("backgrounds") 
-1341   
-1342      verifyType(phases, list) 
-1343       
-1344      # generate component 
-1345      comp = RC.RietveldComponent() 
-1346      fit.addComponent(comp) 
-1347   
-1348      # set up pattern 
-1349      comp.setPattern(pattern) 
-1350   
-1351      # add phases 
-1352      for phase in phases[:]: 
-1353          newphase = comp.addPhase(phase) 
-1354          if newphase != phase: 
-1355              phases.remove(phase) 
-1356              phases.append(newphase) 
-1357              # print "New Phase: new phase at %-20s"% (newphase.__repr__) 
-1358          else: 
-1359              pass 
-1360              # print "Old Phase: old=new phase at %-20s"% (newphase.__repr__) 
-1361   
-1362      # set the background 
-1363      if not background is None: 
-1364          comp.setBackground(background) 
-1365   
-1366          # set up the background properties 
-1367          if not bkgdvaluelist is None: 
-1368              verifyType(bkgdvaluelist, list) 
-1369              if isinstance(background, BKGD.PolynomialBackground): 
-1370                  # case 1: polynormial 
-1371                  verifyType(bkgdorigin, float) 
-1372                  background.setOrigin(bkgdorigin) 
-1373                  for bindex in xrange(len(bkgdvaluelist)): 
-1374                      parname = "b"+str(bindex+1) 
-1375                      background.setValue(parname, bkgdvaluelist[bindex]) 
-1376              elif isinstance(background, BKGD.InterpolatedBackground): 
-1377                  # case 2: user-selected background points 
-1378                  background.addBackgroundPoints(bkgdvaluelist) 
-1379              else: 
-1380                  errmsg = "addComponent():  Background of type %-20s has not been implemented"% \ 
-1381                      (type(background)) 
-1382                  raise NotImplementedError(errmsg) 
-1383   
-1384              # End ... if instance(background, ....) 
-1385          # End ... if bkgdvaluelist != None 
-1386      # End ... if background != None 
-1387   
-1388      # set peak profile 
-1389      if not peakprofile is None: 
-1390          for phase in phases: 
-1391              phase.setPeakProfile(peakprofile) 
-1392      # End -- if peakprofile != None: 
-1393   
-1394      # set expdecay 
-1395      if not expdecay is None: 
-1396          for phase in phases: 
-1397              phase.addExpDecayFunction(expdecay) 
-1398      # End -- if expdecay != None: 
-1399   
-1400      return comp 
-
        1401   
-1402   
-1403  # 
-1404  # Suite 5: Parameter Query 
-1405  # 
-
        1406 -def locateRefinableParameter(startobj, paraname, info=None): 
-
        1407      """ 
-1408      locate the parent object of a specific refinable parameter 
-1409   
-1410      arguments 
-1411      startobj    :   object to search for a parameter of it or in the object belonged to it 
-1412      paraname    :   string, name of parameter 
-1413      info        :   string, some additional information for this parameter in order to avoid 
-1414                      two parameters with the same/similar name 
-1415   
-1416      return  --  ??? 
-1417      """ 
-1418      raise NotImplementedError("Here") 
-
        1419   
-1420   
-1421  # 
-1422  # Suite 6: Foolproof 
-1423  # 
-
        1424 -def checkMust(fit): 
-
        1425      """ 
-1426      check a list of important parameters that must be set right! 
-1427   
-1428      argument 
-1429      - fit   :   Fit instance 
-1430       
-1431      return  --  Boolean 
-1432      """ 
-1433      pass 
-
        1434   
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        Module mixedphaseanalyzer

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        -
        -
-Figure out the starting value of the scale factor of
-    a mixed-phase structure model to a particular pattern
-
-Idea:
-1. with background properly subtracted (not necessary to be precise), 
-    the peak intensities can be easily compared
-2. the strongest peaks should be used to figure out the proper scale factor
-    for each phase
-3. interactively run each single phase model and compare to the diffraction
-    data
-4. interactively run the mixed-phase model and compare to the diffraction
-    data
-5. output the pcr file
-
-


        - - - - - - - - - - -
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        Source Code for Module srrietveld.mixedphaseanalyzer

        -
        - 1  ############################################################################## 
- 2  # 
- 3  # diffpy.srrietveld by DANSE Diffraction group 
- 4  #                   Simon J. L. Billinge 
- 5  #                   (c) 2008 Trustees of the Columbia University 
- 6  #                   in the City of New York.  All rights reserved. 
- 7  # 
- 8  # File coded by:    Wenduo Zhou 
- 9  # 
-10  # See AUTHORS.txt for a list of people who contributed. 
-11  # See LICENSE.txt for license information. 
-12  # 
-13  ############################################################################## 
-14   
-15  """ 
-16  Figure out the starting value of the scale factor of 
-17      a mixed-phase structure model to a particular pattern 
-18   
-19  Idea: 
-20  1. with background properly subtracted (not necessary to be precise),  
-21      the peak intensities can be easily compared 
-22  2. the strongest peaks should be used to figure out the proper scale factor 
-23      for each phase 
-24  3. interactively run each single phase model and compare to the diffraction 
-25      data 
-26  4. interactively run the mixed-phase model and compare to the diffraction 
-27      data 
-28  5. output the pcr file 
-29  """ 
-30  __id__ = "$Id: mixedphaseanalyzer.py 2792 2009-03-02 15:56:43Z wdzhou $" 
-31   
-32   
-
        33 -def searchPeaks(patterndata, numpeak): 
-
        34      """ 
-35      flag the peaks in a pattern data 
-36      """ 
-37      raise NotImplementedError("To Be Developed") 
-
        38   
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        Module modelrw

        source code

        -
        -
-Structure model reader and writer (import/export)
-model can be imported from/exported to 
-1. CIF
-2. PCR file
-3. ... ..
-
-Created On  2008/05/12
-
-


        - - - - - - - - - - - - - -
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        Classes[hide private]
        -
        -   - - ModelRW
        - base class for model read/write -
        -   - - CifRW
        - extended class for importing/exporting CIF file -
        - - - - - - - - - -
        - - - - - -
        Functions[hide private]
        -
        -   - - - - - - -
        importCIF(ciffname)
        - import a CIF file and export the model information...        		 - source code - -
        - -
        - - - - - - - - - -
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        Variables[hide private]
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        -   - - __id__ = '$Id: modelrw.py 2792 2009-03-02 15:56:43Z wdzhou $' -
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        importCIF(ciffname) -

        -         		source code  -
        - - 
        -
-import a CIF file and export the model information
-
-Argument
-ciffname    :   string, CIF file name
-
-Return  :   3-tuple
-            (lattice instance, string for spacegroup, list of dictionary for atoms information)
-
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        -
        - 1  ############################################################################## 
- 2  # 
- 3  # diffpy.srrietveld by DANSE Diffraction group 
- 4  #                   Simon J. L. Billinge 
- 5  #                   (c) 2008 Trustees of the Columbia University 
- 6  #                   in the City of New York.  All rights reserved. 
- 7  # 
- 8  # File coded by:    Wenduo Zhou 
- 9  # 
-10  # See AUTHORS.txt for a list of people who contributed. 
-11  # See LICENSE.txt for license information. 
-12  # 
-13  ############################################################################## 
-14  """ 
-15   Structure model reader and writer (import/export) 
-16   model can be imported from/exported to  
-17   1. CIF 
-18   2. PCR file 
-19   3. ... .. 
-20    
-21   Created On  2008/05/12 
-22  """ 
-23  __id__ = "$Id: modelrw.py 2792 2009-03-02 15:56:43Z wdzhou $" 
-24   
-25  import midscript as MS 
-26   
-
        27 -class ModelRW: 
-
        28      """ 
-29      base class for model read/write 
-30      """ 
-
        31 -    def __init__(self, filename): 
-
        32          """ 
-33          initialization 
-34          """ 
-35          raise NotImplementedError("To be implemented") 
-36   
-37          if not validFile(filename):  
-38              raise InputError(errmsg) 
-39   
-40          self._filename = filename 
-41   
-42          return 
-
        43   
-44   
-
        45 -    def exportModel(self): 
-
        46          """ 
-47          parse the file and export the model 
-48   
-49          Arguments: 
-50   
-51          Return      :   list of Phase instance 
-52          """ 
-53          if self.__class__.__name__ == "ModelRW": 
-54              errmsg = "exportModel is Virtual to class %-10s"% (self.__class__.__name__) 
-55              raise NotImplementedError(errmsg) 
-56   
-57          return 
-
        58   
-59   
-
        60 -class CifRW(ModelRW): 
-
        61      """ 
-62      extended class for importing/exporting CIF file 
-63      """ 
-
        64 -    def __init__(self): 
-
        65          """ 
-66          initialization 
-67          """ 
-68          ModelRW.__init__(self) 
-69   
-70          return 
-
        71   
-72   
-73  # external static functions 
-74   
-
        75 -def importCIF(ciffname): 
-
        76      """ 
-77      import a CIF file and export the model information 
-78   
-79      Argument 
-80      ciffname    :   string, CIF file name 
-81   
-82      Return  :   3-tuple 
-83                  (lattice instance, string for spacegroup, list of dictionary for atoms information) 
-84      """ 
-85      rtuple = CifRW().importModel(ciffname) 
-86   
-87      return rtuple 
-
        88   
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        - -

        Class CifRW

        source code

        -
        -ModelRW --+
-          |
-         CifRW
-
        - -
        -extended class for importing/exporting CIF file

        - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self)
        - initialization        		 - source code - -
        - -
            Inherited from ModelRW
        -   - - - - - - -
        exportModel(self)
        - parse the file and export the model        		 - source code - -
        - -
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        - - - - - -
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        __init__(self) -
        (Constructor) -

        -         		source code  -
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        -
        Known Subclasses:
        -
        - CifRW -
        - -
        -base class for model read/write

        - - - - - - - - - - - - - -
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        __init__(self, - filename)
        - initialization        		 - source code - -
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        exportModel(self)
        - parse the file and export the model        		 - source code - -
        - -
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        exportModel(self) -

        -         		source code  -
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        parse the file and export the model

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        - Utility class to monitor memory -
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-Check Garbage
-
-Exit execution if a garbage is not empty as intended
-
-Argument:
-- suddenstop    :   Boolean, 
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        Source Code for Module srrietveld.monitormem

        -
        -  1  #!/usr/bin/python 
-  2  ############################################################################## 
-  3  # 
-  4  # diffpy.srrietveld by DANSE Diffraction group 
-  5  #                   Simon J. L. Billinge 
-  6  #                   (c) 2008 Trustees of the Columbia University 
-  7  #                   in the City of New York.  All rights reserved. 
-  8  # 
-  9  # File coded by:    Wenduo Zhou 
- 10  # 
- 11  # See AUTHORS.txt for a list of people who contributed. 
- 12  # See LICENSE.txt for license information. 
- 13  # 
- 14  ############################################################################## 
- 15   
- 16  __id__ = "$Id: monitormem.py 2792 2009-03-02 15:56:43Z wdzhou $" 
- 17   
- 18  import subprocess 
- 19   
-
         20 -class MemoryMonitor(object): 
-
         21      """ 
- 22      Utility class to monitor memory 
- 23      """ 
- 24      refholder = [] 
- 25      initmem   = 0.0 
- 26      index     = 0.0 
- 27      logfilename = "memorylog.dat" 
- 28   
-
         29 -    def __init__(self, username=None): 
-
         30          """ 
- 31          Create new MemoryMonitor instance to view a user or current user 
- 32   
- 33          Argument: 
- 34          - username  :   str/None 
- 35   
- 36          Return      :   None 
- 37          """ 
- 38          # 1. Generate user name if necessary 
- 39          if username is None: 
- 40              import os 
- 41              output   = os.popen4("whoami") 
- 42              username = output[1].readlines()[0].strip() 
- 43              for op in output: 
- 44                  op.close() 
- 45   
- 46          # 2. give user name 
- 47          self.username = username 
- 48   
- 49          return 
-
         50   
- 51   
-
         52 -    def usage(self): 
-
         53          """ 
- 54          Return int containing memory used by user's processes. 
- 55          """ 
- 56          self.process = subprocess.Popen("ps -u %s -o rss | awk '{sum+=$1} END {print sum}'" % self.username, 
- 57                                          shell=True, 
- 58                                          stdout=subprocess.PIPE, 
- 59                                          ) 
- 60          self.stdout_list = self.process.communicate()[0].split('\n') 
- 61   
- 62          memusage = int(self.stdout_list[0]) 
- 63   
- 64          return memusage 
-
         65   
- 66   
-
         67 -    def reset(self): 
-
         68          """ 
- 69          Reset the class variables  
- 70          """ 
- 71          MemoryMonitor.refholder[:] = [] 
- 72          MemoryMonitor.initmem   = self.usage() 
- 73          MemoryMonitor.index     = 0.0 
- 74           
- 75          msg   = "%-5s   %-20s  %-20s\n"% (0, MemoryMonitor.initmem, 0.0) 
- 76          lfile = open(MemoryMonitor.logfilename, "w") 
- 77          lfile.write(msg) 
- 78          lfile.close() 
- 79   
- 80          return 
-
         81   
- 82   
-
         83 -    def report(self): 
-
         84          """ 
- 85          report result 
- 86          """ 
- 87          self.record(MemoryMonitor.index+0.05) 
- 88   
- 89          msgout  = "" 
- 90          for ref in MemoryMonitor.refholder: 
- 91              msgout += "%r\n"% (ref) 
- 92          print msgout 
- 93          print 
- 94   
- 95          import gc 
- 96          gc.collect() 
- 97          print "In garbage item number = %-5s\n"% (len(gc.garbage)) 
- 98          for g in gc.garbage: 
- 99              print "%-5s   %r"% (index, g) 
-100              index += 1 
-101   
-102          import diffpy.pyfullprof.core.fit as CF 
-103          refdict = CF.Fit.__refsbase__ 
-104          for key in sorted(refdict.keys()): 
-105              print "%-5s  %r"% (key, refdict[key]) 
-106   
-107          return 
-
        108   
-109   
-
        110 -    def record(self, index): 
-
        111          """ 
-112          Record the current memory 
-113          """ 
-114          if index <= MemoryMonitor.index: 
-115              MemoryMonitor.index += 1.0 
-116          else: 
-117              MemoryMonitor.index = index 
-118   
-119          memusage = self.usage() 
-120          msg = "%-5s    %-20s   %-20s\n"% (MemoryMonitor.index, memusage, memusage-MemoryMonitor.initmem) 
-121          lfile = open(MemoryMonitor.logfilename, "a") 
-122          lfile.write(msg) 
-123          lfile.close() 
-124   
-125          return 
-
        126   
-127   
-
        128 -    def register(self, objref): 
-
        129          """ 
-130          Register a  reference 
-131          """ 
-132          import weakref 
-133   
-134          MemoryMonitor.refholder.append( weakref.ref(objref) ) 
-135   
-136          print "Register  %r"% (MemoryMonitor.refholder[-1]) 
-137   
-138          return 
-
        139   
-140  # END-CLASS-DEF 
-141   
-142   
-
        143 -def garbageCheck(suddenstop=True): 
-
        144      """ 
-145      Check Garbage 
-146   
-147      Exit execution if a garbage is not empty as intended 
-148   
-149      Argument: 
-150      - suddenstop    :   Boolean,  
-151   
-152      Return  :   None 
-153      """ 
-154      import gc 
-155      gc.collect() 
-156   
-157      # 1. Message 
-158      msg = "Items In Garbage Collector = %-10s"% (len(gc.garbage)) 
-159      if len(gc.garbage) != 0: 
-160          index = 0 
-161          for g in gc.garbage: 
-162              msg += "%-5s   %r\n"% (index, g) 
-163              index += 1 
-164          msg += "----------------  Over --------------------" 
-165      # END-IF 
-166      print msg 
-167   
-168      # 2. Deal with garbage 
-169      if len(gc.garbage) != 0: 
-170          if suddenstop is True: 
-171              # A Raise Error 
-172              errmsg = "Garbage Collector Is Not Empty" 
-173              raise NotImplementedError(errmg) 
-174          else: 
-175              # B Clear 
-176              for g in gc.garbage: 
-177                  g.__dict__.clear() 
-178              gc.garbage[:] = [] 
-179      # END-IF 
-180   
-181      if 0: 
-182          # FIXME  Not used these functionality now 
-183          import diffpy.pyfullprof.Fit      as PF 
-184          import diffpy.pyfullprof.core.fit as CF 
-185           
-186          msg = "" 
-187           
-188          msg += "\n" 
-189          refdict = PF.Fit.__refsbase__ 
-190          for key in sorted(refdict.keys()): 
-191              msg += "%-5s  %r\n"% (key, refdict[key]) 
-192           
-193          msg += "\n" 
-194          refdict = CF.Fit.__refsbase__ 
-195          for key in sorted(refdict.keys()): 
-196              msg += "%-5s  %r\n"% (key, refdict[key]) 
-197           
-198          msg += "\n" 
-199          print msg 
-200   
-201      return 
-
        202   
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        Class MemoryMonitor

        source code

        -
        -object --+
-         |
-        MemoryMonitor
-
        - -
        -Utility class to monitor memory

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - username=None)
        - Create new MemoryMonitor instance to view a user or current user...        		 - source code - -
        - -
        -   - - - - - - -
        usage(self)
        - Return int containing memory used by user's processes.        		 - source code - -
        - -
        -   - - - - - - -
        reset(self)
        - Reset the class variables        		 - source code - -
        - -
        -   - - - - - - -
        report(self)
        - report result        		 - source code - -
        - -
        -   - - - - - - -
        record(self, - index)
        - Record the current memory        		 - source code - -
        - -
        -   - - - - - - -
        register(self, - objref)
        - Register a reference        		 - source code - -
        - -
        -

        Inherited from object: - __delattr__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__, - __str__ -

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        Class Variables[hide private]
        -
        -   - - refholder = [] -
        -   - - initmem = 0.0 -
        -   - - index = 0.0 -
        -   - - logfilename = 'memorylog.dat' -
        - - - - - - - - - -
        - - - - - -
        Properties[hide private]
        -
        -

        Inherited from object: - __class__ -

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        __init__(self, - username=None) -
        (Constructor) -

        -         		source code  -
        - - 
        -
-Create new MemoryMonitor instance to view a user or current user
-
-Argument:
-- username  :   str/None
-
-Return      :   None
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        Module parallelrefinecontrol

        source code

        -Refine a list of

        - - - - - - - - - - -
        - - - - - -
        Classes[hide private]
        -
        -   - - ParallelRefinementControl
        - Controllng class for refining many dataset in parallel -
        - - - - - - - - - - - - -
        - - - - - -
        Variables[hide private]
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        -   - - __id__ = '$Id: parallelrefinecontrol.py 2921 2009-03-20 15:43:... -
        -   - - _SCREENOUTPUT = True -
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        __id__

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        -'$Id: parallelrefinecontrol.py 2921 2009-03-20 15:43:13Z wdzhou $'
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        Source Code for Module srrietveld.parallelrefinecontrol

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2008 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Wenduo Zhou 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14   
- 15  """ 
- 16  Refine a list of  
- 17  """ 
- 18   
- 19  __id__ = "$Id: parallelrefinecontrol.py 2921 2009-03-20 15:43:13Z wdzhou $" 
- 20   
- 21  # FIXME - ParallelRefinementControl can be inherited from some base class with  
- 22  #         SequentialRefineCntrol 
- 23   
- 24  _SCREENOUTPUT = True 
- 25   
-
         27      """ Controllng class for refining many dataset in parallel 
- 28      """ 
-
         29 -    def __init__(self, instrument, datafilestructure, environparname, 
- 30              bkgdinfodict = None): 
-
         31          """ Initialization 
- 32   
- 33          Argument 
- 34          - instrument        :   Instrument 
- 35          - datafilestructure :   dictionary: key = data file name; value = (Crystal structure, value) 
- 36          - environparname    :   str 
- 37          - bkgdinfodict      :   dict 
- 38   
- 39          Return              :   None 
- 40          """ 
- 41          import copy 
- 42   
- 43          self._myInstrument      = instrument 
- 44          self._datafilestructure = copy.copy(datafilestructure) 
- 45          self._bkgdinfodict      = bkgdinfodict 
- 46          self._environparname    = environparname 
- 47          self._myRefineStrategy  = None 
- 48          self._savedirectory     = None 
- 49   
- 50          self._fitsPool = {} 
- 51          self._savedfilePool = {} 
- 52   
- 53          return 
-
         54   
- 55       
-
         56 -    def setRefineStrategy(self, refstr): 
-
         57          """ Set refinement strategy 
- 58   
- 59          Arguments: 
- 60          - refstr    :   RefineStrategy instance or None 
- 61   
- 62          Return      :   None 
- 63          """ 
- 64          self._myRefineStrategy = refstr 
- 65   
- 66          return 
-
         67   
- 68   
-
         69 -    def refine(self): 
-
         70          """ Refine all data files in parallel 
- 71   
- 72          Return      :   None 
- 73          """ 
- 74          import copy 
- 75          import os 
- 76          import refinestrategy   as RS 
- 77          import refinemanager    as RM 
- 78          import midscript        as MS 
- 79          import phasescript      as PU 
- 80          import diffpy.pyfullprof.Fit as FPF 
- 81   
- 82          # 1. prepare and set intermittent output  
- 83          processid = RM.getProcessID() 
- 84          self.directory = "seq"+processid 
- 85          os.mkdir(self.directory) 
- 86          os.mkdir(self.directory+"/FP") 
- 87          os.mkdir(self.directory+"/Proj") 
- 88   
- 89          # 2. refine 
- 90          for datafilename in sorted( self._datafilestructure.keys() ): 
- 91   
- 92              # 2.1 unpack 
- 93              thisstructure, thisenvparval = self._datafilestructure[datafilename] 
- 94               
- 95              # 2.2 generate a Fit instance 
- 96              # FIXME - Only support single experiment sequential fitting 
- 97              expmeasurelist = [] 
- 98              measurementslist = self._myInstrument.genMeasurement(datafilename) 
- 99              expmeasurelist.append( measurementslist ) 
-100   
-101              #  Set background if available 
-102              if len(measurementslist) == 1 and self._bkgdinfodict is not None: 
-103                  measurementslist[0].setBackground(self._bkgdinfodict["Type"],  
-104                          self._bkgdinfodict) 
-105              else: 
-106                  if len(measurementslist) > 1: 
-107                      errmsg = "# of Measurements = %-5s.  Cannot Handle Now" % \ 
-108                              (len(measurementslist)) 
-109                      raise NotImplementedError, errmsg 
-110                  # END-IF 
-111              # END-IF-ELSE 
-112   
-113              curFit = MS.genFit(self._myInstrument, [thisstructure], expmeasurelist) 
-114   
-115              # 2.3 Set up RefineManager and Refinement Strategy 
-116              myrefinemanager = RM.MultiStepRefineManager(curFit) 
-117              if self._myRefineStrategy is None: 
-118                  # using default refine strategy 
-119                  self._myRefineStrategy = RS.RefineStrategy() 
-120                  raise NotImplementedError("Contact developer to deal with this situation") 
-121   
-122              # 2.4 Refine and update current-Fit 
-123              refinedetail, processid = myrefinemanager.refine(self._myRefineStrategy) 
-124   
-125              # 2.5   Save refinement result for this step 
-126              # 2.5.1 Export phases parameters 
-127              # FIXME - Assume that all patterns have the same phases 
-128              component = curFit.getComponent(0) 
-129              numphases = component.getNumPhases() 
-130              phasedictlist = [] 
-131              for pindex in xrange(numphases): 
-132                  phase = component.getPhase(pindex) 
-133                  phasedict = PU.genPhaseDict(phase) 
-134                  phasedictlist.append(phasedict) 
-135   
-136              # 2.5.2 Save refinement manager to (1) project file (2) engine file (e.g., pcr, exp) 
-137              refinefilename = "refine"+str(thisenvparval)+".proj" 
-138              myrefinemanager.save(refinefilename) 
-139   
-140              enginefilename = "" 
-141              if isinstance(curFit, FPF.Fit): 
-142                  enginefilename = "refine" + str(thisenvparval) + ".pcr" 
-143                  curFit.saveToEngineFile(enginefilename) 
-144   
-145              # 2.5.3 Save into Fits Pool: save the Fit instance  
-146              refinehistory = myrefinemanager.getHistory() 
-147                 
-148              self._fitsPool[thisenvparval] = (curFit, refinedetail, refinehistory, phasedictlist) 
-149              self._savedfilePool[thisenvparval] = (refinefilename, enginefilename) 
-150   
-151              # 2.5.4 Remove data from saved Fit 
-152              rietnum = curFit.getNumComponents() 
-153              for cindex in xrange(rietnum): 
-154                  component = curFit.getComponent(cindex) 
-155                  pattern   = component.getPattern() 
-156                  pattern.unloadData() 
-157   
-158              # 2.5.5 Update the loop variables 
-159              prevfit = curFit 
-160              myrefinemanager = None 
-161   
-162              # 2.6 move directory to respository 
-163              cmd = "mv %-20s %-20s"% (processid, self.directory) 
-164              os.system(cmd) 
-165              cmd = "mv %-20s %-20s"% (refinefilename, self.directory+"/Proj") 
-166              os.system(cmd) 
-167              if isinstance(curFit, FPF.Fit): 
-168                  cmd = "mv %-20s %-20s"% (enginefilename, self.directory+"/FP") 
-169                  os.system(cmd) 
-170   
-171              # 2.7 Optional Output 
-172              if _SCREENOUTPUT is True: 
-173                  print "\n*********************   Sequential Refine Summary  ******************************" 
-174                  print "%-15s   %-60s"% (thisenvparval, refinedetail) 
-175                  print "***********************************************************************************\n" 
-176   
-177          # LOOP-OVER: for tup in self._dataSetTupList 
-178   
-179          return 
-
        180   
-181      # END-DEF refine(self, savefname="tempseq.proj") 
-182   
-183   
-
        184 -    def save(self, savefilename): 
-
        185          """ Save self to a pickle file 
-186   
-187          Arguement 
-188          - savefilename  :   str 
-189   
-190          Return          :   None 
-191          """ 
-192          # FIXME - It is exactly the same as sequentialrefinecntrol.save() 
-193          import pickle 
-194          import xmlgenerator as XMLG 
-195          import os 
-196   
-197          # 1. Process names and generate the result directory 
-198          savedirname = savefilename.split(".")[0].strip() 
-199          savexmlname = savedirname+".xml" 
-200          try: 
-201              os.mkdir(savedirname) 
-202          except OSError, err: 
-203              pass 
-204   
-205          # 2. Pickel save 
-206          # FIXME  It will be removed later ... 
-207          if savefilename is None: 
-208              savefilename = str(self._processid) 
-209          elif not isinstance(savefilename, str): 
-210              errmsg = "Input File Name %-20s Is Not String"% (savefilename) 
-211              raise FitConfigurationError(savefilename) 
-212   
-213          pfile = open(savefilename, "w") 
-214          pickle.dump(self, pfile)  
-215          pfile.close() 
-216   
-217          # 3. XML save 
-218          xmldict = {} 
-219          for parval in sorted(self._fitsPool.keys()): 
-220              curFit, refinedetail, refinehistory, phasedictlist = self._fitsPool[parval] 
-221              xmldict[parval] = {} 
-222              xmldict[parval]["Structure"]  = phasedictlist 
-223              xmldict[parval]["RefineInfo"] = refinedetail.toDict() 
-224   
-225              xmldict[parval]["SavedFile"]  = {} 
-226              xmldict[parval]["SavedFile"]["Proj"] = self._savedfilePool[parval][0] 
-227              xmldict[parval]["SavedFile"]["FP"]   = self._savedfilePool[parval][1] 
-228          # LOOP-OVER 
-229   
-230          seqxmlgen = XMLG.SeqFitRecordXMLGenerator(xmldict) 
-231          seqxmlgen.exportXML(savexmlname) 
-232   
-233          cmd = "mv %-10s %-10s"% (savexmlname, savedirname) 
-234          os.system(cmd) 
-235   
-236          # 4. Directory save 
-237   
-238          if self.directory is not None: 
-239              cmd = "mv %-15s %-15s"% (self.directory+"/FP", savedirname) 
-240              os.system(cmd) 
-241   
-242              cmd = "mv %-15s %-15s"% (self.directory+"/Proj", savedirname) 
-243              os.system(cmd) 
-244          # END-IF 
-245   
-246          return 
-
        247   
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        Class ParallelRefinementControl

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        -Controllng class for refining many dataset in parallel

        - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - instrument, - datafilestructure, - environparname, - bkgdinfodict=None)
        - Initialization...        		 - source code - -
        - -
        -   - - - - - - -
        setRefineStrategy(self, - refstr)
        - Set refinement strategy...        		 - source code - -
        - -
        -   - - - - - - -
        refine(self)
        - Refine all data files in parallel        		 - source code - -
        - -
        -   - - - - - - -
        save(self, - savefilename)
        - Save self to a pickle file...        		 - source code - -
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        Method Details[hide private]
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        __init__(self, - instrument, - datafilestructure, - environparname, - bkgdinfodict=None) -
        (Constructor) -

        -         		source code  -
        - - 
        -Initialization
-
-Argument
-- instrument        :   Instrument
-- datafilestructure :   dictionary: key = data file name; value = (Crystal structure, value)
-- environparname    :   str
-- bkgdinfodict      :   dict
-
-Return              :   None
-
-
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        - - -
        -

        setRefineStrategy(self, - refstr) -

        -         		source code  -
        - - 
        -Set refinement strategy
-
-Arguments:
-- refstr    :   RefineStrategy instance or None
-
-Return      :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        refine(self) -

        -         		source code  -
        - -

        Refine all data files in parallel

        - Return : None -
        -
        -
        -
        - -
        - -
        - - -
        -

        save(self, - savefilename) -

        -         		source code  -
        - - 
        -Save self to a pickle file
-
-Arguement
-- savefilename  :   str
-
-Return          :   None
-
-
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        - - Package srrietveld :: - Module phasescript - - - - - - -
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        -
        - -

        Module phasescript

        source code

        -
        -
-Script for dealing with structure phase
-
-Utility methods include:
--  genPhaseDict(phase)
-
-


        - - - - - - - - - - - - - - - - -
        - - - - - -
        Functions[hide private]
        -
        -   - - - - - - -
        getTuple(rietobj, - parname)
        - Get the value and uncertainty of a parameter in a Rietveld object...        		 - source code - -
        - -
        -   - - - - - - -
        genPhaseDict(phase)
        - Generate a standard Phase-Info-Dictionary...        		 - source code - -
        - -
        -   - - - - - - -
        genPhaseCIF(ciffilename='')
        - generate the branch for CIF file        		 - source code - -
        - -
        - - - - - - - - - -
        - - - - - -
        Variables[hide private]
        -
        -   - - __id__ = '$Id: phasescript.py 2792 2009-03-02 15:56:43Z wdzhou $' -
        - - - - - - -
        - - - - - -
        Function Details[hide private]
        -
        - -
        - -
        - - -
        -

        getTuple(rietobj, - parname) -

        -         		source code  -
        - - 
        -
-Get the value and uncertainty of a parameter in a Rietveld object
-
-Argument:
-- rietobj   :   Rietveld.Refinable object
-- parname   :   str
-
-Return      :   (float, float) = (value, uncertainty)
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        genPhaseDict(phase) -

        -         		source code  -
        - - 
        -
-Generate a standard Phase-Info-Dictionary
-
-Argument:
-- phase     :   diffpy.rietveldapi.Phase
-
-Return      :   Dictionary
-
-
        -
        -
        -
        -
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        Source Code for Module srrietveld.phasescript

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2008 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Wenduo Zhou 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14  """ 
- 15  Script for dealing with structure phase 
- 16   
- 17  Utility methods include: 
- 18  -  genPhaseDict(phase) 
- 19   
- 20  """ 
- 21  __id__ = "$Id: phasescript.py 2792 2009-03-02 15:56:43Z wdzhou $" 
- 22   
- 23   
-
         24 -def getTuple(rietobj, parname): 
-
         25      """ 
- 26      Get the value and uncertainty of a parameter in a Rietveld object 
- 27   
- 28      Argument: 
- 29      - rietobj   :   Rietveld.Refinable object 
- 30      - parname   :   str 
- 31   
- 32      Return      :   (float, float) = (value, uncertainty) 
- 33      """ 
- 34      parvalue = rietobj.getValue(parname) 
- 35      parsigma = rietobj.getUncertainty(parname) 
- 36   
- 37      return (parvalue, parsigma) 
-
         38   
- 39   
-
         40 -def genPhaseDict(phase): 
-
         41      """ 
- 42      Generate a standard Phase-Info-Dictionary 
- 43   
- 44      Argument: 
- 45      - phase     :   diffpy.rietveldapi.Phase 
- 46   
- 47      Return      :   Dictionary 
- 48      """ 
- 49      # 1. Initialize Dictionary and Some Phase Information 
- 50      phaseinfodict = {} 
- 51   
- 52      phaseinfodict["SpaceGroup"] = phase.getSpaceGroup() 
- 53      phaseinfodict["Type"]       = "User" 
- 54      phaseinfodict["Name"]       = phase.getName() 
- 55   
- 56      # 2. Lattice 
- 57      lattice = phase.getLattice() 
- 58      for paramname in lattice.getRefinableParameters(): 
- 59          phaseinfodict[paramname] = getTuple(lattice, paramname) 
- 60   
- 61      # 3. Atom 
- 62      phaseinfodict["ATOM"] = [] 
- 63      numatoms = phase.getNumAtoms() 
- 64      for aindex in xrange(numatoms): 
- 65   
- 66          # 1. Initialize and Get Some Necessary Information 
- 67          atom = phase.getAtom(aindex) 
- 68          element = atom.getElement() 
- 69          tag     = atom.getTag() 
- 70          adp     = atom.getADP() 
- 71   
- 72          # 2. Set Static Information 
- 73          atominfodict = {} 
- 74          atominfodict["Element"] = element 
- 75          atominfodict["Tag"]     = tag 
- 76   
- 77          # 3. Set Atom's Refinable 
- 78          for paramname in atom.getRefinableParameters(): 
- 79              atominfodict[paramname] = getTuple(atom, paramname) 
- 80   
- 81          # 4. Set ADP's Refinable 
- 82          for paramname in adp.getRefinableParameters(): 
- 83              atominfodict[paramname] = getTuple(adp, paramname) 
- 84   
- 85          phaseinfodict["ATOM"].append(atominfodict) 
- 86   
- 87      # LOOP-OVER: for aindex in xrange(numatoms) 
- 88   
- 89      return phaseinfodict 
-
         90   
- 91   
-
         92 -def genPhaseCIF(ciffilename = ""): 
-
         93      """ 
- 94      generate the branch for CIF file 
- 95      """ 
- 96      pha = self._rietxml.createElementNS("", "PHASE") 
- 97   
- 98      pha.setAttributeNS("", "Type", "CIF") 
- 99      pha.setAttributeNS("", "CifFile", "structure1.cif") 
-100   
-101      return pha 
-
        102   
-
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.plot2d-module.html b/static_root/doc/srrietveld/developers/srrietveld.plot2d-module.html deleted file mode 100644 index 9000b4af..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.plot2d-module.html +++ /dev/null @@ -1,656 +0,0 @@ - - - - - srrietveld.plot2d - - - - - - - - - - - - - - - - - - - - - - -
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        - - Package srrietveld :: - Module plot2d - - - - - - -
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        Module plot2d

        source code

        -
        -plot2d.py is in charge of plotting some 2D graph with 
-publication standard output
-
-created on 2007.09.27
-
-Main Client Method:
-    plot2D(plotset, unitx, unity, infolist, colorlist, stylelist, marklist):
-
-        plot a 2D graph for one or a coule of lines on a same graph
-
-        Arguments:
-        plotset         --  list of array, number of array = 2*line
-                            [x1, y1, x2, y2, ...], where xi, yi are
-                            lists containing the column data
-        unitx           --  string, information/unit of x-axis
-        unity           --  string, information/unit of y-axis
-        infolist        --  list  , label of each line (y1, y2, ... )  
-        colorlist       --  list  , string, color of each line (y1, y2, ... )
-        sytlelist       --  list  , string, style of each line (y1, y2, ... )
-        marklist        --  list  , string, mark  of each line (y1, y2, ... )
-
-        plotset :  Length = #Line * 2;
-        infolist, colorlist, stylelist, marklist: Length = #Line * 2
-
-Classes Definition
--  class PlotInfo2D
-   *  __init__(self, listx, listy, color="black", style="solid", mark="none", label="")
--  class Plot2D
-   *  __init__(self, stringx = "", stringy = "", plotlist=[])
-
-


        - - - - - - - - - - - - - - - - -
        - - - - - -
        Classes[hide private]
        -
        -   - - Plot2D
        - Class to handle plotting a 2D graph containing multiple lines... -
        -   - - PlotInfo2D
        - class PlotInfo2D contains the plot information for plotting a 2D figure... -
        -   - - PlotMatLib
        - Class PlotMatLib is dedicated to make plots by matplot lib... -
        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Functions[hide private]
        -
        -   - - - - - - -
        plotFit(fit)
        - Plot the patterns in a fit.        		 - source code - -
        - -
        -   - - - - - - -
        plotPattern(pat)
        - Plot a pattern.        		 - source code - -
        - -
        -   - - - - - - -
        _plotPattern(pat)
        - Plot the observed and fit DiffractionPattern data.        		 - source code - -
        - -
        -   - - - - - - -
        plotObservedPattern(pat)
        - Plot the observed DiffractionPattern data.        		 - source code - -
        - -
        -   - - - - - - -
        plot2D(plotset, - unitx, - unity, - infolist, - colorlist, - stylelist, - marklist, - xlimtuple='auto', - ylimtuple='auto')
        - plot a 2D graph for one or a coule of lines on a same graph - -Arguments: -plotset -- list of array, number of array = 2*line - [x1, y1, x2, y2, ...], where xi, yi are - lists containing the column data -unitx -- string, information/unit of x-axis -unity -- string, information/unit of y-axis -infolist -- list , label of each line (y1, y2, ...        		 - source code - -
        - -
        -   - - - - - - -
        _isFloat(f)
        - Test if an object is a float.        		 - source code - -
        - -
        -   - - - - - - -
        _isFloatList(L)
        - Test if a list contains only floats.        		 - source code - -
        - -
        -   - - - - - - -
        _isInt(f)
        - Test if an object is a int.        		 - source code - -
        - -
        -   - - - - - - -
        _isIntList(L)
        - Test if a list contains only ints.        		 - source code - -
        - -
        -   - - - - - - -
        _rebinArray(A, - xold, - xnew)
        - Rebin the an array by interpolating over the new x range.        		 - source code - -
        - -
        -   - - - - - - -
        removeRegion(xs, - yslist, - excludedregion)
        - Remove a region (on x) from (xs, [y1s, y2s]) list pair...        		 - source code - -
        - -
        - - - - - - - - - - - - -
        - - - - - -
        Variables[hide private]
        -
        -   - - __id__ = '$Id: plot2d.py 2839 2009-03-10 21:36:23Z wdzhou $' -
        -   - - _offsetMultiplier = 1.5 -
        - - - - - - -
        - - - - - -
        Function Details[hide private]
        -
        - -
        - -
        - - -
        -

        plotFit(fit) -

        -         		source code  -
        - -

        Plot the patterns in a fit.

        -

        It wraps method: plotPattern()

        -

        Argument: fit - An instance of Fit or a list of instances.

        - Return - None -
        -
        -
        -
        - -
        - -
        - - -
        -

        plotPattern(pat) -

        -         		source code  -
        - - 
        -
-Plot a pattern.
-
-pat     --  An instance of DiffractionPattern or a list of
-            DiffractionPattern instances. If the fit has been performed,
-            this will plot the data, fit and difference.  Otherwise, it will
-            just plot the observed pattern.
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        _plotPattern(pat) -

        -         		source code  -
        - - 
        -Plot the observed and fit DiffractionPattern data.
-
-pat     --  An instance of DiffractionPattern or a list of
-            DiffractionPattern instances. If the fit has been performed,
-            this will plot the data, fit and difference.  Otherwise, it will
-            just plot the observed pattern.
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        plotObservedPattern(pat) -

        -         		source code  -
        - - 
        -Plot the observed DiffractionPattern data.
-
-pat     --  An instance of DiffractionPattern or a list of
-            DiffractionPattern instances.
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        plot2D(plotset, - unitx, - unity, - infolist, - colorlist, - stylelist, - marklist, - xlimtuple='auto', - ylimtuple='auto') -

        -         		source code  -
        - - 
        -
-plot a 2D graph for one or a coule of lines on a same graph
-
-Arguments:
-plotset         --  list of array, number of array = 2*line
-                    [x1, y1, x2, y2, ...], where xi, yi are
-                    lists containing the column data
-unitx           --  string, information/unit of x-axis
-unity           --  string, information/unit of y-axis
-infolist        --  list  , label of each line (y1, y2, ... )
-colorlist       --  list  , string, color of each line (y1, y2, ... )
-sytellist       --  list  , string, style of each line (y1, y2, ... )
-marklist        --  list  , string, mark  of each line (y1, y2, ... )
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        _rebinArray(A, - xold, - xnew) -

        -         		source code  -
        - -

        Rebin the an array by interpolating over the new x range.

        -

        Arguments: A -- Array to interpolate xold -- Old sampling - array xnew -- New sampling array

        -

        This uses cubic spline interpolation.

        - Returns: A new array over the new sampling array. -
        -
        -
        -
        - -
        - -
        - - -
        -

        removeRegion(xs, - yslist, - excludedregion) -

        -         		source code  -
        - - 
        -
-Remove a region (on x) from (xs, [y1s, y2s]) list pair
-
-Argument:
-- xs    :   list/array of float
-- ys    :   list/array of float
-- excludedregion    :   tuple (x, y)
-
-Return  :   2-tuple 
-
-
        -
        -
        -
        -
        -
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        Source Code for Module srrietveld.plot2d

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2008 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Wenduo Zhou 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14   
- 15  """ plot2d.py is in charge of plotting some 2D graph with  
- 16  publication standard output 
- 17   
- 18  created on 2007.09.27 
- 19   
- 20  Main Client Method: 
- 21      plot2D(plotset, unitx, unity, infolist, colorlist, stylelist, marklist): 
- 22   
- 23          plot a 2D graph for one or a coule of lines on a same graph 
- 24   
- 25          Arguments: 
- 26          plotset         --  list of array, number of array = 2*line 
- 27                              [x1, y1, x2, y2, ...], where xi, yi are 
- 28                              lists containing the column data 
- 29          unitx           --  string, information/unit of x-axis 
- 30          unity           --  string, information/unit of y-axis 
- 31          infolist        --  list  , label of each line (y1, y2, ... )   
- 32          colorlist       --  list  , string, color of each line (y1, y2, ... ) 
- 33          sytlelist       --  list  , string, style of each line (y1, y2, ... ) 
- 34          marklist        --  list  , string, mark  of each line (y1, y2, ... ) 
- 35   
- 36          plotset :  Length = #Line * 2; 
- 37          infolist, colorlist, stylelist, marklist: Length = #Line * 2 
- 38   
- 39  Classes Definition 
- 40  -  class PlotInfo2D 
- 41     *  __init__(self, listx, listy, color="black", style="solid", mark="none", label="") 
- 42  -  class Plot2D 
- 43     *  __init__(self, stringx = "", stringy = "", plotlist=[]) 
- 44  """ 
- 45   
- 46  __id__ = "$Id: plot2d.py 2839 2009-03-10 21:36:23Z wdzhou $" 
- 47   
- 48  from viserrors import VisualizationError 
- 49  from diffpy.refinementapi.exceptiontools import verifyType, isIterable 
- 50  import numpy 
- 51   
- 52  _offsetMultiplier = 1.5 
- 53   
- 54   
-
         55 -def plotFit(fit): 
-
         56      """ 
- 57      Plot the patterns in a fit. 
- 58   
- 59      It wraps method: plotPattern() 
- 60       
- 61      Argument: 
- 62      fit     -   An instance of Fit or a list of instances. 
- 63   
- 64      Return  -   None 
- 65      """ 
- 66      from diffpy.rietveldapi.fitutils import getAllPatterns 
- 67      if not isIterable(fit): 
- 68          fit = [fit] 
- 69      pats = [] 
- 70      for f in fit: 
- 71          pats.extend(getAllPatterns(f)) 
- 72      plotPattern(pats) 
- 73   
- 74      return 
-
         75   
- 76   
-
         77 -def plotPattern(pat): 
-
         78      """ 
- 79      Plot a pattern. 
- 80   
- 81      pat     --  An instance of DiffractionPattern or a list of 
- 82                  DiffractionPattern instances. If the fit has been performed, 
- 83                  this will plot the data, fit and difference.  Otherwise, it will 
- 84                  just plot the observed pattern. 
- 85      """ 
- 86      import diffpy.rietveldapi.patterns as APIPattern 
- 87      if not isIterable(pat): 
- 88          pat = [pat] 
- 89      for p in pat: 
- 90          verifyType(p, APIPattern.DiffractionPattern) 
- 91   
- 92      _plotPattern(pat) 
- 93   
- 94      return 
-
         95   
- 96   
-
         97 -def _plotPattern(pat): 
-
         98      """Plot the observed and fit DiffractionPattern data. 
- 99       
-100      pat     --  An instance of DiffractionPattern or a list of 
-101                  DiffractionPattern instances. If the fit has been performed, 
-102                  this will plot the data, fit and difference.  Otherwise, it will 
-103                  just plot the observed pattern. 
-104      """ 
-105      import diffpy.rietveldapi.patterns as APIPattern 
-106   
-107      if not isIterable(pat): 
-108          pat = [pat] 
-109      npat = len(pat) 
-110   
-111      # Get the data organized. When multiple sets are plotted, the optimal offset 
-112      # is inferred and the data is scaled accordingly. 
-113      plotset = [] 
-114      Ymax = 0 
-115      for p in pat: 
-116          Xcal, Ycal = p.getCalculatedPattern() 
-117          # Make sure Ycal is not all zero. If it is, then plot only the pattern 
-118          # and not the fit. 
-119          if not Ycal.any(): 
-120              _plotObservedPattern(pat) 
-121              return 
-122   
-123          # Interpolate Yobs over Xcal 
-124          Xobs, Yobs = p.getObservedPattern() 
-125          Yobs = _rebinArray(Yobs, Xobs, Xcal) 
-126          Ydif = Yobs - Ycal 
-127   
-128          # remove excluded region 
-129          excludedregions = p.getExcludedRegion() 
-130          xcal = Xcal[:] 
-131          ycal = Ycal[:] 
-132          ydif = Ydif[:] 
-133   
-134          for excludedregion in excludedregions: 
-135              xcal, ylist = removeRegion(xcal, [ycal, ydif], excludedregion) 
-136              ycal = ylist[0] 
-137              ydif = ylist[1] 
-138   
-139              if len(xcal) != len(ycal) or len(xcal) != len(ydif): 
-140                  print len(xcal), len(ycal), len(ydif) 
-141                  raise NotImplementedError("Here... not right!") 
-142   
-143          # Reflections 
-144          reflectdicts = p.getReflections() 
-145          minydif = min(ydif) 
-146          yrefval  = 1.5*min(ydif) 
-147          xreflist = [] 
-148          yreflist = [] 
-149          for reflectdict in reflectdicts: 
-150              for key in reflectdict.keys(): 
-151                  xreflist.append(reflectdict[key][0]) 
-152                  yreflist.append(yrefval) 
-153          xreflist = sorted(xreflist) 
-154          xref = numpy.array(xreflist) 
-155          yref = numpy.array(yreflist) 
-156   
-157          # Get the maximum Y value for scaling purposes 
-158          Ymax = max(max(ycal), max(Yobs)) 
-159           
-160          # Add the plots to a list 
-161          plotset.extend([Xcal, Yobs, xcal, ycal, xcal, ydif, xref, yref]) 
-162      # LOOP-OVER 
-163   
-164      offset = 0 
-165      diffOffset = 0 
-166      # Place these in the same order as the legend 
-167      for i in range(npat-1,-1,-1): 
-168   
-169          yobs = plotset[6*i+1] 
-170          ycal = plotset[6*i+3] 
-171          Ydif = plotset[6*i+5] 
-172          yref = plotset[6*i+7] 
-173   
-174          # Scale the data 
-175          scale = Ymax/max(Yobs) 
-176          Yobs *= scale 
-177          Ycal *= scale 
-178          Ydif *= scale 
-179          yref *= scale 
-180   
-181          preoffset = _offsetMultiplier*max(Yobs) 
-182   
-183          # Offset the data 
-184          diffOffset = _offsetMultiplier*(max(Ydif)) 
-185          preoffset = _offsetMultiplier*max(Yobs) 
-186          Yobs += offset 
-187          Ycal += offset 
-188          Ydif += offset - diffOffset 
-189          yref += offset - diffOffset 
-190   
-191          # Calculate the next offset 
-192          offset += preoffset + diffOffset 
-193   
-194      # Set up the other attributes of the plot 
-195      infolist = [] 
-196      for p in pat: 
-197          if isinstance(p, APIPattern.CWPattern) is True: 
-198              infolist.append("I_obs  (%s)"%p.getName().split(".")[0]) 
-199              infolist.append("I_cal  (%s)"%p.getName().split(".")[0]) 
-200              infolist.append("I_diff (%s)"%p.getName().split(".")[0]) 
-201              infolist.append(" ") 
-202          else: 
-203              infolist.append("I_obs  (Bank %s)"%p.getBankNumber()) 
-204              infolist.append("I_cal  (Bank %s)"%p.getBankNumber()) 
-205              infolist.append("I_diff (Bank %s)"%p.getBankNumber()) 
-206              infolist.append(" ") 
-207   
-208      xaxis = "%s (%s)"%(pat[0].getScatteringVariable(), pat[0].getUnits()) 
-209      yaxis = "Intensity (arb.)" 
-210      colorlist = ["black", "red", "green", "black"]*npat 
-211      stylelist = ["none", "solid", "solid", "none"]*npat 
-212      marklist  = ["+", "none", "none", "|"]*npat 
-213   
-214      plot2D(plotset, xaxis, yaxis, infolist, colorlist, stylelist, marklist) 
-215   
-216      return 
-
        217   
-218   
-
        219 -def plotObservedPattern(pat): 
-
        220      """Plot the observed DiffractionPattern data. 
-221       
-222      pat     --  An instance of DiffractionPattern or a list of 
-223                  DiffractionPattern instances. 
-224      """ 
-225      if not isIterable(pat): 
-226          pat = [pat] 
-227   
-228      # Get the data organized. When multiple sets are plotted, a optimal offset 
-229      # is inferred and the data is scaled accordingly. 
-230      plotset = [] 
-231      Ymax = 0 
-232      for p in pat: 
-233   
-234          Xobs, Yobs = p.getObservedPattern() 
-235   
-236          # Get the maximum Y value for scaling purposes 
-237          Ymax = max(Ymax, max(Yobs)) 
-238           
-239          # Add the plots to a list 
-240          plotset.extend([Xcal, Yobs]) 
-241   
-242   
-243      offset = 0 
-244      # Place these in the same order as the legend 
-245      for i in range(npat-1,-1,-1): 
-246          Yobs = plotset[2*i+1] 
-247   
-248          # Scale the data 
-249          scale = Ymax/max(Yobs) 
-250          Yobs *= scale 
-251   
-252          # Offset the data 
-253          Yobs += offset 
-254   
-255          # Calculate the next offset 
-256          offset += _offsetMultiplier*max(Yobs) 
-257   
-258      # Set up the other attributes of the plot 
-259      infolist = [] 
-260      for p in pat: 
-261          infolist.append("Iobs (%s)"%p.getName()) 
-262   
-263      npat = len(pat) 
-264      xaxis = "%s (%s)"%(pat[0].getScatteringVariable(), pat[0].getUnits()) 
-265      yaxis = "Intensity (arb.)" 
-266      colorlist = ["black"]*npat 
-267      stylelist = ["none"]*npat 
-268      marklist = ["+"]*npat 
-269   
-270      plot2D(plotset, xaxis, yaxis, infolist, colorlist, stylelist, marklist) 
-271   
-272      return 
-
        273   
-274   
-
        275 -def plot2D(plotset, unitx, unity, infolist, colorlist, stylelist, marklist,  
-276          xlimtuple = "auto", ylimtuple = "auto"): 
-
        277      """ 
-278      plot a 2D graph for one or a coule of lines on a same graph 
-279   
-280      Arguments: 
-281      plotset         --  list of array, number of array = 2*line 
-282                          [x1, y1, x2, y2, ...], where xi, yi are 
-283                          lists containing the column data 
-284      unitx           --  string, information/unit of x-axis 
-285      unity           --  string, information/unit of y-axis 
-286      infolist        --  list  , label of each line (y1, y2, ... ) 
-287      colorlist       --  list  , string, color of each line (y1, y2, ... ) 
-288      sytellist       --  list  , string, style of each line (y1, y2, ... ) 
-289      marklist        --  list  , string, mark  of each line (y1, y2, ... ) 
-290      """ 
-291      # 1. prepare 
-292      plotlist = [] 
-293      for index in xrange(0, len(infolist)): 
-294          infotuple = (plotset[2*index], plotset[2*index+1], colorlist[index], 
-295                  stylelist[index], marklist[index], infolist[index]) 
-296          plotlist.append(infotuple) 
-297      # LOOP-OVER 
-298   
-299      # 2. x and y limit 
-300      if xlimtuple is "auto": 
-301          xmax = max( plotset[0] ) 
-302          xmin = min( plotset[0] ) 
-303          for sindex in xrange( 1, len(plotset) ): 
-304              if sindex % 2 == 0: 
-305                  # x-value array are numbered as even 
-306                  if max( plotset[sindex] ) > xmax: 
-307                      xmax = max( plotset[sindex] ) 
-308                  if min( plotset[sindex] ) < xmin: 
-309                      xmin = min( plotset[sindex] ) 
-310              # END-IF 
-311          # LOOP-OVER 
-312          xlimtuple = (xmin, xmax) 
-313   
-314      elif len(xlimtuple) != 2: 
-315          xliumtuple = None 
-316   
-317      else: 
-318          pass 
-319   
-320      if ylimtuple is "auto": 
-321          ymax = max( plotset[1] ) 
-322          ymin = min( plotset[1] ) 
-323          for sindex in xrange( 2, len(plotset) ): 
-324              if sindex % 2 == 1: 
-325                  # x-value array are numbered as even 
-326                  if max( plotset[sindex] ) > ymax: 
-327                      ymax = max( plotset[sindex] ) 
-328                  if min( plotset[sindex] ) < ymin: 
-329                      ymin = min( plotset[sindex] ) 
-330              # END-IF 
-331          # LOOP-OVER 
-332   
-333          # Re-scale ymax/ymin 
-334          if ymax > 0: 
-335              ymax = ymax * 1.10 
-336          else: 
-337              ymax = ymax / 1.10 
-338       
-339          if ymin > 0: 
-340              ymin = ymin / 1.10 
-341          else: 
-342              ymin = ymin * 1.10 
-343   
-344          ylimtuple = (ymin * 1.10, ymax * 1.10) 
-345   
-346      elif len(ylimtuple) != 2: 
-347          yliumtuple = None 
-348   
-349      else: 
-350          pass 
-351   
-352      # 3. plot 
-353      plot2dref = Plot2D(unitx, unity, plotlist) 
-354      plot2dref.plot(xlimtuple, ylimtuple) 
-355   
-356      return 
-
        357   
-358   
-
        359 -class Plot2D(object): 
-
        360      """Class to handle plotting a 2D graph containing multiple lines 
-361   
-362      Attributes: 
-363      - stringX 
-364      - stringY 
-365      - linelist[(list-x, list-y, color, line-style)] 
-366      """ 
-
        367 -    def __init__(self, stringx = "", stringy = "", plotlist=[]): 
-
        368          """ 
-369          initialization with the option to set up x-axis, y-axis and several lines in the graph 
-370   
-371          Argument: 
-372          - stringx   :   str, label of x-axis 
-373          - stringy   :   str, label of y-axis 
-374          - plotlist  :   list of 5-tuple:  
-375                          (array-x, array-y, color, line-style, mark, legend-title) 
-376                          each tuple is ONE LINE 
-377   
-378          Return      :   None 
-379          """ 
-380          # 1. Check Input argument 
-381          if isinstance(stringx, str) and isinstance(stringy, str): 
-382              self.stringX = stringx 
-383              self.stringY = stringy 
-384          else: 
-385              raise VisualizationError("Axes labels must be strings") 
-386   
-387          # 2. Check and append plotlist 
-388          self.linelist = [] 
-389          if isIterable(plotlist): 
-390              for listx, listy, color, linestyle, mark, legend in plotlist: 
-391                  if not isIterable(listx): 
-392                      raise VisualizationError("list-X is not iterable") 
-393                  if not isIterable(listy): 
-394                      raise VisualizationError("list-Y is not iterable") 
-395                  plotinfo = PlotInfo2D(listx, listy, color=color, style=linestyle, mark=mark, label=legend) 
-396                  self.linelist.append(plotinfo) 
-397              # LOOP-OVER 
-398          else: 
-399              raise VisualizationError("plotlist must be iterable") 
-400          # END-IF 
-401   
-402          return 
-
        403   
-404   
-
        405 -    def plot(self, limxtuple, limytuple): 
-
        406          """ Plotting 
-407   
-408          Argument: 
-409          - limxtuple :   2-tuple or None to limit the range of X-axis 
-410          - limytuple     2-tuple of None to limit the range of Y-axis 
-411   
-412          Return      :   None 
-413          """ 
-414          PlotMatLib.plot2D(self.linelist, self.stringX, self.stringY, limxtuple, limytuple) 
-415   
-416          return 
-
        417   
-418   
-
        419 -    def setLine(self, listx, listy, color="black", style="solid", mark="none", label = ""): 
-
        420          """ 
-421          set a new line with enough information 
-422          """ 
-423          plotinfo = PlotInfo2D(listx, listy, color, style, mark, label) 
-424          self.linelist.append(plotinfo) 
-425   
-426          return 
-
        427   
-428   
-
        429 -class PlotInfo2D(object): 
-
        430      """ 
-431      class PlotInfo2D contains the plot information for plotting a 2D figure 
-432      It is not bounded to matplotlib tightly 
-433   
-434      Attributes: 
-435      - listx 
-436      - listy 
-437      - color 
-438      - mark   : mark style 
-439      - style  : line style 
-440      - label  : label for the legend 
-441      """ 
-442   
-443      ColorList      = ["black", "blue", "green", "yellow", "red", "cyan"] 
-444      LineStyleList  = ["solid", "dash", "none"] 
-445      MarkStyleList  = ["+", "circle", "dot", "square", "up triangle", "x", "|", "none"] 
-446   
-
        447 -    def __init__(self, listx, listy, color="black", style="solid", mark="none", label=""): 
-
        448          """ 
-449          initialization 
-450   
-451          Argument: 
-452          - listx :   list of float 
-453          - listy :   list of float 
-454          - color :   str 
-455          - style :   str 
-456          - mark  :   str 
-457          - label :   str 
-458          """ 
-459          # Initialize 
-460          self.label = label 
-461          self.setX(listx) 
-462          self.setY(listy) 
-463          self.setColor(color) 
-464          self.setLineStyle(style) 
-465          self.setMarkStyle(mark) 
-466   
-467          # Check 
-468          if len(self.listx) != len(self.listy): 
-469              from warnings import warn 
-470              wmsg = "listx and listy length is not equal" 
-471              warn(wmsg) 
-472   
-473          return 
-
        474   
-475   
-
        476 -    def getX(self): 
-
        477          """ 
-478          get the x-coordinate list 
-479          """ 
-480          return self.listx 
-
        481   
-482   
-
        483 -    def getY(self): 
-
        484          """ 
-485          get the y-coordinate list 
-486          """ 
-487          return self.listy 
-
        488   
-489   
-
        490 -    def getColor(self): 
-
        491          """ 
-492          get the color 
-493          """ 
-494          return self.color 
-
        495   
-496   
-
        497 -    def getLineStyle(self): 
-
        498          """ 
-499          get the line style 
-500          """ 
-501          return self.style 
-
        502   
-503   
-
        504 -    def getMarkStyle(self): 
-
        505          """ 
-506          get the mark style 
-507          """ 
-508          return self.mark 
-
        509   
-
        510 -    def getLabel(self): 
-
        511          """Get the label for the legend.""" 
-512          return self.label 
-
        513   
-
        514 -    def setLabel(self, label): 
-
        515          """Set the label.""" 
-516          self.label = label 
-517          return 
-
        518   
-
        519 -    def setX(self, listx): 
-
        520          """ 
-521          set the x-coordinate of all data points  
-522   
-523          listx:  iterable of floats 
-524          """ 
-525          if _isFloatList(listx): 
-526              self.listx = list(listx) 
-527          else: 
-528              raise VisualizationError("Input must be an iterable of floats.") 
-529          return 
-
        530          
-531       
-
        532 -    def setY(self, listy): 
-
        533          """ 
-534          set the x-coordinate of all data points  
-535   
-536          listx:  ListFloat 
-537          """ 
-538          if _isFloatList(listy): 
-539              self.listy = list(listy) 
-540          else: 
-541              raise VisualizationError("Input must be an iterable of floats.") 
-
        542   
-543   
-
        544 -    def setColor(self, color="black"): 
-
        545          """ 
-546          set the color to system understandable color 
-547          """ 
-548          if isinstance(color,str) and color.lower() in PlotInfo2D.ColorList: 
-549              self.color = color.lower() 
-550          else: 
-551              from warnings import warn 
-552              wmsg = "color '%s' is not supported, using 'black'"%color 
-553              warn(wmsg) 
-554              self.color = "black" 
-555   
-556          return 
-
        557           
-558   
-
        559 -    def setLineStyle(self, style="solid"): 
-
        560          """ 
-561          set the color to system understandable color 
-562          """ 
-563          if isinstance(style, str) and style.lower() in PlotInfo2D.LineStyleList: 
-564              self.style = style.lower() 
-565          else: 
-566              from warnings import warn 
-567              wmsg = "line style '%s' is not supported, using 'solid'"%style 
-568              warn(wmsg) 
-569              self.style = "solid" 
-570   
-571          return 
-
        572   
-573   
-
        574 -    def setMarkStyle(self, mark="none"): 
-
        575          """ 
-576          set the color to system understandable color 
-577          """ 
-578          if isinstance(mark, str) and mark.lower() in PlotInfo2D.MarkStyleList: 
-579              self.mark = mark.lower() 
-580          else: 
-581              from warnings import warn 
-582              wmsg = "Mark '%s' is not supported, using 'none'"%mark 
-583              warn(wmsg) 
-584              self.mark = "none" 
-585   
-586          return 
-
        587           
-588   
-
        589 -class PlotMatLib(object): 
-
        590      """ 
-591      Class PlotMatLib is dedicated to make plots by matplot lib 
-592      Most of the methods in this class are class instance 
-593   
-594      Attribute 
-595      -  
-596      """ 
-597      ColorTable  = {"black":'k', "blue":"b", "green":"g", "red":"r", "cyan":'c', "yellow":'y'} 
-598      LineStyleTable  = {"solid":"-", "dot":':', "dash":"--", "dash dot":'-.', "none":''} 
-599      MarkStyleTable = {"none":"", "+":"+", "circle":'o', "dot":',', "square":'s', "x":'x', "up triangle":'^', "|":'|'} 
-600   
-
        601 -    def __init__(self): 
-
        602          """ 
-603          Initialization 
-604          """ 
-605          return 
-
        606   
-607      @staticmethod 
-
        608 -    def plot2D(plotinfolist, labelx, labely, xlimtuple, ylimtuple): 
-
        609          """ 
-610          Plotting the 2D Figure by matplotlib using multiple threads 
-611   
-612   
-613          Argument: 
-614          - plotinfolist  :   list of PlotInfo2D instances 
-615          - labelx        :   str: label for X-axis 
-616          - labely        :   str: label for Y-axis 
-617   
-618          Return          :   None 
-619          """ 
-620          from    threading   import  Thread 
-621          import  pylab 
-622   
-623          class plotFigure(Thread): 
-624              """ 
-625              class PlotFigure is a multi-thread class to plot a figure 
-626              """ 
-627              
-628              def __init__ (self, linelist, labelx, labely): 
-629                  """ 
-630                  initialization  
-631   
-632                  linelist:  list of PlotInfo2D instances 
-633                  xlabel  :  label for x-axis 
-634                  ylabel  :  label for y-axis 
-635                  """ 
-636                  Thread.__init__(self) 
-637   
-638                  self.linelist = linelist 
-639                  self.labelx   = labelx 
-640                  self.labely   = labely 
-641                  self.status   = -1 
-642   
-643                  return 
-
        644   
-645           
-646              def run(self): 
-647                  """ 
-648                  running plot 
-649                  """ 
-650                  # Show this and then turn off interactive 
-651                  # configure all line (1) x list (2) y-list (3) line style 
-652                  for info in self.linelist: 
-653                      # construct information 
-654                      xlist = info.getX() 
-655                      ylist = info.getY() 
-656                      color     = PlotMatLib.ColorTable[info.getColor()] 
-657                      linestyle = PlotMatLib.LineStyleTable[info.getLineStyle()] 
-658                      markstyle = PlotMatLib.MarkStyleTable[info.getMarkStyle()] 
-659                      matstyle  = color+linestyle+markstyle 
-660                       
-661                      raise NotImplementedError("1043") 
-662                      if 1:    
-663                          print "1043:  matstyle = %-20s"% (matstyle) 
-664   
-665                      # plot to a line 
-666                      line  = pylab.plot(xlist, ylist, matstyle) 
-667   
-668                  # set up axis and title 
-669                  pylab.xlabel(self.labelx) 
-670                  pylab.ylabel(self.labely) 
-671   
-672                  raise NotImplementedError, "Not Used.  More  Debug" 
-673   
-674                  # set the position float digit and show 
-675                  pylab.gca().format_coord = lambda x, y : 'x=%g, y=%g' % (x,y) 
-676                   
-677                  # Draw the figure 
-678                  pylab.show() 
-679   
-680                  return 
-
        681   
-682              # END class plotFigure 
-683               
-684   
-685          def plotFigureSingleThread(plotinfolist, labelx, labely, xlimtuple = None, ylimtuple = None): 
-686              """ Using the single thread to do plotting 
-687   
-688              Argument: 
-689              - plotinfolist  :   list of PlotInfo2D instances for plotting 
-690              - labelx        :   label for x-axis 
-691              - labely        :   label for y-axis 
-692              - xlimtuple     :   2-tuple of float to limit the range of x-axis 
-693              - ylimtuple     :   2-tuple of float to limit the rnage of y-axis 
-694              """ 
-695              for info in plotinfolist: 
-696                  # construct information 
-697                  xlist     = info.getX() 
-698                  ylist     = info.getY() 
-699                  label     = info.getLabel() 
-700                  color     = PlotMatLib.ColorTable[info.getColor()] 
-701                  linestyle = PlotMatLib.LineStyleTable[info.getLineStyle()] 
-702                  markstyle = PlotMatLib.MarkStyleTable[info.getMarkStyle()] 
-703                  matstyle  = color+linestyle+markstyle 
-704   
-705                  # plot to a line 
-706                  line  = pylab.plot(xlist, ylist, matstyle, label=label) 
-707               
-708              # set up axis and title 
-709              pylab.xlabel(labelx) 
-710              pylab.ylabel(labely) 
-711              pylab.legend(loc=1) 
-712               
-713              # set the position float digit and show 
-714              pylab.gca().format_coord = lambda x, y : 'x=%g, y=%g' % (x,y) 
-715   
-716              if xlimtuple is not None: 
-717                  pylab.xlim( xlimtuple ) 
-718              if ylimtuple is not None: 
-719                  pylab.ylim( ylimtuple ) 
-720   
-721              # show 
-722              pylab.show() 
-723   
-724              return 
-725   
-726          # END-DEF plotFigureSingleThread(plotinfolist, labelx, labely): 
-727   
-728          # Main Functions 
-729          # 1. Plot 
-730          current = plotFigureSingleThread(plotinfolist, labelx, labely, xlimtuple, ylimtuple) 
-731   
-732          #current = plotFigure(plotinfolist, labelx, labely) 
-733          #current.start() 
-734   
-735          return 
-736           
-737      # END-DEF def plot2D(plotinfolist, labelx, labely): 
-738   
-739  # END-CLASS-DEF  Plot2D 
-740   
-741   
-
        742 -def _isFloat(f): 
-
        743      """Test if an object is a float.""" 
-744      try: 
-745          float(f) 
-746          return True 
-747      except ValueError: 
-748          return False 
-
        749   
-750   
-
        751 -def _isFloatList(L): 
-
        752      """Test if a list contains only floats.""" 
-753      return sum(map(_isFloat, L)) == len(L) 
-
        754   
-755   
-
        756 -def _isInt(f): 
-
        757      """Test if an object is a int.""" 
-758      return isinstance(f, int) 
-
        759   
-760   
-
        761 -def _isIntList(L): 
-
        762      """Test if a list contains only ints.""" 
-763      return sum(map(_isInt, L)) == len(L) 
-
        764   
-765   
-
        766 -def _rebinArray(A, xold, xnew): 
-
        767      """Rebin the an array by interpolating over the new x range. 
-768   
-769      Arguments: 
-770      A       --  Array to interpolate 
-771      xold    --  Old sampling array 
-772      xnew    --  New sampling array 
-773   
-774      This uses cubic spline interpolation. 
-775       
-776      Returns: A new array over the new sampling array. 
-777      """ 
-778      from scipy.interpolate import splrep, splev 
-779      finterp = splrep(xold, A, s=0) 
-780      return splev(xnew, finterp, der=0) 
-
        781   
-782   
-
        783 -def removeRegion(xs, yslist, excludedregion): 
-
        784      """ 
-785      Remove a region (on x) from (xs, [y1s, y2s]) list pair 
-786   
-787      Argument: 
-788      - xs    :   list/array of float 
-789      - ys    :   list/array of float 
-790      - excludedregion    :   tuple (x, y) 
-791   
-792      Return  :   2-tuple  
-793      """ 
-794      import auxiliary as AX 
-795   
-796      lowbound = excludedregion[0] 
-797      upbound  = excludedregion[1] 
-798   
-799      if lowbound >= upbound: 
-800          errmsg = "Region given is in wrong order (%-10s %-10s)"%    \ 
-801              (lowbound, upbound) 
-802          raise NotImplementedError(errmsg) 
-803      # END-IF 
-804   
-805      lowindex = AX.getValueIndex(xs, lowbound) 
-806      upindex  = AX.getValueIndex(xs, upbound) 
-807   
-808      newxs = numpy.concatenate( (xs[0:lowindex], xs[upindex:len(xs)]) ) 
-809      newyslist = [] 
-810      for ys in yslist: 
-811          newys = numpy.concatenate( (ys[0:lowindex], ys[upindex:len(xs)]) ) 
-812          newyslist.append(newys) 
-813   
-814      return ( (newxs, newyslist) ) 
-
        815   
-816   
-817  if __name__ == "__main__": 
-818      # Simple tests 
-819   
-820      P = PlotInfo2D([],[]) 
-821      P.setColor("allka") 
-822   
-
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        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:27 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.plot2d.Plot2D-class.html b/static_root/doc/srrietveld/developers/srrietveld.plot2d.Plot2D-class.html deleted file mode 100644 index e8717512..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.plot2d.Plot2D-class.html +++ /dev/null @@ -1,330 +0,0 @@ - - - - - srrietveld.plot2d.Plot2D - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module plot2d :: - Class Plot2D - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class Plot2D

        source code

        -
        -object --+
-         |
-        Plot2D
-
        - -
        -
        -Class to handle plotting a 2D graph containing multiple lines
-
-Attributes:
-- stringX
-- stringY
-- linelist[(list-x, list-y, color, line-style)]
-
-


        - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - stringx='', - stringy='', - plotlist=[])
        - initialization with the option to set up x-axis, y-axis and several lines in the graph...        		 - source code - -
        - -
        -   - - - - - - -
        plot(self, - limxtuple, - limytuple)
        - Plotting...        		 - source code - -
        - -
        -   - - - - - - -
        setLine(self, - listx, - listy, - color='black', - style='solid', - mark='none', - label='')
        - set a new line with enough information        		 - source code - -
        - -
        -

        Inherited from object: - __delattr__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__, - __str__ -

        -
        - - - - - - - - - -
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        -

        Inherited from object: - __class__ -

        -
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        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - stringx='', - stringy='', - plotlist=[]) -
        (Constructor) -

        -         		source code  -
        - - 
        -
-initialization with the option to set up x-axis, y-axis and several lines in the graph
-
-Argument:
-- stringx   :   str, label of x-axis
-- stringy   :   str, label of y-axis
-- plotlist  :   list of 5-tuple: 
-                (array-x, array-y, color, line-style, mark, legend-title)
-                each tuple is ONE LINE
-
-Return      :   None
-
-
        -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        plot(self, - limxtuple, - limytuple) -

        -         		source code  -
        - - 
        -Plotting
-
-Argument:
-- limxtuple :   2-tuple or None to limit the range of X-axis
-- limytuple     2-tuple of None to limit the range of Y-axis
-
-Return      :   None
-
-
        -
        -
        -
        -
        -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.plot2d.PlotInfo2D-class.html b/static_root/doc/srrietveld/developers/srrietveld.plot2d.PlotInfo2D-class.html deleted file mode 100644 index 90fee88c..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.plot2d.PlotInfo2D-class.html +++ /dev/null @@ -1,596 +0,0 @@ - - - - - srrietveld.plot2d.PlotInfo2D - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module plot2d :: - Class PlotInfo2D - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class PlotInfo2D

        source code

        -
        -object --+
-         |
-        PlotInfo2D
-
        - -
        -
        -
-class PlotInfo2D contains the plot information for plotting a 2D figure
-It is not bounded to matplotlib tightly
-
-Attributes:
-- listx
-- listy
-- color
-- mark   : mark style
-- style  : line style
-- label  : label for the legend
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - listx, - listy, - color='black', - style='solid', - mark='none', - label='')
        - initialization...        		 - source code - -
        - -
        -   - - - - - - -
        getX(self)
        - get the x-coordinate list        		 - source code - -
        - -
        -   - - - - - - -
        getY(self)
        - get the y-coordinate list        		 - source code - -
        - -
        -   - - - - - - -
        getColor(self)
        - get the color        		 - source code - -
        - -
        -   - - - - - - -
        getLineStyle(self)
        - get the line style        		 - source code - -
        - -
        -   - - - - - - -
        getMarkStyle(self)
        - get the mark style        		 - source code - -
        - -
        -   - - - - - - -
        getLabel(self)
        - Get the label for the legend.        		 - source code - -
        - -
        -   - - - - - - -
        setLabel(self, - label)
        - Set the label.        		 - source code - -
        - -
        -   - - - - - - -
        setX(self, - listx)
        - set the x-coordinate of all data points        		 - source code - -
        - -
        -   - - - - - - -
        setY(self, - listy)
        - set the x-coordinate of all data points        		 - source code - -
        - -
        -   - - - - - - -
        setColor(self, - color='black')
        - set the color to system understandable color        		 - source code - -
        - -
        -   - - - - - - -
        setLineStyle(self, - style='solid')
        - set the color to system understandable color        		 - source code - -
        - -
        -   - - - - - - -
        setMarkStyle(self, - mark='none')
        - set the color to system understandable color        		 - source code - -
        - -
        -

        Inherited from object: - __delattr__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__, - __str__ -

        -
        - - - - - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - ColorList = ['black', 'blue', 'green', 'yellow', 'red', 'cyan'] -
        -   - - LineStyleList = ['solid', 'dash', 'none'] -
        -   - - MarkStyleList = ['+', 'circle', 'dot', 'square', 'up triangle'... -
        - - - - - - - - - -
        - - - - - -
        Properties[hide private]
        -
        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - listx, - listy, - color='black', - style='solid', - mark='none', - label='') -
        (Constructor) -

        -         		source code  -
        - - 
        -
-initialization
-
-Argument:
-- listx :   list of float
-- listy :   list of float
-- color :   str
-- style :   str
-- mark  :   str
-- label :   str
-
-
        -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        setX(self, - listx) -

        -         		source code  -
        - -

        set the x-coordinate of all data points

        - listx: iterable of floats -
        -
        -
        -
        - -
        - -
        - - -
        -

        setY(self, - listy) -

        -         		source code  -
        - -

        set the x-coordinate of all data points

        - listx: ListFloat -
        -
        -
        -
        -
        - - - - - - -
        - - - - - -
        Class Variable Details[hide private]
        -
        - -
        - -
        -

        MarkStyleList

        - -
        -
        -
        -
        Value:
        - 
        -['+', 'circle', 'dot', 'square', 'up triangle', 'x', '|', 'none']
-
        -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.plot2d.PlotMatLib-class.html b/static_root/doc/srrietveld/developers/srrietveld.plot2d.PlotMatLib-class.html deleted file mode 100644 index ef10826e..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.plot2d.PlotMatLib-class.html +++ /dev/null @@ -1,450 +0,0 @@ - - - - - srrietveld.plot2d.PlotMatLib - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module plot2d :: - Class PlotMatLib - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class PlotMatLib

        source code

        -
        -object --+
-         |
-        PlotMatLib
-
        - -
        -
        -
-Class PlotMatLib is dedicated to make plots by matplot lib
-Most of the methods in this class are class instance
-
-Attribute
-- 
-
-


        - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self)
        - Initialization        		 - source code - -
        - -
        -

        Inherited from object: - __delattr__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__, - __str__ -

        -
        - - - - - - - - - -
        - - - - - -
        Static Methods[hide private]
        -
        -   - - - - - - -
        plot2D(plotinfolist, - labelx, - labely, - xlimtuple, - ylimtuple)
        - Plotting the 2D Figure by matplotlib using multiple threads...        		 - source code - -
        - -
        - - - - - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - ColorTable = {'black': 'k', 'blue': 'b', 'cyan': 'c', 'green':... -
        -   - - LineStyleTable = {'dash': '--', 'dash dot': '-.', 'dot': ':', ... -
        -   - - MarkStyleTable = {'+': '+', 'circle': 'o', 'dot': ',', 'none':... -
        - - - - - - - - - -
        - - - - - -
        Properties[hide private]
        -
        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self) -
        (Constructor) -

        -         		source code  -
        - - Initialization -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        plot2D(plotinfolist, - labelx, - labely, - xlimtuple, - ylimtuple) -
        Static Method -

        -         		source code  -
        - - 
        -
-Plotting the 2D Figure by matplotlib using multiple threads
-
-
-Argument:
-- plotinfolist  :   list of PlotInfo2D instances
-- labelx        :   str: label for X-axis
-- labely        :   str: label for Y-axis
-
-Return          :   None
-
-
        -
        -
        -
        -
        -
        - - - - - - -
        - - - - - -
        Class Variable Details[hide private]
        -
        - -
        - -
        -

        ColorTable

        - -
        -
        -
        -
        Value:
        - 
        -{'black': 'k',
- 'blue': 'b',
- 'cyan': 'c',
- 'green': 'g',
- 'red': 'r',
- 'yellow': 'y'}
-
        -
        -
        -
        -
        - -
        - -
        -

        LineStyleTable

        - -
        -
        -
        -
        Value:
        - 
        -{'dash': '--', 'dash dot': '-.', 'dot': ':', 'none': '', 'solid': '-'}
-
        -
        -
        -
        -
        - -
        - -
        -

        MarkStyleTable

        - -
        -
        -
        -
        Value:
        - 
        -{'+': '+',
- 'circle': 'o',
- 'dot': ',',
- 'none': '',
- 'square': 's',
- 'up triangle': '^',
- 'x': 'x',
- '|': '|'}
-
        -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
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        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.qbackgrounds-module.html b/static_root/doc/srrietveld/developers/srrietveld.qbackgrounds-module.html deleted file mode 100644 index c5507674..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.qbackgrounds-module.html +++ /dev/null @@ -1,207 +0,0 @@ - - - - - srrietveld.qbackgrounds - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
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        - - Package srrietveld :: - Module qbackgrounds - - - - - - -
        [hide private]
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        -
        - -

        Module qbackgrounds

        source code

        - - - - - - - - - - - - -
        - - - - - -
        Variables[hide private]
        -
        -   - - __id__ = '$Id: qbackgrounds.py 2792 2009-03-02 15:56:43Z wdzho... -
        -   - - Qbackground = {'NI': [4.3719382075, 5.2504694632, 9.0205874168... -
        - - - - - - -
        - - - - - -
        Variables Details[hide private]
        -
        - -
        - -
        -

        __id__

        - -
        -
        -
        -
        Value:
        - 
        -'$Id: qbackgrounds.py 2792 2009-03-02 15:56:43Z wdzhou $'
-
        -
        -
        -
        -
        - -
        - -
        -

        Qbackground

        - -
        -
        -
        -
        Value:
        - 
        -{'NI': [4.3719382075,
-        5.2504694632,
-        9.02058741689,
-        10.989616226,
-        13.692870068,
-        14.6947993767,
-        16.8213521681,
-        17.9899250189,
-...
-
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        -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.qbackgrounds-pysrc.html b/static_root/doc/srrietveld/developers/srrietveld.qbackgrounds-pysrc.html deleted file mode 100644 index 0ec03a3e..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.qbackgrounds-pysrc.html +++ /dev/null @@ -1,210 +0,0 @@ - - - - - srrietveld.qbackgrounds - - - - - - - - - - - - - - - - - - - - - - -
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        - - Package srrietveld :: - Module qbackgrounds - - - - - - -
        [hide private]
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        -
        -

        Source Code for Module srrietveld.qbackgrounds

        -
        - 1  ############################################################################## 
- 2  # 
- 3  # diffpy.srrietveld by DANSE Diffraction group 
- 4  #                   Simon J. L. Billinge 
- 5  #                   (c) 2008 Trustees of the Columbia University 
- 6  #                   in the City of New York.  All rights reserved. 
- 7  # 
- 8  # File coded by:    Wenduo Zhou 
- 9  # 
-10  # See AUTHORS.txt for a list of people who contributed. 
-11  # See LICENSE.txt for license information. 
-12  # 
-13  ############################################################################## 
-14   
-15  __id__ = "$Id: qbackgrounds.py 2792 2009-03-02 15:56:43Z wdzhou $" 
-16   
-17  Qbackground = { 
-18      "NI": [ 
-19          4.3719382075 ,  
-20          5.2504694632 ,  
-21          9.02058741689,  
-22          10.989616226 ,  
-23          13.692870068 ,  
-24          14.6947993767,  
-25          16.8213521681,  
-26          17.9899250189,  
-27          19.5018336685,  
-28          20.4064418636,  
-29          22.0384720608,  
-30          22.8088843252,  
-31          24.0914063578,  
-32          25.9634408655,  
-33          27.9531334617,  
-34          28.5022568082,  
-35          29.5109904331,  
-36          31.1439675075,  
-37          32.6853451374,  
-38          34.0540449984,  
-39          35.4139322147,  
-40          36.9302242532,  
-41          39.1653430946,  
-42          39.6513200114,  
-43          40.4157168045,  
-44          41.5792418738,  
-45          42.6160549873,  
-46          43.0922293255,  
-47          43.7257869956,  
-48          44.7508856588,  
-49          46.1204349511,  
-50          46.7834046967,  
-51          47.6356617099,  
-52          48.5978934397,  
-53          49.5178858627,  
-54          50.3931725232,  
-55          51.1883766441,  
-56      ], 
-57  } 
-58   
-
        -
        - - - - - - - - - - - - - - - - - -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinebackend-module.html b/static_root/doc/srrietveld/developers/srrietveld.refinebackend-module.html deleted file mode 100644 index bd603ff1..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinebackend-module.html +++ /dev/null @@ -1,194 +0,0 @@ - - - - - srrietveld.refinebackend - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
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        - - Package srrietveld :: - Module refinebackend - - - - - - -
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        -
        - -

        Module refinebackend

        source code

        -Refinement Backend Setup

        - - - - - - - - - - -
        - - - - - -
        Classes[hide private]
        -
        -   - - RietveldEngine
        - Refinement Engine -
        - - - - - - - - - -
        - - - - - -
        Variables[hide private]
        -
        -   - - __id__ = '$Id: refinebackend.py 2792 2009-03-02 15:56:43Z wdzh... -
        - - - - - - -
        - - - - - -
        Variables Details[hide private]
        -
        - -
        - -
        -

        __id__

        - -
        -
        -
        -
        Value:
        - 
        -'$Id: refinebackend.py 2792 2009-03-02 15:56:43Z wdzhou $'
-
        -
        -
        -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinebackend-pysrc.html b/static_root/doc/srrietveld/developers/srrietveld.refinebackend-pysrc.html deleted file mode 100644 index 99e6c621..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinebackend-pysrc.html +++ /dev/null @@ -1,225 +0,0 @@ - - - - - srrietveld.refinebackend - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
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        - - Package srrietveld :: - Module refinebackend - - - - - - -
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        -

        Source Code for Module srrietveld.refinebackend

        -
        - 1  ############################################################################## 
- 2  # 
- 3  # diffpy.srrietveld by DANSE Diffraction group 
- 4  #                   Simon J. L. Billinge 
- 5  #                   (c) 2008 Trustees of the Columbia University 
- 6  #                   in the City of New York.  All rights reserved. 
- 7  # 
- 8  # File coded by:    Wenduo Zhou 
- 9  # 
-10  # See AUTHORS.txt for a list of people who contributed. 
-11  # See LICENSE.txt for license information. 
-12  # 
-13  ############################################################################## 
-14  """ 
-15  Refinement Backend Setup 
-16  """ 
-17   
-18  __id__ = "$Id: refinebackend.py 2792 2009-03-02 15:56:43Z wdzhou $" 
-19   
-
        20 -class RietveldEngine: 
-
        21      """ 
-22      Refinement Engine  
-23      """ 
-
        24 -    def __init__(self): 
-
        25          """ 
-26          Initialization 
-27          """ 
-28          self._rietveld_engine_modules = {} 
-29          self._rietveld_engine = 'diffpy.pyfullprof' 
-30          return 
-
        31   
-32   
-
        33 -    def getRietveldEngineModule(self, submodule=None): 
-
        34          """ 
-35          build full name of the requested module, the default 
-36          is top-level engine module 
-37   
-38          Argument: 
-39          - submodule :   str/None, name of sub-module 
-40   
-41          Return      :   Module imported 
-42          """ 
-43          # 1. generate module name or full-length sub-module name 
-44          modname = self._rietveld_engine 
-45          if submodule is not None: 
-46              modname += "." + submodule 
-47   
-48          # 2. check if modname has been cached, if not, import module and cache 
-49          if not modname in self._rietveld_engine_modules.keys(): 
-50              exec 'import %s as mod' % modname 
-51              self._rietveld_engine_modules[modname] = mod 
-52   
-53          # 3. here modname is for sure in the _rietveld_engine_modules dictionary 
-54          mod = self._rietveld_engine_modules[modname] 
-55   
-56          return mod 
-
        57   
-58   
-
        59 -    def setRietveldEngine(self, module_name): 
-
        60          """ 
-61          Set Rietveld Engine to this class.   
-62          No module is imported 
-63   
-64          Argument: 
-65          - module_name   :   str 
-66   
-67          Return          :   None 
-68          """ 
-69          self._rietveld_engine_modules = {} 
-70          self._rietveld_engine = module_name 
-71   
-72          return 
-
        73   
-
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        -
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        Class RietveldEngine

        source code

        -Refinement Engine

        - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        getRietveldEngineModule(self, - submodule=None)
        - build full name of the requested module, the default...        		 - source code - -
        - -
        -   - - - - - - -
        setRietveldEngine(self, - module_name)
        - Set Rietveld Engine to this class.        		 - source code - -
        - -
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        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
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        getRietveldEngineModule(self, - submodule=None) -

        -         		source code  -
        - - 
        -
-build full name of the requested module, the default
-is top-level engine module
-
-Argument:
-- submodule :   str/None, name of sub-module
-
-Return      :   Module imported
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        setRietveldEngine(self, - module_name) -

        -         		source code  -
        - - 
        -
-Set Rietveld Engine to this class.  
-No module is imported
-
-Argument:
-- module_name   :   str
-
-Return          :   None
-
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        Module refineguides

        source code

        -
        -
-refineguides.py
-    containing various refining guides
-    this is end-user scripts:    
-      the end-user scripts will be build the refineguide list from what 
-    provided here
-    
-RefineGuide will be
-
-Requirements for RefineGuide to work properly:
-1. RefineGuide should work on a Fit object configured properly
-2. Fit object must contain instrument information for correct
-   guidance on instrument related parameters
-3. Fit object must contain measurement information for correct
-   guidance on measuremetn related parameters
-
-In order to guarantee SrRietveld RefineGuide work properly, 
-it is recommended to use SrRietveld-provided scripts to build a Fit instance
-
-Note
-1. the RefinementGuide is refinement engine independent!
-2. the methods in RefinementGuide should be static
-
-Created:    2008.03.25  11:42 EST
-
-RefineGuide 
-  |
-  |-- MeasureGuide
-       |-- BackgroundGuide
-  |
-  |-- InstrumentGuide
-       |-- ZeroGuide
-       |-- WavelengthGuide
-       |-- PeakShapeGuide
-       |-- ScaleGuide (Structure + Instrument + Measurement)
-  |
-  |-- SampleGuide
-       |-- AbsorptionCorrectionGuide
-       |-- LatticeGuide (Structure + Measurement)
-  |-- AtomGuide
-       |-- FractionalCoordinateGuide
-       |-- ADPGuide
-       |-- OccupancyGuide
-
-* Setup Methods
-  -  __init__(self)
-  -  getGuideConfig(self, fit, stage=1):  
-       the name of this method is confusing, but it must be used before setGuideStep()
-  -  setGuideStep(self, fit, step=1, stage=1, dry=False)
-  -  getRefineAllConfig(self, fit, stage=1)
-
-* Reset Methods
-  -  reset(self)
-  -  turnOff(self, fit)
-
-Information Retrieval
-  -  getNumStages(self)
-  -  getRefinedVariablesList(self)
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Classes[hide private]
        -
        -   - - RefineGuide
        - Virtual base class to guide refinement semi-automatically - -Concept: - The way to use RefineGuide follows the procedure as - 1. -
        -   - - InstrumentGuide
        - Guidance for instrument related parammeters - -Assumption: -1. -
        -   - - MeasurementGuide
        - MeasurementGuide is the guidance for parameters related to -specific measurement, for example -1. -
        -   - - SampleGuide
        - SampleGuide is the guidance for parameters related to -specific sample, including -1. -
        -   - - AtomGuide
        - StructureGuide is to guide the refinement -on parameters related to structure model - -Assumption: -1. -
        -   - - AbsorptionCorrectionGuide
        - Refine guide TOF absorption correction -
        -   - - ADPGuide
        - class to guide refinement on atomic displacement factor -
        -   - - BackgroundGuide
        - Guidance for backgrounds parameters -
        -   - - ExpDecayGuide
        - Refinement guidance on exponential decay parameters -Algorithm: - the exponential decay/peak profile of different phases shouldn't interefere with each other, - because they are determining the peaks' shape belonged to different sets, - therefore, - 1. -
        -   - - FractionalCoordinateGuide
        - Class to guide refinement on atoms' fractional coordinates -
        -   - - LatticeGuide
        - Refinement guidance on lattice parameter -We allow the freedom for each Phase of each Component to -have different lattice parameter. -
        -   - - OccupancyGuide
        - Refine guide on atom's occupancy -
        -   - - PeakShapeGuide
        - Class to guide the refine of Peak-Shape -
        -   - - ScaleGuide
        - Refinement guidance on scale factor -
        -   - - WavelengthGuide
        - Guidance to refine wavelength parameters -
        -   - - ZeroGuide
        - Guidance to refine zero parameters -
        - - - - - - - - - - - - - - - -
        - - - - - -
        Variables[hide private]
        -
        -   - - __id__ = '$Id: refineguides.py 2874 2009-03-12 20:43:17Z wdzho... -
        -   - - ETA = 1e-06 -
        -   - - _DEBUG = False -
        - - - - - - -
        - - - - - -
        Variables Details[hide private]
        -
        - -
        - -
        -

        __id__

        - -
        -
        -
        -
        Value:
        - 
        -'$Id: refineguides.py 2874 2009-03-12 20:43:17Z wdzhou $'
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refineguides-pysrc.html b/static_root/doc/srrietveld/developers/srrietveld.refineguides-pysrc.html deleted file mode 100644 index 7108804a..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refineguides-pysrc.html +++ /dev/null @@ -1,1800 +0,0 @@ - - - - - srrietveld.refineguides - - - - - - - - - - - - - - - - - - - - - - -
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        Source Code for Module srrietveld.refineguides

        -
        -   1  ############################################################################## 
-   2  # 
-   3  # diffpy.srrietveld by DANSE Diffraction group 
-   4  #                   Simon J. L. Billinge 
-   5  #                   (c) 2008 Trustees of the Columbia University 
-   6  #                   in the City of New York.  All rights reserved. 
-   7  # 
-   8  # File coded by:    Wenduo Zhou 
-   9  # 
-  10  # See AUTHORS.txt for a list of people who contributed. 
-  11  # See LICENSE.txt for license information. 
-  12  # 
-  13  ############################################################################## 
-  14   
-  15  """ 
-  16   refineguides.py 
-  17       containing various refining guides 
-  18       this is end-user scripts:     
-  19         the end-user scripts will be build the refineguide list from what  
-  20       provided here 
-  21        
-  22   RefineGuide will be 
-  23   
-  24   Requirements for RefineGuide to work properly: 
-  25   1. RefineGuide should work on a Fit object configured properly 
-  26   2. Fit object must contain instrument information for correct 
-  27      guidance on instrument related parameters 
-  28   3. Fit object must contain measurement information for correct 
-  29      guidance on measuremetn related parameters 
-  30   
-  31   In order to guarantee SrRietveld RefineGuide work properly,  
-  32   it is recommended to use SrRietveld-provided scripts to build a Fit instance 
-  33   
-  34   Note 
-  35   1. the RefinementGuide is refinement engine independent! 
-  36   2. the methods in RefinementGuide should be static 
-  37   
-  38   Created:    2008.03.25  11:42 EST 
-  39   
-  40   RefineGuide  
-  41     | 
-  42     |-- MeasureGuide 
-  43          |-- BackgroundGuide 
-  44     | 
-  45     |-- InstrumentGuide 
-  46          |-- ZeroGuide 
-  47          |-- WavelengthGuide 
-  48          |-- PeakShapeGuide 
-  49          |-- ScaleGuide (Structure + Instrument + Measurement) 
-  50     | 
-  51     |-- SampleGuide 
-  52          |-- AbsorptionCorrectionGuide 
-  53          |-- LatticeGuide (Structure + Measurement) 
-  54     |-- AtomGuide 
-  55          |-- FractionalCoordinateGuide 
-  56          |-- ADPGuide 
-  57          |-- OccupancyGuide 
-  58   
-  59   * Setup Methods 
-  60     -  __init__(self) 
-  61     -  getGuideConfig(self, fit, stage=1):   
-  62          the name of this method is confusing, but it must be used before setGuideStep() 
-  63     -  setGuideStep(self, fit, step=1, stage=1, dry=False) 
-  64     -  getRefineAllConfig(self, fit, stage=1) 
-  65   
-  66   * Reset Methods 
-  67     -  reset(self) 
-  68     -  turnOff(self, fit) 
-  69   
-  70   Information Retrieval 
-  71     -  getNumStages(self) 
-  72     -  getRefinedVariablesList(self) 
-  73   
-  74  """ 
-  75   
-  76  __id__ = "$Id: refineguides.py 2874 2009-03-12 20:43:17Z wdzhou $" 
-  77   
-  78  from diffpy.refinementapi.errors import  FitConfigurationError 
-  79  from diffpy.refinementapi.exceptiontools import  verifyType 
-  80  from diffpy.rietveldapi.Fit import  Fit 
-  81  import utilrefineguide as UR 
-  82   
-  83  ETA = 1.0E-6 
-  84   
-  85  _DEBUG = False 
-  86   
-
          87 -class RefineGuide: 
-
          88      """Virtual base class to guide refinement semi-automatically 
-  89   
-  90      Concept: 
-  91        The way to use RefineGuide follows the procedure as 
-  92        1. use getGuideConfig(guideFit) to examine and set up  
-  93           the refinement strategy 
-  94        2. use setGuideStep(guideFit, step) to turn on some  
-  95           variables at a certain step 
-  96        3. call Fit.refine() to refine 
-  97   
-  98      Future: 
-  99        It may be expanded such that some steps can be permuted 
- 100   
- 101      Class Variables: 
- 102      - _lock             :   lock the logic usage of getGuideConfig()  
- 103                              and setGuideStep 
- 104      - _guideFit         :   the Fit instance to guide 
- 105      - _variableslist    :   list of tuples (rietobj, parameter-name)  
- 106                              that have been added to refined; 
- 107   
- 108                           *  variables will be set to refine by this list 
- 109   
- 110      - _refinesetupdict  :   dictionary,  
- 111                              key:    integer, step from 1 to infinit,  
- 112                                      *** Note *** 
- 113                                      'step' defined here is the step refinement based on 
- 114                                      RefineSetup.  
- 115                                      Each 'step' can contain a few of RefineSetup on different 
- 116                                      Rietveld objects; 
- 117                                      Each 'step' can contain more than one 'atomic' refinement step, 
- 118                                      which is defined in RefineSetup 
- 119                              value:  list of tuples,  
- 120                                      (UnitRefineSetup, RietObj, IndicesTuple), 
- 121      """ 
- 122      guideDescription = "Virtual Base Class" 
- 123   
-
         124 -    def __init__(self): 
-
         125          """ 
- 126          initialization 
- 127          """ 
- 128          if self.__class__.__name__ == "RefineGuide": 
- 129              errmsg = "RefineGuide is virtual class; " + \ 
- 130                      "not allowed to be instantiated" 
- 131              raise NotImplementedError(errmsg) 
- 132   
- 133          # 1. init variable index list 
- 134          self._variableslist = []      
- 135          self._refinesetupdict = {} 
- 136   
- 137          # 2. interlock for get refinement information and set refinement 
- 138          self._lock     = False 
- 139          self._guideFit = None 
- 140   
- 141          return 
-
         142   
- 143   
-
         144 -    def __str__(self): 
-
         145          """ 
- 146          return the format reprensentation of this RefineGuide 
- 147          """ 
- 148          rstring = "RefineGuide: %-15s"% (self.guideDescription) 
- 149   
- 150          return rstring 
-
         151   
- 152   
-
         153 -    def resetVisitRecord(self): 
-
         154          """ Reset the visiting record (gVisit) 
- 155   
- 156          Return  :   None 
- 157          """ 
- 158          for step in sorted(self._refinesetupdict.keys()): 
- 159              for refinesetup, rietobjectslist, indicestuple, setupstep in \ 
- 160                      self._refinesetupdict[step]: 
- 161                  for rietobjects in rietobjectslist: 
- 162                      for rietobj in rietobjects: 
- 163                          try: 
- 164                              rietobj.resetgVisit() 
- 165                          except AttributeError, err: 
- 166                              wmsg = "Warning:  %-15s has no g-visit setup" % \ 
- 167                                      (rietobj.__class__.__name__) 
- 168                              print wmsg 
- 169                          # END-TRY 
- 170              # LOOP-OVER 
- 171          # LOOP-OVER 
- 172   
- 173          return 
-
         174   
- 175   
-
         176 -    def reset(self): 
-
         177          """ 
- 178          Reset the RefineGuide set up for a certain Fit instance 
- 179   
- 180          Argument:   (None) 
- 181           
- 182          Return  :   None 
- 183          """ 
- 184          # 1. Reset _gVisit 
- 185          for step in self._refinesetupdict.keys(): 
- 186              for refinesetup, rietobj, indicestuple, setupstep in \ 
- 187                      self._refinesetupdict[step]: 
- 188                  try: 
- 189                      rietobj.resetgVisit() 
- 190                  except AttributeError, err: 
- 191                      if _DEBUG is True: 
- 192                          errmsg = "Class %-20s has NO Attribute Method resetgVisit()"% \ 
- 193                              (rietobj.__class__.__name__) 
- 194                          print "Warning:  %-30s"% (errmsg) 
- 195                  # END-TRY 
- 196              # LOOP-OVER 
- 197          # LOOP-OVER 
- 198   
- 199          # 2. delete all the step 
- 200          self._refinesetupdict.clear() 
- 201          self._variableslist[:] = [] 
- 202   
- 203          # 3. unlock and remove guided Fit 
- 204          self._lock     = False 
- 205          self._guideFit = None 
- 206   
- 207          return    
-
         208   
- 209   
-
         210 -    def getGuideConfig(self, fit, stage=1): 
-
         211          """ 
- 212          Examine a diffpy.rietveldapi.Fit instance in order to  
- 213          1. set up a series of RefineSetup bound to corresponding  
- 214             diffpy.rietveldapi objects 
- 215          2. return how many steps to refine parameters  
- 216   
- 217          Virtual function 
- 218   
- 219          Arguements: 
- 220          - fit   :   diffpy.rietveldapi.Fit instance 
- 221   
- 222          Return  :   integer, number of steps for a sequence of refine 
- 223          """ 
- 224          if self.__class__.__name__ == "RefineGuide": 
- 225              errmsg = "RefineGuide is Virtual" 
- 226              raise NotImplementedError, errmsg 
- 227   
- 228          verifyType(fit, Fit) 
- 229   
- 230          # 1. Starting to build up a new refinement guidance  
- 231          self.reset() 
- 232   
- 233          # 2. Turn on interlock and Fit 
- 234          self._lock     = True 
- 235          self._guideFit = fit 
- 236   
- 237          return -1 
-
         238   
- 239   
-
         240 -    def getRefineAllConfig(self, fit, stage=1): 
-
         241          """ Obtain the information to refine all the paramaters controlled by this Guide! 
- 242   
- 243          Arguments: 
- 244          - fit   :   diffpy.rietveldapi.Fit 
- 245   
- 246          Return  :   3-tuple (constraint, rietobj, parname) 
- 247          """ 
- 248          errmsg = "Virtual Base Class and Will be Implemented In Extended Classes %-20s"% \ 
- 249              (self.__class__.__name__) 
- 250          raise NotImplementedError(errmsg) 
-
         251   
- 252   
-
         253 -    def getNumRefineSteps(self): 
-
         254          """ 
- 255          Return the (maximum) number of refinement steps scheduled by  
- 256          this refinement guide 
- 257   
- 258          Return  :   int, number of steps 
- 259          """ 
- 260          if _DEBUG is True: 
- 261              print "* * * * * * * * * * * * *** * * * * * *" 
- 262              for key in self._refinesetupdict.keys(): 
- 263                  print self._refinesetupdict[key] 
- 264              print "- - - - - - - - - - - - - - - - - - - -" 
- 265          # END-IF 
- 266   
- 267          return self._numsteps 
-
         268   
- 269   
-
         270 -    def getNumStages(self): 
-
         271          """ 
- 272          Report the number of stages of this RefineGuide to use 
- 273   
- 274          Return  :   integer, number of stages 
- 275          """ 
- 276          raise NotImplementedError("Not be clear about the purpose to use this") 
- 277   
- 278          # 1. Validity check 
- 279          if self._lock is not True: 
- 280              errmsg = "Interlock Error! SrRietveld does not allow" + \ 
- 281                      "to use getNumRefineSteps() to start and set up" 
- 282              raise RietError(errmsg) 
- 283   
- 284          # 2. Search for the maximum step number 
- 285          maxstage = 1 
- 286          for unitsetup, rietobj, indicestuple in self._refinesetupdict[1]: 
- 287              if unitsetup.getNumStages() > maxstage: 
- 288                  maxstage = unitsetup.getNumStages() 
- 289              
- 290          return maxstage 
-
         291   
- 292       
-
         293 -    def setGuideStep(self, fit, step=1, stage=1, dry=False): 
-
         294          """ Turn on variables scheduled at a certain step in current 
- 295          refine guidance 
- 296   
- 297          Arguements: 
- 298          fit         :   diffpy.rietveldapi.Fit instance 
- 299          step        :   int, step of refining some parameters in order 
- 300          stage       :   int, stage of refining these parameters 
- 301          dry         :   boolean, dry run means no mapVP, just return the values 
- 302   
- 303          Return      :   list of tuples (constraint, rietveld-object, parname) 
- 304          """ 
- 305          # 1. check the lock and turn off the interlock 
- 306          if self._lock is not True: 
- 307              errmsg = "Interlock Error!  SrRietveld does not allow " + \ 
- 308                      "to use setGuideStep()" 
- 309              raise FitConfigurationError(errmsg) 
- 310   
- 311          elif not fit == self._guideFit: 
- 312              errmsg = "%-15s:  input Fit instance is not Fit instance " % \ 
- 313                      (self.__class__.__name__) + "used in getNumRefineSteps()\n" 
- 314              errmsg = "%-20sCurrent Fit @ %-20s   INput Fit @ %-20s"% \ 
- 315                  ("", self._guideFit.__repr__(), fit.__repr__()) 
- 316              raise FitConfigurationError(errmsg)    
- 317          # END-IF=ELSE 
- 318   
- 319          # 2. set unit refine setups 
- 320          if self._refinesetupdict.has_key(step):  
- 321              # With proper definition of this step 
- 322              allnewlist = [] 
- 323              for refinesetup, rietobjslist, indices, setupstep in self._refinesetupdict[step]: 
- 324                  newvartuplelist = refinesetup.setToRefine(rietobjslist, indices,  
- 325                          stage, setupstep, dry) 
- 326                  self._variableslist.extend(newvartuplelist) 
- 327                  allnewlist.extend(newvartuplelist) 
- 328          else: 
- 329              # Warning 
- 330              availablesteps = self._refinesetupdict.keys() 
- 331              wmsg = "Warning! Class %-20s Does Not Have Step %-5s\n" % (self.__class__.__name__, step) + \ 
- 332                      "Available Steps Include %-30s" % (availablesteps) 
- 333              print wmsg 
- 334              allnewlist = []  
- 335          # END-TRY-EXCEPT 
- 336   
- 337          return allnewlist 
-
         338   
- 339   
-
         340 -    def getRefinedVariablesList(self): 
-
         341          """ get the list of refined variables with necessary information, 
- 342          i.e., self._variableslist 
- 343   
- 344          Return  :   list of 3-tuples 
- 345          """ 
- 346          return self._variableslist     
-
         347       
- 348   
-
         349 -    def generateRefineSetupDictionary(self, refinesetuplist, stage = 1, refineseq = False): 
-
         350          """ Use temporary refinesetuplist to set up a dictionary 
- 351          (instance variable) to hold the RefineSetup, Rietveld Object and naming indices 
- 352          for each refinement procedure (step number starting from 1) 
- 353   
- 354          Argument: 
- 355          - refinesetuplist   :   list of 3-tuples:  
- 356                                  RefineSetup, list of list of Rietveld objects, list of int (indices) 
- 357          - stage             :   int  
- 358          - refineseq         :   boolean.    True:  Refine all refinesetup in sequence 
- 359                                              False: Refine all refinesetup in parallel 
- 360   
- 361          Return              :   None 
- 362          """ 
- 363          stagestep = 0 
- 364          self._numsteps = 0 
- 365       
- 366          for refinesetup, rietobjects, indices in refinesetuplist: 
- 367   
- 368              # 1. validation 
- 369              if not isinstance(rietobjects, list): 
- 370                  errmsg = "Input rietobjects in refinesetuplist is not list" 
- 371                  raise NotImplementedError, errmsg 
- 372              else: 
- 373                  for rietobjs in rietobjects: 
- 374                      if not isinstance(rietobjs, list): 
- 375                          errmsg = "Input rietobjects' item in refinesetuplist is not list" 
- 376                          raise NotImplementedError, errmsg 
- 377                      # END-IF 
- 378                  # LOOP-OVER 
- 379              # END-IF 
- 380   
- 381              # 2. set up the dictionary to refine 
- 382              numrefinesteps = refinesetup.getNumRefineSteps(stage) 
- 383   
- 384              for step in xrange(1, numrefinesteps + 1): 
- 385                  # 2.1 calcualte complete-step number for this refine-setup 
- 386                  completestep = stagestep + step 
- 387   
- 388                  # 2.2 check the dictionary setup and validate 
- 389                  if not self._refinesetupdict.has_key(completestep): 
- 390                      self._refinesetupdict[completestep] = [] 
- 391                  elif refineseq is True: 
- 392                      errmsg = "In refine-sequential mode, any step should only as one refinesetup" 
- 393                      raise NotImplementedError, errmsg 
- 394   
- 395                  # 2.3 set up dictionary 
- 396                  self._refinesetupdict[completestep].append( (refinesetup, rietobjects, indices, step) ) 
- 397              # LOOP-OVER 
- 398   
- 399              # 3. update stage step and _numstep 
- 400              if refineseq is True: 
- 401                  # Sequential-mode:  accumulate refine steps number 
- 402                  stagestep += numrefinesteps 
- 403                  self._numsteps += numrefinesteps 
- 404              else: 
- 405                  # Parallel-mode:  get the max refine steps number 
- 406                  if numrefinesteps > self._numsteps: 
- 407                      self._numsteps = numrefinesteps 
- 408              # END-IF-ELSE 
- 409   
- 410          # LOOP-OVER 
- 411       
- 412          # 4. Clear up the setup validation 
- 413          self.resetVisitRecord() 
- 414   
- 415          return self._numsteps 
-
         416   
- 417       
-
         418 -    def generateRefineSetup(self, rietveldobjects, stage = 1): 
-
         419          """ Generate RefinementSetup for this specific RefineGuide 
- 420   
- 421          Argument: 
- 422          - rietveldobjects   :   list, of list of Rietveld objects 
- 423                                  [ [main-rietveld-obj, help-1, ...], [main-rietveld-obj, ..], ...] 
- 424          - stage             :   int 
- 425   
- 426          Return              :   RefineSetup 
- 427          """ 
- 428          errmsg = "Virtual method serving as interface" 
- 429          raise NotImplementedError, errmsg 
- 430   
- 431          return 
-
         432   
- 433       
-
         434 -    def turnOff(self, fit): 
-
         435          """ turn the parameters/variables off from refining, 
- 436          all the parameters/variables are turned on by this RefineGuide 
- 437   
- 438          Arguement: 
- 439          - fit   :   diffpy.rietveldapi.Fit instance 
- 440   
- 441          Return  :   None 
- 442          """ 
- 443          # turn lock and turn off 
- 444          self._lock = False 
- 445   
- 446          return 
-
         447   
- 448  # END Class: RefineGuide 
- 449   
- 450   
-
         451 -class InstrumentGuide(RefineGuide): 
-
         452      """ Guidance for instrument related parammeters 
- 453   
- 454      Assumption: 
- 455      1. the parameters belonged to different instrument setup  
- 456         must be independent, i.e., they can be refined  
- 457         simultaneously 
- 458      """ 
-
         459 -    def getComponents(self, fit): 
-
         460          """ Get RietveldComponents from Fit instance 
- 461          This function is intended to be overriden in special case 
- 462   
- 463          Arguement: 
- 464          - fit   :   Fit instance 
- 465   
- 466          Return  :   list of list RietveldComponent 
- 467          """ 
- 468          componentslist = fit.getComponentByInstrument() 
- 469   
- 470          return componentslist 
-
         471   
- 472   
-
         473 -    def getGuideConfig(self, fit, stage=1): 
-
         474          """ 
- 475          return how many steps to refine parameters  
- 476   
- 477          Arguements: 
- 478          - fit       :   diffpy.rietveldapi Fit instance 
- 479   
- 480          Return      -   integer, number of steps for a sequence of refine 
- 481          """ 
- 482          # 1. Call base class 
- 483          RefineGuide.getGuideConfig(self, fit, stage) 
- 484   
- 485          # 2. Get components: list of list 
- 486          componentslist = self.getComponents(fit) 
- 487   
- 488          # 3. Collect list of RietveldComponent 
- 489          refinesetupslist = [] 
- 490          cindex = 0 
- 491          for components in componentslist: 
- 492              # 3.1 Get Rietveld objects 
- 493              rietobjectslist = [] 
- 494              for component in components: 
- 495                  rietobjects = self.getRietveldObjects(component) 
- 496                  rietobjectslist.append(rietobjects) 
- 497              # LOOP-OVER 
- 498   
- 499              # 3.2 Generate RefineSetup for this Component 
- 500              refinesetup = self.generateRefineSetup(rietobjectslist, stage) 
- 501   
- 502              # 3.3 Process and store 
- 503              numsteps = refinesetup.getNumRefineSteps(stage) 
- 504   
- 505              refinesetupslist.append( (refinesetup, rietobjectslist, [cindex]) ) 
- 506               
- 507              # 3.4 Loop control variable update 
- 508              cindex += 1 
- 509          # LOOP-OVER 
- 510   
- 511          # 4. Generate refinesetupdict[] 
- 512          self.generateRefineSetupDictionary(refinesetupslist, stage) 
- 513   
- 514          return self._numsteps 
-
         515   
- 516   
-
         517 -    def getRefineAllConfig(self, fit, stage=1): 
-
         518          """ 
- 519          Obtain the information to refine all the paramaters  
- 520          controlled by this Guide 
- 521   
- 522          Arguments: 
- 523          - fit   :   diffpy.rietveldapi.Fit 
- 524          - stage :   int 
- 525   
- 526          Return  :   3-tuple (constraint, rietobj, parname) 
- 527          """ 
- 528          # 1. Initialization 
- 529          rietobjectslist = [] 
- 530          guidedvartuplist = [] 
- 531   
- 532          # 2. Collect list of (background, pattern) 
- 533          componentslist = fit.getComponentByInstrument() 
- 534   
- 535          # 3. Obtain all Rietveld objects to refine by this guide 
- 536          cindex = 0 
- 537          for components in componentslist: 
- 538              # 3.1 Get Rietveld objects 
- 539              rietobjectslist = [] 
- 540              rietobjectset = [] 
- 541              for component in components: 
- 542                  rietobjects = self.getRietveldObjects(component) 
- 543                  rietobjectslist.append(rietobjects) 
- 544                  rietobjectset.append(rietobjects[0]) 
- 545              # LOOP-OVER 
- 546   
- 547              # 3.2 Generate RefineSetup for this Component 
- 548              refinesetup = self.generateRefineSetup(rietobjectslist, stage) 
- 549   
- 550              # 3.3 Set to refine-all 
- 551              guidedvartupe = refinesetup.getRefineInfo(rietobjectsset, cindex,  
- 552                      step = "all", stage = stage) 
- 553              guidedvartuplist.extend(guidedvartup) 
- 554   
- 555               
- 556              # 3.4 Loop control variable update 
- 557              cindex += 1 
- 558          # LOOP-OVER 
- 559   
- 560          return guidedvartuplist   
-
         561   
- 562  # END-DEF-CLASS InstrumentGuide 
- 563   
- 564   
-
         565 -class MeasurementGuide(RefineGuide): 
-
         566      """ MeasurementGuide is the guidance for parameters related to  
- 567      specific measurement, for example 
- 568      1. same instrument, same sample, same time, but different banks 
- 569      2. same instrument, different sample,  
- 570      3. different instrument, same sample, different time, 
- 571   
- 572      Assumption:  Each pattern/RietveldComponent is an individual measurement 
- 573      """ 
-
         574 -    def getGuideConfig(self, fit, stage=1): 
-
         575          """ Examine a diffpy.rietveldapi.Fit instance in order to  
- 576          1. set up a series of RefineSetup bound to corresponding  
- 577             diffpy.rietveldapi objects 
- 578          2. return how many steps to refine parameters  
- 579   
- 580          Virtual function 
- 581   
- 582          Arguements: 
- 583          - fit   :   diffpy.rietveldapi.Fit instance 
- 584          - stage :   int,  
- 585   
- 586          Return  :   integer, number of steps for a sequence of refine     
- 587          """ 
- 588          # 1. Call Base Class 
- 589          RefineGuide.getGuideConfig(self, fit, stage) 
- 590   
- 591          # 2. Collect list of (background, pattern) 
- 592          componentslist = fit.getComponentByMeasurement() 
- 593   
- 594          refinesetupslist = [] 
- 595          cindex = 0 
- 596          for components in componentslist: 
- 597              # Assumption: each components has one and only one component  
- 598              if len(components) != 1: 
- 599                  errmsg = "MeasurmentGuide: Assumption is that each measurement " + \ 
- 600                          "related to one individual pattern. " + \ 
- 601                          "This assumption is violated here" 
- 602                  raise NotImplementedError, errmsg 
- 603              else: 
- 604                  component = components[0] 
- 605              # END-IF-ELSE 
- 606   
- 607              # 3.1 Get Rietveld Objects (some case may require more) 
- 608              rietobjects = self.getRietveldObjects(component) 
- 609              rietobjectslist = [rietobjects] 
- 610   
- 611              # 3.2 Generate RefineSetup for this Component 
- 612              refinesetup = self.generateRefineSetup(rietobjectslist, stage) 
- 613   
- 614              # 3.3 Process and store 
- 615              refinesetupslist.append( (refinesetup, rietobjectslist, [cindex]) ) 
- 616               
- 617              # 3.4 Loop control variable update 
- 618              cindex += 1 
- 619   
- 620          # LOOP-OVER 
- 621   
- 622          # 4. Generate refinesetupdict[] 
- 623          self.generateRefineSetupDictionary(refinesetupslist) 
- 624   
- 625          return self._numsteps 
-
         626   
- 627             
-
         628 -    def getRefineAllConfig(self, fit, stage=1): 
-
         629          """ 
- 630          Obtain the information to refine all the paramaters  
- 631          controlled by this Guide 
- 632   
- 633          Arguments: 
- 634          - fit   :   diffpy.rietveldapi.Fit 
- 635          - stage :   int 
- 636   
- 637          Return  :   3-tuple (constraint, rietobj, parname) 
- 638          """ 
- 639          # 1. Initialization 
- 640          rietobjectslist = [] 
- 641          guidedvartuplist = [] 
- 642   
- 643          # 2. Collect list of (background, pattern) 
- 644          componentslist = fit.getComponentByMeasurement() 
- 645   
- 646          # 3. Obtain all Rietveld objects to refine by this guide 
- 647          cindex = 0 
- 648          for components in componentslist: 
- 649              # Assumption: each components has one and only one component  
- 650              if len(components) != 1: 
- 651                  errmsg = "MeasurmentGuide: Assumption is that each measurement " + \ 
- 652                          "related to one individual pattern. " + \ 
- 653                          "This assumption is violated here" 
- 654                  raise NotImplementedError, errmsg 
- 655              else: 
- 656                  component = components[0] 
- 657              # END-IF-ELSE 
- 658   
- 659              # 3.1 Get Rietveld Objects (some case may require more) 
- 660              rietobjects = self.getRietveldObjects(component) 
- 661              rietobjectlist.append( (rietobjects, [cindex]) ) 
- 662   
- 663          # LOOP-OVER 
- 664   
- 665          # 4. set up refine guide 
- 666          for rietobjects, indicies in rietobjectlist: 
- 667              # 3.2 Generate RefineSetup for this Component 
- 668              refinesetup = self.generateRefineSetup(rietobjects, stage) 
- 669              guidedvartupe = refinesetup.getRefineInfo(rietobjects[0], indicies,  
- 670                      step = "all", stage = stage) 
- 671              guidedvartuplist.extend(guidedvartup) 
- 672   
- 673          return guidedvartuplist   
-
         674   
- 675   
-
         676 -    def getRietveldObjects(self, component): 
-
         677          """ get the Rietveld object from RietveldComponent 
- 678   
- 679          Argument:    
- 680          - component :   RietveldComponent 
- 681   
- 682          Convention  :   In SrRietveld, the first item in the return list 
- 683                          is the major Rietveld object to set up refine 
- 684                          The others are there for help. 
- 685                          The sequence will be specified in each extended class 
- 686   
- 687          Return      :   list, [rietveld-object (main), rietveld-object, ..] 
- 688          """ 
- 689          errmsg = "Virtual method serving as interface" 
- 690          raise NotImplementedError, errmsg 
- 691   
- 692          return 
-
         693   
- 694   
- 695  # END-CLASS-DEFINITION:  MeasurementGuide 
- 696   
- 697   
-
         698 -class SampleGuide(RefineGuide): 
-
         699      """ SampleGuide is the guidance for parameters related to  
- 700      specific sample, including 
- 701      1. sample property correction 
- 702      2. lattice size 
- 703   
- 704      """ 
-
         705 -    def getGuideConfig(self, fit, stage=1): 
-
         706          """ Examine a diffpy.rietveldapi.Fit instance in order to  
- 707          1. set up a series of RefineSetup bound to corresponding  
- 708             diffpy.rietveldapi objects 
- 709          2. return how many steps to refine parameters  
- 710   
- 711          Virtual function 
- 712   
- 713          Arguements: 
- 714          - fit   :   diffpy.rietveldapi.Fit instance 
- 715          - stage :   int,  
- 716   
- 717          Return  :   integer, number of steps for a sequence of refine     
- 718          """ 
- 719          # 1. Call Base Class 
- 720          RefineGuide.getGuideConfig(self, fit, stage) 
- 721   
- 722          # 2. Collect list of (background, pattern) 
- 723          componentslist = fit.getComponentBySample() 
- 724   
- 725          # 3. Set RefineSetup 
- 726          cindex = 0 
- 727          for components in componentslist: 
- 728              # 3.1 Get Rietveld Objects (some case may require more) 
- 729              rietobjectslist = [] 
- 730              rietobjectset = [] 
- 731              for component in components: 
- 732                  rietobjects = self.getRietveldObjects(component) 
- 733                  rietobjectslist.extend( rietobjects ) 
- 734   
- 735                  templist = [] 
- 736                  for rietobject in rietobjects: 
- 737                      rietobj = rietobject[0] 
- 738                  rietobjectset.append( rietobj ) 
- 739              # LOOP-OVER 
- 740   
- 741              # 3.2 Generate RefineSetup for this Component 
- 742              refinesetup = self.generateRefineSetup(rietobjectset, stage) 
- 743   
- 744              # 3.3 Process and store 
- 745              refinesetupslist.append( (refinesetup, rietobjectset, [cindex]) ) 
- 746               
- 747              # 3.4 Loop control variable update 
- 748              cindex += 1 
- 749          # LOOP-OVER 
- 750   
- 751          # 4. Generate refinesetupdict[] 
- 752          self.generateRefineSetupDictionary(refinesetuplist) 
- 753   
- 754          return self._numsteps 
-
         755   
- 756             
-
         757 -    def getRefineAllConfig(self, fit, stage=1): 
-
         758          """ 
- 759          Obtain the information to refine all the paramaters  
- 760          controlled by this Guide 
- 761   
- 762          Arguments: 
- 763          - fit   :   diffpy.rietveldapi.Fit 
- 764          - stage :   int 
- 765   
- 766          Return  :   3-tuple (constraint, rietobj, parname) 
- 767          """ 
- 768          # 1. Initialization 
- 769          rietobjectslist = [] 
- 770          guidedvartuplist = [] 
- 771   
- 772          # 2. Collect list of (background, pattern) 
- 773          componentslist = fit.getComponentBySample() 
- 774   
- 775          # 3. Set RefineSetup 
- 776          cindex = 0 
- 777          for components in componentslist: 
- 778              # 3.1 Get Rietveld Objects (some case may require more) 
- 779              rietobjectslist = [] 
- 780              rietobjectset = [] 
- 781              for component in components: 
- 782                  rietobjects = self.getRietveldObjects(component) 
- 783                  rietobjectslist.append( rietobjects ) 
- 784                  rietobjectset.append( rietobjects[0] ) 
- 785              # LOOP-OVER 
- 786   
- 787              # 3.2 Generate RefineSetup for this Component 
- 788              refinesetup = self.generateRefineSetup(rietobjectset, stage) 
- 789   
- 790              # 3.3 Set up refine-all option 
- 791              guidedvartupe = refinesetup.getRefineInfo(rietobjectset, [cindex],  
- 792                      step = "all", stage = stage) 
- 793              guidedvartuplist.extend(guidedvartup) 
- 794   
- 795              # 3.4 Loop control variable update 
- 796              cindex += 1 
- 797          # LOOP-OVER 
- 798   
- 799          return guidedvartuplist   
-
         800   
- 801  # END-CLASS-DEFINITION:  SampleGuide 
- 802   
- 803   
-
         804 -class AtomGuide(RefineGuide): 
-
         805      """ StructureGuide is to guide the refinement 
- 806      on parameters related to structure model 
- 807   
- 808      Assumption:  
- 809      1. Rietveld parameters belonged to different phases are not correlated 
- 810   
- 811      Algorithm applied: 
- 812      -  refine one Rietveld object, such as one atom's position (x, y, z), or 
- 813         one atom's Biso at each atom. 
- 814      -  do not consider the efficiency to refine two atom's parameters  
- 815         simulataneously if they belonged to different phase; 
- 816         This may increase some unnecessary steps, but it will keep the algorithm 
- 817         and behavior of the codes more clear; 
- 818         a) In multiple-phase situation, whether refining 2 or more phases together  
- 819            can cause some problem is unknown 
- 820         b) In co-refinement on different material situation, since it is usually 
- 821            applied to instrument calibration, the structure of material is 
- 822            simple 
- 823      """ 
-
         824 -    def getGuideConfig(self, fit, stage=1): 
-
         825          """ Examine a diffpy.rietveldapi.Fit instance in order to  
- 826          1. set up a series of RefineSetup bound to corresponding  
- 827             diffpy.rietveldapi objects 
- 828          2. return how many steps to refine parameters  
- 829   
- 830          Virtual function 
- 831   
- 832          Arguements: 
- 833          - fit   :   diffpy.rietveldapi.Fit instance 
- 834          - stage :   int,  
- 835   
- 836          Return  :   integer, number of steps for a sequence of refine     
- 837          """ 
- 838          # 1. Call Base Class 
- 839          RefineGuide.getGuideConfig(self, fit, stage) 
- 840   
- 841          # 2. Initialization 
- 842          rietobjectlist = [] 
- 843   
- 844          # 3. Collect list of (background, pattern) 
- 845          phaseslist = fit.getStructurePhaseList() 
- 846           
- 847          # 4. Access all object: 
- 848          for phase in phaseslist: 
- 849              numatoms = phase.getNumAtoms() 
- 850   
- 851              for aindex in xrange(numatoms): 
- 852                  # 1. get atom 
- 853                  atom = phase.getAtom(aindex) 
- 854                   
- 855                  # 2. check this atom been visited or not 
- 856                  # FIXME - What's the purpose?  Shall I remove this? 
- 857                  if atom.gVisit() is False: 
- 858                      atom.setgVisit() 
- 859                  else: 
- 860                      errmsg = "Why this atom is visited twice? " + \ 
- 861                              "atom is %-10s indexed as %-10s" % (atom, aindex) + \ 
- 862                              "# of phase: %-5s In Guide %-20s" % (len(phaseslist),  
- 863                                      self.__class__.__name__) 
- 864                      raise NotImplementedError, errmsg 
- 865                  # END-IF-ELSE 
- 866   
- 867                  # 3. get Rietveld objects and add to dictionary 
- 868                  rietobject = self.getRietveldObjects(atom) 
- 869                  rietobjectlist.append( [rietobject, atom] ) 
- 870              # LOOP-OVER          
- 871          # LOOP-OVER -- phase 
- 872   
- 873          # 5. Sort the atoms in each phase and find out the maximum refinement steps 
- 874          rietobjectlist = UR.sortByAtomNumber(rietobjectlist) 
- 875   
- 876          # 5. get RefinementSetup 
- 877          refinesetuplist = [] 
- 878          step = 0 
- 879          for rietobject, atom in rietobjectlist: 
- 880              rietobjects = [[rietobject, atom]] 
- 881              refinesetup = self.generateRefineSetup(rietobjects, stage)  
- 882              refinesetuplist.append( (refinesetup, rietobjects, [step]) ) 
- 883              step += 1 
- 884          # LOOP-OVER  
- 885   
- 886          # 7. Generate refinesetupdict[] 
- 887          self.generateRefineSetupDictionary(refinesetuplist, refineseq = True) 
- 888   
- 889          return self._numsteps 
-
         890   
- 891   
-
         892 -    def getRefineAllConfig(self, fit, stage=1): 
-
         893          """ 
- 894          Obtain the information to refine all the paramaters controlled by this Guide! 
- 895   
- 896          Arguments: 
- 897          - fit   :   diffpy.rietveldapi.Fit 
- 898   
- 899          Return  :   3-tuple (constraint, rietobj, parname) 
- 900          """ 
- 901          # 1.  Initialization 
- 902          guidedvartuplist = [] 
- 903   
- 904          # 2. Initialization 
- 905          rietobjectslist = [] 
- 906   
- 907          # 3. Collect list of (background, pattern) 
- 908          phaseslist = fit.getPhases() 
- 909   
- 910          # 4. Access all object: 
- 911          rietobjectdict = {} 
- 912          phaseID = 0 
- 913          for phase in phaseslist: 
- 914              raise NotImplementedError, "Check the following return can be [ [..], [..], ..]" 
- 915   
- 916              numatoms = phase.getNumAtoms() 
- 917              for aindex in xrange(numatoms): 
- 918                  # 1. get atom 
- 919                  atom = phase.getAtom(aindex) 
- 920                   
- 921                  # 2. check this atom been visited or not 
- 922                  # FIXME - What's the purpose?  Shall I remove this? 
- 923                  if atom.gVisit() is False: 
- 924                      rietobjectlist.append(atom) 
- 925                      atom.setgVisit() 
- 926                  else: 
- 927                      errmsg = "Why this atom is visited twice?" 
- 928                      raise NotImplementedError, errmsg 
- 929                  # END-IF-ELSE 
- 930   
- 931                  # 3. get Rietveld objects and add to dictionary 
- 932                  rietobject = self.getRietveldObjects(self, atom) 
- 933                  rietobjectdict[phaseID].append( [rietobject, atom] ) 
- 934   
- 935              # LOOP-OVER          
- 936              phaseID += 1 
- 937          # LOOP-OVER -- phase 
- 938   
- 939          # 5.  Get UnitRefinementSetup 
- 940          rietid = 0 
- 941          for phaseid in rietobjectdict.keys(): 
- 942              for rietobject, atom in rietobjectdict[phaseid]: 
- 943                  refinesetup = self.generateRefineSetup(fit, rietobject)  
- 944                  guidedvartup = rietunitsetup.getRefineInfo(rietobject,  
- 945                          [rietid], step = "all") 
- 946                  guidedvartuplist.extend(guidedvartup) 
- 947              # LOOP-OVER 
- 948          # LOOP-OVER 
- 949   
- 950          return guidedvartuplist 
-
         951   
- 952  # END-DEF-CLASS:  StructureGuide 
- 953   
- 954   
- 955   
-
         956 -class AbsorptionCorrectionGuide(RefineGuide): 
-
         957      """ 
- 958      Refine guide TOF absorption correction 
- 959      """ 
-
         960 -    def getRietveldObjects(self, component): 
-
         961          """ get the Rietveld object from RietveldComponent 
- 962   
- 963          Argument:    
- 964          - component :   RietveldComponent 
- 965   
- 966          Convention  :   In SrRietveld, the first item in the return list 
- 967                          is the major Rietveld object to set up refine 
- 968                          The others are there for help. 
- 969                          The sequence will be specified in each extended class 
- 970   
- 971          Return      :   list, [rietveld-object (main), rietveld-object, ..] 
- 972          """ 
- 973          rietobjectslist = [] 
- 974   
- 975          numphase = component.getNumPhases() 
- 976          for phaseid in xrange(numphase): 
- 977              abscorr = comp.getPhase(phaseid).getAbsorptionCorrection() 
- 978              rietobjectslist.append( [abscorr] ) 
- 979   
- 980          return rietobjectslist 
-
         981   
- 982   
-
         983 -    def generateRefineSetup(self, rietveldobjects, stage = 1): 
-
         984          """ Generate RefinementSetup for this specific RefineGuide 
- 985   
- 986          Argument: 
- 987          - rietveldobjects   :   list, of list, of Rietveld objects 
- 988          - stage             :   int 
- 989   
- 990          Return              :   RefineSetup 
- 991          """ 
- 992          refinesetup = UR.AbsorptionCorrectionRefineSetup(self._guideFit, rietveldobjects) 
- 993   
- 994          return refinesetup  
-
         995       
- 996  # END CLASS AbsorptionCorrectionGuide(SampleGuide) 
- 997   
- 998   
-
         999 -class ADPGuide(AtomGuide): 
-
        1000      """ class to guide refinement on atomic displacement factor 
-1001      """ 
-
        1002 -    def getRietveldObjects(self, atom): 
-
        1003          """ Get atom object of given atom object 
-1004   
-1005          Argument: 
-1006          - atom  :   Atom 
-1007   
-1008          Return  :   ADP 
-1009          """ 
-1010          rietobject = atom.getADP() 
-1011   
-1012          return rietobject 
-
        1013   
-1014   
-
        1015 -    def generateRefineSetup(self, rietobjectlist, stage = 1):  
-
        1016          """ Generate RefineSetup 
-1017   
-1018          Argument: 
-1019          - fit           :   Fit object 
-1020          - rietobject    :   list, of list of Rietveld object 
-1021          - state         :   int,  
-1022   
-1023          Return          :   ADPRefineSetup 
-1024          """ 
-1025          refinesetup = UR.genADPRefineSetup(self._guideFit, rietobjectlist, stage) 
-1026   
-1027          return refinesetup  
-
        1028   
-1029  # END -- class ADPGuide(RefineGuide) 
-1030   
-1031   
-
        1032 -class BackgroundGuide(MeasurementGuide): 
-
        1033      """ Guidance for backgrounds parameters 
-1034      """ 
-
        1035 -    def getRietveldObjects(self, component): 
-
        1036          """ get the Rietveld object from RietveldComponent 
-1037   
-1038          Argument:    
-1039          - component :   RietveldComponent 
-1040   
-1041          Return      :   list, [Background object, Pattern object] 
-1042          """ 
-1043          # 1. Get instance 
-1044          background = component.getBackground() 
-1045          pattern    = component.getPattern() 
-1046   
-1047          # 2. Validity check 
-1048          if pattern is None: 
-1049              errmsg = "No Pattern Defined with Background" 
-1050              raise RietError(errmsg) 
-1051   
-1052          return ( [background, pattern] ) 
-
        1053   
-1054   
-
        1055 -    def generateRefineSetup(self, rietveldobjects, stage = 1): 
-
        1056          """ Generate RefinementSetup for this specific RefineGuide 
-1057   
-1058          Argument: 
-1059          - rietveldobjects   :   list, of list, of Rietveld objects 
-1060          - stage             :   int 
-1061   
-1062          Return              :   RefineSetup 
-1063          """      
-1064          refinesetup = UR.genBackgroundRefineSetup(self._guideFit, rietveldobjects, stage) 
-1065   
-1066          return refinesetup 
-
        1067   
-1068  # END-CLASS-DEF: BackgroundGuide 
-1069   
-1070   
-
        1071 -class ExpDecayGuide(InstrumentGuide): 
-
        1072      """ Refinement guidance on exponential decay parameters 
-1073      Algorithm: 
-1074          the exponential decay/peak profile of different phases shouldn't interefere with each other,  
-1075          because they are determining the peaks' shape belonged to different sets, 
-1076          therefore,  
-1077          1. exponential decay parameters belonged to different phases but of same Rietveld Component 
-1078             must be same! 
-1079          2. exponential decay parameters belonged to different patterns (different instruments) 
-1080             can be refined simultaneously  
-1081          From assumption 1 and 2, the conclusion is that 
-1082          EVERY Expoenetial Decay IS INDEPENDENT OF THE OTHERS Class to guide the refine of Peak-Shape 
-1083      """ 
-
        1084 -    def getRietveldObjects(self, component): 
-
        1085          """ Get Pattern that holds the zero-shift parameter 
-1086   
-1087          Argument:    
-1088          - component :   RietveldComponent 
-1089   
-1090          Return      :   list, [rietveld-object (main), rietvel] 
-1091          """ 
-1092          rietobjectslist = [] 
-1093   
-1094          numphase = component.getNumPhases() 
-1095          for phaseid in xrange(numphase): 
-1096              expdecay = component.getPhase(phaseid).getExpDecayFunction() 
-1097              rietobjectslist.extend( [expdecay] ) 
-1098          # LOOP-OVER 
-1099   
-1100          return rietobjectslist 
-
        1101   
-1102   
-
        1103 -    def generateRefineSetup(self, rietveldobjects, stage = 1): 
-
        1104          """ Generate RefinementSetup for this specific RefineGuide 
-1105   
-1106          Argument: 
-1107          - rietveldobjects   :   list of list of Rietveld objects 
-1108          - stage             :   int 
-1109   
-1110          Return              :   RefineSetup 
-1111          """ 
-1112          refinesetup = UR.genTOFExpDecayRefinement(self._guideFit, rietveldobjects, stage) 
-1113                   
-1114          return refinesetup 
-
        1115   
-1116  # END-DEF-CLASS ExpDecayGuide 
-1117   
-1118   
-
        1119 -class FractionalCoordinateGuide(AtomGuide): 
-
        1120      """ Class to guide refinement on atoms' fractional coordinates 
-1121      """ 
-
        1122 -    def getRietveldObjects(self, atom): 
-
        1123          """ Get atom object of given atom object 
-1124   
-1125          Argument: 
-1126          - atom  :   Atom 
-1127   
-1128          Return  :   Atom 
-1129          """ 
-1130          return atom 
-
        1131   
-1132   
-
        1133 -    def generateRefineSetup(self, rietobjectslist, stage): 
-
        1134          """ Generate RefineSetup 
-1135   
-1136          Argument: 
-1137          - rietobjectslist   :   list of list of Rietveld objects 
-1138          - stage :   int 
-1139   
-1140          Return          :   AtomFractionCoordinateRefineSetup 
-1141          """ 
-1142          refinesetup = UR.genAtomFractionalPositionSetup(self._guideFit,  
-1143                  rietobjectslist, stage) 
-1144   
-1145          return refinesetup  
-
        1146   
-1147  # END-DEF-CLASS:  FractionalCoordinateGuide 
-1148   
-1149   
-
        1150 -class LatticeGuide(RefineGuide): 
-
        1151      """ Refinement guidance on lattice parameter 
-1152      We allow the freedom for each Phase of each Component to 
-1153      have different lattice parameter.  
-1154      For example 
-1155      1. MnAs is measured by both NPDF and RAPDF.  A corefinement 
-1156         is preferred.  Because the temperatures at the experiment 
-1157         can be different, the lattice parameters then are different 
-1158         between two measurement 
-1159   
-1160      """ 
-
        1161 -    def getGuideConfig(self, fit, stage=1): 
-
        1162          """ Examine a diffpy.rietveldapi.Fit instance in order to  
-1163          1. set up a series of RefineSetup bound to corresponding  
-1164             diffpy.rietveldapi objects 
-1165          2. return how many steps to refine parameters  
-1166   
-1167          1. Necessary parameters includes 
-1168          a, b, c 
-1169          alpha, beta, gamma if they are not 90 
-1170   
-1171          2. Constraint will be set according to the space group 
-1172   
-1173          3. extra: need to consider the case multiple patterns share phases!      Arguements: 
-1174          - fit   :   diffpy.rietveldapi.Fit instance 
-1175   
-1176          Arguements: 
-1177          - fit   :   diffpy.rietveldapi.Fit instance 
-1178          - stage :   int,  
-1179   
-1180          Return  :   integer, number of steps for a sequence of refine     
-1181          """ 
-1182          # 1. Call Base Class 
-1183          RefineGuide.getGuideConfig(self, fit, stage) 
-1184   
-1185          # 2. Initialization 
-1186          refinesetuplist = [] 
-1187   
-1188          # 3. Collect list of lattices 
-1189          latticeslist = UR.getLatticeInGroup(fit) 
-1190   
-1191          # 4. Set up RefineSetup 
-1192          lindex = 0 
-1193          for lattices, spcgrp in latticeslist: 
-1194              # 1. get refinesetup 
-1195              rietobjectslist = [] 
-1196              for lattice in lattices: 
-1197                  rietobjectslist.append( [lattice] ) 
-1198   
-1199              refinesetup = UR.genLatticeRefineSetup(fit, rietobjectslist, spcgrp) 
-1200   
-1201              # 2. expand the list 
-1202              refinesetuplist.append( (refinesetup, rietobjectslist, [lindex]) ) 
-1203   
-1204              # 3. update loop variable 
-1205              lindex += 1 
-1206          # LOOP-OVER 
-1207   
-1208          # 4. Generate refinesetupdict[] 
-1209          self.generateRefineSetupDictionary(refinesetuplist) 
-1210   
-1211          return self._numsteps 
-
        1212   
-1213   
-
        1214 -    def getRefineAllConfig(self, fit, stage=1): 
-
        1215          """ Obtain the information to refine all the paramaters  
-1216          controlled by this Guide 
-1217   
-1218          Arguments: 
-1219          - fit   :   diffpy.rietveldapi.Fit 
-1220          - stage :   int 
-1221   
-1222          Return  :   3-tuple (constraint, rietobj, parname) 
-1223          """ 
-1224          # 1. Initialization 
-1225          rietobjectslist = [] 
-1226          guidedvartuplist = [] 
-1227   
-1228          # 2. Collect list of lattices 
-1229          latticeslist = UR.getLatticeInGroup(fit) 
-1230   
-1231          # 3. Set up RefineSetup 
-1232          lindex = 0 
-1233          for lattices, spcgrp in latticeslist: 
-1234              # 3.1 get refinesetup 
-1235              refinesetup = UR.genLatticeRefineSetup(fit, lattices, spcgrp) 
-1236   
-1237              # 3.2 set up guidedvartup 
-1238              guidedvartup = refinesetup.getRefineInfo(lattices, [lindex],  
-1239                      step="all") 
-1240              guidedvartuplist.extend(guidedvartup) 
-1241               
-1242              # 3.3 Debug check 
-1243              if _DEBUG is True: 
-1244                  for lattice in lattices: 
-1245                      if lattice.gVisit is True: 
-1246                          errmsg = "This Lattice is Visited!" 
-1247                          raise NotImplementedError, errmsg 
-1248                      # END-IF 
-1249                  # LOOP-OVER 
-1250              # END-IF 
-1251   
-1252          # LOOP-OVER 
-1253   
-1254          return guidedvartuplist 
-
        1255           
-1256  # END [ class LatticeGuide(RefineGuide)] 
-1257   
-1258   
-
        1259 -class OccupancyGuide(RefineGuide): 
-
        1260      """ Refine guide on atom's occupancy 
-1261      """ 
-
        1262 -    def getRietveldObjects(self, atom): 
-
        1263          """ Get atom object of given atom object 
-1264   
-1265          Argument: 
-1266          - atom  :   Atom 
-1267   
-1268          Return  :   Atom 
-1269          """ 
-1270          rietobject = atom 
-1271   
-1272          return rietobject 
-
        1273   
-1274       
-
        1275 -    def generateRefineSetup(self, rietobject, stage): 
-
        1276          """ Generate RefineSetup 
-1277   
-1278          Argument: 
-1279          - rietobject    :   Rietveld object 
-1280   
-1281          Return          :   ADPRefineSetup 
-1282          """ 
-1283          errmsg = "Have not implemented setting up occupancy right" 
-1284          raise NotImplementedError, errmsg 
-
        1285   
-1286  # END CLASS OccupancyGuide(RefineGuide) 
-1287   
-1288   
-
        1289 -class PeakShapeGuide(InstrumentGuide): 
-
        1290      """ 
-1291      Class to guide the refine of Peak-Shape 
-1292      """ 
-
        1293 -    def getRietveldObjects(self, component): 
-
        1294          """ Get Pattern that holds the zero-shift parameter 
-1295   
-1296          Argument:    
-1297          - component :   RietveldComponent 
-1298   
-1299          Return      :   list, [rietveld-object (main), rietvel] 
-1300          """ 
-1301          # FIXME multiple phases.  More experiments are required! 
-1302          rietobjectslist = [] 
-1303   
-1304          numphases = component.getNumPhases() 
-1305          for pindex in xrange(numphases): 
-1306              peakprofile = component.getPhase(pindex).getPeakProfile() 
-1307              rietobjectslist.extend( [peakprofile] ) 
-1308          # LOOP-OVER 
-1309   
-1310          return rietobjectslist  
-
        1311   
-1312   
-
        1313 -    def generateRefineSetup(self, rietveldobjectslist, stage = 1): 
-
        1314          """ Generate RefinementSetup for this specific RefineGuide 
-1315   
-1316          Argument: 
-1317          - rietveldobjectslist   :   list of list of Rietveld objects 
-1318                                      [ [..], [...], ...] 
-1319          - stage                 :   int 
-1320   
-1321          Return              :   RefineSetup 
-1322          """ 
-1323          refinesetup = UR.genPeakShapeRefineSetup(self._guideFit, rietveldobjectslist, stage) 
-1324           
-1325          return refinesetup   
-
        1326       
-1327  # END-DEF-CLASS PeakShapeGuide 
-1328   
-1329   
-
        1330 -class ScaleGuide(InstrumentGuide): 
-
        1331      """ Refinement guidance on scale factor 
-1332      """ 
-1333      # FIXME - How to let it guide a refinement on multiple-phase is unknown 
-
        1334 -    def getComponents(self, fit): 
-
        1335          """ Get RietveldComponents from Fit instance 
-1336          This function is intended to be overriden in special case 
-1337   
-1338          Arguement: 
-1339          - fit   :   Fit instance 
-1340   
-1341          Return  :   list of list RietveldComponent 
-1342          """ 
-1343          componentslist = fit.getComponentByMeasurement() 
-1344   
-1345          return componentslist 
-
        1346   
-1347   
-
        1348 -    def getRietveldObjects(self, component): 
-
        1349          """ Get Pattern that holds the zero-shift parameter 
-1350   
-1351          Argument:    
-1352          - component :   RietveldComponent 
-1353   
-1354          Return      :   list, [rietveld-object (main), rietvel] 
-1355          """ 
-1356          numphases = component.getNumPhases() 
-1357          for pindex in xrange(numphases): 
-1358              rietobject = component.getPhase(pindex).getPeakProfile() 
-1359   
-1360          # FIXME - ScaleGuide has not be compatible with multiple-phase model 
-1361          if numphases != 1: 
-1362              errmsg = "%-5 - Phase (multiple-phase) has not been handled" % \ 
-1363                      (numphases) 
-1364              raise NotImplementedError, errmsg 
-1365   
-1366          return ( [rietobject] ) 
-
        1367   
-1368   
-
        1369 -    def generateRefineSetup(self, rietveldobjects, stage = 1): 
-
        1370          """ Generate RefinementSetup for this specific RefineGuide 
-1371   
-1372          Argument: 
-1373          - rietveldobjects   :   list of list of Rietveld objects 
-1374          - stage             :   int 
-1375   
-1376          Return              :   RefineSetup 
-1377          """ 
-1378          refinesetup = UR.genScaleRefineSetup(self._guideFit, rietveldobjects, stage) 
-1379   
-1380          return refinesetup 
-
        1381   
-1382  # END -- class ScaleGuide 
-1383   
-1384   
-
        1385 -class WavelengthGuide(InstrumentGuide): 
-
        1386      """ Guidance to refine wavelength parameters 
-1387      """ 
-
        1388 -    def getRietveldObjects(self, component): 
-
        1389          """ Get Pattern that holds the zero-shift parameter 
-1390   
-1391          Argument:    
-1392          - component :   RietveldComponent 
-1393   
-1394          Return      :   list, [rietveld-object (main), rietvel] 
-1395          """ 
-1396          rietobject = component.getPattern() 
-1397   
-1398          return ( [rietobject] ) 
-
        1399   
-1400   
-
        1401 -    def generateRefineSetup(self, rietveldobjects, stage = 1): 
-
        1402          """ Generate RefinementSetup for this specific RefineGuide 
-1403   
-1404          Argument: 
-1405          - rietveldobjects   :   list of list of Rietveld objects 
-1406          - stage             :   int 
-1407   
-1408          Return              :   RefineSetup 
-1409          """ 
-1410          refinesetup = UR.genWavelengthRefineSetup(self._guideFit, rietveldobjects, stage) 
-1411   
-1412          return refinesetup 
-
        1413   
-1414  # END-DEF-CLASS WavelengthGuide 
-1415   
-1416   
-
        1417 -class ZeroGuide(InstrumentGuide): 
-
        1418      """ Guidance to refine zero parameters 
-1419      """ 
-
        1420 -    def getRietveldObjects(self, component): 
-
        1421          """ Get Pattern that holds the zero-shift parameter 
-1422   
-1423          Argument:    
-1424          - component :   RietveldComponent 
-1425   
-1426          Return      :   list, [rietveld-object (main), rietvel] 
-1427          """ 
-1428          rietobject = component.getPattern() 
-1429   
-1430          return ( [rietobject] ) 
-
        1431   
-1432   
-
        1433 -    def generateRefineSetup(self, rietveldobjects, stage = 1): 
-
        1434          """ Generate RefinementSetup for this specific RefineGuide 
-1435   
-1436          Argument: 
-1437          - rietveldobjects   :   list of list of Rietveld objects 
-1438          - stage             :   int 
-1439   
-1440          Return              :   RefineSetup 
-1441          """ 
-1442          refinesetup = UR.genZeroRefineSetup(self._guideFit, rietveldobjects) 
-1443   
-1444          return refinesetup 
-
        1445   
-1446  # END -- class ZeroGuide(RefineGuide) 
-1447   
-
        -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refineguides.ADPGuide-class.html b/static_root/doc/srrietveld/developers/srrietveld.refineguides.ADPGuide-class.html deleted file mode 100644 index a26d3a80..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refineguides.ADPGuide-class.html +++ /dev/null @@ -1,514 +0,0 @@ - - - - - srrietveld.refineguides.ADPGuide - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refineguides :: - Class ADPGuide - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class ADPGuide

        source code

        -
        -RefineGuide --+    
-              |    
-      AtomGuide --+
-                  |
-                 ADPGuide
-
        - -
        -class to guide refinement on atomic displacement factor

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        getRietveldObjects(self, - atom)
        - Get atom object of given atom object...        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetup(self, - rietobjectlist, - stage=1)
        - Generate RefineSetup...        		 - source code - -
        - -
            Inherited from AtomGuide
        -   - - - - - - -
        getGuideConfig(self, - fit, - stage=1)
        - Examine a diffpy.rietveldapi.Fit instance in order to -1.        		 - source code - -
        - -
        -   - - - - - - -
        getRefineAllConfig(self, - fit, - stage=1)
        - Obtain the information to refine all the paramaters controlled by this Guide!...        		 - source code - -
        - -
            Inherited from RefineGuide
        -   - - - - - - -
        __init__(self)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - return the format reprensentation of this RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetupDictionary(self, - refinesetuplist, - stage=1, - refineseq=False)
        - Use temporary refinesetuplist to set up a dictionary -(instance variable) to hold the RefineSetup, Rietveld Object and naming indices -for each refinement procedure (step number starting from 1) - -Argument: -- refinesetuplist : list of 3-tuples: - RefineSetup, list of list of Rietveld objects, list of int (indices) -- stage : int -- refineseq : boolean.        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self)
        - Return the (maximum) number of refinement steps scheduled by this - refinement guide        		 - source code - -
        - -
        -   - - - - - - -
        getNumStages(self)
        - Report the number of stages of this RefineGuide to use        		 - source code - -
        - -
        -   - - - - - - -
        getRefinedVariablesList(self)
        - get the list of refined variables with necessary information, - i.e., self._variableslist        		 - source code - -
        - -
        -   - - - - - - -
        reset(self)
        - Reset the RefineGuide set up for a certain Fit instance        		 - source code - -
        - -
        -   - - - - - - -
        resetVisitRecord(self)
        - Reset the visiting record (gVisit)        		 - source code - -
        - -
        -   - - - - - - -
        setGuideStep(self, - fit, - step=1, - stage=1, - dry=False)
        - Turn on variables scheduled at a certain step in current refine - guidance        		 - source code - -
        - -
        -   - - - - - - -
        turnOff(self, - fit)
        - turn the parameters/variables off from refining,...        		 - source code - -
        - -
        - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
            Inherited from RefineGuide
        -   - - guideDescription = 'Virtual Base Class' -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        getRietveldObjects(self, - atom) -

        -         		source code  -
        - - 
        -Get atom object of given atom object
-
-Argument:
-- atom  :   Atom
-
-Return  :   ADP
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        generateRefineSetup(self, - rietobjectlist, - stage=1) -

        -         		source code  -
        - - 
        -Generate RefineSetup
-
-Argument:
-- fit           :   Fit object
-- rietobject    :   list, of list of Rietveld object
-- state         :   int, 
-
-Return          :   ADPRefineSetup
-
-
        -
        -
        Overrides: - RefineGuide.generateRefineSetup -
        -
        -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refineguides.AbsorptionCorrectionGuide-class.html b/static_root/doc/srrietveld/developers/srrietveld.refineguides.AbsorptionCorrectionGuide-class.html deleted file mode 100644 index 8611186a..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refineguides.AbsorptionCorrectionGuide-class.html +++ /dev/null @@ -1,520 +0,0 @@ - - - - - srrietveld.refineguides.AbsorptionCorrectionGuide - - - - - - - - - - - - - - - - - - - - - - -
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        - - Package srrietveld :: - Module refineguides :: - Class AbsorptionCorrectionGuide - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class AbsorptionCorrectionGuide

        source code

        -
        -RefineGuide --+
-              |
-             AbsorptionCorrectionGuide
-
        - -
        -Refine guide TOF absorption correction

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        getRietveldObjects(self, - component)
        - get the Rietveld object from RietveldComponent - -Argument: -- component : RietveldComponent - -Convention : In SrRietveld, the first item in the return list - is the major Rietveld object to set up refine - The others are there for help.        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetup(self, - rietveldobjects, - stage=1)
        - Generate RefinementSetup for this specific RefineGuide...        		 - source code - -
        - -
            Inherited from RefineGuide
        -   - - - - - - -
        __init__(self)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - return the format reprensentation of this RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetupDictionary(self, - refinesetuplist, - stage=1, - refineseq=False)
        - Use temporary refinesetuplist to set up a dictionary -(instance variable) to hold the RefineSetup, Rietveld Object and naming indices -for each refinement procedure (step number starting from 1) - -Argument: -- refinesetuplist : list of 3-tuples: - RefineSetup, list of list of Rietveld objects, list of int (indices) -- stage : int -- refineseq : boolean.        		 - source code - -
        - -
        -   - - - - - - -
        getGuideConfig(self, - fit, - stage=1)
        - Examine a diffpy.rietveldapi.Fit instance in order to -1.        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self)
        - Return the (maximum) number of refinement steps scheduled by this - refinement guide        		 - source code - -
        - -
        -   - - - - - - -
        getNumStages(self)
        - Report the number of stages of this RefineGuide to use        		 - source code - -
        - -
        -   - - - - - - -
        getRefineAllConfig(self, - fit, - stage=1)
        - Obtain the information to refine all the paramaters controlled by this Guide!...        		 - source code - -
        - -
        -   - - - - - - -
        getRefinedVariablesList(self)
        - get the list of refined variables with necessary information, - i.e., self._variableslist        		 - source code - -
        - -
        -   - - - - - - -
        reset(self)
        - Reset the RefineGuide set up for a certain Fit instance        		 - source code - -
        - -
        -   - - - - - - -
        resetVisitRecord(self)
        - Reset the visiting record (gVisit)        		 - source code - -
        - -
        -   - - - - - - -
        setGuideStep(self, - fit, - step=1, - stage=1, - dry=False)
        - Turn on variables scheduled at a certain step in current refine - guidance        		 - source code - -
        - -
        -   - - - - - - -
        turnOff(self, - fit)
        - turn the parameters/variables off from refining,...        		 - source code - -
        - -
        - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
            Inherited from RefineGuide
        -   - - guideDescription = 'Virtual Base Class' -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        getRietveldObjects(self, - component) -

        -         		source code  -
        - - 
        -get the Rietveld object from RietveldComponent
-
-Argument:   
-- component :   RietveldComponent
-
-Convention  :   In SrRietveld, the first item in the return list
-                is the major Rietveld object to set up refine
-                The others are there for help.
-                The sequence will be specified in each extended class
-
-Return      :   list, [rietveld-object (main), rietveld-object, ..]
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        generateRefineSetup(self, - rietveldobjects, - stage=1) -

        -         		source code  -
        - - 
        -Generate RefinementSetup for this specific RefineGuide
-
-Argument:
-- rietveldobjects   :   list, of list, of Rietveld objects
-- stage             :   int
-
-Return              :   RefineSetup
-
-
        -
        -
        Overrides: - RefineGuide.generateRefineSetup -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refineguides.AtomGuide-class.html b/static_root/doc/srrietveld/developers/srrietveld.refineguides.AtomGuide-class.html deleted file mode 100644 index d52a6794..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refineguides.AtomGuide-class.html +++ /dev/null @@ -1,526 +0,0 @@ - - - - - srrietveld.refineguides.AtomGuide - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refineguides :: - Class AtomGuide - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class AtomGuide

        source code

        -
        -RefineGuide --+
-              |
-             AtomGuide
-
        - -
        Known Subclasses:
        -
        - ADPGuide, - FractionalCoordinateGuide -
        - -
        -
        -StructureGuide is to guide the refinement
-on parameters related to structure model
-
-Assumption: 
-1. Rietveld parameters belonged to different phases are not correlated
-
-Algorithm applied:
--  refine one Rietveld object, such as one atom's position (x, y, z), or
-   one atom's Biso at each atom.
--  do not consider the efficiency to refine two atom's parameters 
-   simulataneously if they belonged to different phase;
-   This may increase some unnecessary steps, but it will keep the algorithm
-   and behavior of the codes more clear;
-   a) In multiple-phase situation, whether refining 2 or more phases together 
-      can cause some problem is unknown
-   b) In co-refinement on different material situation, since it is usually
-      applied to instrument calibration, the structure of material is
-      simple
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        getGuideConfig(self, - fit, - stage=1)
        - Examine a diffpy.rietveldapi.Fit instance in order to -1.        		 - source code - -
        - -
        -   - - - - - - -
        getRefineAllConfig(self, - fit, - stage=1)
        - Obtain the information to refine all the paramaters controlled by this Guide!...        		 - source code - -
        - -
            Inherited from RefineGuide
        -   - - - - - - -
        __init__(self)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - return the format reprensentation of this RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetup(self, - rietveldobjects, - stage=1)
        - Generate RefinementSetup for this specific RefineGuide...        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetupDictionary(self, - refinesetuplist, - stage=1, - refineseq=False)
        - Use temporary refinesetuplist to set up a dictionary -(instance variable) to hold the RefineSetup, Rietveld Object and naming indices -for each refinement procedure (step number starting from 1) - -Argument: -- refinesetuplist : list of 3-tuples: - RefineSetup, list of list of Rietveld objects, list of int (indices) -- stage : int -- refineseq : boolean.        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self)
        - Return the (maximum) number of refinement steps scheduled by this - refinement guide        		 - source code - -
        - -
        -   - - - - - - -
        getNumStages(self)
        - Report the number of stages of this RefineGuide to use        		 - source code - -
        - -
        -   - - - - - - -
        getRefinedVariablesList(self)
        - get the list of refined variables with necessary information, - i.e., self._variableslist        		 - source code - -
        - -
        -   - - - - - - -
        reset(self)
        - Reset the RefineGuide set up for a certain Fit instance        		 - source code - -
        - -
        -   - - - - - - -
        resetVisitRecord(self)
        - Reset the visiting record (gVisit)        		 - source code - -
        - -
        -   - - - - - - -
        setGuideStep(self, - fit, - step=1, - stage=1, - dry=False)
        - Turn on variables scheduled at a certain step in current refine - guidance        		 - source code - -
        - -
        -   - - - - - - -
        turnOff(self, - fit)
        - turn the parameters/variables off from refining,...        		 - source code - -
        - -
        - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
            Inherited from RefineGuide
        -   - - guideDescription = 'Virtual Base Class' -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        getGuideConfig(self, - fit, - stage=1) -

        -         		source code  -
        - - 
        -Examine a diffpy.rietveldapi.Fit instance in order to 
-1. set up a series of RefineSetup bound to corresponding 
-   diffpy.rietveldapi objects
-2. return how many steps to refine parameters 
-
-Virtual function
-
-Arguements:
-- fit   :   diffpy.rietveldapi.Fit instance
-- stage :   int, 
-
-Return  :   integer, number of steps for a sequence of refine    
-
-
        -
        -
        Overrides: - RefineGuide.getGuideConfig -
        -
        -
        -
        - -
        - -
        - - -
        -

        getRefineAllConfig(self, - fit, - stage=1) -

        -         		source code  -
        - - 
        -
-Obtain the information to refine all the paramaters controlled by this Guide!
-
-Arguments:
-- fit   :   diffpy.rietveldapi.Fit
-
-Return  :   3-tuple (constraint, rietobj, parname)
-
-
        -
        -
        Overrides: - RefineGuide.getRefineAllConfig -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refineguides.BackgroundGuide-class.html b/static_root/doc/srrietveld/developers/srrietveld.refineguides.BackgroundGuide-class.html deleted file mode 100644 index c1632cda..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refineguides.BackgroundGuide-class.html +++ /dev/null @@ -1,516 +0,0 @@ - - - - - srrietveld.refineguides.BackgroundGuide - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refineguides :: - Class BackgroundGuide - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class BackgroundGuide

        source code

        -
        - RefineGuide --+    
-               |    
-MeasurementGuide --+
-                   |
-                  BackgroundGuide
-
        - -
        -Guidance for backgrounds parameters

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        getRietveldObjects(self, - component)
        - get the Rietveld object from RietveldComponent...        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetup(self, - rietveldobjects, - stage=1)
        - Generate RefinementSetup for this specific RefineGuide...        		 - source code - -
        - -
            Inherited from MeasurementGuide
        -   - - - - - - -
        getGuideConfig(self, - fit, - stage=1)
        - Examine a diffpy.rietveldapi.Fit instance in order to -1.        		 - source code - -
        - -
        -   - - - - - - -
        getRefineAllConfig(self, - fit, - stage=1)
        - Obtain the information to refine all the paramaters ...        		 - source code - -
        - -
            Inherited from RefineGuide
        -   - - - - - - -
        __init__(self)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - return the format reprensentation of this RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetupDictionary(self, - refinesetuplist, - stage=1, - refineseq=False)
        - Use temporary refinesetuplist to set up a dictionary -(instance variable) to hold the RefineSetup, Rietveld Object and naming indices -for each refinement procedure (step number starting from 1) - -Argument: -- refinesetuplist : list of 3-tuples: - RefineSetup, list of list of Rietveld objects, list of int (indices) -- stage : int -- refineseq : boolean.        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self)
        - Return the (maximum) number of refinement steps scheduled by this - refinement guide        		 - source code - -
        - -
        -   - - - - - - -
        getNumStages(self)
        - Report the number of stages of this RefineGuide to use        		 - source code - -
        - -
        -   - - - - - - -
        getRefinedVariablesList(self)
        - get the list of refined variables with necessary information, - i.e., self._variableslist        		 - source code - -
        - -
        -   - - - - - - -
        reset(self)
        - Reset the RefineGuide set up for a certain Fit instance        		 - source code - -
        - -
        -   - - - - - - -
        resetVisitRecord(self)
        - Reset the visiting record (gVisit)        		 - source code - -
        - -
        -   - - - - - - -
        setGuideStep(self, - fit, - step=1, - stage=1, - dry=False)
        - Turn on variables scheduled at a certain step in current refine - guidance        		 - source code - -
        - -
        -   - - - - - - -
        turnOff(self, - fit)
        - turn the parameters/variables off from refining,...        		 - source code - -
        - -
        - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
            Inherited from RefineGuide
        -   - - guideDescription = 'Virtual Base Class' -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        getRietveldObjects(self, - component) -

        -         		source code  -
        - - 
        -get the Rietveld object from RietveldComponent
-
-Argument:   
-- component :   RietveldComponent
-
-Return      :   list, [Background object, Pattern object]
-
-
        -
        -
        Overrides: - MeasurementGuide.getRietveldObjects -
        -
        -
        -
        - -
        - -
        - - -
        -

        generateRefineSetup(self, - rietveldobjects, - stage=1) -

        -         		source code  -
        - - 
        -Generate RefinementSetup for this specific RefineGuide
-
-Argument:
-- rietveldobjects   :   list, of list, of Rietveld objects
-- stage             :   int
-
-Return              :   RefineSetup
-
-
        -
        -
        Overrides: - RefineGuide.generateRefineSetup -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refineguides.ExpDecayGuide-class.html b/static_root/doc/srrietveld/developers/srrietveld.refineguides.ExpDecayGuide-class.html deleted file mode 100644 index 75f1ffce..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refineguides.ExpDecayGuide-class.html +++ /dev/null @@ -1,543 +0,0 @@ - - - - - srrietveld.refineguides.ExpDecayGuide - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refineguides :: - Class ExpDecayGuide - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class ExpDecayGuide

        source code

        -
        -RefineGuide --+    
-              |    
-InstrumentGuide --+
-                  |
-                 ExpDecayGuide
-
        - -
        -
        -Refinement guidance on exponential decay parameters
-Algorithm:
-    the exponential decay/peak profile of different phases shouldn't interefere with each other, 
-    because they are determining the peaks' shape belonged to different sets,
-    therefore, 
-    1. exponential decay parameters belonged to different phases but of same Rietveld Component
-       must be same!
-    2. exponential decay parameters belonged to different patterns (different instruments)
-       can be refined simultaneously 
-    From assumption 1 and 2, the conclusion is that
-    EVERY Expoenetial Decay IS INDEPENDENT OF THE OTHERS Class to guide the refine of Peak-Shape
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        getRietveldObjects(self, - component)
        - Get Pattern that holds the zero-shift parameter...        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetup(self, - rietveldobjects, - stage=1)
        - Generate RefinementSetup for this specific RefineGuide...        		 - source code - -
        - -
            Inherited from InstrumentGuide
        -   - - - - - - -
        getComponents(self, - fit)
        - Get RietveldComponents from Fit instance...        		 - source code - -
        - -
        -   - - - - - - -
        getGuideConfig(self, - fit, - stage=1)
        - return how many steps to refine parameters ...        		 - source code - -
        - -
        -   - - - - - - -
        getRefineAllConfig(self, - fit, - stage=1)
        - Obtain the information to refine all the paramaters ...        		 - source code - -
        - -
            Inherited from RefineGuide
        -   - - - - - - -
        __init__(self)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - return the format reprensentation of this RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetupDictionary(self, - refinesetuplist, - stage=1, - refineseq=False)
        - Use temporary refinesetuplist to set up a dictionary -(instance variable) to hold the RefineSetup, Rietveld Object and naming indices -for each refinement procedure (step number starting from 1) - -Argument: -- refinesetuplist : list of 3-tuples: - RefineSetup, list of list of Rietveld objects, list of int (indices) -- stage : int -- refineseq : boolean.        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self)
        - Return the (maximum) number of refinement steps scheduled by this - refinement guide        		 - source code - -
        - -
        -   - - - - - - -
        getNumStages(self)
        - Report the number of stages of this RefineGuide to use        		 - source code - -
        - -
        -   - - - - - - -
        getRefinedVariablesList(self)
        - get the list of refined variables with necessary information, - i.e., self._variableslist        		 - source code - -
        - -
        -   - - - - - - -
        reset(self)
        - Reset the RefineGuide set up for a certain Fit instance        		 - source code - -
        - -
        -   - - - - - - -
        resetVisitRecord(self)
        - Reset the visiting record (gVisit)        		 - source code - -
        - -
        -   - - - - - - -
        setGuideStep(self, - fit, - step=1, - stage=1, - dry=False)
        - Turn on variables scheduled at a certain step in current refine - guidance        		 - source code - -
        - -
        -   - - - - - - -
        turnOff(self, - fit)
        - turn the parameters/variables off from refining,...        		 - source code - -
        - -
        - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
            Inherited from RefineGuide
        -   - - guideDescription = 'Virtual Base Class' -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        getRietveldObjects(self, - component) -

        -         		source code  -
        - - 
        -Get Pattern that holds the zero-shift parameter
-
-Argument:   
-- component :   RietveldComponent
-
-Return      :   list, [rietveld-object (main), rietvel]
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        generateRefineSetup(self, - rietveldobjects, - stage=1) -

        -         		source code  -
        - - 
        -Generate RefinementSetup for this specific RefineGuide
-
-Argument:
-- rietveldobjects   :   list of list of Rietveld objects
-- stage             :   int
-
-Return              :   RefineSetup
-
-
        -
        -
        Overrides: - RefineGuide.generateRefineSetup -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refineguides.FractionalCoordinateGuide-class.html b/static_root/doc/srrietveld/developers/srrietveld.refineguides.FractionalCoordinateGuide-class.html deleted file mode 100644 index 2e5287c8..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refineguides.FractionalCoordinateGuide-class.html +++ /dev/null @@ -1,513 +0,0 @@ - - - - - srrietveld.refineguides.FractionalCoordinateGuide - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refineguides :: - Class FractionalCoordinateGuide - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class FractionalCoordinateGuide

        source code

        -
        -RefineGuide --+    
-              |    
-      AtomGuide --+
-                  |
-                 FractionalCoordinateGuide
-
        - -
        -Class to guide refinement on atoms' fractional coordinates

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        getRietveldObjects(self, - atom)
        - Get atom object of given atom object...        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetup(self, - rietobjectslist, - stage)
        - Generate RefineSetup...        		 - source code - -
        - -
            Inherited from AtomGuide
        -   - - - - - - -
        getGuideConfig(self, - fit, - stage=1)
        - Examine a diffpy.rietveldapi.Fit instance in order to -1.        		 - source code - -
        - -
        -   - - - - - - -
        getRefineAllConfig(self, - fit, - stage=1)
        - Obtain the information to refine all the paramaters controlled by this Guide!...        		 - source code - -
        - -
            Inherited from RefineGuide
        -   - - - - - - -
        __init__(self)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - return the format reprensentation of this RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetupDictionary(self, - refinesetuplist, - stage=1, - refineseq=False)
        - Use temporary refinesetuplist to set up a dictionary -(instance variable) to hold the RefineSetup, Rietveld Object and naming indices -for each refinement procedure (step number starting from 1) - -Argument: -- refinesetuplist : list of 3-tuples: - RefineSetup, list of list of Rietveld objects, list of int (indices) -- stage : int -- refineseq : boolean.        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self)
        - Return the (maximum) number of refinement steps scheduled by this - refinement guide        		 - source code - -
        - -
        -   - - - - - - -
        getNumStages(self)
        - Report the number of stages of this RefineGuide to use        		 - source code - -
        - -
        -   - - - - - - -
        getRefinedVariablesList(self)
        - get the list of refined variables with necessary information, - i.e., self._variableslist        		 - source code - -
        - -
        -   - - - - - - -
        reset(self)
        - Reset the RefineGuide set up for a certain Fit instance        		 - source code - -
        - -
        -   - - - - - - -
        resetVisitRecord(self)
        - Reset the visiting record (gVisit)        		 - source code - -
        - -
        -   - - - - - - -
        setGuideStep(self, - fit, - step=1, - stage=1, - dry=False)
        - Turn on variables scheduled at a certain step in current refine - guidance        		 - source code - -
        - -
        -   - - - - - - -
        turnOff(self, - fit)
        - turn the parameters/variables off from refining,...        		 - source code - -
        - -
        - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
            Inherited from RefineGuide
        -   - - guideDescription = 'Virtual Base Class' -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        getRietveldObjects(self, - atom) -

        -         		source code  -
        - - 
        -Get atom object of given atom object
-
-Argument:
-- atom  :   Atom
-
-Return  :   Atom
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        generateRefineSetup(self, - rietobjectslist, - stage) -

        -         		source code  -
        - - 
        -Generate RefineSetup
-
-Argument:
-- rietobjectslist   :   list of list of Rietveld objects
-- stage :   int
-
-Return          :   AtomFractionCoordinateRefineSetup
-
-
        -
        -
        Overrides: - RefineGuide.generateRefineSetup -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refineguides.InstrumentGuide-class.html b/static_root/doc/srrietveld/developers/srrietveld.refineguides.InstrumentGuide-class.html deleted file mode 100644 index 1bd6ca80..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refineguides.InstrumentGuide-class.html +++ /dev/null @@ -1,560 +0,0 @@ - - - - - srrietveld.refineguides.InstrumentGuide - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refineguides :: - Class InstrumentGuide - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class InstrumentGuide

        source code

        -
        -RefineGuide --+
-              |
-             InstrumentGuide
-
        - -
        Known Subclasses:
        -
        - ExpDecayGuide, - PeakShapeGuide, - ScaleGuide, - WavelengthGuide, - ZeroGuide -
        - -
        -
        -Guidance for instrument related parammeters
-
-Assumption:
-1. the parameters belonged to different instrument setup 
-   must be independent, i.e., they can be refined 
-   simultaneously
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        getComponents(self, - fit)
        - Get RietveldComponents from Fit instance...        		 - source code - -
        - -
        -   - - - - - - -
        getGuideConfig(self, - fit, - stage=1)
        - return how many steps to refine parameters ...        		 - source code - -
        - -
        -   - - - - - - -
        getRefineAllConfig(self, - fit, - stage=1)
        - Obtain the information to refine all the paramaters ...        		 - source code - -
        - -
            Inherited from RefineGuide
        -   - - - - - - -
        __init__(self)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - return the format reprensentation of this RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetup(self, - rietveldobjects, - stage=1)
        - Generate RefinementSetup for this specific RefineGuide...        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetupDictionary(self, - refinesetuplist, - stage=1, - refineseq=False)
        - Use temporary refinesetuplist to set up a dictionary -(instance variable) to hold the RefineSetup, Rietveld Object and naming indices -for each refinement procedure (step number starting from 1) - -Argument: -- refinesetuplist : list of 3-tuples: - RefineSetup, list of list of Rietveld objects, list of int (indices) -- stage : int -- refineseq : boolean.        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self)
        - Return the (maximum) number of refinement steps scheduled by this - refinement guide        		 - source code - -
        - -
        -   - - - - - - -
        getNumStages(self)
        - Report the number of stages of this RefineGuide to use        		 - source code - -
        - -
        -   - - - - - - -
        getRefinedVariablesList(self)
        - get the list of refined variables with necessary information, - i.e., self._variableslist        		 - source code - -
        - -
        -   - - - - - - -
        reset(self)
        - Reset the RefineGuide set up for a certain Fit instance        		 - source code - -
        - -
        -   - - - - - - -
        resetVisitRecord(self)
        - Reset the visiting record (gVisit)        		 - source code - -
        - -
        -   - - - - - - -
        setGuideStep(self, - fit, - step=1, - stage=1, - dry=False)
        - Turn on variables scheduled at a certain step in current refine - guidance        		 - source code - -
        - -
        -   - - - - - - -
        turnOff(self, - fit)
        - turn the parameters/variables off from refining,...        		 - source code - -
        - -
        - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
            Inherited from RefineGuide
        -   - - guideDescription = 'Virtual Base Class' -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        getComponents(self, - fit) -

        -         		source code  -
        - - 
        -Get RietveldComponents from Fit instance
-This function is intended to be overriden in special case
-
-Arguement:
-- fit   :   Fit instance
-
-Return  :   list of list RietveldComponent
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getGuideConfig(self, - fit, - stage=1) -

        -         		source code  -
        - - 
        -
-return how many steps to refine parameters 
-
-Arguements:
-- fit       :   diffpy.rietveldapi Fit instance
-
-Return      -   integer, number of steps for a sequence of refine
-
-
        -
        -
        Overrides: - RefineGuide.getGuideConfig -
        -
        -
        -
        - -
        - -
        - - -
        -

        getRefineAllConfig(self, - fit, - stage=1) -

        -         		source code  -
        - - 
        -
-Obtain the information to refine all the paramaters 
-controlled by this Guide
-
-Arguments:
-- fit   :   diffpy.rietveldapi.Fit
-- stage :   int
-
-Return  :   3-tuple (constraint, rietobj, parname)
-
-
        -
        -
        Overrides: - RefineGuide.getRefineAllConfig -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refineguides.LatticeGuide-class.html b/static_root/doc/srrietveld/developers/srrietveld.refineguides.LatticeGuide-class.html deleted file mode 100644 index 9200cced..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refineguides.LatticeGuide-class.html +++ /dev/null @@ -1,518 +0,0 @@ - - - - - srrietveld.refineguides.LatticeGuide - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refineguides :: - Class LatticeGuide - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class LatticeGuide

        source code

        -
        -RefineGuide --+
-              |
-             LatticeGuide
-
        - -
        -
        -Refinement guidance on lattice parameter
-We allow the freedom for each Phase of each Component to
-have different lattice parameter. 
-For example
-1. MnAs is measured by both NPDF and RAPDF.  A corefinement
-   is preferred.  Because the temperatures at the experiment
-   can be different, the lattice parameters then are different
-   between two measurement
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        getGuideConfig(self, - fit, - stage=1)
        - Examine a diffpy.rietveldapi.Fit instance in order to -1.        		 - source code - -
        - -
        -   - - - - - - -
        getRefineAllConfig(self, - fit, - stage=1)
        - Obtain the information to refine all the paramaters ...        		 - source code - -
        - -
            Inherited from RefineGuide
        -   - - - - - - -
        __init__(self)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - return the format reprensentation of this RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetup(self, - rietveldobjects, - stage=1)
        - Generate RefinementSetup for this specific RefineGuide...        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetupDictionary(self, - refinesetuplist, - stage=1, - refineseq=False)
        - Use temporary refinesetuplist to set up a dictionary -(instance variable) to hold the RefineSetup, Rietveld Object and naming indices -for each refinement procedure (step number starting from 1) - -Argument: -- refinesetuplist : list of 3-tuples: - RefineSetup, list of list of Rietveld objects, list of int (indices) -- stage : int -- refineseq : boolean.        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self)
        - Return the (maximum) number of refinement steps scheduled by this - refinement guide        		 - source code - -
        - -
        -   - - - - - - -
        getNumStages(self)
        - Report the number of stages of this RefineGuide to use        		 - source code - -
        - -
        -   - - - - - - -
        getRefinedVariablesList(self)
        - get the list of refined variables with necessary information, - i.e., self._variableslist        		 - source code - -
        - -
        -   - - - - - - -
        reset(self)
        - Reset the RefineGuide set up for a certain Fit instance        		 - source code - -
        - -
        -   - - - - - - -
        resetVisitRecord(self)
        - Reset the visiting record (gVisit)        		 - source code - -
        - -
        -   - - - - - - -
        setGuideStep(self, - fit, - step=1, - stage=1, - dry=False)
        - Turn on variables scheduled at a certain step in current refine - guidance        		 - source code - -
        - -
        -   - - - - - - -
        turnOff(self, - fit)
        - turn the parameters/variables off from refining,...        		 - source code - -
        - -
        - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
            Inherited from RefineGuide
        -   - - guideDescription = 'Virtual Base Class' -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        getGuideConfig(self, - fit, - stage=1) -

        -         		source code  -
        - - 
        -Examine a diffpy.rietveldapi.Fit instance in order to 
-1. set up a series of RefineSetup bound to corresponding 
-   diffpy.rietveldapi objects
-2. return how many steps to refine parameters 
-
-1. Necessary parameters includes
-a, b, c
-alpha, beta, gamma if they are not 90
-
-2. Constraint will be set according to the space group
-
-3. extra: need to consider the case multiple patterns share phases!      Arguements:
-- fit   :   diffpy.rietveldapi.Fit instance
-
-Arguements:
-- fit   :   diffpy.rietveldapi.Fit instance
-- stage :   int, 
-
-Return  :   integer, number of steps for a sequence of refine    
-
-
        -
        -
        Overrides: - RefineGuide.getGuideConfig -
        -
        -
        -
        - -
        - -
        - - -
        -

        getRefineAllConfig(self, - fit, - stage=1) -

        -         		source code  -
        - - 
        -Obtain the information to refine all the paramaters 
-controlled by this Guide
-
-Arguments:
-- fit   :   diffpy.rietveldapi.Fit
-- stage :   int
-
-Return  :   3-tuple (constraint, rietobj, parname)
-
-
        -
        -
        Overrides: - RefineGuide.getRefineAllConfig -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refineguides.MeasurementGuide-class.html b/static_root/doc/srrietveld/developers/srrietveld.refineguides.MeasurementGuide-class.html deleted file mode 100644 index 8e2d9226..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refineguides.MeasurementGuide-class.html +++ /dev/null @@ -1,574 +0,0 @@ - - - - - srrietveld.refineguides.MeasurementGuide - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refineguides :: - Class MeasurementGuide - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class MeasurementGuide

        source code

        -
        -RefineGuide --+
-              |
-             MeasurementGuide
-
        - -
        Known Subclasses:
        -
        - BackgroundGuide -
        - -
        -
        -MeasurementGuide is the guidance for parameters related to 
-specific measurement, for example
-1. same instrument, same sample, same time, but different banks
-2. same instrument, different sample, 
-3. different instrument, same sample, different time,
-
-Assumption:  Each pattern/RietveldComponent is an individual measurement
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        getGuideConfig(self, - fit, - stage=1)
        - Examine a diffpy.rietveldapi.Fit instance in order to -1.        		 - source code - -
        - -
        -   - - - - - - -
        getRefineAllConfig(self, - fit, - stage=1)
        - Obtain the information to refine all the paramaters ...        		 - source code - -
        - -
        -   - - - - - - -
        getRietveldObjects(self, - component)
        - get the Rietveld object from RietveldComponent - -Argument: -- component : RietveldComponent - -Convention : In SrRietveld, the first item in the return list - is the major Rietveld object to set up refine - The others are there for help.        		 - source code - -
        - -
            Inherited from RefineGuide
        -   - - - - - - -
        __init__(self)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - return the format reprensentation of this RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetup(self, - rietveldobjects, - stage=1)
        - Generate RefinementSetup for this specific RefineGuide...        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetupDictionary(self, - refinesetuplist, - stage=1, - refineseq=False)
        - Use temporary refinesetuplist to set up a dictionary -(instance variable) to hold the RefineSetup, Rietveld Object and naming indices -for each refinement procedure (step number starting from 1) - -Argument: -- refinesetuplist : list of 3-tuples: - RefineSetup, list of list of Rietveld objects, list of int (indices) -- stage : int -- refineseq : boolean.        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self)
        - Return the (maximum) number of refinement steps scheduled by this - refinement guide        		 - source code - -
        - -
        -   - - - - - - -
        getNumStages(self)
        - Report the number of stages of this RefineGuide to use        		 - source code - -
        - -
        -   - - - - - - -
        getRefinedVariablesList(self)
        - get the list of refined variables with necessary information, - i.e., self._variableslist        		 - source code - -
        - -
        -   - - - - - - -
        reset(self)
        - Reset the RefineGuide set up for a certain Fit instance        		 - source code - -
        - -
        -   - - - - - - -
        resetVisitRecord(self)
        - Reset the visiting record (gVisit)        		 - source code - -
        - -
        -   - - - - - - -
        setGuideStep(self, - fit, - step=1, - stage=1, - dry=False)
        - Turn on variables scheduled at a certain step in current refine - guidance        		 - source code - -
        - -
        -   - - - - - - -
        turnOff(self, - fit)
        - turn the parameters/variables off from refining,...        		 - source code - -
        - -
        - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
            Inherited from RefineGuide
        -   - - guideDescription = 'Virtual Base Class' -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        getGuideConfig(self, - fit, - stage=1) -

        -         		source code  -
        - - 
        -Examine a diffpy.rietveldapi.Fit instance in order to 
-1. set up a series of RefineSetup bound to corresponding 
-   diffpy.rietveldapi objects
-2. return how many steps to refine parameters 
-
-Virtual function
-
-Arguements:
-- fit   :   diffpy.rietveldapi.Fit instance
-- stage :   int, 
-
-Return  :   integer, number of steps for a sequence of refine    
-
-
        -
        -
        Overrides: - RefineGuide.getGuideConfig -
        -
        -
        -
        - -
        - -
        - - -
        -

        getRefineAllConfig(self, - fit, - stage=1) -

        -         		source code  -
        - - 
        -
-Obtain the information to refine all the paramaters 
-controlled by this Guide
-
-Arguments:
-- fit   :   diffpy.rietveldapi.Fit
-- stage :   int
-
-Return  :   3-tuple (constraint, rietobj, parname)
-
-
        -
        -
        Overrides: - RefineGuide.getRefineAllConfig -
        -
        -
        -
        - -
        - -
        - - -
        -

        getRietveldObjects(self, - component) -

        -         		source code  -
        - - 
        -get the Rietveld object from RietveldComponent
-
-Argument:   
-- component :   RietveldComponent
-
-Convention  :   In SrRietveld, the first item in the return list
-                is the major Rietveld object to set up refine
-                The others are there for help.
-                The sequence will be specified in each extended class
-
-Return      :   list, [rietveld-object (main), rietveld-object, ..]
-
-
        -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refineguides.OccupancyGuide-class.html b/static_root/doc/srrietveld/developers/srrietveld.refineguides.OccupancyGuide-class.html deleted file mode 100644 index ff612de8..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refineguides.OccupancyGuide-class.html +++ /dev/null @@ -1,507 +0,0 @@ - - - - - srrietveld.refineguides.OccupancyGuide - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refineguides :: - Class OccupancyGuide - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class OccupancyGuide

        source code

        -
        -RefineGuide --+
-              |
-             OccupancyGuide
-
        - -
        -Refine guide on atom's occupancy

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        getRietveldObjects(self, - atom)
        - Get atom object of given atom object...        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetup(self, - rietobject, - stage)
        - Generate RefineSetup...        		 - source code - -
        - -
            Inherited from RefineGuide
        -   - - - - - - -
        __init__(self)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - return the format reprensentation of this RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetupDictionary(self, - refinesetuplist, - stage=1, - refineseq=False)
        - Use temporary refinesetuplist to set up a dictionary -(instance variable) to hold the RefineSetup, Rietveld Object and naming indices -for each refinement procedure (step number starting from 1) - -Argument: -- refinesetuplist : list of 3-tuples: - RefineSetup, list of list of Rietveld objects, list of int (indices) -- stage : int -- refineseq : boolean.        		 - source code - -
        - -
        -   - - - - - - -
        getGuideConfig(self, - fit, - stage=1)
        - Examine a diffpy.rietveldapi.Fit instance in order to -1.        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self)
        - Return the (maximum) number of refinement steps scheduled by this - refinement guide        		 - source code - -
        - -
        -   - - - - - - -
        getNumStages(self)
        - Report the number of stages of this RefineGuide to use        		 - source code - -
        - -
        -   - - - - - - -
        getRefineAllConfig(self, - fit, - stage=1)
        - Obtain the information to refine all the paramaters controlled by this Guide!...        		 - source code - -
        - -
        -   - - - - - - -
        getRefinedVariablesList(self)
        - get the list of refined variables with necessary information, - i.e., self._variableslist        		 - source code - -
        - -
        -   - - - - - - -
        reset(self)
        - Reset the RefineGuide set up for a certain Fit instance        		 - source code - -
        - -
        -   - - - - - - -
        resetVisitRecord(self)
        - Reset the visiting record (gVisit)        		 - source code - -
        - -
        -   - - - - - - -
        setGuideStep(self, - fit, - step=1, - stage=1, - dry=False)
        - Turn on variables scheduled at a certain step in current refine - guidance        		 - source code - -
        - -
        -   - - - - - - -
        turnOff(self, - fit)
        - turn the parameters/variables off from refining,...        		 - source code - -
        - -
        - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
            Inherited from RefineGuide
        -   - - guideDescription = 'Virtual Base Class' -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        getRietveldObjects(self, - atom) -

        -         		source code  -
        - - 
        -Get atom object of given atom object
-
-Argument:
-- atom  :   Atom
-
-Return  :   Atom
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        generateRefineSetup(self, - rietobject, - stage) -

        -         		source code  -
        - - 
        -Generate RefineSetup
-
-Argument:
-- rietobject    :   Rietveld object
-
-Return          :   ADPRefineSetup
-
-
        -
        -
        Overrides: - RefineGuide.generateRefineSetup -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refineguides.PeakShapeGuide-class.html b/static_root/doc/srrietveld/developers/srrietveld.refineguides.PeakShapeGuide-class.html deleted file mode 100644 index 3666a757..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refineguides.PeakShapeGuide-class.html +++ /dev/null @@ -1,531 +0,0 @@ - - - - - srrietveld.refineguides.PeakShapeGuide - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refineguides :: - Class PeakShapeGuide - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class PeakShapeGuide

        source code

        -
        -RefineGuide --+    
-              |    
-InstrumentGuide --+
-                  |
-                 PeakShapeGuide
-
        - -
        -Class to guide the refine of Peak-Shape

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        getRietveldObjects(self, - component)
        - Get Pattern that holds the zero-shift parameter...        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetup(self, - rietveldobjectslist, - stage=1)
        - Generate RefinementSetup for this specific RefineGuide...        		 - source code - -
        - -
            Inherited from InstrumentGuide
        -   - - - - - - -
        getComponents(self, - fit)
        - Get RietveldComponents from Fit instance...        		 - source code - -
        - -
        -   - - - - - - -
        getGuideConfig(self, - fit, - stage=1)
        - return how many steps to refine parameters ...        		 - source code - -
        - -
        -   - - - - - - -
        getRefineAllConfig(self, - fit, - stage=1)
        - Obtain the information to refine all the paramaters ...        		 - source code - -
        - -
            Inherited from RefineGuide
        -   - - - - - - -
        __init__(self)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - return the format reprensentation of this RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetupDictionary(self, - refinesetuplist, - stage=1, - refineseq=False)
        - Use temporary refinesetuplist to set up a dictionary -(instance variable) to hold the RefineSetup, Rietveld Object and naming indices -for each refinement procedure (step number starting from 1) - -Argument: -- refinesetuplist : list of 3-tuples: - RefineSetup, list of list of Rietveld objects, list of int (indices) -- stage : int -- refineseq : boolean.        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self)
        - Return the (maximum) number of refinement steps scheduled by this - refinement guide        		 - source code - -
        - -
        -   - - - - - - -
        getNumStages(self)
        - Report the number of stages of this RefineGuide to use        		 - source code - -
        - -
        -   - - - - - - -
        getRefinedVariablesList(self)
        - get the list of refined variables with necessary information, - i.e., self._variableslist        		 - source code - -
        - -
        -   - - - - - - -
        reset(self)
        - Reset the RefineGuide set up for a certain Fit instance        		 - source code - -
        - -
        -   - - - - - - -
        resetVisitRecord(self)
        - Reset the visiting record (gVisit)        		 - source code - -
        - -
        -   - - - - - - -
        setGuideStep(self, - fit, - step=1, - stage=1, - dry=False)
        - Turn on variables scheduled at a certain step in current refine - guidance        		 - source code - -
        - -
        -   - - - - - - -
        turnOff(self, - fit)
        - turn the parameters/variables off from refining,...        		 - source code - -
        - -
        - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
            Inherited from RefineGuide
        -   - - guideDescription = 'Virtual Base Class' -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        getRietveldObjects(self, - component) -

        -         		source code  -
        - - 
        -Get Pattern that holds the zero-shift parameter
-
-Argument:   
-- component :   RietveldComponent
-
-Return      :   list, [rietveld-object (main), rietvel]
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        generateRefineSetup(self, - rietveldobjectslist, - stage=1) -

        -         		source code  -
        - - 
        -Generate RefinementSetup for this specific RefineGuide
-
-Argument:
-- rietveldobjectslist   :   list of list of Rietveld objects
-                            [ [..], [...], ...]
-- stage                 :   int
-
-Return              :   RefineSetup
-
-
        -
        -
        Overrides: - RefineGuide.generateRefineSetup -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refineguides.RefineGuide-class.html b/static_root/doc/srrietveld/developers/srrietveld.refineguides.RefineGuide-class.html deleted file mode 100644 index 3c6e7b09..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refineguides.RefineGuide-class.html +++ /dev/null @@ -1,756 +0,0 @@ - - - - - srrietveld.refineguides.RefineGuide - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refineguides :: - Class RefineGuide - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class RefineGuide

        source code

        -
        Known Subclasses:
        -
        - AtomGuide, - AbsorptionCorrectionGuide, - MeasurementGuide, - InstrumentGuide, - LatticeGuide, - OccupancyGuide, - SampleGuide -
        - -
        -
        -Virtual base class to guide refinement semi-automatically
-
-Concept:
-  The way to use RefineGuide follows the procedure as
-  1. use getGuideConfig(guideFit) to examine and set up 
-     the refinement strategy
-  2. use setGuideStep(guideFit, step) to turn on some 
-     variables at a certain step
-  3. call Fit.refine() to refine
-
-Future:
-  It may be expanded such that some steps can be permuted
-
-Class Variables:
-- _lock             :   lock the logic usage of getGuideConfig() 
-                        and setGuideStep
-- _guideFit         :   the Fit instance to guide
-- _variableslist    :   list of tuples (rietobj, parameter-name) 
-                        that have been added to refined;
-
-                     *  variables will be set to refine by this list
-
-- _refinesetupdict  :   dictionary, 
-                        key:    integer, step from 1 to infinit, 
-                                *** Note ***
-                                'step' defined here is the step refinement based on
-                                RefineSetup. 
-                                Each 'step' can contain a few of RefineSetup on different
-                                Rietveld objects;
-                                Each 'step' can contain more than one 'atomic' refinement step,
-                                which is defined in RefineSetup
-                        value:  list of tuples, 
-                                (UnitRefineSetup, RietObj, IndicesTuple),
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - return the format reprensentation of this RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        resetVisitRecord(self)
        - Reset the visiting record (gVisit)        		 - source code - -
        - -
        -   - - - - - - -
        reset(self)
        - Reset the RefineGuide set up for a certain Fit instance        		 - source code - -
        - -
        -   - - - - - - -
        getGuideConfig(self, - fit, - stage=1)
        - Examine a diffpy.rietveldapi.Fit instance in order to -1.        		 - source code - -
        - -
        -   - - - - - - -
        getRefineAllConfig(self, - fit, - stage=1)
        - Obtain the information to refine all the paramaters controlled by this Guide!...        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self)
        - Return the (maximum) number of refinement steps scheduled by this - refinement guide        		 - source code - -
        - -
        -   - - - - - - -
        getNumStages(self)
        - Report the number of stages of this RefineGuide to use        		 - source code - -
        - -
        -   - - - - - - -
        setGuideStep(self, - fit, - step=1, - stage=1, - dry=False)
        - Turn on variables scheduled at a certain step in current refine - guidance        		 - source code - -
        - -
        -   - - - - - - -
        getRefinedVariablesList(self)
        - get the list of refined variables with necessary information, - i.e., self._variableslist        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetupDictionary(self, - refinesetuplist, - stage=1, - refineseq=False)
        - Use temporary refinesetuplist to set up a dictionary -(instance variable) to hold the RefineSetup, Rietveld Object and naming indices -for each refinement procedure (step number starting from 1) - -Argument: -- refinesetuplist : list of 3-tuples: - RefineSetup, list of list of Rietveld objects, list of int (indices) -- stage : int -- refineseq : boolean.        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetup(self, - rietveldobjects, - stage=1)
        - Generate RefinementSetup for this specific RefineGuide...        		 - source code - -
        - -
        -   - - - - - - -
        turnOff(self, - fit)
        - turn the parameters/variables off from refining,...        		 - source code - -
        - -
        - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - guideDescription = 'Virtual Base Class' -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        resetVisitRecord(self) -

        -         		source code  -
        - -

        Reset the visiting record (gVisit)

        - Return : None -
        -
        -
        -
        - -
        - -
        - - -
        -

        reset(self) -

        -         		source code  -
        - -

        Reset the RefineGuide set up for a certain Fit instance

        -

        Argument: (None)

        - Return : None -
        -
        -
        -
        - -
        - -
        - - -
        -

        getGuideConfig(self, - fit, - stage=1) -

        -         		source code  -
        - - 
        -
-Examine a diffpy.rietveldapi.Fit instance in order to 
-1. set up a series of RefineSetup bound to corresponding 
-   diffpy.rietveldapi objects
-2. return how many steps to refine parameters 
-
-Virtual function
-
-Arguements:
-- fit   :   diffpy.rietveldapi.Fit instance
-
-Return  :   integer, number of steps for a sequence of refine
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getRefineAllConfig(self, - fit, - stage=1) -

        -         		source code  -
        - - 
        -Obtain the information to refine all the paramaters controlled by this Guide!
-
-Arguments:
-- fit   :   diffpy.rietveldapi.Fit
-
-Return  :   3-tuple (constraint, rietobj, parname)
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getNumRefineSteps(self) -

        -         		source code  -
        - -

        Return the (maximum) number of refinement steps scheduled by this - refinement guide

        - Return : int, number of steps -
        -
        -
        -
        - -
        - -
        - - -
        -

        getNumStages(self) -

        -         		source code  -
        - -

        Report the number of stages of this RefineGuide to use

        - Return : integer, number of stages -
        -
        -
        -
        - -
        - -
        - - -
        -

        setGuideStep(self, - fit, - step=1, - stage=1, - dry=False) -

        -         		source code  -
        - -

        Turn on variables scheduled at a certain step in current refine - guidance

        -

        Arguements: fit : diffpy.rietveldapi.Fit instance step - : int, step of refining some parameters in order stage : int, - stage of refining these parameters dry : boolean, dry run means - no mapVP, just return the values

        - Return : list of tuples (constraint, rietveld-object, - parname) -
        -
        -
        -
        - -
        - -
        - - -
        -

        getRefinedVariablesList(self) -

        -         		source code  -
        - -

        get the list of refined variables with necessary information, i.e., - self._variableslist

        - Return : list of 3-tuples -
        -
        -
        -
        - -
        - -
        - - -
        -

        generateRefineSetupDictionary(self, - refinesetuplist, - stage=1, - refineseq=False) -

        -         		source code  -
        - - 
        -Use temporary refinesetuplist to set up a dictionary
-(instance variable) to hold the RefineSetup, Rietveld Object and naming indices
-for each refinement procedure (step number starting from 1)
-
-Argument:
-- refinesetuplist   :   list of 3-tuples: 
-                        RefineSetup, list of list of Rietveld objects, list of int (indices)
-- stage             :   int 
-- refineseq         :   boolean.    True:  Refine all refinesetup in sequence
-                                    False: Refine all refinesetup in parallel
-
-Return              :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        generateRefineSetup(self, - rietveldobjects, - stage=1) -

        -         		source code  -
        - - 
        -Generate RefinementSetup for this specific RefineGuide
-
-Argument:
-- rietveldobjects   :   list, of list of Rietveld objects
-                        [ [main-rietveld-obj, help-1, ...], [main-rietveld-obj, ..], ...]
-- stage             :   int
-
-Return              :   RefineSetup
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        turnOff(self, - fit) -

        -         		source code  -
        - - 
        -turn the parameters/variables off from refining,
-all the parameters/variables are turned on by this RefineGuide
-
-Arguement:
-- fit   :   diffpy.rietveldapi.Fit instance
-
-Return  :   None
-
-
        -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
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        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refineguides.SampleGuide-class.html b/static_root/doc/srrietveld/developers/srrietveld.refineguides.SampleGuide-class.html deleted file mode 100644 index 4551e786..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refineguides.SampleGuide-class.html +++ /dev/null @@ -1,508 +0,0 @@ - - - - - srrietveld.refineguides.SampleGuide - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refineguides :: - Class SampleGuide - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class SampleGuide

        source code

        -
        -RefineGuide --+
-              |
-             SampleGuide
-
        - -
        -
        -SampleGuide is the guidance for parameters related to 
-specific sample, including
-1. sample property correction
-2. lattice size
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        getGuideConfig(self, - fit, - stage=1)
        - Examine a diffpy.rietveldapi.Fit instance in order to -1.        		 - source code - -
        - -
        -   - - - - - - -
        getRefineAllConfig(self, - fit, - stage=1)
        - Obtain the information to refine all the paramaters ...        		 - source code - -
        - -
            Inherited from RefineGuide
        -   - - - - - - -
        __init__(self)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - return the format reprensentation of this RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetup(self, - rietveldobjects, - stage=1)
        - Generate RefinementSetup for this specific RefineGuide...        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetupDictionary(self, - refinesetuplist, - stage=1, - refineseq=False)
        - Use temporary refinesetuplist to set up a dictionary -(instance variable) to hold the RefineSetup, Rietveld Object and naming indices -for each refinement procedure (step number starting from 1) - -Argument: -- refinesetuplist : list of 3-tuples: - RefineSetup, list of list of Rietveld objects, list of int (indices) -- stage : int -- refineseq : boolean.        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self)
        - Return the (maximum) number of refinement steps scheduled by this - refinement guide        		 - source code - -
        - -
        -   - - - - - - -
        getNumStages(self)
        - Report the number of stages of this RefineGuide to use        		 - source code - -
        - -
        -   - - - - - - -
        getRefinedVariablesList(self)
        - get the list of refined variables with necessary information, - i.e., self._variableslist        		 - source code - -
        - -
        -   - - - - - - -
        reset(self)
        - Reset the RefineGuide set up for a certain Fit instance        		 - source code - -
        - -
        -   - - - - - - -
        resetVisitRecord(self)
        - Reset the visiting record (gVisit)        		 - source code - -
        - -
        -   - - - - - - -
        setGuideStep(self, - fit, - step=1, - stage=1, - dry=False)
        - Turn on variables scheduled at a certain step in current refine - guidance        		 - source code - -
        - -
        -   - - - - - - -
        turnOff(self, - fit)
        - turn the parameters/variables off from refining,...        		 - source code - -
        - -
        - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
            Inherited from RefineGuide
        -   - - guideDescription = 'Virtual Base Class' -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        getGuideConfig(self, - fit, - stage=1) -

        -         		source code  -
        - - 
        -Examine a diffpy.rietveldapi.Fit instance in order to 
-1. set up a series of RefineSetup bound to corresponding 
-   diffpy.rietveldapi objects
-2. return how many steps to refine parameters 
-
-Virtual function
-
-Arguements:
-- fit   :   diffpy.rietveldapi.Fit instance
-- stage :   int, 
-
-Return  :   integer, number of steps for a sequence of refine    
-
-
        -
        -
        Overrides: - RefineGuide.getGuideConfig -
        -
        -
        -
        - -
        - -
        - - -
        -

        getRefineAllConfig(self, - fit, - stage=1) -

        -         		source code  -
        - - 
        -
-Obtain the information to refine all the paramaters 
-controlled by this Guide
-
-Arguments:
-- fit   :   diffpy.rietveldapi.Fit
-- stage :   int
-
-Return  :   3-tuple (constraint, rietobj, parname)
-
-
        -
        -
        Overrides: - RefineGuide.getRefineAllConfig -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refineguides.ScaleGuide-class.html b/static_root/doc/srrietveld/developers/srrietveld.refineguides.ScaleGuide-class.html deleted file mode 100644 index 0713b27c..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refineguides.ScaleGuide-class.html +++ /dev/null @@ -1,562 +0,0 @@ - - - - - srrietveld.refineguides.ScaleGuide - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refineguides :: - Class ScaleGuide - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class ScaleGuide

        source code

        -
        -RefineGuide --+    
-              |    
-InstrumentGuide --+
-                  |
-                 ScaleGuide
-
        - -
        -Refinement guidance on scale factor

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        getComponents(self, - fit)
        - Get RietveldComponents from Fit instance...        		 - source code - -
        - -
        -   - - - - - - -
        getRietveldObjects(self, - component)
        - Get Pattern that holds the zero-shift parameter...        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetup(self, - rietveldobjects, - stage=1)
        - Generate RefinementSetup for this specific RefineGuide...        		 - source code - -
        - -
            Inherited from InstrumentGuide
        -   - - - - - - -
        getGuideConfig(self, - fit, - stage=1)
        - return how many steps to refine parameters ...        		 - source code - -
        - -
        -   - - - - - - -
        getRefineAllConfig(self, - fit, - stage=1)
        - Obtain the information to refine all the paramaters ...        		 - source code - -
        - -
            Inherited from RefineGuide
        -   - - - - - - -
        __init__(self)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - return the format reprensentation of this RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetupDictionary(self, - refinesetuplist, - stage=1, - refineseq=False)
        - Use temporary refinesetuplist to set up a dictionary -(instance variable) to hold the RefineSetup, Rietveld Object and naming indices -for each refinement procedure (step number starting from 1) - -Argument: -- refinesetuplist : list of 3-tuples: - RefineSetup, list of list of Rietveld objects, list of int (indices) -- stage : int -- refineseq : boolean.        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self)
        - Return the (maximum) number of refinement steps scheduled by this - refinement guide        		 - source code - -
        - -
        -   - - - - - - -
        getNumStages(self)
        - Report the number of stages of this RefineGuide to use        		 - source code - -
        - -
        -   - - - - - - -
        getRefinedVariablesList(self)
        - get the list of refined variables with necessary information, - i.e., self._variableslist        		 - source code - -
        - -
        -   - - - - - - -
        reset(self)
        - Reset the RefineGuide set up for a certain Fit instance        		 - source code - -
        - -
        -   - - - - - - -
        resetVisitRecord(self)
        - Reset the visiting record (gVisit)        		 - source code - -
        - -
        -   - - - - - - -
        setGuideStep(self, - fit, - step=1, - stage=1, - dry=False)
        - Turn on variables scheduled at a certain step in current refine - guidance        		 - source code - -
        - -
        -   - - - - - - -
        turnOff(self, - fit)
        - turn the parameters/variables off from refining,...        		 - source code - -
        - -
        - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
            Inherited from RefineGuide
        -   - - guideDescription = 'Virtual Base Class' -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        getComponents(self, - fit) -

        -         		source code  -
        - - 
        -Get RietveldComponents from Fit instance
-This function is intended to be overriden in special case
-
-Arguement:
-- fit   :   Fit instance
-
-Return  :   list of list RietveldComponent
-
-
        -
        -
        Overrides: - InstrumentGuide.getComponents -
        -
        -
        -
        - -
        - -
        - - -
        -

        getRietveldObjects(self, - component) -

        -         		source code  -
        - - 
        -Get Pattern that holds the zero-shift parameter
-
-Argument:   
-- component :   RietveldComponent
-
-Return      :   list, [rietveld-object (main), rietvel]
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        generateRefineSetup(self, - rietveldobjects, - stage=1) -

        -         		source code  -
        - - 
        -Generate RefinementSetup for this specific RefineGuide
-
-Argument:
-- rietveldobjects   :   list of list of Rietveld objects
-- stage             :   int
-
-Return              :   RefineSetup
-
-
        -
        -
        Overrides: - RefineGuide.generateRefineSetup -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
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        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refineguides.WavelengthGuide-class.html b/static_root/doc/srrietveld/developers/srrietveld.refineguides.WavelengthGuide-class.html deleted file mode 100644 index d09573f0..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refineguides.WavelengthGuide-class.html +++ /dev/null @@ -1,530 +0,0 @@ - - - - - srrietveld.refineguides.WavelengthGuide - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refineguides :: - Class WavelengthGuide - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class WavelengthGuide

        source code

        -
        -RefineGuide --+    
-              |    
-InstrumentGuide --+
-                  |
-                 WavelengthGuide
-
        - -
        -Guidance to refine wavelength parameters

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        getRietveldObjects(self, - component)
        - Get Pattern that holds the zero-shift parameter...        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetup(self, - rietveldobjects, - stage=1)
        - Generate RefinementSetup for this specific RefineGuide...        		 - source code - -
        - -
            Inherited from InstrumentGuide
        -   - - - - - - -
        getComponents(self, - fit)
        - Get RietveldComponents from Fit instance...        		 - source code - -
        - -
        -   - - - - - - -
        getGuideConfig(self, - fit, - stage=1)
        - return how many steps to refine parameters ...        		 - source code - -
        - -
        -   - - - - - - -
        getRefineAllConfig(self, - fit, - stage=1)
        - Obtain the information to refine all the paramaters ...        		 - source code - -
        - -
            Inherited from RefineGuide
        -   - - - - - - -
        __init__(self)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - return the format reprensentation of this RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetupDictionary(self, - refinesetuplist, - stage=1, - refineseq=False)
        - Use temporary refinesetuplist to set up a dictionary -(instance variable) to hold the RefineSetup, Rietveld Object and naming indices -for each refinement procedure (step number starting from 1) - -Argument: -- refinesetuplist : list of 3-tuples: - RefineSetup, list of list of Rietveld objects, list of int (indices) -- stage : int -- refineseq : boolean.        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self)
        - Return the (maximum) number of refinement steps scheduled by this - refinement guide        		 - source code - -
        - -
        -   - - - - - - -
        getNumStages(self)
        - Report the number of stages of this RefineGuide to use        		 - source code - -
        - -
        -   - - - - - - -
        getRefinedVariablesList(self)
        - get the list of refined variables with necessary information, - i.e., self._variableslist        		 - source code - -
        - -
        -   - - - - - - -
        reset(self)
        - Reset the RefineGuide set up for a certain Fit instance        		 - source code - -
        - -
        -   - - - - - - -
        resetVisitRecord(self)
        - Reset the visiting record (gVisit)        		 - source code - -
        - -
        -   - - - - - - -
        setGuideStep(self, - fit, - step=1, - stage=1, - dry=False)
        - Turn on variables scheduled at a certain step in current refine - guidance        		 - source code - -
        - -
        -   - - - - - - -
        turnOff(self, - fit)
        - turn the parameters/variables off from refining,...        		 - source code - -
        - -
        - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
            Inherited from RefineGuide
        -   - - guideDescription = 'Virtual Base Class' -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        getRietveldObjects(self, - component) -

        -         		source code  -
        - - 
        -Get Pattern that holds the zero-shift parameter
-
-Argument:   
-- component :   RietveldComponent
-
-Return      :   list, [rietveld-object (main), rietvel]
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        generateRefineSetup(self, - rietveldobjects, - stage=1) -

        -         		source code  -
        - - 
        -Generate RefinementSetup for this specific RefineGuide
-
-Argument:
-- rietveldobjects   :   list of list of Rietveld objects
-- stage             :   int
-
-Return              :   RefineSetup
-
-
        -
        -
        Overrides: - RefineGuide.generateRefineSetup -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
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        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refineguides.ZeroGuide-class.html b/static_root/doc/srrietveld/developers/srrietveld.refineguides.ZeroGuide-class.html deleted file mode 100644 index 1924049c..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refineguides.ZeroGuide-class.html +++ /dev/null @@ -1,530 +0,0 @@ - - - - - srrietveld.refineguides.ZeroGuide - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refineguides :: - Class ZeroGuide - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class ZeroGuide

        source code

        -
        -RefineGuide --+    
-              |    
-InstrumentGuide --+
-                  |
-                 ZeroGuide
-
        - -
        -Guidance to refine zero parameters

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        getRietveldObjects(self, - component)
        - Get Pattern that holds the zero-shift parameter...        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetup(self, - rietveldobjects, - stage=1)
        - Generate RefinementSetup for this specific RefineGuide...        		 - source code - -
        - -
            Inherited from InstrumentGuide
        -   - - - - - - -
        getComponents(self, - fit)
        - Get RietveldComponents from Fit instance...        		 - source code - -
        - -
        -   - - - - - - -
        getGuideConfig(self, - fit, - stage=1)
        - return how many steps to refine parameters ...        		 - source code - -
        - -
        -   - - - - - - -
        getRefineAllConfig(self, - fit, - stage=1)
        - Obtain the information to refine all the paramaters ...        		 - source code - -
        - -
            Inherited from RefineGuide
        -   - - - - - - -
        __init__(self)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - return the format reprensentation of this RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        generateRefineSetupDictionary(self, - refinesetuplist, - stage=1, - refineseq=False)
        - Use temporary refinesetuplist to set up a dictionary -(instance variable) to hold the RefineSetup, Rietveld Object and naming indices -for each refinement procedure (step number starting from 1) - -Argument: -- refinesetuplist : list of 3-tuples: - RefineSetup, list of list of Rietveld objects, list of int (indices) -- stage : int -- refineseq : boolean.        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self)
        - Return the (maximum) number of refinement steps scheduled by this - refinement guide        		 - source code - -
        - -
        -   - - - - - - -
        getNumStages(self)
        - Report the number of stages of this RefineGuide to use        		 - source code - -
        - -
        -   - - - - - - -
        getRefinedVariablesList(self)
        - get the list of refined variables with necessary information, - i.e., self._variableslist        		 - source code - -
        - -
        -   - - - - - - -
        reset(self)
        - Reset the RefineGuide set up for a certain Fit instance        		 - source code - -
        - -
        -   - - - - - - -
        resetVisitRecord(self)
        - Reset the visiting record (gVisit)        		 - source code - -
        - -
        -   - - - - - - -
        setGuideStep(self, - fit, - step=1, - stage=1, - dry=False)
        - Turn on variables scheduled at a certain step in current refine - guidance        		 - source code - -
        - -
        -   - - - - - - -
        turnOff(self, - fit)
        - turn the parameters/variables off from refining,...        		 - source code - -
        - -
        - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
            Inherited from RefineGuide
        -   - - guideDescription = 'Virtual Base Class' -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        getRietveldObjects(self, - component) -

        -         		source code  -
        - - 
        -Get Pattern that holds the zero-shift parameter
-
-Argument:   
-- component :   RietveldComponent
-
-Return      :   list, [rietveld-object (main), rietvel]
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        generateRefineSetup(self, - rietveldobjects, - stage=1) -

        -         		source code  -
        - - 
        -Generate RefinementSetup for this specific RefineGuide
-
-Argument:
-- rietveldobjects   :   list of list of Rietveld objects
-- stage             :   int
-
-Return              :   RefineSetup
-
-
        -
        -
        Overrides: - RefineGuide.generateRefineSetup -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
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        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinehistory-module.html b/static_root/doc/srrietveld/developers/srrietveld.refinehistory-module.html deleted file mode 100644 index 10e7574d..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinehistory-module.html +++ /dev/null @@ -1,197 +0,0 @@ - - - - - srrietveld.refinehistory - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
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        - - Package srrietveld :: - Module refinehistory - - - - - - -
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        -
        - -

        Module refinehistory

        source code

        -

        Refine-History provides the auxiliary classes and external methods for - Multiple-step refinement controller

        - Created On: 2008.09.17

        - - - - - - - - - - -
        - - - - - -
        Classes[hide private]
        -
        -   - - RefineHistory
        - Class RefineHistory records how a multiple-step refinement - proceeds in a concise and informative manner. -
        - - - - - - - - - -
        - - - - - -
        Variables[hide private]
        -
        -   - - __id__ = '$Id: refinehistory.py 2792 2009-03-02 15:56:43Z wdzh... -
        - - - - - - -
        - - - - - -
        Variables Details[hide private]
        -
        - -
        - -
        -

        __id__

        - -
        -
        -
        -
        Value:
        - 
        -'$Id: refinehistory.py 2792 2009-03-02 15:56:43Z wdzhou $'
-
        -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinehistory-pysrc.html b/static_root/doc/srrietveld/developers/srrietveld.refinehistory-pysrc.html deleted file mode 100644 index 0e8c03a9..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinehistory-pysrc.html +++ /dev/null @@ -1,300 +0,0 @@ - - - - - srrietveld.refinehistory - - - - - - - - - - - - - - - - - - - - - - -
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        -
        -

        Source Code for Module srrietveld.refinehistory

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2008 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Wenduo Zhou 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14   
- 15  """ 
- 16    Refine-History provides the auxiliary classes and external methods for  
- 17    Multiple-step refinement controller  
- 18     
- 19    Created On: 2008.09.17 
- 20  """ 
- 21  __id__ = "$Id: refinehistory.py 2792 2009-03-02 15:56:43Z wdzhou $" 
- 22   
-
         23 -class RefineHistory(object): 
-
         24      """ 
- 25      Class RefineHistory records how a multiple-step refinement proceeds 
- 26      in a concise and informative manner.  
- 27      It will serve the users with insight about the refinements.  
- 28   
- 29      Methods List: 
- 30      @ __init__ 
- 31       
- 32      * Contruction: 
- 33      @ addInfoOfStep(self, step, reftype, residtuple, varnameslist) 
- 34      @ addSkipStep(self, step) 
- 35   
- 36      * Information Retrieval: 
- 37      @ getResidueValues(self, step) 
- 38       
- 39      * Internal 
- 40      @ getNewVariablesList(self, step) 
- 41   
- 42      Class Variables: 
- 43      @ 
- 44      """ 
-
         45 -    def __init__(self): 
-
         46          """ 
- 47          initialization 
- 48          """ 
- 49          self._numsteps = 0 
- 50          self._refType  = {} 
- 51          self._rp       = {} 
- 52          self._chi2     = {} 
- 53          self._rwp      = {} 
- 54          self._re       = {} 
- 55          self._varNames = {} 
- 56          self._skipStepsList = [] 
- 57          return 
-
         58   
- 59   
-
         60 -    def __str__(self): 
-
         61          """ 
- 62          Customized output 
- 63          """ 
- 64          rstring  = "" 
- 65          rstring += "%-10s%-10s%-10s%-15s%-40s\n"%("Step", "Skip", "Type", "Rp", "New Variables") 
- 66          for step in xrange(self._numsteps): 
- 67              if self._skipStepsList.count(step) == 0: 
- 68                  skipbool = False 
- 69              else: 
- 70                  skipbool = True 
- 71              newvarnames = self.getNewVariablesList(step) 
- 72              rstring += "%-10s%-10s%-10s%-15s%-40s\n"% \ 
- 73                  (step, skipbool, self._refType[step], self._rp[step], newvarnames) 
- 74   
- 75          return rstring 
-
         76   
- 77   
-
         78 -    def addInfoOfStep(self, step, reftype, residtuple, varnameslist): 
-
         79          """ 
- 80          Set the information of for a certain step 
- 81   
- 82          Arguement: 
- 83          - step      :   int, step number 
- 84          - reftype   :   str, "l" or "r" for Le-Bail or Rietveld 
- 85          - residtuple:   tuple of floats as rp, chi2, rwp, re 
- 86          - varnameslist: list, names of variables refined 
- 87          """ 
- 88          self._refType[step] = reftype 
- 89          self._rp[step], self._chi2[step], self._rwp[step], self._re[step] = residtuple 
- 90          self._varNames[step] = varnameslist[:] 
- 91   
- 92          self._numsteps = step+1 
- 93   
- 94          return 
-
         95   
- 96   
-
         97 -    def addSkipStep(self, step): 
-
         98          """ 
- 99          add a step to be step skipped 
-100   
-101          Argument: 
-102          - step  :   int, step number 
-103   
-104          Return  :   None 
-105          """ 
-106          self._skipStepsList.append(step) 
-107   
-108          return 
-
        109   
-110   
-
        111 -    def getResidueValues(self, step): 
-
        112          """ 
-113          Get all the 4 residue values of a certain step 
-114   
-115          Arguement: 
-116          - step  :   int 
-117   
-118          Return  :   4-float-tuple (rp, chi2, rwp, rexp) 
-119          """ 
-120          rtuple = (self._rp[step], self._chi2[step], self._rp[step], self._re[step]) 
-121   
-122          return rtuple 
-
        123   
-124   
-
        125 -    def getNewVariablesList(self, step): 
-
        126          """ 
-127          Get the new added refined variables 
-128   
-129          Arguement: 
-130          - step  :   int, step number 
-131   
-132          Return  :   list of str as variables names 
-133          """ 
-134          rlist = [] 
-135   
-136          if step == 0: 
-137              return rlist 
-138   
-139          else: 
-140              currvarlist = self._varNames[step] 
-141              prevvarlist = self._varNames[step-1] 
-142              for varname in currvarlist: 
-143                  if prevvarlist.count(varname) == 0: 
-144                      rlist.append(varname) 
-145          # END-IF-ELSE 
-146   
-147          return rlist 
-
        148   
-
        -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinehistory.RefineHistory-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinehistory.RefineHistory-class.html deleted file mode 100644 index 4d1c45c7..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinehistory.RefineHistory-class.html +++ /dev/null @@ -1,473 +0,0 @@ - - - - - srrietveld.refinehistory.RefineHistory - - - - - - - - - - - - - - - - - - - - - - -
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        - - Package srrietveld :: - Module refinehistory :: - Class RefineHistory - - - - - - -
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        - -

        Class RefineHistory

        source code

        -
        -object --+
-         |
-        RefineHistory
-
        - -
        -

        Class RefineHistory records how a multiple-step refinement proceeds in - a concise and informative manner. It will serve the users with insight - about the refinements.

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        Methods List: @ __init__

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        * Contruction: @ addInfoOfStep(self, step, reftype, residtuple, - varnameslist) @ addSkipStep(self, step)

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        * Information Retrieval: @ getResidueValues(self, step)

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-Set the information of for a certain step
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-Arguement:
-- step      :   int, step number
-- reftype   :   str, "l" or "r" for Le-Bail or Rietveld
-- residtuple:   tuple of floats as rp, chi2, rwp, re
-- varnameslist: list, names of variables refined
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-- step  :   int, step number
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-Return  :   list of str as variables names
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           Home      Trees      Indices      Help   
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        - - Package srrietveld :: - Module refinemanager - - - - - - -
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        Module refinemanager

        source code

        -
        -
-Single fit control for refinement featuring
-a. multiple-step Rietveld fitting controller
-b. real time refinement result analysis
-c. multiple-step refinement based on restrict order
-d. multiple-step refinement with recommended order
-
-Class MultiStepRefineManager
-
-  * Setup & Refine Methods
-     -  __init__(self, myfit)
-     -  refine(self, refinestrategy)
-     -  save(self, savefilename=None)
-
-  * Information Retrieval Methods
-     -  getRefineStrategy(self)
-     -  getCurrentFit(self)
-     -  getBestStep(self)
-     -  getNumSteps(self)
-     -  getFitOfStep(self, step)
-     -  getFitDetailOfStep(self, step)
-     -  getHistory(self)
-
-  * Private Methods
-     -  getPrevStepRefinedVariables(self, thestep)  
-     -  leapBack(self, backstep)
-     -  recordSolution(self, stepinfotuple, refinedetail, varnameslist)
-
-
-External Functions
--  loadMultiStepRefinements()
-
-a. refineguidePoolGenerator()
-b. getPermutationList(itemlist)
-c. getProcessID()
-
-
-Created On: 2008.06.02
-
-


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        -   - - MultiStepRefineManager
        - Class to realize central controling on multiple step refinement -on a single structure refinement may covering from -Le-Bail (peak profile matching) and Rietveld Refinement - -This class is designed towards automatic refinement - -Scenario to Use: -> mm = MultiStepRefineManager(myfit) -> mm.refine(POWGENRefineControl()) -> mm.showResult() -> ... -
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        - Open a pickle file and load a MultiStepRefinementManager ...        		 - source code - -
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        -   - - __id__ = '$Id: refinemanager.py 2918 2009-03-18 19:26:39Z wdzh... -
        -   - - _DEBUG = True -
        -   - - _DEBUG01 = False -
        -   - - _DBOUTPUT = False -
        -   - - _MEMCHECK = False -
        -   - - _SCREENOUTPUT = True -
        -   - - myEngine = <diffpy.srrietveld.refinebackend.RietveldEngine ins... -
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        loadMultiStepRefinements(picklefname) -

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-Open a pickle file and load a MultiStepRefinementManager 
-
-Arguments:
-- picklefname:  string, pickle file name
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-Return      :   MultiStepRefinementManager instance
-
-Exception   :
-- Pickle file error
-- Loaded object is not MultiStepRefinementManager
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        isSinglePatternType(myfit) -

        -         		source code  -
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        -To find out whether a Fit instance is composed of single type of Pattern
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-Argument:
-- myfit :   Fit
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-Return  :   boolean
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        myEngine

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        -<diffpy.srrietveld.refinebackend.RietveldEngine instance at 0xb7ac124c\
->
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           Home      Trees      Indices      Help   
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        Source Code for Module srrietveld.refinemanager

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2008 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Wenduo Zhou 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14  """ 
- 15    Single fit control for refinement featuring 
- 16    a. multiple-step Rietveld fitting controller 
- 17    b. real time refinement result analysis 
- 18    c. multiple-step refinement based on restrict order 
- 19    d. multiple-step refinement with recommended order 
- 20   
- 21    Class MultiStepRefineManager 
- 22   
- 23      * Setup & Refine Methods 
- 24         -  __init__(self, myfit) 
- 25         -  refine(self, refinestrategy) 
- 26         -  save(self, savefilename=None) 
- 27   
- 28      * Information Retrieval Methods 
- 29         -  getRefineStrategy(self) 
- 30         -  getCurrentFit(self) 
- 31         -  getBestStep(self) 
- 32         -  getNumSteps(self) 
- 33         -  getFitOfStep(self, step) 
- 34         -  getFitDetailOfStep(self, step) 
- 35         -  getHistory(self) 
- 36   
- 37      * Private Methods 
- 38         -  getPrevStepRefinedVariables(self, thestep)   
- 39         -  leapBack(self, backstep) 
- 40         -  recordSolution(self, stepinfotuple, refinedetail, varnameslist) 
- 41   
- 42   
- 43    External Functions 
- 44    -  loadMultiStepRefinements() 
- 45   
- 46    a. refineguidePoolGenerator() 
- 47    b. getPermutationList(itemlist) 
- 48    c. getProcessID() 
- 49   
- 50   
- 51    Created On: 2008.06.02 
- 52  """ 
- 53  __id__ = "$Id: refinemanager.py 2918 2009-03-18 19:26:39Z wdzhou $" 
- 54   
- 55  import  os 
- 56  from    diffpy.refinementapi.exceptiontools import verifyType 
- 57  from    diffpy.refinementapi.errors         import FitConfigurationError 
- 58  from    diffpy.srrietveld                          import * 
- 59  import  diffpy.rietveldapi.Fit              as     APIFit 
- 60  from    diffpy.srrietveld                          import * 
- 61   
- 62  _DEBUG = True 
- 63  _DEBUG01 = False 
- 64  _DBOUTPUT = False 
- 65  _MEMCHECK = False 
- 66  _SCREENOUTPUT = True 
- 67   
-
         69      """ 
- 70      Class to realize central controling on multiple step refinement 
- 71      on a single structure refinement may covering from 
- 72      Le-Bail (peak profile matching) and Rietveld Refinement 
- 73   
- 74      This class is designed towards automatic refinement 
- 75   
- 76      Scenario to Use: 
- 77      > mm = MultiStepRefineManager(myfit) 
- 78      > mm.refine(POWGENRefineControl()) 
- 79      > mm.showResult() 
- 80      > ... ... 
- 81   
- 82      Class Variable: 
- 83      _stepsize:          integer for multiple step refinement, 1<=stepsize 
- 84      _rgpool:            dictionary of list of RefineGuides:  RefineGuidePool = rgpool 
- 85                          like 2-D array (matrix) 
- 86                          rgpool[i][j]:   i -> refine at i-th step 
- 87                                          j -> all RefineGuides at i-th step will be refined in all permutated sequence 
- 88      _currFit :          current Fit instance 
- 89      _currStep           current step for current Fit  
- 90      _curGuidesList:     current RefineGuides list (no sequence) 
- 91      _fitsInfoList:      list of 4-tuples including: 
- 92                          1. Fit instance 
- 93                          2. Refine-Detail instance 
- 94                          3. 3-tuple as Step-information 
- 95                          4. Variable Names List 
- 96      _skipStepsList:     list of int for steps that are skipped because of bad refinement 
- 97      """ 
-
         98 -    def __init__(self, myfit): 
-
         99          """ Initialization 
-100   
-101          Arguement: 
-102          - myfit :   Fit instance 
-103   
-104          Return  :   None 
-105          """ 
-106          import time 
-107   
-108          verifyType(myfit, APIFit.Fit) 
-109   
-110          # 1.  Set up class variable 
-111          self._currFit  = myfit 
-112          self._currStep = 0 
-113   
-114          self._fitsInfoList  = [] 
-115          self._fitsPool      = {} 
-116          self._skipStepsList = [] 
-117           
-118          # 2. Memory check if necessary  
-119          if _MEMCHECK is True: 
-120              import monitormem as MM 
-121              mem_mon = MM.MemoryMonitor() 
-122              mem_mon.register(self._currFit) 
-123              mem_mon.register(self._currFit._srfit) 
-124          # END-IF 
-125   
-126          return 
-
        127   
-128   
-
        129 -    def getRefineStrategy(self): 
-
        130          """ 
-131          Give the refine strategy used now 
-132          """ 
-133          return self._refinestrategy 
-
        134   
-135   
-
        136 -    def getCurrentFit(self): 
-
        137          """ 
-138          Provide the handler to the current Fit instance 
-139   
-140          Return  :   Fit instance 
-141          """ 
-142          return self._currFit 
-
        143   
-144   
-
        145 -    def refine(self, refinestrategy, weightscheme="standard"): 
-
        146          """ 
-147          Multiple-step refinement on starting Fitting configuration according to input  
-148          refinement strategy 
-149   
-150          Automatic refinement will be based on some heuristic 'refinement strategy' 
-151          coupled with some algorithm with automatic judgement 
-152   
-153          Status  :   coded 
-154          Type    :   basic 
-155   
-156          Assumption: 
-157          1. In each Refine-Guide-Step, NO Rietveld object will be removed or replaced 
-158          2. In different Refine-Guide-Steps, Rietveld object may be removed or replaced 
-159   
-160          Argument 
-161          - refinestrategy    :   RefineStrategy object 
-162          - weightscheme      :   str, refining weighting scheme, {standard, unit-weight} 
-163   
-164          Return              :   2-tuple:  RefineDetail, str (process ID) 
-165          """ 
-166          import diffpy.srrietveld.refinehistory as RH 
-167   
-168          # A. Information Process 
-169          self._refinestrategy        = refinestrategy 
-170          self._prevRefineGuidesList  = [] 
-171          self._stepMapDict           = {} 
-172          self._refhistory            = RH.RefineHistory() 
-173          numguidesteps               = refinestrategy.getNumRefineGuideSteps() 
-174          overallstep = 0     # used to record over all step from 0, 0 is dry run 
-175   
-176          # B. Backup Directory  
-177          processid = getProcessID() 
-178          self._processid = processid 
-179          os.mkdir(processid) 
-180   
-181          # Step 1: A Dry Run 
-182          refinedetail = self._currFit.refine(cycle=5, srtype="lebail", mode="refine", signature=["dry", processid]) 
-183   
-184          if refinedetail.getRefineStatus() is False: 
-185              failreason = refinedetail.getFailReason() 
-186              # Deal with any fail reason 
-187              if failreason == "Excessive Peak Overlap": 
-188                  errmsg = "Refinement Fail Reason:  %-20s;  Suggest to modify Excluded Region;  Refinement Stopped"% (failreason) 
-189                  print "\n%-40s\n"% (errmsg) 
-190                  raise FitConfigurationError(errmsg) 
-191              else: 
-192                  print "Refinement Fail Reason:  %-20s"% (failreason) 
-193   
-194          self.recordSolution("dry", refinedetail, []) 
-195          currRwp = refinedetail.getResidueValue(-1, residname="rwp") 
-196          self._refhistory.addInfoOfStep(0, "lebail", refinedetail.getResidueValue(-1, residname="all"), []) 
-197   
-198          # Loop Leve 1 
-199          prevrefinetype = None 
-200          absstep        = 0 
-201          for strategystep in xrange(1, numguidesteps+1): 
-202   
-203              # 0.  Prepare 
-204              prevRwp = currRwp 
-205              self._stepMapDict[strategystep] = [] 
-206   
-207              # 1.  Add RefineGuide in Previous Guide-Step and Set up Refinement 
-208              #     Condition (1) guidestep > 1, i.e., not 1st guide 
-209              #               (2) discontinue between LeBail and Rietveld  
-210              guideslist    = self._refinestrategy.getRefineGuidesOfStep(strategystep) 
-211              currefinetype = self._refinestrategy.getRefineTypeOfStep(strategystep) 
-212              if prevrefinetype != currefinetype: 
-213                  # 1.1 Reset prevRefinedVariablesList due to a new refinement type 
-214                  prevRefinedVariablesList = [] 
-215   
-216              # 2. Get 'new' guide list for refine steps number and  
-217              #    max refine steps (guideslist (new guide)) 
-218              maxnumrefinesteps  = 0 
-219              for rguide, stage in guideslist: 
-220   
-221                  rguide.getGuideConfig(self._currFit, stage) 
-222   
-223                  numrefinesteps = rguide.getNumRefineSteps() 
-224                  if numrefinesteps > maxnumrefinesteps: 
-225                      maxnumrefinesteps = numrefinesteps 
-226   
-227                  if _DEBUG is True: 
-228                      msg = "Guide: %-20s  Stage = %-5s  Num-Refine-Steps = %-5s\n" % \ 
-229                              (rguide.__class__.__name__, stage, maxnumrefinesteps) 
-230                      print msg 
-231                  # END-IF 
-232              # LOOP OVER - for guide in guideslist: 
-233   
-234              # 3. refine one step by step... and output  
-235              # Loop Level 2 
-236              for refinestep in xrange(1, maxnumrefinesteps+1): 
-237   
-238                  # Loop Level 3 
-239                  for gindex in xrange(len(guideslist)): 
-240                      # 3.0 Get guide, stage; reset refine variable list 
-241                      guide, stage = guideslist[gindex] 
-242                      if currefinetype != prevrefinetype: 
-243                          prevRefineVariablesList = [] 
-244                   
-245                      # 3.1  Set previous setup (due to fixAll) RefineGuides ... 
-246                      for rtuple in prevRefinedVariablesList: 
-247                          constraint, rietobj, parname = rtuple 
-248                          self._currFit.mapVP(constraint, rietobj, parname) 
-249   
-250                      # 3.2 Variables Set To Refine All NEW Parameters/Variables 
-251                      #  and Update current step refined variable tuple list 
-252                      tempvartupleslist = guide.setGuideStep(self._currFit, refinestep, stage, dry=False) 
-253                      if not self._refinestrategy.removeGuideAtStep(strategystep): 
-254                          prevRefinedVariablesList.extend(tempvartupleslist) 
-255                      varnameslist = self._currFit.getRefinedVariablesList() 
-256   
-257                      if _SCREENOUTPUT is True: 
-258                          refmsg  = "Guide Step = %-10s    Over-all Step = %-5s  Refine-Type = %-10s\n"% \ 
-259                              (gindex, overallstep, currefinetype) 
-260                          refmsg += "%-10sNew Variables: \n"% ("") 
-261                          firstline = True 
-262                          for vartuple in tempvartupleslist: 
-263                              if firstline is True: 
-264                                  firstline = False 
-265                                  refmsg += "%-20s%-20s:  %-20s\n"% ("", vartuple[0], vartuple[2]) 
-266                              else: 
-267                                  refmsg += "%-20s%-20s:  %-20s\n"% ("", vartuple[0], vartuple[2]) 
-268                          print refmsg 
-269                      # END-IF  
-270   
-271                      # 3.3   Refine, record and analysis 
-272                      # 3.3.1 Prepare for controlling parameters 
-273                      sig = str(strategystep)+"_"+str(refinestep)+"_"+str(gindex) 
-274                      overallstep += 1 
-275   
-276                      # 3.3.2 Refine and record 
-277                      refinedetail = self._currFit.refine(srtype=currefinetype, weightscheme=weightscheme, mode="refine", signature=[sig, processid]) 
-278                      self.recordSolution( (strategystep, refinestep, gindex), refinedetail, varnameslist ) 
-279                      self._stepMapDict[strategystep].append(len(self._fitsInfoList)-1) 
-280                      if refinedetail.getRefineStatus() is True: 
-281                          residtuple = refinedetail.getResidueValue(-1, residname="all") 
-282                      else: 
-283                          residtuple = [1.0E+20, 1.0E+20, 1.0E+20, 1.0E+20] 
-284                      self._refhistory.addInfoOfStep(overallstep, currefinetype, residtuple, varnameslist) 
-285   
-286                      # 3.3.3 Analyze result to see (1) 'leapback' is necessary or not 
-287                      rewind = False 
-288                      # Analysis 1: refinement error 
-289                      if refinedetail.getRefineStatus() is False: 
-290                          rewind = True 
-291                          if _SCREENOUTPUT is True: 
-292                              errmsg = "Warning!  Refine Fail Reason:  %-30s"% (refinedetail.getFailReason()) 
-293                              print errmsg 
-294                      else: 
-295                          # Analysis 2: a worse Rwp 
-296                          currRwp = refinedetail.getResidueValue(-1, residname="rwp") 
-297                          if prevrefinetype == currefinetype: 
-298                              if (rewind is False and prevRwp*1.25 < currRwp) or (currRwp< 0): 
-299                                  rewind = True 
-300                      # END-IF: refinedetail.getRefineStatus() is False: 
-301                            
-302                      # 3.3.4 Re-wind/leap back by 1 
-303                      if rewind is True: 
-304                          self._refhistory.addSkipStep(overallstep) 
-305                          prevRefinedVariablesList, prevrefinetype, newguideslist, currrefstep = self.leapBack(1) 
-306                          if newguideslist is not None: 
-307                              guideslist = newguideslist 
-308                          currRwp = self._fitsInfoList[-2][1].getResidueValue(-1, residname="rwp") 
-309                      else: 
-310                          # update control parameter 
-311                          prevrefinetype = currefinetype 
-312                               
-313                      # 3.4 Interval Output 
-314                      if _DBOUTPUT: 
-315                          msg = "%-20schi2 = %-20s    Refining\n"% ("", self._currFit.getChi2()) 
-316                          sortedlist = sorted(varnameslist) 
-317                          ct = 0 
-318                          for varname in sortedlist: 
-319                              if ct == 0: 
-320                                  msg += "%-20s"% ("") 
-321                              msg += "%-20s"% (varname) 
-322                              if ct == 3: 
-323                                  msg += "\n" 
-324                                  ct = 0 
-325                              else: 
-326                                  ct += 1 
-327                          print msg 
-328   
-329                      # 3.5 Memory Check  Flag  1239 SrRietveld 
-330                      if _MEMCHECK is True: 
-331                          import diffpy.srrietveld.monitormem as MM 
-332                          MM.garbageCheck(True) 
-333   
-334                      if _SCREENOUTPUT is True:   # 1446 
-335                          chi2 = refinedetail.getResidueValue(-1, residname="chi2") 
-336                          rp   = refinedetail.getResidueValue(-1, residname="rp") 
-337                          re   = refinedetail.getResidueValue(-1, residname="re") 
-338                          rtyp = refinedetail.getRefineType() 
-339                          msg = "%-10s:  Chi2 = %-15s   Rp = %-15s  Rexp = %-15s"% (rtyp, chi2, rp, re) 
-340                          print msg 
-341                      # END-IF 
-342   
-343                  # LOOP OVER -- for gindex  
-344   
-345              # LOOP OVER -- for step in xrange(1, maxnumsteps+1) 
-346   
-347              # 3.5 automatic background selection with 'reflection list'  
-348              refinestrategy.offRefinementProcess(self._currFit, strategystep) 
-349   
-350          # LOOP OVER -- for strategystep in xrange(1, 3+1) 
-351   
-352          self._finalstep = self.getBestStep() 
-353          refinedetail = self._fitsInfoList[self._finalstep][1] 
-354   
-355          return (refinedetail, processid) 
-
        356   
-357      # END-DEF refine(self, refinestrategy) 
-358   
-359   
-
        360 -    def getBestStep(self): 
-
        361          """ 
-362          Get the best step according to Rwp 
-363   
-364          Return  :   int 
-365          """ 
-366          finalrefinetype = self._refinestrategy.getRefineTypeOfStep(-1) 
-367   
-368          totalnumrefines = len(self._fitsInfoList) 
-369          bestrefinedetail = self._fitsInfoList[-1][1] 
-370          beststep         = totalnumrefines-1 
-371          for rn in xrange(totalnumrefines-1): 
-372              currstep = totalnumrefines-2-rn 
-373              currrefinedetail = self._fitsInfoList[currstep][1] 
-374               
-375              bestrp = bestrefinedetail.getResidueValue(-1, residname="rp")  
-376              currrp = currrefinedetail.getResidueValue(-1, residname="rp") 
-377              curtyp = currrefinedetail.getRefineType()  
-378   
-379              if (bestrp < 0) or ((currrp > 0) and (currrp < bestrp and finalrefinetype[0] == curtyp[0])): 
-380                  bestrefinedetail = currrefinedetail 
-381                  beststep         = currstep 
-382   
-383          # LOOP-OVER: for rn in xrange(totalnumrefines-1): 
-384   
-385          return beststep 
-
        386   
-387   
-
        388 -    def getNumSteps(self): 
-
        389          """ 
-390          Get the number of total refinement steps in this multiple step fit 
-391   
-392          Return  :   int 
-393          """ 
-394          return len(self._fitsInfoList) 
-
        395   
-396   
-
        397 -    def getFitOfStep(self, step): 
-
        398          """ 
-399          Get the Fit object as the result after a specific step 
-400   
-401          Arguments: 
-402          - step  :   int,  
-403   
-404          Return  :   Fit instance 
-405          """ 
-406          thisfit, refinedetail, indiceslist, varnameslist = self._fitsInfoList[step] 
-407   
-408          return thisfit 
-
        409   
-410   
-
        411 -    def getFitDetailOfStep(self, step): 
-
        412          """ 
-413          Get the Fit object as the result after a specific step 
-414   
-415          Arguments: 
-416          - step  :   int,  
-417   
-418          Return  :   Fit instance 
-419          """ 
-420          thisfit, refinedetail, indiceslist, varnameslist = self._fitsInfoList[step] 
-421   
-422          return refinedetail 
-
        423   
-424   
-
        425 -    def getPrevStepRefinedVariables(self, thestep):   
-
        426          """ 
-427          Get the refined variables refined in the previous refine steps 
-428          in a certain Refine-Strategy 
-429          The step here means the over-all step number 
-430   
-431          The drawback is that at each refinement step,  
-432          the previously refined parameters/variables will have to be reviewed 
-433          in case the change of self._currFit, 
-434          such that the speed of the program may be affected.  
-435          But in all senses, comparing to refinement, this kind of review won't 
-436          be significant.  
-437   
-438          Because it is possible that Rietveld objects in Curr-Fit instance 
-439          are replaced or changed due to some strategy/algorithm, 
-440          the variables should be re-guided 
-441   
-442          Level           :   Basic 
-443          Coding          :   Finished 
-444   
-445          Argument: 
-446          - thestep       :   int, step number, such that any step prior to this one,  
-447                              including this one will be set up 
-448   
-449          Return          :   2-tuple,  
-450                              1.  list of 3-tuples as  
-451                              (constraint/variable-name, Rietveld object, parameter-name) 
-452                              2.  str: previous-refine type 
-453          """ 
-454          # Init setup 
-455          numguidesteps = self._refinestrategy.getNumRefineGuideSteps() 
-456          overallstep   = 0 
-457          prevrefinetype = None 
-458   
-459          # Loop Leve 1 
-460          quitsearch = False 
-461          for strategystep in xrange(1, numguidesteps+1): 
-462   
-463              # 1. Get 'new' guide list for refine steps number and  
-464              #    max refine steps (guideslist (new guide)) 
-465              guideslist = self._refinestrategy.getRefineGuidesOfStep(strategystep) 
-466              refinetype = self._refinestrategy.getRefineTypeOfStep(strategystep) 
-467              
-468              maxnumrefinesteps  = 0 
-469              for rguide, stage in guideslist: 
-470                  numrefinesteps = rguide.getGuideConfig(self._currFit, stage) 
-471                  if numrefinesteps > maxnumrefinesteps: 
-472                      maxnumrefinesteps = numrefinesteps 
-473              # LOOP OVER - for guide in guideslist: 
-474   
-475              # 2. Clean variables list for changing refine type 
-476              if prevrefinetype != refinetype: 
-477                  prevRefinedVariablesList = [] 
-478                  prevrefinetype = refinetype 
-479   
-480              # Loop Level 2 
-481              for refinestep in xrange(1, maxnumrefinesteps+1): 
-482   
-483                  # Loop Level 3 
-484                  for gindex in xrange(len(guideslist)): 
-485                      guide, stage = guideslist[gindex] 
-486                      overallstep += 1 
-487                   
-488                      #  Variables Set To Refine All NEW Parameters/Variables 
-489                      #  and Update current step refined variable tuple list 
-490                      if self._skipStepsList.count(overallstep) == 0: 
-491                          tempvartupleslist = guide.setGuideStep(self._currFit, refinestep, stage, dry=True) 
-492                          prevRefinedVariablesList.extend(tempvartupleslist) 
-493   
-494                      #   Flow control 
-495                      if overallstep == thestep: 
-496                          quitsearch = True 
-497                      if quitsearch is True: 
-498                          break 
-499                  # LOOP OVER -- for gindex  
-500   
-501                  if quitsearch is True: 
-502                      break 
-503   
-504              # LOOP OVER -- for step in xrange(1, maxnumrefinesteps+1) 
-505   
-506              if quitsearch is True: 
-507                  break 
-508   
-509          # LOOP OVER -- for strategystep in xrange(1, 3+1) 
-510   
-511          return ( (prevRefinedVariablesList, refinetype) ) 
-
        512   
-513   
-
        514 -    def save(self, savefilename = None): 
-
        515          """ Save the current status to a project file for future  
-516          information retrieval 
-517   
-518          Argument: 
-519          - savefilename  :   str, file name 
-520   
-521          Return          :   None 
-522          """ 
-523          import pickle 
-524   
-525          if savefilename is None: 
-526              savefilename = str(self._processid) 
-527          elif not isinstance(savefilename, str): 
-528              errmsg  = "Input File Name %-20s Is Not String\n"% (savefilename) 
-529              errmsg += "Input File Name is of Type %-20s\n"% (type(savefilename)) 
-530              errmsg += "Input File Name is of Class %-20s\n"% (savefilename.__class__.__name__) 
-531              print errmsg 
-532              raise FitConfigurationError(savefilename) 
-533   
-534          # Save file to a pickle file 
-535          pfile = open(savefilename, "w") 
-536          pickle.dump(self, pfile) 
-537          pfile.close() 
-538   
-539          return 
-
        540   
-541   
-
        542 -    def saveV2(self, savefilename=None): 
-
        543          """ Save the current status to a project file for future use 
-544   
-545          Version 2.0:  It will be implemented soon.  
-546   
-547          Argument: 
-548          - savefilename  :   str, file name  
-549   
-550          Return          :   None 
-551          """ 
-552          # FIXME - Multiple instrument refinement is not supported  
-553   
-554          # 1. Validity check 
-555          if savefilename is None: 
-556              savefilename = str(self._processid) 
-557          elif not isinstance(savefilename, str): 
-558              errmsg  = "Input File Name %-20s Is Not String\n"% (savefilename) 
-559              errmsg += "Input File Name is of Type %-20s\n"% (type(savefilename)) 
-560              errmsg += "Input File Name is of Class %-20s\n"% (savefilename.__class__.__name__) 
-561              raise FitConfigurationError, errmsg 
-562          else: 
-563              pass 
-564          # END-IF-ELSE 
-565   
-566          # 2. Save file to XML nodes 
-567          for mefit, refinedetail, stepinfotuple, varnameslist in self._fitsInfoList: 
-568   
-569              # 2.1 Rebuild instrument 
-570              if isSinglePatternType(mefit): 
-571                  # 2.1.1 
-572                  testpat = mefit.getComponent(0).getPattern() 
-573                  if isinstance(testpat, APIPattern.CWXPattern): 
-574                      instrument = IS.XrayInstrument() 
-575   
-576                  elif isinstance(testpat, APIPattern.CWNPattern): 
-577                      instrument = IS.NeutronCWInstrument() 
-578   
-579                  elif isinstance(testpat, APIPattern.ThermalNeutronPattern): 
-580                      instrument = IS.ThermalNeutronTOFInstrument() 
-581   
-582                  elif isinstance(testpat, APIPattern.TOFPattern): 
-583                      instrument = IS.TOFInstrument() 
-584   
-585                  else: 
-586                      errmsg = "Pattern Type %-10s Is Not Supported" % \ 
-587                              (testpat.__class__.__name__) 
-588                  # END-IF-ELSE 
-589              
-590                  # 2.2.2  
-591                  instrument.importFromFit(curfit) 
-592    
-593              else: 
-594                  errmsg = "Multiple Instrument is not supported" 
-595                  raise errmsg 
-596   
-597              # END-IF-ELSE 
-598   
-599          if gsasfname is None: 
-600              if insname.upper() == "POWGEN":  
-601                  instrument = INS.ThermalNeutronTOFInstrument(name="POWGEN") 
-602                  instrument.importFromFit(curfit) 
-603                  xmlgen = XMLG.ThermalNeutronTOFXMLGenerator(instrument, True) 
-604              elif insname.upper() == "GEM": 
-605                  instrument = INS.TOFInstrument(name="GEM") 
-606                  instrument.importFromFit(curfit) 
-607                  xmlgen = XMLG.TOFXMLGenerator(instrument, True) 
-608              elif insname.upper() == "NPDF": 
-609                  instrument = INS.TOFInstrument(name="NPDF") 
-610                  instrument.importFromFit(curfit) 
-611                  xmlgen = XMLG.TOFXMLGenerator(instrument, True) 
-612              elif insname.upper() == "RAPDF": 
-613                  instrument = INS.XrayInstrument(name="RAPDF") 
-614                  instrument.importFromFit(curfit) 
-615                  xmlgen = XMLG.XrayInstrumentXMLGenerator(instrument, True) 
-616              else: 
-617                  errmsg = "Instrument Name Must Be Given!  Only POWGEN and RAPDF are supported now!" 
-618                  print errmsg 
-619                  import sys 
-620                  sys.exit(0)  
-621   
-622          return 
-
        623   
-624   
-
        625 -    def recordSolution(self, stepinfotuple, refinedetail, varnameslist): 
-
        626          """ 
-627          record the solution of specific refinement result 
-628          in a certain (outloop-step, permutation-sequence, inner-loop-step) combination 
-629   
-630          The records will be used for further examination 
-631   
-632          Status      :   Concept 
-633          Type        :   Advanced 1 
-634   
-635          Arguement: 
-636          - indicieslist  :   list of integers as indicies or str ("dry") 
-637          - stepinfotuple :   3-tuple of integers as refinement indicies or str ("dry") 
-638                              tuple will be  
-639                              (strategy-step, guide-step, guideindex) 
-640          - refinedetail  :   RefineDetail instance 
-641          - varnameslist  :   list of variables to be refined 
-642   
-643          Return          :   None 
-644          """ 
-645          import copy 
-646   
-647          # Dry Run?  
-648          if stepinfotuple == "dry": 
-649              dryrun = True 
-650          else: 
-651              dryrun = False 
-652   
-653          # 1. make a copy of the Fit, and remove the pattern data 
-654          cpfit   = copy.deepcopy(self._currFit) 
-655          if _MEMCHECK is True: 
-656              import monitormem as MM 
-657              mem_mon = MM.MemoryMonitor() 
-658              mem_mon.register(cpfit) 
-659              mem_mon.register(cpfit._srfit) 
-660          # END-IF 
-661   
-662          if _DEBUG01:   # 1436 
-663              parlist = self._currFit.getRefinedParametersList() 
-664              print "1436 No. of Parameter Refined = %-5s" %  (len(parlist)) 
-665              for rietobj, parname in parlist: 
-666                  parval = rietobj.getValue(parname) 
-667                  parsig = rietobj.getUncertainty(parname) 
-668                  print "%-15s = %-15s +/- %-15s"% (parname, parval, parsig) 
-669          # END-DEBUG 
-670   
-671          # 2. data file are unloaded 
-672          # Note: This stpe is deleted because it may cause exception for plotting data 
-673          # FIXME TISSOT-6 Will fix this part, since copy on diffraction data is waste of space 
-674          #       The elegant solution should be if the store Fit is called for plotting 
-675          #       Calculate the pattern on fly! 
-676          if 0: 
-677              if dryrun is False: 
-678                  rietnum = cpfit.getNumComponents() 
-679                  for cindex in xrange(rietnum): 
-680                      component = cpfit.getComponent(cindex) 
-681                      pattern   = component.getPattern() 
-682                      pattern.unloadData() 
-683   
-684          # 3. make step information tuple  
-685          if dryrun is True: 
-686              stepinfotupe = (0, 0, 0) 
-687          
-688          # 3. put the result to a dictionary; update currStep 
-689          self._fitsInfoList.append((cpfit, refinedetail, stepinfotuple, varnameslist)) 
-690          self._currStep = len(self._fitsInfoList)-1 
-691   
-692          return 
-
        693   
-694      # END-DEF recordSolution(self, stepinfotuple, refinedetail, varnameslist) 
-695   
-696   
-
        697 -    def getHistory(self): 
-
        698          """ 
-699          Provide clients with a concise and informative history for refinement 
-700   
-701          Return  :   RefineHistory instance 
-702          """ 
-703          return self._refhistory 
-
        704   
-705   
-
        706 -    def leapBack(self, backstep): 
-
        707          """ 
-708          Roll multiple step refinement back for a certain of steps,  
-709          i.e., copy the Fit instance from that step to the current Fit instance 
-710   
-711          Arugment: 
-712          - backstep  :   int, how many steps to roll back 
-713   
-714          Return      :   4-tuple of list  
-715                          1. prevRefinedVariablesList,  
-716                          2. currefinedvartupleslist 
-717                          3. list, guideslist 
-718                          4. int,  current step list 
-719          """ 
-720          import copy 
-721          PP = myEngine.getRietveldEngineModule("patternparsers") 
-722   
-723          # 0. Record and Adjust backstep 
-724          oastep = len(self._fitsInfoList) 
-725          self._skipStepsList.append(oastep) 
-726          stop = False 
-727          while stop is False: 
-728              prevstep = oastep-backstep 
-729              if self._skipStepsList.count(prevstep) >= 1: 
-730                  backstep = backstep+1 
-731              else: 
-732                  stop = True 
-733   
-734          # 1. Reset current Fit and reload data for the copied Fit instance 
-735          currnumstep = len(self._fitsInfoList) 
-736          currefstep  = (currnumstep-1)-backstep 
-737          try: 
-738              recordfit, rd, infotuple, vl = self._fitsInfoList[currefstep] 
-739          except IndexError, err: 
-740              errmsg  = "Length _fitsInfoList = %-5s,  backstep = %-5s, out-of-bound curr-step = %-5s"% \ 
-741                  (currnumstep, backstep, currefstep) 
-742              errmsg += "\n%-60s"% (err) 
-743              print errmsg 
-744              raise IndexError(errmsg) 
-745          discontfit = self._currFit 
-746          self._currFit  = copy.deepcopy(recordfit) 
-747          self._currStep = currefstep  
-748   
-749          if _MEMCHECK is True: 
-750              import monitormem as MM 
-751              mem_mon = MM.MemoryMonitor() 
-752              mem_mon.register(self._currFit) 
-753              mem_mon.register(self._currFit._srfit) 
-754          # END-IF 
-755   
-756          # FIXME:  TISSOT-6  This part will be used again after elegant solution is made 
-757          if 0: 
-758              rietnum = self._currFit.getNumComponents() 
-759              for cindex in xrange(rietnum): 
-760                  component = self._currFit.getComponent(cindex) 
-761                  discomponent = discontfit.getComponent(cindex) 
-762                  pattern   = component.getPattern() 
-763                  dispattern   = discomponent.getPattern() 
-764                  datafilename = dispattern.getDataFileName() 
-765                  pattern.loadData(datafilename, PP.XYSigmaParser()) 
-766   
-767          if _DEBUG is True:   # 1243 
-768              print "Refine Manager Leap Back Information" 
-769              try: 
-770                  msg = "Last Refine Step = %-5s  %-30s\n"% \ 
-771                      (currnumstep-1, self._fitsInfoList[currnumstep-1][1]) 
-772              except KeyError, err: 
-773                  msg = "Last Refine Step = %-5s  %-30s\n"% \ 
-774                      (currnumstep-1, "NaN") 
-775              msg += "       Back Refine Step = %-5s  %-30s"% \ 
-776                  (currefstep, self._fitsInfoList[currefstep][1]) 
-777              print msg 
-778   
-779          # 2. get the index from record and get the refine variables 
-780          prevRefinedVariablesList, prevrefinetype = self.getPrevStepRefinedVariables((currnumstep-1)-backstep) 
-781          # the extra -1 is due to the inconsistence of over-all step and refine-step 
-782   
-783          # 3. Reset the current Guides-List 
-784          currstrategystep = infotuple[0] 
-785          prevstrategystep = self._fitsInfoList[-1][2][0] 
-786   
-787          # 3.1 If no previos step to go, then quit 
-788          # FIXME - Should come up a better solution with failed refinement 
-789          if not isinstance(currstrategystep, int): 
-790              msg = "Leap back to the very beginning of the refinement (step = %-5s) \n" % \ 
-791                      currstrategystep 
-792              msg += "Sequential Fitting Quit! Without Saving.  Message 1807" 
-793              print msg 
-794              import sys 
-795              sys.exit(0) 
-796          
-797          # 3.2 Reset 
-798          guideslist = self._refinestrategy.getRefineGuidesOfStep(currstrategystep) 
-799          for rguide, stage in guideslist: 
-800              numrefinesteps = rguide.getGuideConfig(self._currFit, stage) 
-801   
-802          # 4. The refined parameters  
-803          if _DEBUG is True:   # 1556 
-804              parlist = self._currFit.getRefinedParametersList() 
-805              print "1556-3 No. of Parameter Refined = %-5s"% (len(parlist)) 
-806              print "Recorded Fit @ %-15s"% (self._currFit.__repr__()) 
-807              for rietobj, parname in parlist: 
-808                  parval = rietobj.getValue(parname) 
-809                  parsig = rietobj.getUncertainty(parname) 
-810                  print "%-15s = %-15s +/- %-15s"% (parname, parval, parsig) 
-811          # END-DEBUG 
-812   
-813          return ( (prevRefinedVariablesList, prevrefinetype, guideslist, currefstep) ) 
-
        814       
-815      # END DEF leapBack(self, backstep) 
-816   
-817  # END of Class CentralControl 
-818   
-819   
-
        820 -def getProcessID(): 
-
        821      """ Get a number according to time 
-822   
-823      Return  :   str, as ID 
-824      """ 
-825      import time 
-826   
-827      ttup = time.gmtime() 
-828      ts = "" 
-829      for i in xrange(6): 
-830          ts += str(ttup[i]) 
-831   
-832      return ts 
-
        833   
-834   
-
        835 -def loadMultiStepRefinements(picklefname): 
-
        836      """ 
-837      Open a pickle file and load a MultiStepRefinementManager  
-838   
-839      Arguments: 
-840      - picklefname:  string, pickle file name 
-841   
-842      Return      :   MultiStepRefinementManager instance 
-843   
-844      Exception   : 
-845      - Pickle file error 
-846      - Loaded object is not MultiStepRefinementManager 
-847      """ 
-848      import pickle 
-849   
-850      # 1. Check File and Object and Import 
-851      try: 
-852          ifile = open(picklefname) 
-853          msobj = pickle.load(ifile) 
-854          ifile.close() 
-855      except IOError, err: 
-856          errmsg = "Error Reading File %-10s"% (picklefname) 
-857          raise IOError(err) 
-858      except pickle.PicklingError, err: 
-859          errmsg = "PickleError on File %-10s"% (picklefname) 
-860          raise PicklingError(errmsg) 
-861   
-862      if not isinstance(msobj, MultiStepRefineManager): 
-863          errmsg = "Import Class Incorrect, Should be MultiStepRefinement, But Imported Is %-20s"% \ 
-864              (msobj.__class__.__name__) 
-865          raise FitConfigurationError 
-866   
-867      # 2. return 
-868      return msobj             
-
        869   
-870   
-
        871 -def isSinglePatternType(myfit): 
-
        872      """ To find out whether a Fit instance is composed of single type of Pattern 
-873   
-874      Argument: 
-875      - myfit :   Fit 
-876   
-877      Return  :   boolean 
-878      """ 
-879      complist = myfit.getComponentByMeasurement() 
-880      patterntype = complist[0].getPattern().__class__.__name__ 
-881      
-882      issingle = True 
-883      for cindex in xrange(1, len(complist)): 
-884          newpatterntype = complist[cindex].getPattern().__class__.__name__ 
-885          if patterntype != newpatterntype: 
-886              issingle = False 
-887              break 
-888      # LOOP-OVER 
-889   
-890      return issingle 
-
        891   
-
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        - -

        Class MultiStepRefineManager

        source code

        -
        -
-Class to realize central controling on multiple step refinement
-on a single structure refinement may covering from
-Le-Bail (peak profile matching) and Rietveld Refinement
-
-This class is designed towards automatic refinement
-
-Scenario to Use:
-> mm = MultiStepRefineManager(myfit)
-> mm.refine(POWGENRefineControl())
-> mm.showResult()
-> ... ...
-
-Class Variable:
-_stepsize:          integer for multiple step refinement, 1<=stepsize
-_rgpool:            dictionary of list of RefineGuides:  RefineGuidePool = rgpool
-                    like 2-D array (matrix)
-                    rgpool[i][j]:   i -> refine at i-th step
-                                    j -> all RefineGuides at i-th step will be refined in all permutated sequence
-_currFit :          current Fit instance
-_currStep           current step for current Fit 
-_curGuidesList:     current RefineGuides list (no sequence)
-_fitsInfoList:      list of 4-tuples including:
-                    1. Fit instance
-                    2. Refine-Detail instance
-                    3. 3-tuple as Step-information
-                    4. Variable Names List
-_skipStepsList:     list of int for steps that are skipped because of bad refinement
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - myfit)
        - Initialization...        		 - source code - -
        - -
        -   - - - - - - -
        getRefineStrategy(self)
        - Give the refine strategy used now        		 - source code - -
        - -
        -   - - - - - - -
        getCurrentFit(self)
        - Provide the handler to the current Fit instance        		 - source code - -
        - -
        -   - - - - - - -
        refine(self, - refinestrategy, - weightscheme='standard')
        - Multiple-step refinement on starting Fitting configuration according to input -refinement strategy - -Automatic refinement will be based on some heuristic 'refinement strategy' -coupled with some algorithm with automatic judgement - -Status : coded -Type : basic - -Assumption: -1.        		 - source code - -
        - -
        -   - - - - - - -
        getBestStep(self)
        - Get the best step according to Rwp        		 - source code - -
        - -
        -   - - - - - - -
        getNumSteps(self)
        - Get the number of total refinement steps in this multiple step - fit        		 - source code - -
        - -
        -   - - - - - - -
        getFitOfStep(self, - step)
        - Get the Fit object as the result after a specific step...        		 - source code - -
        - -
        -   - - - - - - -
        getFitDetailOfStep(self, - step)
        - Get the Fit object as the result after a specific step...        		 - source code - -
        - -
        -   - - - - - - -
        getPrevStepRefinedVariables(self, - thestep)
        - Get the refined variables refined in the previous refine steps -in a certain Refine-Strategy -The step here means the over-all step number - -The drawback is that at each refinement step, -the previously refined parameters/variables will have to be reviewed -in case the change of self._currFit, -such that the speed of the program may be affected.        		 - source code - -
        - -
        -   - - - - - - -
        save(self, - savefilename=None)
        - Save the current status to a project file for future ...        		 - source code - -
        - -
        -   - - - - - - -
        saveV2(self, - savefilename=None)
        - Save the current status to a project file for future use - -Version 2.0: It will be implemented soon.        		 - source code - -
        - -
        -   - - - - - - -
        recordSolution(self, - stepinfotuple, - refinedetail, - varnameslist)
        - record the solution of specific refinement result...        		 - source code - -
        - -
        -   - - - - - - -
        getHistory(self)
        - Provide clients with a concise and informative history for - refinement        		 - source code - -
        - -
        -   - - - - - - -
        leapBack(self, - backstep)
        - Roll multiple step refinement back for a certain of steps, -i.e., copy the Fit instance from that step to the current Fit instance - -Arugment: -- backstep : int, how many steps to roll back - -Return : 4-tuple of list - 1.        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - myfit) -
        (Constructor) -

        -         		source code  -
        - - 
        -Initialization
-
-Arguement:
-- myfit :   Fit instance
-
-Return  :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getCurrentFit(self) -

        -         		source code  -
        - -

        Provide the handler to the current Fit instance

        - Return : Fit instance -
        -
        -
        -
        - -
        - -
        - - -
        -

        refine(self, - refinestrategy, - weightscheme='standard') -

        -         		source code  -
        - - 
        -
-Multiple-step refinement on starting Fitting configuration according to input 
-refinement strategy
-
-Automatic refinement will be based on some heuristic 'refinement strategy'
-coupled with some algorithm with automatic judgement
-
-Status  :   coded
-Type    :   basic
-
-Assumption:
-1. In each Refine-Guide-Step, NO Rietveld object will be removed or replaced
-2. In different Refine-Guide-Steps, Rietveld object may be removed or replaced
-
-Argument
-- refinestrategy    :   RefineStrategy object
-- weightscheme      :   str, refining weighting scheme, {standard, unit-weight}
-
-Return              :   2-tuple:  RefineDetail, str (process ID)
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getBestStep(self) -

        -         		source code  -
        - -

        Get the best step according to Rwp

        - Return : int -
        -
        -
        -
        - -
        - -
        - - -
        -

        getNumSteps(self) -

        -         		source code  -
        - -

        Get the number of total refinement steps in this multiple step fit

        - Return : int -
        -
        -
        -
        - -
        - -
        - - -
        -

        getFitOfStep(self, - step) -

        -         		source code  -
        - - 
        -
-Get the Fit object as the result after a specific step
-
-Arguments:
-- step  :   int, 
-
-Return  :   Fit instance
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getFitDetailOfStep(self, - step) -

        -         		source code  -
        - - 
        -
-Get the Fit object as the result after a specific step
-
-Arguments:
-- step  :   int, 
-
-Return  :   Fit instance
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getPrevStepRefinedVariables(self, - thestep) -

        -         		source code  -
        - - 
        -
-Get the refined variables refined in the previous refine steps
-in a certain Refine-Strategy
-The step here means the over-all step number
-
-The drawback is that at each refinement step, 
-the previously refined parameters/variables will have to be reviewed
-in case the change of self._currFit,
-such that the speed of the program may be affected. 
-But in all senses, comparing to refinement, this kind of review won't
-be significant. 
-
-Because it is possible that Rietveld objects in Curr-Fit instance
-are replaced or changed due to some strategy/algorithm,
-the variables should be re-guided
-
-Level           :   Basic
-Coding          :   Finished
-
-Argument:
-- thestep       :   int, step number, such that any step prior to this one, 
-                    including this one will be set up
-
-Return          :   2-tuple, 
-                    1.  list of 3-tuples as 
-                    (constraint/variable-name, Rietveld object, parameter-name)
-                    2.  str: previous-refine type
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        save(self, - savefilename=None) -

        -         		source code  -
        - - 
        -Save the current status to a project file for future 
-information retrieval
-
-Argument:
-- savefilename  :   str, file name
-
-Return          :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        saveV2(self, - savefilename=None) -

        -         		source code  -
        - - 
        -Save the current status to a project file for future use
-
-Version 2.0:  It will be implemented soon. 
-
-Argument:
-- savefilename  :   str, file name 
-
-Return          :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        recordSolution(self, - stepinfotuple, - refinedetail, - varnameslist) -

        -         		source code  -
        - - 
        -
-record the solution of specific refinement result
-in a certain (outloop-step, permutation-sequence, inner-loop-step) combination
-
-The records will be used for further examination
-
-Status      :   Concept
-Type        :   Advanced 1
-
-Arguement:
-- indicieslist  :   list of integers as indicies or str ("dry")
-- stepinfotuple :   3-tuple of integers as refinement indicies or str ("dry")
-                    tuple will be 
-                    (strategy-step, guide-step, guideindex)
-- refinedetail  :   RefineDetail instance
-- varnameslist  :   list of variables to be refined
-
-Return          :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getHistory(self) -

        -         		source code  -
        - -

        Provide clients with a concise and informative history for - refinement

        - Return : RefineHistory instance -
        -
        -
        -
        - -
        - -
        - - -
        -

        leapBack(self, - backstep) -

        -         		source code  -
        - - 
        -
-Roll multiple step refinement back for a certain of steps, 
-i.e., copy the Fit instance from that step to the current Fit instance
-
-Arugment:
-- backstep  :   int, how many steps to roll back
-
-Return      :   4-tuple of list 
-                1. prevRefinedVariablesList, 
-                2. currefinedvartupleslist
-                3. list, guideslist
-                4. int,  current step list
-
-
        -
        -
        -
        -
        -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinesetup-module.html b/static_root/doc/srrietveld/developers/srrietveld.refinesetup-module.html deleted file mode 100644 index 72affefa..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinesetup-module.html +++ /dev/null @@ -1,390 +0,0 @@ - - - - - srrietveld.refinesetup - - - - - - - - - - - - - - - - - - - - - - -
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        - -

        Module refinesetup

        source code

        -

        RefineSetup is to set up the refienemnt flag, constraint on one or - several related Rietveld objects

        - Created On : 2009.03.05

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Classes[hide private]
        -
        -   - - RefineSetup
        - Guide and set up the Rietveld/Le-Bail refinement on -(1) a single or -(2) several related -diffpy.rietveldapi objects, such as Pattern, Phase, Atom - -Each RefineSetup instance should be used to guide the refinement -of one and only one diffpy.rietveldapi objects. -
        -   - - AbsorptionCorrectionRefineSetup
        - Refinement setup for TOF absorption correction -
        -   - - AtomFractionalCoordinateRefineSetup
        - Refine set up for atom's fractional corridnates -
        -   - - IsotropicADPRefineSetup
        - Refine set up for Isotropic atomic displacement factor -
        -   - - AnisotropicADPRefineSetup
        - Refine set up for anisotropic atomic displacement -
        -   - - OccRefineSetup
        - Refine set up for Atom's occupancy -
        -   - - InterpolatedBackgroundRefineSetup
        - Refine setup for interploated background -
        -   - - PolynomialBackgroundRefineSetup
        - refine setup for Polynomial background -
        -   - - TOFExpDecayRefineSetup
        - Refinement setup for T.O.F. -
        -   - - LatticeRefineSetup
        - class to set up single Lattice to refine -
        -   - - CubicRefineSetup
        - class to set up single Lattice to refine Cubic P, F, I - Four 3-folds along space diagonal a, a, ,a, 90, 90, 90 -
        -   - - HexagonalRefineSetup
        - class to set up single Lattice to refine Hexagonal P - One 6-fold axis a, a, c, 90, 90, 120 -
        -   - - OrthorhombicRefineSetup
        - class to set up single Lattice to refine Orthorhombic - P, C One 2-fold axis, parallel b (b unique) a, b, c, 90, - 90, 90 -
        -   - - TetragonalRefineSetup
        - class to set up single Lattice to refine Orthorhombic - P, C One 2-fold axis, parallel b (b unique) a, b, c, 90, - 90, 90 -
        -   - - MonoclinicRefineSetup
        - class to set up single Lattice to refine Monoclinic P, C - One 2-fold axis, parallel b (b unique) a, b, c, 90, be, 90 -
        -   - - TrigonalRefineSetup
        - class to set up single Lattice to refine... -
        -   - - ConstantWaveSymmetricPeakShapeRefineSetup
        - Refinement setup for symmetric peak shape of constant wave peak - profile, -
        -   - - RegularPseudoVoigtRefineSetup
        - Refinement setup for symmetric peak shape of constant wave peak profile, -including -1. -
        -   - - SplitPseudoVoigRefineSetup
        - Refinement setup for split pseudo-voigt peak profile -
        -   - - TCHPseudoVoigtRefineSetup
        - Refinement setup for Thomas-Cox-H Pseudo-Voigt peak profile -
        -   - - TOFPseudoVoigtRefinement
        - Refinement setup for T.O.F. -
        -   - - PseudoVoigtExpDSpacingRefineSetup
        - Refinement setup for PseudoVoigt Expoenetial D-Spacing Peak - profile -
        -   - - ScaleFactorRefineSetup
        - Refine set up for scale-factor -
        -   - - WavelengthRefineSetup
        - Refinement set up for Zero-shift... -
        -   - - ZeroShiftRefineSetup
        - Refinement set up for Zero-shift... -
        -   - - ZeroShiftThermoRefineSetup
        - Refinement set up for Zero-shift on a Thermo-neutron instrument... -
        - - - - - - - - - - - - - - - -
        - - - - - -
        Variables[hide private]
        -
        -   - - __id__ = '$Id: refinesetup.py 2918 2009-03-18 19:26:39Z wdzhou $' -
        -   - - _DEBUG_ARG = False -
        -   - - _DEBUG = False -
        - - - - - - - - - - - - - - - - - -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinesetup-pysrc.html b/static_root/doc/srrietveld/developers/srrietveld.refinesetup-pysrc.html deleted file mode 100644 index 94cbb600..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinesetup-pysrc.html +++ /dev/null @@ -1,1846 +0,0 @@ - - - - - srrietveld.refinesetup - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
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        - - Package srrietveld :: - Module refinesetup - - - - - - -
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        Source Code for Module srrietveld.refinesetup

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2008 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Wenduo Zhou 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14   
- 15  """ RefineSetup is to set up the refienemnt flag, constraint on 
- 16  one or several related Rietveld objects 
- 17   
- 18  Created On  :   2009.03.05 
- 19  """ 
- 20   
- 21  __id__ = "$Id: refinesetup.py 2918 2009-03-18 19:26:39Z wdzhou $" 
- 22   
- 23  from diffpy.refinementapi.errors import FitConfigurationError 
- 24  from diffpy.refinementapi.exceptiontools import verifyType 
- 25  import utilrefineguide as UR 
- 26   
- 27  _DEBUG_ARG = False 
- 28  _DEBUG = False 
- 29   
-
         30 -class RefineSetup: 
-
         31      """ Guide and set up the Rietveld/Le-Bail refinement on  
- 32      (1) a single or 
- 33      (2) several related 
- 34      diffpy.rietveldapi objects, such as Pattern, Phase, Atom 
- 35   
- 36      Each RefineSetup instance should be used to guide the refinement  
- 37      of one and only one diffpy.rietveldapi objects.  
- 38      If a mismatch occurs, EXCEPTION will be thrown 
- 39   
- 40      RefineSetup serves as an INTERFACE (Virtual) 
- 41   
- 42      Class Variable: 
- 43      _NumPar :   Number of parameters to refine   
- 44                  If == None:  Unavailable to turn on parameters in sequence 
- 45      _myFit  :   diffpy.rietveldapi.Fit instance 
- 46      _myRietObjsList: list, of list, of Rietveld objects 
- 47   
- 48      Class Methods: 
- 49      1. setToRefine(fit, rietobj, varindexlist):  set the parameters in  
- 50      1. getRefineInfo(fit, rietobj, varindexlist):  set the parameters in  
- 51      """ 
-
         52 -    def __init__(self, fit, rietobjslist, refinestage=1): 
-
         53          """ initialization 
- 54   
- 55          Argument:    
- 56          - fit               :   Fit instance 
- 57          - rietobjectslist   :   list, of list, of Rietveld objects 
- 58                                  [ [main-object, help, ..], [main-object, help, ..], ...] 
- 59          - refinestage       :   int,  
- 60          """ 
- 61          import diffpy.rietveldapi.Fit as FitAPI 
- 62   
- 63          if _DEBUG_ARG is True: 
- 64              print "RefineSetup:  %-20s" % (self.__class__.__name__) 
- 65              for rietobjs in rietobjslist: 
- 66                  print rietobjs 
- 67          # END-IF 
- 68   
- 69          # 1. Virtual base class 
- 70          if self.__class__.__name__ == "RefineSetup": 
- 71              errmsg = "RietRefineSetup is Virtual;  Cannot be initialized" 
- 72              raise NotImplementedError(errmsg) 
- 73          else: 
- 74              self._myFit = fit 
- 75              self._myRietObjsList = rietobjslist 
- 76          # END-IF-ELSE 
- 77   
- 78          # 2. check: fit and rietobjslist 
- 79          verifyType(fit, FitAPI.Fit) 
- 80          if not isinstance(rietobjslist, list): 
- 81              errmsg = "Input Rietveld Objects List Is Not List" 
- 82              raise FitConfigurationError, errmsg 
- 83          # END-IF 
- 84   
- 85          validinput = True 
- 86          if isinstance(rietobjslist, list): 
- 87              for rietobjs in rietobjslist: 
- 88                  if not isinstance(rietobjs, list): 
- 89                      validinput = False 
- 90                      break 
- 91              # LOOP-OVER 
- 92          else: 
- 93              validinput = False 
- 94           
- 95          if validinput is False: 
- 96              errmsg = "rietobjslist is not list of list of Rietveld objects " + \ 
- 97                      "%-30s" % (rietobjslist) 
- 98              raise NotImplementedError, errmsg 
- 99          # END-IF 
-100   
-101          # 3. Figure out number of steps to refine 
-102          self._NumSteps = 0 
-103          for step in sorted( self.VarSetupDict.keys() ): 
-104              refinethisstage = False 
-105              for varname, parnameslist, stage in self.VarSetupDict[step]: 
-106                  if _DEBUG_ARG is True: 
-107                      print "420RS:  stage-in-dict = %-5s  stage-input = %-5s" % (stage, refinestage) 
-108                  if stage == refinestage: 
-109                      refinethisstage = True 
-110                      break 
-111              # LOOP-OVER 
-112              if refinethisstage is True: 
-113                  self._NumSteps += 1 
-114          # LOOP-OVER 
-115   
-116          return 
-
        117   
-118   
-
        119 -    def getNumRefineSteps(self, stage=1): 
-
        120          """ 
-121          give the number of steps to refine by this unit refine guide/setup 
-122   
-123          Return  :   integer, number of steps 
-124          """ 
-125          return self._NumSteps 
-
        126   
-127   
-
        128 -    def getNumParameters(self): 
-
        129          """ 
-130          show number of parameters to refine 
-131          """ 
-132          raise NotImplementedError("Not a clear definition why uses this function") 
-133          return self._NumPar 
-
        134   
-135   
-
        136 -    def setToRefine(self, rietobjslist, varindexlist, stage, step, dry=False): 
-
        137          """ 
-138          set a rietveld object to refine mode at a specific STEP 
-139   
-140          Arguements: 
-141          - rietobjslist  :   list, diffpy.rietveldapi class instance 
-142          - varindexlist  :   list of integer for variable index 
-143          - step          :   integer/str, used to denote step number for parameters  
-144                              to refine in multiple steps, such that 
-145                              1. there are more than one parameters to refine in this guide 
-146                              2. users requires them to refine in different step 
-147                              3. default ("all") will take all parameters on in same step 
-148          - stage         :   int, stage to refine this group of parameters 
-149          - dry           :   boolean.  if true, just return, but no mapVP() 
-150   
-151          Return          :   list, each entry is a 3-tuple (constraint, rietobj, parameter-name) 
-152          """ 
-153          # 1. Get refinement information  
-154          refineinfotuplist = self.getRefineInfo(rietobjslist, varindexlist, step, stage) 
-155   
-156          # 2. Set to refine 
-157          if dry is False: 
-158              for infotup in refineinfotuplist: 
-159                  varname, rietobj, parname = infotup 
-160                  self._myFit.mapVP(varname, rietobj, parname) 
-161          else: 
-162              pass 
-163   
-164          return refineinfotuplist 
-
        165   
-166   
-
        167 -    def getRefineInfo(self, rietobjslist, varindexlist, refinestep, refinestage=1): 
-
        168          """ 
-169          Gather the refinement information, including 
-170          the parameter name, varaible name, and Rietveld objects 
-171          for set up to refine 
-172   
-173          Virtual 
-174   
-175          Argument: 
-176          - rietobjslist  :   list of list of diffpy.rietveldapi class instance 
-177          - varindexlist  :   list of integer for variable index 
-178          - refinestep          :   integer/str, used to denote step number for parameters to refine  
-179                              in multiple steps, such that 
-180                              1. there are more than one parameters to refine in this guide 
-181                              2. users requires them to refine in different step 
-182                              3. default ("all") will take all parameters on in same step 
-183   
-184          Return          :   list, each entry is a 3-tuple (constraint, rietobj, parameter-name) 
-185          """ 
-186          # 1. Check: no mismatch of _myRietObj occurs 
-187          if not rietobjslist == self._myRietObjsList: 
-188              # 1. Detailed output 
-189              errstr = "Input: \n" 
-190              for rietobj in rietobjslist: 
-191                  errstr += "%-60s\n" % (rietobj.__class__.__name__) 
-192              errstr += "Self-Stored: \n" 
-193              for rietobj in self._myRietObjsList: 
-194                  errstr += "%-60s\n" % (rietobj.__class__.__name__) 
-195              print errstr 
-196   
-197              # 2. Raise exception 
-198              errmsg  = "Mismatch is found for self._myRietObjsList\n" 
-199              errmsg += "Input RietObj is %-10s at %-10s\n"% \ 
-200                  ( rietobjslist.__class__.__name__, rietobjslist.__repr__() ) 
-201              errmsg += "self  RietObj is %-10s at %-10s"% \ 
-202                  ( self._myRietObjsList.__class__.__name__, self._myRietObjsList.__repr__() ) 
-203              raise FitConfigurationError(errmsg)      
-204          else: 
-205              if _DEBUG is True: 
-206                  print "258A:  ", self._myRietObjsList 
-207          # END-IF 
-208           
-209          # 2. Generate a list of steps to refine 
-210          if refinestep == "all": 
-211              stepslist = self.VarSetupDict.keys() 
-212          else: 
-213              stepslist = [refinestep] 
-214          # END-IF-ELSE 
-215   
-216          # 2. Create parameter-variable list 
-217          rlist = [] 
-218          for step in stepslist: 
-219              for varnameraw, parnamelist, stage in self.VarSetupDict[step]: 
-220                  # 2.1 Validation 
-221                  if not isinstance(parnamelist, list): 
-222                      errmsg = "Class %-10s VarSetupDict Is Not Defined Correctly" % \ 
-223                              self.__class__.__name__ 
-224                      raise NotImplementedError, errmsg 
-225   
-226                  if stage == refinestage: 
-227                      # 1. Get Variable Name 
-228                      varname = UR.genVarName(varnameraw, varindexlist) 
-229   
-230                      # 2. Set up to each Rietveld object 
-231                      for rietobjs in rietobjslist: 
-232                          rietobj = rietobjs[0] 
-233                          for parname in parnamelist: 
-234                              rlist.append( (varname, rietobj, parname) ) 
-235                          # LOOP-OVER 
-236                      # LOOP-0VER 
-237                  # END-IF 
-238              # LOOP-OVER  for varnameraw in self.VarSetupDict.keys() 
-239          # LOOP-OVER:   for step in stepslist 
-240   
-241          return rlist    
-
        242   
-243  # END [class RietRefineSetup] 
-244   
-245   
-
        246 -class AbsorptionCorrectionRefineSetup(RefineSetup): 
-
        247      """ Refinement setup for TOF absorption correction 
-248      """ 
-249      VarSetupDict = { 
-250              1: [ ("abs1", "abs1", 1) ], 
-251              2: [ ("abs2", "abs2", 1) ], 
-252              } 
-
        253   
-254  # END-DEF-CLASS AbsorptionCorrectionRefineSetup 
-255   
-256   
-
        257 -class AtomFractionalCoordinateRefineSetup(RefineSetup): 
-
        258      """ Refine set up for atom's fractional corridnates 
-259      """ 
-260      # FIXME  Special position cannot be refined.  The Rietveld engine (Fullprof) will handle this  
-261      VarSetupDict = { 
-262              1: [ ("x", ["x"], 1) ], 
-263              2: [ ("y", ["y"], 1) ], 
-264              3: [ ("z", ["z"], 1) ], 
-265              } 
-
        266   
-267  # END-DEF-Class AtomFractionalCoordinateRefineSetup 
-268   
-269   
-
        270 -class IsotropicADPRefineSetup(RefineSetup): 
-
        271      """ Refine set up for Isotropic atomic displacement 
-272      factor 
-273      """ 
-274      VarSetupDict = { 
-275              1: [ ("Biso", ["Biso"], 1) ], 
-276              } 
-
        277   
-278  # END-DEF-CLASS IsotropicADPRefineSetup 
-279   
-280   
-
        281 -class AnisotropicADPRefineSetup(RefineSetup): 
-
        282      """ Refine set up for anisotropic atomic displacement 
-283      """ 
-284      VarSetupDict = { 
-285              1: [ ("B11", ["B11"], 1) ], 
-286              2: [ ("B22", ["B22"], 1) ], 
-287              3: [ ("B33", ["B33"], 1) ], 
-288              4: [ ("B12", ["B12"], 1) ], 
-289              5: [ ("B13", ["B13"], 1) ], 
-290              6: [ ("B23", ["B23"], 1) ], 
-291              } 
-
        292   
-293  # END-DEF-CLASS AnisotropicADPRefineSetup 
-294   
-
        295 -class OccRefineSetup(RefineSetup): 
-
        296      """ Refine set up for Atom's occupancy 
-297      """ 
-298      # FIXME - In current data structure of phase, it is not  
-299      #         convenient to cluster the atoms on the same position 
-300      #         And how to pass (1.0 - occ) at RefinementAPI is not 
-301      #         clear either 
-
        302 -    def __init__(self, myfit, rietobjectslist): 
-
        303          """ Initialization 
-304          """ 
-305          errmsg = "Not Implemented!  Contact Developer!" 
-306          raise NotImplementedError, errmsg 
-
        307   
-308  # END-DEF-CLASS OccRefineSetup 
-309   
-310   
-
        311 -class InterpolatedBackgroundRefineSetup(RefineSetup): 
-
        312      """ Refine setup for interploated background 
-313      """ 
-314      _NumStages = 1 
-315   
-
        316 -    def __init__(self, fit, rietobjslist, refinestage = 1): 
-
        317          """ initialization 
-318   
-319          Argument:    
-320          - fit               :   Fit instance 
-321          - rietobjectslist   :   list, Rietveld objects 
-322          - refinestage       :   int,  
-323          """ 
-324          # 1. Input check for this specific  
-325          if len(rietobjslist) != 1: 
-326              errmsg = "%-15s assumes not constraints among two different " % \ 
-327                      (self.__class__.__name__) + "different Background instances" 
-328              raise FitConfigurationError, errmsg 
-329          else: 
-330              background, pattern = rietobjslist[0] 
-331          # END-IF-ELSE 
-332   
-333          # 2. Set up dynamic VarSetupDict 
-334          # 2. 1 Init 
-335          self.VarSetupDict = {} 
-336          self.VarSetupDict[1] = [] 
-337   
-338          # 2.2 Refine all background points not in excluded regions 
-339          thebackground = rietobjslist[0][0] 
-340          thepattern = rietobjslist[0][1] 
-341   
-342          numbkgdpoints = background.getNumBackgroundPoints() 
-343          for bindex in xrange(numbkgdpoints): 
-344              # a) check whether the background is in the fit range 
-345              inFitRange = True 
-346              for exclregion in thepattern.getExcludedRegion(): 
-347                  pos = thebackground.getBackgroundPoint(bindex)[0] 
-348                  if pos >= exclregion[0] and pos <= exclregion[1]: 
-349                      inFitRange = False 
-350                      break 
-351              # LOOP-OVER 
-352   
-353              # b) put to refine if in the range 
-354              if inFitRange is True: 
-355                  parname = "bkgdpoint"+str(bindex) 
-356                  varname = UR.genVarName("bkgd", [bindex]) 
-357                  self.VarSetupDict[1].append( (varname, [parname], refinestage) ) 
-358              # END-IF 
-359          # LOOP-OVER 
-360   
-361          # 2. Call base class 
-362          RefineSetup.__init__(self, fit, rietobjslist, refinestage) 
-363   
-364          return 
-
        365   
-366  # END-DEF-CLASS InterpolatedBackgroundRefineSetup 
-367   
-368   
-
        369 -class PolynomialBackgroundRefineSetup(RefineSetup): 
-
        370      """ refine setup for Polynomial background 
-371      """ 
-372      _NumStages = 2 
-373      _MaxOrder  = 6 
-374   
-
        375 -    def __init__(self, fit, rietobjslist, refinestage): 
-
        376          """ initialization 
-377   
-378          Argument:    
-379          - fit               :   Fit instance 
-380          - rietobjectslist   :   list, of list, of Rietveld objects 
-381          - refinestage       :   int,  
-382          """ 
-383          # 1. Determine the max polynomial order to refine 
-384          maxpolyorder = 1000 
-385          for rietobj in rietobjslist: 
-386              polyorder = rietobj[0].getOrder() 
-387              maxpolyorder = min(maxpolyorder, polyorder) 
-388          maxpolyorder = min(maxpolyorder, PolynomialBackgroundRefineSetup._MaxOrder) 
-389   
-390          # 2. Set up dynamic VarSetupDict 
-391          self.VarSetupDict = {} 
-392          if refinestage == 1: 
-393              bs = 1 
-394              be = 2 
-395          elif refinestage == 2: 
-396              bs = 1 
-397              be = maxpolyorder 
-398          else: 
-399              errmsg = "%-10s does not allow refine-stage = %-5s" % \ 
-400                      (self.__class__.__name__, refinestage) 
-401              raise FitConfigurationError, errmsg 
-402          # END-IF 
-403   
-404          for order in xrange(bs, be + 1): 
-405              self.VarSetupDict[order] = [] 
-406              parname = "b"+str(order) 
-407              varname = parname 
-408              self.VarSetupDict[order].append( (varname, [parname], refinestage) ) 
-409          # LOOP-OVER 
-410   
-411          if _DEBUG is True: 
-412              for order in sorted( self.VarSetupDict.keys() ): 
-413                  print self.VarSetupDict[order] 
-414              raise NotImplementedError, "3:00" 
-415   
-416          # 2. Call base class 
-417          RefineSetup.__init__(self, fit, rietobjslist, refinestage) 
-418   
-419          return 
-
        420       
-421  # END-DEF-CLASS: PolynomialBackgroundRefineSetup 
-422   
-423   
-
        424 -class TOFExpDecayRefineSetup(RefineSetup): 
-
        425      """ Refinement setup for T.O.F. PseudoVoigt peak profile's 
-426      exponential decay 
-427   
-428      Parameters including: alpha0, alpha1, beta0, beta1 
-429      """ 
-430      VarSetupDict = { 
-431              1: [ ("alpha0", ["alpha0"], 1) ], 
-432              2: [ ("alpha1", ["alpha1"], 1) ], 
-433              3: [ ("beta0", ["beta0"], 1) ], 
-434              4: [ ("beta1", ["beta1"], 1) ] 
-435              } 
-
        436   
-437  # END-DEF-CLASS TOFPseudoVoigtRefinement 
-438   
-439   
-
        440 -class LatticeRefineSetup(RefineSetup): 
-
        441      """ 
-442      class to set up single Lattice to refine 
-443   
-444      Virtual base class for all specific lattice:w 
-445      """ 
-
        446 -    def __init__(self, fit, rietobjslist): 
-
        447          """ initialization 
-448          """ 
-449          import diffpy.rietveldapi.Lattice as LatticeAPI 
-450   
-451          # 1. validate 
-452          for rietobjs in rietobjslist: 
-453              rietobj = rietobjs[0] 
-454              verifyType(rietobj, LatticeAPI.Lattice) 
-455           
-456          # 2. call base class 
-457          RefineSetup.__init__(self, fit, rietobjslist) 
-458   
-459          return 
-
        460   
-461   
-
        462 -    def getNumRefineSteps(self, stage=1): 
-
        463          """ give the number of steps to refine by this unit refine guide/setup 
-464   
-465          Argument     
-466          - stage :   int,  
-467   
-468          Return  :   integer, number of steps 
-469          """ 
-470          steps = self.VarSetupDict.keys() 
-471          numsteps = len(steps) 
-472           
-473          return numsteps 
-
        474   
-475  # END-DEF-CLASS LatticeRefineSetup 
-476   
-477   
-
        478 -class CubicRefineSetup(LatticeRefineSetup): 
-
        479      """ 
-480      class to set up single Lattice to refine 
-481      Cubic           P, F, I     Four 3-folds along space diagonal       a, a, ,a, 90, 90, 90 
-482   
-483      """ 
-484      _NumPar = 1 
-485      _NumSteps = 1 
-486   
-487      VarSetupDict = { 
-488          1:  [("abc",  ["a", "b", "c"], 1)], 
-489      } 
-
        490   
-491  # END [class CubicRefineSetup(LatticeRefineSetup)] 
-492   
-493   
-
        494 -class HexagonalRefineSetup(LatticeRefineSetup): 
-
        495      """ 
-496      class to set up single Lattice to refine 
-497      Hexagonal       P           One 6-fold axis                         a, a, c, 90, 90, 120 
-498      """ 
-499      _NumPar   = 2 
-500      _NumSteps = 1 
-501   
-502      VarSetupDict = { 
-503          1:  [("ab", ["a", "b"], 1)], 
-504          2:  [("c" , ["c"], 1)], 
-505      } 
-
        506   
-507   
-508  # END [class HexagonalRefineSetup(LatticeRefineSetup)] 
-509   
-510   
-
        511 -class OrthorhombicRefineSetup(LatticeRefineSetup): 
-
        512      """ 
-513      class to set up single Lattice to refine 
-514      Orthorhombic            P, C        One 2-fold axis, parallel b (b unique)  a, b, c, 90, 90, 90 
-515   
-516      Virtual base class 
-517      """ 
-518      _NumPar  = 3 
-519      _NumStep = 3 
-520   
-521      VarSetupDict = { 
-522          1:  [("a", ["a"], 1)], 
-523          2:  [("b", ["b"], 1)], 
-524          3:  [("c", ["c"], 1)], 
-525      }  
-
        526   
-527  # END [class MonoclinicRefineSetup(LatticeRefineSetup)] 
-528   
-529   
-
        530 -class TetragonalRefineSetup(LatticeRefineSetup): 
-
        531      """ 
-532      class to set up single Lattice to refine 
-533      Orthorhombic            P, C        One 2-fold axis, parallel b (b unique)  a, b, c, 90, 90, 90 
-534   
-535      Virtual base class 
-536      """ 
-537      _NumPar =   2 
-538      _NumSteps = 2 
-539   
-540      VarSetupDict = { 
-541          1:  [("ab", ["a", "b"], 1)], 
-542          2:  [("c", ["c"], 1)], 
-543      } 
-
        544   
-545  # END [class TetragonalRefineSetup(LatticeRefineSetup)] 
-546   
-547   
-
        548 -class MonoclinicRefineSetup(LatticeRefineSetup): 
-
        549      """ 
-550      class to set up single Lattice to refine 
-551      Monoclinic      P, C        One 2-fold axis, parallel b (b unique)  a, b, c, 90, be, 90 
-552   
-553      Virtual base class 
-554      """ 
-555      _NumPar = 4 
-556       
-557      VarSetupDict = { 
-558          1:  [("a", ["a"], 1)], 
-559          2:  [("b", ["b"], 1)], 
-560          3:  [("c", ["c"], 1)], 
-561          4:  [("beta", ["beta"], 1)], 
-562      } 
-
        563   
-564  # END [class MonoclinicRefineSetup(LatticeRefineSetup)] 
-565   
-566   
-
        567 -class TrigonalRefineSetup(LatticeRefineSetup): 
-
        568      """ 
-569      class to set up single Lattice to refine 
-570   
-571      Trigonal        P, R         
-572          One 3-fold axis  a, a, c, 90, 90, 120 
-573      """ 
-574      _NumPar = 2 
-575      VarSetupDict = { 
-576          1:  [("ab", ["a", "b"], 1)], 
-577          2:  [("c", ["c"], 1)], 
-578      } 
-
        579   
-580  # END [class TrigonalRefineSetup(LatticeRefineSetup)] 
-581   
-582   
-
        584      """ Refinement setup for symmetric peak shape of constant wave peak profile, 
-585      """ 
-586      VarSetupDict = { 
-587              1: [ ("pfW", ["W"], 1) ], 
-588              2: [ ("pfU", ["U"], 1) ], 
-589              3: [ ("pfV", ["V"], 1) ], 
-590              } 
-
        591   
-592  # END -- class ConstantWaveSymmetricPeakShapeRefineSetup(RefineSetup) 
-593   
-594   
-
        595 -class RegularPseudoVoigtRefineSetup(ConstantWaveSymmetricPeakShapeRefineSetup): 
-
        596      """ Refinement setup for symmetric peak shape of constant wave peak profile, 
-597      including 
-598      1. Pseudo-Voigt 
-599      2. Triple Pseudo-Voigt 
-600      """ 
-601      VarSetupDict = { 
-602              1: [ ("pfW", ["W"], 1), 
-603                   ("pfX", ["X"], 2) ], 
-604              2: [ ("pfU", ["U"], 1) ], 
-605              3: [ ("pfV", ["V"], 1) ], 
-606              4: [ ("eta", ["eta0"], 1) ], 
-607              }   
-
        608  # END-DEF-CLASS RegularPseudoVoigtRefineSetup 
-609   
-610   
-
        611 -class SplitPseudoVoigRefineSetup(RefineSetup): 
-
        612      """ Refinement setup for split pseudo-voigt peak profile 
-613      """ 
-614      VarSetupDict = { 
-615              1: [ ("pfWL", ["WL"], 1) ], 
-616              2: [ ("pfWR", ["WR"], 1) ], 
-617              3: [ ("pfUL", ["UL"], 1) ], 
-618              4: [ ("pfUR", ["UR"], 1) ], 
-619              5: [ ("pfVL", ["VL"], 1) ], 
-620              6: [ ("pfVR", ["VR"], 1) ], 
-621              7: [ ("etaL", ["eta0L"], 1) ], 
-622              8: [ ("etaR", ["eta0R"], 1) ], 
-623              }       
-
        624       
-625  # END -- class SplitPseudoVoigtRefineSetup 
-626   
-627   
-
        628 -class TCHPseudoVoigtRefineSetup(ConstantWaveSymmetricPeakShapeRefineSetup): 
-
        629      """ Refinement setup for Thomas-Cox-H Pseudo-Voigt peak profile 
-630   
-631      Note: refining X is in stage 2 
-632      """ 
-633      VarSetupDict = { 
-634              1: [ ("pfW", ["W"], 1), 
-635                   ("pfX", ["X"], 2) ], 
-636              2: [ ("pfU", ["U"], 1) ], 
-637              3: [ ("pfV", ["V"], 1) ], 
-638              } 
-
        639  # END-DEF-CLASS TCHPseudoVoigtRefineSetup 
-640   
-641   
-
        642 -class TOFPseudoVoigtRefinement(RefineSetup): 
-
        643      """ Refinement setup for T.O.F. PseudoVoigt peak profile 
-644   
-645      Parameters including: sig0, sig1, sig2, gam0, gam1, gam2,  
-646   
-647      The sensitive parameters are refined in stage 2 
-648      """ 
-649      VarSetupDict = { 
-650              1: [ ("sigma2", ["sigma2"], 1), 
-651                   ("gamma2", ["gamma2"], 2) ], 
-652              2: [ ("sigma1", ["sigma1"], 1), 
-653                   ("gamma1", ["gamma1"], 2) ], 
-654              3: [ ("gamma0", ["gamma0"], 2) ], 
-655              4: [ ("sigma0", ["sigma0"], 2) ] 
-656              } 
-
        657   
-658  # END-Class-Def TOFPseudoVoigtRefinement 
-659   
-660   
-
        661 -class PseudoVoigtExpDSpacingRefineSetup(RefineSetup): 
-
        662      """ Refinement setup for PseudoVoigt Expoenetial D-Spacing Peak profile 
-663   
-664      Parameters including: sig0, sig1, sig2, gam0, gam1, gam2,  
-665   
-666      The sensitive parameters are refined in stage 2 and 3 
-667      """ 
-668      VarSetupDict = { 
-669              1: [ ("sigma2", ["sigma2"], 1), 
-670                   ("gamma2", ["gamma2"], 2), 
-671                   ("extinc", ["extinc"], 3) ], 
-672              2: [ ("sigma1", ["sigma1"], 1), 
-673                   ("gamma1", ["gamma1"], 2) ], 
-674              3: [ ("gamma0", ["gamma0"], 2) ], 
-675              4: [ ("sigma0", ["sigma0"], 2) ] 
-676              } 
-
        677   
-678  # END -- class PseudoVoigtExpDSpacingRefineSetup 
-679   
-
        680 -class ScaleFactorRefineSetup(RefineSetup): 
-
        681      """ Refine set up for scale-factor 
-682      """ 
-683      VarSetupDict = { 
-684          1:  [("scale", ["scale"], 1)], 
-685      } 
-
        686   
-687  # END-DEF-CLASS ScaleFactorRefineSetup 
-688   
-689   
-
        690 -class WavelengthRefineSetup(RefineSetup): 
-
        691      """ Refinement set up for Zero-shift 
-692   
-693      Class Variable: 
-694      _NumPar :   Number of parameters to refine   
-695                  If == None:  Unavailable to turn on parameters in sequence 
-696   
-697      """ 
-698      VarSetupDict = { 
-699          1:  [("Lambda", ["Lambda"], 1)], 
-700      }    
-
        701   
-702  # END-DEF-CLASS WavelengthRefineSetup 
-703   
-704   
-
        705 -class ZeroShiftRefineSetup(RefineSetup): 
-
        706      """ Refinement set up for Zero-shift 
-707   
-708      Class Variable: 
-709      _NumPar :   Number of parameters to refine   
-710                  If == None:  Unavailable to turn on parameters in sequence 
-711   
-712      """ 
-713      VarSetupDict = { 
-714          1:  [("zshift", ["zshift"], 1)], 
-715      }    
-
        716   
-717  # END-DEF-CLASS ZeroShiftRefineSetup 
-718   
-719   
-
        720 -class ZeroShiftThermoRefineSetup(RefineSetup): 
-
        721      """ Refinement set up for Zero-shift on a Thermo-neutron instrument 
-722   
-723      Class Variable: 
-724      _NumPar :   Number of parameters to refine   
-725                  If == None:  Unavailable to turn on parameters in sequence 
-726   
-727      """ 
-728      VarSetupDict = { 
-729          1:  [("zshift", ["zshift"])], 
-730          2:  [("zerot", ["zerot"])], 
-731      }    
-
        732   
-733  # END-DEF-CLASS ZeroShiftThermoRefineSetup 
-734   
-
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.AbsorptionCorrectionRefineSetup-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinesetup.AbsorptionCorrectionRefineSetup-class.html deleted file mode 100644 index ebd97b29..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.AbsorptionCorrectionRefineSetup-class.html +++ /dev/null @@ -1,314 +0,0 @@ - - - - - srrietveld.refinesetup.AbsorptionCorrectionRefineSetup - - - - - - - - - - - - - - - - - - - - - - -
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        -
        - -

        Class AbsorptionCorrectionRefineSetup

        source code

        -
        -RefineSetup --+
-              |
-             AbsorptionCorrectionRefineSetup
-
        - -
        -Refinement setup for TOF absorption correction

        - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
            Inherited from RefineSetup
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist, - refinestage=1)
        - initialization...        		 - source code - -
        - -
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine - guide/setup        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
        - -
        - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - VarSetupDict = {1: [('abs1', 'abs1', 1)], 2: [('abs2', 'abs2',... -
        - - - - - - -
        - - - - - -
        Class Variable Details[hide private]
        -
        - -
        - -
        -

        VarSetupDict

        - -
        -
        -
        -
        Value:
        - 
        -{1: [('abs1', 'abs1', 1)], 2: [('abs2', 'abs2', 1)]}
-
        -
        -
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           Home      Trees      Indices      Help   
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        - - Package srrietveld :: - Module refinesetup :: - Class AnisotropicADPRefineSetup - - - - - - -
        [hide private]
        [frames] | no frames]
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        - -

        Class AnisotropicADPRefineSetup

        source code

        -
        -RefineSetup --+
-              |
-             AnisotropicADPRefineSetup
-
        - -
        -Refine set up for anisotropic atomic displacement

        - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
            Inherited from RefineSetup
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist, - refinestage=1)
        - initialization...        		 - source code - -
        - -
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine - guide/setup        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
        - -
        - - - - - - - - - -
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        Class Variables[hide private]
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        -   - - VarSetupDict = {1: [('B11', ['B11'], 1)], 2: [('B22', ['B22'],... -
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        - - - - - -
        Class Variable Details[hide private]
        -
        - -
        - -
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        VarSetupDict

        - -
        -
        -
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        Value:
        - 
        -{1: [('B11', ['B11'], 1)],
- 2: [('B22', ['B22'], 1)],
- 3: [('B33', ['B33'], 1)],
- 4: [('B12', ['B12'], 1)],
- 5: [('B13', ['B13'], 1)],
- 6: [('B23', ['B23'], 1)]}
-
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.AtomFractionalCoordinateRefineSetup-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinesetup.AtomFractionalCoordinateRefineSetup-class.html deleted file mode 100644 index 4e99020b..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.AtomFractionalCoordinateRefineSetup-class.html +++ /dev/null @@ -1,314 +0,0 @@ - - - - - srrietveld.refinesetup.AtomFractionalCoordinateRefineSetup - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refinesetup :: - Class AtomFractionalCoordinateRefineSetup - - - - - - -
        [hide private]
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        -
        - -

        Class AtomFractionalCoordinateRefineSetup

        source code

        -
        -RefineSetup --+
-              |
-             AtomFractionalCoordinateRefineSetup
-
        - -
        -Refine set up for atom's fractional corridnates

        - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
            Inherited from RefineSetup
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist, - refinestage=1)
        - initialization...        		 - source code - -
        - -
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine - guide/setup        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
        - -
        - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
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        -   - - VarSetupDict = {1: [('x', ['x'], 1)], 2: [('y', ['y'], 1)], 3:... -
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        - - - - - -
        Class Variable Details[hide private]
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        - -
        - -
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        VarSetupDict

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        -
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        - 
        -{1: [('x', ['x'], 1)], 2: [('y', ['y'], 1)], 3: [('z', ['z'], 1)]}
-
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.ConstantWaveSymmetricPeakShapeRefineSetup-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinesetup.ConstantWaveSymmetricPeakShapeRefineSetup-class.html deleted file mode 100644 index 41b26c37..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.ConstantWaveSymmetricPeakShapeRefineSetup-class.html +++ /dev/null @@ -1,325 +0,0 @@ - - - - - srrietveld.refinesetup.ConstantWaveSymmetricPeakShapeRefineSetup - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refinesetup :: - Class ConstantWaveSymmetricPeakShapeRefineSetup - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class ConstantWaveSymmetricPeakShapeRefineSetup

        source code

        -
        -RefineSetup --+
-              |
-             ConstantWaveSymmetricPeakShapeRefineSetup
-
        - -
        Known Subclasses:
        -
        - RegularPseudoVoigtRefineSetup, - TCHPseudoVoigtRefineSetup -
        - -
        -Refinement setup for symmetric peak shape of constant wave peak - profile,

        - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
            Inherited from RefineSetup
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist, - refinestage=1)
        - initialization...        		 - source code - -
        - -
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine - guide/setup        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
        - -
        - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - VarSetupDict = {1: [('pfW', ['W'], 1)], 2: [('pfU', ['U'], 1)]... -
        - - - - - - -
        - - - - - -
        Class Variable Details[hide private]
        -
        - -
        - -
        -

        VarSetupDict

        - -
        -
        -
        -
        Value:
        - 
        -{1: [('pfW', ['W'], 1)],
- 2: [('pfU', ['U'], 1)],
- 3: [('pfV', ['V'], 1)]}
-
        -
        -
        -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.CubicRefineSetup-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinesetup.CubicRefineSetup-class.html deleted file mode 100644 index 16ee4755..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.CubicRefineSetup-class.html +++ /dev/null @@ -1,295 +0,0 @@ - - - - - srrietveld.refinesetup.CubicRefineSetup - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
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        - - Package srrietveld :: - Module refinesetup :: - Class CubicRefineSetup - - - - - - -
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        [frames] | no frames]
        -
        - -

        Class CubicRefineSetup

        source code

        -
        -   RefineSetup --+    
-                 |    
-LatticeRefineSetup --+
-                     |
-                    CubicRefineSetup
-
        - -
        -class to set up single Lattice to refine Cubic P, F, I - Four 3-folds along space diagonal a, a, ,a, 90, 90, 90

        - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
            Inherited from LatticeRefineSetup
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine guide/setup...        		 - source code - -
        - -
            Inherited from RefineSetup
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
        - -
        - - - - - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - _NumPar = 1 -
        -   - - _NumSteps = 1 -
        -   - - VarSetupDict = {1: [('abc', ['a', 'b', 'c'], 1)]} -
        - - - - - - - - - - - - - - - - - -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.HexagonalRefineSetup-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinesetup.HexagonalRefineSetup-class.html deleted file mode 100644 index d450454a..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.HexagonalRefineSetup-class.html +++ /dev/null @@ -1,295 +0,0 @@ - - - - - srrietveld.refinesetup.HexagonalRefineSetup - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refinesetup :: - Class HexagonalRefineSetup - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class HexagonalRefineSetup

        source code

        -
        -   RefineSetup --+    
-                 |    
-LatticeRefineSetup --+
-                     |
-                    HexagonalRefineSetup
-
        - -
        -class to set up single Lattice to refine Hexagonal P - One 6-fold axis a, a, c, 90, 90, 120

        - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
            Inherited from LatticeRefineSetup
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine guide/setup...        		 - source code - -
        - -
            Inherited from RefineSetup
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
        - -
        - - - - - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - _NumPar = 2 -
        -   - - _NumSteps = 1 -
        -   - - VarSetupDict = {1: [('ab', ['a', 'b'], 1)], 2: [('c', ['c'], 1)]} -
        - - - - - - - - - - - - - - - - - -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.InterpolatedBackgroundRefineSetup-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinesetup.InterpolatedBackgroundRefineSetup-class.html deleted file mode 100644 index de59e139..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.InterpolatedBackgroundRefineSetup-class.html +++ /dev/null @@ -1,330 +0,0 @@ - - - - - srrietveld.refinesetup.InterpolatedBackgroundRefineSetup - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
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        - - Package srrietveld :: - Module refinesetup :: - Class InterpolatedBackgroundRefineSetup - - - - - - -
        [hide private]
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        -
        - -

        Class InterpolatedBackgroundRefineSetup

        source code

        -
        -RefineSetup --+
-              |
-             InterpolatedBackgroundRefineSetup
-
        - -
        -Refine setup for interploated background

        - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist, - refinestage=1)
        - initialization...        		 - source code - -
        - -
            Inherited from RefineSetup
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine - guide/setup        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
        - -
        - - - - - - - - - -
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        Class Variables[hide private]
        -
        -   - - _NumStages = 1 -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - fit, - rietobjslist, - refinestage=1) -
        (Constructor) -

        -         		source code  -
        - - 
        -initialization
-
-Argument:   
-- fit               :   Fit instance
-- rietobjectslist   :   list, Rietveld objects
-- refinestage       :   int, 
-
-
        -
        -
        Overrides: - RefineSetup.__init__ -
        -
        -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.IsotropicADPRefineSetup-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinesetup.IsotropicADPRefineSetup-class.html deleted file mode 100644 index 67d8d0e8..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.IsotropicADPRefineSetup-class.html +++ /dev/null @@ -1,277 +0,0 @@ - - - - - srrietveld.refinesetup.IsotropicADPRefineSetup - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
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        - - Package srrietveld :: - Module refinesetup :: - Class IsotropicADPRefineSetup - - - - - - -
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        -
        - -

        Class IsotropicADPRefineSetup

        source code

        -
        -RefineSetup --+
-              |
-             IsotropicADPRefineSetup
-
        - -
        -Refine set up for Isotropic atomic displacement factor

        - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
            Inherited from RefineSetup
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist, - refinestage=1)
        - initialization...        		 - source code - -
        - -
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine - guide/setup        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
        - -
        - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - VarSetupDict = {1: [('Biso', ['Biso'], 1)]} -
        - - - - - - - - - - - - - - - - - -
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        - - Package srrietveld :: - Module refinesetup :: - Class LatticeRefineSetup - - - - - - -
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        -
        - -

        Class LatticeRefineSetup

        source code

        -
        -RefineSetup --+
-              |
-             LatticeRefineSetup
-
        - -
        Known Subclasses:
        -
        - CubicRefineSetup, - HexagonalRefineSetup, - MonoclinicRefineSetup, - OrthorhombicRefineSetup, - TetragonalRefineSetup, - TrigonalRefineSetup -
        - -
        -

        class to set up single Lattice to refine

        - Virtual base class for all specific lattice:w

        - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine guide/setup...        		 - source code - -
        - -
            Inherited from RefineSetup
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - fit, - rietobjslist) -
        (Constructor) -

        -         		source code  -
        - - initialization -
        -
        Overrides: - RefineSetup.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        getNumRefineSteps(self, - stage=1) -

        -         		source code  -
        - - 
        -give the number of steps to refine by this unit refine guide/setup
-
-Argument    
-- stage :   int, 
-
-Return  :   integer, number of steps
-
-
        -
        -
        Overrides: - RefineSetup.getNumRefineSteps -
        -
        -
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        - - Package srrietveld :: - Module refinesetup :: - Class MonoclinicRefineSetup - - - - - - -
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        -
        - -

        Class MonoclinicRefineSetup

        source code

        -
        -   RefineSetup --+    
-                 |    
-LatticeRefineSetup --+
-                     |
-                    MonoclinicRefineSetup
-
        - -
        -

        class to set up single Lattice to refine Monoclinic P, C - One 2-fold axis, parallel b (b unique) a, b, c, 90, be, 90

        - Virtual base class

        - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
            Inherited from LatticeRefineSetup
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine guide/setup...        		 - source code - -
        - -
            Inherited from RefineSetup
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
        - -
        - - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - _NumPar = 4 -
        -   - - VarSetupDict = {1: [('a', ['a'], 1)], 2: [('b', ['b'], 1)], 3:... -
        - - - - - - -
        - - - - - -
        Class Variable Details[hide private]
        -
        - -
        - -
        -

        VarSetupDict

        - -
        -
        -
        -
        Value:
        - 
        -{1: [('a', ['a'], 1)],
- 2: [('b', ['b'], 1)],
- 3: [('c', ['c'], 1)],
- 4: [('beta', ['beta'], 1)]}
-
        -
        -
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        - - Package srrietveld :: - Module refinesetup :: - Class OccRefineSetup - - - - - - -
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        -
        - -

        Class OccRefineSetup

        source code

        -
        -RefineSetup --+
-              |
-             OccRefineSetup
-
        - -
        -Refine set up for Atom's occupancy

        - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - myfit, - rietobjectslist)
        - Initialization        		 - source code - -
        - -
            Inherited from RefineSetup
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine - guide/setup        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - myfit, - rietobjectslist) -
        (Constructor) -

        -         		source code  -
        - - Initialization -
        -
        Overrides: - RefineSetup.__init__ -
        -
        -
        -
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        - - Package srrietveld :: - Module refinesetup :: - Class OrthorhombicRefineSetup - - - - - - -
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        -
        - -

        Class OrthorhombicRefineSetup

        source code

        -
        -   RefineSetup --+    
-                 |    
-LatticeRefineSetup --+
-                     |
-                    OrthorhombicRefineSetup
-
        - -
        -

        class to set up single Lattice to refine Orthorhombic P, C - One 2-fold axis, parallel b (b unique) a, b, c, 90, 90, 90

        - Virtual base class

        - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
            Inherited from LatticeRefineSetup
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine guide/setup...        		 - source code - -
        - -
            Inherited from RefineSetup
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
        - -
        - - - - - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - _NumPar = 3 -
        -   - - _NumStep = 3 -
        -   - - VarSetupDict = {1: [('a', ['a'], 1)], 2: [('b', ['b'], 1)], 3:... -
        - - - - - - -
        - - - - - -
        Class Variable Details[hide private]
        -
        - -
        - -
        -

        VarSetupDict

        - -
        -
        -
        -
        Value:
        - 
        -{1: [('a', ['a'], 1)], 2: [('b', ['b'], 1)], 3: [('c', ['c'], 1)]}
-
        -
        -
        -
        -
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        - - Package srrietveld :: - Module refinesetup :: - Class PolynomialBackgroundRefineSetup - - - - - - -
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        -
        - -

        Class PolynomialBackgroundRefineSetup

        source code

        -
        -RefineSetup --+
-              |
-             PolynomialBackgroundRefineSetup
-
        - -
        -refine setup for Polynomial background

        - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist, - refinestage)
        - initialization...        		 - source code - -
        - -
            Inherited from RefineSetup
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine - guide/setup        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
        - -
        - - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - _NumStages = 2 -
        -   - - _MaxOrder = 6 -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - fit, - rietobjslist, - refinestage) -
        (Constructor) -

        -         		source code  -
        - - 
        -initialization
-
-Argument:   
-- fit               :   Fit instance
-- rietobjectslist   :   list, of list, of Rietveld objects
-- refinestage       :   int, 
-
-
        -
        -
        Overrides: - RefineSetup.__init__ -
        -
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        - - Package srrietveld :: - Module refinesetup :: - Class PseudoVoigtExpDSpacingRefineSetup - - - - - - -
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        -
        - -

        Class PseudoVoigtExpDSpacingRefineSetup

        source code

        -
        -RefineSetup --+
-              |
-             PseudoVoigtExpDSpacingRefineSetup
-
        - -
        -

        Refinement setup for PseudoVoigt Expoenetial D-Spacing Peak - profile

        -

        Parameters including: sig0, sig1, sig2, gam0, gam1, gam2,

        - The sensitive parameters are refined in stage 2 and 3

        - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
            Inherited from RefineSetup
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist, - refinestage=1)
        - initialization...        		 - source code - -
        - -
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine - guide/setup        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
        - -
        - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - VarSetupDict = {1: [('sigma2', ['sigma2'], 1), ('gamma2', ['ga... -
        - - - - - - -
        - - - - - -
        Class Variable Details[hide private]
        -
        - -
        - -
        -

        VarSetupDict

        - -
        -
        -
        -
        Value:
        - 
        -{1: [('sigma2', ['sigma2'], 1),
-     ('gamma2', ['gamma2'], 2),
-     ('extinc', ['extinc'], 3)],
- 2: [('sigma1', ['sigma1'], 1), ('gamma1', ['gamma1'], 2)],
- 3: [('gamma0', ['gamma0'], 2)],
- 4: [('sigma0', ['sigma0'], 2)]}
-
        -
        -
        -
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        Class RefineSetup

        source code

        -
        Known Subclasses:
        -
        - AbsorptionCorrectionRefineSetup, - AnisotropicADPRefineSetup, - AtomFractionalCoordinateRefineSetup, - ConstantWaveSymmetricPeakShapeRefineSetup, - LatticeRefineSetup, - InterpolatedBackgroundRefineSetup, - IsotropicADPRefineSetup, - OccRefineSetup, - PolynomialBackgroundRefineSetup, - PseudoVoigtExpDSpacingRefineSetup, - ScaleFactorRefineSetup, - SplitPseudoVoigRefineSetup, - TOFExpDecayRefineSetup, - TOFPseudoVoigtRefinement, - WavelengthRefineSetup, - ZeroShiftRefineSetup, - ZeroShiftThermoRefineSetup -
        - -
        -
        -Guide and set up the Rietveld/Le-Bail refinement on 
-(1) a single or
-(2) several related
-diffpy.rietveldapi objects, such as Pattern, Phase, Atom
-
-Each RefineSetup instance should be used to guide the refinement 
-of one and only one diffpy.rietveldapi objects. 
-If a mismatch occurs, EXCEPTION will be thrown
-
-RefineSetup serves as an INTERFACE (Virtual)
-
-Class Variable:
-_NumPar :   Number of parameters to refine  
-            If == None:  Unavailable to turn on parameters in sequence
-_myFit  :   diffpy.rietveldapi.Fit instance
-_myRietObjsList: list, of list, of Rietveld objects
-
-Class Methods:
-1. setToRefine(fit, rietobj, varindexlist):  set the parameters in 
-1. getRefineInfo(fit, rietobj, varindexlist):  set the parameters in 
-
-


        - - - - - - - - - - - - - - - - - - - - - - -
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        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist, - refinestage=1)
        - initialization...        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine - guide/setup        		 - source code - -
        - -
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - fit, - rietobjslist, - refinestage=1) -
        (Constructor) -

        -         		source code  -
        - - 
        -initialization
-
-Argument:   
-- fit               :   Fit instance
-- rietobjectslist   :   list, of list, of Rietveld objects
-                        [ [main-object, help, ..], [main-object, help, ..], ...]
-- refinestage       :   int, 
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getNumRefineSteps(self, - stage=1) -

        -         		source code  -
        - -

        give the number of steps to refine by this unit refine guide/setup

        - Return : integer, number of steps -
        -
        -
        -
        - -
        - -
        - - -
        -

        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False) -

        -         		source code  -
        - - 
        -
-set a rietveld object to refine mode at a specific STEP
-
-Arguements:
-- rietobjslist  :   list, diffpy.rietveldapi class instance
-- varindexlist  :   list of integer for variable index
-- step          :   integer/str, used to denote step number for parameters 
-                    to refine in multiple steps, such that
-                    1. there are more than one parameters to refine in this guide
-                    2. users requires them to refine in different step
-                    3. default ("all") will take all parameters on in same step
-- stage         :   int, stage to refine this group of parameters
-- dry           :   boolean.  if true, just return, but no mapVP()
-
-Return          :   list, each entry is a 3-tuple (constraint, rietobj, parameter-name)
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1) -

        -         		source code  -
        - - 
        -
-Gather the refinement information, including
-the parameter name, varaible name, and Rietveld objects
-for set up to refine
-
-Virtual
-
-Argument:
-- rietobjslist  :   list of list of diffpy.rietveldapi class instance
-- varindexlist  :   list of integer for variable index
-- refinestep          :   integer/str, used to denote step number for parameters to refine 
-                    in multiple steps, such that
-                    1. there are more than one parameters to refine in this guide
-                    2. users requires them to refine in different step
-                    3. default ("all") will take all parameters on in same step
-
-Return          :   list, each entry is a 3-tuple (constraint, rietobj, parameter-name)
-
-
        -
        -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.RegularPseudoVoigtRefineSetup-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinesetup.RegularPseudoVoigtRefineSetup-class.html deleted file mode 100644 index 12bd2530..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.RegularPseudoVoigtRefineSetup-class.html +++ /dev/null @@ -1,328 +0,0 @@ - - - - - srrietveld.refinesetup.RegularPseudoVoigtRefineSetup - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refinesetup :: - Class RegularPseudoVoigtRefineSetup - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class RegularPseudoVoigtRefineSetup

        source code

        -
        -                          RefineSetup --+    
-                                        |    
-ConstantWaveSymmetricPeakShapeRefineSetup --+
-                                            |
-                                           RegularPseudoVoigtRefineSetup
-
        - -
        -
        -Refinement setup for symmetric peak shape of constant wave peak profile,
-including
-1. Pseudo-Voigt
-2. Triple Pseudo-Voigt
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
            Inherited from RefineSetup
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist, - refinestage=1)
        - initialization...        		 - source code - -
        - -
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine - guide/setup        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
        - -
        - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - VarSetupDict = {1: [('pfW', ['W'], 1), ('pfX', ['X'], 2)], 2: ... -
        - - - - - - -
        - - - - - -
        Class Variable Details[hide private]
        -
        - -
        - -
        -

        VarSetupDict

        - -
        -
        -
        -
        Value:
        - 
        -{1: [('pfW', ['W'], 1), ('pfX', ['X'], 2)],
- 2: [('pfU', ['U'], 1)],
- 3: [('pfV', ['V'], 1)],
- 4: [('eta', ['eta0'], 1)]}
-
        -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.ScaleFactorRefineSetup-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinesetup.ScaleFactorRefineSetup-class.html deleted file mode 100644 index c0a2b6e1..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.ScaleFactorRefineSetup-class.html +++ /dev/null @@ -1,277 +0,0 @@ - - - - - srrietveld.refinesetup.ScaleFactorRefineSetup - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refinesetup :: - Class ScaleFactorRefineSetup - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class ScaleFactorRefineSetup

        source code

        -
        -RefineSetup --+
-              |
-             ScaleFactorRefineSetup
-
        - -
        -Refine set up for scale-factor

        - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
            Inherited from RefineSetup
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist, - refinestage=1)
        - initialization...        		 - source code - -
        - -
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine - guide/setup        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
        - -
        - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - VarSetupDict = {1: [('scale', ['scale'], 1)]} -
        - - - - - - - - - - - - - - - - - -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.SplitPseudoVoigRefineSetup-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinesetup.SplitPseudoVoigRefineSetup-class.html deleted file mode 100644 index af101cde..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.SplitPseudoVoigRefineSetup-class.html +++ /dev/null @@ -1,328 +0,0 @@ - - - - - srrietveld.refinesetup.SplitPseudoVoigRefineSetup - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refinesetup :: - Class SplitPseudoVoigRefineSetup - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class SplitPseudoVoigRefineSetup

        source code

        -
        -RefineSetup --+
-              |
-             SplitPseudoVoigRefineSetup
-
        - -
        -Refinement setup for split pseudo-voigt peak profile

        - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
            Inherited from RefineSetup
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist, - refinestage=1)
        - initialization...        		 - source code - -
        - -
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine - guide/setup        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
        - -
        - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - VarSetupDict = {1: [('pfWL', ['WL'], 1)], 2: [('pfWR', ['WR'],... -
        - - - - - - -
        - - - - - -
        Class Variable Details[hide private]
        -
        - -
        - -
        -

        VarSetupDict

        - -
        -
        -
        -
        Value:
        - 
        -{1: [('pfWL', ['WL'], 1)],
- 2: [('pfWR', ['WR'], 1)],
- 3: [('pfUL', ['UL'], 1)],
- 4: [('pfUR', ['UR'], 1)],
- 5: [('pfVL', ['VL'], 1)],
- 6: [('pfVR', ['VR'], 1)],
- 7: [('etaL', ['eta0L'], 1)],
- 8: [('etaR', ['eta0R'], 1)]}
-
        -
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        -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.TCHPseudoVoigtRefineSetup-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinesetup.TCHPseudoVoigtRefineSetup-class.html deleted file mode 100644 index 87065e31..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.TCHPseudoVoigtRefineSetup-class.html +++ /dev/null @@ -1,321 +0,0 @@ - - - - - srrietveld.refinesetup.TCHPseudoVoigtRefineSetup - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
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        - - Package srrietveld :: - Module refinesetup :: - Class TCHPseudoVoigtRefineSetup - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class TCHPseudoVoigtRefineSetup

        source code

        -
        -                          RefineSetup --+    
-                                        |    
-ConstantWaveSymmetricPeakShapeRefineSetup --+
-                                            |
-                                           TCHPseudoVoigtRefineSetup
-
        - -
        -

        Refinement setup for Thomas-Cox-H Pseudo-Voigt peak profile

        - Note: refining X is in stage 2

        - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
            Inherited from RefineSetup
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist, - refinestage=1)
        - initialization...        		 - source code - -
        - -
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine - guide/setup        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
        - -
        - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - VarSetupDict = {1: [('pfW', ['W'], 1), ('pfX', ['X'], 2)], 2: ... -
        - - - - - - -
        - - - - - -
        Class Variable Details[hide private]
        -
        - -
        - -
        -

        VarSetupDict

        - -
        -
        -
        -
        Value:
        - 
        -{1: [('pfW', ['W'], 1), ('pfX', ['X'], 2)],
- 2: [('pfU', ['U'], 1)],
- 3: [('pfV', ['V'], 1)]}
-
        -
        -
        -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.TOFExpDecayRefineSetup-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinesetup.TOFExpDecayRefineSetup-class.html deleted file mode 100644 index f540d7f0..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.TOFExpDecayRefineSetup-class.html +++ /dev/null @@ -1,322 +0,0 @@ - - - - - srrietveld.refinesetup.TOFExpDecayRefineSetup - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refinesetup :: - Class TOFExpDecayRefineSetup - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class TOFExpDecayRefineSetup

        source code

        -
        -RefineSetup --+
-              |
-             TOFExpDecayRefineSetup
-
        - -
        -

        Refinement setup for T.O.F. PseudoVoigt peak profile's exponential - decay

        - Parameters including: alpha0, alpha1, beta0, beta1

        - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
            Inherited from RefineSetup
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist, - refinestage=1)
        - initialization...        		 - source code - -
        - -
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine - guide/setup        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
        - -
        - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - VarSetupDict = {1: [('alpha0', ['alpha0'], 1)], 2: [('alpha1',... -
        - - - - - - -
        - - - - - -
        Class Variable Details[hide private]
        -
        - -
        - -
        -

        VarSetupDict

        - -
        -
        -
        -
        Value:
        - 
        -{1: [('alpha0', ['alpha0'], 1)],
- 2: [('alpha1', ['alpha1'], 1)],
- 3: [('beta0', ['beta0'], 1)],
- 4: [('beta1', ['beta1'], 1)]}
-
        -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.TOFPseudoVoigtRefinement-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinesetup.TOFPseudoVoigtRefinement-class.html deleted file mode 100644 index adc7b610..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.TOFPseudoVoigtRefinement-class.html +++ /dev/null @@ -1,322 +0,0 @@ - - - - - srrietveld.refinesetup.TOFPseudoVoigtRefinement - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
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        - - Package srrietveld :: - Module refinesetup :: - Class TOFPseudoVoigtRefinement - - - - - - -
        [hide private]
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        -
        - -

        Class TOFPseudoVoigtRefinement

        source code

        -
        -RefineSetup --+
-              |
-             TOFPseudoVoigtRefinement
-
        - -
        -

        Refinement setup for T.O.F. PseudoVoigt peak profile

        -

        Parameters including: sig0, sig1, sig2, gam0, gam1, gam2,

        - The sensitive parameters are refined in stage 2

        - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
            Inherited from RefineSetup
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist, - refinestage=1)
        - initialization...        		 - source code - -
        - -
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine - guide/setup        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
        - -
        - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - VarSetupDict = {1: [('sigma2', ['sigma2'], 1), ('gamma2', ['ga... -
        - - - - - - -
        - - - - - -
        Class Variable Details[hide private]
        -
        - -
        - -
        -

        VarSetupDict

        - -
        -
        -
        -
        Value:
        - 
        -{1: [('sigma2', ['sigma2'], 1), ('gamma2', ['gamma2'], 2)],
- 2: [('sigma1', ['sigma1'], 1), ('gamma1', ['gamma1'], 2)],
- 3: [('gamma0', ['gamma0'], 2)],
- 4: [('sigma0', ['sigma0'], 2)]}
-
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.TetragonalRefineSetup-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinesetup.TetragonalRefineSetup-class.html deleted file mode 100644 index d0144651..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.TetragonalRefineSetup-class.html +++ /dev/null @@ -1,296 +0,0 @@ - - - - - srrietveld.refinesetup.TetragonalRefineSetup - - - - - - - - - - - - - - - - - - - - - - -
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        - - Package srrietveld :: - Module refinesetup :: - Class TetragonalRefineSetup - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class TetragonalRefineSetup

        source code

        -
        -   RefineSetup --+    
-                 |    
-LatticeRefineSetup --+
-                     |
-                    TetragonalRefineSetup
-
        - -
        -

        class to set up single Lattice to refine Orthorhombic P, C - One 2-fold axis, parallel b (b unique) a, b, c, 90, 90, 90

        - Virtual base class

        - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
            Inherited from LatticeRefineSetup
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine guide/setup...        		 - source code - -
        - -
            Inherited from RefineSetup
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
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        - - - - - -
        Class Variables[hide private]
        -
        -   - - _NumPar = 2 -
        -   - - _NumSteps = 2 -
        -   - - VarSetupDict = {1: [('ab', ['a', 'b'], 1)], 2: [('c', ['c'], 1)]} -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.TrigonalRefineSetup-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinesetup.TrigonalRefineSetup-class.html deleted file mode 100644 index 4449f6b9..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.TrigonalRefineSetup-class.html +++ /dev/null @@ -1,294 +0,0 @@ - - - - - srrietveld.refinesetup.TrigonalRefineSetup - - - - - - - - - - - - - - - - - - - - - - -
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        - - Package srrietveld :: - Module refinesetup :: - Class TrigonalRefineSetup - - - - - - -
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        -
        - -

        Class TrigonalRefineSetup

        source code

        -
        -   RefineSetup --+    
-                 |    
-LatticeRefineSetup --+
-                     |
-                    TrigonalRefineSetup
-
        - -
        -
        -
-class to set up single Lattice to refine
-
-Trigonal        P, R        
-    One 3-fold axis  a, a, c, 90, 90, 120
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - - - -
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        Instance Methods[hide private]
        -
            Inherited from LatticeRefineSetup
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine guide/setup...        		 - source code - -
        - -
            Inherited from RefineSetup
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
        - -
        - - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - _NumPar = 2 -
        -   - - VarSetupDict = {1: [('ab', ['a', 'b'], 1)], 2: [('c', ['c'], 1)]} -
        - - - - - - - - - - - - - - - - - -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.WavelengthRefineSetup-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinesetup.WavelengthRefineSetup-class.html deleted file mode 100644 index ccc52728..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.WavelengthRefineSetup-class.html +++ /dev/null @@ -1,284 +0,0 @@ - - - - - srrietveld.refinesetup.WavelengthRefineSetup - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
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        - - Package srrietveld :: - Module refinesetup :: - Class WavelengthRefineSetup - - - - - - -
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        -
        - -

        Class WavelengthRefineSetup

        source code

        -
        -RefineSetup --+
-              |
-             WavelengthRefineSetup
-
        - -
        -
        -Refinement set up for Zero-shift
-
-Class Variable:
-_NumPar :   Number of parameters to refine  
-            If == None:  Unavailable to turn on parameters in sequence
-
-


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        Instance Methods[hide private]
        -
            Inherited from RefineSetup
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist, - refinestage=1)
        - initialization...        		 - source code - -
        - -
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine - guide/setup        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
        - -
        - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - VarSetupDict = {1: [('Lambda', ['Lambda'], 1)]} -
        - - - - - - - - - - - - - - - - - -
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        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.ZeroShiftRefineSetup-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinesetup.ZeroShiftRefineSetup-class.html deleted file mode 100644 index 64bdbba7..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinesetup.ZeroShiftRefineSetup-class.html +++ /dev/null @@ -1,284 +0,0 @@ - - - - - srrietveld.refinesetup.ZeroShiftRefineSetup - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
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        [frames] | no frames]
        -
        - -

        Class ZeroShiftRefineSetup

        source code

        -
        -RefineSetup --+
-              |
-             ZeroShiftRefineSetup
-
        - -
        -
        -Refinement set up for Zero-shift
-
-Class Variable:
-_NumPar :   Number of parameters to refine  
-            If == None:  Unavailable to turn on parameters in sequence
-
-


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        - - - - - -
        Instance Methods[hide private]
        -
            Inherited from RefineSetup
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist, - refinestage=1)
        - initialization...        		 - source code - -
        - -
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine - guide/setup        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
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        Class Variables[hide private]
        -
        -   - - VarSetupDict = {1: [('zshift', ['zshift'], 1)]} -
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        - -

        Class ZeroShiftThermoRefineSetup

        source code

        -
        -RefineSetup --+
-              |
-             ZeroShiftThermoRefineSetup
-
        - -
        -
        -Refinement set up for Zero-shift on a Thermo-neutron instrument
-
-Class Variable:
-_NumPar :   Number of parameters to refine  
-            If == None:  Unavailable to turn on parameters in sequence
-
-


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        Instance Methods[hide private]
        -
            Inherited from RefineSetup
        -   - - - - - - -
        __init__(self, - fit, - rietobjslist, - refinestage=1)
        - initialization...        		 - source code - -
        - -
        -   - - - - - - -
        getNumParameters(self)
        - show number of parameters to refine        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineSteps(self, - stage=1)
        - give the number of steps to refine by this unit refine - guide/setup        		 - source code - -
        - -
        -   - - - - - - -
        getRefineInfo(self, - rietobjslist, - varindexlist, - refinestep, - refinestage=1)
        - Gather the refinement information, including -the parameter name, varaible name, and Rietveld objects -for set up to refine - -Virtual - -Argument: -- rietobjslist : list of list of diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- refinestep : integer/str, used to denote step number for parameters to refine - in multiple steps, such that - 1.        		 - source code - -
        - -
        -   - - - - - - -
        setToRefine(self, - rietobjslist, - varindexlist, - stage, - step, - dry=False)
        - set a rietveld object to refine mode at a specific STEP - -Arguements: -- rietobjslist : list, diffpy.rietveldapi class instance -- varindexlist : list of integer for variable index -- step : integer/str, used to denote step number for parameters - to refine in multiple steps, such that - 1.        		 - source code - -
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        Class Variables[hide private]
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        -   - - VarSetupDict = {1: [('zshift', ['zshift'])], 2: [('zerot', ['z... -
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        Class Variable Details[hide private]
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        VarSetupDict

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        -{1: [('zshift', ['zshift'])], 2: [('zerot', ['zerot'])]}
-
        -
        -
        -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy-module.html b/static_root/doc/srrietveld/developers/srrietveld.refinestrategy-module.html deleted file mode 100644 index 880bb4c9..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy-module.html +++ /dev/null @@ -1,358 +0,0 @@ - - - - - srrietveld.refinestrategy - - - - - - - - - - - - - - - - - - - - - - -
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        Module refinestrategy

        source code

        -
        -
-Refine Strategies To Refine A Structur Model 
-
-Created On  2008.07.22
-
-Level 1         RefineStrategy
-  |
-  |       Client Methods      * __init__
-  |                           * getNumRefineGuideSteps(self)
-  |                           * getRefineGuidesOfStep(self, step)
-  |                           * getRefineGuidesRemovedOfStep(self, step)
-  |                           * getRefineTypeOfStep(self, step)
-  |
-  |       Internal Methods    * _setUpGuideDict(self)     Overridable
-  |
-  |
-  |- Level 2    UserDefinedRefineStrategy
-  |
-  |      Client Methods      * __init__(self, userdefinedstrategydict)
-  |
-  |- Level 2    SctrachLebailRefineStrategy
-  |
-  |- Level 2    CalibratedLebailRefineStrategy
-  |
-  |- Level 2    CalibratedXrayRietveldRefineStrategy
-        |
-        |- Level 3  CalibratedXrayFullProfRefineStrategy
-  |
-  |- Level 2    CalibrationXrayRietveldRefineStrategy
-        |
-        |- Level 3  CalibrationXrayFullProfRefineStrategy
-
-


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        Classes[hide private]
        -
        -   - - RefineStrategy
        - Base class for a general refine strategy... -
        -   - - UserDefinedRefineStrategy
        - Extending RefineStrategy to accept user defined strategy -
        -   - - SctrachLebailRefineStrategy
        - Refine strategy only do Le-Bail refinement from scratch - (starting value can be far away from correct value) -
        -   - - CalibratedLebailRefineStrategy
        - Refine strategy only do Le-Bail refinement Start value of - instrument related parameters are calibrated and trustful -
        -   - - CalibratedRietveldRefineStrategy
        - Refine strategy only do Le-Bail refinement Start value of - instrument related parameters are calibrated and trustful -
        -   - - CloseRietveldRefineStrategy
        - Refine strategy for the starting value is very close to the - correct value -
        -   - - CalibratedXrayRietveldRefineStrategy
        - Refine strategy only do Le-Bail refinement Start value of - instrument related parameters are calibrated and trustful -
        -   - - CalibratedXrayFullProfRefineStrategy
        - Refine strategy only do Le-Bail refinement Start value of - instrument related parameters are calibrated and trustful -
        -   - - CalibratedXrayGSASRefineStrategy
        - Refine strategy only do Le-Bail refinement Start value of - instrument related parameters are calibrated and trustful -
        -   - - CalibratedTOFRietveldRefineStrategy
        - Refine strategy only do Rietveld TOF refinement Start value of - instrument related parameters are calibrated and trustful -
        -   - - CalibrationXrayRietveldRefineStrategy
        - Refining strategy for Xray instrument calibration -
        -   - - CalibrationXrayGSASRefineStrategy
        - Refine strategy only do Le-Bail refinement Start value of - instrument related parameters are calibrated and trustful -
        -   - - CalibrationXrayFullProfRefineStrategy
        - Refining strategy for Xray instrument calibration -
        -   - - CalibrationTOFRietveldRefineStrategy
        - Refining strategy for Xray instrument calibration -
        -   - - CalibrationTOFFullProfRefineStrategy
        - TOF instrument calibration refinement strategy for Fullprof - engine -
        -   - - CalibrationTOFGSASRefineStrategy
        - TOF instrument calibration refinement strategy for GSAS - engine -
        - - - - - - - - - -
        - - - - - -
        Variables[hide private]
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        -   - - __id__ = '$Id: refinestrategy.py 2899 2009-03-16 19:10:09Z wdz... -
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        __id__

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        Value:
        - 
        -'$Id: refinestrategy.py 2899 2009-03-16 19:10:09Z wdzhou $'
-
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        -
        - - - - - - - - - - - - - - - - - -
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        Source Code for Module srrietveld.refinestrategy

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2008 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Wenduo Zhou 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14  """ 
- 15  Refine Strategies To Refine A Structur Model  
- 16   
- 17  Created On  2008.07.22 
- 18   
- 19  Level 1         RefineStrategy 
- 20    | 
- 21    |       Client Methods      * __init__ 
- 22    |                           * getNumRefineGuideSteps(self) 
- 23    |                           * getRefineGuidesOfStep(self, step) 
- 24    |                           * getRefineGuidesRemovedOfStep(self, step) 
- 25    |                           * getRefineTypeOfStep(self, step) 
- 26    | 
- 27    |       Internal Methods    * _setUpGuideDict(self)     Overridable 
- 28    | 
- 29    | 
- 30    |- Level 2    UserDefinedRefineStrategy 
- 31    | 
- 32    |      Client Methods      * __init__(self, userdefinedstrategydict) 
- 33    | 
- 34    |- Level 2    SctrachLebailRefineStrategy 
- 35    | 
- 36    |- Level 2    CalibratedLebailRefineStrategy 
- 37    | 
- 38    |- Level 2    CalibratedXrayRietveldRefineStrategy 
- 39          | 
- 40          |- Level 3  CalibratedXrayFullProfRefineStrategy 
- 41    | 
- 42    |- Level 2    CalibrationXrayRietveldRefineStrategy 
- 43          | 
- 44          |- Level 3  CalibrationXrayFullProfRefineStrategy 
- 45   
- 46  """ 
- 47  __id__ = "$Id: refinestrategy.py 2899 2009-03-16 19:10:09Z wdzhou $" 
- 48   
- 49  from diffpy.refinementapi.errors import FitConfigurationError 
- 50  import diffpy.srrietveld.refineguides as RG 
- 51   
-
         52 -class RefineStrategy: 
-
         53      """ Base class for a general refine strategy 
- 54   
- 55      Class Variable 
- 56      -  
- 57      - 
- 58      - 
- 59      """ 
- 60      MaxNumRefineGuidesStep = 20 
- 61      StepFisrtRietveld      = 6 
- 62   
-
         63 -    def __init__(self): 
-
         64          """ Initialization 
- 65          """ 
- 66          # 1. Initialize RefineGuides 
- 67          self.adpguide        = RG.ADPGuide() 
- 68          self.bkgdguide       = RG.BackgroundGuide() 
- 69          self.fraccoordguide  = RG.FractionalCoordinateGuide() 
- 70          self.latticeguide    = RG.LatticeGuide() 
- 71          self.occguide        = RG.OccupancyGuide() 
- 72          self.peakshapeguide  = RG.PeakShapeGuide() 
- 73          self.scaleguide      = RG.ScaleGuide() 
- 74          self.expdecayguuide  = RG.ExpDecayGuide() 
- 75          self.zeroguide       = RG.ZeroGuide() 
- 76          self.absguide        = RG.AbsorptionCorrectionGuide() 
- 77          self.wavelengthguide = RG.WavelengthGuide() 
- 78   
- 79          self._refineGuidesList = [] 
- 80   
- 81          self._refineGuidesList.append(self.absguide      ) 
- 82          self._refineGuidesList.append(self.adpguide      ) 
- 83          self._refineGuidesList.append(self.bkgdguide     ) 
- 84          self._refineGuidesList.append(self.fraccoordguide) 
- 85          self._refineGuidesList.append(self.latticeguide  ) 
- 86          self._refineGuidesList.append(self.occguide      ) 
- 87          self._refineGuidesList.append(self.peakshapeguide) 
- 88          self._refineGuidesList.append(self.scaleguide    ) 
- 89          self._refineGuidesList.append(self.wavelengthguide) 
- 90          self._refineGuidesList.append(self.zeroguide     ) 
- 91   
- 92          # 2.  Set up RefineGuides to different steps 
- 93          # 2.1 Initialize dictionaries 
- 94          self._newGuideDict   = {} 
- 95          self._rmvGuideDict   = {} 
- 96   
- 97          for num in xrange(1, self.MaxNumRefineGuidesStep+1): 
- 98              self._newGuideDict[num] = [] 
- 99              self._rmvGuideDict[num] = [] 
-100   
-101          # 2.2 Set up dictionaries 
-102          self._setUpGuideDict() 
-103   
-104          self.replaceBackground = True 
-105   
-106          return 
-
        107   
-
        108 -    def __str__(self): 
-
        109          """ 
-110          Format output 
-111          """ 
-112          rstring  = "" 
-113          rstring += "Strategy: %-20s  Max Num Step = %-5s   Num Step = %-5s"% \ 
-114              (self.__class__.__name__, self.MaxNumRefineGuidesStep, self.getNumRefineGuideSteps()) 
-115   
-116          return rstring 
-
        117   
-118   
-
        119 -    def _setUpGuideDict(self): 
-
        120          """ 
-121          Set up a dictionary for Refine Guide 
-122   
-123          This is the base class for the guide sequence is in default 
-124          """ 
-125           
-126          # Set up 
-127          self._newGuideDict[1]  = [(self.zeroguide,      1)] 
-128          self._newGuideDict[2]  = [(self.latticeguide,   1)] 
-129          self._newGuideDict[3]  = [(self.bkgdguide,      1)] 
-130          self._newGuideDict[4]  = [(self.peakshapeguide, 1)] 
-131          self._newGuideDict[5]  = [(self.absguide,       1)] 
-132   
-133          self._newGuideDict[6]  = [(self.scaleguide,     1)] 
-134          self._newGuideDict[7]  = [(self.zeroguide,      1)] 
-135          self._newGuideDict[8]  = [(self.bkgdguide,      1)] 
-136          self._newGuideDict[9]  = [(self.fraccoordguide, 1)] 
-137          self._newGuideDict[10] = [(self.peakshapeguide, 1)] 
-138          self._newGuideDict[11] = [(self.absguide,       1)] 
-139          self._newGuideDict[12] = [(self.bkgdguide,      2)] 
-140   
-141          self._rmvGuideDict[4]  = [(self.bkgdguide,      1)] 
-142   
-143          return 
-
        144   
-145   
-
        146 -    def getNumRefineGuideSteps(self): 
-
        147          """ 
-148          Get the number of steps of guided refinement; 
-149          Notice that in each guided refinement, there will be more steps 
-150          according to the specific RefineGuide 
-151   
-152          Return  :   int 
-153          """ 
-154          numsteps = self.MaxNumRefineGuidesStep 
-155          for step in xrange(1, self.MaxNumRefineGuidesStep): 
-156              if len(self._newGuideDict[step]) == 0: 
-157                  numsteps = step-1 
-158                  break 
-159   
-160          return numsteps 
-
        161   
-162       
-
        163 -    def getRefineGuidesOfStep(self, step): 
-
        164          """ 
-165          Get the refine guides at a certain step 
-166   
-167          Exception: 
-168          1. if there is no RefineGuide specified at this step 
-169   
-170          Argument: 
-171          - step  :   int 
-172   
-173          Return  :   list of tuple (RefineGuides, Stage) 
-174          """ 
-175          if not isinstance(step, int): 
-176              errmsg = "Input argument step = %-10s.  Not Allowed as an Integer!" % \ 
-177                      step 
-178              raise FitConfigurationError(errmsg) 
-179   
-180          rglist = self._newGuideDict[step] 
-181          stage  = -1 
-182           
-183          if len(rglist) == 0: 
-184              errmsg = "No RefineGuide is set up at Step = %-5s"% (step) 
-185              raise FitConfigurationError(errmsg) 
-186   
-187          return (rglist) 
-
        188   
-189   
-
        190 -    def getRefineGuidesRemovedOfStep(self, step): 
-
        191          """ 
-192          Get the RefineGuides to be excluded from the current step 
-193           
-194          Argument: 
-195          - step  :   int 
-196   
-197          Return  :   list of 2-tuple (RefineGuide, int stage) 
-198          """ 
-199          rmlist = self._rmvGuideDict[step] 
-200   
-201          return rmlist 
-
        202   
-203   
-
        204 -    def getRefineTypeOfStep(self, step): 
-
        205          """ 
-206          Get the refinement type, Le-Bail or Rietveld 
-207   
-208          Argument: 
-209          - step  :   integer, number of RefineGuide 
-210   
-211          Return  :   str, 'rietveld' or 'lebail' 
-212          """ 
-213          if step < 0: 
-214              step = self.getNumRefineGuideSteps()+step 
-215   
-216          if step < self.StepFisrtRietveld: 
-217              refinetype = "lebail" 
-218          else: 
-219              refinetype = "rietveld" 
-220   
-221          return refinetype 
-
        222   
-223   
-
        224 -    def offRefinementProcess(self, myfit, refinestep): 
-
        225          """ 
-226          Some Non-Rietveld Refinement process coming up as special treatment 
-227   
-228          Arguments: 
-229          - myfit     :   diffpy.rietveldapi.Fit instance 
-230          - refinestep:   integer 
-231   
-232          Return      :   None 
-233          """ 
-234          import utilbackground as UBKGD 
-235          if self.replaceBackground is True and refinestep == 1 and self.getRefineTypeOfStep(refinestep) == "lebail": 
-236              # 1. replace the current background by interpolated background 
-237              UBKGD.replaceInterpolatedBackground(myfit)  
-238   
-239          return 
-
        240   
-241   
-
        242 -    def removeGuideAtStep(self, strategystep): 
-
        243          """ 
-244          Tell the client whether the parameters refined in this refine-strategy step  
-245          should be refined again in the following steps 
-246   
-247          Arguement: 
-248          - strategstep   :   int 
-249   
-250          Return          :   boolean 
-251          """ 
-252          if self._rmvGuideDict.has_key(strategystep): 
-253              if self._newGuideDict[strategystep] == self._rmvGuideDict[strategystep]: 
-254                  rvalue = True 
-255              else: 
-256                  rvalue = False 
-257                  wmsg   = "Guide %-20s Is Not Removed At Refine-Strategy Step %-5s.  Message 0508"% \ 
-258                      (self._rmvGuideDict[strategystep], strategystep) 
-259                  print wmsg 
-260   
-261          else: 
-262              rvalue = False 
-263   
-264          return rvalue 
-
        265   
-266   
-
        267 -    def setReplaceBackground(self, on): 
-
        268          """ 
-269          Set replace background functionality to be on/off 
-270   
-271          Argument: 
-272          - on    :   boolean 
-273   
-274          Return  :   None 
-275          """ 
-276          self.replaceBackground = on 
-277   
-278          return 
-
        279   
-280   
-
        281 -class UserDefinedRefineStrategy(RefineStrategy): 
-
        282      """ 
-283      Extending RefineStrategy to accept user defined strategy 
-284      """ 
-
        285 -    def __init__(self, userdefinedstrategydict): 
-
        286          """ 
-287          Initialization 
-288   
-289          Argument: 
-290          - userdefinedstrategydict   :   dictionary for 2-tuple:  (str, int) 
-291                                          str:        refine guide's name 
-292                                          int/None:   stage 
-293          """ 
-294          if isinstance(userdefinedstrategydict, dict): 
-295              self._userdefinedstrategydict = userdefinedstrategydict  
-296          else: 
-297              raise NotImplementedError("Input type incorrect!") 
-298   
-299          RefineStrategy.__init__(self) 
-300   
-301          return 
-
        302   
-303   
-
        304 -    def _setUpGuideDict(self): 
-
        305          """ 
-306          Overriding base class method 
-307           
-308          Requirement on self._userdefinedstrategydict:  dictionary with value as list of strings 
-309          """ 
-310          # 1. Initialization 
-311          self._refineGuideTypeDict = {} 
-312   
-313          # 2. Preparation 
-314          stepsnumlist = sorted(self._userdefinedstrategydict.keys()) 
-315          laststepnum  = stepsnumlist[-1] 
-316   
-317          # 3. Set up 
-318          for step in xrange(1, laststepnum+1): 
-319              # 1. new guide 
-320              rguideslist = [] 
-321              rguidenameslist = self._userdefinedstrategydict[step]["new"] 
-322              for rguidename, stage in rguidenameslist: 
-323                  rguide = self.mapNameRefineGuide(rguidename) 
-324                  rguideslist.append( (rguide, stage )) 
-325              self._newGuideDict[step] = rguideslist 
-326   
-327              # 2. remove guide  
-328              rguideslist = [] 
-329              rguidenameslist = self._userdefinedstrategydict[step]["rm"] 
-330              for rguidename, stage in rguidenameslist: 
-331                  rguide = self.mapNameRefineGuide(rguidename) 
-332                  rguideslist.append( (rguide, stage) ) 
-333              self._rmvGuideDict[step] = rguideslist 
-334   
-335              # 3. get refine type 
-336              rguidetype = self._userdefinedstrategydict[step]["type"] 
-337              self._refineGuideTypeDict[step] = rguidetype 
-338   
-339          # LOOP-OVER:  for step in xrange(1, laststepnum+1) 
-340   
-341          return 
-
        342                              
-343   
-
        344 -    def getRefineTypeOfStep(self, step): 
-
        345          """ 
-346          Overriding base class method 
-347          """ 
-348          if step < 0: 
-349              # refine-guide step starts from 1 
-350              step = self.getNumRefineGuideSteps() + 1 + step 
-351   
-352          return self._refineGuideTypeDict[step] 
-
        353   
-354   
-
        355 -    def mapNameRefineGuide(self, rguidename): 
-
        356          """ 
-357          From the RefineGuide's name to get the RefineGuide's object in this object 
-358   
-359          Assumption all the names are the class name 
-360   
-361          Arguments: 
-362          - rguidename    :   str 
-363   
-364          Return          :   RefineGuide instance 
-365          """ 
-366          thisguide = None 
-367   
-368          for rguide in self._refineGuidesList: 
-369              if rguide.__class__.__name__ == rguidename: 
-370                  thisguide = rguide 
-371                  break 
-372   
-373          if thisguide is None: 
-374              errmsg = "Cannot Find RefineGuide %-20s Initialized"% (rguidename) 
-375              raise FitConfigurationError(errmsg) 
-376   
-377          return thisguide 
-
        378                   
-379   
-380  # END CLASS UserDefinedRefineStrategy(RefineStrategy) 
-381   
-
        382 -class SctrachLebailRefineStrategy(RefineStrategy): 
-
        383      """ 
-384      Refine strategy only do Le-Bail refinement  
-385      from scratch (starting value can be far away from correct value) 
-386      """ 
-387      MaxNumRefineGuidesStep = 5 
-388      StepFisrtRietveld      = 100 
-389   
-
        390 -    def __init__(self): 
-
        391          """ 
-392          Initialization 
-393          """ 
-394          RefineStrategy.__init__(self) 
-395   
-396          return 
-
        397   
-
        398 -    def _setUpGuideDict(self): 
-
        399          """ 
-400          Set up a dictionary for Refine Guide 
-401   
-402          This is the base class for the guide sequence is in default 
-403          """ 
-404           
-405          # Set up 
-406          self._newGuideDict[1]  = [self.zeroguide] 
-407          self._newGuideDict[2]  = [self.latticeguide] 
-408          self._newGuideDict[3]  = [self.bkgdguide] 
-409          self._newGuideDict[4]  = [self.peakshapeguide] 
-410          self._newGuideDict[5]  = [self.absguide] 
-411   
-412          return 
-
        413   
-414  # END CLASS: SctrachLebailRefineStrategy(RefineStrategy) 
-415   
-416   
-
        417 -class CalibratedLebailRefineStrategy(RefineStrategy): 
-
        418      """ 
-419      Refine strategy only do Le-Bail refinement 
-420      Start value of instrument related parameters are calibrated 
-421      and trustful 
-422      """ 
-423      MaxNumRefineGuidesStep = 5 
-424      StepFisrtRietveld      = 100 
-425   
-
        426 -    def __init__(self, maxnumsteps=None): 
-
        427          """ 
-428          Initialization 
-429          """ 
-430          RefineStrategy.__init__(self) 
-431   
-432          if maxnumsteps is not None: 
-433              self.MaxNumRefineGuidesStep = maxnumsteps 
-434   
-435          return 
-
        436   
-
        437 -    def _setUpGuideDict(self): 
-
        438          """ 
-439          Set up a dictionary for Refine Guide 
-440   
-441          This is the base class for the guide sequence is in default 
-442          """ 
-443           
-444          # Set up 
-445          self._newGuideDict[1]  = [(self.latticeguide, 1)] 
-446          self._newGuideDict[2]  = [(self.bkgdguide   , 1)] 
-447          self._newGuideDict[3]  = [(self.zeroguide   , 1)] 
-448   
-449          return 
-
        450   
-451  # END CLASS: CalibratedLebailRefineStrategy(RefineStrategy) 
-452   
-453   
-
        454 -class CalibratedRietveldRefineStrategy(RefineStrategy): 
-
        455      """ 
-456      Refine strategy only do Le-Bail refinement 
-457      Start value of instrument related parameters are calibrated 
-458      and trustful 
-459      """ 
-460      MaxNumRefineGuidesStep = 9 
-461      StepFisrtRietveld      = 3 
-462   
-
        463 -    def __init__(self, maxnumsteps=None): 
-
        464          """ 
-465          Initialization 
-466          """ 
-467          RefineStrategy.__init__(self) 
-468   
-469          if maxnumsteps is not None: 
-470              self.MaxNumRefineGuidesStep = maxnumsteps 
-471   
-472          return 
-
        473   
-
        474 -    def _setUpGuideDict(self): 
-
        475          """ 
-476          Set up a dictionary for Refine Guide 
-477   
-478          This is the base class for the guide sequence is in default 
-479          """ 
-480           
-481          # Set up 
-482          self._newGuideDict[1]  = [(self.latticeguide  , 1)] 
-483          self._newGuideDict[2]  = [(self.bkgdguide     , 1)] 
-484   
-485          self._newGuideDict[3]  = [(self.scaleguide,     1)] 
-486          self._newGuideDict[4]  = [(self.zeroguide,      1)] 
-487          self._newGuideDict[5]  = [(self.bkgdguide,      1)] 
-488          self._newGuideDict[6]  = [(self.fraccoordguide, 1)] 
-489          self._newGuideDict[7]  = [(self.peakshapeguide, 1)] 
-490          self._newGuideDict[8]  = [(self.adpguide,       1)] 
-491          self._newGuideDict[9]  = [(self.bkgdguide,      2)] 
-492   
-493          self._rmvGuideDict[5]  = [(self.bkgdguide,      1)] 
-494   
-495          return 
-
        496   
-497  # END CLASS: CalibratedLebailRefineStrategy(RefineStrategy) 
-498   
-499   
-
        500 -class CloseRietveldRefineStrategy(RefineStrategy): 
-
        501      """ Refine strategy for the starting value is very close 
-502      to the correct value 
-503   
-504      Start value of instrument related parameters are calibrated 
-505      and trustful 
-506      """ 
-507      MaxNumRefineGuidesStep = 8 
-508      StepFisrtRietveld      = 1 
-509   
-
        510 -    def __init__(self, maxnumsteps=None): 
-
        511          """ Initialization 
-512          """ 
-513          RefineStrategy.__init__(self) 
-514   
-515          if maxnumsteps is not None: 
-516              self.MaxNumRefineGuidesStep = maxnumsteps 
-517   
-518          return 
-
        519   
-
        520 -    def _setUpGuideDict(self): 
-
        521          """ 
-522          Set up a dictionary for Refine Guide 
-523   
-524          This is the base class for the guide sequence is in default 
-525          """ 
-526           
-527          # Set up 
-528          self._newGuideDict[1]  = [(self.scaleguide,     1)] 
-529          self._newGuideDict[2]  = [(self.zeroguide,      1)] 
-530          self._newGuideDict[3]  = [(self.bkgdguide,      1)] 
-531          self._newGuideDict[4]  = [(self.latticeguide  , 1)] 
-532          self._newGuideDict[5]  = [(self.fraccoordguide, 1)] 
-533          self._newGuideDict[6]  = [(self.peakshapeguide, 1)] 
-534          self._newGuideDict[7]  = [(self.adpguide,       1)] 
-535          self._newGuideDict[8]  = [(self.bkgdguide,      2)] 
-536   
-537          self._rmvGuideDict[3]  = [(self.bkgdguide,      1)] 
-538   
-539          return 
-
        540   
-541  # END CLASS: CalibratedLebailRefineStrategy(RefineStrategy) 
-542   
-543   
-
        544 -class CalibratedXrayRietveldRefineStrategy(RefineStrategy): 
-
        545      """ 
-546      Refine strategy only do Le-Bail refinement 
-547      Start value of instrument related parameters are calibrated 
-548      and trustful 
-549      """ 
-550      MaxNumRefineGuidesStep = 9 
-551      StepFisrtRietveld      = 4 
-552   
-
        553 -    def __init__(self, maxnumsteps=None): 
-
        554          """ 
-555          Initialization 
-556          """ 
-557          RefineStrategy.__init__(self) 
-558   
-559          if maxnumsteps is not None: 
-560              self.MaxNumRefineGuidesStep = maxnumsteps 
-561   
-562          return 
-
        563   
-
        564 -    def _setUpGuideDict(self): 
-
        565          """ 
-566          Set up a dictionary for Refine Guide 
-567   
-568          This is the base class for the guide sequence is in default 
-569          """ 
-570           
-571          # Set up 
-572          # 1. Lebail 
-573          self._newGuideDict[1]  = [(self.zeroguide  , 1)] 
-574          self._newGuideDict[2]  = [(self.latticeguide  , 1)] 
-575          self._newGuideDict[3]  = [(self.bkgdguide     , 1)] 
-576   
-577          self._rmvGuideDict[3]  = [(self.bkgdguide,      1)] 
-578   
-579          # 2. Rietveld 
-580          self._newGuideDict[4]  = [(self.scaleguide,     1)] 
-581          self._newGuideDict[5]  = [(self.zeroguide,      1)] 
-582          self._newGuideDict[6]  = [(self.bkgdguide,      1)] 
-583          self._newGuideDict[7]  = [(self.fraccoordguide, 1)] 
-584          self._newGuideDict[8]  = [(self.peakshapeguide, 1)] 
-585          self._newGuideDict[9]  = [(self.adpguide,       1)] 
-586   
-587          self._rmvGuideDict[6]  = [(self.bkgdguide,      1)] 
-588   
-589          return 
-
        590   
-591  # END CLASS: CalibrateXrayRietveldRefineStrategy(RefineStrategy) 
-592   
-593   
-
        594 -class CalibratedXrayFullProfRefineStrategy(CalibratedXrayRietveldRefineStrategy): 
-
        595      """ 
-596      Refine strategy only do Le-Bail refinement 
-597      Start value of instrument related parameters are calibrated 
-598      and trustful 
-599      """ 
-
        600 -    def __init__(self, maxnumsteps=None): 
-
        601          """ 
-602          Initialization 
-603          """ 
-604          CalibratedXrayRietveldRefineStrategy.__init__(self, maxnumsteps) 
-605   
-606          return 
-
        607   
-608  # END CLASS 
-609   
-
        610 -class CalibratedXrayGSASRefineStrategy(CalibratedXrayRietveldRefineStrategy): 
-
        611      """ 
-612      Refine strategy only do Le-Bail refinement 
-613      Start value of instrument related parameters are calibrated 
-614      and trustful 
-615      """ 
-616      MaxNumRefineGuidesStep = 7 
-617      StepFisrtRietveld      = 4 
-618   
-
        619 -    def __init__(self, maxnumsteps=None): 
-
        620          """ 
-621          Initialization 
-622          """ 
-623          CalibratedXrayRietveldRefineStrategy.__init__(self) 
-624   
-625   
-626          return 
-
        627   
-
        628 -    def _setUpGuideDict(self): 
-
        629          """ 
-630          Set up a dictionary for Refine Guide 
-631   
-632          This is the base class for the guide sequence is in default 
-633          """ 
-634           
-635          # Set up 
-636          # 1. Lebail 
-637          self._newGuideDict[1]   = [(self.zeroguide  , 1)] 
-638          self._newGuideDict[2]   = [(self.bkgdguide  , 1)] 
-639          self._newGuideDict[3]   = [(self.latticeguide     , 1)] 
-640          #self._newGuideDict[4]   = [(self.zeroguide  , 1)] 
-641   
-642          #self._rmvGuideDict[1]   = [(self.zeroguide, 1)] 
-643          self._rmvGuideDict[2]   = [(self.bkgdguide, 1)] 
-644   
-645          # 2. Rietveld 
-646          self._newGuideDict[4]   = [(self.bkgdguide,  1)] 
-647          self._newGuideDict[5]   = [(self.scaleguide,      1)] 
-648          self._newGuideDict[6]   = [(self.adpguide, 1)] 
-649          self._newGuideDict[7]   = [(self.peakshapeguide, 1)] 
-650          self._rmvGuideDict[4]   = [(self.bkgdguide, 1)] 
-651   
-652          return 
-
        653   
-654   
-655  # END CLASS 
-656   
-657   
-658   
-
        659 -class CalibratedTOFRietveldRefineStrategy(CalibratedRietveldRefineStrategy): 
-
        660      """ 
-661      Refine strategy only do Rietveld TOF refinement 
-662      Start value of instrument related parameters are calibrated 
-663      and trustful 
-664      """ 
-
        665 -    def __init__(self, maxnumsteps=None): 
-
        666          """ 
-667          Initialization 
-668          """ 
-669          CalibratedRietveldRefineStrategy.__init__(self, maxnumsteps) 
-670   
-671          return 
-
        672           
-673  # END-DEF class CalibratedTOFRietveldRefineStrategy 
-674   
-675   
-
        676 -class CalibrationXrayRietveldRefineStrategy(RefineStrategy): 
-
        677      """ Refining strategy for Xray instrument calibration 
-678       
-679      Requirement: 
-680      * The input structure mnodel is trustful! 
-681      """ 
-682      MaxNumRefineGuidesStep = 10 
-683      StepFisrtRietveld      = 4 
-684   
-
        685 -    def __init__(self, maxnumsteps=None): 
-
        686          """ Initialization 
-687   
-688          Argument: 
-689          - maxnumsteps   :   int, limit max number of step 
-690   
-691          Return          :   None 
-692          """ 
-693          # 2. Call base class 
-694          RefineStrategy.__init__(self) 
-695   
-696          if maxnumsteps is not None: 
-697              self.MaxNumRefineGuidesStep = maxnumsteps 
-698   
-699          return 
-
        700   
-
        701 -    def _setUpGuideDict(self): 
-
        702          """ 
-703          Set up a dictionary for Refine Guide 
-704   
-705          This is the base class for the guide sequence is in default 
-706          """ 
-707           
-708          # Set up 
-709          # 1. Lebail 
-710          self._newGuideDict[1]  = [(self.zeroguide     , 1)] 
-711          self._newGuideDict[2]  = [(self.bkgdguide     , 1)] 
-712          self._newGuideDict[3]  = [(self.peakshapeguide, 1)] 
-713   
-714          self._rmvGuideDict[2]  = [(self.bkgdguide,      1)] 
-715   
-716          # 2. Rietveld 
-717          self._newGuideDict[4]  = [(self.scaleguide,     1)] 
-718          self._newGuideDict[5]  = [(self.zeroguide,      1)] 
-719          self._newGuideDict[6]  = [(self.bkgdguide,      1)] 
-720          self._newGuideDict[7]  = [(self.peakshapeguide, 1)] 
-721          self._newGuideDict[8]  = [(self.adpguide,       1)] 
-722          self._newGuideDict[9]  = [(self.wavelengthguide, 1)] 
-723          self._newGuideDict[10] = [(self.peakshapeguide, 2)] 
-724   
-725          self._rmvGuideDict[6]  = [(self.bkgdguide,      1)] 
-726   
-727          return 
-
        728   
-729  # END CLASS: CalibrationXrayRietveldRefineStrategy(RefineStrategy) 
-730   
-
        731 -class CalibrationXrayGSASRefineStrategy(CalibrationXrayRietveldRefineStrategy): 
-
        732      """ 
-733      Refine strategy only do Le-Bail refinement 
-734      Start value of instrument related parameters are calibrated 
-735      and trustful 
-736      """ 
-737      #MaxNumRefineGuidesStep = 8 
-738      #StepFisrtRietveld      = 5 
-739   
-
        740 -    def __init__(self, maxnumsteps=None): 
-
        741          """ 
-742          Initialization 
-743          """ 
-744          CalibrationXrayRietveldRefineStrategy.__init__(self, maxnumsteps) 
-745   
-746          return 
-
        747   
-
        748 -class CalibrationXrayFullProfRefineStrategy(CalibrationXrayRietveldRefineStrategy): 
-
        749      """ 
-750      Refining strategy for Xray instrument calibration 
-751       
-752      The input structure mnodel is trustful! 
-753      """ 
-
        754 -    def __init__(self, maxnumsteps=None): 
-
        755          """ 
-756          Initialization 
-757          """ 
-758          CalibrationXrayRietveldRefineStrategy.__init__(self, maxnumsteps) 
-759   
-760          return 
-
        761   
-762  # END-DEF Class CalibrationXryFullProfRefineStrategy 
-763   
-764   
-
        765 -class CalibrationTOFRietveldRefineStrategy(RefineStrategy): 
-
        766      """ 
-767      Refining strategy for Xray instrument calibration 
-768       
-769      The input structure mnodel is trustful! 
-770      """ 
-771      MaxNumRefineGuidesStep = 11 
-772      StepFisrtRietveld      = 5 
-773   
-
        774 -    def __init__(self, maxnumsteps=None): 
-
        775          """ Initialization 
-776   
-777          Argument: 
-778          - maxnumstep    :   int, user defined maximum number of steps 
-779   
-780          Return          :   None 
-781          """ 
-782          RefineStrategy.__init__(self) 
-783   
-784          if maxnumsteps is not None: 
-785              self.MaxNumRefineGuidesStep = maxnumsteps 
-786   
-787          return 
-
        788   
-
        789 -    def _setUpGuideDict(self): 
-
        790          """ 
-791          Set up a dictionary for Refine Guide 
-792   
-793          This is the base class for the guide sequence is in default 
-794          """ 
-795           
-796          # Set up 
-797          # 1. Lebail 
-798          self._newGuideDict[1]  = [(self.zeroguide     , 1)] 
-799          self._newGuideDict[2]  = [(self.bkgdguide     , 1)] 
-800          self._newGuideDict[3]  = [(self.peakshapeguide, 1)] 
-801          self._newGuideDict[4]  = [(self.expdecayguuide, 1)] 
-802   
-803          # 2. Rietveld 
-804          self._newGuideDict[5]  = [(self.scaleguide,     1)] 
-805          self._newGuideDict[6]  = [(self.scaleguide,     1)] 
-806          self._newGuideDict[7]  = [(self.scaleguide,     1)] 
-807          self._newGuideDict[8]  = [(self.scaleguide,     1)] 
-808          self._newGuideDict[9]  = [(self.zeroguide,      1)] 
-809          self._newGuideDict[10]  = [(self.bkgdguide,      1)] 
-810          self._newGuideDict[11]  = [(self.peakshapeguide, 1)] 
-811          self._newGuideDict[12]  = [(self.adpguide,       1)] 
-812   
-813          return 
-
        814   
-815  # END-DEF class CalibrationTOFRietveldRefineStrategy 
-816   
-
        817 -class CalibrationTOFFullProfRefineStrategy(CalibrationTOFRietveldRefineStrategy): 
-
        818      """ 
-819      TOF instrument calibration refinement strategy for Fullprof engine 
-820      """ 
-
        821 -    def __init__(self, maxnumsteps=None): 
-
        822          """ 
-823          Initialization 
-824          """ 
-825          CalibrationTOFRietveldRefineStrategy.__init__(self, maxnumsteps) 
-826   
-827          return 
-
        828   
-829  # END-DEF class CalibrationTOFFullProfRefineStrategy 
-830   
-831   
-
        832 -class CalibrationTOFGSASRefineStrategy(CalibrationTOFRietveldRefineStrategy): 
-
        833      """ 
-834      TOF instrument calibration refinement strategy for GSAS engine 
-835      """ 
-
        836 -    def __init__(self, maxnumsteps=None): 
-
        837          """ 
-838          Initialization 
-839          """ 
-840          CalibrationTOFRietveldRefineStrategy.__init__(self, maxnumsteps) 
-841   
-842          return 
-
        843   
-844  # END-DEF class CalibrationTOFGSASRefineStrategy 
-845   
-
        -
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        - - Package srrietveld :: - Module refinestrategy :: - Class CalibratedLebailRefineStrategy - - - - - - -
        [hide private]
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        -
        - -

        Class CalibratedLebailRefineStrategy

        source code

        -
        -RefineStrategy --+
-                 |
-                CalibratedLebailRefineStrategy
-
        - -
        -Refine strategy only do Le-Bail refinement Start value of instrument - related parameters are calibrated and trustful

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - maxnumsteps=None)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        _setUpGuideDict(self)
        - Set up a dictionary for Refine Guide        		 - source code - -
        - -
            Inherited from RefineStrategy
        -   - - - - - - -
        __str__(self)
        - Format output        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineGuideSteps(self)
        - Get the number of steps of guided refinement; Notice that in each - guided refinement, there will be more steps according to the specific - RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesOfStep(self, - step)
        - Get the refine guides at a certain step - -Exception: -1.        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesRemovedOfStep(self, - step)
        - Get the RefineGuides to be excluded from the current step...        		 - source code - -
        - -
        -   - - - - - - -
        getRefineTypeOfStep(self, - step)
        - Get the refinement type, Le-Bail or Rietveld...        		 - source code - -
        - -
        -   - - - - - - -
        offRefinementProcess(self, - myfit, - refinestep)
        - Some Non-Rietveld Refinement process coming up as special treatment...        		 - source code - -
        - -
        -   - - - - - - -
        removeGuideAtStep(self, - strategystep)
        - Tell the client whether the parameters refined in this refine-strategy step ...        		 - source code - -
        - -
        -   - - - - - - -
        setReplaceBackground(self, - on)
        - Set replace background functionality to be on/off...        		 - source code - -
        - -
        - - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - MaxNumRefineGuidesStep = 5 -
        -   - - StepFisrtRietveld = 100 -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - maxnumsteps=None) -
        (Constructor) -

        -         		source code  -
        - - Initialization -
        -
        Overrides: - RefineStrategy.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        _setUpGuideDict(self) -

        -         		source code  -
        - -

        Set up a dictionary for Refine Guide

        - This is the base class for the guide sequence is in default -
        -
        Overrides: - RefineStrategy._setUpGuideDict -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibratedRietveldRefineStrategy-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibratedRietveldRefineStrategy-class.html deleted file mode 100644 index 81962102..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibratedRietveldRefineStrategy-class.html +++ /dev/null @@ -1,422 +0,0 @@ - - - - - srrietveld.refinestrategy.CalibratedRietveldRefineStrategy - - - - - - - - - - - - - - - - - - - - - - -
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        [hide private]
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        -
        - -

        Class CalibratedRietveldRefineStrategy

        source code

        -
        -RefineStrategy --+
-                 |
-                CalibratedRietveldRefineStrategy
-
        - -
        Known Subclasses:
        -
        - CalibratedTOFRietveldRefineStrategy -
        - -
        -Refine strategy only do Le-Bail refinement Start value of instrument - related parameters are calibrated and trustful

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - maxnumsteps=None)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        _setUpGuideDict(self)
        - Set up a dictionary for Refine Guide        		 - source code - -
        - -
            Inherited from RefineStrategy
        -   - - - - - - -
        __str__(self)
        - Format output        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineGuideSteps(self)
        - Get the number of steps of guided refinement; Notice that in each - guided refinement, there will be more steps according to the specific - RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesOfStep(self, - step)
        - Get the refine guides at a certain step - -Exception: -1.        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesRemovedOfStep(self, - step)
        - Get the RefineGuides to be excluded from the current step...        		 - source code - -
        - -
        -   - - - - - - -
        getRefineTypeOfStep(self, - step)
        - Get the refinement type, Le-Bail or Rietveld...        		 - source code - -
        - -
        -   - - - - - - -
        offRefinementProcess(self, - myfit, - refinestep)
        - Some Non-Rietveld Refinement process coming up as special treatment...        		 - source code - -
        - -
        -   - - - - - - -
        removeGuideAtStep(self, - strategystep)
        - Tell the client whether the parameters refined in this refine-strategy step ...        		 - source code - -
        - -
        -   - - - - - - -
        setReplaceBackground(self, - on)
        - Set replace background functionality to be on/off...        		 - source code - -
        - -
        - - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - MaxNumRefineGuidesStep = 9 -
        -   - - StepFisrtRietveld = 3 -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - maxnumsteps=None) -
        (Constructor) -

        -         		source code  -
        - - Initialization -
        -
        Overrides: - RefineStrategy.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        _setUpGuideDict(self) -

        -         		source code  -
        - -

        Set up a dictionary for Refine Guide

        - This is the base class for the guide sequence is in default -
        -
        Overrides: - RefineStrategy._setUpGuideDict -
        -
        -
        -
        -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibratedTOFRietveldRefineStrategy-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibratedTOFRietveldRefineStrategy-class.html deleted file mode 100644 index 4f5388ef..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibratedTOFRietveldRefineStrategy-class.html +++ /dev/null @@ -1,402 +0,0 @@ - - - - - srrietveld.refinestrategy.CalibratedTOFRietveldRefineStrategy - - - - - - - - - - - - - - - - - - - - - - -
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        [hide private]
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        -
        - -

        Class CalibratedTOFRietveldRefineStrategy

        source code

        -
        -              RefineStrategy --+    
-                               |    
-CalibratedRietveldRefineStrategy --+
-                                   |
-                                  CalibratedTOFRietveldRefineStrategy
-
        - -
        -Refine strategy only do Rietveld TOF refinement Start value of - instrument related parameters are calibrated and trustful

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - maxnumsteps=None)
        - Initialization        		 - source code - -
        - -
            Inherited from CalibratedRietveldRefineStrategy
        -   - - - - - - -
        _setUpGuideDict(self)
        - Set up a dictionary for Refine Guide        		 - source code - -
        - -
            Inherited from RefineStrategy
        -   - - - - - - -
        __str__(self)
        - Format output        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineGuideSteps(self)
        - Get the number of steps of guided refinement; Notice that in each - guided refinement, there will be more steps according to the specific - RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesOfStep(self, - step)
        - Get the refine guides at a certain step - -Exception: -1.        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesRemovedOfStep(self, - step)
        - Get the RefineGuides to be excluded from the current step...        		 - source code - -
        - -
        -   - - - - - - -
        getRefineTypeOfStep(self, - step)
        - Get the refinement type, Le-Bail or Rietveld...        		 - source code - -
        - -
        -   - - - - - - -
        offRefinementProcess(self, - myfit, - refinestep)
        - Some Non-Rietveld Refinement process coming up as special treatment...        		 - source code - -
        - -
        -   - - - - - - -
        removeGuideAtStep(self, - strategystep)
        - Tell the client whether the parameters refined in this refine-strategy step ...        		 - source code - -
        - -
        -   - - - - - - -
        setReplaceBackground(self, - on)
        - Set replace background functionality to be on/off...        		 - source code - -
        - -
        - - - - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
            Inherited from CalibratedRietveldRefineStrategy
        -   - - MaxNumRefineGuidesStep = 9 -
        -   - - StepFisrtRietveld = 3 -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - maxnumsteps=None) -
        (Constructor) -

        -         		source code  -
        - - Initialization -
        -
        Overrides: - CalibratedRietveldRefineStrategy.__init__ -
        -
        -
        -
        -
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        -
        - -

        Class CalibratedXrayFullProfRefineStrategy

        source code

        -
        -                  RefineStrategy --+    
-                                   |    
-CalibratedXrayRietveldRefineStrategy --+
-                                       |
-                                      CalibratedXrayFullProfRefineStrategy
-
        - -
        -Refine strategy only do Le-Bail refinement Start value of instrument - related parameters are calibrated and trustful

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - maxnumsteps=None)
        - Initialization        		 - source code - -
        - -
            Inherited from CalibratedXrayRietveldRefineStrategy
        -   - - - - - - -
        _setUpGuideDict(self)
        - Set up a dictionary for Refine Guide        		 - source code - -
        - -
            Inherited from RefineStrategy
        -   - - - - - - -
        __str__(self)
        - Format output        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineGuideSteps(self)
        - Get the number of steps of guided refinement; Notice that in each - guided refinement, there will be more steps according to the specific - RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesOfStep(self, - step)
        - Get the refine guides at a certain step - -Exception: -1.        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesRemovedOfStep(self, - step)
        - Get the RefineGuides to be excluded from the current step...        		 - source code - -
        - -
        -   - - - - - - -
        getRefineTypeOfStep(self, - step)
        - Get the refinement type, Le-Bail or Rietveld...        		 - source code - -
        - -
        -   - - - - - - -
        offRefinementProcess(self, - myfit, - refinestep)
        - Some Non-Rietveld Refinement process coming up as special treatment...        		 - source code - -
        - -
        -   - - - - - - -
        removeGuideAtStep(self, - strategystep)
        - Tell the client whether the parameters refined in this refine-strategy step ...        		 - source code - -
        - -
        -   - - - - - - -
        setReplaceBackground(self, - on)
        - Set replace background functionality to be on/off...        		 - source code - -
        - -
        - - - - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
            Inherited from CalibratedXrayRietveldRefineStrategy
        -   - - MaxNumRefineGuidesStep = 9 -
        -   - - StepFisrtRietveld = 4 -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - maxnumsteps=None) -
        (Constructor) -

        -         		source code  -
        - - Initialization -
        -
        Overrides: - CalibratedXrayRietveldRefineStrategy.__init__ -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibratedXrayGSASRefineStrategy-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibratedXrayGSASRefineStrategy-class.html deleted file mode 100644 index 40f9d2b9..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibratedXrayGSASRefineStrategy-class.html +++ /dev/null @@ -1,419 +0,0 @@ - - - - - srrietveld.refinestrategy.CalibratedXrayGSASRefineStrategy - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refinestrategy :: - Class CalibratedXrayGSASRefineStrategy - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class CalibratedXrayGSASRefineStrategy

        source code

        -
        -                  RefineStrategy --+    
-                                   |    
-CalibratedXrayRietveldRefineStrategy --+
-                                       |
-                                      CalibratedXrayGSASRefineStrategy
-
        - -
        -Refine strategy only do Le-Bail refinement Start value of instrument - related parameters are calibrated and trustful

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - maxnumsteps=None)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        _setUpGuideDict(self)
        - Set up a dictionary for Refine Guide        		 - source code - -
        - -
            Inherited from RefineStrategy
        -   - - - - - - -
        __str__(self)
        - Format output        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineGuideSteps(self)
        - Get the number of steps of guided refinement; Notice that in each - guided refinement, there will be more steps according to the specific - RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesOfStep(self, - step)
        - Get the refine guides at a certain step - -Exception: -1.        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesRemovedOfStep(self, - step)
        - Get the RefineGuides to be excluded from the current step...        		 - source code - -
        - -
        -   - - - - - - -
        getRefineTypeOfStep(self, - step)
        - Get the refinement type, Le-Bail or Rietveld...        		 - source code - -
        - -
        -   - - - - - - -
        offRefinementProcess(self, - myfit, - refinestep)
        - Some Non-Rietveld Refinement process coming up as special treatment...        		 - source code - -
        - -
        -   - - - - - - -
        removeGuideAtStep(self, - strategystep)
        - Tell the client whether the parameters refined in this refine-strategy step ...        		 - source code - -
        - -
        -   - - - - - - -
        setReplaceBackground(self, - on)
        - Set replace background functionality to be on/off...        		 - source code - -
        - -
        - - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - MaxNumRefineGuidesStep = 7 -
        -   - - StepFisrtRietveld = 4 -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - maxnumsteps=None) -
        (Constructor) -

        -         		source code  -
        - - Initialization -
        -
        Overrides: - CalibratedXrayRietveldRefineStrategy.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        _setUpGuideDict(self) -

        -         		source code  -
        - -

        Set up a dictionary for Refine Guide

        - This is the base class for the guide sequence is in default -
        -
        Overrides: - CalibratedXrayRietveldRefineStrategy._setUpGuideDict -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibratedXrayRietveldRefineStrategy-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibratedXrayRietveldRefineStrategy-class.html deleted file mode 100644 index f5ca8a26..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibratedXrayRietveldRefineStrategy-class.html +++ /dev/null @@ -1,423 +0,0 @@ - - - - - srrietveld.refinestrategy.CalibratedXrayRietveldRefineStrategy - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refinestrategy :: - Class CalibratedXrayRietveldRefineStrategy - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class CalibratedXrayRietveldRefineStrategy

        source code

        -
        -RefineStrategy --+
-                 |
-                CalibratedXrayRietveldRefineStrategy
-
        - -
        Known Subclasses:
        -
        - CalibratedXrayFullProfRefineStrategy, - CalibratedXrayGSASRefineStrategy -
        - -
        -Refine strategy only do Le-Bail refinement Start value of instrument - related parameters are calibrated and trustful

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - maxnumsteps=None)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        _setUpGuideDict(self)
        - Set up a dictionary for Refine Guide        		 - source code - -
        - -
            Inherited from RefineStrategy
        -   - - - - - - -
        __str__(self)
        - Format output        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineGuideSteps(self)
        - Get the number of steps of guided refinement; Notice that in each - guided refinement, there will be more steps according to the specific - RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesOfStep(self, - step)
        - Get the refine guides at a certain step - -Exception: -1.        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesRemovedOfStep(self, - step)
        - Get the RefineGuides to be excluded from the current step...        		 - source code - -
        - -
        -   - - - - - - -
        getRefineTypeOfStep(self, - step)
        - Get the refinement type, Le-Bail or Rietveld...        		 - source code - -
        - -
        -   - - - - - - -
        offRefinementProcess(self, - myfit, - refinestep)
        - Some Non-Rietveld Refinement process coming up as special treatment...        		 - source code - -
        - -
        -   - - - - - - -
        removeGuideAtStep(self, - strategystep)
        - Tell the client whether the parameters refined in this refine-strategy step ...        		 - source code - -
        - -
        -   - - - - - - -
        setReplaceBackground(self, - on)
        - Set replace background functionality to be on/off...        		 - source code - -
        - -
        - - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - MaxNumRefineGuidesStep = 9 -
        -   - - StepFisrtRietveld = 4 -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - maxnumsteps=None) -
        (Constructor) -

        -         		source code  -
        - - Initialization -
        -
        Overrides: - RefineStrategy.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        _setUpGuideDict(self) -

        -         		source code  -
        - -

        Set up a dictionary for Refine Guide

        - This is the base class for the guide sequence is in default -
        -
        Overrides: - RefineStrategy._setUpGuideDict -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibrationTOFFullProfRefineStrategy-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibrationTOFFullProfRefineStrategy-class.html deleted file mode 100644 index 17335a1f..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibrationTOFFullProfRefineStrategy-class.html +++ /dev/null @@ -1,401 +0,0 @@ - - - - - srrietveld.refinestrategy.CalibrationTOFFullProfRefineStrategy - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refinestrategy :: - Class CalibrationTOFFullProfRefineStrategy - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class CalibrationTOFFullProfRefineStrategy

        source code

        -
        -                  RefineStrategy --+    
-                                   |    
-CalibrationTOFRietveldRefineStrategy --+
-                                       |
-                                      CalibrationTOFFullProfRefineStrategy
-
        - -
        -TOF instrument calibration refinement strategy for Fullprof engine

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - maxnumsteps=None)
        - Initialization        		 - source code - -
        - -
            Inherited from CalibrationTOFRietveldRefineStrategy
        -   - - - - - - -
        _setUpGuideDict(self)
        - Set up a dictionary for Refine Guide        		 - source code - -
        - -
            Inherited from RefineStrategy
        -   - - - - - - -
        __str__(self)
        - Format output        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineGuideSteps(self)
        - Get the number of steps of guided refinement; Notice that in each - guided refinement, there will be more steps according to the specific - RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesOfStep(self, - step)
        - Get the refine guides at a certain step - -Exception: -1.        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesRemovedOfStep(self, - step)
        - Get the RefineGuides to be excluded from the current step...        		 - source code - -
        - -
        -   - - - - - - -
        getRefineTypeOfStep(self, - step)
        - Get the refinement type, Le-Bail or Rietveld...        		 - source code - -
        - -
        -   - - - - - - -
        offRefinementProcess(self, - myfit, - refinestep)
        - Some Non-Rietveld Refinement process coming up as special treatment...        		 - source code - -
        - -
        -   - - - - - - -
        removeGuideAtStep(self, - strategystep)
        - Tell the client whether the parameters refined in this refine-strategy step ...        		 - source code - -
        - -
        -   - - - - - - -
        setReplaceBackground(self, - on)
        - Set replace background functionality to be on/off...        		 - source code - -
        - -
        - - - - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
            Inherited from CalibrationTOFRietveldRefineStrategy
        -   - - MaxNumRefineGuidesStep = 11 -
        -   - - StepFisrtRietveld = 5 -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - maxnumsteps=None) -
        (Constructor) -

        -         		source code  -
        - - Initialization -
        -
        Overrides: - CalibrationTOFRietveldRefineStrategy.__init__ -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibrationTOFGSASRefineStrategy-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibrationTOFGSASRefineStrategy-class.html deleted file mode 100644 index c57da7cd..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibrationTOFGSASRefineStrategy-class.html +++ /dev/null @@ -1,401 +0,0 @@ - - - - - srrietveld.refinestrategy.CalibrationTOFGSASRefineStrategy - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refinestrategy :: - Class CalibrationTOFGSASRefineStrategy - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class CalibrationTOFGSASRefineStrategy

        source code

        -
        -                  RefineStrategy --+    
-                                   |    
-CalibrationTOFRietveldRefineStrategy --+
-                                       |
-                                      CalibrationTOFGSASRefineStrategy
-
        - -
        -TOF instrument calibration refinement strategy for GSAS engine

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - maxnumsteps=None)
        - Initialization        		 - source code - -
        - -
            Inherited from CalibrationTOFRietveldRefineStrategy
        -   - - - - - - -
        _setUpGuideDict(self)
        - Set up a dictionary for Refine Guide        		 - source code - -
        - -
            Inherited from RefineStrategy
        -   - - - - - - -
        __str__(self)
        - Format output        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineGuideSteps(self)
        - Get the number of steps of guided refinement; Notice that in each - guided refinement, there will be more steps according to the specific - RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesOfStep(self, - step)
        - Get the refine guides at a certain step - -Exception: -1.        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesRemovedOfStep(self, - step)
        - Get the RefineGuides to be excluded from the current step...        		 - source code - -
        - -
        -   - - - - - - -
        getRefineTypeOfStep(self, - step)
        - Get the refinement type, Le-Bail or Rietveld...        		 - source code - -
        - -
        -   - - - - - - -
        offRefinementProcess(self, - myfit, - refinestep)
        - Some Non-Rietveld Refinement process coming up as special treatment...        		 - source code - -
        - -
        -   - - - - - - -
        removeGuideAtStep(self, - strategystep)
        - Tell the client whether the parameters refined in this refine-strategy step ...        		 - source code - -
        - -
        -   - - - - - - -
        setReplaceBackground(self, - on)
        - Set replace background functionality to be on/off...        		 - source code - -
        - -
        - - - - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
            Inherited from CalibrationTOFRietveldRefineStrategy
        -   - - MaxNumRefineGuidesStep = 11 -
        -   - - StepFisrtRietveld = 5 -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - maxnumsteps=None) -
        (Constructor) -

        -         		source code  -
        - - Initialization -
        -
        Overrides: - CalibrationTOFRietveldRefineStrategy.__init__ -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibrationTOFRietveldRefineStrategy-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibrationTOFRietveldRefineStrategy-class.html deleted file mode 100644 index ae11a7a4..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibrationTOFRietveldRefineStrategy-class.html +++ /dev/null @@ -1,431 +0,0 @@ - - - - - srrietveld.refinestrategy.CalibrationTOFRietveldRefineStrategy - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refinestrategy :: - Class CalibrationTOFRietveldRefineStrategy - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class CalibrationTOFRietveldRefineStrategy

        source code

        -
        -RefineStrategy --+
-                 |
-                CalibrationTOFRietveldRefineStrategy
-
        - -
        Known Subclasses:
        -
        - CalibrationTOFFullProfRefineStrategy, - CalibrationTOFGSASRefineStrategy -
        - -
        -

        Refining strategy for Xray instrument calibration

        - The input structure mnodel is trustful!

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - maxnumsteps=None)
        - Initialization...        		 - source code - -
        - -
        -   - - - - - - -
        _setUpGuideDict(self)
        - Set up a dictionary for Refine Guide        		 - source code - -
        - -
            Inherited from RefineStrategy
        -   - - - - - - -
        __str__(self)
        - Format output        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineGuideSteps(self)
        - Get the number of steps of guided refinement; Notice that in each - guided refinement, there will be more steps according to the specific - RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesOfStep(self, - step)
        - Get the refine guides at a certain step - -Exception: -1.        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesRemovedOfStep(self, - step)
        - Get the RefineGuides to be excluded from the current step...        		 - source code - -
        - -
        -   - - - - - - -
        getRefineTypeOfStep(self, - step)
        - Get the refinement type, Le-Bail or Rietveld...        		 - source code - -
        - -
        -   - - - - - - -
        offRefinementProcess(self, - myfit, - refinestep)
        - Some Non-Rietveld Refinement process coming up as special treatment...        		 - source code - -
        - -
        -   - - - - - - -
        removeGuideAtStep(self, - strategystep)
        - Tell the client whether the parameters refined in this refine-strategy step ...        		 - source code - -
        - -
        -   - - - - - - -
        setReplaceBackground(self, - on)
        - Set replace background functionality to be on/off...        		 - source code - -
        - -
        - - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - MaxNumRefineGuidesStep = 11 -
        -   - - StepFisrtRietveld = 5 -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - maxnumsteps=None) -
        (Constructor) -

        -         		source code  -
        - - 
        -Initialization
-
-Argument:
-- maxnumstep    :   int, user defined maximum number of steps
-
-Return          :   None
-
-
        -
        -
        Overrides: - RefineStrategy.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        _setUpGuideDict(self) -

        -         		source code  -
        - -

        Set up a dictionary for Refine Guide

        - This is the base class for the guide sequence is in default -
        -
        Overrides: - RefineStrategy._setUpGuideDict -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibrationXrayFullProfRefineStrategy-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibrationXrayFullProfRefineStrategy-class.html deleted file mode 100644 index e833e9de..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibrationXrayFullProfRefineStrategy-class.html +++ /dev/null @@ -1,402 +0,0 @@ - - - - - srrietveld.refinestrategy.CalibrationXrayFullProfRefineStrategy - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refinestrategy :: - Class CalibrationXrayFullProfRefineStrategy - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class CalibrationXrayFullProfRefineStrategy

        source code

        -
        -                   RefineStrategy --+    
-                                    |    
-CalibrationXrayRietveldRefineStrategy --+
-                                        |
-                                       CalibrationXrayFullProfRefineStrategy
-
        - -
        -

        Refining strategy for Xray instrument calibration

        - The input structure mnodel is trustful!

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - maxnumsteps=None)
        - Initialization        		 - source code - -
        - -
            Inherited from CalibrationXrayRietveldRefineStrategy
        -   - - - - - - -
        _setUpGuideDict(self)
        - Set up a dictionary for Refine Guide        		 - source code - -
        - -
            Inherited from RefineStrategy
        -   - - - - - - -
        __str__(self)
        - Format output        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineGuideSteps(self)
        - Get the number of steps of guided refinement; Notice that in each - guided refinement, there will be more steps according to the specific - RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesOfStep(self, - step)
        - Get the refine guides at a certain step - -Exception: -1.        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesRemovedOfStep(self, - step)
        - Get the RefineGuides to be excluded from the current step...        		 - source code - -
        - -
        -   - - - - - - -
        getRefineTypeOfStep(self, - step)
        - Get the refinement type, Le-Bail or Rietveld...        		 - source code - -
        - -
        -   - - - - - - -
        offRefinementProcess(self, - myfit, - refinestep)
        - Some Non-Rietveld Refinement process coming up as special treatment...        		 - source code - -
        - -
        -   - - - - - - -
        removeGuideAtStep(self, - strategystep)
        - Tell the client whether the parameters refined in this refine-strategy step ...        		 - source code - -
        - -
        -   - - - - - - -
        setReplaceBackground(self, - on)
        - Set replace background functionality to be on/off...        		 - source code - -
        - -
        - - - - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
            Inherited from CalibrationXrayRietveldRefineStrategy
        -   - - MaxNumRefineGuidesStep = 10 -
        -   - - StepFisrtRietveld = 4 -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - maxnumsteps=None) -
        (Constructor) -

        -         		source code  -
        - - Initialization -
        -
        Overrides: - CalibrationXrayRietveldRefineStrategy.__init__ -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibrationXrayGSASRefineStrategy-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibrationXrayGSASRefineStrategy-class.html deleted file mode 100644 index 694995fa..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibrationXrayGSASRefineStrategy-class.html +++ /dev/null @@ -1,402 +0,0 @@ - - - - - srrietveld.refinestrategy.CalibrationXrayGSASRefineStrategy - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refinestrategy :: - Class CalibrationXrayGSASRefineStrategy - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class CalibrationXrayGSASRefineStrategy

        source code

        -
        -                   RefineStrategy --+    
-                                    |    
-CalibrationXrayRietveldRefineStrategy --+
-                                        |
-                                       CalibrationXrayGSASRefineStrategy
-
        - -
        -Refine strategy only do Le-Bail refinement Start value of instrument - related parameters are calibrated and trustful

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - maxnumsteps=None)
        - Initialization        		 - source code - -
        - -
            Inherited from CalibrationXrayRietveldRefineStrategy
        -   - - - - - - -
        _setUpGuideDict(self)
        - Set up a dictionary for Refine Guide        		 - source code - -
        - -
            Inherited from RefineStrategy
        -   - - - - - - -
        __str__(self)
        - Format output        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineGuideSteps(self)
        - Get the number of steps of guided refinement; Notice that in each - guided refinement, there will be more steps according to the specific - RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesOfStep(self, - step)
        - Get the refine guides at a certain step - -Exception: -1.        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesRemovedOfStep(self, - step)
        - Get the RefineGuides to be excluded from the current step...        		 - source code - -
        - -
        -   - - - - - - -
        getRefineTypeOfStep(self, - step)
        - Get the refinement type, Le-Bail or Rietveld...        		 - source code - -
        - -
        -   - - - - - - -
        offRefinementProcess(self, - myfit, - refinestep)
        - Some Non-Rietveld Refinement process coming up as special treatment...        		 - source code - -
        - -
        -   - - - - - - -
        removeGuideAtStep(self, - strategystep)
        - Tell the client whether the parameters refined in this refine-strategy step ...        		 - source code - -
        - -
        -   - - - - - - -
        setReplaceBackground(self, - on)
        - Set replace background functionality to be on/off...        		 - source code - -
        - -
        - - - - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
            Inherited from CalibrationXrayRietveldRefineStrategy
        -   - - MaxNumRefineGuidesStep = 10 -
        -   - - StepFisrtRietveld = 4 -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - maxnumsteps=None) -
        (Constructor) -

        -         		source code  -
        - - Initialization -
        -
        Overrides: - CalibrationXrayRietveldRefineStrategy.__init__ -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibrationXrayRietveldRefineStrategy-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibrationXrayRietveldRefineStrategy-class.html deleted file mode 100644 index 01336012..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CalibrationXrayRietveldRefineStrategy-class.html +++ /dev/null @@ -1,431 +0,0 @@ - - - - - srrietveld.refinestrategy.CalibrationXrayRietveldRefineStrategy - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refinestrategy :: - Class CalibrationXrayRietveldRefineStrategy - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class CalibrationXrayRietveldRefineStrategy

        source code

        -
        -RefineStrategy --+
-                 |
-                CalibrationXrayRietveldRefineStrategy
-
        - -
        Known Subclasses:
        -
        - CalibrationXrayFullProfRefineStrategy, - CalibrationXrayGSASRefineStrategy -
        - -
        -

        Refining strategy for Xray instrument calibration

        - Requirement: * The input structure mnodel is trustful!

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - maxnumsteps=None)
        - Initialization...        		 - source code - -
        - -
        -   - - - - - - -
        _setUpGuideDict(self)
        - Set up a dictionary for Refine Guide        		 - source code - -
        - -
            Inherited from RefineStrategy
        -   - - - - - - -
        __str__(self)
        - Format output        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineGuideSteps(self)
        - Get the number of steps of guided refinement; Notice that in each - guided refinement, there will be more steps according to the specific - RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesOfStep(self, - step)
        - Get the refine guides at a certain step - -Exception: -1.        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesRemovedOfStep(self, - step)
        - Get the RefineGuides to be excluded from the current step...        		 - source code - -
        - -
        -   - - - - - - -
        getRefineTypeOfStep(self, - step)
        - Get the refinement type, Le-Bail or Rietveld...        		 - source code - -
        - -
        -   - - - - - - -
        offRefinementProcess(self, - myfit, - refinestep)
        - Some Non-Rietveld Refinement process coming up as special treatment...        		 - source code - -
        - -
        -   - - - - - - -
        removeGuideAtStep(self, - strategystep)
        - Tell the client whether the parameters refined in this refine-strategy step ...        		 - source code - -
        - -
        -   - - - - - - -
        setReplaceBackground(self, - on)
        - Set replace background functionality to be on/off...        		 - source code - -
        - -
        - - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - MaxNumRefineGuidesStep = 10 -
        -   - - StepFisrtRietveld = 4 -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - maxnumsteps=None) -
        (Constructor) -

        -         		source code  -
        - - 
        -Initialization
-
-Argument:
-- maxnumsteps   :   int, limit max number of step
-
-Return          :   None
-
-
        -
        -
        Overrides: - RefineStrategy.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        _setUpGuideDict(self) -

        -         		source code  -
        - -

        Set up a dictionary for Refine Guide

        - This is the base class for the guide sequence is in default -
        -
        Overrides: - RefineStrategy._setUpGuideDict -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CloseRietveldRefineStrategy-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CloseRietveldRefineStrategy-class.html deleted file mode 100644 index 99641a4c..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.CloseRietveldRefineStrategy-class.html +++ /dev/null @@ -1,419 +0,0 @@ - - - - - srrietveld.refinestrategy.CloseRietveldRefineStrategy - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refinestrategy :: - Class CloseRietveldRefineStrategy - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class CloseRietveldRefineStrategy

        source code

        -
        -RefineStrategy --+
-                 |
-                CloseRietveldRefineStrategy
-
        - -
        -

        Refine strategy for the starting value is very close to the correct - value

        - Start value of instrument related parameters are calibrated and - trustful

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - maxnumsteps=None)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        _setUpGuideDict(self)
        - Set up a dictionary for Refine Guide        		 - source code - -
        - -
            Inherited from RefineStrategy
        -   - - - - - - -
        __str__(self)
        - Format output        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineGuideSteps(self)
        - Get the number of steps of guided refinement; Notice that in each - guided refinement, there will be more steps according to the specific - RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesOfStep(self, - step)
        - Get the refine guides at a certain step - -Exception: -1.        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesRemovedOfStep(self, - step)
        - Get the RefineGuides to be excluded from the current step...        		 - source code - -
        - -
        -   - - - - - - -
        getRefineTypeOfStep(self, - step)
        - Get the refinement type, Le-Bail or Rietveld...        		 - source code - -
        - -
        -   - - - - - - -
        offRefinementProcess(self, - myfit, - refinestep)
        - Some Non-Rietveld Refinement process coming up as special treatment...        		 - source code - -
        - -
        -   - - - - - - -
        removeGuideAtStep(self, - strategystep)
        - Tell the client whether the parameters refined in this refine-strategy step ...        		 - source code - -
        - -
        -   - - - - - - -
        setReplaceBackground(self, - on)
        - Set replace background functionality to be on/off...        		 - source code - -
        - -
        - - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - MaxNumRefineGuidesStep = 8 -
        -   - - StepFisrtRietveld = 1 -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - maxnumsteps=None) -
        (Constructor) -

        -         		source code  -
        - - Initialization -
        -
        Overrides: - RefineStrategy.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        _setUpGuideDict(self) -

        -         		source code  -
        - -

        Set up a dictionary for Refine Guide

        - This is the base class for the guide sequence is in default -
        -
        Overrides: - RefineStrategy._setUpGuideDict -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.RefineStrategy-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.RefineStrategy-class.html deleted file mode 100644 index 710b4e30..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.RefineStrategy-class.html +++ /dev/null @@ -1,601 +0,0 @@ - - - - - srrietveld.refinestrategy.RefineStrategy - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refinestrategy :: - Class RefineStrategy - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class RefineStrategy

        source code

        -
        Known Subclasses:
        -
        - CalibratedLebailRefineStrategy, - CalibratedRietveldRefineStrategy, - CalibratedXrayRietveldRefineStrategy, - CalibrationTOFRietveldRefineStrategy, - CalibrationXrayRietveldRefineStrategy, - CloseRietveldRefineStrategy, - SctrachLebailRefineStrategy, - UserDefinedRefineStrategy -
        - -
        -
        -Base class for a general refine strategy
-
-Class Variable
-- 
--
--
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - Format output        		 - source code - -
        - -
        -   - - - - - - -
        _setUpGuideDict(self)
        - Set up a dictionary for Refine Guide        		 - source code - -
        - -
        -   - - - - - - -
        getNumRefineGuideSteps(self)
        - Get the number of steps of guided refinement; Notice that in each - guided refinement, there will be more steps according to the specific - RefineGuide        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesOfStep(self, - step)
        - Get the refine guides at a certain step - -Exception: -1.        		 - source code - -
        - -
        -   - - - - - - -
        getRefineGuidesRemovedOfStep(self, - step)
        - Get the RefineGuides to be excluded from the current step...        		 - source code - -
        - -
        -   - - - - - - -
        getRefineTypeOfStep(self, - step)
        - Get the refinement type, Le-Bail or Rietveld...        		 - source code - -
        - -
        -   - - - - - - -
        offRefinementProcess(self, - myfit, - refinestep)
        - Some Non-Rietveld Refinement process coming up as special treatment...        		 - source code - -
        - -
        -   - - - - - - -
        removeGuideAtStep(self, - strategystep)
        - Tell the client whether the parameters refined in this refine-strategy step ...        		 - source code - -
        - -
        -   - - - - - - -
        setReplaceBackground(self, - on)
        - Set replace background functionality to be on/off...        		 - source code - -
        - -
        - - - - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - MaxNumRefineGuidesStep = 20 -
        -   - - StepFisrtRietveld = 6 -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        _setUpGuideDict(self) -

        -         		source code  -
        - -

        Set up a dictionary for Refine Guide

        - This is the base class for the guide sequence is in default -
        -
        -
        -
        - -
        - -
        - - -
        -

        getNumRefineGuideSteps(self) -

        -         		source code  -
        - -

        Get the number of steps of guided refinement; Notice that in each - guided refinement, there will be more steps according to the specific - RefineGuide

        - Return : int -
        -
        -
        -
        - -
        - -
        - - -
        -

        getRefineGuidesOfStep(self, - step) -

        -         		source code  -
        - - 
        -
-Get the refine guides at a certain step
-
-Exception:
-1. if there is no RefineGuide specified at this step
-
-Argument:
-- step  :   int
-
-Return  :   list of tuple (RefineGuides, Stage)
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getRefineGuidesRemovedOfStep(self, - step) -

        -         		source code  -
        - - 
        -
-Get the RefineGuides to be excluded from the current step
-
-Argument:
-- step  :   int
-
-Return  :   list of 2-tuple (RefineGuide, int stage)
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getRefineTypeOfStep(self, - step) -

        -         		source code  -
        - - 
        -
-Get the refinement type, Le-Bail or Rietveld
-
-Argument:
-- step  :   integer, number of RefineGuide
-
-Return  :   str, 'rietveld' or 'lebail'
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        offRefinementProcess(self, - myfit, - refinestep) -

        -         		source code  -
        - - 
        -
-Some Non-Rietveld Refinement process coming up as special treatment
-
-Arguments:
-- myfit     :   diffpy.rietveldapi.Fit instance
-- refinestep:   integer
-
-Return      :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        removeGuideAtStep(self, - strategystep) -

        -         		source code  -
        - - 
        -
-Tell the client whether the parameters refined in this refine-strategy step 
-should be refined again in the following steps
-
-Arguement:
-- strategstep   :   int
-
-Return          :   boolean
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        setReplaceBackground(self, - on) -

        -         		source code  -
        - - 
        -
-Set replace background functionality to be on/off
-
-Argument:
-- on    :   boolean
-
-Return  :   None
-
-
        -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:23 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.SctrachLebailRefineStrategy-class.html b/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.SctrachLebailRefineStrategy-class.html deleted file mode 100644 index 8ae1d271..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.refinestrategy.SctrachLebailRefineStrategy-class.html +++ /dev/null @@ -1,415 +0,0 @@ - - - - - srrietveld.refinestrategy.SctrachLebailRefineStrategy - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module refinestrategy :: - Class SctrachLebailRefineStrategy - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class SctrachLebailRefineStrategy

        source code

        -
        -RefineStrategy --+
-                 |
-                SctrachLebailRefineStrategy
-
        - -
        -Refine strategy only do Le-Bail refinement from scratch (starting - value can be far away from correct value)

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
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        -   - - - - - - -
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        - Get the number of steps of guided refinement; Notice that in each - guided refinement, there will be more steps according to the specific - RefineGuide        		 - source code - -
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        - Get the refine guides at a certain step - -Exception: -1.        		 - source code - -
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        - Get the refinement type, Le-Bail or Rietveld...        		 - source code - -
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        - Tell the client whether the parameters refined in this refine-strategy step ...        		 - source code - -
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        Class UserDefinedRefineStrategy

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        -
        -RefineStrategy --+
-                 |
-                UserDefinedRefineStrategy
-
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        -Extending RefineStrategy to accept user defined strategy

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        - Overriding base class method        		 - source code - -
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        - Overriding base class method        		 - source code - -
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        - From the RefineGuide's name to get the RefineGuide's object in this object...        		 - source code - -
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        -   - - - - - - -
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        getNumRefineGuideSteps(self)
        - Get the number of steps of guided refinement; Notice that in each - guided refinement, there will be more steps according to the specific - RefineGuide        		 - source code - -
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        -   - - - - - - -
        getRefineGuidesOfStep(self, - step)
        - Get the refine guides at a certain step - -Exception: -1.        		 - source code - -
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        getRefineGuidesRemovedOfStep(self, - step)
        - Get the RefineGuides to be excluded from the current step...        		 - source code - -
        - -
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        offRefinementProcess(self, - myfit, - refinestep)
        - Some Non-Rietveld Refinement process coming up as special treatment...        		 - source code - -
        - -
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        removeGuideAtStep(self, - strategystep)
        - Tell the client whether the parameters refined in this refine-strategy step ...        		 - source code - -
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        - Set replace background functionality to be on/off...        		 - source code - -
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            Inherited from RefineStrategy
        -   - - MaxNumRefineGuidesStep = 20 -
        -   - - StepFisrtRietveld = 6 -
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        -
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        __init__(self, - userdefinedstrategydict) -
        (Constructor) -

        -         		source code  -
        - - 
        -
-Initialization
-
-Argument:
-- userdefinedstrategydict   :   dictionary for 2-tuple:  (str, int)
-                                str:        refine guide's name
-                                int/None:   stage
-
-
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        -         		source code  -
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        Overriding base class method

        - Requirement on self._userdefinedstrategydict: dictionary with value - as list of strings -
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        getRefineTypeOfStep(self, - step) -

        -         		source code  -
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        mapNameRefineGuide(self, - rguidename) -

        -         		source code  -
        - - 
        -
-From the RefineGuide's name to get the RefineGuide's object in this object
-
-Assumption all the names are the class name
-
-Arguments:
-- rguidename    :   str
-
-Return          :   RefineGuide instance
-
-
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        Module sequentialrefinecontrol

        source code

        -
        -
-Sequential refinement controller
-
-Created On  2008.08.18
-        By  W. Zhou
-
-External Methods List:
-        - loadSeqRefineController(savefilename):
-Class   SeqRefineController
-        * Client Methods
-        - __init__
-        - __str__
-        - refine                        :   refine
-        - resetModel
-        - resetInstrument
-        - resetRefineStrategy           :   
-        - save
-        - getFit(self, parval)          :   get Fit instance of an external parval
-        - getParameter(self, parname)   :   post-processing
-        - getEnvironParameterName(self)
-        - getEnvironParameterValues(self)
-
-


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        -   - - __id__ = '$Id: sequentialrefinecontrol.py 2923 2009-03-20 15:5... -
        -   - - _MEMCHECK = False -
        -   - - _SCREENOUTPUT = True -
        -   - - _OUTPUT = True -
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        -<diffpy.srrietveld.refinebackend.RietveldEngine instance at 0xb7ac124c\
->
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        Source Code for Module srrietveld.sequentialrefinecontrol

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2008 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Wenduo Zhou 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14  """ 
- 15  Sequential refinement controller 
- 16   
- 17  Created On  2008.08.18 
- 18          By  W. Zhou 
- 19   
- 20  External Methods List: 
- 21          - loadSeqRefineController(savefilename): 
- 22  Class   SeqRefineController 
- 23          * Client Methods 
- 24          - __init__ 
- 25          - __str__ 
- 26          - refine                        :   refine 
- 27          - resetModel 
- 28          - resetInstrument 
- 29          - resetRefineStrategy           :    
- 30          - save 
- 31          - getFit(self, parval)          :   get Fit instance of an external parval 
- 32          - getParameter(self, parname)   :   post-processing 
- 33          - getEnvironParameterName(self) 
- 34          - getEnvironParameterValues(self) 
- 35  """ 
- 36  __id__ = "$Id: sequentialrefinecontrol.py 2923 2009-03-20 15:51:25Z wdzhou $" 
- 37   
- 38  from    diffpy.srrietveld  import * 
- 39   
- 40  _MEMCHECK = False 
- 41  _SCREENOUTPUT = True 
- 42  _OUTPUT = True 
- 43   
-
         45      """ Sequential refinement controller 
- 46   
- 47      Instantiation: 
- 48      - SeqRefineController(instrument, filenametupleslist, environparname,  
- 49                            structure) 
- 50   
- 51      Class Variables: 
- 52      @  _startFit 
- 53      @  _myInstrument 
- 54      @  _myModel 
- 55      @  _dataSetTupList 
- 56      @  _environparname 
- 57      @  _fitsPool        val = curfit, refinedetail, refinehistory 
- 58      """ 
-
         59 -    def __init__(self, instrument, filenametupleslist, environparname, structure): 
-
         60          """ Initialization 
- 61   
- 62          Argument: 
- 63          - instrument        :   Instrument instance 
- 64          - filenameutplelist :   list of tuples for dict and parameter value 
- 65                                  dict: key = bank id (x-ray: 0).  value = data file name 
- 66          - environparname    :   str, environment parameter name 
- 67          - structure         :   list, of Crystal Phase 
- 68          """ 
- 69          # 1. Get information 
- 70          self._myInstrument = instrument 
- 71          self._myModel = structure[:] 
- 72          self._myRefineStrategy  = None 
- 73          self._dataSetTupList = filenametupleslist 
- 74          self._environparname = environparname 
- 75   
- 76          self._refinebankidlist = [0] 
- 77          self._userrangedict = {} 
- 78          self._excludedregiondict = {} 
- 79          self._backgrounddict = {} 
- 80           
- 81          self.directory = None 
- 82   
- 83          self._fitsPool = {} 
- 84          self._savedfilePool = {} 
- 85   
- 86          # 2. Generate default refine repository and sequence  
- 87          #    sort self._dataSetTupList according to refining direction 
- 88          self._direction = 1 
- 89          self._envvalues = [] 
- 90          self._envvaldatadict = {} 
- 91   
- 92          for datafname, parval in self._dataSetTupList: 
- 93              self._envvalues.append(parval) 
- 94              self._envvaldatadict[parval] = datafname 
- 95   
- 96          self._envvalues.sort() 
- 97          self._refineseqlist = self._envvalues[:] 
- 98   
- 99   
-100          return 
-
        101   
-102   
-
        103 -    def __str__(self): 
-
        104          """ Format output 
-105          """ 
-106          rstring = "" 
-107          rstring = "%-10 Sequence:   Range = (%-15s, %-15s)\n"% \ 
-108              (self._environparname, self._dataSetTupList[0][1], self._dataSetTupList[-1][1]) 
-109   
-110          return rstring 
-
        111   
-112   
-
        113 -    def reset(self): 
-
        114          """ Reset the data set for a new series of fittings 
-115   
-116          Return  :   None 
-117          """ 
-118          self._fitsPool = {} 
-119   
-120          return 
-
        121   
-122   
-
        123 -    def setBankToRefine(self, bankidlist): 
-
        124          """ Set a list of bank to refine 
-125   
-126          Argument: 
-127          - bankidlist    :   list of int 
-128   
-129          Return          :   None 
-130          """ 
-131          if len(bankidlist) >= 1: 
-132              self._refinebankidlist[:] = [] 
-133              for bankid in bankidlist: 
-134                  self._refinebankidlist.append(bankid) 
-135          # END-IF 
-136   
-137          return 
-
        138   
-139       
-
        140 -    def setRefineRange(self, bankid, begin, end): 
-
        141          """ Set the refinement range to the sequential fitting.  
-142          Otherwise, the default will be taken from the intersection of instrument range 
-143          and data range 
-144   
-145          Argument: 
-146          - bankid    :   int 
-147          - begin     :   float 
-148          - end       :   float, begin < end 
-149   
-150          Return      :   None 
-151          """ 
-152          self._userrangedict[bankid] = (begin, end) 
-153   
-154          return 
-
        155   
-156   
-
        157 -    def setBackground(self, bankid = 0, backgroundpoints = None): 
-
        158          """ Set the background points 
-159   
-160          Argument 
-161          - bankid            :   int 
-162          - backgroundpoints  :   list 
-163   
-164          Return              :   None 
-165          """ 
-166          self._backgrounddict[bankid] = backgroundpoints 
-167   
-168          return 
-
        169   
-170   
-
        171 -    def setExcludedRegion(self, bankid = 0, excludedregions = None): 
-
        172          """ Set the excluded regions to a certain bank 
-173   
-174          Argument: 
-175          - bankid    :   int 
-176          - excludedregions   :   list of 2-tuple (begin, end) 
-177   
-178          Return      :   None 
-179          """ 
-180          if not self._excludedregiondict.has_key(bankid): 
-181              self._excludedregiondict[bankid] = [] 
-182   
-183          self._excludedregiondict[bankid].extend(excludedregions) 
-184   
-185          return 
-
        186   
-187   
-
        188 -    def setRefineControl(self, direction, startvalue, datasetnumber=None): 
-
        189          """ Set the direction of sequential refinement, increment or decrement 
-190   
-191          Argument: 
-192          - direction     :   str, direction: I (increase), D (decrease) and B (Bidirection) 
-193          - startvalue    :   float, starting value of the environment parameter 
-194          - datasetnumber :   int, number of data set to refine 
-195   
-196          Return      :   None 
-197          """ 
-198          # 1. Set up direction 
-199          if isinstance(direction, int): 
-200              self._direction = direction 
-201          else: 
-202              errmsg = "Refine Direction %-10 Unrecogizable"% (direction) 
-203              raise FitConfigurationError(errmsg) 
-204   
-205          # 2. Set up starting value 
-206          import bisect 
-207          leftindex = bisect.bisect_left(self._envvalues, startvalue) 
-208          if leftindex == 0: 
-209              startindex = 0 
-210          elif leftindex == len(self._envvalues)-1: 
-211              startindex = leftindex 
-212          elif leftindex >= len(self._envvalues): 
-213              startindex = len(self._envvalues)-1 
-214          else: 
-215              if (self._envvalues[leftindex]-startvalue <  
-216                      startvalue-self._envvalues[leftindex-1]): 
-217                  startindex = leftindex 
-218              else: 
-219                  startindex = leftindex-1 
-220              # END-IF-ELSE 
-221          # END-IF-ELSE 
-222   
-223          # 3. Create refine list 
-224          if datasetnumber is None: 
-225              datasetnumber = len(self._envvalues) 
-226   
-227          if direction > 0: 
-228              # increase list 
-229              endindex = startindex+datasetnumber 
-230              if endindex >= len(self._envvalues): 
-231                  self._refineseqlist = self._envvalues[startindex:] 
-232              else: 
-233                  self._refineseqlist = self._envvalues[startindex:endindex] 
-234              # END-IF-ELSE 
-235   
-236          elif direction < 0: 
-237              # decrease list 
-238              endindex = startindex-datasetnumber 
-239              if endindex < 0: 
-240                      endindex = 0 
-241              self._refineseqlist = self._envvalues[endindex:startindex+1] 
-242              self._refineseqlist.sort(reverse=True) 
-243          else: 
-244              # Bi-direction 
-245              errmsg = "Case %-5s Cannot Be Handled Now!  Contact Developer Pelease"% (d) 
-246              raise NotImplementedError, errmsg 
-247          # END-IF-ELSE 
-248   
-249          return 
-
        250   
-251   
-
        252 -    def refine(self, savefname="tempseq.proj"): 
-
        253          """ Sequential refinement with a predetermined sequence; 
-254          Optionally the intermediate result will be saved 
-255   
-256          default: acsending 
-257   
-258          Argument: 
-259          - savefname :   str 
-260   
-261          Return      :   None 
-262          """ 
-263          import copy 
-264          import os 
-265          import refinestrategy   as RS 
-266          import refinemanager    as RM 
-267          import midscript        as MS 
-268          import phasescript      as PU 
-269          import diffpy.pyfullprof.Fit as FPF 
-270   
-271          # 1. prepare and set intermittent output  
-272          loopid    = 0 
-273          processid = RM.getProcessID() 
-274          self.directory = "seq"+processid 
-275          os.mkdir(self.directory) 
-276          os.mkdir(self.directory+"/FP") 
-277          os.mkdir(self.directory+"/Proj") 
-278   
-279          if _MEMCHECK is True: 
-280              import monitormem as MM 
-281              memory_mon = MM.MemoryMonitor() 
-282              memory_mon.record(0.5) 
-283          # END-IF MEMCHECK 
-284   
-285          # 2. refine 
-286          # 2.0 Generate starting Fit 
-287          self.genStartFit() 
-288   
-289          prevfit = None 
-290          for parvalue in self._refineseqlist: 
-291               
-292              # 2.0 Control-value update 
-293              loopid += 1 
-294   
-295              if _MEMCHECK is True: 
-296                  memory_mon.record(loopid) 
-297              # END-IF MEMCHECK 
-298   
-299              # 2.1 Get new Fit, map phase 
-300              curfit    = copy.deepcopy(self._startFit) 
-301              if prevfit is not None: 
-302                  MS.mapStructure(prevfit, curfit) 
-303   
-304              if _MEMCHECK is True: 
-305                  memory_mon.record(loopid+0.2) 
-306                  memory_mon.register(curfit) 
-307                  memory_mon.register(curfit._srfit) 
-308              # END-IF MEMCHECK 
-309   
-310              # 2.2 Load Data 
-311              datafnamedict = self._envvaldatadict[parvalue] 
-312              for bankid in datafnamedict.keys(): 
-313                  MS.reloadData(curfit, datafnamedict[bankid], bankid) 
-314   
-315              if _MEMCHECK is True: 
-316                  memory_mon.record(loopid+0.4) 
-317              # END-IF MEMCHECK 
-318   
-319              # 2.3 Set up RefineManager and Refinement Strategy 
-320              myrefinemanager = RM.MultiStepRefineManager(curfit) 
-321              if self._myRefineStrategy is None: 
-322                  # using default refine strategy 
-323                  raise NotImplementedError("Contact developer to deal with this situation") 
-324                  self._myRefineStrategy = RS.RefineStrategy() 
-325   
-326              # 2.4 Refine and update current-Fit 
-327              refinedetail, processid = myrefinemanager.refine(self._myRefineStrategy) 
-328   
-329              # 2.5   Save refinement result for this step 
-330              # 2.5.1 Export phases parameters 
-331              # FIXME - Assume that all patterns have the same phases 
-332              component = curfit.getComponent(0) 
-333              numphases = component.getNumPhases() 
-334              phasedictlist = [] 
-335              for pindex in xrange(numphases): 
-336                  phase = component.getPhase(pindex) 
-337                  phasedict = PU.genPhaseDict(phase) 
-338                  phasedictlist.append(phasedict) 
-339   
-340              # 2.5.2 Save refinement manager to (1) project file (2) engine file (e.g., pcr, exp) 
-341              refinefilename = "refine"+str(parvalue)+".proj" 
-342              myrefinemanager.save(refinefilename) 
-343   
-344              enginefilename = "" 
-345              if isinstance(curfit, FPF.Fit): 
-346                  enginefilename = "refine" + str(parvalue) + ".pcr" 
-347                  curfit.saveToEngineFile(enginefilename) 
-348   
-349              # 2.5.3 Save into Fits Pool: save the Fit instance  
-350              refinehistory = myrefinemanager.getHistory() 
-351                 
-352              self._fitsPool[parvalue] = (curfit, refinedetail, refinehistory, phasedictlist) 
-353              self._savedfilePool[parvalue] = (refinefilename, enginefilename) 
-354   
-355              # 2.5.4 Remove data from saved Fit 
-356              rietnum = curfit.getNumComponents() 
-357              for cindex in xrange(rietnum): 
-358                  component = curfit.getComponent(cindex) 
-359                  pattern   = component.getPattern() 
-360                  pattern.unloadData() 
-361   
-362              # 2.5.5 Update the loop variables 
-363              prevfit = curfit 
-364              myrefinemanager = None 
-365   
-366              if _MEMCHECK is True: 
-367                  memory_mon.record(loopid+0.6) 
-368              # END-IF MEMCHECK 
-369   
-370              # 2.6 move directory to respository 
-371              cmd = "mv %-20s %-20s"% (processid, self.directory) 
-372              os.system(cmd) 
-373              cmd = "mv %-20s %-20s"% (refinefilename, self.directory+"/Proj") 
-374              os.system(cmd) 
-375              if isinstance(curfit, FPF.Fit): 
-376                  cmd = "mv %-20s %-20s"% (enginefilename, self.directory+"/FP") 
-377                  os.system(cmd) 
-378   
-379              # 2.7 Optional Output 
-380              if _SCREENOUTPUT is True: 
-381                  print "\n*********************   Sequential Refine Summary  ******************************" 
-382                  print "%-15s   %-60s"% (parvalue, refinedetail) 
-383                  print "***********************************************************************************\n" 
-384   
-385              if _MEMCHECK is True: 
-386                  memory_mon.record(loopid+0.8) 
-387              # END-IF 
-388   
-389          # LOOP-OVER: for tup in self._dataSetTupList 
-390   
-391          if _MEMCHECK is True: 
-392              memory_mon.record(loopid+1.0) 
-393          # END-IF 
-394   
-395          return 
-
        396   
-397      # END-DEF refine(self, savefname="tempseq.proj") 
-398   
-399   
-
        400 -    def getFit(self, parval): 
-
        401          """ Get a Fit instance related to an environment parameter value 
-402          if this parameter value is not found, return the one with closest parameter value 
-403   
-404          Argument: 
-405          - parval    :   float 
-406   
-407          Return      :   Fit instance 
-408          """ 
-409          if self._fitsPool.has_key(parval): 
-410              # 1. Easy to locate parval in fitsPool list 
-411              retFit = self._fitsPool[parval][0] 
-412          else: 
-413              # 2. Find the nearest one 
-414              import bisect 
-415              parvallist = sorted(self._fitsPool.keys()) 
-416              parindex   = bisect.bisect_left(parvallist, parval) 
-417              if parindex == 0 or parindex == len(parvallist)-1: 
-418                  parkey = parvallist[parindex] 
-419              elif parindex == len(parvallist): 
-420                  parkey = parvallist[-1] 
-421              else: 
-422                  if parvallist[parindex]-parval < parval - parvallist[parindex-1]: 
-423                      parkey = parvallist[parindex] 
-424                  else: 
-425                      parkey = parvallist[parindex-1] 
-426                  # END-IF 
-427              # END-IF 
-428   
-429              retFit = self._fitsPool[parkey][0] 
-430          # END-IF 
-431   
-432          return retFit 
-
        433   
-434   
-
        435 -    def getParameter(self, parname): 
-
        436          """ Get the value of some parameter 
-437   
-438          Return  :   3-tuple, list of float, list of str, list of list of float 
-439                      1. list of environmental parameters' values 
-440                      2. list of parameter names in full 
-441                      3. list of list of float, parameter values 
-442                      4. list of list of float, uncertainty 
-443          """ 
-444          # FIXME Now it is only the solution for 1-pattern data, a more elegant solution 
-445          #       is required especially for model only parameters 
-446          UT = myEngine.getRietveldEngineModule("utilities") 
-447   
-448          parvalueslist = sorted(self._fitsPool.keys()) 
-449          rtuplist = [] 
-450          stuplist = [] 
-451   
-452          for parval in parvalueslist: 
-453              parnamelow = parname.lower() 
-454              if ["chi2", "rp", "rwp", "re"].count(parnamelow) == 1: 
-455                  refdetail = self._fitsPool[parval][1] 
-456                  valslist = [refdetail.getResidueValue(-1, patno=0, residname=parnamelow)] 
-457                  sigslist = [] 
-458                  parnameslist = [parname] 
-459   
-460              else: 
-461                  thisfit = self._fitsPool[parval][0] 
-462                  parnameslist, valslist, sigslist = UT.getParameter(thisfit, parname, mode=0) 
-463   
-464              # END-IF 
-465              rtuplist.append(valslist) 
-466              stuplist.append(sigslist) 
-467          # LOOP-OVER: for parval in parvalueslist 
-468   
-469          return (parvalueslist, parnameslist, rtuplist, stuplist) 
-
        470   
-471   
-
        472 -    def resetStructureModel(self, model): 
-
        473          """ Set up the structure model for starting  
-474   
-475          Argument: 
-476          - model :   list of Rietveld.Phase instance 
-477   
-478          Return  :   None 
-479          """ 
-480          errmsg = "Unit Test Required" 
-481          raise NotImplementedError, errmsg 
-482   
-483          self._myModel = model 
-484          self.genStartFit() 
-485   
-486          return 
-
        487   
-488   
-
        489 -    def resetInstrument(self, instrument): 
-
        490          """ Set up the instrument parameters 
-491   
-492          Assumption:  The starting value of instrument can be trusted 
-493   
-494          Argument: 
-495          - instrument    :   diffpy.srrietveld.Instrument instance 
-496   
-497          Return          :   None 
-498          """ 
-499          self._myInstrument = instrument 
-500          self._genStartFit() 
-501   
-502          return 
-
        503   
-504   
-
        505 -    def setRefineStrategy(self, refstr): 
-
        506          """ Reset refinement strategy 
-507   
-508          Arguments: 
-509          - refstr    :   RefineStrategy instance or None 
-510   
-511          Return      :   None 
-512          """ 
-513          self._myRefineStrategy = refstr 
-514   
-515          return 
-
        516   
-517   
-
        518 -    def genStartFit(self):    
-
        519          """ Generate the Fit instance 
-520   
-521          Return  :   None 
-522          """ 
-523          # FIXME - Only support single experiment sequential fitting 
-524   
-525          import midscript as MS 
-526   
-527   
-528          # 1. Set starting file name and check validity 
-529          startfilenamedict = self._dataSetTupList[0][0] 
-530          if not isinstance(startfilenamedict, dict): 
-531              errmsg = "startfilenamedict must be a dict" 
-532              raise NotImplementedError, errmsg 
-533           
-534          # 2. Generate experiement-measurement list by instrument 
-535          expmeasurelist = self._myInstrument.genMeasurement(refinebankidlist = self._refinebankidlist,  
-536                  datafilenamedict = startfilenamedict, userrangedict = self._userrangedict, 
-537                  userexcludedregiondict = self._excludedregiondict, bgpointsdict = self._backgrounddict) 
-538   
-539          # 3. Prepare necessary value 
-540          self._startFit = MS.genFit(self._myInstrument,self._myModel, expmeasurelist) 
-541   
-542          return 
-
        543   
-544   
-
        545 -    def save(self, savefilename): 
-
        546          """ Save self to a pickle file 
-547   
-548          Arguement 
-549          - savefilename  :   str 
-550   
-551          Return          :   None 
-552          """ 
-553          import pickle 
-554          import xmlgenerator as XMLG 
-555          import os 
-556   
-557          # 1. Process names and generate the result directory 
-558          savedirname = savefilename.split(".")[0].strip() 
-559          savexmlname = savedirname+".xml" 
-560          try: 
-561              os.mkdir(savedirname) 
-562          except OSError, err: 
-563              pass 
-564   
-565          # 2. Pickel save 
-566          # FIXME  It will be removed later ... 
-567          if savefilename is None: 
-568              savefilename = str(self._processid) 
-569          elif not isinstance(savefilename, str): 
-570              errmsg = "Input File Name %-20s Is Not String"% (savefilename) 
-571              raise FitConfigurationError(savefilename) 
-572   
-573          pfile = open(savefilename, "w") 
-574          pickle.dump(self, pfile)  
-575          pfile.close() 
-576   
-577          # 3. XML save 
-578          xmldict = {} 
-579          for parval in sorted(self._fitsPool.keys()): 
-580              curfit, refinedetail, refinehistory, phasedictlist = self._fitsPool[parval] 
-581              xmldict[parval] = {} 
-582              xmldict[parval]["Structure"]  = phasedictlist 
-583              xmldict[parval]["RefineInfo"] = refinedetail.toDict() 
-584   
-585              xmldict[parval]["SavedFile"]  = {} 
-586              xmldict[parval]["SavedFile"]["Proj"] = self._savedfilePool[parval][0] 
-587              xmldict[parval]["SavedFile"]["FP"]   = self._savedfilePool[parval][1] 
-588          # LOOP-OVER 
-589   
-590          seqxmlgen = XMLG.SeqFitRecordXMLGenerator(xmldict) 
-591          seqxmlgen.exportXML(savexmlname) 
-592   
-593          cmd = "mv %-10s %-10s"% (savexmlname, savedirname) 
-594          os.system(cmd) 
-595   
-596          # 4. Directory save 
-597   
-598          if self.directory is not None: 
-599              cmd = "mv %-15s %-15s"% (self.directory+"/FP", savedirname) 
-600              os.system(cmd) 
-601   
-602              cmd = "mv %-15s %-15s"% (self.directory+"/Proj", savedirname) 
-603              os.system(cmd) 
-604          # END-IF 
-605   
-606          return 
-
        607   
-608   
-
        609 -    def getEnvironParameterName(self): 
-
        610          """ Get environment parameter name 
-611   
-612          Return  :   str 
-613          """ 
-614          return self._environparname  
-
        615   
-616   
-
        617 -    def getEnvironParameterValues(self): 
-
        618          """ Get all the environment parameter values, and output in a sorted list 
-619   
-620          Return  :   list of float 
-621          """ 
-622          rlist = sorted(self._fitsPool.keys()) 
-623   
-624          return rlist 
-
        625   
-626   
-
        627 -    def getInfoTupleFromParValue(self, parval): 
-
        628          """ Get the Fit information, including Fit instance, refine information 
-629          and multiple-step refine history for a certain value of  
-630          environment parameters 
-631   
-632          Arguement: 
-633          - parval    :   float, environment parameter value 
-634   
-635          Return      :   4-tuple:    1. Float (key value),  
-636                                      2. Fit instance,  
-637                                      3. RefineDetail instance,  
-638                                      4. RefineHistory instance 
-639          """ 
-640          # 1. Obtain list of key values 
-641          keyvalueslist = sorted(self._fitsPool.keys()) 
-642          sindex = 0 
-643          findex = len(keyvalueslist)-1 
-644           
-645          if _OUTPUT is True: 
-646              print "1104:  sindex = %-5s   findex = %-5s"% (sindex, findex) 
-647   
-648          # 2. Search key 
-649          if parval > keyvalueslist[findex]: 
-650              # extreme right 
-651              keyval = keyvalueslist[findex] 
-652          elif parval < keyvalueslist[sindex]: 
-653              # extrem left 
-654              keyval = keyvalueslist[sindex] 
-655          else: 
-656              keyval = parval 
-657           
-658          # 3. Get value 
-659          thefit, thedetail, thehistory = self._fitsPool[keyval] 
-660   
-661          return ( (keyval, thefit, thedetail, thehistory) ) 
-
        662   
-663   
-
        664 -    def update(self): 
-
        665          """ Updating the database/repository after a refinement is finished 
-666   
-667          Argument: 
-668          -  
-669          """ 
-670          # FIXME - It is not implemented b/c the purpose of this method is not clear 
-671          raise NotImplementedError("update() is not implemented") 
-
        672   
-673  # END-CLASS SeqRefineContoller 
-674   
-
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           Home      Trees      Indices      Help   
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        - - Package srrietveld :: - Module sequentialrefinecontrol :: - Class SeqRefineController - - - - - - -
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        [frames] | no frames]
        -
        - -

        Class SeqRefineController

        source code

        -
        -Sequential refinement controller
-
-Instantiation:
-- SeqRefineController(instrument, filenametupleslist, environparname, 
-                      structure)
-
-Class Variables:
-@  _startFit
-@  _myInstrument
-@  _myModel
-@  _dataSetTupList
-@  _environparname
-@  _fitsPool        val = curfit, refinedetail, refinehistory
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - instrument, - filenametupleslist, - environparname, - structure)
        - Initialization - -Argument: -- instrument : Instrument instance -- filenameutplelist : list of tuples for dict and parameter value - dict: key = bank id (x-ray: 0).        		 - source code - -
        - -
        -   - - - - - - -
        __str__(self)
        - Format output        		 - source code - -
        - -
        -   - - - - - - -
        reset(self)
        - Reset the data set for a new series of fittings        		 - source code - -
        - -
        -   - - - - - - -
        setBankToRefine(self, - bankidlist)
        - Set a list of bank to refine...        		 - source code - -
        - -
        -   - - - - - - -
        setRefineRange(self, - bankid, - begin, - end)
        - Set the refinement range to the sequential fitting.        		 - source code - -
        - -
        -   - - - - - - -
        setBackground(self, - bankid=0, - backgroundpoints=None)
        - Set the background points...        		 - source code - -
        - -
        -   - - - - - - -
        setExcludedRegion(self, - bankid=0, - excludedregions=None)
        - Set the excluded regions to a certain bank...        		 - source code - -
        - -
        -   - - - - - - -
        setRefineControl(self, - direction, - startvalue, - datasetnumber=None)
        - Set the direction of sequential refinement, increment or decrement...        		 - source code - -
        - -
        -   - - - - - - -
        refine(self, - savefname='tempseq.proj')
        - Sequential refinement with a predetermined sequence;...        		 - source code - -
        - -
        -   - - - - - - -
        getFit(self, - parval)
        - Get a Fit instance related to an environment parameter value...        		 - source code - -
        - -
        -   - - - - - - -
        getParameter(self, - parname)
        - Get the value of some parameter        		 - source code - -
        - -
        -   - - - - - - -
        resetStructureModel(self, - model)
        - Set up the structure model for starting ...        		 - source code - -
        - -
        -   - - - - - - -
        resetInstrument(self, - instrument)
        - Set up the instrument parameters...        		 - source code - -
        - -
        -   - - - - - - -
        setRefineStrategy(self, - refstr)
        - Reset refinement strategy...        		 - source code - -
        - -
        -   - - - - - - -
        genStartFit(self)
        - Generate the Fit instance        		 - source code - -
        - -
        -   - - - - - - -
        save(self, - savefilename)
        - Save self to a pickle file...        		 - source code - -
        - -
        -   - - - - - - -
        getEnvironParameterName(self)
        - Get environment parameter name        		 - source code - -
        - -
        -   - - - - - - -
        getEnvironParameterValues(self)
        - Get all the environment parameter values, and output in a sorted - list        		 - source code - -
        - -
        -   - - - - - - -
        getInfoTupleFromParValue(self, - parval)
        - Get the Fit information, including Fit instance, refine information -and multiple-step refine history for a certain value of -environment parameters - -Arguement: -- parval : float, environment parameter value - -Return : 4-tuple: 1.        		 - source code - -
        - -
        -   - - - - - - -
        update(self)
        - Updating the database/repository after a refinement is finished...        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - instrument, - filenametupleslist, - environparname, - structure) -
        (Constructor) -

        -         		source code  -
        - - 
        -Initialization
-
-Argument:
-- instrument        :   Instrument instance
-- filenameutplelist :   list of tuples for dict and parameter value
-                        dict: key = bank id (x-ray: 0).  value = data file name
-- environparname    :   str, environment parameter name
-- structure         :   list, of Crystal Phase
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        reset(self) -

        -         		source code  -
        - -

        Reset the data set for a new series of fittings

        - Return : None -
        -
        -
        -
        - -
        - -
        - - -
        -

        setBankToRefine(self, - bankidlist) -

        -         		source code  -
        - - 
        -Set a list of bank to refine
-
-Argument:
-- bankidlist    :   list of int
-
-Return          :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        setRefineRange(self, - bankid, - begin, - end) -

        -         		source code  -
        - - 
        -Set the refinement range to the sequential fitting. 
-Otherwise, the default will be taken from the intersection of instrument range
-and data range
-
-Argument:
-- bankid    :   int
-- begin     :   float
-- end       :   float, begin < end
-
-Return      :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        setBackground(self, - bankid=0, - backgroundpoints=None) -

        -         		source code  -
        - - 
        -Set the background points
-
-Argument
-- bankid            :   int
-- backgroundpoints  :   list
-
-Return              :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        setExcludedRegion(self, - bankid=0, - excludedregions=None) -

        -         		source code  -
        - - 
        -Set the excluded regions to a certain bank
-
-Argument:
-- bankid    :   int
-- excludedregions   :   list of 2-tuple (begin, end)
-
-Return      :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        setRefineControl(self, - direction, - startvalue, - datasetnumber=None) -

        -         		source code  -
        - - 
        -Set the direction of sequential refinement, increment or decrement
-
-Argument:
-- direction     :   str, direction: I (increase), D (decrease) and B (Bidirection)
-- startvalue    :   float, starting value of the environment parameter
-- datasetnumber :   int, number of data set to refine
-
-Return      :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        refine(self, - savefname='tempseq.proj') -

        -         		source code  -
        - - 
        -Sequential refinement with a predetermined sequence;
-Optionally the intermediate result will be saved
-
-default: acsending
-
-Argument:
-- savefname :   str
-
-Return      :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getFit(self, - parval) -

        -         		source code  -
        - - 
        -Get a Fit instance related to an environment parameter value
-if this parameter value is not found, return the one with closest parameter value
-
-Argument:
-- parval    :   float
-
-Return      :   Fit instance
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getParameter(self, - parname) -

        -         		source code  -
        - -

        Get the value of some parameter

        - Return : 3-tuple, list of float, list of str, list of list of - float -
          -
        1. - list of environmental parameters' values -
          2. -
        2. - list of parameter names in full -
          3. -
        3. - list of list of float, parameter values -
          4. -
        4. - list of list of float, uncertainty -
          5. -
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        resetStructureModel(self, - model) -

        -         		source code  -
        - - 
        -Set up the structure model for starting 
-
-Argument:
-- model :   list of Rietveld.Phase instance
-
-Return  :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        resetInstrument(self, - instrument) -

        -         		source code  -
        - - 
        -Set up the instrument parameters
-
-Assumption:  The starting value of instrument can be trusted
-
-Argument:
-- instrument    :   diffpy.srrietveld.Instrument instance
-
-Return          :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        setRefineStrategy(self, - refstr) -

        -         		source code  -
        - - 
        -Reset refinement strategy
-
-Arguments:
-- refstr    :   RefineStrategy instance or None
-
-Return      :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        genStartFit(self) -

        -         		source code  -
        - -

        Generate the Fit instance

        - Return : None -
        -
        -
        -
        - -
        - -
        - - -
        -

        save(self, - savefilename) -

        -         		source code  -
        - - 
        -Save self to a pickle file
-
-Arguement
-- savefilename  :   str
-
-Return          :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getEnvironParameterName(self) -

        -         		source code  -
        - -

        Get environment parameter name

        - Return : str -
        -
        -
        -
        - -
        - -
        - - -
        -

        getEnvironParameterValues(self) -

        -         		source code  -
        - -

        Get all the environment parameter values, and output in a sorted - list

        - Return : list of float -
        -
        -
        -
        - -
        - -
        - - -
        -

        getInfoTupleFromParValue(self, - parval) -

        -         		source code  -
        - - 
        -Get the Fit information, including Fit instance, refine information
-and multiple-step refine history for a certain value of 
-environment parameters
-
-Arguement:
-- parval    :   float, environment parameter value
-
-Return      :   4-tuple:    1. Float (key value), 
-                            2. Fit instance, 
-                            3. RefineDetail instance, 
-                            4. RefineHistory instance
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        update(self) -

        -         		source code  -
        - - 
        -Updating the database/repository after a refinement is finished
-
-Argument:
-- 
-
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        - - Package srrietveld :: - Module spacegroupinfo - - - - - - -
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        -
        - -

        Module spacegroupinfo

        source code

        - - - - - - - - - -
        - - - - - -
        Functions[hide private]
        -
        -   - - - - - - -
        getCrystalSystemFromSpaceGroup(spcgrp)
        - map the space group to a crystal system, which must be ...        		 - source code - -
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        Variables[hide private]
        -
        -   - - __id__ = '$Id: spacegroupinfo.py 2792 2009-03-02 15:56:43Z wdz... -
        -   - - CystalStructureNameDict = {1: 'Triclinic', 2: 'Monoclinic', 3:... -
        -   - - SpacegroupIDDict = {1: ('P 1', 1), 2: ('P -1', 1), 3: ('P 2', ... -
        -   - - SpacegroupNameDict = {'A b a 2': (41, 3), 'A b m 2': (39, 3), ... -
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        Function Details[hide private]
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        getCrystalSystemFromSpaceGroup(spcgrp) -

        -         		source code  -
        - - 
        -
-map the space group to a crystal system, which must be 
-one of the 7 crystla stcture
-
-Argument:
-- spcgrp    :   string, space group
-
-Return      :   string, crystal system
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        __id__

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        -'$Id: spacegroupinfo.py 2792 2009-03-02 15:56:43Z wdzhou $'
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        CystalStructureNameDict

        - -
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        - 
        -{1: 'Triclinic',
- 2: 'Monoclinic',
- 3: 'Orthorhombic',
- 4: 'Tetragonal',
- 5: 'Trigonal',
- 6: 'Hexagonal',
- 7: 'Cubic'}
-
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        SpacegroupIDDict

        - -
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        - 
        -{1: ('P 1', 1),
- 2: ('P -1', 1),
- 3: ('P 2', 2),
- 4: ('P 21', 2),
- 5: ('C 2', 2),
- 6: ('P m', 2),
- 7: ('P c', 2),
- 8: ('C m', 2),
-...
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        SpacegroupNameDict

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        - 
        -{'A b a 2': (41, 3),
- 'A b m 2': (39, 3),
- 'A m a 2': (40, 3),
- 'A m m 2': (38, 3),
- 'C 2': (5, 2),
- 'C 2 2 2': (21, 3),
- 'C 2 2 21': (20, 3),
- 'C 2/c': (15, 2),
-...
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        Source Code for Module srrietveld.spacegroupinfo

        -
        -  1  ################################################################################ 
-  2  # 
-  3  #   space group information, including 2 dictionaries with  
-  4  #   some external functions 
-  5  # 
-  6  #   source from:  
-  7  #   http://leonardo.phys.washington.edu/~ravel/software/doc/Atoms/Atoms/node17.html 
-  8  # 
-  9  #   Created On: 2008.06.28 
- 10  #           By: W. Zhou 
- 11  # 
- 12  ################################################################################ 
- 13   
- 14  __id__ = "$Id: spacegroupinfo.py 2792 2009-03-02 15:56:43Z wdzhou $" 
- 15   
- 16  CystalStructureNameDict = { 
- 17      1: "Triclinic", 
- 18      2: "Monoclinic", 
- 19      3: "Orthorhombic",  
- 20      4: "Tetragonal",  
- 21      5: "Trigonal", 
- 22      6: "Hexagonal",  
- 23      7: "Cubic",  
- 24  } 
- 25   
- 26  SpacegroupIDDict = { 
- 27      1  :    ("P 1" ,   1),       
- 28      2  :    ("P -1",   1),       
- 29      3  :    ("P 2"   , 2), 
- 30      4  :    ("P 21"  , 2), 
- 31      5  :    ("C 2"   , 2), 
- 32      6  :    ("P m"   , 2), 
- 33      7  :    ("P c"   , 2), 
- 34      8  :    ("C m"   , 2), 
- 35      9  :    ("C c"   , 2), 
- 36      10 :    ("P 2/m" , 2),       
- 37      11 :    ("P 21/m", 2),       
- 38      12 :    ("C 2/m" , 2),       
- 39      13 :    ("P 2/c" , 2),       
- 40      14 :    ("P 21/c", 2),       
- 41      15 :    ("C 2/c" , 2),       
- 42      16 :    ("P 2 2 2",   3),  
- 43      17 :    ("P 2 2 21",  3),  
- 44      18 :    ("P 21 21 2", 3),    
- 45      19 :    ("P 21 21 21",3),    
- 46      20 :    ("C 2 2 21",  3), 
- 47      21 :    ("C 2 2 2",   3), 
- 48      22 :    ("F 2 2 2",   3), 
- 49      23 :    ("I 2 2 2",   3), 
- 50      24 :    ("I 21 21 21",3),    
- 51      25 :    ("P m m 2",   3), 
- 52      26 :    ("P m c 21",  3), 
- 53      27 :    ("P c c 2",   3), 
- 54      28 :    ("P m a 2",   3), 
- 55      29 :    ("P c a 21",  3), 
- 56      30 :    ("P n c 2",   3), 
- 57      31 :    ("P m n 21",  3), 
- 58      32 :    ("P b a 2",   3), 
- 59      33 :    ("P n a 21",  3), 
- 60      34 :    ("P n n 2",   3), 
- 61      35 :    ("C m m 2",   3), 
- 62      36 :    ("C m c 21",  3), 
- 63      37 :    ("C c c 2",   3), 
- 64      38 :    ("A m m 2",   3), 
- 65      39 :    ("A b m 2",   3), 
- 66      40 :    ("A m a 2",   3), 
- 67      41 :    ("A b a 2",   3), 
- 68      42 :    ("F m m 2",   3), 
- 69      43 :    ("F d d 2",   3), 
- 70      44 :    ("I m m 2",   3), 
- 71      45 :    ("I b a 2",   3), 
- 72      46 :    ("I m a 2",   3), 
- 73      47 :    ("P m m m",   3), 
- 74      48 :    ("P n n n",   3), 
- 75      49 :    ("P c c m",   3), 
- 76      50 :    ("P b a n",   3), 
- 77      51 :    ("P m m a",   3), 
- 78      52 :    ("P n n a",   3), 
- 79      53 :    ("P m n a",   3), 
- 80      54 :    ("P c c a",   3), 
- 81      55 :    ("P b a m",   3), 
- 82      56 :    ("P c c n",   3), 
- 83      57 :    ("P b c m",   3), 
- 84      58 :    ("P n n m",   3), 
- 85      59 :    ("P m m n",   3), 
- 86      60 :    ("P b c n",   3), 
- 87      61 :    ("P b c a",   3), 
- 88      62 :    ("P n m a",   3), 
- 89      63 :    ("C m c m",   3), 
- 90      64 :    ("C m c a",   3), 
- 91      65 :    ("C m m m",   3), 
- 92      66 :    ("C c c m",   3), 
- 93      67 :    ("C m m a",   3), 
- 94      68 :    ("C c c a",   3), 
- 95      69 :    ("F m m m",   3), 
- 96      70 :    ("F d d d",   3), 
- 97      71 :    ("I m m m",   3), 
- 98      72 :    ("I b a m",   3), 
- 99      73 :    ("I b c a",   3), 
-100      74 :    ("I m m a",   3), 
-101      75 :    ("P 4"      , 4), 
-102      76 :    ("P 41"     , 4), 
-103      77 :    ("P 42"     , 4), 
-104      78 :    ("P 43"     , 4), 
-105      79 :    ("I 4"      , 4), 
-106      80 :    ("I 41"     , 4), 
-107      81 :    ("P -4"     , 4), 
-108      82 :    ("I -4"     , 4), 
-109      83 :    ("P 4/m"    , 4), 
-110      84 :    ("P 42/m"   , 4), 
-111      85 :    ("P 4/n"    , 4), 
-112      86 :    ("P 42/n"   , 4), 
-113      87 :    ("I 4/m"    , 4), 
-114      88 :    ("I 41/a"   , 4), 
-115      89 :    ("P 4 2 2"  , 4), 
-116      90 :    ("P 4 21 2" , 4), 
-117      91 :    ("P 41 2 2" , 4), 
-118      92 :    ("P 41 21 2", 4),    
-119      93 :    ("P 42 2 2" , 4), 
-120      94 :    ("P 42 21 2", 4),    
-121      95 :    ("P 43 2 2" , 4), 
-122      96 :    ("P 43 21 2", 4),    
-123      97 :    ("I 4 2 2"  , 4), 
-124      98 :    ("I 41 2 2" , 4), 
-125      99 :    ("P 4 m m"  , 4), 
-126      100:    ("P 4 b m"  , 4), 
-127      101:    ("P 42 c m" , 4), 
-128      102:    ("P 42 n m" , 4), 
-129      103:    ("P 4 c c"  , 4), 
-130      104:    ("P 4 n c"  , 4), 
-131      105:    ("P 42 m c" , 4), 
-132      106:    ("P 42 b c" , 4), 
-133      107:    ("I 4 m m"  , 4), 
-134      108:    ("I 4 c m"  , 4), 
-135      109:    ("I 41 m d" , 4), 
-136      110:    ("I 41 c d" , 4), 
-137      111:    ("P -4 2 m" , 4), 
-138      112:    ("P -4 2 c" , 4), 
-139      113:    ("P -4 21 m", 4),    
-140      114:    ("P -4 21 c", 4),    
-141      115:    ("P -4 m 2" , 4), 
-142      116:    ("P -4 c 2" , 4), 
-143      117:    ("P -4 b 2" , 4), 
-144      118:    ("P -4 n 2" , 4), 
-145      119:    ("I -4 m 2" , 4), 
-146      120:    ("I -4 c 2" , 4), 
-147      121:    ("I -4 2 m" , 4), 
-148      122:    ("I -4 2 d" , 4), 
-149      123:    ("P 4/m m m", 4),    
-150      124:    ("P 4/m c c", 4),    
-151      125:    ("P 4/n b m", 4),    
-152      126:    ("P 4/n n c", 4),    
-153      127:    ("P 4/m b m", 4),    
-154      128:    ("P 4/m n c", 4),    
-155      129:    ("P 4/n m m", 4),    
-156      130:    ("P 4/n c c", 4),    
-157      131:    ("P 42/m m c", 4),   
-158      132:    ("P 42/m c m", 4),   
-159      133:    ("P 42/n b c", 4),   
-160      134:    ("P 42/n n m", 4),   
-161      135:    ("P 42/m b c", 4),   
-162      136:    ("P 42/m n m", 4),   
-163      137:    ("P 42/n m c", 4),   
-164      138:    ("P 42/n c m", 4),   
-165      139:    ("I 4/m m m" , 4),   
-166      140:    ("I 4/m c m" , 4),   
-167      141:    ("I 41/a m d", 4),   
-168      142:    ("I 41/a c d", 4),   
-169      143:    ("P 3",         5), 
-170      144:    ("P 31",        5), 
-171      145:    ("P 32",        5), 
-172      146:    ("R 3",         5), 
-173      147:    ("P -3",        5), 
-174      148:    ("R -3",        5), 
-175      149:    ("P 3 1 2",     5), 
-176      150:    ("P 3 2 1",     5), 
-177      151:    ("P 31 1 2",    5), 
-178      152:    ("P 31 2 1",    5), 
-179      153:    ("P 32 1 2",    5), 
-180      154:    ("P 32 2 1",    5), 
-181      155:    ("R 3 2",       5), 
-182      156:    ("P 3 m 1",     5), 
-183      157:    ("P 3 1 m",     5), 
-184      158:    ("P 3 c 1",     5), 
-185      159:    ("P 3 1 c",     5), 
-186      160:    ("R 3 m",       5),        
-187      161:    ("R 3 c",       5),        
-188      162:    ("P -3 1 m",    5), 
-189      163:    ("P -3 1 C",    5), 
-190      164:    ("P -3 m 1",    5), 
-191      165:    ("P -3 c 1",    5), 
-192      166:    ("R -3 m",      5), 
-193      167:    ("R -3 c",      5), 
-194      168:    ("P 6",         6), 
-195      169:    ("P 61",        6), 
-196      170:    ("P 65",        6), 
-197      171:    ("P 62",        6), 
-198      172:    ("P 64",        6), 
-199      173:    ("P 63",        6), 
-200      174:    ("P -6",        6), 
-201      175:    ("P 6/m",       6), 
-202      176:    ("P 63/M",      6), 
-203      177:    ("P 6 2 2",     6), 
-204      178:    ("P 61 2 2",    6), 
-205      179:    ("P 65 2 2",    6), 
-206      180:    ("P 62 2 2",    6), 
-207      181:    ("P 64 2 2",    6), 
-208      182:    ("P 63 2 2",    6), 
-209      183:    ("P 6 m m" ,    6), 
-210      184:    ("P 6 c c" ,    6), 
-211      185:    ("P 63 c m",    6), 
-212      186:    ("P 63 m c",    6), 
-213      187:    ("P -6 m 2",    6), 
-214      188:    ("P -6 c 2",    6), 
-215      189:    ("P -6 2 m",    6), 
-216      190:    ("P -6 2 c",    6), 
-217      191:    ("P 6/m m m",   6),        
-218      192:    ("P 6/m c c",   6),        
-219      193:    ("P 63/m c m",  6),  
-220      194:    ("P 63/m m c",  6),  
-221      195:    ("P 2 3"    ,   7),          
-222      196:    ("F 2 3"    ,   7),          
-223      197:    ("I 2 3"    ,   7),          
-224      198:    ("P 21 3"   ,   7),          
-225      199:    ("I 21 3"   ,   7),          
-226      200:    ("P m -3"   ,   7),          
-227      201:    ("P n -3"   ,   7),          
-228      202:    ("F m -3"   ,   7),          
-229      203:    ("F d -3"   ,   7),          
-230      204:    ("I m -3"   ,   7),          
-231      205:    ("P a -3"   ,   7),          
-232      206:    ("I a -3"   ,   7),          
-233      207:    ("P 4 3 2"  ,   7),          
-234      208:    ("P 42 3 2" ,   7),          
-235      209:    ("F 4 3 2"  ,   7),          
-236      210:    ("F 41 3 2" ,   7), 
-237      211:    ("I 4 3 2"  ,   7),  
-238      212:    ("P 43 3 2" ,   7),          
-239      213:    ("P 41 3 2" ,   7),          
-240      214:    ("I 41 3 2" ,   7),          
-241      215:    ("P -4 3 m" ,   7),          
-242      216:    ("F -4 3 m" ,   7),          
-243      217:    ("I -4 3 m" ,   7),          
-244      218:    ("P -4 3 n" ,   7),          
-245      219:    ("F -4 3 c" ,   7),          
-246      220:    ("I -4 3 d" ,   7),          
-247      221:    ("P m -3 m" ,   7),          
-248      222:    ("P n -3 n" ,   7),          
-249      223:    ("P m -3 n" ,   7),          
-250      224:    ("P n -3 m" ,   7),          
-251      225:    ("F m -3 m" ,   7),          
-252      226:    ("F m -3 c" ,   7),          
-253      227:    ("F d -3 m" ,   7),          
-254      228:    ("F d -3 c" ,   7),          
-255      229:    ("I m -3 m" ,   7),          
-256      230:    ("I a -3 d" ,   7),          
-257  } 
-258  SpacegroupNameDict = { 
-259      "P 1"             :   (1  , 1),      
-260      "P -1"            :   (2  , 1),      
-261      "P 2"             :   (3  , 2), 
-262      "P 21"            :   (4  , 2), 
-263      "C 2"             :   (5  , 2), 
-264      "P m"             :   (6  , 2), 
-265      "P c"             :   (7  , 2), 
-266      "C m"             :   (8  , 2), 
-267      "C c"             :   (9  , 2), 
-268      "P 2/m"           :   (10 , 2),      
-269      "P 21/m"          :   (11 , 2),      
-270      "C 2/m"           :   (12 , 2),      
-271      "P 2/c"           :   (13 , 2),      
-272      "P 21/c"          :   (14 , 2),      
-273      "C 2/c"           :   (15 , 2),      
-274      "P 2 2 2"         :   (16 , 3),  
-275      "P 2 2 21"        :   (17 , 3),  
-276      "P 21 21 2"       :   (18 , 3),      
-277      "P 21 21 21"      :   (19 , 3),      
-278      "C 2 2 21"        :   (20 , 3), 
-279      "C 2 2 2"         :   (21 , 3), 
-280      "F 2 2 2"         :   (22 , 3), 
-281      "I 2 2 2"         :   (23 , 3), 
-282      "I 21 21 21"      :   (24 , 3),      
-283      "P m m 2"         :   (25 , 3), 
-284      "P m c 21"        :   (26 , 3), 
-285      "P c c 2"         :   (27 , 3), 
-286      "P m a 2"         :   (28 , 3), 
-287      "P c a 21"        :   (29 , 3), 
-288      "P n c 2"         :   (30 , 3), 
-289      "P m n 21"        :   (31 , 3), 
-290      "P b a 2"         :   (32 , 3), 
-291      "P n a 21"        :   (33 , 3), 
-292      "P n n 2"         :   (34 , 3), 
-293      "C m m 2"         :   (35 , 3), 
-294      "C m c 21"        :   (36 , 3), 
-295      "C c c 2"         :   (37 , 3), 
-296      "A m m 2"         :   (38 , 3), 
-297      "A b m 2"         :   (39 , 3), 
-298      "A m a 2"         :   (40 , 3), 
-299      "A b a 2"         :   (41 , 3), 
-300      "F m m 2"         :   (42 , 3), 
-301      "F d d 2"         :   (43 , 3), 
-302      "I m m 2"         :   (44 , 3), 
-303      "I b a 2"         :   (45 , 3), 
-304      "I m a 2"         :   (46 , 3), 
-305      "P m m m"         :   (47 , 3), 
-306      "P n n n"         :   (48 , 3), 
-307      "P c c m"         :   (49 , 3), 
-308      "P b a n"         :   (50 , 3), 
-309      "P m m a"         :   (51 , 3), 
-310      "P n n a"         :   (52 , 3), 
-311      "P m n a"         :   (53 , 3), 
-312      "P c c a"         :   (54 , 3), 
-313      "P b a m"         :   (55 , 3), 
-314      "P c c n"         :   (56 , 3), 
-315      "P b c m"         :   (57 , 3), 
-316      "P n n m"         :   (58 , 3), 
-317      "P m m n"         :   (59 , 3), 
-318      "P b c n"         :   (60 , 3), 
-319      "P b c a"         :   (61 , 3), 
-320      "P n m a"         :   (62 , 3), 
-321      "C m c m"         :   (63 , 3), 
-322      "C m c a"         :   (64 , 3), 
-323      "C m m m"         :   (65 , 3), 
-324      "C c c m"         :   (66 , 3), 
-325      "C m m a"         :   (67 , 3), 
-326      "C c c a"         :   (68 , 3), 
-327      "F m m m"         :   (69 , 3), 
-328      "F d d d"         :   (70 , 3), 
-329      "I m m m"         :   (71 , 3), 
-330      "I b a m"         :   (72 , 3), 
-331      "I b c a"         :   (73 , 3), 
-332      "I m m a"         :   (74 , 3), 
-333      "P 4"             :   (75 , 4), 
-334      "P 41"            :   (76 , 4), 
-335      "P 42"            :   (77 , 4), 
-336      "P 43"            :   (78 , 4), 
-337      "I 4"             :   (79 , 4), 
-338      "I 41"            :   (80 , 4), 
-339      "P -4"            :   (81 , 4), 
-340      "I -4"            :   (82 , 4), 
-341      "P 4/m"           :   (83 , 4), 
-342      "P 42/m"          :   (84 , 4), 
-343      "P 4/n"           :   (85 , 4), 
-344      "P 42/n"          :   (86 , 4), 
-345      "I 4/m"           :   (87 , 4), 
-346      "I 41/a"          :   (88 , 4), 
-347      "P 4 2 2"         :   (89 , 4), 
-348      "P 4 21 2"        :   (90 , 4), 
-349      "P 41 2 2"        :   (91 , 4), 
-350      "P 41 21 2"       :   (92 , 4),      
-351      "P 42 2 2"        :   (93 , 4), 
-352      "P 42 21 2"       :   (94 , 4),      
-353      "P 43 2 2"        :   (95 , 4), 
-354      "P 43 21 2"       :   (96 , 4),      
-355      "I 4 2 2"         :   (97 , 4), 
-356      "I 41 2 2"        :   (98 , 4), 
-357      "P 4 m m"         :   (99 , 4), 
-358      "P 4 b m"         :   (100, 4), 
-359      "P 42 c m"        :   (101, 4), 
-360      "P 42 n m"        :   (102, 4), 
-361      "P 4 c c"         :   (103, 4), 
-362      "P 4 n c"         :   (104, 4), 
-363      "P 42 m c"        :   (105, 4), 
-364      "P 42 b c"        :   (106, 4), 
-365      "I 4 m m"         :   (107, 4), 
-366      "I 4 c m"         :   (108, 4), 
-367      "I 41 m d"        :   (109, 4), 
-368      "I 41 c d"        :   (110, 4), 
-369      "P -4 2 m"        :   (111, 4), 
-370      "P -4 2 c"        :   (112, 4), 
-371      "P -4 21 m"       :   (113, 4),      
-372      "P -4 21 c"       :   (114, 4),      
-373      "P -4 m 2"        :   (115, 4), 
-374      "P -4 c 2"        :   (116, 4), 
-375      "P -4 b 2"        :   (117, 4), 
-376      "P -4 n 2"        :   (118, 4), 
-377      "I -4 m 2"        :   (119, 4), 
-378      "I -4 c 2"        :   (120, 4), 
-379      "I -4 2 m"        :   (121, 4), 
-380      "I -4 2 d"        :   (122, 4), 
-381      "P 4/m m m"       :   (123, 4),      
-382      "P 4/m c c"       :   (124, 4),      
-383      "P 4/n b m"       :   (125, 4),      
-384      "P 4/n n c"       :   (126, 4),      
-385      "P 4/m b m"       :   (127, 4),      
-386      "P 4/m n c"       :   (128, 4),      
-387      "P 4/n m m"       :   (129, 4),      
-388      "P 4/n c c"       :   (130, 4),      
-389      "P 42/m m c"      :   (131, 4),      
-390      "P 42/m c m"      :   (132, 4),      
-391      "P 42/n b c"      :   (133, 4),      
-392      "P 42/n n m"      :   (134, 4),      
-393      "P 42/m b c"      :   (135, 4),      
-394      "P 42/m n m"      :   (136, 4),      
-395      "P 42/n m c"      :   (137, 4),      
-396      "P 42/n c m"      :   (138, 4),      
-397      "I 4/m m m"       :   (139, 4),      
-398      "I 4/m c m"       :   (140, 4),      
-399      "I 41/a m d"      :   (141, 4),      
-400      "I 41/a c d"      :   (142, 4),      
-401      "P 3"             :   (143, 5), 
-402      "P 31"            :   (144, 5), 
-403      "P 32"            :   (145, 5), 
-404      "R 3"             :   (146, 5), 
-405      "P -3"            :   (147, 5), 
-406      "R -3"            :   (148, 5), 
-407      "P 3 1 2"         :   (149, 5), 
-408      "P 3 2 1"         :   (150, 5), 
-409      "P 31 1 2"        :   (151, 5), 
-410      "P 31 2 1"        :   (152, 5), 
-411      "P 32 1 2"        :   (153, 5), 
-412      "P 32 2 1"        :   (154, 5), 
-413      "R 3 2"           :   (155, 5), 
-414      "P 3 m 1"         :   (156, 5), 
-415      "P 3 1 m"         :   (157, 5), 
-416      "P 3 c 1"         :   (158, 5), 
-417      "P 3 1 C"         :   (159, 5), 
-418      "R 3 m"           :   (160, 5),        
-419      "R 3 c"           :   (161, 5),        
-420      "P -3 1 m"        :   (162, 5), 
-421      "P -3 1 c"        :   (163, 5), 
-422      "P -3 m 1"        :   (164, 5), 
-423      "P -3 c 1"        :   (165, 5), 
-424      "R -3 m"          :   (166, 5), 
-425      "R -3 c"          :   (167, 5), 
-426      "P 6"             :   (168, 6), 
-427      "P 61"            :   (169, 6), 
-428      "P 65"            :   (170, 6), 
-429      "P 62"            :   (171, 6), 
-430      "P 64"            :   (172, 6), 
-431      "P 63"            :   (173, 6), 
-432      "P -6"            :   (174, 6), 
-433      "P 6/m"           :   (175, 6), 
-434      "P 63/M"          :   (176, 6), 
-435      "P 6 2 2"         :   (177, 6), 
-436      "P 61 2 2"        :   (178, 6), 
-437      "P 65 2 2"        :   (179, 6), 
-438      "P 62 2 2"        :   (180, 6), 
-439      "P 64 2 2"        :   (181, 6), 
-440      "P 63 2 2"        :   (182, 6), 
-441      "P 6 m m"         :   (183, 6), 
-442      "P 6 c c"         :   (184, 6), 
-443      "P 63 c m"        :   (185, 6), 
-444      "P 63 m c"        :   (186, 6), 
-445      "P -6 m 2"        :   (187, 6), 
-446      "P -6 c 2"        :   (188, 6), 
-447      "P -6 2 m"        :   (189, 6), 
-448      "P -6 2 c"        :   (190, 6), 
-449      "P 6/m m m"       :   (191, 6),        
-450      "P 6/m c c"       :   (192, 6),        
-451      "P 63/m c m"      :   (193, 6),      
-452      "P 63/m m c"      :   (194, 6),      
-453      "P 2 3"           :   (195, 7),      
-454      "F 2 3"           :   (196, 7),      
-455      "I 2 3"           :   (197, 7),      
-456      "P 21 3"          :   (198, 7),      
-457      "I 21 3"          :   (199, 7),      
-458      "P m -3"          :   (200, 7),      
-459      "P n -3"          :   (201, 7),      
-460      "F m -3"          :   (202, 7),      
-461      "F d -3"          :   (203, 7),      
-462      "I m -3"          :   (204, 7),      
-463      "P a -3"          :   (205, 7),      
-464      "I a -3"          :   (206, 7),      
-465      "P 4 3 2"         :   (207, 7),      
-466      "P 42 3 2"        :   (208, 7),      
-467      "F 4 3 2"         :   (209, 7),      
-468      "F 41 3 2"        :   (210, 7), 
-469      "I 4 3 2"         :   (211, 7),  
-470      "P 43 3 2"        :   (212, 7),      
-471      "P 41 3 2"        :   (213, 7),      
-472      "I 41 3 2"        :   (214, 7),      
-473      "P -4 3 m"        :   (215, 7),      
-474      "F -4 3 m"        :   (216, 7),      
-475      "I -4 3 m"        :   (217, 7),      
-476      "P -4 3 n"        :   (218, 7),      
-477      "F -4 3 c"        :   (219, 7),      
-478      "I -4 3 d"        :   (220, 7),      
-479      "P m -3 m"        :   (221, 7),      
-480      "P n -3 n"        :   (222, 7),      
-481      "P m -3 n"        :   (223, 7),      
-482      "P n -3 m"        :   (224, 7),      
-483      "F m -3 m"        :   (225, 7),      
-484      "F m -3 c"        :   (226, 7),      
-485      "F d -3 m"        :   (227, 7),      
-486      "F d -3 c"        :   (228, 7),      
-487      "I m -3 m"        :   (229, 7),      
-488      "I a -3 d"        :   (230, 7),      
-489  } 
-490   
-
        492      """ 
-493      map the space group to a crystal system, which must be  
-494      one of the 7 crystla stcture 
-495   
-496      Argument: 
-497      - spcgrp    :   string, space group 
-498   
-499      Return      :   string, crystal system 
-500      """ 
-501      if SpacegroupNameDict.has_key(spcgrp): 
-502          structureID   = SpacegroupNameDict[spcgrp][1] 
-503          structureName = CystalStructureNameDict[structureID] 
-504           
-505      else: 
-506          errmsg = "Space group %-10s is not Recoganized"% (spcgrp) 
-507          raise NotImplementedError(errmsg) 
-508   
-509      return structureName 
-
        510   
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        Module srrietveldconfiguration

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        -check the configuration for diffpy.srrietveld

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        Source Code for Module srrietveld.srrietveldconfiguration

        -
        - 1  #!/usr/bin/env python 
- 2  ############################################################################## 
- 3  # 
- 4  # diffpy.srrietveld by DANSE Diffraction group 
- 5  #                   Simon J. L. Billinge 
- 6  #                   (c) 2008 Trustees of the Columbia University 
- 7  #                   in the City of New York.  All rights reserved. 
- 8  # 
- 9  # File coded by:    Wenduo Zhou 
-10  # 
-11  # See AUTHORS.txt for a list of people who contributed. 
-12  # See LICENSE.txt for license information. 
-13  # 
-14  ############################################################################## 
-15  """ 
-16  check the configuration for diffpy.srrietveld  
-17  """ 
-18  __id__ = "$Id: srrietveldconfiguration.py 2792 2009-03-02 15:56:43Z wdzhou $" 
-19   
-
        20 -def __main__(): 
-
        21      """ 
-22      main function to check all the required and optional package 
-23      """ 
-24      msgs = "" 
-25      msgf = "" 
-26   
-27      # check diffpy.srrietveld Packages 
-28      try: 
-29          import SrRietUI 
-30          msgs += "Required package %-20s is on Python path\n"%("SrRietUI") 
-31      except ImportError, err: 
-32          msgf += "Required package %-20s can not be found on Python path\n"%("SrRietUI") 
-33          msgf += "Error Message: %-60s\n"%(str(err)) 
-34   
-35      try: 
-36          import diffpy.srrietveld 
-37          msgs += "Required package %-20s is on Python path\n"%("SrRietveld") 
-38      except ImportError, err: 
-39          msgf += "Required package %-20s can not be found on Python path\n"%("SrRietveld") 
-40          msgf += "Error Message: %-60s\n"%(str(err)) 
-41   
-42      try: 
-43          import diffpy.refinementapi 
-44          msgs += "Required package %-20s is on Python path\n"%("diffpy.refinementapi") 
-45      except ImportError, err: 
-46          msgf += "Required package %-20s can not be found on Python path\n"%("diffpy.refinementapi") 
-47          msgf += "Error Message: %-60s\n"%(str(err)) 
-48   
-49      try: 
-50          import diffpy.rietveldapi 
-51          msgs += "Required package %-20s is on Python path\n"%("diffpy.rietveldapi") 
-52      except ImportError, err: 
-53          msgf += "Required package %-20s can not be found on Python path\n"%("diffpy.rietveldapi") 
-54          msgf += "Error Message: %-60s\n"%(str(err)) 
-55   
-56      try: 
-57          import pylab 
-58          msgs += "Required package %-20s is on Python path\n"%("pylab") 
-59      except ImportError, err: 
-60          msgf += "Optional package %-20s can not be found on Python path. %30s\n"%("pylab", "No 2D plotting is supported") 
-61          msgf += "Error Message: %-60s\n"%(str(err)) 
-62           
-63      try: 
-64          import diffpy.Structure 
-65          msgs += "Required package %-20s is on Python path\n"%("diffpy.Structure") 
-66      except ImportError, err: 
-67          msgf += "Optional package %-20s can not be found on Python path. \n"%("diffpy.Structure") 
-68          msgf += "Error Message: %-60s\n"%(str(err)) 
-69           
-70      try: 
-71          import StructureViewer 
-72          msgs += "Required package %-20s is on Python path\n"%("StructureViewer") 
-73      except ImportError, err: 
-74          msgf += "Optional package %-20s can not be found on Python path\n"%("StructureViewer") 
-75          msgf += "Error Message: %-60s\n"%(str(err)) 
-76   
-77      # Check Required external packages 
-78      import os 
-79      rlist = os.popen3("which fp2k")[1].readlines() 
-80      raise NotImplementedError("Not using popen(), but Python.dirList()") 
-81   
-82      if len(rlist) == 0: 
-83          msgf += "Error Message: %-30s\n"%("FullProf <fp2k> cannot be found in $PATH.  diffpy.srrietveld cannot be used correctly") 
-84   
-85      print msgs 
-86      print msgf 
-87   
-88      return 
-
        89   
-90   
-91  if __name__ == "__main__": 
-92      __main__() 
-93   
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        Module stringutilfunction

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        -Utility functions for string operation

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        Functions[hide private]
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        - check with string started with a certain head ...        		 - source code - -
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-check with string started with a certain head 
-
-argument
-- s :   string, to be checked
-- h :   string, head
-
-return  --  Boolean
-
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        Source Code for Module srrietveld.stringutilfunction

        -
        - 1  ############################################################################## 
- 2  # 
- 3  # diffpy.srrietveld by DANSE Diffraction group 
- 4  #                   Simon J. L. Billinge 
- 5  #                   (c) 2008 Trustees of the Columbia University 
- 6  #                   in the City of New York.  All rights reserved. 
- 7  # 
- 8  # File coded by:    Wenduo Zhou 
- 9  # 
-10  # See AUTHORS.txt for a list of people who contributed. 
-11  # See LICENSE.txt for license information. 
-12  # 
-13  ############################################################################## 
-14  """ 
-15    Utility functions for string operation 
-16  """ 
-17  __id__ = "$Id: stringutilfunction.py 2792 2009-03-02 15:56:43Z wdzhou $" 
-18   
-
        19 -def startWith(s, h): 
-
        20      """ 
-21      check with string started with a certain head  
-22   
-23      argument 
-24      - s :   string, to be checked 
-25      - h :   string, head 
-26   
-27      return  --  Boolean 
-28      """ 
-29      if not isinstance(s, str): 
-30          errmsg = "stringutilfunction.startWith(s, h):  \ 
-31              input argument Error, s is not string, but %-10s"% (type(s)) 
-32          raise NotImplementedError(errmsg) 
-33      if not isinstance(h, str): 
-34          errmsg = "stringutilfunction.startWith(s, h):  \ 
-35              input argument Error, h is not string, but %-10s"% (type(h)) 
-36          raise NotImplementedError(errmsg) 
-37   
-38      lenh = len(h) 
-39      if len(s) < lenh: 
-40          return False 
-41   
-42      for cindex in xrange(lenh): 
-43          if s[cindex] != h[cindex]: 
-44              return False 
-45   
-46      return True 
-
        47   
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        Module uisupport

        source code

        -
        -
-Supporting User Interface Applications, including
-1. Fitting
-2. I/O
-
-3. Auxiliary:
-   - convertDataFormat          convert a data file to SrRietveld compatible
-        (datafilename, engine)  according to engine
-
-   - getRefinementStrategy      generate a RefineStrategy 
-        (strategytype, strategyfname, instrumenttype, engine):
-
-   - genMeasurementXML
-Using:  Standard Infomation Dictionary as Input. 
-        The definition of the unified information dictionary will be defined in developer manual
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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        -
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        singleRaPDFFit(infodict)
        - Refining a single data set against the model for RAPDF...        		 - source code - -
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        -   - - - - - - -
        sequentialFit(myinstrument, - infodict)
        - Sequential Fitting...        		 - source code - -
        - -
        -   - - - - - - -
        independentFit(myinstrument, - infodict)
        - Fitting diffraction data with input structure model ...        		 - source code - -
        - -
        -   - - - - - - -
        genFileListFromTemplate(datafiletemplate, - directory)
        - Generate data file list from template data file and...        		 - source code - -
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        -   - - - - - - -
        genFileListFromInfoFile(infofilename, - directory)
        - Generate a list of files by information file name...        		 - source code - -
        - -
        -   - - - - - - -
        mapDataFileToStructure(structuresdict, - datafiletuplist)
        - Used in refining diffraction data in parallel -Upon input structures related to environement values and -data files related to environment values, map the structure -to data file - -Argument: -- struturesdict : dict.        		 - source code - -
        - -
        -   - - - - - - -
        convertCHIDataFileFormatGSAS(infodict)
        - Convert the chi file to diffpy.srrietveld understandable XYSigma data file...        		 - source code - -
        - -
        -   - - - - - - -
        convertCHIDataFileFormatFullProf(infodict)
        - Convert the chi file to diffpy.srrietveld understandable XYSigma data file...        		 - source code - -
        - -
        -   - - - - - - -
        genRAPDFXMLTemplate(genxmlname)
        - Generate RAPDF sequential fitting input XML...        		 - source code - -
        - -
        -   - - - - - - -
        readRAPDFXML(xmlfname)
        - Read RaPDF input XML file...        		 - source code - -
        - -
        -   - - - - - - -
        convertDataFormat(datafilename, - engine, - helpdict=None, - rootfilename=None, - newdir='')
        - Conver the input data file (single file) to SrRietveld ...        		 - source code - -
        - -
        -   - - - - - - -
        convertDataFilesFormat(engine, - inputinfodict, - helpdict, - rootfilename=None, - newdir='Converted/')
        - Convert multiple files data format to diffpy.srrietveld -standard XYSigma data file - -Argument: -- engine : int -- inputinfodict : dictionary as standard SrRietveld refine/ - seqeuntialfit inputinfodict -- helpdict : dictionary for helping information for - special case.        		 - source code - -
        - -
        -   - - - - - - -
        isOfTemplate(fname, - template)
        - Judge a file name is conformted to a given template...        		 - source code - -
        - -
        -   - - - - - - -
        getRefinementStrategy(strategytype, - strategyfname, - instrumenttype, - engine)
        - Determine the refinement strategy according to instrument type and other ...        		 - source code - -
        - -
        - - - - - - - - - - - - -
        - - - - - -
        Variables[hide private]
        -
        -   - - __id__ = '$Id: uisupport.py 2922 2009-03-20 15:46:57Z wdzhou $' -
        -   - - _MEMCHECK = True
        - Fitting Script Including I/O -
        - - - - - - -
        - - - - - -
        Function Details[hide private]
        -
        - -
        - -
        - - -
        -

        singleRaPDFFit(infodict) -

        -         		source code  -
        - - 
        -Refining a single data set against the model for RAPDF
-
-Argument:
-- infodict  :   dictionary, with tree structure
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        sequentialFit(myinstrument, - infodict) -

        -         		source code  -
        - - 
        -Sequential Fitting
-
-Arguments:
-- myinstrument  :   Instrument
-- infodict      :   dict, as standard SrRietveld inputinfodict
-
-Return              :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        independentFit(myinstrument, - infodict) -

        -         		source code  -
        - - 
        -Fitting diffraction data with input structure model 
-independently
-
-Arguments:
-- myinstrument  :   Instrument
-- infodict  : dict
-
-Return      : None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        genFileListFromTemplate(datafiletemplate, - directory) -

        -         		source code  -
        - - 
        -Generate data file list from template data file and
-interpret the file name with environment parameters
-
-Argument:
-- datafiletemplate  :   str
-- directory         :   str, directory the data file located
-
-Return  :   list, of tuple
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        genFileListFromInfoFile(infofilename, - directory) -

        -         		source code  -
        - - 
        -Generate a list of files by information file name
-with the environment parameters
-
-Argument:
-- infofilename  :   str
-- directory     :   str
-
-Return          :   list, of 2-tuple, (data file name, environment parameter value)
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        mapDataFileToStructure(structuresdict, - datafiletuplist) -

        -         		source code  -
        - - 
        -Used in refining diffraction data in parallel
-Upon input structures related to environement values and 
-data files related to environment values, map the structure
-to data file
-
-Argument:
-- struturesdict :   dict.  key = environement value.  value = Crystal Structure
-- datafiletuplelist:list.  
-
-Return          :   dict
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        convertCHIDataFileFormatGSAS(infodict) -

        -         		source code  -
        - - 
        -Convert the chi file to diffpy.srrietveld understandable XYSigma data file
-
-Argument:
-- infodict  :   dictionary
-
-Return      :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        convertCHIDataFileFormatFullProf(infodict) -

        -         		source code  -
        - - 
        -Convert the chi file to diffpy.srrietveld understandable XYSigma data file
-
-Argument:
-- infodict  :   dictionary
-
-Return      :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        genRAPDFXMLTemplate(genxmlname) -

        -         		source code  -
        - - 
        -Generate RAPDF sequential fitting input XML
-
-Argument:
-- genxmlname    :   str, XML file name
-
-Return          :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        readRAPDFXML(xmlfname) -

        -         		source code  -
        - - 
        -Read RaPDF input XML file
-
-Argument:
-- xmlfname  :   str, XML file name
-
-Return      :   dictionary, information
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        convertDataFormat(datafilename, - engine, - helpdict=None, - rootfilename=None, - newdir='') -

        -         		source code  -
        - - 
        -Conver the input data file (single file) to SrRietveld 
-acceptible data file
-
-Argument:
-- datafilename  :   str
-- engine        :   str (1: Fullprof, 2: GSAS)
-- helpfiledict  :   dictionary
-
-Return          :   dict, converted data file name
-                    key = bank ID (Constant Wavelength Instrument: bank ID = 0)
-                    value = data file name
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        convertDataFilesFormat(engine, - inputinfodict, - helpdict, - rootfilename=None, - newdir='Converted/') -

        -         		source code  -
        - - 
        -Convert multiple files data format to diffpy.srrietveld 
-standard XYSigma data file
-
-Argument:
-- engine        :   int
-- inputinfodict :   dictionary as standard SrRietveld refine/
-                    seqeuntialfit inputinfodict
-- helpdict      :   dictionary for helping information for
-                    special case. 
-                    Definition of keys refers to convertDataFormat()
-- rootfilename  :   str, root of data file name (w/o posfix)
-- newdir        :   str, new directory to write the data file
-
-Return      :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        isOfTemplate(fname, - template) -

        -         		source code  -
        - - 
        -Judge a file name is conformted to a given template
-
-Argument:
-- fname     :   str
-- template  :   str
-
-Return      :   True/False
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getRefinementStrategy(strategytype, - strategyfname, - instrumenttype, - engine) -

        -         		source code  -
        - - 
        -Determine the refinement strategy according to instrument type and other 
-information
-
-Argument:
-- instrumenttype    :   str
-
-Return              :   RefineStrategy instance
-
-
        -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.uisupport-pysrc.html b/static_root/doc/srrietveld/developers/srrietveld.uisupport-pysrc.html deleted file mode 100644 index c1b4f4d7..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.uisupport-pysrc.html +++ /dev/null @@ -1,1170 +0,0 @@ - - - - - srrietveld.uisupport - - - - - - - - - - - - - - - - - - - - - - -
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        Source Code for Module srrietveld.uisupport

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2008 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Wenduo Zhou 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14  """ 
- 15  Supporting User Interface Applications, including 
- 16  1. Fitting 
- 17  2. I/O 
- 18   
- 19  3. Auxiliary: 
- 20     - convertDataFormat          convert a data file to SrRietveld compatible 
- 21          (datafilename, engine)  according to engine 
- 22   
- 23     - getRefinementStrategy      generate a RefineStrategy  
- 24          (strategytype, strategyfname, instrumenttype, engine): 
- 25   
- 26     - genMeasurementXML 
- 27  Using:  Standard Infomation Dictionary as Input.  
- 28          The definition of the unified information dictionary will be defined in developer manual 
- 29  """ 
- 30  __id__ = "$Id: uisupport.py 2922 2009-03-20 15:46:57Z wdzhou $" 
- 31   
- 32  import diffpy.srrietveld.io            as SIO 
- 33   
- 34  _MEMCHECK = True 
- 35   
- 36  """ 
- 37  1. Fitting Script Including I/O 
- 38  """ 
-
         39 -def singleRaPDFFit(infodict): 
-
         40      """ Refining a single data set against the model for RAPDF 
- 41   
- 42      Argument: 
- 43      - infodict  :   dictionary, with tree structure 
- 44      """ 
- 45      import diffpy.srrietveld.xmlinterface as XMLInterface 
- 46      import diffpy.srrietveld.xmlgenerator  as XMLG 
- 47      import diffpy.srrietveld.refinemanager as RM 
- 48      import diffpy.srrietveld.midscript     as MS 
- 49   
- 50      instrumentxml    = infodict["CALIBRATION"]["InstrumentXML"] 
- 51      structurexml     = infodict["CALIBRATION"]["StructureXML"] 
- 52      datafilename     = infodict["CALIBRATION"]["File"] 
- 53      myrefinestrategy = infodict["CALIBRATION"]["RefineStrategy"] 
- 54      wavelength       = infodict["INSTRUMENT"]["Wavelength"] 
- 55      bkgdfilename     = infodict["CALIBRATION"]["Background"]["FileName"] 
- 56   
- 57      # 1. Generate Measturement XML file  
- 58      bgpoints = None 
- 59      instrumenttype, instrumentname = XMLInterface.getInstrumentNameType(instrumentxml) 
- 60       
- 61      xmlfname = "tempmeasure.xml" 
- 62      bgpoints = SIO.getDataFromColumnFile(bkgdfilename, 0, 1) 
- 63      xml = XMLG.RAPDFMeasurementXMLGenerator(datafilename, bgpoints) 
- 64      xml.exportXML(xmlfname) 
- 65   
- 66      # 2. Import and fix all variable 
- 67      xmlparser = XMLInterface.RietXMLParser(instrument=instrumentxml, model=structurexml, measurement=xmlfname) 
- 68      myfit = xmlparser.getFit() 
- 69   
- 70      # 2.1 Set wave-length 
- 71      if wavelength is not None: 
- 72          patterns = MS.getPatterns(myfit) 
- 73          for pat in patterns: 
- 74              pat.setValue("Lambda", wavelength) 
- 75   
- 76      # 2. Use refine manager 
- 77      myrefinemanager = RM.MultiStepRefineManager(myfit) 
- 78   
- 79      # 3. Refine! 
- 80      myrefinemanager.refine(myrefinestrategy) 
- 81   
- 82      return myrefinemanager 
-
         83   
- 84   
-
         85 -def sequentialFit(myinstrument, infodict): 
-
         86      """ Sequential Fitting 
- 87   
- 88      Arguments: 
- 89      - myinstrument  :   Instrument 
- 90      - infodict      :   dict, as standard SrRietveld inputinfodict 
- 91   
- 92      Return              :   None 
- 93      """ 
- 94      import diffpy.srrietveld.refinestrategy    as RS 
- 95      import diffpy.srrietveld.refinemanager     as RM 
- 96      import diffpy.srrietveld.xmlinterface    as XMLInterface 
- 97      import diffpy.srrietveld.sequentialrefinecontrol as SRC 
- 98      import diffpy.srrietveld.monitormem         as MM 
- 99   
-100      # 1. Set parameter right 
-101      structurexmllist = infodict["SAMPLE"]["Structure"] 
-102      mystrategy       = infodict["SAMPLE"]["RefineStrategy"] 
-103      environparname   = infodict["SAMPLE"]["EnvironmentParameterName"] 
-104      bkgdfilename     = infodict["SAMPLE"]["Background"]["FileName"] 
-105      projectfname     = infodict["SAMPLE"]["SaveName"] 
-106      datafiletuplist  = infodict["SAMPLE"]["DataFileTupleList"] 
-107   
-108      # 2. Import and fix all variable 
-109      instrumenttype = myinstrument.getType() 
-110      instrumentname = myinstrument.getName() 
-111   
-112      # 3. Structure: assuming all phases belonged to same structure, 
-113      #    even there are multiple inputs of XML file/CIF file       
-114      # FIXME - sequentialFit only supports single structure  
-115      structurexmls  = infodict["SAMPLE"]["Structure"] 
-116      mystructures   = [] 
-117      for structurexml in structurexmls: 
-118          mystructures.extend( XMLInterface.StructureXMLParser(structurexml).getStructure() ) 
-119   
-120      # 3.1 Background 
-121      # FIXME - Should be unified with srrietveld-refine.py 
-122      # FIXME - Only one background file.  Remember in GEM, multiple banks 
-123      #         uses different background files as input 
-124      if bkgdfilename is not None: 
-125          bgpoints = SIO.getDataFromColumnFile(bkgdfilename, 0, 1) 
-126      else: 
-127          bgpoints = [] 
-128      bkgdtype = myinstrument.getBackgroundType() 
-129      bkgdinfodict   = {} 
-130      if bkgdtype == "Interpolation": 
-131          bkgdinfodict["Type"]     = bkgdtype 
-132          bkgdinfodict["Format"]   = "Selected" 
-133          bkgdinfodict["Selected"] = bgpoints 
-134   
-135      # 3.2 Excluded region 
-136      if infodict["SAMPLE"]["ExcludedRegionFile"] is not None: 
-137          exrefilename = infodict["SAMPLE"]["ExcludedRegionFile"] 
-138          excludedregionsdict =  XMLInterface.importExcludedRegionFile(exrefilename) 
-139      else: 
-140          excludedregionsdict = None 
-141      # END-IF-ELSE 
-142   
-143      # 4. Use refine manager, bank to refine (optional) refine strategy, refine direction 
-144      #    start value, data set number  
-145      seqrefctrl = SRC.SeqRefineController(myinstrument, datafiletuplist,  
-146              environparname, mystructures) 
-147      # banks to refine 
-148      seqrefctrl.setBankToRefine( infodict["SAMPLE"]["RefineBank"] ) 
-149      # excluded region 
-150      if excludedregionsdict is not None: 
-151          for bankid in infodict["SAMPLE"]["RefineBank"]: 
-152              if excludedregionsdict.has_key(bankid): 
-153                  seqrefctrl.setExcludedRegion(bankid, excludedregionsdict[bankid]) 
-154      # refine strategy 
-155      seqrefctrl.setRefineStrategy(mystrategy) 
-156      # refine direction 
-157      if infodict["SAMPLE"]["RefineDirection"].lower() == "up": 
-158          direction = 1 
-159      elif infodict["SAMPLE"]["RefineDirection"].lower() == "down": 
-160          direction = -1 
-161      else: 
-162          errmsg = "Direction %-10s Unacceptible"% (direction) 
-163          raise AttributeError(errmsg) 
-164      # END-IF 
-165      # background 
-166      seqrefctrl.setBackground(backgroundpoints = bgpoints) 
-167      # refinement setup 
-168      startvalue    = infodict["SAMPLE"]["StartValue"] 
-169      datasetnumber = infodict["SAMPLE"]["DataSetNumber"] 
-170      seqrefctrl.setRefineControl(direction, startvalue, datasetnumber) 
-171   
-172      # 5. Clean memory 
-173      myinstrument    = None 
-174      mystructures[:] = [] 
-175      xmlparser       = None     
-176   
-177      if _MEMCHECK is True: 
-178          MM.garbageCheck(True) 
-179      else: 
-180          MM.garbageCheck(False) 
-181   
-182      # 6. refine! 
-183      seqrefctrl.refine() 
-184   
-185      # 7. save! 
-186      seqrefctrl.save(projectfname) 
-187   
-188      # 8. Clean memory and Memory check 
-189      seqrefctrl      = None 
-190      if _MEMCHECK is True: 
-191          MM.garbageCheck(True) 
-192      else: 
-193          MM.garbageCheck(False) 
-194   
-195      return  
-
        196   
-197   
-
        198 -def independentFit(myinstrument, infodict): 
-
        199      """ Fitting diffraction data with input structure model  
-200      independently 
-201   
-202      Arguments: 
-203      - myinstrument  :   Instrument 
-204      - infodict  : dict 
-205   
-206      Return      : None 
-207      """ 
-208      import diffpy.srrietveld.refinestrategy    as RS 
-209      import diffpy.srrietveld.refinemanager     as RM 
-210      import diffpy.srrietveld.xmlinterface    as XMLInterface 
-211      import diffpy.srrietveld.parallelrefinecontrol as PRC 
-212      import diffpy.srrietveld.monitormem         as MM 
-213      import diffpy.srrietveld.utilsequentialrefine as SU 
-214   
-215      # 1. Set parameter right 
-216      mystrategy       = RS.CloseRietveldRefineStrategy() 
-217      instrumentxml    = infodict["SAMPLE"]["InstrumentXML"] 
-218      environparname   = infodict["SAMPLE"]["EnvironmentParameterName"] 
-219      bkgdfilename     = infodict["SAMPLE"]["Background"]["FileName"] 
-220      projectfname     = infodict["SAMPLE"]["SaveName"] 
-221      datafiletuplist  = infodict["SAMPLE"]["DataFileTupleList"] 
-222   
-223      # 2. Import and fix all variable 
-224      instrumenttype = myinstrument.getType() 
-225      instrumentname = myinstrument.getName() 
-226   
-227      # 3. Background 
-228      bgpoints = SIO.getDataFromColumnFile(bkgdfilename, 0, 1) 
-229      bkgdtype = myinstrument.getBackgroundType() 
-230      if bkgdtype == "Interpolation": 
-231          bkgdinfodict   = {} 
-232          bkgdinfodict["Type"]     = bkgdtype 
-233          bkgdinfodict["Format"]   = "Selected" 
-234          bkgdinfodict["Selected"] = bgpoints 
-235      # LOOP-OVER 
-236   
-237      # 4. Generate structure-datanumber list  
-238      structuresdict = SU.parseStructureSeqXML(infodict["SAMPLE"]["XMlInputFileName"]) 
-239      datafilestructuredict = mapDataFileToStructure(structuresdict, datafiletuplist) 
-240   
-241      # 5. Set up parallel refinement controller 
-242      indrefctrl = PRC.ParallelRefinementControl(myinstrument, datafilestructuredict, 
-243              environparname, bkgdinfodict) 
-244   
-245      indrefctrl.setRefineStrategy(mystrategy) 
-246   
-247      # 5. refine! 
-248      indrefctrl.refine() 
-249   
-250      # 6. save! 
-251      indrefctrl.save(projectfname) 
-252   
-253      return  
-
        254   
-255   
-
        256 -def genFileListFromTemplate(datafiletemplate, directory): 
-
        257      """ Generate data file list from template data file and 
-258      interpret the file name with environment parameters 
-259   
-260      Argument: 
-261      - datafiletemplate  :   str 
-262      - directory         :   str, directory the data file located 
-263   
-264      Return  :   list, of tuple 
-265      """ 
-266      # 1. Get list of ALL file names 
-267      filenameslist = SIO.listFileNamesInDirectory(directory) 
-268       
-269      # 2. Get the names of the file to process 
-270      terms = datafiletemplate.strip().split("*") 
-271      prefix = terms[0].lower() 
-272      posfix = terms[1].lower() 
-273       
-274      datafiletuplist = [] 
-275      for fname in filenameslist: 
-276          lfname = fname.lower() 
-277          if lfname.count(prefix) >= 1 and lfname.count(posfix) == 1 and lfname.split(posfix)[-1] == "": 
-278              # 2.1 generate file name 
-279              datafname = directory+fname 
-280              # 2.2 generate the parameter 
-281              parstr = lfname.split(prefix)[1].split(posfix)[0] 
-282              parval = float(parstr) 
-283              datafiletuplist.append( (datafname, parval) ) 
-284      # LOOP-OVER: for fname in filenameslist 
-285   
-286      for fname, parval in datafiletuplist: 
-287          print "%-10s   %-20s"% (fname, parval) 
-288      raise NotImplementedError("Debug Stop") 
-289       
-290      return datafiletuplist 
-
        291   
-292   
-
        293 -def genFileListFromInfoFile(infofilename, directory): 
-
        294      """ Generate a list of files by information file name 
-295      with the environment parameters 
-296   
-297      Argument: 
-298      - infofilename  :   str 
-299      - directory     :   str 
-300   
-301      Return          :   list, of 2-tuple, (data file name, environment parameter value) 
-302      """ 
-303      # 1. Parse file 
-304      ifile  = open(infofilename, "r") 
-305      rlines = ifile.readlines() 
-306      ifile.close() 
-307   
-308      # 2. Parse each line to get result 
-309      if directory != "" and directory[-1] != "/": 
-310          directory = directory + "/" 
-311      filetuplelist = []  
-312      for rline in rlines: 
-313          cline = rline.strip() 
-314          if cline != "": 
-315              try: 
-316                  terms = cline.split() 
-317                  filename = terms[0] 
-318                  parval   = float(terms[1]) 
-319                  if filename.count(directory) == 0: 
-320                      filename = directory+filename 
-321                  filetuplelist.append( (filename, parval) ) 
-322              except IndexError, err: 
-323                  pass 
-324              except ValueError, err: 
-325                  errmsg = "File Name %-20s Of Value %-20s Is Not Recognized!"% (terms[0], terms[1]) 
-326          # END-IF 
-327      # LOOP-OVER 
-328   
-329      return filetuplelist 
-
        330   
-331   
-
        332 -def mapDataFileToStructure(structuresdict, datafiletuplist): 
-
        333      """ Used in refining diffraction data in parallel 
-334      Upon input structures related to environement values and  
-335      data files related to environment values, map the structure 
-336      to data file 
-337   
-338      Argument: 
-339      - struturesdict :   dict.  key = environement value.  value = Crystal Structure 
-340      - datafiletuplelist:list.   
-341   
-342      Return          :   dict 
-343      """ 
-344      # FIXME - Do not handle the case that several data files related to same environement value 
-345       
-346      import diffpy.srrietveld.auxiliary as AXL 
-347   
-348      # 1. Init and prepare 
-349      datafilestructuredict = {} 
-350   
-351      datafiledict = {} 
-352      for tup in datafiletuplist: 
-353          filename = tup[0] 
-354          envvalue = tup[1] 
-355          datafiledict[envvalue] = filename 
-356   
-357      # 2. Find datafile with file 
-358      envvaluestructurelist = sorted( structuresdict.keys() ) 
-359      envvaluedatafilelist = sorted( datafiledict.keys() ) 
-360      for envvalue in sorted( envvaluestructurelist ): 
-361          mapindex = AXL.getValueIndex(envvaluedatafilelist, envvalue) 
-362          mapvalue = envvaluedatafilelist[mapindex] 
-363          filename = datafiledict[mapvalue] 
-364          structure = structuresdict[envvalue] 
-365          datafilestructuredict[filename] = (structure, mapvalue) 
-366      # LOOP-OVER 
-367       
-368      return datafilestructuredict 
-
        369   
-370   
-
        371 -def convertCHIDataFileFormatGSAS(infodict): 
-
        372      """ Convert the chi file to diffpy.srrietveld understandable XYSigma data file 
-373   
-374      Argument: 
-375      - infodict  :   dictionary 
-376   
-377      Return      :   None 
-378      """ 
-379      import diffpy.srrietveld.io                as SIO 
-380      import diffpy.srrietveld.datafileparser    as SPR 
-381      import os 
-382      # FIXME - Replaced by convertDataFiles().  Should be removed soon. 
-383      errmsg = "Replaced by convertDataFiles()" 
-384      raise NotImplementedError, errmsg 
-385   
-386      cat = "SAMPLE" 
-387   
-388      # 1. Retrieve information 
-389      chidir            = infodict[cat]["Directory"] 
-390      chifileslist      = SIO.listFileNamesInDirectory(chidir) 
-391      datafiletuplelist = infodict[cat]["DataFileTupleList"] 
-392      directory         = infodict[cat]["Directory"] 
-393      if directory != "" and directory[-1] != "/": 
-394          directory += "/" 
-395   
-396      # 2. Make new directory 
-397      newdir = "Converted/" 
-398      direxist = False 
-399      try: 
-400          os.mkdir(newdir) 
-401      except OSError, err:  
-402          errmsg = str(err) 
-403          if errmsg.count("File exists") == 1: 
-404              direxist = True 
-405          else: 
-406              selfmsg = "Cannot Make Directory %-20s.  Directory %-20 Is Not Previously Made"% \ 
-407                  (newdir, newdir) 
-408              raise FitConfigurationError(selfmsg) 
-409          # END-IF-ELSE 
-410      # END-TRY-EXCEPT 
-411   
-412   
-413      # 3. Convert file and make new list 
-414      convtuplelist = [] 
-415      for completefname,  parval in datafiletuplelist: 
-416          # (1) Parse old name and generate new name 
-417          if directory != "": 
-418              fname   = completefname.split(directory)[1] 
-419   
-420          newdatname = fname.lower().split(".")[0]+".dat" 
-421          newgsaname = fname.lower().split(".")[0]+".gsa" 
-422          newdatfullname  = newdir+newdatname 
-423          newgsafullname  = newdir+newgsaname 
-424   
-425          # (2) Convert 
-426          SPR.convertChiToXYSigma(completefname, newdatfullname) 
-427          SPR.convertChiToGSAS(completefname, newgsafullname) 
-428          convtuplelist.append( (newgsafullname, parval) )  
-429   
-430      # 4. Setup 
-431      infodict[cat]["Directory"] = newdir 
-432      infodict[cat]["DataFileTupleList"] = convtuplelist 
-433   
-434      return 
-
        435           
-436   
-
        438      """ Convert the chi file to diffpy.srrietveld understandable XYSigma data file 
-439   
-440      Argument: 
-441      - infodict  :   dictionary 
-442   
-443      Return      :   None 
-444      """ 
-445      # FIXME - Replaced by convertDataFiles().  Should be removed soon. 
-446      errmsg = "Replaced by convertDataFiles()" 
-447      raise NotImplementedError, errmsg 
-448      import diffpy.srrietveld.io                as SIO 
-449      import diffpy.srrietveld.datafileparser    as SPR 
-450      import os 
-451   
-452      raise NotImplementedError("Should be re-organized") 
-453   
-454      cat = "SAMPLE" 
-455   
-456      # 1. Retrieve information 
-457      chidir            = infodict[cat]["Directory"] 
-458      datafiletuplelist = infodict[cat]["DataFileTupleList"] 
-459      directory         = infodict[cat]["Directory"] 
-460      if directory != "" and directory[-1] != "/": 
-461          directory += "/" 
-462   
-463      # 2. Make new directory 
-464      newdir   = "Converted/" 
-465      direxist = False 
-466      try: 
-467          os.mkdir(newdir) 
-468      except OSError, err:  
-469          errmsg = str(err) 
-470          if errmsg.count("File exists") == 1: 
-471              direxist = True 
-472          else: 
-473              selfmsg = "Cannot Make Directory %-20s.  Directory %-20 Is Not Previously Made"% \ 
-474                  (newdir, newdir) 
-475              raise FitConfigurationError(selfmsg) 
-476          # END-IF-ELSE 
-477      # END-TRY-EXCEPT 
-478   
-479      # 3. Convert file and make new list 
-480      convtuplelist = [] 
-481      for completefname,  parval in datafiletuplelist: 
-482          # (1) Parse old name and generate new name 
-483          if directory != "": 
-484              fname   = completefname.split(directory)[1] 
-485          newname = fname.lower().split(".")[0]+".dat" 
-486          newfullname  = newdir+newname 
-487   
-488          # (2) Convert if file does not exist 
-489          if direxist is False: 
-490              fileExist = False 
-491          else: 
-492              if os.path.isfile(newfullname) is True: 
-493                  fileExist = True 
-494              else:    
-495                  fileExist = False 
-496          # END-IF-ELSE 
-497   
-498          if fileExist is False: 
-499              SPR.convertChiToXYSigma(completefname, newfullname) 
-500   
-501          convtuplelist.append( (newfullname, parval) )  
-502      # END-IF 
-503   
-504      # 4. Setup 
-505      infodict[cat]["Directory"] = newdir 
-506      infodict[cat]["DataFileTupleList"] = convtuplelist 
-507   
-508      return 
-
        509   
-510   
-
        511 -def isOfTemplate(fname, template): 
-
        512      """ Judge a file name is conformted to a given template 
-513   
-514      Argument: 
-515      - fname     :   str 
-516      - template  :   str 
-517   
-518      Return      :   True/False 
-519      """ 
-520      parts  = template.split('*') 
-521      oftemp = True 
-522      for p in parts: 
-523          if p != "": 
-524              if fname.count(p) == 0: 
-525                  oftemp = False 
-526                  break 
-527       
-528      return oftemp 
-
        529   
-530   
-531  """ 
-532  I/O: RAPDF 
-533  """ 
-
        534 -def genRAPDFXMLTemplate(genxmlname): 
-
        535      """ Generate RAPDF sequential fitting input XML 
-536   
-537      Argument: 
-538      - genxmlname    :   str, XML file name 
-539   
-540      Return          :   None 
-541      """ 
-542      import xml.dom.minidom 
-543   
-544      rootxml  = xml.dom.minidom.Document() 
-545      rootnode = rootxml.createElement("RAPDF-REFINE-INPUT") 
-546      rootxml.appendChild(rootnode) 
-547   
-548      # 1. Instrument 
-549      instrumentnode = rootxml.createElement("RAPDF") 
-550      rootnode.appendChild(instrumentnode) 
-551   
-552      instrumentnode.setAttribute("Wave-Length", "?") 
-553   
-554      # 2. Calibration 
-555      calnode = rootxml.createElement("CALIBRATION") 
-556      rootnode.appendChild(calnode) 
-557   
-558      calnode.setAttribute("Standard", "Si, Ni, ...") 
-559      calnode.setAttribute("FileName", "?") 
-560   
-561      exregionnode = rootxml.createElement("EXCLUDEDREGION") 
-562      calnode.appendChild(exregionnode) 
-563      exregionnode.setAttribute("Type", "Add/Replace") 
-564   
-565      singleregionnode = rootxml.createElement("REGION") 
-566      exregionnode.appendChild(singleregionnode) 
-567      singleregionnode.setAttribute("Begin", "?") 
-568      singleregionnode.setAttribute("End", "?") 
-569   
-570      # 3. Sample 
-571      samplenode = rootxml.createElement("SAMPLE") 
-572      rootnode.appendChild(samplenode) 
-573   
-574      samplenode.setAttribute("Directory", "?") 
-575      samplenode.setAttribute("Template", "?") 
-576      samplenode.setAttribute("SaveAs", "?") 
-577      samplenode.setAttribute("EnvironmentParameter", "") 
-578      samplenode.setAttribute("Refine-Direction", "low-to-high/high-to-low") 
-579   
-580      structnode = rootxml.createElement("STRUCTURE") 
-581      samplenode.appendChild(structnode) 
-582       
-583      structnode.setAttribute("FileName", "?") 
-584   
-585      exregionnode = rootxml.createElement("EXCLUDEDREGION") 
-586      samplenode.appendChild(exregionnode) 
-587      exregionnode.setAttribute("Type", "Add/Replace") 
-588   
-589      singleregionnode = rootxml.createElement("REGION") 
-590      exregionnode.appendChild(singleregionnode) 
-591      singleregionnode.setAttribute("Begin", "?") 
-592      singleregionnode.setAttribute("End", "?") 
-593   
-594      s = rootxml.toprettyxml(indent="    ") 
-595      ofile = open(genxmlname, "w") 
-596      ofile.write(s) 
-597      ofile.close() 
-
        598   
-599   
-
        600 -def readRAPDFXML(xmlfname): 
-
        601      """ Read RaPDF input XML file 
-602   
-603      Argument: 
-604      - xmlfname  :   str, XML file name 
-605   
-606      Return      :   dictionary, information 
-607      """ 
-608      def getChildNodes(xmlnode, childnodenameslist): 
-609          """ 
-610          Get child nodes' local names 
-611   
-612          Argument: 
-613          - xmlnode   :   XML node 
-614          - childnodenameslist:   list of str 
-615   
-616          Return      :   list of XML nodes 
-617          """ 
-618          # 1. Init 
-619          numnodes  = len(childnodenameslist) 
-620          nodeslist = [] 
-621   
-622          for i in xrange(numnodes): 
-623              nodeslist.append(None) 
-624   
-625          # 2. Search 
-626          for childnode in xmlnode.childNodes: 
-627              for i in xrange(numnodes): 
-628                  if childnode.localName == childnodenameslist[i]: 
-629                      nodeslist[i] = childnode 
-630                      break 
-631   
-632          # 3. Return 
-633          return nodeslist 
-
        634   
-635   
-636      def getFloat(xmlnode, attribname): 
-637          """ Get a float number 
-638   
-639          Argument: 
-640          - xmlnode   :   XML node 
-641          - attribname:   str 
-642   
-643          Return      :   float/None 
-644          """ 
-645          valstr = xmlnode.getAttribute(attribname) 
-646          try: 
-647              val = float(valstr) 
-648          except ValueError, err: 
-649              val = None 
-650          return val 
-651   
-652   
-653      def getString(xmlnode, attribname): 
-654          """ get a string 
-655   
-656          Argument: 
-657          - xmlnode   :   XML node 
-658          - attribname:   str 
-659   
-660          Return      :   float/None 
-661          """ 
-662          valstr = xmlnode.getAttribute(attribname) 
-663          try: 
-664              val = str(valstr) 
-665          except ValueError, err: 
-666              val = None 
-667          return val 
-668   
-669   
-670      def getExcludedRegions(exclregionnode): 
-671          """ Get the excluded region from an Excluded-Region node 
-672   
-673          Argument: 
-674          - exclregionnode    :   XML node 
-675   
-676          Return              :   2-tuple,  
-677                                  - str, type of excluded region, add or replace 
-678                                  - list of 2-tuple 
-679          """ 
-680          excludedregionlist = [] 
-681          for childnode in exclregionnode.childNodes: 
-682              if childnode.localName == "REGION": 
-683                  begin = getFloat(childnode, "Begin") 
-684                  end   = getFloat(childnode, "End") 
-685                  if begin is not None and end is not None: 
-686                      excludedregionlist.append( (begin, end) ) 
-687   
-688          type = getString(exclregionnode, "Type") 
-689          numadd = type.count("Add") 
-690          numrep = type.count("Replace") 
-691          if numadd+numrep == 2 or numadd+numrep == 0: 
-692              type = "Add" 
-693          elif numadd == 1: 
-694              type == "Replace" 
-695          else: 
-696              pass 
-697   
-698          return ( (type, excludedregionlist) ) 
-699   
-700   
-701      import diffpy.srrietveld.xmlinterface as XMLI 
-702   
-703      infodict = {} 
-704   
-705      # 1. import XML 
-706      try: 
-707          rootxml = XMLI.importXML(xmlfname) 
-708      except Exception, err: 
-709          errmsg = "Input XML File Error\n" 
-710          print str(err) 
-711          raise FitConfigurationError(errmsg + str(err)) 
-712   
-713      # 2. locate root node     
-714      rootnode = getChildNodes(rootxml, ["RAPDF-REFINE-INPUT"])[0] 
-715   
-716      # 3. parse 
-717      calibrnode, samplenode, instrunode = getChildNodes(rootnode, ["CALIBRATION", "SAMPLE", "RAPDF"]) 
-718     
-719      # 3.1 RAPDF node 
-720      infodict["INSTRUMENT"] = {} 
-721      infodict["INSTRUMENT"]["Wavelength"] = getFloat(instrunode, "Wave-Length") 
-722   
-723      # 3.2 Calibration node 
-724      infodict["CALIBRATION"] = {} 
-725      infodict["CALIBRATION"]["Type"] = getString(calibrnode, "Standard") 
-726      infodict["CALIBRATION"]["File"] = getString(calibrnode, "FileName") 
-727   
-728      exclregionnode, backgroundnode = getChildNodes(calibrnode, ["EXCLUDEDREGION", "BACKGROUND"]) 
-729      infodict["CALIBRATION"]["ExcludedRegion"] = getExcludedRegions(exclregionnode) 
-730   
-731      infodict["CALIBRATION"]["Background"]     = {} 
-732      infodict["CALIBRATION"]["Background"]["FileName"] = getString(backgroundnode, "File") 
-733   
-734      # 3.3 Sample node 
-735      infodict["SAMPLE"] = {} 
-736      infodict["SAMPLE"]["Directory"] = getString(samplenode, "Directory") 
-737      infodict["SAMPLE"]["Direction"] = getString(samplenode, "Refine-Direction") 
-738      infodict["SAMPLE"]["Template"]  = getString(samplenode, "Template") 
-739      infodict["SAMPLE"]["SaveName"]  = getString(samplenode, "SaveAs") 
-740      infodict["SAMPLE"]["EnvironmentParameterName"] = getString(samplenode, "EnvironmentParameter") 
-741   
-742      exclregionnode, structurenode, backgroundnode = getChildNodes(samplenode, ["EXCLUDEDREGION", "STRUCTURE", "BACKGROUND"]) 
-743   
-744      infodict["SAMPLE"]["ExcludedRegion"] = getExcludedRegions(exclregionnode) 
-745   
-746      infodict["SAMPLE"]["Structure"] = {} 
-747      infodict["SAMPLE"]["Structure"]["FileName"] = getString(structurenode, "FileName") 
-748   
-749      infodict["SAMPLE"]["Background"]     = {} 
-750      infodict["SAMPLE"]["Background"]["FileName"] = getString(backgroundnode, "File") 
-751   
-752      # 3.4 Default setup 
-753      if infodict["SAMPLE"]["SaveName"] is None or infodict["SAMPLE"]["SaveName"] == "": 
-754          infodict["SAMPLE"]["SaveName"] = "default.proj" 
-755   
-756      return infodict 
-757   
-758   
-759  # 3.  Auxiliaries 
-
        760 -def convertDataFormat(datafilename, engine, helpdict = None,  
-761          rootfilename = None, newdir = ""): 
-
        762      """ Conver the input data file (single file) to SrRietveld  
-763      acceptible data file 
-764   
-765      Argument: 
-766      - datafilename  :   str 
-767      - engine        :   str (1: Fullprof, 2: GSAS) 
-768      - helpfiledict  :   dictionary 
-769   
-770      Return          :   dict, converted data file name 
-771                          key = bank ID (Constant Wavelength Instrument: bank ID = 0) 
-772                          value = data file name 
-773      """ 
-774      import diffpy.srrietveld.datafileconverter as SDV 
-775   
-776      # 1. determine data  
-777      dataformat = SDV.dataFileFormat(datafilename) 
-778   
-779      # 2. convert if necessary 
-780      if engine == 1: 
-781          if dataformat == "DAT": 
-782              datafilenamedict = {0: datafilename} 
-783   
-784          elif dataformat == "CHI": 
-785              datafilename = SDV.convertChiToXYSigma(datafilename, filenameroot = rootfilename,  
-786                      newdir = newdir) 
-787              datafilenamedict = {0: datafilename} 
-788   
-789          elif dataformat == "GSA": 
-790              import diffpy.srrietveld.dataprocessnpdf as DN 
-791   
-792              npdfdata = DN.NPDFData(datafilename, helpdict["iparmfile"]) 
-793              datafilenamedict = {} 
-794              if rootfilename is None: 
-795                  rootfilename = datafilename.split(".")[0] 
-796                  newdir = "" 
-797   
-798              for bankid in helpdict["bankidlist"]: 
-799                  dfname = npdfdata.exportFullprof(bankid, rootfilename, newdir) 
-800                  datafilenamedict[bankid] = dfname 
-801              # LOOP-OVER 
-802           
-803          else: 
-804              errmsg = "Data format %-10s is not supported by engine Fullprof" % (dataformat) 
-805              raise NotImplementedError, errmsg 
-806          # END-IF 
-807              
-808      elif engine == 2: 
-809          if dataformat == "DAT": 
-810              chifilename = SDV.convertXYSigmaToChi(datafilename, filenameroot = rootfilename,  
-811                      newdir = newdir) 
-812              newname = SDV.convertChiToGSAS(chifilename) 
-813              datafilename = newname 
-814              datafilenamedict = {0: datafielname} 
-815   
-816          elif dataformat == "CHI": 
-817              XYSigmafile = datafilename.split(".")[0]+".dat" 
-818              SDV.convertChiToXYSigma(datafilename) 
-819              datafilename = SDV.convertChiToGSAS(datafilename, filenameroot = rootfilename,  
-820                      newdir = newdir) 
-821              datafilenamedict = {0: datafielname} 
-822   
-823          else: 
-824              errmsg = "Data format %-10s is not supported by engine GSAS" % (dataformat) 
-825              raise NotImplementedError, errmsg 
-826          # END-IF 
-827   
-828      else: 
-829          errmsg = "Engine Type %-5s Is Not Supported" % (engine) 
-830          raise NotImplementedError, errmsg 
-831   
-832      # END-IF-ELSE    
-833   
-834      return datafilenamedict 
-
        835   
-836   
-
        837 -def convertDataFilesFormat(engine, inputinfodict, helpdict,  
-838          rootfilename = None, newdir = "Converted/"): 
-
        839      """ Convert multiple files data format to diffpy.srrietveld  
-840      standard XYSigma data file 
-841   
-842      Argument: 
-843      - engine        :   int 
-844      - inputinfodict :   dictionary as standard SrRietveld refine/ 
-845                          seqeuntialfit inputinfodict 
-846      - helpdict      :   dictionary for helping information for 
-847                          special case.  
-848                          Definition of keys refers to convertDataFormat() 
-849      - rootfilename  :   str, root of data file name (w/o posfix) 
-850      - newdir        :   str, new directory to write the data file 
-851   
-852      Return      :   None 
-853      """ 
-854      import diffpy.srrietveld.io                as SIO 
-855      import diffpy.srrietveld.datafileconverter as SPV 
-856      import os 
-857   
-858      # 1. Retrieve information 
-859      cat = "SAMPLE" 
-860      chidir            = inputinfodict[cat]["Directory"] 
-861      datafiletuplelist = inputinfodict[cat]["DataFileTupleList"] 
-862      directory         = inputinfodict[cat]["Directory"] 
-863      if directory != "" and directory[-1] != "/": 
-864          directory += "/" 
-865   
-866      # 2. Make new directory 
-867      direxist = False 
-868      try: 
-869          os.mkdir(newdir) 
-870      except OSError, err:  
-871          errmsg = str(err) 
-872          if errmsg.count("File exists") == 1: 
-873              direxist = True 
-874          else: 
-875              selfmsg = "Cannot Make Directory %-20s.  Directory %-20 Is Not "% \ 
-876                  (newdir, newdir) + "Previously Made" 
-877              raise FitConfigurationError, selfmsg 
-878          # END-IF-ELSE 
-879      # END-TRY-EXCEPT 
-880   
-881      # 3. Convert file and make new list 
-882      convtuplelist = [] 
-883      for completefname,  parval in datafiletuplelist: 
-884          # 3.1. convert file because file name does not exist 
-885          if directory != "": 
-886              fname   = completefname.split(directory)[1] 
-887          rootfilename = fname.lower().split(".")[0] 
-888          newfilename = convertDataFormat(completefname, engine, helpdict, 
-889                  rootfilename = rootfilename, newdir = newdir) 
-890          # END-IF 
-891          
-892          # 3.2 edit  converted file name, parameter value tuple list 
-893          convtuplelist.append( (newfilename, parval) )  
-894      # LOOP-OVER 
-895   
-896      # 4. Setup 
-897      inputinfodict[cat]["Directory"] = newdir 
-898      inputinfodict[cat]["DataFileTupleList"] = convtuplelist 
-899   
-900      return 
-
        901   
-902   
-
        903 -def isOfTemplate(fname, template): 
-
        904      """ Judge a file name is conformted to a given template 
-905   
-906      Argument: 
-907      - fname     :   str 
-908      - template  :   str 
-909   
-910      Return      :   True/False 
-911      """ 
-912      parts  = template.split('*') 
-913      oftemp = True 
-914      for p in parts: 
-915          if p != "": 
-916              if fname.count(p) == 0: 
-917                  oftemp = False 
-918                  break 
-919       
-920      return oftemp 
-
        921   
-922   
-
        923 -def getRefinementStrategy(strategytype, strategyfname, instrumenttype, engine): 
-
        924      """ Determine the refinement strategy according to instrument type and other  
-925      information 
-926   
-927      Argument: 
-928      - instrumenttype    :   str 
-929   
-930      Return              :   RefineStrategy instance 
-931      """ 
-932      import diffpy.srrietveld.refinestrategy    as RS 
-933      import diffpy.srrietveld.xmlinterface as XMLInterface 
-934   
-935      if strategyfname is not None: 
-936          # using user defined refine strategy 
-937          rsparser = XMLInterface.RefineStrategyXMLParser(strategyfname) 
-938          rsdict   = rsparser.exportStdDictionary() 
-939          mystrategy = RS.UserDefinedRefineStrategy(rsdict) 
-940   
-941      elif strategytype is not None: 
-942          # generating refinement strategy according to type 
-943          if strategytype.lower() == "calibrated": 
-944              if instrumenttype.lower() in ["xray", "neutroncw"]: 
-945                  if engine == 1:  
-946                      mystrategy = RS.CalibratedXrayFullProfRefineStrategy() 
-947                  elif engine == 2: 
-948                      mystrategy = RS.CalibratedXrayGSASRefineStrategy() 
-949                  else: 
-950                      mystrategy = RS.CalibratedXrayRietveldRefineStrategy() 
-951              elif instrumenttype.lower() == "tof": 
-952                  if engine == 1: 
-953                      mystrategy = RS.CalibratedTOFRietveldRefineStrategy() 
-954                  elif engine == 2: 
-955                      mystrategy = RS.CalibratedTOFRietveldRefineStrategy() 
-956                  else: 
-957                      mystrategy = RS.CalibratedTOFRietveldRefineStrategy() 
-958              else: 
-959                  raise NotImplementedError("Unknown calibrated type for instrument %-10s"% (instrumenttype)) 
-960              # END-IF  
-961          elif strategytype.lower() == "calibration": 
-962              if instrumenttype.lower() in ["xray", "neutroncw"]: 
-963                  if engine == 1:  
-964                      mystrategy = RS.CalibrationXrayFullProfRefineStrategy() 
-965                  elif engine == 2: 
-966                      mystrategy = RS.CalibrationXrayGSASRefineStrategy() 
-967                  else: 
-968                      mystrategy = RS.CalibrationXrayRietveldRefineStrategy() 
-969              elif instrumenttype.lower() == "tof": 
-970                  if engine == 1: 
-971                      mystrategy = RS.CalibrationTOFFullProfRefineStrategy() 
-972                  elif engine == 2: 
-973                      mystrategy = RS.CalibrationTOFGSASRefineStrategy() 
-974                  else: 
-975                      mystrategy = RS.CalibrationTOFRietveldRefineStrategy() 
-976              else: 
-977                  raise NotImplementedError("Unknown calibration type for instrument %-10s"% (instrumenttype)) 
-978              # END-IF  
-979          # END-IF  
-980      else: 
-981          # using default refine strategy 
-982          errmsg = "Default is not set up" 
-983          raise NotImplementedError, errmsg 
-984   
-985      # END-IF 
-986   
-987      return mystrategy 
-
        988   
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        Module utilbackground

        source code

        -

        Containing the methods designed to deal with background

        - Level 1 BackgroundProcess | |- Level 2 - XrayBackgroundProcess

        - - - - - - - - - - - - - -
        - - - - - -
        Classes[hide private]
        -
        -   - - BackgroundProcess
        - Class to process background information -
        -   - - XrayBackgroundProcess
        - Class to process background for Xray -
        - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Functions[hide private]
        -
        -   - - - - - - -
        genBackground(backgrounds, - xs, - ys)
        - Generate backgrounds according to a background list in same unit...        		 - source code - -
        - -
        -   - - - - - - -
        convertQbackground(qbackgrounds, - wavelength)
        - Convert background points in Q to 2-theta...        		 - source code - -
        - -
        -   - - - - - - -
        genStandardBackground(standardname, - wavelength, - xs, - ys)
        - Generate standard's background...        		 - source code - -
        - -
        -   - - - - - - -
        replaceInterpolatedBackground(myfit)
        - Generate an interpolated background for all the Constant-Wavelength pattern ...        		 - source code - -
        - -
        - - - - - - - - - -
        - - - - - -
        Variables[hide private]
        -
        -   - - __id__ = '$Id: utilbackground.py 2922 2009-03-20 15:46:57Z wdz... -
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        - - - - - -
        Function Details[hide private]
        -
        - -
        - -
        - - -
        -

        genBackground(backgrounds, - xs, - ys) -

        -         		source code  -
        - - 
        -
-Generate backgrounds according to a background list in same unit
-
-Argument:
-- backgrounds   :   list, of float
-- xs            :   list, of float
-- ys            :   list, of float
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        convertQbackground(qbackgrounds, - wavelength) -

        -         		source code  -
        - - 
        -
-Convert background points in Q to 2-theta
-
-Argument:
-- qbackgrounds  :   list, of float
-- wavelength    :   float
-
-Return          :   list, of float
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        genStandardBackground(standardname, - wavelength, - xs, - ys) -

        -         		source code  -
        - - 
        -
-Generate standard's background
-
-Argument:
-- standardname  :   str, 
-- wavelength    :   float,
-
-Return          :   list of background points (tuple)
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        replaceInterpolatedBackground(myfit) -

        -         		source code  -
        - - 
        -
-Generate an interpolated background for all the Constant-Wavelength pattern 
-in an Fit instance
-
-Restriction:  TOF data won't be replaced at all!
-
-Arguments:
-- myfit :   diffpy.rietveldapi.Fit instance
-
-Return  :   None
-
-
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        Source Code for Module srrietveld.utilbackground

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2008 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Wenduo Zhou 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14  """ 
- 15    Containing the methods designed to deal with background 
- 16   
- 17    Level 1       BackgroundProcess 
- 18    | 
- 19    |- Level 2    XrayBackgroundProcess 
- 20  """ 
- 21  __id__ = "$Id: utilbackground.py 2922 2009-03-20 15:46:57Z wdzhou $" 
- 22   
- 23  import diffpy.srrietveld 
- 24   
-
         25 -class BackgroundProcess: 
-
         26      """ Class to process background information 
- 27      """ 
-
         28 -    def __init__(self, xs, ys):  
-
         29          """ 
- 30          initialization 
- 31   
- 32          Argument: 
- 33          - xs    :   list of x 
- 34          - ys    :   list of y 
- 35   
- 36          Return  :   None 
- 37          """ 
- 38          if self.__class__.__name__ == "BackgroundProcess": 
- 39              raise NotImplementedError("Virtual Base Class %-10s Cannot Be Initialized") \ 
- 40                  %(self.__class__.__name__) 
- 41   
- 42          self._xs = xs 
- 43          self._ys = ys 
- 44   
- 45          return 
-
         46   
- 47   
-
         48 -class XrayBackgroundProcess(BackgroundProcess): 
-
         49      """ 
- 50      Class to process background for Xray 
- 51      """ 
-
         52 -    def __init__(self, xs, ys): 
-
         53          """ 
- 54          initialization 
- 55   
- 56          Argument: 
- 57          - xs    :   list of x 
- 58          - ys    :   list of y 
- 59   
- 60          Return  :   None 
- 61          """ 
- 62          BackgroundProcess.__init__(self, xs, ys) 
- 63   
- 64          return 
-
         65   
- 66   
-
         67 -    def selectBackgroundPoints(self, standardname, wavelength): 
-
         68          """ 
- 69          Select the background points according to  
- 70          a list of input 2-theta value 
- 71   
- 72          Argument: 
- 73          - twothetalist  :   list of float 
- 74   
- 75          Return          :   list of 2-tuple 
- 76          """ 
- 77   
- 78          backgroundpoints = genStandardBackground(standardname, wavelength, self._xs, self._ys) 
- 79   
- 80          return backgroundpoints 
-
         81   
- 82   
- 83  # END-CLASS-DEF XrayBackgroundProcess(BackgroundProcess) 
- 84   
- 85   
-
         86 -def genBackground(backgrounds, xs, ys): 
-
         87      """ 
- 88      Generate backgrounds according to a background list in same unit 
- 89   
- 90      Argument: 
- 91      - backgrounds   :   list, of float 
- 92      - xs            :   list, of float 
- 93      - ys            :   list, of float 
- 94      """ 
- 95      import bisect 
- 96   
- 97      # 1. Prepare 
- 98      startindex = 0 
- 99      finalindex = len(xs)-1 
-100      backgrounds = sorted(backgrounds) 
-101      selectbkgds = [] 
-102   
-103      # 2.  
-104      for bkgdvar in backgrounds: 
-105          index = bisect.bisect_left(xs, bkgdvar, startindex, finalindex) 
-106          if index <= finalindex: 
-107              if xs[index]-bkgdvar < bkgdvar-xs[index-1]: 
-108                  # close to xindex 
-109                  pass 
-110              else: 
-111                  # close to xindex-1 
-112                  index = index-1 
-113              xp = xs[index] 
-114              yp = ys[index] 
-115              selectbkgds.append( (xp, yp) ) 
-116              # Assume: that the background points are more sparse than data 
-117              startindex = index + 1 
-118          # LOOP-OVER 
-119   
-120      return selectbkgds 
-
        121   
-122   
-
        123 -def convertQbackground(qbackgrounds, wavelength):    
-
        124      """ 
-125      Convert background points in Q to 2-theta 
-126   
-127      Argument: 
-128      - qbackgrounds  :   list, of float 
-129      - wavelength    :   float 
-130   
-131      Return          :   list, of float 
-132      """ 
-133      import math 
-134       
-135      backgrounds = [] 
-136      for q in qbackgrounds: 
-137          twotheta = 2*math.asin(q*wavelength*0.25/math.pi)*180*0.5/math.pi 
-138          backgrounds.append(twotheta) 
-139   
-140      return backgrounds 
-141   
-142   
-
        143 -def genStandardBackground(standardname, wavelength, xs, ys): 
-
        144      """ 
-145      Generate standard's background 
-146   
-147      Argument: 
-148      - standardname  :   str,  
-149      - wavelength    :   float, 
-150   
-151      Return          :   list of background points (tuple) 
-152      """ 
-153      import qbackgrounds as QB 
-154      try: 
-155          qbackgroundlist = QB.Qbackground[standardname.upper()] 
-156      except KeyError, err: 
-157          errmsg = "Standard %-10s Has No Q-Background Set Up.  Contact Developer"% (standardname) 
-158          raise NotImplementedError(errmsg) 
-159          
-160      backgrounds = convertQbackground(qbackgroundlist, wavelength) 
-161   
-162      selectbkgds = genBackground(backgrounds, xs, ys) 
-163   
-164      return selectbkgds 
-
        165   
-166   
-
        168      """ 
-169      Generate an interpolated background for all the Constant-Wavelength pattern  
-170      in an Fit instance 
-171   
-172      Restriction:  TOF data won't be replaced at all! 
-173   
-174      Arguments: 
-175      - myfit :   diffpy.rietveldapi.Fit instance 
-176   
-177      Return  :   None 
-178      """ 
-179      REBackground = diffpy.srrietveld.myEngine.getRietveldEngineModule("backgrounds") 
-180      import diffpy.srrietveld.autobackgroundselect  as ABS 
-181      import diffpy.rietveldapi.patterns      as APIPattern 
-182   
-183      try: 
-184          isinstance(myfit._reflectionslist, list) 
-185      except AttributeError, err: 
-186          wmsg = "Warning: No Reflection List! (From utilbackground.replaceInterpolatedBackground())" 
-187          print wmsg 
-188          return 
-189   
-190      # 1. Check whether it is necessary to replace background (TOF or CW) 
-191      numcomps = myfit.getNumComponents() 
-192      numcwpat = 0 
-193      for nindex in xrange(numcomps): 
-194          comp = myfit.getComponent(nindex) 
-195          pat  = comp.getPattern() 
-196          if isinstance(pat, APIPattern.CWPattern): 
-197              numcwpat += 1 
-198      # LOOP-OVER: for nindex 
-199   
-200      if numcwpat == 0: 
-201          # No Constant wave-length pattern, No need to replace 
-202          return 
-203      elif numcwpat == 1: 
-204          # FIXME - This will be cleaned later because it only applies to single pattern 
-205   
-206          # 2. Get Exact Peaks according to Theoretic Peaks (Reflections) 
-207          peakposlist = [] 
-208          for reflectdict in myfit._reflectionslist: 
-209              tupleslist = reflectdict.values() 
-210              for tup in tupleslist: 
-211                  peakposlist.append(tup[0]) 
-212          peakposlist = sorted(peakposlist) 
-213   
-214          # 3. Generate background points automatically 
-215          numcomps = myfit.getNumComponents() 
-216          for nindex in xrange(numcomps): 
-217              comp = myfit.getComponent(nindex) 
-218              pat  = comp.getPattern() 
-219   
-220              if isinstance(pat, APIPattern.CWPattern): 
-221                  xobs, yobs = pat.getObservedPattern() 
-222   
-223                  # 2.1 Pattern background selection 
-224                  resolution = pat.getResolution() 
-225                  excludedregionslist = pat.getExcludedRegion() 
-226                  bkgdlist = ABS.autoBackgroundSelection(xobs, yobs, peakposlist, resolution) 
-227                  bkgdlist = ABS.filterBackgroundPoints(bkgdlist, excludedregionslist) 
-228   
-229                  # 2.2 Set up the new background 
-230                  newbkgd = REBackground.InterpolatedBackground("Linear") 
-231                  newbkgd.addBackgroundPoints(bkgdlist) 
-232                  comp.setBackground(newbkgd) 
-233          # LOOP OVER:  for nindex in xrange(numcomps) 
-234    
-235      else: 
-236          # Multiple-Pattern Case: Single phase or multiple phase 
-237          numcomps = myfit.getNumComponents() 
-238          for nindex in xrange(numcomps): 
-239              comp = myfit.getComponent(nindex) 
-240              pat = comp.getPattern() 
-241   
-242              if isinstance(pat, APIPattern.CWPattern): 
-243                  # 1. Generate peak position list: cannot be sure this is same for all patterns 
-244                  peakposlist = [] 
-245                  for reflectdict in pat.getReflections(): 
-246                      tupleslist = reflectdict.values() 
-247                      for tup in tupleslist: 
-248                          peakposlist.append(tup[0]) 
-249                      # LOOP-OVER 
-250                  # LOOP-OVER 
-251                  peakposlist = sorted(peakposlist) 
-252   
-253                  # 2. Select pattern background 
-254                  xobs, yobs = pat.getObservedPattern() 
-255   
-256                  resolution = pat.getResolution() 
-257                  excludedregionslist = pat.getExcludedRegion() 
-258   
-259                  bkgdlist = ABS.autoBackgroundSelection(xobs, yobs, peakposlist, resolution) 
-260                  bkgdlist = ABS.filterBackgroundPoints(bkgdlist, excludedregionslist) 
-261   
-262                  # 2.2 Set up the new background 
-263                  newbkgd = REBackground.InterpolatedBackground("Linear") 
-264                  newbkgd.addBackgroundPoints(bkgdlist) 
-265                  comp.setBackground(newbkgd) 
-266              # END-IF 
-267          # LOOP OVER:  for nindex in xrange(numcomps) 
-268   
-269      # END-IF-ELSE 
-270   
-271      return 
-
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        Class BackgroundProcess

        source code

        -
        Known Subclasses:
        -
        - XrayBackgroundProcess -
        - -
        -Class to process background information

        - - - - - - - - - - -
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        (Constructor) -

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-initialization
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-- xs    :   list of x
-- ys    :   list of y
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        Class XrayBackgroundProcess

        source code

        -
        -BackgroundProcess --+
-                    |
-                   XrayBackgroundProcess
-
        - -
        -Class to process background for Xray

        - - - - - - - - - - - - - -
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        Instance Methods[hide private]
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        __init__(self, - xs, - ys)
        - initialization...        		 - source code - -
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        - Select the background points according to ...        		 - source code - -
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        Method Details[hide private]
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        __init__(self, - xs, - ys) -
        (Constructor) -

        -         		source code  -
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-initialization
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-Argument:
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-- ys    :   list of y
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        selectBackgroundPoints(self, - standardname, - wavelength) -

        -         		source code  -
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        -
-Select the background points according to 
-a list of input 2-theta value
-
-Argument:
-- twothetalist  :   list of float
-
-Return          :   list of 2-tuple
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        Module utilinstrument

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        -Utility methods for Instrument object

        - - - - - - - - - - - - - -
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        Functions[hide private]
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        genInstrument(myfit)
        - Generate an instrument from a Fit object and set it up by myfit...        		 - source code - -
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        -Generate an instrument from a Fit object and set it up by myfit
-The Fit object is assumed to have single type of Patterns, i.e.,
-(1) multiple patterns: only TOF is allowed
-(2) single pattern: X-ray, TOF, or NeutronCW
-
-Argument:
-- myfit :   Fit
-
-Return  :   Instrument
-
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        genXMLGenerator(myinstrument) -

        -         		source code  -
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        -Generate XML generator according to 
-instrument's type
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-Argument:
-- myinstrument  :   Instrument
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-Return          :   XMLGenerator
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        -
        -  1  #!/usr/bin/env python 
-  2  ################################################################################ 
-  3  # 
-  4  # diffpy.srrietveld by DANSE Diffraction group 
-  5  #               Simon J. L. Billinge 
-  6  #           (c) 2008 trustees of the Columbia University in the City of New York 
-  7  # All rights reserved. 
-  8  # 
-  9  # File coded by:    Wenduo Zhou 
- 10  # 
- 11  # See AUTHORS.txt for a list of people who contributed. 
- 12  # See LICENSE.txt for license information. 
- 13  # 
- 14  ################################################################################ 
- 15   
- 16  """ Utility methods for Instrument object 
- 17  """ 
- 18   
- 19  __id__ = "$Id: utilinstrument.py 2921 2009-03-20 15:43:13Z wdzhou $" 
- 20   
- 21  import diffpy.srrietveld.instrument as IT 
- 22   
-
         23 -def genInstrument(myfit): 
-
         24      """ Generate an instrument from a Fit object and set it up by myfit 
- 25      The Fit object is assumed to have single type of Patterns, i.e., 
- 26      (1) multiple patterns: only TOF is allowed 
- 27      (2) single pattern: X-ray, TOF, or NeutronCW 
- 28       
- 29      Argument: 
- 30      - myfit :   Fit 
- 31   
- 32      Return  :   Instrument 
- 33      """ 
- 34      import diffpy.rietveldapi.patterns as APP 
- 35   
- 36      # 1. Analyze Fit 
- 37      numcomps = myfit.getNumComponents() 
- 38   
- 39      if numcomps == 1: 
- 40          # 1. All instruments are possible 
- 41          mypattern = myfit.getComponent(0).getPattern() 
- 42   
- 43          if isinstance(mypattern, APP.CWXPattern): 
- 44              myinstrument = IT.XrayInstrument() 
- 45          elif isinstance(mypattern, APP.CWNPattern): 
- 46              myinstrument = IT.NeutronCWInstrument() 
- 47          elif isinstance(mypattern, APP.TOFPattern): 
- 48              myinstrument = IT.TOFInstrument() 
- 49          else: 
- 50              errmsg = "Pattern %-10s Is Not Supported" % \ 
- 51                      (mypattern.__class__.__name__) 
- 52              raise NotImplementedError, errmsg 
- 53          # END-IF-ELSE 
- 54   
- 55      elif numcomps > 1: 
- 56          # 2. TOF multiple bank 
- 57          alltof = True 
- 58          for cindex in range(numcomps): 
- 59              mypattern =  myfit.getComponent(cindex).getPattern() 
- 60              if not isinstance(mypattern, APP.TOFPattern): 
- 61                  alltof = False 
- 62                  break 
- 63          # LOOP-OVER 
- 64   
- 65          if alltof is True: 
- 66              myinstrument = IT.TOFInstrument() 
- 67          else: 
- 68              errmsg = "Not every pattern is TOF.  Instrument information is confused" 
- 69              raise errmsg 
- 70           
- 71      else: 
- 72          # 3. no pattern 
- 73          errmsg = "No component defined in Fit" 
- 74          raise NotImplementedError, errmsg 
- 75   
- 76      # 2. Set up Instrument 
- 77      myinstrument.importFromFit(myfit) 
- 78   
- 79      return myinstrument 
-
         80   
- 81   
-
         82 -def genXMLGenerator(myinstrument): 
-
         83      """ Generate XML generator according to  
- 84      instrument's type 
- 85   
- 86      Argument: 
- 87      - myinstrument  :   Instrument 
- 88   
- 89      Return          :   XMLGenerator 
- 90      """ 
- 91      import diffpy.srrietveld.xmlgenerator as XMLG 
- 92   
- 93      if isinstance(myinstrument, IT.XrayInstrument): 
- 94          xmlgen = XMLG.XrayInstrumentXMLGenerator(myinstrument, True) 
- 95      elif isinstance(myinstrument, IT.TOFInstrument): 
- 96          xmlgen = XMLG.TOFXMLGenerator(myinstrument, True) 
- 97      elif isinstance(myinstrument, IT.NeutronCWInstrument): 
- 98          xmlgen = XMLG.NeutronCWGenerator(myinstrument, True) 
- 99      else: 
-100          errmsg = "Instrument of type %-10s is not supported" % \ 
-101                  myinstrument.__class__.__name__ 
-102          raise errmsg 
-103   
-104      return xmlgen 
-
        105   
-
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        Module utilplot

        source code

        -Utility functions for plotting

        - - - - - - - - - - - - - -
        - - - - - -
        Functions[hide private]
        -
        -   - - - - - - -
        caldDiff()
        - Calculate difference between 2 dataset        		 - source code - -
        - -
        -   - - - - - - -
        exportColumnFiles(diffoffset)
        - Export the results to column files for external 2D plotting - tool        		 - source code - -
        - -
        - - - - - - - - - -
        - - - - - -
        Variables[hide private]
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        Source Code for Module srrietveld.utilplot

        -
        - 1  ############################################################################## 
- 2  # 
- 3  # diffpy.srrietveld by DANSE Diffraction group 
- 4  #                   Simon J. L. Billinge 
- 5  #                   (c) 2008 Trustees of the Columbia University 
- 6  #                   in the City of New York.  All rights reserved. 
- 7  # 
- 8  # File coded by:    Wenduo Zhou 
- 9  # 
-10  # See AUTHORS.txt for a list of people who contributed. 
-11  # See LICENSE.txt for license information. 
-12  # 
-13  ############################################################################## 
-14   
-15  """ Utility functions for plotting 
-16  """ 
-17   
-18  __id__ = "$Id: utilplot.py 2899 2009-03-16 19:10:09Z wdzhou $" 
-19   
-
        20 -def caldDiff(): 
-
        21      """ Calculate difference between 2 dataset 
-22      """ 
-23   
-24      return difflist 
-
        25   
-26   
-
        27 -def exportColumnFiles(diffoffset): 
-
        28      """ Export the results to column files for  
-29      external 2D plotting tool 
-30      """ 
-31   
-32      return 
-
        33   
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.utilrapdf-module.html b/static_root/doc/srrietveld/developers/srrietveld.utilrapdf-module.html deleted file mode 100644 index 8daa4c2f..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.utilrapdf-module.html +++ /dev/null @@ -1,206 +0,0 @@ - - - - - srrietveld.utilrapdf - - - - - - - - - - - - - - - - - - - - - - -
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        Module utilrapdf

        source code

        -Utility functions for RAPDF Only

        - - - - - - - - - - -
        - - - - - -
        Functions[hide private]
        -
        -   - - - - - - -
        getRAPDFInstrument()
        - Copy the RAPDF instrument XML file from stored location        		 - source code - -
        - -
        - - - - - - - - - -
        - - - - - -
        Variables[hide private]
        -
        -   - - __id__ = '$Id: utilrapdf.py 2792 2009-03-02 15:56:43Z wdzhou $' -
        - - - - - - -
        - - - - - -
        Function Details[hide private]
        -
        - -
        - -
        - - -
        -

        getRAPDFInstrument() -

        -         		source code  -
        - -

        Copy the RAPDF instrument XML file from stored location

        -

        Argument:

        - Return : XML file name -
        -
        -
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        Source Code for Module srrietveld.utilrapdf

        -
        - 1  ############################################################################## 
- 2  # 
- 3  # diffpy.srrietveld by DANSE Diffraction group 
- 4  #                   Simon J. L. Billinge 
- 5  #                   (c) 2008 Trustees of the Columbia University 
- 6  #                   in the City of New York.  All rights reserved. 
- 7  # 
- 8  # File coded by:    Wenduo Zhou 
- 9  # 
-10  # See AUTHORS.txt for a list of people who contributed. 
-11  # See LICENSE.txt for license information. 
-12  # 
-13  ############################################################################## 
-14  """ 
-15  Utility functions for RAPDF Only 
-16  """ 
-17  __id__ = "$Id: utilrapdf.py 2792 2009-03-02 15:56:43Z wdzhou $" 
-18   
-
        20      """ 
-21      Copy the RAPDF instrument XML file from stored location 
-22   
-23      Argument: 
-24   
-25      Return              :   XML file name 
-26      """ 
-27      # 1. Parse the location of diffpy.srrietveld 
-28      import diffpy.srrietveld 
-29      s = diffpy.srrietveld.__str__() 
-30      terms = s.split() 
-31      for t in terms: 
-32          if t.count("__init__.pyc") == 1: 
-33              s = t 
-34              break 
-35   
-36      location = s.split("__init__.pyc")[0].split("'")[-1]+"XMLs/Instruments/" 
-37      filename = "rapdf.xml" 
-38   
-39      cmd = "cp %-30s ."% (location+filename) 
-40      import os 
-41      os.system(cmd) 
-42   
-43      return filename 
-
        44   
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        Module utilrefineguide

        source code

        -Helping (external) functions for RefineGuide

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Functions[hide private]
        -
        -   - - - - - - -
        genVarName(rootvarname, - varindexlist)
        - Generate a varialbe name according to some rule as:...        		 - source code - -
        - -
        -   - - - - - - -
        activeVariable(fit, - varname, - rietapiobj, - parname)
        - check whether a specific combination as...        		 - source code - -
        - -
        -   - - - - - - -
        sortByAtomNumber(tuplist)
        - Sort a list tuples/lists started with of diffpy.rietveldapi.Atom -objects desending by atoms' atom number.        		 - source code - -
        - -
        -   - - - - - - -
        sortByAtomTag(tuplist)
        - Sort a list tuples/lists started with of diffpy.rietveldapi.Atom -objects desending by atoms' atom tag.        		 - source code - -
        - -
        -   - - - - - - -
        locateSharingSite(atomsdict, - atom)
        - Search in a list of atoms to see whether there is any atom ...        		 - source code - -
        - -
        -   - - - - - - -
        getLatticeInGroup(thefit)
        - Read the Fit, in order to group the Lattices, which -belonged to same experiment togehter.        		 - source code - -
        - -
        -   - - - - - - -
        genAbsorptionCorrectionRefineSetup(fit, - rietobjectslist, - stage)
        - Generate an appropriate absorption correction object...        		 - source code - -
        - -
        -   - - - - - - -
        genADPRefineSetup(fit, - rietobjectslist, - stage)
        - Generate an appropriate ADPRefineSetup object...        		 - source code - -
        - -
        -   - - - - - - -
        genAtomFractionalPositionSetup(fit, - rietobjectslist, - stage)
        - Generate an appropriate atom fractional position refinement setup...        		 - source code - -
        - -
        -   - - - - - - -
        genBackgroundRefineSetup(fit, - rietobjectslist, - stage=1)
        - Generate a proper Background RefineSetup for the specific...        		 - source code - -
        - -
        -   - - - - - - -
        genLatticeRefineSetup(fit, - rietobjectslist, - spcgrp, - stage=1)
        - check the space group so that can generate a proper ...        		 - source code - -
        - -
        -   - - - - - - -
        genPeakShapeRefineSetup(fit, - rietobjectslist, - stage)
        - Exam the type of input Rietveld objects to generate...        		 - source code - -
        - -
        -   - - - - - - -
        genScaleRefineSetup(myfit, - rietobjectslist, - stage=1)
        - Generate Scale-factor refinement setup according to input rietveld - objects        		 - source code - -
        - -
        -   - - - - - - -
        genTOFExpDecayRefinement(myfit, - rietobjectslist, - stage=1)
        - Generate TOF Exponential Decay refinement setup...        		 - source code - -
        - -
        -   - - - - - - -
        genWavelengthRefineSetup(myfit, - rietveldobjects, - stage)
        - Generate zero refinement setup according to ...        		 - source code - -
        - -
        -   - - - - - - -
        genZeroRefineSetup(myfit, - rietveldobjects)
        - Generate zero refinement setup according to ...        		 - source code - -
        - -
        - - - - - - - - - - - - -
        - - - - - -
        Variables[hide private]
        -
        -   - - __id__ = '$Id: utilrefineguide.py 2924 2009-03-20 15:57:45Z wd... -
        -   - - _DEBUGOUTPUT = True -
        - - - - - - -
        - - - - - -
        Function Details[hide private]
        -
        - -
        - -
        - - -
        -

        genVarName(rootvarname, - varindexlist) -

        -         		source code  -
        - - 
        -Generate a varialbe name according to some rule as:
-var_rootvarname__varindexlist
-
-Arguments:
-- rootvarname   :   string, root variable name
-- varindexlist  :   list of integer index
-
-return          :   string, variable name
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        activeVariable(fit, - varname, - rietapiobj, - parname) -

        -         		source code  -
        - - 
        -check whether a specific combination as
-variable name, a Rietvd object and parameter
-is active (existing and turned on) in a Fit instance's 
-
-Arguements
-- fit       :   Fit instance
-- varname   :   string, variable name
-- rietapiobj:   diffpy.rietveldapi object
-- parname   :   string, parameter name
-
-Return      --  Boolean
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        sortByAtomNumber(tuplist) -

        -         		source code  -
        - - 
        -Sort a list tuples/lists started with of diffpy.rietveldapi.Atom 
-objects desending by atoms' atom number.
-If some atoms are of the same atom number, they will be sorted by atom tag
-
-Argument:
-- tuplist   :   list of tuples/lists, [[Rietveld object, Atom, ...], ...]
-
-Return      :   list of tuples/lists, [[Rietveld object, Atom, ...], ...]
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        sortByAtomTag(tuplist) -

        -         		source code  -
        - - 
        -Sort a list tuples/lists started with of diffpy.rietveldapi.Atom 
-objects desending by atoms' atom tag. 
-
-Argument:
-- tuplist   :   list of tuples/lists, [[Rietveld Atom object, ...], ...]
-
-Return      :   list of tuples/lists, [[Rietveld Atom object, ...], ...]
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        locateSharingSite(atomsdict, - atom) -

        -         		source code  -
        - - 
        -Search in a list of atoms to see whether there is any atom 
-on the same atom of the input atom
-
-Argument:
-- atomslist :   dictionary of lists of atoms
-- atom      :   an atom object
-
-Return      :   integer, the ID of the atom with same location
-                         -1 if no such atom is found in the last
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getLatticeInGroup(thefit) -

        -         		source code  -
        - - 
        -Read the Fit, in order to group the Lattices, which
-belonged to same experiment togehter.  
-
-The rule of lattices to be grouped is that they are:
-1. belonged to same instrument
-2. belonged to same phase
-3. belonged to same experiment
-
-Need to consider two situations:
-1. multiple-bank (components)
-2. multiple-phase
-
-Argument:
-- thefit    :   Fit instance
-
-Return      :   tuple of list of n-tuples
-                list for group: lattice, phase, space group, index list
-                list for unit : lattice, space group, index list
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        genAbsorptionCorrectionRefineSetup(fit, - rietobjectslist, - stage) -

        -         		source code  -
        - - 
        -Generate an appropriate absorption correction object
-for input absorption correction(s)
-
-Argument:
-- fit   :   diffpy.srrietveld Fit instance
-- rietobjectslist:  list, of list
-- stage :   int
-
-Return  :   AbsorptionCorrectionRefineSetup
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        genADPRefineSetup(fit, - rietobjectslist, - stage) -

        -         		source code  -
        - - 
        -Generate an appropriate ADPRefineSetup object
-according to the ADP's type 
-
-Arguments:
-- fit             :   diffpy.rietveldapi.Fit instance
-- rietobjectslist :   list, of list [ [adp, ..], [adp, ..], ...]
-
-Return      :   one of [IsotropicADPRefineSetup, AnisotropicADPRefineSetup]
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        genAtomFractionalPositionSetup(fit, - rietobjectslist, - stage) -

        -         		source code  -
        - - 
        -Generate an appropriate atom fractional position refinement setup
-
-Arguments:
-- fit             :   diffpy.rietveldapi.Fit instance
-- rietobjectslist :   list, of list [ [adp, ..], [adp, ..], ...]
-
-Return      :   one of [IsotropicADPRefineSetup, AnisotropicADPRefineSetup]
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        genBackgroundRefineSetup(fit, - rietobjectslist, - stage=1) -

        -         		source code  -
        - - 
        -Generate a proper Background RefineSetup for the specific
-background type
-
-Arguments:
-- fit           :   diffpy.rietveldapi.Fit instance
-- rietobjectslist : list, of list, 
-- stage         :   integer, some types Background should be refined in different stages
-
-Return      --   BackgroundGuide instance
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        genLatticeRefineSetup(fit, - rietobjectslist, - spcgrp, - stage=1) -

        -         		source code  -
        - - 
        -check the space group so that can generate a proper 
-LatticeRefineSetup
-
-Arguments:
-- fit       :   diffpy.rietveldapi.Fit instance
-- rietobjectslist:  list of list
-- spcgrp    :   string, space group
-
-return      :   LatticeGuide instance
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        genPeakShapeRefineSetup(fit, - rietobjectslist, - stage) -

        -         		source code  -
        - - 
        -Exam the type of input Rietveld objects to generate
-the proper RefineSetup
-
-Arguments:
-- fit            : diffpy.rietveldapi.Fit instance
-- rietobjectslist: list, of list [ [peak-profile], [peak-profile], ...]
-- stage          : int
-
-Assumption: all Rietveld objects as rietobjectslist's any item's
-first time should be of same type
-
-Return      --   PeakProfileGuide instance
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        genTOFExpDecayRefinement(myfit, - rietobjectslist, - stage=1) -

        -         		source code  -
        - - 
        -Generate TOF Exponential Decay refinement setup
-according to input Rietveld objects
-
-Argument:
-- myfit :   Fit
-- rietobjectslist   :   list of list of Rietveld objects
-- stage :   int
-
-Return  :   TOFExpDecayRefineSetup
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        genWavelengthRefineSetup(myfit, - rietveldobjects, - stage) -

        -         		source code  -
        - - 
        -Generate zero refinement setup according to 
-input rietveldobjects
-
-Argument:
-- rietveldobjects   :   list, of list [ [pattern, ...], [pattern, ...], ...]
-
-Return              :   RefineSetup
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        genZeroRefineSetup(myfit, - rietveldobjects) -

        -         		source code  -
        - - 
        -Generate zero refinement setup according to 
-input rietveldobjects
-
-Argument:
-- rietveldobjects   :   list, of list [ [pattern, ...], [pattern, ...], ...]
-
-Return              :   RefineSetup
-
-
        -
        -
        -
        -
        -
        - - - - - - -
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        Variables Details[hide private]
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        Source Code for Module srrietveld.utilrefineguide

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2008 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Wenduo Zhou 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14   
- 15  """ Helping (external) functions for RefineGuide 
- 16  """ 
- 17   
- 18  __id__ = "$Id: utilrefineguide.py 2924 2009-03-20 15:57:45Z wdzhou $" 
- 19   
- 20  import refinesetup as US 
- 21  from diffpy.refinementapi.exceptiontools import verifyType 
- 22       
- 23  _DEBUGOUTPUT = True 
- 24   
-
         25 -def genVarName(rootvarname, varindexlist): 
-
         26      """ Generate a varialbe name according to some rule as: 
- 27      var_rootvarname__varindexlist 
- 28       
- 29      Arguments: 
- 30      - rootvarname   :   string, root variable name 
- 31      - varindexlist  :   list of integer index 
- 32   
- 33      return          :   string, variable name 
- 34      """ 
- 35      # 1. Input argument validity check 
- 36      verifyType(rootvarname, str) 
- 37   
- 38      if varindexlist is None: 
- 39          varindexlist = [] 
- 40      else: 
- 41          if not (isinstance(varindexlist, list) or isinstance(varindexlist, tuple)): 
- 42              errmsg = "genVarName(..., varindexlist):  " + \ 
- 43                      "input varindexlist is not list or tuple: %-10s" % (varindexlist.__class__.__name__) 
- 44              raise FitConfigurationError(errmsg) 
- 45      # END-IF-ELSE 
- 46       
- 47      # 2. get index string 
- 48      indstring = "" 
- 49      for term in varindexlist: 
- 50          substring = "_"+str(int(term)) 
- 51          indstring += substring 
- 52   
- 53      # 3. generate varname 
- 54      varname = "vAr_"+rootvarname+indstring 
- 55   
- 56      return varname 
-
         57   
- 58   
-
         59 -def activeVariable(fit, varname, rietapiobj, parname): 
-
         60      """ check whether a specific combination as 
- 61      variable name, a Rietvd object and parameter 
- 62      is active (existing and turned on) in a Fit instance's  
- 63   
- 64      Arguements 
- 65      - fit       :   Fit instance 
- 66      - varname   :   string, variable name 
- 67      - rietapiobj:   diffpy.rietveldapi object 
- 68      - parname   :   string, parameter name 
- 69   
- 70      Return      --  Boolean 
- 71      """ 
- 72      opexist = False 
- 73   
- 74      # print "activeVariable()" 
- 75      # print "input variable name = %-10s,  parameter name = %-10s"% (varname, parname) 
- 76      # print fit._refinedb 
- 77   
- 78      if fit.getVariableStatus(varname) is True: 
- 79          oplist = fit.getVariableInformation(varname) 
- 80          opexist = False 
- 81          for op in oplist: 
- 82              if rietapiobj == op[0] and parname == op[1]: 
- 83                  opexist = True 
- 84                  break 
- 85          # End -- for op in oplist 
- 86      # End -- if fit.get.... 
- 87   
- 88      return opexist 
-
         89   
- 90   
-
         91 -def sortByAtomNumber(tuplist): 
-
         92      """ Sort a list tuples/lists started with of diffpy.rietveldapi.Atom  
- 93      objects desending by atoms' atom number. 
- 94      If some atoms are of the same atom number, they will be sorted by atom tag 
- 95   
- 96      Argument: 
- 97      - tuplist   :   list of tuples/lists, [[Rietveld object, Atom, ...], ...] 
- 98   
- 99      Return      :   list of tuples/lists, [[Rietveld object, Atom, ...], ...] 
-100      """ 
-101      from atominfo import getAtomNumberByName 
-102   
-103      sortedatomslist = [] 
-104      atomnumdict = {}  
-105   
-106      # 1. genearte an atom dictionary for sorting by atom number 
-107      for tup in tuplist: 
-108          atom = tup[1] 
-109          atomname = atom.getElement() 
-110          atomnum = getAtomNumberByName(atomname) 
-111          if not atomnumdict.has_key(atomnum): 
-112              atomnumdict[atomnum] = [] 
-113          atomnumdict[atomnum].append(tup) 
-114      # LOOP-OVER 
-115       
-116      # 2. sort 
-117      sortedatomnumslist = sorted(atomnumdict.keys()) 
-118      N = len(sortedatomnumslist) 
-119      for index in xrange(N): 
-120          atomnum = sortedatomnumslist[N-1-index] 
-121          subtuplist = atomnumdict[atomnum] 
-122          subatomslist = sortByAtomTag(subtuplist) 
-123          sortedatomslist.extend(subatomslist) 
-124   
-125      # 3. return 
-126      return sortedatomslist 
-
        127   
-128  # END -- sortByAtomNumber(atomslist) 
-129   
-130   
-
        131 -def sortByAtomTag(tuplist): 
-
        132      """ Sort a list tuples/lists started with of diffpy.rietveldapi.Atom  
-133      objects desending by atoms' atom tag.  
-134   
-135      Argument: 
-136      - tuplist   :   list of tuples/lists, [[Rietveld Atom object, ...], ...] 
-137   
-138      Return      :   list of tuples/lists, [[Rietveld Atom object, ...], ...] 
-139      """ 
-140      from atominfo import getAtomNumberByName 
-141   
-142      sortedtuplist = [] 
-143      atomtagdict = {}  
-144   
-145      # 1. genearte an atom dictionary for sorting by atom tag 
-146      for tup in tuplist: 
-147          atom = tup[1] 
-148          atomtag = atom.getTag() 
-149          if not atomtagdict.has_key(atomtag): 
-150              atomtagdict[atomtag] = [] 
-151          atomtagdict[atomtag].append( tup ) 
-152      # LOOP-OVER 
-153       
-154      # 2. sort 
-155      sortedatomtagslist = sorted(atomtagdict.keys()) 
-156      N = len(sortedatomtagslist) 
-157      for index in xrange(N): 
-158          atomtag = sortedatomtagslist[index] 
-159          subtupslist = atomtagdict[atomtag] 
-160          sortedtuplist.extend(subtupslist) 
-161   
-162      # 3. return 
-163      return sortedtuplist 
-
        164   
-165  # END -- sortByAtomNumber(atomslist) 
-166   
-167   
-
        168 -def locateSharingSite(atomsdict, atom): 
-
        169      """ Search in a list of atoms to see whether there is any atom  
-170      on the same atom of the input atom 
-171   
-172      Argument: 
-173      - atomslist :   dictionary of lists of atoms 
-174      - atom      :   an atom object 
-175   
-176      Return      :   integer, the ID of the atom with same location 
-177                               -1 if no such atom is found in the last 
-178      """ 
-179      rid = -1 
-180   
-181      for id in atomsdict.keys(): 
-182          atomslist = atomsdict[id] 
-183          tempatom  = atomslist[0] 
-184   
-185          tx, ty, tz = tempatom.getFractionalCoordinates() 
-186          ax, ay, az = atom.getFractionalCoordinates() 
-187   
-188          if ( abs(tx-ax) < ETA ) and ( abs(ty-ay) < ETA ) and ( abs(tz-az) < ETA ): 
-189              rid = id 
-190              break 
-191   
-192      return rid 
-
        193   
-194  # END -- locateSharingSite 
-195   
-196   
-
        197 -def getLatticeInGroup(thefit): 
-
        198      """ Read the Fit, in order to group the Lattices, which 
-199      belonged to same experiment togehter.   
-200   
-201      The rule of lattices to be grouped is that they are: 
-202      1. belonged to same instrument 
-203      2. belonged to same phase 
-204      3. belonged to same experiment 
-205   
-206      Need to consider two situations: 
-207      1. multiple-bank (components) 
-208      2. multiple-phase 
-209   
-210      Argument: 
-211      - thefit    :   Fit instance 
-212   
-213      Return      :   tuple of list of n-tuples 
-214                      list for group: lattice, phase, space group, index list 
-215                      list for unit : lattice, space group, index list 
-216      """ 
-217      import instrument as IM 
-218   
-219      # 1. Init:  components is a list of components in same experiment 
-220      #           so the lattices under them should be constraint 
-221      componentslist = thefit.getComponentByExperiment() 
-222      groupdictlist = [] 
-223      for gindex in xrange( len(componentslist) ): 
-224          groupdict = {} 
-225          groupdict["Component"] = componentslist[gindex] 
-226          groupdict["PhaseDict"] = [] 
-227          groupdictlist.append( groupdict )  
-228      # LOOP-OVER 
-229   
-230      # 2. Group them 
-231      for groupdict in groupdictlist: 
-232   
-233          # 2.1 Init 
-234          phanamelist = [] 
-235           
-236          # 2.2 
-237          for component in groupdict["Component"]: 
-238              numphase = component.getNumPhases() 
-239              for pindex in xrange(numphase): 
-240                  # 2.2.1 read information 
-241                  thephase = component.getPhase(pindex) 
-242                  thespcgrp = thephase.getSpaceGroup() 
-243                  thelattice = thephase.getLattice() 
-244                  phasename = thephase.getName() 
-245   
-246                  # 2.2.2 see if the phase dict is set up or not 
-247                  if not phasename in phanamelist: 
-248                      phasedict = {} 
-249                      phasedict["Lattice"] = [] 
-250                      phasedict["Spacegroup"] = thespcgrp 
-251                      phanamelist.append( phasename ) 
-252                  # LOOP-OVER 
-253                  groupdict["PhaseDict"].append( phasedict ) 
-254   
-255                  # 2.2.3 append 
-256                  phasedict["Lattice"].append( thelattice) 
-257              # LOOP-OVER 
-258          # LOOP-OVER 
-259   
-260      # LOOP-OVER 
-261   
-262      # 3. Clean the result for return 
-263      rietobjectslist = [] 
-264      for groupdict in groupdictlist: 
-265          for phasedict in groupdict["PhaseDict"]: 
-266              rietobjects = ( phasedict["Lattice"], phasedict["Spacegroup"] ) 
-267              rietobjectslist.append( rietobjects ) 
-268          # LOOP-OVER 
-269      # LOOP-OVER 
-270   
-271      return rietobjectslist 
-
        272   
-273   
-
        274 -def genAbsorptionCorrectionRefineSetup(fit, rietobjectslist, stage): 
-
        275      """ Generate an appropriate absorption correction object 
-276      for input absorption correction(s) 
-277   
-278      Argument: 
-279      - fit   :   diffpy.srrietveld Fit instance 
-280      - rietobjectslist:  list, of list 
-281      - stage :   int 
-282   
-283      Return  :   AbsorptionCorrectionRefineSetup 
-284      """ 
-285      import diffpy.rietveldapi.absorptioncorrections as ABC 
-286   
-287      abscor = rietobjectslist[0][0] 
-288   
-289      if isinstance(abscor, ABC.AbsorptionCorrection): 
-290          rietrefinesetup = US.AbsorptionCorrectionRefineSetup(fit, rietobjectslist, stage) 
-291   
-292      else: 
-293          errmsg = "Class %-30s Is Not Supported At This Moment! Contact Developers" % \ 
-294              (self.__class__.__name__) 
-295          raise NotImplementedError(errmsg) 
-296      # END-IF-ELSE 
-297   
-298      return rietrefinesetup 
-
        299   
-300   
-
        301 -def genADPRefineSetup(fit, rietobjectslist, stage): 
-
        302      """ Generate an appropriate ADPRefineSetup object 
-303      according to the ADP's type  
-304   
-305      Arguments: 
-306      - fit             :   diffpy.rietveldapi.Fit instance 
-307      - rietobjectslist :   list, of list [ [adp, ..], [adp, ..], ...] 
-308   
-309      Return      :   one of [IsotropicADPRefineSetup, AnisotropicADPRefineSetup] 
-310      """ 
-311      import diffpy.rietveldapi.adps as ADPAPI 
-312   
-313      rietobj = rietobjectslist[0][0] 
-314   
-315      if isinstance(rietobj, ADPAPI.IsotropicAtomicDisplacementFactor): 
-316          rietunitrefinesetup = US.IsotropicADPRefineSetup(fit, rietobjectslist, stage) 
-317   
-318      elif isinstance(rietobj, ADPAPI.AnisotropicAtomicDisplacementFactor): 
-319          rietunitrefinesetup = US.AnisotropicADPRefineSetup(fit, rietobjectslist, stage) 
-320   
-321      else: 
-322          errmsg = "genADPRefineSetup():  Input rietobj is of type %-20s is NOT Allowed!" % \ 
-323                  (rietobj.__class__.__name__) 
-324          raise FitConfigurationError, errmsg 
-325      # END-IF-ELSE 
-326   
-327      return rietunitrefinesetup 
-
        328   
-329   
-
        330 -def genAtomFractionalPositionSetup(fit, rietobjectslist, stage): 
-
        331      """ Generate an appropriate atom fractional position refinement setup 
-332   
-333      Arguments: 
-334      - fit             :   diffpy.rietveldapi.Fit instance 
-335      - rietobjectslist :   list, of list [ [adp, ..], [adp, ..], ...] 
-336   
-337      Return      :   one of [IsotropicADPRefineSetup, AnisotropicADPRefineSetup] 
-338      """ 
-339      import diffpy.rietveldapi.atoms as APIAtom 
-340   
-341      testrietobj = rietobjectslist[0][0] 
-342   
-343      if isinstance(testrietobj, APIAtom.Atom): 
-344          rietrefinesetup = US.AtomFractionalCoordinateRefineSetup(fit, rietobjectslist, stage) 
-345      else: 
-346          errmsg = "genADPRefineSetup():  Input rietobj is of type %-20s is NOT Allowed!" % \ 
-347                  (rietobj.__class__.__name__) 
-348          raise FitConfigurationError, errmsg 
-349      # END-IF-ELSE 
-350   
-351      return rietrefinesetup 
-
        352   
-353   
-
        354 -def genBackgroundRefineSetup(fit, rietobjectslist, stage=1): 
-
        355      """ Generate a proper Background RefineSetup for the specific 
-356      background type 
-357   
-358      Arguments: 
-359      - fit           :   diffpy.rietveldapi.Fit instance 
-360      - rietobjectslist : list, of list,  
-361      - stage         :   integer, some types Background should be refined in different stages 
-362   
-363      Return      --   BackgroundGuide instance 
-364      """ 
-365      import diffpy.rietveldapi.backgrounds as BG 
-366   
-367      background = rietobjectslist[0][0]  
-368   
-369      if isinstance(background, BG.InterpolatedBackground): 
-370          bguide = US.InterpolatedBackgroundRefineSetup(fit, rietobjectslist, stage) 
-371   
-372      elif isinstance(background, BG.PolynomialBackground): 
-373          bguide = US.PolynomialBackgroundRefineSetup(fit, rietobjectslist, stage) 
-374   
-375      else: 
-376          errmsg = "genBackgroundRefineSetup():  background type = %-20s will be implemented" % \ 
-377              (background.__class__.__name__) 
-378          raise NotImplementedError(errmsg) 
-379      # END-IF-ELSE 
-380   
-381      return bguide 
-
        382   
-383   
-
        384 -def genLatticeRefineSetup(fit, rietobjectslist, spcgrp, stage = 1): 
-
        385      """ check the space group so that can generate a proper  
-386      LatticeRefineSetup 
-387   
-388      Arguments: 
-389      - fit       :   diffpy.rietveldapi.Fit instance 
-390      - rietobjectslist:  list of list 
-391      - spcgrp    :   string, space group 
-392   
-393      return      :   LatticeGuide instance 
-394      """ 
-395      verifyType(spcgrp, str) 
-396   
-397      # 1. get lattice type (7 type) 
-398      import spacegroupinfo as SGI 
-399      lattype = SGI.getCrystalSystemFromSpaceGroup(spcgrp) 
-400   
-401      if lattype == "Monoclinic": 
-402          lguide = US.MonoclinicRefineSetup(fit, rietobjectslist) 
-403      elif lattype == "Cubic": 
-404          lguide = US.CubicRefineSetup(fit, rietobjectslist) 
-405      elif lattype == "Orthorhombic": 
-406          lguide = US.OrthorhombicRefineSetup(fit, rietobjectslist) 
-407      elif lattype == "Trigonal": 
-408          lguide = US.TrigonalRefineSetup(fit, rietobjectslist) 
-409      elif lattype == "Hexagonal": 
-410          lguide = US.HexagonalRefineSetup(fit, rietobjectslist) 
-411      elif lattype == "Tetragonal": 
-412          lguide = US.TetragonalRefineSetup(fit, rietobjectslist) 
-413      else: 
-414          errmsg = "genLatticeRefineSetup():  lattice type = %-20s will be implemented"% (lattype) 
-415          raise NotImplementedError(errmsg) 
-416      # END-IF-ELSE 
-417   
-418      return lguide 
-
        419   
-420   
-
        421 -def genPeakShapeRefineSetup(fit, rietobjectslist, stage): 
-
        422      """ Exam the type of input Rietveld objects to generate 
-423      the proper RefineSetup 
-424   
-425      Arguments: 
-426      - fit            : diffpy.rietveldapi.Fit instance 
-427      - rietobjectslist: list, of list [ [peak-profile], [peak-profile], ...] 
-428      - stage          : int 
-429   
-430      Assumption: all Rietveld objects as rietobjectslist's any item's 
-431      first time should be of same type 
-432   
-433      Return      --   PeakProfileGuide instance 
-434      """ 
-435      import diffpy.rietveldapi.peakprofiles as PP 
-436   
-437      peakprof = rietobjectslist[0][0] 
-438   
-439      if isinstance(peakprof, PP.CWSymmPseudoVoigtProfile): 
-440          pguide = US.RegularPseudoVoigtRefineSetup(fit, rietobjectslist, stage) 
-441   
-442      elif isinstance(peakprof, PP.TCHPseudoVoigtProfile): 
-443          pguide = US.TCHPseudoVoigtRefineSetup(fit, rietobjectslist, stage) 
-444   
-445      elif isinstance(peakprof, PP.SplitPseudoVoigtProfile): 
-446          pguide = US.SplitPseudoVoigtSetup(fit, rietobjectslist, stage) 
-447   
-448      elif isinstance(peakprof, PP.ConstantWaveSymmetricPeakProfile): 
-449          pguide = US.ConstantWaveSymmetricPeakShapeRefineSetup(fit, rietobjectslist,  
-450                  stage) 
-451   
-452      elif isinstance(peakprof, PP.PseudoVoigtExpDSpacing): 
-453          pguide = US.PseudoVoigtExpDSpacingRefineSetup(fit, rietobjectslist, stage) 
-454   
-455      elif isinstance(peakprof, PP.PseudoVoigtExp): 
-456          pguide = US.TOFPseudoVoigtRefinement(fit, rietobjectslist, stage) 
-457   
-458      elif isinstance(peakprof, PP.TOFPseudoVoigtIkedaCarpenter): 
-459          pguide = US.TOFPseudoVoigtRefinement(fit, rietobjectslist, stage) 
-460   
-461      else: 
-462          errmsg = "genPeakShapeSetup():  PeakProfile type = %-20s will be implemented"% \ 
-463              (peakprof.__class__.__name__) 
-464          raise NotImplementedError(errmsg) 
-465      # END-IF-ELSE 
-466   
-467      return pguide 
-
        468   
-469   
-
        470 -def genScaleRefineSetup(myfit, rietobjectslist, stage = 1): 
-
        471      """ Generate Scale-factor refinement setup according to input rietveld objects 
-472      """ 
-473      refinesetup = US.ScaleFactorRefineSetup(myfit, rietobjectslist, stage) 
-474   
-475      return refinesetup 
-
        476   
-477   
-
        478 -def genTOFExpDecayRefinement(myfit, rietobjectslist, stage = 1): 
-
        479      """ Generate TOF Exponential Decay refinement setup 
-480      according to input Rietveld objects 
-481   
-482      Argument: 
-483      - myfit :   Fit 
-484      - rietobjectslist   :   list of list of Rietveld objects 
-485      - stage :   int 
-486   
-487      Return  :   TOFExpDecayRefineSetup 
-488      """ 
-489      if _DEBUGOUTPUT is True: 
-490          print "4:04: ", rietobjectslist[0][0].__class__.__name__ 
-491      refinesetup = US.TOFExpDecayRefineSetup(myfit, rietobjectslist, stage) 
-492   
-493      return refinesetup 
-
        494   
-495   
-
        496 -def genWavelengthRefineSetup(myfit, rietveldobjects, stage): 
-
        497      """ Generate zero refinement setup according to  
-498      input rietveldobjects 
-499   
-500      Argument: 
-501      - rietveldobjects   :   list, of list [ [pattern, ...], [pattern, ...], ...] 
-502   
-503      Return              :   RefineSetup 
-504      """ 
-505      import diffpy.rietveldapi.patterns as APIPattern 
-506       
-507      testpattern = rietveldobjects[0][0] 
-508   
-509      if isinstance(testpattern, APIPattern.CWPattern): 
-510          refinesetup = US.WavelengthRefineSetup(myfit, rietveldobjects, stage) 
-511   
-512      else: 
-513          errmsg = "Object of Class %-10s Is Not Allowed!" % \ 
-514                  (testpattern.__class__.__name__) 
-515          raise NotImplementedError, errmsg 
-516      # END-IF-ELSE 
-517   
-518      return refinesetup 
-
        519   
-520   
-
        521 -def genZeroRefineSetup(myfit, rietveldobjects): 
-
        522      """ Generate zero refinement setup according to  
-523      input rietveldobjects 
-524   
-525      Argument: 
-526      - rietveldobjects   :   list, of list [ [pattern, ...], [pattern, ...], ...] 
-527   
-528      Return              :   RefineSetup 
-529      """ 
-530      import diffpy.rietveldapi.patterns as APIPattern 
-531   
-532      testpattern = rietveldobjects[0][0] 
-533   
-534      if isinstance(testpattern, APIPattern.ThermalNeutronTOFPattern): 
-535          refinesetup = US.ZeroShiftThermalRefineSetup(myfit, rietveldobjects) 
-536   
-537      elif isinstance(testpattern, APIPattern.TOFPattern) or \ 
-538              isinstance(testpattern, APIPattern.CWPattern): 
-539          refinesetup = US.ZeroShiftRefineSetup(myfit, rietveldobjects) 
-540   
-541      else: 
-542          errmsg = "Object of Class %-10s Is Not Allowed!" % \ 
-543                  (testpattern.__class__.__name__) 
-544          raise NotImplementedError, errmsg 
-545      # END-IF-ELSE 
-546   
-547      return refinesetup 
-
        548   
-
        -
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        Module utilsequentialrefine

        source code

        -Helping methods for sequential fitting or fit a sequence of data by - structure independently

        - - - - - - - - - - - - - - - - -
        - - - - - -
        Functions[hide private]
        -
        -   - - - - - - -
        loadSeqRefineController(savefilename)
        - Load a pickle file to recreate a SeqRefineController object...        		 - source code - -
        - -
        -   - - - - - - -
        getSolutionSeqXML(xmlfilename, - searchparname, - atomname=None)
        - Get the solution from an XML file saved from sequential fitting...        		 - source code - -
        - -
        -   - - - - - - -
        parseStructureSeqXML(xmlfilename)
        - Parse XML file saved from sequential fitting...        		 - source code - -
        - -
        - - - - - - - - - -
        - - - - - -
        Variables[hide private]
        -
        -   - - __id__ = '$Id: utilsequentialrefine.py 2899 2009-03-16 19:10:0... -
        - - - - - - -
        - - - - - -
        Function Details[hide private]
        -
        - -
        - -
        - - -
        -

        loadSeqRefineController(savefilename) -

        -         		source code  -
        - - 
        -Load a pickle file to recreate a SeqRefineController object
-
-Argument:
-- savefilename  :   str
-
-Return          :   SeqRefineController instance
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getSolutionSeqXML(xmlfilename, - searchparname, - atomname=None) -

        -         		source code  -
        - - 
        -Get the solution from an XML file saved from sequential fitting
-
-Argument:
-- xmlfilename   :   str, xml file name
-- searchparname :   str, parameter name
-- atomname      :   str, atom name
-
-Return          :   list
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        parseStructureSeqXML(xmlfilename) -

        -         		source code  -
        - - 
        -Parse XML file saved from sequential fitting
-
-Argument:
-- xmlfilename   :   str, xml file name
-
-Return          :   dictionary
-                    key:    value of environement parameter
-                    value:  structure
-
-
        -
        -
        -
        -
        -
        - - - - - - -
        - - - - - -
        Variables Details[hide private]
        -
        - -
        - -
        -

        __id__

        - -
        -
        -
        -
        Value:
        - 
        -'$Id: utilsequentialrefine.py 2899 2009-03-16 19:10:09Z wdzhou $'
-
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        Source Code for Module srrietveld.utilsequentialrefine

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2008 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Wenduo Zhou 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14   
- 15  """ 
- 16  Helping methods for sequential fitting or fit a sequence of data by structure 
- 17  independently 
- 18  """ 
- 19   
- 20  __id__ = "$Id: utilsequentialrefine.py 2899 2009-03-16 19:10:09Z wdzhou $" 
- 21   
-
         22 -def loadSeqRefineController(savefilename): 
-
         23      """ Load a pickle file to recreate a SeqRefineController object 
- 24   
- 25      Argument: 
- 26      - savefilename  :   str 
- 27   
- 28      Return          :   SeqRefineController instance 
- 29      """ 
- 30      import pickle 
- 31   
- 32      # 1. Check File and Object and Import 
- 33      try: 
- 34          ifile = open(savefilename) 
- 35          msobj = pickle.load(ifile) 
- 36          ifile.close() 
- 37      except PicklingError, err: 
- 38          errmsg = "PickleError on File %-10s"% (picklefname) 
- 39          raise PickleError(errmsg) 
- 40      except IOError, err: 
- 41          errmsg = "Error Reading File %-10s"% (picklefname) 
- 42          raise IOError(err) 
- 43   
- 44      if not isinstance(msobj, SeqRefineController): 
- 45          errmsg = "Import Class Incorrect, Should be SeqRefineController, But Imported Is %-20s"% \ 
- 46              (msobj.__class__.__name__) 
- 47          raise FitConfigurationError 
- 48   
- 49      # 2. return 
- 50      return msobj  
-
         51   
- 52   
-
         53 -def getSolutionSeqXML(xmlfilename, searchparname, atomname = None): 
-
         54      """ Get the solution from an XML file saved from sequential fitting 
- 55   
- 56      Argument: 
- 57      - xmlfilename   :   str, xml file name 
- 58      - searchparname :   str, parameter name 
- 59      - atomname      :   str, atom name 
- 60   
- 61      Return          :   list 
- 62      """ 
- 63      import diffpy.srrietveld.xmlinterface as XI 
- 64      import diffpy.srrietveld.auxiliary as AX 
- 65   
- 66      # 1. Import XML 
- 67      xmlobj  = XI.importXML(xmlfilename) 
- 68      xmldict = XI.xmlToDict(xmlobj) 
- 69   
- 70      # 2. Interpret information dictionary 
- 71      infodictlist = xmldict["SEQFIT"][0]["REFINE"] 
- 72      searchresult = []  
- 73      for infodict in infodictlist: 
- 74          matchlist = AX.searchdict(infodict, searchparname) 
- 75          searchresult.append( (infodict["Value"], matchlist) ) 
- 76   
- 77      # 3. Process search result to solution list 
- 78      solutionlist = [] 
- 79      for parval, matchlist in searchresult: 
- 80          for matchtuple in matchlist: 
- 81              tempdict = matchtuple[0] 
- 82              parname  = matchtuple[1] 
- 83              tempterms= tempdict[parname].split("+-") 
- 84              tempval  = float(tempterms[0]) 
- 85              if len(tempterms) == 1: 
- 86                  tempsigma = None 
- 87              else: 
- 88                  tempsigma = float(tempterms[1]) 
- 89              # END-IF-ELSE 
- 90   
- 91              # 3.2 Special treatment for atom 
- 92              if tempdict.has_key("Element"): 
- 93                  if atomname is not None: 
- 94                      # some specific atom 
- 95                      if tempdict["Element"].lower() == atomname.lower(): 
- 96                          solutionlist.append( [parval, tempval, tempsigma, parname, tempdict["Tag"]] ) 
- 97                  else: 
- 98                      # all atom 
- 99                      solutionlist.append( [parval, tempval, tempsigma, parname, tempdict["Tag"]] ) 
-100              else: 
-101                  solutionlist.append( [parval, tempval, tempsigma, parname] ) 
-102              # END-IF-ELSE 
-103          # LOOP-OVER 
-104      # LOOP-OVER 
-105   
-106      # 4. Sort Information 
-107      solutiondict = {} 
-108      for sol in solutionlist: 
-109          parval = sol[0] 
-110          solval = sol[1] 
-111          solsig = sol[2] 
-112          parnam = sol[3] 
-113          if not solutiondict.has_key(parval): 
-114              solutiondict[parval] = {} 
-115          if len(sol) == 5: 
-116              # Atom case 
-117              atomtag = sol[4] 
-118              name = (parnam, atomtag) 
-119          else: 
-120              name = parnam 
-121          solutiondict[parval][name] = (solval, solsig) 
-122      # LOOP-OVER  
-123   
-124      return solutiondict 
-
        125   
-126   
-
        127 -def parseStructureSeqXML(xmlfilename): 
-
        128      """ Parse XML file saved from sequential fitting 
-129   
-130      Argument: 
-131      - xmlfilename   :   str, xml file name 
-132   
-133      Return          :   dictionary 
-134                          key:    value of environement parameter 
-135                          value:  structure 
-136      """ 
-137      import diffpy.srrietveld.xmlinterface as XI 
-138      import diffpy.srrietveld.auxiliary as AX 
-139      import diffpy.srrietveld.midscript as MS 
-140   
-141      # 0. Init 
-142      envstructuredict = {} 
-143   
-144      # 1. Import XML 
-145      xmlobj  = XI.importXML(xmlfilename) 
-146      xmldict = XI.xmlToDict(xmlobj) 
-147      rootdict = xmldict["SEQFIT"][0] 
-148   
-149      # 2. Parse each refine 
-150      refinelist = rootdict["REFINE"] 
-151      for singlefit in refinelist: 
-152          # key = 'RefineInfo', 'SavedFile', 'Value', 'Structure' 
-153          dictstructure = singlefit["Structure"] 
-154          tempstructure = [] 
-155          for phasedict in dictstructure: 
-156              # key = 'a', 'c', 'b', 'Name', 'ATOM', 'beta', 'SpaceGroup', 'alpha', 'Type', 'gamma' 
-157       
-158              # a) generate a Lattice 
-159              a = float(phasedict["a"].split("+-")[0]) 
-160              b = float(phasedict["b"].split("+-")[0]) 
-161              c = float(phasedict["c"].split("+-")[0]) 
-162              alpha = float(phasedict["alpha"].split("+-")[0]) 
-163              beta  = float(phasedict["beta"].split("+-")[0]) 
-164              gamma = float(phasedict["gamma"].split("+-")[0]) 
-165              lattice = MS.genLattice(a, b, c, alpha, beta, gamma) 
-166               
-167              # b) generate the phase 
-168              spacegroup = str(phasedict["SpaceGroup"]) 
-169              phasename  = str(phasedict["Name"]) 
-170              phase = MS.initCrystalPhase(lattice, spacegroup, phasename) 
-171              tempstructure.append(phase) 
-172   
-173              # c) atom 
-174              for atomdict in phasedict["ATOM"]: 
-175                  # 'occ', 'Element', 'Biso', 'Tag', 'y', 'x', 'z' 
-176                  elem = str( atomdict["Element"] ) 
-177                  tag  = str( atomdict["Tag"] ) 
-178                  x = float( atomdict["x"].split("+-")[0] ) 
-179                  y = float( atomdict["y"].split("+-")[0] ) 
-180                  z = float( atomdict["z"].split("+-")[0] ) 
-181                  occ = float( atomdict["occ"].split("+-")[0] ) 
-182                  # specify Uiso/Biso, Biso is the internal standard 
-183                  bisostring = str( atomdict["Biso"].split("+-")[0] ) 
-184                  if bisostring != "": 
-185                      biso = float(bisostring) 
-186                  else: 
-187                      uiso = float(atomnode.getAttribute("Uiso")) 
-188                      biso = 8*math.pi*math.pi*uiso 
-189                  # END-IF-ELSE 
-190   
-191                  # b. add atom 
-192                  MS.addAtom(phase, atomtype=elem, fractcoordinate=(x, y, z),  
-193                          occ=occ, biso=biso, atomtag=tag) 
-194              # LOOP-OVER: Atom 
-195          # LOOP-OVER for phasedict in structure 
-196   
-197          # 3. Add to return dictionary 
-198          envparval = float(singlefit["Value"]) 
-199          envstructuredict[envparval] = tempstructure 
-200   
-201      # LOOP OVER -- for atomnode in phasenode.childNodes: 
-202   
-203      return envstructuredict 
-
        204   
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        Module utilunits

        source code

        -Convert the unit between 2-theta/time-of-flight and d-spacing

        - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Functions[hide private]
        -
        -   - - - - - - -
        convertTOFtoD(dtt1, - dtt2, - zero, - tof)
        - Convert TOF to d, as...        		 - source code - -
        - -
        -   - - - - - - -
        convertDtoTOF(dtt1, - dtt2, - zero, - d)
        - Convert d to TOF as...        		 - source code - -
        - -
        -   - - - - - - -
        convert2THETAtoD(wavelength, - zero, - twotheta)
        - Convert 2theta data to d-spacing data...        		 - source code - -
        - -
        -   - - - - - - -
        convertDto2THETA(wavelength, - zero, - d)
        - Convert d-spacing data to 2theta unit...        		 - source code - -
        - -
        - - - - - - - - - - - - - - - -
        - - - - - -
        Variables[hide private]
        -
        -   - - __id__ = '$Id: utilunits.py 2798 2009-03-03 19:49:19Z wdzhou $' -
        -   - - CONST_DEGREEARC = 0.0174532925199 -
        -   - - CONST_ARCDEGREE = 57.2957795131 -
        - - - - - - -
        - - - - - -
        Function Details[hide private]
        -
        - -
        - -
        - - -
        -

        convertTOFtoD(dtt1, - dtt2, - zero, - tof) -

        -         		source code  -
        - - 
        -
-Convert TOF to d, as
-   TOF = Zero + Dtt1 d + Dtt2 d2
--> Dtt2 d^2 + Dtt1 d + (Zero-TOF) = 0
-
-Argument:
-- dtt1  :   float
-- dtt2  :   float
-- zero  :   float
-- tof   :   float
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        convertDtoTOF(dtt1, - dtt2, - zero, - d) -

        -         		source code  -
        - - 
        -
-Convert d to TOF as
-TOF = Zero+Dtt1 d + Dtt2 d^2
-
-Argument:
-- dtt1  :   float
-- dtt2  :   float
-- zero  :   float
-- tof   :   float
-
-Return  :   float (tof)
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        convert2THETAtoD(wavelength, - zero, - twotheta) -

        -         		source code  -
        - - 
        -
-Convert 2theta data to d-spacing data
-d = lambda/2sin(theta)
-
-Argument:
-- wavelength    :   float
-- twotheta      :   float
-
-Return          :   float
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        convertDto2THETA(wavelength, - zero, - d) -

        -         		source code  -
        - - 
        -
-Convert d-spacing data to 2theta unit
-2theta = 2*arcsin(lambda/2d)
-
-Argument:
-- wavelength    :   float
-- d             :   float
-
-Return          :   float
-
-
        -
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        -

        Source Code for Module srrietveld.utilunits

        -
        -  1  ############################################################################## 
-  2  # 
-  3  # diffpy.srrietveld by DANSE Diffraction group 
-  4  #                   Simon J. L. Billinge 
-  5  #                   (c) 2008 Trustees of the Columbia University 
-  6  #                   in the City of New York.  All rights reserved. 
-  7  # 
-  8  # File coded by:    Wenduo Zhou 
-  9  # 
- 10  # See AUTHORS.txt for a list of people who contributed. 
- 11  # See LICENSE.txt for license information. 
- 12  # 
- 13  ############################################################################## 
- 14  """ 
- 15  Convert the unit between 2-theta/time-of-flight and d-spacing 
- 16  """ 
- 17  __id__ = "$Id: utilunits.py 2798 2009-03-03 19:49:19Z wdzhou $" 
- 18   
- 19  import math 
- 20   
- 21  CONST_DEGREEARC = math.pi/180.0 
- 22  CONST_ARCDEGREE = 180.0/math.pi 
- 23   
-
         24 -def convertTOFtoD(dtt1, dtt2, zero, tof): 
-
         25      """ 
- 26      Convert TOF to d, as 
- 27         TOF = Zero + Dtt1 d + Dtt2 d2 
- 28      -> Dtt2 d^2 + Dtt1 d + (Zero-TOF) = 0 
- 29   
- 30      Argument: 
- 31      - dtt1  :   float 
- 32      - dtt2  :   float 
- 33      - zero  :   float 
- 34      - tof   :   float 
- 35      """ 
- 36      a = dtt2 
- 37      b = dtt1 
- 38      c = zero-tof 
- 39   
- 40      p1 = b*b-4*a*c 
- 41      if  p1 < 0: 
- 42          raise NotImplementedError("b^2-4ac < 0") 
- 43   
- 44      solution1 = 1/(2*a) * (-b + math.sqrt(p1))  
- 45      solution2 = 1/(2*a) * (-b - math.sqrt(p1))  
- 46   
- 47      if solution1 > 0 and solution2 > 2 and False: 
- 48          print "Input = %-15s  solution1 = %-15s  solution2 = %-15s"% \ 
- 49              (tof, solution1, solution2) 
- 50   
- 51      if solution1 > solution2: 
- 52          if solution2 > 0: 
- 53              rsol = solution2 
- 54          else: 
- 55              rsol = solution1 
- 56      else: 
- 57          if solution1 > 0: 
- 58              rsol = solution1 
- 59          else:    
- 60              rsol = solution2 
- 61   
- 62      return rsol 
-
         63   
- 64   
-
         65 -def convertDtoTOF(dtt1, dtt2, zero, d): 
-
         66      """ 
- 67      Convert d to TOF as 
- 68      TOF = Zero+Dtt1 d + Dtt2 d^2 
- 69   
- 70      Argument: 
- 71      - dtt1  :   float 
- 72      - dtt2  :   float 
- 73      - zero  :   float 
- 74      - tof   :   float 
- 75   
- 76      Return  :   float (tof) 
- 77      """ 
- 78      tof = zero + dtt1*d + dtt2*d*2 
- 79   
- 80      return tof 
-
         81   
- 82   
-
         83 -def convert2THETAtoD(wavelength, zero, twotheta): 
-
         84      """ 
- 85      Convert 2theta data to d-spacing data 
- 86      d = lambda/2sin(theta) 
- 87   
- 88      Argument: 
- 89      - wavelength    :   float 
- 90      - twotheta      :   float 
- 91   
- 92      Return          :   float 
- 93      """ 
- 94      d = 0.5 * ( 1.0 / math.sin( (twotheta-zero) * 0.50 * CONST_DEGREEARC ) ) * wavelength 
- 95   
- 96      return d 
-
         97   
- 98   
-
         99 -def convertDto2THETA(wavelength, zero, d): 
-
        100      """ 
-101      Convert d-spacing data to 2theta unit 
-102      2theta = 2*arcsin(lambda/2d) 
-103   
-104      Argument: 
-105      - wavelength    :   float 
-106      - d             :   float 
-107   
-108      Return          :   float 
-109      """ 
-110      twotheta = 2.0*math.asin(wavelength*0.5/d)*CONST_ARCDEGREE + zero 
-111   
-112      return twotheta 
-
        113   
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        Module viewer3d

        source code

        -This module contains the method to do 3D viewer to a Phase - instance.

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Functions[hide private]
        -
        -   - - - - - - -
        set3DViewer(viewer)
        - Set the 3d structure viewer.        		 - source code - -
        - -
        -   - - - - - - -
        plotPhase(pha)
        - Plot a phase object with the selected backend.        		 - source code - -
        - -
        -   - - - - - - -
        GetSpaceGroup(spcgrpfp)
        - get a diffpy.Struture.SpaceGroup from the short-name/symbol of a - space group        		 - source code - -
        - -
        -   - - - - - - -
        viewer3D(phase, - flag='VMD')
        - 3D viwer of a phase        		 - source code - -
        - -
        -   - - - - - - -
        startVMD()
        - starting the VMDcontrol        		 - source code - -
        - -
        -   - - - - - - -
        startPyMol()
        - starting the PyMolControl()        		 - source code - -
        - -
        -   - - - - - - -
        checkExternalPackage(appname)
        - check whether the external package exists in $PATH or not...        		 - source code - -
        - -
        - - - - - - - - - - - - - - - -
        - - - - - -
        Variables[hide private]
        -
        -   - - __id__ = '$Id: viewer3d.py 2792 2009-03-02 15:56:43Z wdzhou $' -
        -   - - _viewer = 'vmd' -
        -   - - _viewers = ['pymol', 'vmd'] -
        - - - - - - -
        - - - - - -
        Function Details[hide private]
        -
        - -
        - -
        - - -
        -

        set3DViewer(viewer) -

        -         		source code  -
        - -

        Set the 3d structure viewer.

        - viewer -- "pymol" or "vmd" -
        -
        -
        -
        - -
        - -
        - - -
        -

        plotPhase(pha) -

        -         		source code  -
        - -

        Plot a phase object with the selected backend.

        - FIXME - Get this working in another thread or process. -
        -
        -
        -
        - -
        - -
        - - -
        -

        GetSpaceGroup(spcgrpfp) -

        -         		source code  -
        - -

        get a diffpy.Struture.SpaceGroup from the short-name/symbol of a space - group

        -

        Arguments: spcgrpfp -- string, space group name/symbol

        - return -- diffpy.Structure.SpaceGroup instanc3 -
        -
        -
        -
        - -
        - -
        - - -
        -

        viewer3D(phase, - flag='VMD') -

        -         		source code  -
        - -

        3D viwer of a phase

        -

        Argument: phase -- diffpy.rietveldapi.Phase instance flag -- - string, flag for using vmd or pymol

        - return -- None -
        -
        -
        -
        - -
        - -
        - - -
        -

        startVMD() -

        -         		source code  -
        - -

        starting the VMDcontrol

        - return -- VMDControl instance -
        -
        -
        -
        - -
        - -
        - - -
        -

        startPyMol() -

        -         		source code  -
        - -

        starting the PyMolControl()

        - return -- PyMolControl instance -
        -
        -
        -
        - -
        - -
        - - -
        -

        checkExternalPackage(appname) -

        -         		source code  -
        - - 
        -
-check whether the external package exists in $PATH or not
-
-appname --  string, external package name
-            for example: fp2k, pymol, vmd_LINUX
-
-return  --  True/False
-
-
        -
        -
        -
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        Source Code for Module srrietveld.viewer3d

        -
        -  1  #!/usr/bin/env python 
-  2  ############################################################################## 
-  3  # 
-  4  # diffpy.srrietveld by DANSE Diffraction group 
-  5  #                   Simon J. L. Billinge 
-  6  #                   (c) 2008 Trustees of the Columbia University 
-  7  #                   in the City of New York.  All rights reserved. 
-  8  # 
-  9  # File coded by:    Wenduo Zhou 
- 10  # 
- 11  # See AUTHORS.txt for a list of people who contributed. 
- 12  # See LICENSE.txt for license information. 
- 13  # 
- 14  ############################################################################## 
- 15  """ 
- 16  This module contains the method to do 3D viewer to a Phase instance. 
- 17  """ 
- 18  # FIXME - Allow user to set path to visualizer 
- 19   
- 20  __id__ = "$Id: viewer3d.py 2792 2009-03-02 15:56:43Z wdzhou $" 
- 21   
- 22  import diffpy.Structure 
- 23  from   diffpy.refinementapi.exceptiontools import verifyType 
- 24  from viserrors import VisualizationError 
- 25   
- 26  _viewer = "vmd" 
- 27  _viewers = ["pymol", "vmd"] 
- 28   
-
         29 -def set3DViewer(viewer): 
-
         30      """Set the 3d structure viewer. 
- 31   
- 32      viewer  --  "pymol" or "vmd" 
- 33      """ 
- 34      if viewer not in _viewers: 
- 35          msg = "3D viewer '%s' invalid. Viewer must be one of %s" %(viewer, 
- 36                  _viewers) 
- 37          raise VisualizationError(msg) 
- 38      global _viewer 
- 39      _viewer = viewer 
- 40      return 
-
         41   
-
         42 -def plotPhase(pha): 
-
         43      """Plot a phase object with the selected backend. 
- 44       
- 45      FIXME - Get this working in another thread or process. 
- 46      """ 
- 47      viewer3D(pha, _viewer) 
- 48      return 
-
         49   
-
         50 -def GetSpaceGroup(spcgrpfp): 
-
         51      """ 
- 52      get a diffpy.Struture.SpaceGroup from the short-name/symbol of  
- 53      a space group 
- 54   
- 55      Arguments: 
- 56      spcgrpfp    --  string, space group name/symbol 
- 57   
- 58      return      --  diffpy.Structure.SpaceGroup instanc3 
- 59      """ 
- 60      import diffpy.Structure.SpaceGroups       as     DiffSpaceGroup 
- 61   
- 62      spacegroupdp  = DiffSpaceGroup.GetSpaceGroup(spcgrpfp) 
- 63   
- 64      if spcgrpfp != "P1": 
- 65          if spacegroupdp.number == 1: 
- 66              # cannot find right one, return P1.number = 1 
- 67              # then insert '-' before the number 
- 68              newspcgrp = "" 
- 69              for i in xrange(len(spcgrpfp)): 
- 70                  if spcgrpfp[i] >= '0' and spcgrpfp[i] <= '9': 
- 71                      newspcgrp += "-" 
- 72                  newspcgrp += spcgrpfp[i] 
- 73              print "new:  %-15s    old:  %-15s"%(newspcgrp, spcgrpfp) 
- 74   
- 75              spacegroupdp = DiffSpaceGroup.GetSpaceGroup(newspcgrp) 
- 76   
- 77              # check 
- 78              if spacegroupdp.number == 1: 
- 79                  errmsg  = "viewer3d.GetSpaceGroup():  Input Space Group %-15s and Its Variation %-15s"%\ 
- 80                            (spcgrpfp, newspcgrp) 
- 81                  errmsg += "Not Accepted by diffpy.Structure" 
- 82                  raise VisualizationError(errmsg) 
- 83   
- 84      return spacegroupdp 
-
         85   
- 86   
-
         87 -def viewer3D(phase, flag="VMD"): 
-
         88      """ 
- 89      3D viwer of a phase 
- 90   
- 91      Argument: 
- 92      phase   --  diffpy.rietveldapi.Phase instance 
- 93      flag    --  string, flag for using vmd or pymol 
- 94   
- 95      return  --  None 
- 96      """ 
- 97      import numpy 
- 98      import copy 
- 99      from   diffpy.rietveldapi.phases                 import Phase 
-100      import diffpy.Structure.SpaceGroups       as     DiffSpaceGroup 
-101      import diffpy.Structure.atom              as     DiffpyAtom 
-102      import diffpy.Structure.lattice           as     DiffpyLattice 
-103      from   diffpy.Structure.SymmetryUtilities import ExpandAsymmetricUnit 
-104      import diffpy.Structure                   as     DiffpyStructure 
-105   
-106      verifyType(phase, Phase) 
-107      verifyType(flag,  str) 
-108   
-109      # 1. phase group 
-110      spacegroupstr = phase.getSpaceGroup() 
-111      spcgrp = "" 
-112      for i in xrange(len(spacegroupstr)): 
-113          if spacegroupstr[i] != " ": 
-114              spcgrp += spacegroupstr[i] 
-115      spacegroupdp  = GetSpaceGroup(spcgrp) 
-116   
-117      # 2. atom 
-118      coreatomdplist = [] 
-119      corepositionlist = [] 
-120      for i in xrange(phase.getNumAtoms()): 
-121          atomrt  = phase.getAtom(i) 
-122          element = atomrt.getElement() 
-123          xyzrt   = atomrt.getFractionalCoordinates() 
-124          xyz     = numpy.array([xyzrt[0], xyzrt[1], xyzrt[2]]) 
-125          name    = atomrt.getTag() 
-126          occ     = atomrt.getOccupancy() 
-127          atomdp  = DiffpyAtom.Atom(element, xyz, name, occ) 
-128          corepositionlist.append(xyz) 
-129          coreatomdplist.append(atomdp) 
-130   
-131      # 3. expanded 
-132      if spacegroupdp.number == 227: 
-133          expandedunit = ExpandAsymmetricUnit(spacegroupdp, corepositionlist, sgoffset=[0.125, 0.125, 0.125]) 
-134      else: 
-135          expandedunit = ExpandAsymmetricUnit(spacegroupdp, corepositionlist) 
-136      expandedpos  = expandedunit.expandedpos 
-137      atomlist = [] 
-138      for i in xrange(len(coreatomdplist)): 
-139          positionlist = expandedpos[i] 
-140          coreatom     = coreatomdplist[i] 
-141          for position in positionlist: 
-142              atom = copy.copy(coreatom) 
-143              atom.xyz = position 
-144              atomlist.append(atom) 
-145   
-146      #print type(expandedpos) 
-147      #print type(expandedpos[0]) 
-148      #print len(expandedpos[0]) 
-149   
-150      # 3. Lattice 
-151      latticert = phase.getLattice() 
-152      a = latticert.geta() 
-153      b = latticert.getb() 
-154      c = latticert.getc() 
-155      alpha = latticert.getalpha() 
-156      beta  = latticert.getbeta() 
-157      gamma = latticert.getgamma() 
-158      latticedp = DiffpyLattice.Lattice(a, b, c, alpha, beta, gamma) 
-159   
-160      # 4. Structure 
-161      structuredp = DiffpyStructure.Structure(atomlist, latticedp) 
-162   
-163      print structuredp  
-164   
-165      # start 3d viewer control 
-166      if flag[0].lower() == "v": 
-167          control3d = startVMD() 
-168      elif flag[0].lower() == "p": 
-169          control3d = startPyMol() 
-170      else: 
-171          errmsg = "3D viewer '%s' invalid. Viewer must be one of %s" %(flag, 
-172                  _viewers) 
-173          raise VisualizationError(errmsg) 
-174   
-175      if control3d is not None: 
-176          control3d.start() 
-177          plt = control3d.plot(structuredp) 
-178          raw_input('press any key') 
-179          control3d.stop() 
-180   
-181      return 
-
        182   
-183   
-
        184 -def startVMD(): 
-
        185      """ 
-186      starting the VMDcontrol 
-187   
-188      return  --  VMDControl instance 
-189      """ 
-190      if not checkExternalPackage("vmd_LINUX"): 
-191          print "vmd is not available in current system" 
-192          return  
-193   
-194      from StructureViewer.vmdcontrol import VMDControl 
-195   
-196      vmd = VMDControl('vmd_LINUX') 
-197   
-198      return vmd 
-
        199   
-200   
-
        201 -def startPyMol(): 
-
        202      """ 
-203      starting the PyMolControl() 
-204   
-205      return  --  PyMolControl instance 
-206      """ 
-207      if not checkExternalPackage("pymol"): 
-208          print "pymol is not available in current system" 
-209          return  
-210   
-211      try: 
-212          from StructureViewer.pymolcontrol import PymolControl 
-213          pymol = PymolControl() 
-214          return pymol 
-215      except Exception, err: 
-216          errmsg  = "view3d cannot start PyMolControl due to \n" 
-217          errmsg += str(err) 
-218          raise VisualizationError(errmsg) 
-219   
-220      return 
-
        221   
-222   
-
        223 -def checkExternalPackage(appname): 
-
        224      """ 
-225      check whether the external package exists in $PATH or not 
-226   
-227      appname --  string, external package name 
-228                  for example: fp2k, pymol, vmd_LINUX 
-229   
-230      return  --  True/False 
-231      """ 
-232      import os 
-233      raise NotImplementedError("Need to close all popen returned file threads") 
-234   
-235      cmd = "which "+appname 
-236      rlist = os.popen3(cmd)[1].readlines() 
-237   
-238      if len(rlist) == 0: 
-239          return False 
-240      else: 
-241          return True 
-242   
-243      return 
-
        244   
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        Module viserrors

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        -This module contains exceptions related to visualization.

        - - - - - - - - - - -
        - - - - - -
        Classes[hide private]
        -
        -   - - VisualizationError
        - Base class for all visualization errors. -
        - - - - - - - - - -
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        Variables[hide private]
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        Source Code for Module srrietveld.viserrors

        -
        - 1  #!/usr/bin/env python 
- 2  ############################################################################## 
- 3  # 
- 4  # diffpy.srrietveld by DANSE Diffraction group 
- 5  #                   Simon J. L. Billinge 
- 6  #                   (c) 2008 Trustees of the Columbia University 
- 7  #                   in the City of New York.  All rights reserved. 
- 8  # 
- 9  # File coded by:    Wenduo Zhou 
-10  # 
-11  # See AUTHORS.txt for a list of people who contributed. 
-12  # See LICENSE.txt for license information. 
-13  # 
-14  ############################################################################## 
-15  """This module contains exceptions related to visualization.""" 
-16   
-17  __id__ = "$Id: viserrors.py 2792 2009-03-02 15:56:43Z wdzhou $" 
-18   
-
        19 -class VisualizationError(Exception): 
-
        20      """Base class for all visualization errors.""" 
-21   
-
        22 -    def __init__(self, info): 
-
        23          """Instantiate the error. 
-24   
-25          Arguments 
-26          info    --  Description of the error (string). 
-27   
-28          Returns None 
-29          """ 
-30          Exception.__init__(self) 
-31          self.info = info 
-32          return 
-
        33   
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        Class VisualizationError

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        -
        -              object --+        
-                       |        
-exceptions.BaseException --+    
-                           |    
-        exceptions.Exception --+
-                               |
-                              VisualizationError
-
        - -
        -Base class for all visualization errors.

        - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - info)
        - Instantiate the error.        		 - source code - -
        - -
        -

        Inherited from exceptions.Exception: - __new__ -

        -

        Inherited from exceptions.BaseException: - __delattr__, - __getattribute__, - __getitem__, - __getslice__, - __reduce__, - __repr__, - __setattr__, - __setstate__, - __str__ -

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        -

        __init__(self, - info) -
        (Constructor) -

        -         		source code  -
        - -

        Instantiate the error.

        -

        Arguments info -- Description of the error (string).

        - Returns None -
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        Module xmlconvertor

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        -

        xmlconvertor.py is to convert input file to xml format

        -

        Convertor will include a. cifToxml b. struToxml

        - Created on 2009.03.06

        - - - - - - - - - - -
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        - read cif file and write xml -
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        -
        - 1  #!/usr/bin/env python
 
- 2  ################################################################################
 
- 3  #
 
- 4  #  by DANSE Diffraction group
 
- 5  #               Simon J. L. Billinge
 
- 6  #           (c) 2009 trustees of the Columbia University in the City of New York
 
- 7  # All rights reserved.
 
- 8  #
 
- 9  # File coded by:    Peng Tian
 
-10  #
 
-11  # See AUTHORS.txt for a list of people who contributed.
 
-12  # See LICENSE.txt for license information.
 
-13  #
 
-14  ################################################################################
 
-15  """xmlconvertor.py is to convert input file to xml format
 
-16  
 
-17     Convertor will include
 
-18     a. cifToxml
 
-19     b. struToxml
 
-20  
 
-21     Created on  2009.03.06
 
-22  """ 
-23  import diffpy.srrietveld.phasescript as PS 
-24  import diffpy.srrietveld.xmlgenerator as XG 
-25  
 
-
        26 -class cifToxml(XG.XMLGenerator): 
-
        27      """read cif file and write xml""" 
-28  
 
-
        29 -    def __init__(self, filename, nouncertaintyoutput=False): 
-
        30          """initalization"""    
-31          self._filename = filename 
-32          XG.XMLGenerator.__init__(self, nouncertaintyoutput=False) 
-33          return 
-
        34  
 
-
        35 -    def generateXML(self): 
-
        36          """generate XML nodes""" 
-37          phaseinfo = PS.genPhaseCIF(self._filename) 
-38          # init root node
 
-39          self._modelnode = self._rietxml.createElement("MODEL") 
-40          self._rietxml.appendChild(self._modelnode) 
-41          # assume only one phase in one cif file
 
-42          phasenode = self._rietxml.createElement("PHASE") 
-43          self.setNodeFromDict(phasenode, phaseinfo) 
-44          self._modelnode.appendChild(phasenode) 
-45          return 
-
        46  
 
-47  if __name__ == "__main__": 
-48      import sys 
-49      filename = sys.argv[1] 
-50      outfilename = sys.argv[-1].split(".")[0] + ".xml" 
-51      # check whether the file exists
 
-52      try: 
-53          ofile = open(filename, "r") 
-54          ofile.close() 
-55      except IOError, err: 
-56          errmsg = "%-10s Cannot Be Found"% (filename) 
-57          raise IOError(errmsg) 
-58  
 
-59      format = filename.split(".")[-1] 
-60      if format == "cif": 
-61          cifxml = cifToxml(filename) 
-62          cifxml.exportXML(outfilename) 
-63      else: 
-64          raise NotImplementedError 
-65   
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        Class cifToxml

        source code

        -
        -diffpy.srrietveld.xmlgenerator.XMLGenerator --+
-                                              |
-                                             cifToxml
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        - -
        -read cif file and write xml

        - - - - - - - - - - - - - - - - -
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        Instance Methods[hide private]
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        __init__(self, - filename, - nouncertaintyoutput=False)
        - initalization        		 - source code - -
        - -
        -   - - - - - - -
        generateXML(self)
        - generate XML nodes        		 - source code - -
        - -
        -

        Inherited from diffpy.srrietveld.xmlgenerator.XMLGenerator: - exportXML, - setNodeFromDict -

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        Method Details[hide private]
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        __init__(self, - filename, - nouncertaintyoutput=False) -
        (Constructor) -

        -         		source code  -
        - - initalization -
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        Overrides: - diffpy.srrietveld.xmlgenerator.XMLGenerator.__init__ -
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        - - -
        -

        generateXML(self) -

        -         		source code  -
        - - generate XML nodes -
        -
        Overrides: - diffpy.srrietveld.xmlgenerator.XMLGenerator.generateXML -
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        Module xmlgenerator

        source code

        -

        Task: Clean this module! and extending for RAPDF and make good - documentation Status: - XrayInstrumentXMLGenerator(InstrumentXMLGenerator) is cleaned;

        -

        Class List:

        - XMLGenerator -
          -
        • - InstrumentXMLGenerator -
            -
          • - ThermalNeutronTOFXMLGenerator -
            • -
          • - TOFXMLGenerator -
            • -
          • - XrayInstrumentXMLGenerator -
            • -
          -
          • -
        • - MeasurementXMLGenerator -
            -
          • - POWGENMeasurementXMLGenerator -
            • -
          • - XrayInstrumentMeasurementXMLGenerator ~ - RAPDFMeasurementXMLGenerator -
            • -
          -
          • -
        - XMLGenerator Methods List: -
          -
        • - External Methods: -
            -
          • - exportXML xmlfname -
            • -
          -
          • -
        • - Internal Methods: -
            -
          • - generateXML defined by extended - class -
            • -
          • - setNodeFromDict xmlnode, infodict -
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        Classes[hide private]
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        -   - - XMLGenerator
        - Base class to generate an XML file -
        -   - - InstrumentXMLGenerator
        - class to generate an instrument XML file -
        -   - - XrayInstrumentXMLGenerator
        - class to generate an XRD instrument XML file, extending - InstrumentXMLGenerator -
        -   - - TOFXMLGenerator
        - class to generate an Time-of-flight neutron instrument XML - file -
        -   - - ThermalNeutronTOFXMLGenerator
        - class to generate an XRD instrument XML file -
        -   - - ModelXMLGenerator
        - Generate Model XML -
        -   - - MeasurementXMLGenerator
        - Base class to generate measurement XML -
        -   - - POWGENMeasurementXMLGenerator
        - XML generator of measurement for POWGEN only -
        -   - - TOFMeasurementXMLGenerator
        - XML generator of measurement for general TOF -
        -   - - NPDFMeasurementXMLGenerator
        - Measurement XML for NPDF -
        -   - - GEMMeasurementXMLGenerator
        - Measurement XML for GEM -
        -   - - XrayInstrumentMeasurementXMLGenerator
        - XML Measurement generator for Xray instrument -
        -   - - NeutronCWInstrumentMeasurementXMLGenerator
        - Neutron CW Instrument Measurement generator for constant wave - length neutron instrument -
        -   - - RAPDFMeasurementXMLGenerator
        - XML Generator for RAPDF -
        -   - - RefineStrategyXMLGenerator
        - Generate Refine Strategy Based On RefineGuides -
        -   - - ExcludedRegionXMLGenerator
        - Generate XML files for excluded regions -
        -   - - SeqFitRecordXMLGenerator
        - class to generate an instrument XML file -
        - - - - - - - - - -
        - - - - - -
        Variables[hide private]
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        -   - - __id__ = '$Id: xmlgenerator.py 2918 2009-03-18 19:26:39Z wdzho... -
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        __id__

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        -'$Id: xmlgenerator.py 2918 2009-03-18 19:26:39Z wdzhou $'
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator-pysrc.html b/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator-pysrc.html deleted file mode 100644 index f2a8699c..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator-pysrc.html +++ /dev/null @@ -1,2570 +0,0 @@ - - - - - srrietveld.xmlgenerator - - - - - - - - - - - - - - - - - - - - - - -
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        - - Package srrietveld :: - Module xmlgenerator - - - - - - -
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        Source Code for Module srrietveld.xmlgenerator

        -
        -   1  ############################################################################## 
-   2  # 
-   3  # diffpy.srrietveld by DANSE Diffraction group 
-   4  #                   Simon J. L. Billinge 
-   5  #                   (c) 2008 Trustees of the Columbia University 
-   6  #                   in the City of New York.  All rights reserved. 
-   7  # 
-   8  # File coded by:    Wenduo Zhou 
-   9  # 
-  10  # See AUTHORS.txt for a list of people who contributed. 
-  11  # See LICENSE.txt for license information. 
-  12  # 
-  13  ############################################################################## 
-  14   
-  15  """ Task:     Clean this module!  and extending for RAPDF and make good documentation 
-  16  Status:   XrayInstrumentXMLGenerator(InstrumentXMLGenerator) is cleaned; 
-  17   
-  18  Class List: 
-  19   
-  20  XMLGenerator 
-  21    - InstrumentXMLGenerator 
-  22      - ThermalNeutronTOFXMLGenerator  
-  23      - TOFXMLGenerator  
-  24      - XrayInstrumentXMLGenerator 
-  25    - MeasurementXMLGenerator 
-  26      - POWGENMeasurementXMLGenerator 
-  27      - XrayInstrumentMeasurementXMLGenerator 
-  28        ~ RAPDFMeasurementXMLGenerator 
-  29   
-  30  XMLGenerator Methods List: 
-  31    - External Methods: 
-  32      - exportXML           xmlfname 
-  33    - Internal Methods: 
-  34      - generateXML                             defined by extended class 
-  35      - setNodeFromDict     xmlnode, infodict 
-  36  """ 
-  37  __id__ = "$Id: xmlgenerator.py 2918 2009-03-18 19:26:39Z wdzhou $" 
-  38   
-  39  import xml.dom.minidom 
-  40   
-
          41 -class XMLGenerator: 
-
          42      """ 
-  43      Base class to generate an XML file 
-  44      """ 
-
          45 -    def __init__(self, nouncertaintyoutput=False): 
-
          46          """ initalization 
-  47          """ 
-  48          # 1. init XML 
-  49          self._rietxml = xml.dom.minidom.Document() 
-  50          self._nouncertainty = nouncertaintyoutput 
-  51   
-  52          # 2. generate XML 
-  53          self.generateXML() 
-  54   
-  55          return 
-
          56   
-  57   
-
          58 -    def exportXML(self, xmlfname): 
-
          59          """ Export XML nodes to the designated XML file 
-  60   
-  61          Arguments: 
-  62            - xmlfname    :   str, XML file name to output 
-  63   
-  64          Return          :   None 
-  65          """ 
-  66          s = self._rietxml.toprettyxml(indent="    ") 
-  67          ofile = open(xmlfname, "w") 
-  68          ofile.write(s) 
-  69          ofile.close() 
-  70   
-  71          return 
-
          72   
-  73   
-
          74 -    def generateXML(self): 
-
          75          """ generate XML nodes 
-  76   
-  77          Arguments: 
-  78            - instrument  :   Instrument instance 
-  79   
-  80          Return          :   None 
-  81          """ 
-  82          errmsg = "XMLGenerator is Virtual; Need to Implement generateXML of class %-20s"% \ 
-  83              (self.__class__.__name__) 
-  84          raise NotImplementedError(errmsg) 
-
          85   
-  86   
-
          87 -    def setNodeFromDict(self, xmlnode, infodict): 
-
          88          """ Recursive method ... to set up an XML from a dictionary  
-  89   
-  90          Rule: If a value in infodict element is tuple, it means that this is a float+/- uncertainty 
-  91   
-  92          Argument: 
-  93            - xmlnode   :   XML node   
-  94            - infodict  :   dictionary, stanard diffpy.srrietveld definition (see developer's doc) 
-  95   
-  96          Return  :   None 
-  97          """ 
-  98          for attribname in sorted(infodict.keys()): 
-  99              if isinstance(infodict[attribname], dict): 
- 100                  # set child node for dictionary: recursive 
- 101                  subnodename = attribname 
- 102                  subnode = self._rietxml.createElement(subnodename) 
- 103                  subinfodict = infodict[subnodename] 
- 104                  self.setNodeFromDict(subnode, subinfodict) 
- 105                  xmlnode.appendChild(subnode) 
- 106              elif isinstance(infodict[attribname], list): 
- 107                  # set child node from list: recursive 
- 108                  subnodename = attribname 
- 109                  for subinfodict in infodict[attribname]: 
- 110                      subnode = self._rietxml.createElement(subnodename) 
- 111                      self.setNodeFromDict(subnode, subinfodict) 
- 112                      xmlnode.appendChild(subnode) 
- 113              elif isinstance(infodict[attribname], tuple): 
- 114                  # attribute, with uncertainty 
- 115                  value = infodict[attribname][0] 
- 116                  if self._nouncertainty is True: 
- 117                      xmlvalue = str(value) 
- 118                  else: 
- 119                      sigma = infodict[attribname][1] 
- 120                      xmlvalue = str(value)+"+-"+str(sigma) 
- 121                  xmlnode.setAttribute(attribname, xmlvalue) 
- 122              else: 
- 123                  # attribute  
- 124                  xmlvalue = str(infodict[attribname]) 
- 125                  xmlnode.setAttribute(attribname, xmlvalue) 
- 126          # LOOP-OVER: for attribname in infodict.keys() 
- 127   
- 128          return 
-
         129   
- 130   
- 131  # END-CLASS: XMLGenerator 
- 132   
- 133   
-
         134 -class InstrumentXMLGenerator(XMLGenerator): 
-
         135      """ class to generate an instrument XML file 
- 136      """ 
-
         137 -    def __init__(self, myinstrument, nouncertaintyoutput = False): 
-
         138          """ initalization 
- 139   
- 140          Argument 
- 141            - myinstrument        :   Instrument 
- 142            - nouncertaintyoutput :   boolean.  If yes, then will put uncertainty in output 
- 143                                      XML file 
- 144           
- 145          Return                  :   None 
- 146          """ 
- 147          # Set class instrument 
- 148          self._myInstrument = myinstrument 
- 149   
- 150          # Call base class initialization 
- 151          XMLGenerator.__init__(self, nouncertaintyoutput) 
- 152   
- 153          return 
-
         154   
- 155   
-
         156 -    def generateXML(self): 
-
         157          """ generate XML nodes including: 
- 158            1. root node 
- 159   
- 160          Arguments: 
- 161   
- 162          Return          :   None 
- 163          """ 
- 164          instrumentname = self._myInstrument.getName() 
- 165          instrumenttype = self._myInstrument.getType() 
- 166   
- 167          self._instrumentnode = self._rietxml.createElement("INSTRUMENT") 
- 168          self._instrumentnode.setAttribute("Name", instrumentname) 
- 169          self._instrumentnode.setAttribute("Type", instrumenttype) 
- 170   
- 171          self._rietxml.appendChild(self._instrumentnode) 
- 172   
- 173          return 
-
         174   
- 175   
-
         176 -    def genExcludedRegion(self, start, end, bankno=0): 
-
         177          """ generate an excluded region string with 3 attributes 
- 178   
- 179          Arguments: 
- 180            - start   :   float, starting position of excluded region 
- 181            - end     :   float, ending position of excluded region 
- 182            - bankno  :   int, bank number index 
- 183   
- 184          Return      :   XML node 
- 185          """ 
- 186          ex = self._rietxml.createElementNS("", "EXCLUDEDREGION") 
- 187          ex.setAttribute("start", str(start)) 
- 188          ex.setAttribute("end"  , str(end)) 
- 189          ex.setAttribute("Bank" , str(bankno)) 
- 190   
- 191          return ex  
-
         192   
- 193   
-
         194 -    def genDataProperty(self): 
-
         195          """ generate the properties of data  
- 196   
- 197          Return  :   xml element 
- 198          """ 
- 199          # FIXME - Not used now.  Need clear definition of this function 
- 200          errmsg = "This method is not defined well...  Need new definition from use case" 
- 201          raise NotImplementedError(errmsg) 
- 202   
- 203          df = self._rietxml.createElement("PATTERN") 
- 204   
- 205          df.setAttribute("DataFile", datafilename) 
- 206          df.setAttribute("Min", str(thmin)) 
- 207          df.setAttribute("Max", str(thmax)) 
- 208          df.setAttribute("Resolution", str(resolution)) 
- 209   
- 210          return df 
-
         211   
- 212   
-
         213 -class XrayInstrumentXMLGenerator(InstrumentXMLGenerator): 
-
         214      """ class to generate an XRD instrument XML file,  
- 215      extending InstrumentXMLGenerator 
- 216      """ 
- 217      XMLInstrumentMapDict = { 
- 218          "wavelength1"       :  "Lambda",  
- 219          "peakprofiletype"   :  "PeakProfile", 
- 220          "resolution"        :  "Resolution",  
- 221          "scale"             :  "Scale", 
- 222      } 
- 223   
-
         224 -    def __init__(self, myinstrument, nouncertaintyoutput=False): 
-
         225          """ initalization 
- 226          """ 
- 227          import instrument as IST 
- 228          if not isinstance(myinstrument, IST.XrayInstrument): 
- 229              errmsg = "Input Type Error" 
- 230              raise NotImplementedError(errmsg) 
- 231   
- 232          InstrumentXMLGenerator.__init__(self, myinstrument, nouncertaintyoutput) 
- 233   
- 234          return 
-
         235   
- 236   
-
         237 -    def generateXML(self): 
-
         238          """ generate an Xray instrument 
- 239   
- 240          Return  :   None 
- 241          """ 
- 242          InstrumentXMLGenerator.generateXML(self) 
- 243   
- 244          # 2.1 get information dictionary from instrument  
- 245          infodict = self._myInstrument._infodict 
- 246   
- 247          # 2.2 generate bank-node 
- 248          self.setNodeFromDict(self._instrumentnode, infodict) 
- 249   
- 250          # 2.3 Pretty appearance w/o lambda2 
- 251          if not self._myInstrument._infodict["ENERGY"].has_key("Lambda2"): 
- 252              # 1. Genearte value 
- 253              wavelength2 = self._myInstrument._infodict["ENERGY"]["Lambda"] 
- 254              ratio       = 0.0 
- 255              # 2. get node 
- 256              for childnode in self._instrumentnode.childNodes: 
- 257                  if childnode.localName == "ENERGY": 
- 258                      energynode = childnode 
- 259                      break 
- 260              # 3. set up 
- 261              energynode.setAttribute("Lambda2", str(wavelength2)) 
- 262              energynode.setAttribute("Ratio",   str(ratio)) 
- 263          return 
-
         264   
- 265   
-
         266 -    def setNodeFromDict(self, xmlnode, infodict): 
-
         267          """ Setting up an XML from a dictionary; 
- 268          It is a Recursive method 
- 269          Overriding the method in base class 
- 270   
- 271          Argument: 
- 272            - xmlnode   :   XML node   
- 273            - infodict  :   dictionary, stanard diffpy.srrietveld definition (see developer's doc) 
- 274   
- 275          Return  :   None 
- 276          """ 
- 277          for attribname in sorted(infodict.keys()): 
- 278              if isinstance(infodict[attribname], dict): 
- 279                  # set child node for dictionary: recursive 
- 280                  subnodename = attribname 
- 281                  subnode = self._rietxml.createElement(subnodename) 
- 282                  subinfodict = infodict[subnodename] 
- 283                  self.setNodeFromDict(subnode, subinfodict) 
- 284                  xmlnode.appendChild(subnode) 
- 285   
- 286              elif isinstance(infodict[attribname], list): 
- 287                  # set child node from list: recursive 
- 288                  subnodename = attribname 
- 289                  for subinfodict in infodict[attribname]: 
- 290                      subnode = self._rietxml.createElement(subnodename) 
- 291                      self.setNodeFromDict(subnode, subinfodict) 
- 292                      xmlnode.appendChild(subnode) 
- 293   
- 294              else: 
- 295                  # attribute  
- 296                  xmlvalue = str(infodict[attribname]) 
- 297                  if self.XMLInstrumentMapDict.has_key(attribname): 
- 298                      xmlname = self.XMLInstrumentMapDict[attribname] 
- 299                  else: 
- 300                      xmlname = attribname 
- 301                  xmlnode.setAttribute(xmlname, xmlvalue) 
- 302              # END-IF-ELSE 
- 303          # LOOP-OVER: for attribname in infodict.keys() 
- 304   
- 305          return  
-
         306   
- 307  # END-CLASS:  XrayInstrumentXMLGenerator(InstrumentXMLGenerator) 
- 308   
- 309   
-
         310 -class TOFXMLGenerator(InstrumentXMLGenerator): 
-
         311      """ class to generate an Time-of-flight neutron instrument XML file 
- 312      """ 
-
         313 -    def __init__(self, myinstrument, nouncertaintyoutput=False): 
-
         314          """ initalization 
- 315   
- 316          Argument: 
- 317            - myinstrument  :   Instrument instance 
- 318   
- 319          Return          :   None 
- 320          """ 
- 321          import instrument as IST 
- 322   
- 323          if not isinstance(myinstrument, IST.TOFInstrument): 
- 324              errmsg = "Input Type Error" 
- 325              raise NotImplementedError(errmsg) 
- 326   
- 327          InstrumentXMLGenerator.__init__(self, myinstrument, nouncertaintyoutput) 
- 328   
- 329          return 
-
         330   
- 331   
-
         332 -    def generateXML(self): 
-
         333          """ Generate a Thermal-neutron instrument node 
- 334   
- 335          Return  :   None 
- 336          """ 
- 337          # 1. call base class function 
- 338          InstrumentXMLGenerator.generateXML(self) 
- 339   
- 340          # 2. using information dictionary generated by Instrument 
- 341          for bankno in sorted(self._myInstrument.getBankNumbersList()): 
- 342              # 2.1 get information dictionary from instrument  
- 343              bankinfodict = self._myInstrument.getBankInfoDict(bankno) 
- 344   
- 345              # 2.2 generate bank-node 
- 346              banknode = self._rietxml.createElement("BANK") 
- 347              self.setNodeFromDict(banknode, bankinfodict) 
- 348              self._instrumentnode.appendChild(banknode) 
- 349   
- 350          # LOOP-OVER: for bankno in sorted(instrument.getBankNumbersList) 
- 351   
- 352          return 
-
         353   
- 354  # END CLASS:  ThermalNeutronTOFXMLGenerator(InstrumentXMLGenerator): 
- 355   
- 356   
-
         357 -class ThermalNeutronTOFXMLGenerator(InstrumentXMLGenerator): 
-
         358      """ class to generate an XRD instrument XML file 
- 359      """ 
-
         360 -    def __init__(self, myinstrument, nouncertaintyoutput=False): 
-
         361          """ 
- 362          initalization 
- 363   
- 364          Argument: 
- 365            - myinstrument  :   Instrument instance 
- 366   
- 367          Return          :   None 
- 368          """ 
- 369          import instrument as IST 
- 370   
- 371          if not isinstance(myinstrument, IST.ThermalNeutronTOFInstrument): 
- 372              errmsg = "Input Type Error" 
- 373              raise NotImplementedError(errmsg) 
- 374   
- 375          InstrumentXMLGenerator.__init__(self, myinstrument, nouncertaintyoutput) 
- 376   
- 377          return 
-
         378   
- 379   
-
         380 -    def generateXML(self): 
-
         381          """ Generate a Thermal-neutron instrument node 
- 382   
- 383          Return  :   None 
- 384          """ 
- 385          # 1. call base class function 
- 386          InstrumentXMLGenerator.generateXML(self) 
- 387   
- 388          # 2. using information dictionary generated by Instrument 
- 389          for bankno in sorted(self._myInstrument.getBankNumbersList()): 
- 390              # 2.1 get information dictionary from instrument  
- 391              bankinfodict = self._myInstrument.getBankInfoDict(bankno) 
- 392   
- 393              # 2.2 generate bank-node 
- 394              banknode = self._rietxml.createElement("BANK") 
- 395              self.setNodeFromDict(banknode, bankinfodict) 
- 396              self._instrumentnode.appendChild(banknode) 
- 397   
- 398          # LOOP-OVER: for bankno in sorted(instrument.getBankNumbersList) 
- 399   
- 400          return 
-
         401   
- 402  # END CLASS:  ThermalNeutronTOFXMLGenerator(InstrumentXMLGenerator): 
- 403   
- 404   
-
         405 -class ModelXMLGenerator(XMLGenerator): 
-
         406      """ Generate Model XML 
- 407      """ 
-
         408 -    def __init__(self, phaseslist, nouncertaintyoutput=False): 
-
         409          """ 
- 410          initialization 
- 411          """ 
- 412          self._phaseslist = phaseslist 
- 413   
- 414          XMLGenerator.__init__(self, nouncertaintyoutput) 
- 415   
- 416          return 
-
         417   
- 418   
-
         419 -    def generateXML(self): 
-
         420          """ Implement genearte XML 
- 421          """ 
- 422          import diffpy.srrietveld.phasescript as PU 
- 423   
- 424          # 1. init root node 
- 425          self._modelnode = self._rietxml.createElement("MODEL") 
- 426          self._rietxml.appendChild(self._modelnode) 
- 427   
- 428          # 2. for all phase 
- 429          for phase in self._phaseslist: 
- 430              phaseinfodict = PU.genPhaseDict(phase) 
- 431              phasenode     = self._rietxml.createElement("PHASE") 
- 432              self.setNodeFromDict(phasenode, phaseinfodict) 
- 433              self._modelnode.appendChild(phasenode) 
- 434   
- 435          return 
-
         436   
- 437  # END-CLASS 
- 438   
- 439   
-
         440 -class MeasurementXMLGenerator(XMLGenerator): 
-
         441      """ Base class to generate measurement XML 
- 442      """ 
-
         443 -    def __init__(self, datafilename, nouncertaintyoutput=False): 
-
         444          """ Initialization 
- 445          """ 
- 446          self._datafilename = datafilename 
- 447   
- 448          XMLGenerator.__init__(self, nouncertaintyoutput) 
- 449   
- 450          return 
-
         451   
- 452   
-
         453 -    def generateXML(self): 
-
         454          """ Implement genearte XML 
- 455          """ 
- 456          self._measurementnode = self._rietxml.createElement("MEASUREMENT") 
- 457           
- 458          self._rietxml.appendChild(self._measurementnode) 
- 459   
- 460          return 
-
         461   
- 462      
-
         463 -class POWGENMeasurementXMLGenerator(MeasurementXMLGenerator): 
-
         464      """ XML generator of measurement for POWGEN only 
- 465      """ 
-
         466 -    def __init__(self, datafilename, nouncertaintyoutput=False): 
-
         467          """ 
- 468          Initialization 
- 469          """ 
- 470          MeasurementXMLGenerator.__init__(self, datafilename, nouncertaintyoutput) 
- 471   
- 472          return 
-
         473   
- 474   
-
         475 -    def generateXML(self): 
-
         476          """ Implement genearte XML 
- 477          """ 
- 478          import diffpy.srrietveld.io as SIO 
- 479   
- 480          MeasurementXMLGenerator.generateXML(self) 
- 481   
- 482          banknumber = SIO.readPOWGENDataFile(self._datafilename) 
- 483   
- 484          # Set bank,  single bank is different from multiple bank 
- 485          if banknumber == 1: 
- 486              self.setBank(0) 
- 487          else: 
- 488              for bankno in xrange(1, banknumber+1): 
- 489                  self.setBank(bankno) 
- 490   
- 491          return 
-
         492   
- 493   
-
         494 -    def setBank(self, banknumber): 
-
         495          """ set data file to a POWGEN measurement 
- 496   
- 497          Argument: 
- 498            - banknumber    :   int 
- 499   
- 500          Return          :   None 
- 501          """ 
- 502          banknode = self._rietxml.createElement("BANK") 
- 503   
- 504          banknode.setAttribute("BankNumber", str(banknumber)) 
- 505          banknode.setAttribute("DiffractionFileName", self._datafilename) 
- 506   
- 507          self._measurementnode.appendChild(banknode) 
- 508   
- 509          return 
-
         510   
- 511   
-
         512 -class TOFMeasurementXMLGenerator(MeasurementXMLGenerator): 
-
         513      """ XML generator of measurement for general TOF 
- 514      """ 
- 515      # FIXME  Later POWGEN will be merged to this case! 
-
         516 -    def __init__(self, datafilename, excludedregionsdict, refinerangedict=None,  
- 517              nouncertaintyoutput=False): 
-
         518          """ Initialization of TOFMeasurementXMLGenerator 
- 519           
- 520          Argument: 
- 521            - datafilename      : str 
- 522            - excludedregionsdict: dict, key = banid, value = list of 2-tuples 
- 523            - refinerangedict   : dict, key=bankid, value=(begin, end) 
- 524           
- 525          Return             : None 
- 526          """ 
- 527          if not self.__dict__.has_key("_bankIDs"): 
- 528              self._bankIDs = [] 
- 529   
- 530          if not self.__dict__.has_key("_excludedRegions"): 
- 531              self._excludedRegions = {} 
- 532   
- 533          # 1. Set excluded region 
- 534          for bankid in sorted(excludedregionsdict.keys()): 
- 535              self._excludedRegions[bankid] = excludedregionsdict[bankid][:] 
- 536           
- 537          # 2. Refine range if not none! (just pass) 
- 538          self._refinerangedict = {} 
- 539          if refinerangedict is not None: 
- 540              for bankid in refinerangedict.keys(): 
- 541                  self._refinerangedict[bankid] = refinerangedict[bankid] 
- 542   
- 543          # 3. Call base class  
- 544          MeasurementXMLGenerator.__init__(self, datafilename, nouncertaintyoutput) 
- 545   
- 546          # 4. Set type  
- 547          self._measurementnode.setAttribute("Type", "TOF") 
- 548   
- 549          return 
-
         550   
- 551   
-
         552 -    def generateXML(self): 
-
         553          """ Implement genearte XML 
- 554          """ 
- 555          import diffpy.srrietveld.io as SIO 
- 556           
- 557          # 1. Base class 
- 558          MeasurementXMLGenerator.generateXML(self) 
- 559   
- 560          # 2. Import data file 
- 561          self._parseDataFile() 
- 562   
- 563          # 3. Build up XML Hierachial: using bank-ID for discontinued bank IDs 
- 564          self._banknodes = {} 
- 565          for bankid in self._bankIDs: 
- 566              banknode = self._rietxml.createElement("BANK") 
- 567              self._measurementnode.appendChild(banknode) 
- 568              self._banknodes[bankid] = banknode 
- 569   
- 570          # 4. Set bank 
- 571          for bankid in self._bankIDs: 
- 572              self.setBank(bankid) 
- 573           
- 574          return 
-
         575   
- 576   
-
         577 -    def addExcludedRegion(self, bankid, begin, end): 
-
         578          """ Add excluded region to bank in TOF 
- 579   
- 580          Argument: 
- 581            - bankid    :   int 
- 582            - begin     :   float 
- 583            - end       :   float 
- 584   
- 585          Return      :   None 
- 586          """ 
- 587          if not self._excludedRegions.has_key(bankid): 
- 588              self._excludedRegions[bankid] = [] 
- 589               
- 590          self._excludedRegions[bankid].append( (begin, end) ) 
- 591   
- 592          return 
-
         593   
- 594   
-
         595 -    def setBank(self, bankid): 
-
         596          """ Set the experiement information to a TOF bank 
- 597   
- 598          Argument: 
- 599            - bankid        :   int 
- 600   
- 601          Return          :   None 
- 602          """ 
- 603          minval = self._xs[bankid][0] 
- 604          maxval = self._xs[bankid][-1] 
- 605          res    = (maxval-minval)/(len(self._xs[bankid])-1) 
- 606   
- 607          banknode = self._banknodes[bankid] 
- 608   
- 609          banknode.setAttribute("ID", str(bankid)) 
- 610          banknode.setAttribute("DiffractionFileName", self._datafilename) 
- 611          banknode.setAttribute("Min", str(minval)) 
- 612          banknode.setAttribute("Max", str(maxval)) 
- 613          banknode.setAttribute("Resolution", str(res)) 
- 614   
- 615          # 2. Combine Excluded Regions and Refine Range 
- 616          if self._excludedRegions.has_key(bankid): 
- 617              excludedregionslist = sorted(self._excludedRegions[bankid]) 
- 618          else: 
- 619              excludedregionslist = [] 
- 620               
- 621          if self._refinerangedict.has_key(bankid): 
- 622              x_begin, x_end = self._refinerangedict[bankid] 
- 623              if x_begin < minval:  
- 624                  region = (minval-0.1, x_begin) 
- 625                  excludedregionslist.insert(0, region) 
- 626              if x_end > maxval:   
- 627                  region = (x_end, maxval+0.1) 
- 628                  excludedregionslist.append(region)               
- 629   
- 630          # 3. Write out Excluded regions 
- 631          setupnode = self._rietxml.createElement("SETUP") 
- 632          banknode.appendChild(setupnode) 
- 633   
- 634          for region in excludedregionslist: 
- 635              regionnode = self._rietxml.createElement("EXCLUDEDREGION") 
- 636              setupnode.appendChild(regionnode) 
- 637              regionnode.setAttribute("Begin", str(region[0])) 
- 638              regionnode.setAttribute("End",   str(region[1])) 
- 639          # LOOP-OVER 
- 640   
- 641          return 
-
         642   
- 643   
-
         644 -class NPDFMeasurementXMLGenerator(TOFMeasurementXMLGenerator): 
-
         645      """ Measurement XML for NPDF 
- 646      """ 
-
         647 -    def __init__(self, datafilenames, bankidlist, excludedregions, rangedict,  
- 648              nouncertaintyoutput=False): 
-
         649          """ Initialization 
- 650           
- 651          Requirement: 
- 652            1. datafilename and bandid must be on the same position in the list 
- 653   
- 654          Argument: 
- 655            - datafilenames :   dict, key - bank ID, value - file name 
- 656            - bankidlist    :   list, bank ids 
- 657            - excludedregions:  dict, key: bank ID; Value: list of 2-tupel (begin, end) 
- 658            - rangedict     :   dict, key: bank ID: Value: 2-tuple  
- 659   
- 660          Return              :   None 
- 661          """ 
- 662          if not isinstance(datafilenames, dict): 
- 663              raise NotImplementedError("Input datafilenames is not dict") 
- 664   
- 665          self._datafilenames = datafilenames 
- 666          self._bankIDs       = bankidlist 
- 667   
- 668          TOFMeasurementXMLGenerator.__init__(self, datafilenames, excludedregions,  
- 669                  rangedict, nouncertaintyoutput) 
- 670           
- 671          return 
-
         672   
- 673   
-
         674 -    def setBank(self, bankid): 
-
         675          """ Set the experiement information to a TOF-NPDF bank 
- 676   
- 677          Argument: 
- 678            - bankid        :   int 
- 679   
- 680          Return          :   None 
- 681          """ 
- 682          minval = self._xs[bankid][0] 
- 683          maxval = self._xs[bankid][-1] 
- 684          res    = (maxval-minval)/(len(self._xs[bankid])-1) 
- 685   
- 686          banknode = self._banknodes[bankid] 
- 687   
- 688          banknode.setAttribute("ID", str(bankid)) 
- 689          banknode.setAttribute("DiffractionFileName", self._datafilenames[bankid]) 
- 690          banknode.setAttribute("Min", str(minval)) 
- 691          banknode.setAttribute("Max", str(maxval)) 
- 692          banknode.setAttribute("Resolution", str(res)) 
- 693   
- 694          # 2. Combine Excluded Regions and Refine Range 
- 695          if self._excludedRegions.has_key(bankid): 
- 696              excludedregionslist = sorted(self._excludedRegions[bankid]) 
- 697          else: 
- 698              excludedregionslist = [] 
- 699               
- 700          if self._refinerangedict.has_key(bankid): 
- 701              x_begin, x_end = self._refinerangedict[bankid] 
- 702              if x_begin > minval:  
- 703                  region = (minval-0.1, x_begin) 
- 704                  excludedregionslist.insert(0, region) 
- 705              if x_end < maxval:   
- 706                  region = (x_end, maxval+0.1) 
- 707                  excludedregionslist.append(region)               
- 708   
- 709          # 3. Write out Excluded regions 
- 710          setupnode = self._rietxml.createElement("SETUP") 
- 711          banknode.appendChild(setupnode) 
- 712   
- 713          for region in excludedregionslist: 
- 714              regionnode = self._rietxml.createElement("EXCLUDEDREGION") 
- 715              setupnode.appendChild(regionnode) 
- 716              regionnode.setAttribute("Begin", str(region[0])) 
- 717              regionnode.setAttribute("End",   str(region[1])) 
- 718          # LOOP-OVER 
- 719   
- 720          return 
-
         721   
- 722   
-
         723 -    def _parseDataFile(self): 
-
         724          """ Parse NPDF data file (Fullprof XYSigma) file 
- 725   
- 726          Return  :   None 
- 727          """ 
- 728          import diffpy.srrietveld.datafileconverter as DFP 
- 729   
- 730          self._xs = {} 
- 731          self._ys = {} 
- 732          self._ss = {} 
- 733   
- 734          for bankid in self._bankIDs: 
- 735              p = DFP.NPDFDataParser(self._datafilenames[bankid]) 
- 736              self._xs[bankid], self._ys[bankid], self._ss[bankid] = p.getData() 
- 737   
- 738          return 
-
         739   
- 740   
-
         741 -class GEMMeasurementXMLGenerator(TOFMeasurementXMLGenerator): 
-
         742      """ Measurement XML for GEM 
- 743      """ 
-
         744 -    def __init__(self, datafilename, nouncertaintyoutput=False): 
-
         745          """ 
- 746          Initialization 
- 747          """ 
- 748          TOFMeasurementXMLGenerator.__init__(self, datafilename, nouncertaintyoutput) 
- 749   
- 750          return 
-
         751   
- 752   
-
         753 -    def _parseDataFile(self): 
-
         754          """ Parse GEM data file (gss) file 
- 755   
- 756          Return  :   None 
- 757          """ 
- 758          import diffpy.srrietveld.datafileconvert as DFP 
- 759   
- 760          p = DFP.GEMDataParser(self._datafilename) 
- 761          self._xs, self._ys, self._ss = p.getData() 
- 762   
- 763          for bankid in self._xs.keys(): 
- 764              self._bankIDs.append(bankid)  
- 765   
- 766          return 
-
         767   
- 768   
-
         769 -class XrayInstrumentMeasurementXMLGenerator(MeasurementXMLGenerator): 
-
         770      """ XML Measurement generator for Xray instrument 
- 771      """ 
-
         772 -    def __init__(self, datafilename, backgroundpoints, nouncertaintyoutput = False, 
- 773              crystalname = None, wavelength = None): 
-
         774          """ Initialization of Xray Instrument Measurement XML file generator 
- 775   
- 776          if the background points is not give but crystal name is given, 
- 777          the code will generate a background from the wavelength and stored  
- 778          information 
- 779   
- 780          Argument: 
- 781            - datafilename      :   str 
- 782            - backgroundpoints  :   list of floats 
- 783            - crytalname        :   str 
- 784            - wavelength        :   float 
- 785            - nouncertaintyoutput:  boolean, output float with uncertainty or not 
- 786          """ 
- 787          # 1. Set up start value 
- 788          MeasurementXMLGenerator.__init__(self, datafilename, nouncertaintyoutput) 
- 789          self._crystalname = crystalname 
- 790          self._wavelength  = wavelength 
- 791   
- 792          # 2. Import data file 
- 793          self._xs, self._ys, self._ss = self._parseDataFile() 
- 794          self._backgroundpoints = backgroundpoints 
- 795   
- 796          # 3. Build up XML Hierachial 
- 797          self._expnode = self._rietxml.createElement("EXPERIMENT") 
- 798          self._measurementnode.appendChild(self._expnode) 
- 799   
- 800          # 4. Set background and data set information 
- 801          self._measurementnode.setAttribute("Type", "Xray") 
- 802          self.setBackground() 
- 803          self.setInstrumentInformation() 
- 804   
- 805          return 
-
         806   
- 807   
-
         808 -    def setInstrumentInformation(self): 
-
         809          """ Set instrument information from data file including 
- 810           1. resolution 
- 811           2. max value 
- 812           3. min value 
- 813   
- 814          Assuming that the step is of constant value 
- 815   
- 816          Return  :   None 
- 817          """ 
- 818          xs = self._xs 
- 819   
- 820          minval   = xs[0] 
- 821          maxval   = xs[-1] 
- 822          stepsize = (maxval-minval)/(len(xs)-1) 
- 823   
- 824          self._expnode.setAttribute("DiffractionFileName", self._datafilename) 
- 825          self._expnode.setAttribute("Resolution", str(stepsize)) 
- 826          self._expnode.setAttribute("Min", str(minval)) 
- 827          self._expnode.setAttribute("Max", str(maxval)) 
- 828   
- 829          return 
-
         830   
- 831   
-
         832 -    def setBackground(self): 
-
         833          """ Set the XML node for background: 
- 834            1. if needed, read data file and select the backgrounds points automatically 
- 835            2. generate the nodes 
- 836   
- 837          Return  :   None 
- 838          """ 
- 839          # 1. Generate background points 
- 840          if self._backgroundpoints is None and self._crystalname is not None: 
- 841              # a) if needed, read data file and select the backgrounds points automatically 
- 842              errmsg = "Algorithm is not matured.  Need more consideration" 
- 843              raise NotImplementedError, errmsg 
- 844              # 1.  
- 845              xs = self._xs 
- 846              ys = self._ys 
- 847              ss = self._ss 
- 848   
- 849              # 2. Select background 
- 850              import diffpy.srrietveld.utilbackground as SUBG 
- 851              bkgdprocess = SUBG.XrayBackgroundProcess(xs, ys) 
- 852              bkgdlist = bkgdprocess.selectBackgroundPoints(crystname, wavelength) 
- 853   
- 854          elif self._backgroundpoints is not None: 
- 855              # b) Use user input 
- 856              bkgdlist = self._backgroundpoints 
- 857          else: 
- 858              # c) default 
- 859              bkgdlist = [] 
- 860          # END-IF-ELSE 
- 861   
- 862          # 2. generate the nodes 
- 863          bkgdnode = self._rietxml.createElement("BACKGROUND") 
- 864          self._expnode.appendChild(bkgdnode) 
- 865          bkgdnode.setAttribute("Type", "Interpolated") 
- 866          bkgdnode.setAttribute("FORMAT", "Selected") 
- 867          for p in bkgdlist: 
- 868              x = p[0] 
- 869              y = p[1] 
- 870              pnode = self._rietxml.createElement("SELECTED") 
- 871              bkgdnode.appendChild(pnode) 
- 872              pnode.setAttribute("x", str(x)) 
- 873              pnode.setAttribute("y", str(y)) 
- 874          # LOOP-OVER: for p in bkgdlist 
- 875   
- 876          return 
-
         877   
- 878   
-
         879 -    def _parseDataFile(self): 
-
         880          """ Paser data file 
- 881   
- 882          Return  :   3-tuple, lists of float 
- 883          """ 
- 884          # FIXME - Use XYSigma Paser as default.  Should recognize it automatically 
- 885   
- 886          import diffpy.srrietveld.datafileconverter as SDV 
- 887   
- 888          p = SDV.RAPDFDataParser(self._datafilename) 
- 889   
- 890          xs, ys, ss = p.getData() 
- 891   
- 892          return (xs, ys, ss) 
-
         893   
- 894   
- 895   
-
         896 -class NeutronCWInstrumentMeasurementXMLGenerator(MeasurementXMLGenerator): 
-
         897      """ 
- 898      Neutron CW Instrument Measurement generator for constant wave length neutron instrument 
- 899      """ 
-
         900 -    def __init__(self, datafilename, backgroundpoints = None, wavelength = None,  
- 901              nouncertaintyoutput = False): 
-
         902          """ Initialization 
- 903   
- 904          Arguments: 
- 905            - datafilename      :   str 
- 906            - backgroundpoints  :   list of 2-tuple 
- 907            - wavelength        :   float 
- 908            - nouncertaintyoutput:  boolean 
- 909          """ 
- 910          # 1. Set up start value 
- 911          MeasurementXMLGenerator.__init__(self, datafilename, nouncertaintyoutput) 
- 912          self._wavelength  = wavelength 
- 913          self._backgroundpoints = backgroundpoints 
- 914   
- 915          # 2. Import data file 
- 916          self._xs, self._ys, self._ss = self._parseDataFile() 
- 917   
- 918          # 3. Build up XML Hierachial 
- 919          self._expnode = self._rietxml.createElement("EXPERIMENT") 
- 920          self._measurementnode.appendChild(self._expnode) 
- 921   
- 922          # 4. Set background and data set information 
- 923          self._measurementnode.setAttribute("Type", "NeutronCW") 
- 924          if self._backgroundpoints is not None: 
- 925              self.setBackground() 
- 926          self.setInstrumentInformation() 
- 927   
- 928          return 
-
         929   
- 930   
-
         931 -    def setInstrumentInformation(self): 
-
         932          """ Set instrument information from data file including 
- 933            1. resolution 
- 934            2. max value 
- 935            3. min value 
- 936   
- 937          Assuming that the step is of constant value 
- 938   
- 939          Return  :   None 
- 940          """ 
- 941          xs = self._xs 
- 942   
- 943          minval   = xs[0] 
- 944          maxval   = xs[-1] 
- 945          stepsize = (maxval-minval)/(len(xs)-1) 
- 946   
- 947          self._expnode.setAttribute("DiffractionFileName", self._datafilename) 
- 948          self._expnode.setAttribute("Resolution", str(stepsize)) 
- 949          self._expnode.setAttribute("Min", str(minval)) 
- 950          self._expnode.setAttribute("Max", str(maxval)) 
- 951   
- 952          return 
-
         953   
- 954       
-
         955 -    def _parseDataFile(self): 
-
         956          """ Paser data file 
- 957   
- 958          Return  :   3-tuple, lists of float 
- 959          """ 
- 960          import diffpy.srrietveld.datafileconverter as SDV 
- 961   
- 962          p = SDV.RAPDFDataParser(self._datafilename) 
- 963   
- 964          xs, ys, ss = p.getData() 
- 965   
- 966          return (xs, ys, ss)  
-
         967   
- 968   
-
         969 -    def setBackground(self, crystname = "", wavelength = None): 
-
         970          """ Set the background.   
- 971          The procedure is: 
- 972            1. read data file and select the backgrounds points automatically,  
- 973               if necessary 
- 974            2. generate the nodes 
- 975   
- 976          Return  :   None 
- 977          """ 
- 978          # 1. if needed, read data file and select the backgrounds points automatically 
- 979          if self._backgroundpoints is None: 
- 980              # 1.  
- 981              xs = self._xs 
- 982              ys = self._ys 
- 983              ss = self._ss 
- 984   
- 985              # 2. Select background 
- 986              import diffpy.srrietveld.utilbackground as SUBG 
- 987              bkgdprocess = SUBG.XrayBackgroundProcess(xs, ys) 
- 988              bkgdlist = bkgdprocess.selectBackgroundPoints(crystname, wavelength) 
- 989   
- 990          else: 
- 991              bkgdlist = self._backgroundpoints 
- 992   
- 993          # 2. generate the nodes 
- 994          bkgdnode = self._rietxml.createElement("BACKGROUND") 
- 995          self._expnode.appendChild(bkgdnode) 
- 996          bkgdnode.setAttribute("Type", "Interpolated") 
- 997          bkgdnode.setAttribute("FORMAT", "Selected") 
- 998          for p in bkgdlist: 
- 999              x = p[0] 
-1000              y = p[1] 
-1001              pnode = self._rietxml.createElement("SELECTED") 
-1002              bkgdnode.appendChild(pnode) 
-1003              pnode.setAttribute("x", str(x)) 
-1004              pnode.setAttribute("y", str(y)) 
-1005          # LOOP-OVER: for p in bkgdlist 
-1006   
-1007          return 
-
        1008   
-1009   
-
        1010 -class RAPDFMeasurementXMLGenerator(XrayInstrumentMeasurementXMLGenerator): 
-
        1011      """ 
-1012      XML Generator for RAPDF 
-1013      """ 
-
        1014 -    def _parseDataFile(self): 
-
        1015          """ Paser data file 
-1016   
-1017          Return  :   3-tuple, lists of float 
-1018          """ 
-1019          import diffpy.srrietveld.datafileconverter as SDV 
-1020   
-1021          p = SDV.RAPDFDataParser(self._datafilename) 
-1022   
-1023          xs, ys, ss = p.getData() 
-1024   
-1025          return (xs, ys, ss) 
-
        1026   
-1027  # END-CLASS-DEF class RAPDFMeasurementXMLGenerator(XrayInstrumentMeasurementXMLGenerator) 
-1028   
-1029   
-
        1030 -class RefineStrategyXMLGenerator(XMLGenerator): 
-
        1031      """ Generate Refine Strategy Based On RefineGuides 
-1032      """ 
-
        1033 -    def __init__(self, refinestrategy, nouncertaintyoutput=False): 
-
        1034          """ 
-1035          Initialization 
-1036          """ 
-1037          self._refinestrategy = refinestrategy 
-1038   
-1039          XMLGenerator.__init__(self, nouncertaintyoutput=False) 
-1040   
-1041          return 
-
        1042   
-1043   
-
        1044 -    def generateXML(self): 
-
        1045          """ generate XML nodes 
-1046   
-1047          Arguments: 
-1048            - instrument    :   Instrument instance 
-1049   
-1050          Return          :   None 
-1051          """ 
-1052          # 1. root node 
-1053          self._rsnode = self._rietxml.createElement("REFINESTRATEGY") 
-1054          self._rietxml.appendChild(self._rsnode) 
-1055   
-1056          # 2. set up child nodes per step 
-1057          numsteps = self._refinestrategy.getNumRefineGuideSteps() 
-1058   
-1059          for step in xrange(1, numsteps+1): 
-1060              # 2.1 get all guides for add or remove  
-1061              newguideslist = self._refinestrategy.getRefineGuidesOfStep(step) 
-1062              rmvguideslist = self._refinestrategy.getRefineGuidesRemovedOfStep(step) 
-1063              refinetype    = self._refinestrategy.getRefineTypeOfStep(step) 
-1064   
-1065              # 2.2. generate STEP node 
-1066              stage = 1 
-1067              stepnode = self._rietxml.createElement("STEP") 
-1068              self._rsnode.appendChild(stepnode) 
-1069              stepnode.setAttribute("Step-Number", str(step)) 
-1070              stepnode.setAttribute("Stage", str(stage)) 
-1071              stepnode.setAttribute("Refine-Type", refinetype) 
-1072   
-1073              # 2.3 generate new guides 
-1074              for rguide in newguideslist: 
-1075                  rguidenode = self._rietxml.createElement("ADDGUIDE") 
-1076                  rguidenode.setAttribute("Guide", rguide[0].__class__.__name__) 
-1077                  rguidenode.setAttribute("Stage", str(rguide[1])) 
-1078                  stepnode.appendChild(rguidenode) 
-1079   
-1080              for rguide in rmvguideslist: 
-1081                  rguidenode = self._rietxml.createElement("REMOVEGUIDE") 
-1082                  rguidenode.setAttribute("Guide", rguide[0].__class__.__name__) 
-1083                  rguidenode.setAttribute("Stage", str(rguide[1])) 
-1084                  stepnode.appendChild(rguidenode) 
-1085   
-1086          # END-LOOP: for step in xrange(1, numsteps+1) 
-1087   
-1088          return 
-
        1089   
-1090  # END CLASS:  RefineStrategyXMLGenerator(XMLGenerator) 
-1091   
-1092   
-
        1093 -class ExcludedRegionXMLGenerator(XMLGenerator): 
-
        1094      """ Generate XML files for excluded regions 
-1095      """ 
-
        1096 -    def __init__(self, mode, nouncertaintyoutput=False): 
-
        1097          """ Initialization 
-1098          """ 
-1099          self._mode            = mode 
-1100          self._excludedregions = [] 
-1101   
-1102          XMLGenerator.__init__(self, nouncertaintyoutput) 
-1103   
-1104          return 
-
        1105   
-1106   
-
        1107 -    def generateXML(self): 
-
        1108          """ generate XML nodes 
-1109   
-1110          Arguments: 
-1111            - instrument    :   Instrument instance 
-1112   
-1113          Return          :   None 
-1114          """ 
-1115          # 1. Root node 
-1116          self._stnode = self._rietxml.createElement("SETUP") 
-1117          self._rietxml.appendChild(self._stnode) 
-1118   
-1119          # 2. Set up excluded regions 
-1120          if self._mode == "t": 
-1121              # template mode 
-1122              excludedregions = [ [0.0, 10000.0, -1] ] 
-1123          else: 
-1124              # export mode 
-1125              excludedregions = self._excludedregions 
-1126   
-1127          for region in excludedregions: 
-1128              regionnode = self._rietxml.createElement("EXCLUDEDREGION") 
-1129              regionnode.setAttribute("Begin", str(region[0])) 
-1130              regionnode.setAttribute("End",   str(region[1])) 
-1131              if len(region) > 2: 
-1132                  bankid = region[2] 
-1133              else: 
-1134                  bankid = -1 
-1135              regionnode.setAttribute("Bank",   str(bankid)) 
-1136              self._stnode.appendChild(regionnode) 
-1137   
-1138          return 
-
        1139   
-1140   
-
        1141 -class SeqFitRecordXMLGenerator(XMLGenerator): 
-
        1142      """ class to generate an instrument XML file 
-1143      """ 
-
        1144 -    def __init__(self, seqinfodict, nouncertaintyoutput=False): 
-
        1145          """ initalization 
-1146          """ 
-1147          self._seqinfodict = seqinfodict 
-1148   
-1149          # Call base class initialization 
-1150          XMLGenerator.__init__(self, nouncertaintyoutput) 
-1151   
-1152          return 
-
        1153   
-1154   
-
        1155 -    def generateXML(self): 
-
        1156          """ generate XML nodes including: 
-1157            1. root node 
-1158   
-1159          Return          :   None 
-1160          """ 
-1161          import time 
-1162   
-1163          # 1. Setup Root 
-1164          self._rootnode = self._rietxml.createElement("SEQFIT") 
-1165          self._rootnode.setAttribute("Time", str(time.ctime())) 
-1166   
-1167          self._rietxml.appendChild(self._rootnode) 
-1168   
-1169          # 2. Set all node 
-1170          for parval in sorted(self._seqinfodict.keys()): 
-1171              fitinfodict = self._seqinfodict[parval] 
-1172              # a. set up the single-fit root node 
-1173              fitinfonode = self._rietxml.createElement("REFINE") 
-1174              self._rootnode.appendChild(fitinfonode) 
-1175              fitinfonode.setAttribute("Value", str(parval)) 
-1176              # b. set detailed info 
-1177              self.setNodeFromDict(fitinfonode, fitinfodict) 
-1178          # END-IF 
-1179   
-1180          return 
-
        1181   
-
        -
        - - - - - - - - - - - - - - - - - -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.ExcludedRegionXMLGenerator-class.html b/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.ExcludedRegionXMLGenerator-class.html deleted file mode 100644 index c0bf3595..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.ExcludedRegionXMLGenerator-class.html +++ /dev/null @@ -1,281 +0,0 @@ - - - - - srrietveld.xmlgenerator.ExcludedRegionXMLGenerator - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module xmlgenerator :: - Class ExcludedRegionXMLGenerator - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class ExcludedRegionXMLGenerator

        source code

        -
        -XMLGenerator --+
-               |
-              ExcludedRegionXMLGenerator
-
        - -
        -Generate XML files for excluded regions

        - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - mode, - nouncertaintyoutput=False)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        generateXML(self)
        - generate XML nodes        		 - source code - -
        - -
            Inherited from XMLGenerator
        -   - - - - - - -
        exportXML(self, - xmlfname)
        - Export XML nodes to the designated XML file        		 - source code - -
        - -
        -   - - - - - - -
        setNodeFromDict(self, - xmlnode, - infodict)
        - Recursive method ...        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - mode, - nouncertaintyoutput=False) -
        (Constructor) -

        -         		source code  -
        - - Initialization -
        -
        Overrides: - XMLGenerator.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        generateXML(self) -

        -         		source code  -
        - -

        generate XML nodes

        - Arguments: -
          -
        • - instrument : Instrument instance -
          • -
        - Return : None -
        -
        Overrides: - XMLGenerator.generateXML -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.GEMMeasurementXMLGenerator-class.html b/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.GEMMeasurementXMLGenerator-class.html deleted file mode 100644 index b51ec338..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.GEMMeasurementXMLGenerator-class.html +++ /dev/null @@ -1,334 +0,0 @@ - - - - - srrietveld.xmlgenerator.GEMMeasurementXMLGenerator - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module xmlgenerator :: - Class GEMMeasurementXMLGenerator - - - - - - -
        [hide private]
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        -
        - -

        Class GEMMeasurementXMLGenerator

        source code

        -
        -       XMLGenerator --+        
-                      |        
-MeasurementXMLGenerator --+    
-                          |    
- TOFMeasurementXMLGenerator --+
-                              |
-                             GEMMeasurementXMLGenerator
-
        - -
        -Measurement XML for GEM

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - datafilename, - nouncertaintyoutput=False)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        _parseDataFile(self)
        - Parse GEM data file (gss) file        		 - source code - -
        - -
            Inherited from TOFMeasurementXMLGenerator
        -   - - - - - - -
        addExcludedRegion(self, - bankid, - begin, - end)
        - Add excluded region to bank in TOF        		 - source code - -
        - -
        -   - - - - - - -
        generateXML(self)
        - Implement genearte XML        		 - source code - -
        - -
        -   - - - - - - -
        setBank(self, - bankid)
        - Set the experiement information to a TOF bank        		 - source code - -
        - -
            Inherited from XMLGenerator
        -   - - - - - - -
        exportXML(self, - xmlfname)
        - Export XML nodes to the designated XML file        		 - source code - -
        - -
        -   - - - - - - -
        setNodeFromDict(self, - xmlnode, - infodict)
        - Recursive method ...        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - datafilename, - nouncertaintyoutput=False) -
        (Constructor) -

        -         		source code  -
        - - Initialization -
        -
        Overrides: - TOFMeasurementXMLGenerator.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        _parseDataFile(self) -

        -         		source code  -
        - -

        Parse GEM data file (gss) file

        - Return : None -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.InstrumentXMLGenerator-class.html b/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.InstrumentXMLGenerator-class.html deleted file mode 100644 index 888c20b3..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.InstrumentXMLGenerator-class.html +++ /dev/null @@ -1,391 +0,0 @@ - - - - - srrietveld.xmlgenerator.InstrumentXMLGenerator - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module xmlgenerator :: - Class InstrumentXMLGenerator - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class InstrumentXMLGenerator

        source code

        -
        -XMLGenerator --+
-               |
-              InstrumentXMLGenerator
-
        - -
        Known Subclasses:
        -
        - TOFXMLGenerator, - ThermalNeutronTOFXMLGenerator, - XrayInstrumentXMLGenerator -
        - -
        -class to generate an instrument XML file

        - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - myinstrument, - nouncertaintyoutput=False)
        - initalization        		 - source code - -
        - -
        -   - - - - - - -
        generateXML(self)
        - generate XML nodes including:        		 - source code - -
        - -
        -   - - - - - - -
        genExcludedRegion(self, - start, - end, - bankno=0)
        - generate an excluded region string with 3 attributes        		 - source code - -
        - -
        -   - - - - - - -
        genDataProperty(self)
        - generate the properties of data        		 - source code - -
        - -
            Inherited from XMLGenerator
        -   - - - - - - -
        exportXML(self, - xmlfname)
        - Export XML nodes to the designated XML file        		 - source code - -
        - -
        -   - - - - - - -
        setNodeFromDict(self, - xmlnode, - infodict)
        - Recursive method ...        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - myinstrument, - nouncertaintyoutput=False) -
        (Constructor) -

        -         		source code  -
        - -

        initalization

        - Argument -
          -
        • - myinstrument : Instrument -
          • -
        • - nouncertaintyoutput : boolean. If yes, then will put - uncertainty in output XML file -
          • -
        - Return : None -
        -
        Overrides: - XMLGenerator.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        generateXML(self) -

        -         		source code  -
        - - generate XML nodes including: -
          -
        1. - root node -
          2. -
        -

        Arguments:

        - Return : None -
        -
        Overrides: - XMLGenerator.generateXML -
        -
        -
        -
        - -
        - -
        - - -
        -

        genExcludedRegion(self, - start, - end, - bankno=0) -

        -         		source code  -
        - -

        generate an excluded region string with 3 attributes

        - Arguments: -
          -
        • - start : float, starting position of excluded region -
          • -
        • - end : float, ending position of excluded region -
          • -
        • - bankno : int, bank number index -
          • -
        - Return : XML node -
        -
        -
        -
        - -
        - -
        - - -
        -

        genDataProperty(self) -

        -         		source code  -
        - -

        generate the properties of data

        - Return : xml element -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.MeasurementXMLGenerator-class.html b/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.MeasurementXMLGenerator-class.html deleted file mode 100644 index 38ec870b..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.MeasurementXMLGenerator-class.html +++ /dev/null @@ -1,282 +0,0 @@ - - - - - srrietveld.xmlgenerator.MeasurementXMLGenerator - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module xmlgenerator :: - Class MeasurementXMLGenerator - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class MeasurementXMLGenerator

        source code

        -
        -XMLGenerator --+
-               |
-              MeasurementXMLGenerator
-
        - -
        Known Subclasses:
        -
        - TOFMeasurementXMLGenerator, - NeutronCWInstrumentMeasurementXMLGenerator, - POWGENMeasurementXMLGenerator, - XrayInstrumentMeasurementXMLGenerator -
        - -
        -Base class to generate measurement XML

        - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - datafilename, - nouncertaintyoutput=False)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        generateXML(self)
        - Implement genearte XML        		 - source code - -
        - -
            Inherited from XMLGenerator
        -   - - - - - - -
        exportXML(self, - xmlfname)
        - Export XML nodes to the designated XML file        		 - source code - -
        - -
        -   - - - - - - -
        setNodeFromDict(self, - xmlnode, - infodict)
        - Recursive method ...        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - datafilename, - nouncertaintyoutput=False) -
        (Constructor) -

        -         		source code  -
        - - Initialization -
        -
        Overrides: - XMLGenerator.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        generateXML(self) -

        -         		source code  -
        - - Implement genearte XML -
        -
        Overrides: - XMLGenerator.generateXML -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.ModelXMLGenerator-class.html b/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.ModelXMLGenerator-class.html deleted file mode 100644 index 5e3636cf..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.ModelXMLGenerator-class.html +++ /dev/null @@ -1,274 +0,0 @@ - - - - - srrietveld.xmlgenerator.ModelXMLGenerator - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module xmlgenerator :: - Class ModelXMLGenerator - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class ModelXMLGenerator

        source code

        -
        -XMLGenerator --+
-               |
-              ModelXMLGenerator
-
        - -
        -Generate Model XML

        - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - phaseslist, - nouncertaintyoutput=False)
        - initialization        		 - source code - -
        - -
        -   - - - - - - -
        generateXML(self)
        - Implement genearte XML        		 - source code - -
        - -
            Inherited from XMLGenerator
        -   - - - - - - -
        exportXML(self, - xmlfname)
        - Export XML nodes to the designated XML file        		 - source code - -
        - -
        -   - - - - - - -
        setNodeFromDict(self, - xmlnode, - infodict)
        - Recursive method ...        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - phaseslist, - nouncertaintyoutput=False) -
        (Constructor) -

        -         		source code  -
        - - initialization -
        -
        Overrides: - XMLGenerator.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        generateXML(self) -

        -         		source code  -
        - - Implement genearte XML -
        -
        Overrides: - XMLGenerator.generateXML -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.NPDFMeasurementXMLGenerator-class.html b/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.NPDFMeasurementXMLGenerator-class.html deleted file mode 100644 index ccc139d8..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.NPDFMeasurementXMLGenerator-class.html +++ /dev/null @@ -1,394 +0,0 @@ - - - - - srrietveld.xmlgenerator.NPDFMeasurementXMLGenerator - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module xmlgenerator :: - Class NPDFMeasurementXMLGenerator - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class NPDFMeasurementXMLGenerator

        source code

        -
        -       XMLGenerator --+        
-                      |        
-MeasurementXMLGenerator --+    
-                          |    
- TOFMeasurementXMLGenerator --+
-                              |
-                             NPDFMeasurementXMLGenerator
-
        - -
        -Measurement XML for NPDF

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - datafilenames, - bankidlist, - excludedregions, - rangedict, - nouncertaintyoutput=False)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        setBank(self, - bankid)
        - Set the experiement information to a TOF-NPDF bank        		 - source code - -
        - -
        -   - - - - - - -
        _parseDataFile(self)
        - Parse NPDF data file (Fullprof XYSigma) file        		 - source code - -
        - -
            Inherited from TOFMeasurementXMLGenerator
        -   - - - - - - -
        addExcludedRegion(self, - bankid, - begin, - end)
        - Add excluded region to bank in TOF        		 - source code - -
        - -
        -   - - - - - - -
        generateXML(self)
        - Implement genearte XML        		 - source code - -
        - -
            Inherited from XMLGenerator
        -   - - - - - - -
        exportXML(self, - xmlfname)
        - Export XML nodes to the designated XML file        		 - source code - -
        - -
        -   - - - - - - -
        setNodeFromDict(self, - xmlnode, - infodict)
        - Recursive method ...        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - datafilenames, - bankidlist, - excludedregions, - rangedict, - nouncertaintyoutput=False) -
        (Constructor) -

        -         		source code  -
        - -

        Initialization

        - Requirement: -
          -
        1. - datafilename and bandid must be on the same position in the - list -
          2. -
        - Argument: -
          -
        • - datafilenames : dict, key - bank ID, value - file name -
          • -
        • - bankidlist : list, bank ids -
          • -
        • - excludedregions: dict, key: bank ID; Value: list of 2-tupel - (begin, end) -
          • -
        • - rangedict : dict, key: bank ID: Value: 2-tuple -
          • -
        - Return : None -
        -
        Overrides: - TOFMeasurementXMLGenerator.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        setBank(self, - bankid) -

        -         		source code  -
        - -

        Set the experiement information to a TOF-NPDF bank

        - Argument: -
          -
        • - bankid : int -
          • -
        - Return : None -
        -
        Overrides: - TOFMeasurementXMLGenerator.setBank -
        -
        -
        -
        - -
        - -
        - - -
        -

        _parseDataFile(self) -

        -         		source code  -
        - -

        Parse NPDF data file (Fullprof XYSigma) file

        - Return : None -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:24 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.NeutronCWInstrumentMeasurementXMLGenerator-class.html b/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.NeutronCWInstrumentMeasurementXMLGenerator-class.html deleted file mode 100644 index 81dea9fd..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.NeutronCWInstrumentMeasurementXMLGenerator-class.html +++ /dev/null @@ -1,413 +0,0 @@ - - - - - srrietveld.xmlgenerator.NeutronCWInstrumentMeasurementXMLGenerator - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module xmlgenerator :: - Class NeutronCWInstrumentMeasurementXMLGenerator - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class NeutronCWInstrumentMeasurementXMLGenerator

        source code

        -
        -       XMLGenerator --+    
-                      |    
-MeasurementXMLGenerator --+
-                          |
-                         NeutronCWInstrumentMeasurementXMLGenerator
-
        - -
        -Neutron CW Instrument Measurement generator for constant wave length - neutron instrument

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - datafilename, - backgroundpoints=None, - wavelength=None, - nouncertaintyoutput=False)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        setInstrumentInformation(self)
        - Set instrument information from data file including        		 - source code - -
        - -
        -   - - - - - - -
        _parseDataFile(self)
        - Paser data file        		 - source code - -
        - -
        -   - - - - - - -
        setBackground(self, - crystname='', - wavelength=None)
        - Set the background.        		 - source code - -
        - -
            Inherited from MeasurementXMLGenerator
        -   - - - - - - -
        generateXML(self)
        - Implement genearte XML        		 - source code - -
        - -
            Inherited from XMLGenerator
        -   - - - - - - -
        exportXML(self, - xmlfname)
        - Export XML nodes to the designated XML file        		 - source code - -
        - -
        -   - - - - - - -
        setNodeFromDict(self, - xmlnode, - infodict)
        - Recursive method ...        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - datafilename, - backgroundpoints=None, - wavelength=None, - nouncertaintyoutput=False) -
        (Constructor) -

        -         		source code  -
        - -

        Initialization

        - Arguments: -
          -
        • - datafilename : str -
          • -
        • - backgroundpoints : list of 2-tuple -
          • -
        • - wavelength : float -
          • -
        • - nouncertaintyoutput: boolean -
          • -
        -
        -
        Overrides: - MeasurementXMLGenerator.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        setInstrumentInformation(self) -

        -         		source code  -
        - - Set instrument information from data file including -
          -
        1. - resolution -
          2. -
        2. - max value -
          3. -
        3. - min value -
          4. -
        -

        Assuming that the step is of constant value

        - Return : None -
        -
        -
        -
        - -
        - -
        - - -
        -

        _parseDataFile(self) -

        -         		source code  -
        - -

        Paser data file

        - Return : 3-tuple, lists of float -
        -
        -
        -
        - -
        - -
        - - -
        -

        setBackground(self, - crystname='', - wavelength=None) -

        -         		source code  -
        - - Set the background. The procedure is: -
          -
        1. - read data file and select the backgrounds points automatically, if - necessary -
          2. -
        2. - generate the nodes -
          3. -
        - Return : None -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:24 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.POWGENMeasurementXMLGenerator-class.html b/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.POWGENMeasurementXMLGenerator-class.html deleted file mode 100644 index 5f0f11e7..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.POWGENMeasurementXMLGenerator-class.html +++ /dev/null @@ -1,321 +0,0 @@ - - - - - srrietveld.xmlgenerator.POWGENMeasurementXMLGenerator - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module xmlgenerator :: - Class POWGENMeasurementXMLGenerator - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class POWGENMeasurementXMLGenerator

        source code

        -
        -       XMLGenerator --+    
-                      |    
-MeasurementXMLGenerator --+
-                          |
-                         POWGENMeasurementXMLGenerator
-
        - -
        -XML generator of measurement for POWGEN only

        - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - datafilename, - nouncertaintyoutput=False)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        generateXML(self)
        - Implement genearte XML        		 - source code - -
        - -
        -   - - - - - - -
        setBank(self, - banknumber)
        - set data file to a POWGEN measurement        		 - source code - -
        - -
            Inherited from XMLGenerator
        -   - - - - - - -
        exportXML(self, - xmlfname)
        - Export XML nodes to the designated XML file        		 - source code - -
        - -
        -   - - - - - - -
        setNodeFromDict(self, - xmlnode, - infodict)
        - Recursive method ...        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - datafilename, - nouncertaintyoutput=False) -
        (Constructor) -

        -         		source code  -
        - - Initialization -
        -
        Overrides: - MeasurementXMLGenerator.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        generateXML(self) -

        -         		source code  -
        - - Implement genearte XML -
        -
        Overrides: - MeasurementXMLGenerator.generateXML -
        -
        -
        -
        - -
        - -
        - - -
        -

        setBank(self, - banknumber) -

        -         		source code  -
        - -

        set data file to a POWGEN measurement

        - Argument: -
          -
        • - banknumber : int -
          • -
        - Return : None -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:24 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.RAPDFMeasurementXMLGenerator-class.html b/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.RAPDFMeasurementXMLGenerator-class.html deleted file mode 100644 index 8ebb0973..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.RAPDFMeasurementXMLGenerator-class.html +++ /dev/null @@ -1,315 +0,0 @@ - - - - - srrietveld.xmlgenerator.RAPDFMeasurementXMLGenerator - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module xmlgenerator :: - Class RAPDFMeasurementXMLGenerator - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class RAPDFMeasurementXMLGenerator

        source code

        -
        -                 XMLGenerator --+        
-                                |        
-          MeasurementXMLGenerator --+    
-                                    |    
-XrayInstrumentMeasurementXMLGenerator --+
-                                        |
-                                       RAPDFMeasurementXMLGenerator
-
        - -
        -XML Generator for RAPDF

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        _parseDataFile(self)
        - Paser data file        		 - source code - -
        - -
            Inherited from XrayInstrumentMeasurementXMLGenerator
        -   - - - - - - -
        __init__(self, - datafilename, - backgroundpoints, - nouncertaintyoutput=False, - crystalname=None, - wavelength=None)
        - Initialization of Xray Instrument Measurement XML file - generator        		 - source code - -
        - -
        -   - - - - - - -
        setBackground(self)
        - Set the XML node for background:        		 - source code - -
        - -
        -   - - - - - - -
        setInstrumentInformation(self)
        - Set instrument information from data file including        		 - source code - -
        - -
            Inherited from MeasurementXMLGenerator
        -   - - - - - - -
        generateXML(self)
        - Implement genearte XML        		 - source code - -
        - -
            Inherited from XMLGenerator
        -   - - - - - - -
        exportXML(self, - xmlfname)
        - Export XML nodes to the designated XML file        		 - source code - -
        - -
        -   - - - - - - -
        setNodeFromDict(self, - xmlnode, - infodict)
        - Recursive method ...        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        _parseDataFile(self) -

        -         		source code  -
        - -

        Paser data file

        - Return : 3-tuple, lists of float -
        -
        Overrides: - XrayInstrumentMeasurementXMLGenerator._parseDataFile -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:24 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.RefineStrategyXMLGenerator-class.html b/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.RefineStrategyXMLGenerator-class.html deleted file mode 100644 index a8cd93d4..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.RefineStrategyXMLGenerator-class.html +++ /dev/null @@ -1,281 +0,0 @@ - - - - - srrietveld.xmlgenerator.RefineStrategyXMLGenerator - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module xmlgenerator :: - Class RefineStrategyXMLGenerator - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class RefineStrategyXMLGenerator

        source code

        -
        -XMLGenerator --+
-               |
-              RefineStrategyXMLGenerator
-
        - -
        -Generate Refine Strategy Based On RefineGuides

        - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - refinestrategy, - nouncertaintyoutput=False)
        - Initialization        		 - source code - -
        - -
        -   - - - - - - -
        generateXML(self)
        - generate XML nodes        		 - source code - -
        - -
            Inherited from XMLGenerator
        -   - - - - - - -
        exportXML(self, - xmlfname)
        - Export XML nodes to the designated XML file        		 - source code - -
        - -
        -   - - - - - - -
        setNodeFromDict(self, - xmlnode, - infodict)
        - Recursive method ...        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - refinestrategy, - nouncertaintyoutput=False) -
        (Constructor) -

        -         		source code  -
        - - Initialization -
        -
        Overrides: - XMLGenerator.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        generateXML(self) -

        -         		source code  -
        - -

        generate XML nodes

        - Arguments: -
          -
        • - instrument : Instrument instance -
          • -
        - Return : None -
        -
        Overrides: - XMLGenerator.generateXML -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:24 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.SeqFitRecordXMLGenerator-class.html b/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.SeqFitRecordXMLGenerator-class.html deleted file mode 100644 index fbd5a60f..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.SeqFitRecordXMLGenerator-class.html +++ /dev/null @@ -1,280 +0,0 @@ - - - - - srrietveld.xmlgenerator.SeqFitRecordXMLGenerator - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module xmlgenerator :: - Class SeqFitRecordXMLGenerator - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class SeqFitRecordXMLGenerator

        source code

        -
        -XMLGenerator --+
-               |
-              SeqFitRecordXMLGenerator
-
        - -
        -class to generate an instrument XML file

        - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - seqinfodict, - nouncertaintyoutput=False)
        - initalization        		 - source code - -
        - -
        -   - - - - - - -
        generateXML(self)
        - generate XML nodes including:        		 - source code - -
        - -
            Inherited from XMLGenerator
        -   - - - - - - -
        exportXML(self, - xmlfname)
        - Export XML nodes to the designated XML file        		 - source code - -
        - -
        -   - - - - - - -
        setNodeFromDict(self, - xmlnode, - infodict)
        - Recursive method ...        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - seqinfodict, - nouncertaintyoutput=False) -
        (Constructor) -

        -         		source code  -
        - - initalization -
        -
        Overrides: - XMLGenerator.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        generateXML(self) -

        -         		source code  -
        - - generate XML nodes including: -
          -
        1. - root node -
          2. -
        - Return : None -
        -
        Overrides: - XMLGenerator.generateXML -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
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        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:24 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.TOFMeasurementXMLGenerator-class.html b/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.TOFMeasurementXMLGenerator-class.html deleted file mode 100644 index c3a683dc..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.TOFMeasurementXMLGenerator-class.html +++ /dev/null @@ -1,400 +0,0 @@ - - - - - srrietveld.xmlgenerator.TOFMeasurementXMLGenerator - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module xmlgenerator :: - Class TOFMeasurementXMLGenerator - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class TOFMeasurementXMLGenerator

        source code

        -
        -       XMLGenerator --+    
-                      |    
-MeasurementXMLGenerator --+
-                          |
-                         TOFMeasurementXMLGenerator
-
        - -
        Known Subclasses:
        -
        - GEMMeasurementXMLGenerator, - NPDFMeasurementXMLGenerator -
        - -
        -XML generator of measurement for general TOF

        - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - datafilename, - excludedregionsdict, - refinerangedict=None, - nouncertaintyoutput=False)
        - Initialization of TOFMeasurementXMLGenerator        		 - source code - -
        - -
        -   - - - - - - -
        generateXML(self)
        - Implement genearte XML        		 - source code - -
        - -
        -   - - - - - - -
        addExcludedRegion(self, - bankid, - begin, - end)
        - Add excluded region to bank in TOF        		 - source code - -
        - -
        -   - - - - - - -
        setBank(self, - bankid)
        - Set the experiement information to a TOF bank        		 - source code - -
        - -
            Inherited from XMLGenerator
        -   - - - - - - -
        exportXML(self, - xmlfname)
        - Export XML nodes to the designated XML file        		 - source code - -
        - -
        -   - - - - - - -
        setNodeFromDict(self, - xmlnode, - infodict)
        - Recursive method ...        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - datafilename, - excludedregionsdict, - refinerangedict=None, - nouncertaintyoutput=False) -
        (Constructor) -

        -         		source code  -
        - -

        Initialization of TOFMeasurementXMLGenerator

        - Argument: -
          -
        • - datafilename : str -
          • -
        • - excludedregionsdict: dict, key = banid, value = list of - 2-tuples -
          • -
        • - refinerangedict : dict, key=bankid, value=(begin, end) -
          • -
        - Return : None -
        -
        Overrides: - MeasurementXMLGenerator.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        generateXML(self) -

        -         		source code  -
        - - Implement genearte XML -
        -
        Overrides: - MeasurementXMLGenerator.generateXML -
        -
        -
        -
        - -
        - -
        - - -
        -

        addExcludedRegion(self, - bankid, - begin, - end) -

        -         		source code  -
        - -

        Add excluded region to bank in TOF

        - Argument: -
          -
        • - bankid : int -
          • -
        • - begin : float -
          • -
        • - end : float -
          • -
        - Return : None -
        -
        -
        -
        - -
        - -
        - - -
        -

        setBank(self, - bankid) -

        -         		source code  -
        - -

        Set the experiement information to a TOF bank

        - Argument: -
          -
        • - bankid : int -
          • -
        - Return : None -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:24 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.TOFXMLGenerator-class.html b/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.TOFXMLGenerator-class.html deleted file mode 100644 index 3f4a6fef..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.TOFXMLGenerator-class.html +++ /dev/null @@ -1,324 +0,0 @@ - - - - - srrietveld.xmlgenerator.TOFXMLGenerator - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module xmlgenerator :: - Class TOFXMLGenerator - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class TOFXMLGenerator

        source code

        -
        -      XMLGenerator --+    
-                     |    
-InstrumentXMLGenerator --+
-                         |
-                        TOFXMLGenerator
-
        - -
        -class to generate an Time-of-flight neutron instrument XML file

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - myinstrument, - nouncertaintyoutput=False)
        - initalization        		 - source code - -
        - -
        -   - - - - - - -
        generateXML(self)
        - Generate a Thermal-neutron instrument node        		 - source code - -
        - -
            Inherited from InstrumentXMLGenerator
        -   - - - - - - -
        genDataProperty(self)
        - generate the properties of data        		 - source code - -
        - -
        -   - - - - - - -
        genExcludedRegion(self, - start, - end, - bankno=0)
        - generate an excluded region string with 3 attributes        		 - source code - -
        - -
            Inherited from XMLGenerator
        -   - - - - - - -
        exportXML(self, - xmlfname)
        - Export XML nodes to the designated XML file        		 - source code - -
        - -
        -   - - - - - - -
        setNodeFromDict(self, - xmlnode, - infodict)
        - Recursive method ...        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - myinstrument, - nouncertaintyoutput=False) -
        (Constructor) -

        -         		source code  -
        - -

        initalization

        - Argument: -
          -
        • - myinstrument : Instrument instance -
          • -
        - Return : None -
        -
        Overrides: - InstrumentXMLGenerator.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        generateXML(self) -

        -         		source code  -
        - -

        Generate a Thermal-neutron instrument node

        - Return : None -
        -
        Overrides: - InstrumentXMLGenerator.generateXML -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:24 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.ThermalNeutronTOFXMLGenerator-class.html b/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.ThermalNeutronTOFXMLGenerator-class.html deleted file mode 100644 index 126240d3..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.ThermalNeutronTOFXMLGenerator-class.html +++ /dev/null @@ -1,324 +0,0 @@ - - - - - srrietveld.xmlgenerator.ThermalNeutronTOFXMLGenerator - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module xmlgenerator :: - Class ThermalNeutronTOFXMLGenerator - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class ThermalNeutronTOFXMLGenerator

        source code

        -
        -      XMLGenerator --+    
-                     |    
-InstrumentXMLGenerator --+
-                         |
-                        ThermalNeutronTOFXMLGenerator
-
        - -
        -class to generate an XRD instrument XML file

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - myinstrument, - nouncertaintyoutput=False)
        - initalization        		 - source code - -
        - -
        -   - - - - - - -
        generateXML(self)
        - Generate a Thermal-neutron instrument node        		 - source code - -
        - -
            Inherited from InstrumentXMLGenerator
        -   - - - - - - -
        genDataProperty(self)
        - generate the properties of data        		 - source code - -
        - -
        -   - - - - - - -
        genExcludedRegion(self, - start, - end, - bankno=0)
        - generate an excluded region string with 3 attributes        		 - source code - -
        - -
            Inherited from XMLGenerator
        -   - - - - - - -
        exportXML(self, - xmlfname)
        - Export XML nodes to the designated XML file        		 - source code - -
        - -
        -   - - - - - - -
        setNodeFromDict(self, - xmlnode, - infodict)
        - Recursive method ...        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - myinstrument, - nouncertaintyoutput=False) -
        (Constructor) -

        -         		source code  -
        - -

        initalization

        - Argument: -
          -
        • - myinstrument : Instrument instance -
          • -
        - Return : None -
        -
        Overrides: - InstrumentXMLGenerator.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        generateXML(self) -

        -         		source code  -
        - -

        Generate a Thermal-neutron instrument node

        - Return : None -
        -
        Overrides: - InstrumentXMLGenerator.generateXML -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.XMLGenerator-class.html b/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.XMLGenerator-class.html deleted file mode 100644 index 2e752ed1..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.XMLGenerator-class.html +++ /dev/null @@ -1,314 +0,0 @@ - - - - - srrietveld.xmlgenerator.XMLGenerator - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module xmlgenerator :: - Class XMLGenerator - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class XMLGenerator

        source code

        -
        Known Subclasses:
        -
        - ExcludedRegionXMLGenerator, - MeasurementXMLGenerator, - InstrumentXMLGenerator, - ModelXMLGenerator, - RefineStrategyXMLGenerator, - SeqFitRecordXMLGenerator -
        - -
        -Base class to generate an XML file

        - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - nouncertaintyoutput=False)
        - initalization        		 - source code - -
        - -
        -   - - - - - - -
        exportXML(self, - xmlfname)
        - Export XML nodes to the designated XML file        		 - source code - -
        - -
        -   - - - - - - -
        generateXML(self)
        - generate XML nodes        		 - source code - -
        - -
        -   - - - - - - -
        setNodeFromDict(self, - xmlnode, - infodict)
        - Recursive method ...        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        exportXML(self, - xmlfname) -

        -         		source code  -
        - -

        Export XML nodes to the designated XML file

        - Arguments: -
          -
        • - xmlfname : str, XML file name to output -
          • -
        - Return : None -
        -
        -
        -
        - -
        - -
        - - -
        -

        generateXML(self) -

        -         		source code  -
        - -

        generate XML nodes

        - Arguments: -
          -
        • - instrument : Instrument instance -
          • -
        - Return : None -
        -
        -
        -
        - -
        - -
        - - -
        -

        setNodeFromDict(self, - xmlnode, - infodict) -

        -         		source code  -
        - -

        Recursive method ... to set up an XML from a dictionary

        -

        Rule: If a value in infodict element is tuple, it means that this is a - float+/- uncertainty

        - Argument: -
          -
        • - xmlnode : XML node -
          • -
        • - infodict : dictionary, stanard diffpy.srrietveld definition - (see developer's doc) -
          • -
        - Return : None -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
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        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:24 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.XrayInstrumentMeasurementXMLGenerator-class.html b/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.XrayInstrumentMeasurementXMLGenerator-class.html deleted file mode 100644 index 460d0f55..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.XrayInstrumentMeasurementXMLGenerator-class.html +++ /dev/null @@ -1,423 +0,0 @@ - - - - - srrietveld.xmlgenerator.XrayInstrumentMeasurementXMLGenerator - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
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        - - Package srrietveld :: - Module xmlgenerator :: - Class XrayInstrumentMeasurementXMLGenerator - - - - - - -
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        [frames] | no frames]
        -
        - -

        Class XrayInstrumentMeasurementXMLGenerator

        source code

        -
        -       XMLGenerator --+    
-                      |    
-MeasurementXMLGenerator --+
-                          |
-                         XrayInstrumentMeasurementXMLGenerator
-
        - -
        Known Subclasses:
        -
        - RAPDFMeasurementXMLGenerator -
        - -
        -XML Measurement generator for Xray instrument

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - datafilename, - backgroundpoints, - nouncertaintyoutput=False, - crystalname=None, - wavelength=None)
        - Initialization of Xray Instrument Measurement XML file - generator        		 - source code - -
        - -
        -   - - - - - - -
        setInstrumentInformation(self)
        - Set instrument information from data file including        		 - source code - -
        - -
        -   - - - - - - -
        setBackground(self)
        - Set the XML node for background:        		 - source code - -
        - -
        -   - - - - - - -
        _parseDataFile(self)
        - Paser data file        		 - source code - -
        - -
            Inherited from MeasurementXMLGenerator
        -   - - - - - - -
        generateXML(self)
        - Implement genearte XML        		 - source code - -
        - -
            Inherited from XMLGenerator
        -   - - - - - - -
        exportXML(self, - xmlfname)
        - Export XML nodes to the designated XML file        		 - source code - -
        - -
        -   - - - - - - -
        setNodeFromDict(self, - xmlnode, - infodict)
        - Recursive method ...        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - datafilename, - backgroundpoints, - nouncertaintyoutput=False, - crystalname=None, - wavelength=None) -
        (Constructor) -

        -         		source code  -
        - -

        Initialization of Xray Instrument Measurement XML file generator

        -

        if the background points is not give but crystal name is given, the - code will generate a background from the wavelength and stored - information

        - Argument: -
          -
        • - datafilename : str -
          • -
        • - backgroundpoints : list of floats -
          • -
        • - crytalname : str -
          • -
        • - wavelength : float -
          • -
        • - nouncertaintyoutput: boolean, output float with uncertainty or - not -
          • -
        -
        -
        Overrides: - MeasurementXMLGenerator.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        setInstrumentInformation(self) -

        -         		source code  -
        - - Set instrument information from data file including -
          -
        1. - resolution -
          2. -
        2. - max value -
          3. -
        3. - min value -
          4. -
        -

        Assuming that the step is of constant value

        - Return : None -
        -
        -
        -
        - -
        - -
        - - -
        -

        setBackground(self) -

        -         		source code  -
        - - Set the XML node for background: -
          -
        1. - if needed, read data file and select the backgrounds points - automatically -
          2. -
        2. - generate the nodes -
          3. -
        - Return : None -
        -
        -
        -
        - -
        - -
        - - -
        -

        _parseDataFile(self) -

        -         		source code  -
        - -

        Paser data file

        - Return : 3-tuple, lists of float -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:24 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.XrayInstrumentXMLGenerator-class.html b/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.XrayInstrumentXMLGenerator-class.html deleted file mode 100644 index 33db23a9..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.xmlgenerator.XrayInstrumentXMLGenerator-class.html +++ /dev/null @@ -1,423 +0,0 @@ - - - - - srrietveld.xmlgenerator.XrayInstrumentXMLGenerator - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
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        - - Package srrietveld :: - Module xmlgenerator :: - Class XrayInstrumentXMLGenerator - - - - - - -
        [hide private]
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        -
        - -

        Class XrayInstrumentXMLGenerator

        source code

        -
        -      XMLGenerator --+    
-                     |    
-InstrumentXMLGenerator --+
-                         |
-                        XrayInstrumentXMLGenerator
-
        - -
        -class to generate an XRD instrument XML file, extending - InstrumentXMLGenerator

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - myinstrument, - nouncertaintyoutput=False)
        - initalization        		 - source code - -
        - -
        -   - - - - - - -
        generateXML(self)
        - generate an Xray instrument        		 - source code - -
        - -
        -   - - - - - - -
        setNodeFromDict(self, - xmlnode, - infodict)
        - Setting up an XML from a dictionary; It is a Recursive method - Overriding the method in base class        		 - source code - -
        - -
            Inherited from InstrumentXMLGenerator
        -   - - - - - - -
        genDataProperty(self)
        - generate the properties of data        		 - source code - -
        - -
        -   - - - - - - -
        genExcludedRegion(self, - start, - end, - bankno=0)
        - generate an excluded region string with 3 attributes        		 - source code - -
        - -
            Inherited from XMLGenerator
        -   - - - - - - -
        exportXML(self, - xmlfname)
        - Export XML nodes to the designated XML file        		 - source code - -
        - -
        - - - - - - - - - -
        - - - - - -
        Class Variables[hide private]
        -
        -   - - XMLInstrumentMapDict = {'peakprofiletype': 'PeakProfile', 'res... -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - myinstrument, - nouncertaintyoutput=False) -
        (Constructor) -

        -         		source code  -
        - - initalization -
        -
        Overrides: - InstrumentXMLGenerator.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        generateXML(self) -

        -         		source code  -
        - -

        generate an Xray instrument

        - Return : None -
        -
        Overrides: - InstrumentXMLGenerator.generateXML -
        -
        -
        -
        - -
        - -
        - - -
        -

        setNodeFromDict(self, - xmlnode, - infodict) -

        -         		source code  -
        - -

        Setting up an XML from a dictionary; It is a Recursive method - Overriding the method in base class

        - Argument: -
          -
        • - xmlnode : XML node -
          • -
        • - infodict : dictionary, stanard diffpy.srrietveld definition - (see developer's doc) -
          • -
        - Return : None -
        -
        Overrides: - XMLGenerator.setNodeFromDict -
        -
        -
        -
        -
        - - - - - - -
        - - - - - -
        Class Variable Details[hide private]
        -
        - -
        - -
        -

        XMLInstrumentMapDict

        - -
        -
        -
        -
        Value:
        - 
        -{'peakprofiletype': 'PeakProfile',
- 'resolution': 'Resolution',
- 'scale': 'Scale',
- 'wavelength1': 'Lambda'}
-
        -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:24 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.xmlinterface-module.html b/static_root/doc/srrietveld/developers/srrietveld.xmlinterface-module.html deleted file mode 100644 index 8e21aacc..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.xmlinterface-module.html +++ /dev/null @@ -1,830 +0,0 @@ - - - - - srrietveld.xmlinterface - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
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        - - Package srrietveld :: - Module xmlinterface - - - - - - -
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        -
        - -

        Module xmlinterface

        source code

        -
        -Interface to interpret XML input
-
- Created On: 2008.07.03  Version 2.0 [2009.01.28]
-
- External XML Utility Methods:
-
--  importXML(filename)
--  getXMLNodeAttributes(xmlnode, attrdict)
--  getAttributeValue(elementnode, key)
--  xmlToString(xmlobj, level, childno)
-
- Class   RietXMLParser
- * Client Methods
- - __init__()
- - parseXMLInstrument()
- - parseXMLMeasurement()
- - parseXMLModel()
- - getInstrument()
- - getModel()
- - getMeasurement()
-
- Class InstrumentParser
-
- Class MeasurmentParser
-
- Class StructureParser
-
- Class RefineStrategyXMLParser
-
-  - __init__(self, refinestrategyxmlfilename)
-  - 
-
- External Method List:
- * getXMLNodeAttributes(xmlnode, attrdict):  attribute -> dictionary
-
-


        - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Classes[hide private]
        -
        -   - - InstrumentXMLParser
        - XML Parser to parse an instrument XML file... -
        -   - - StructureXMLParser
        - XML parser for structure XML file defined in SrRietveld... -
        -   - - MeasurementXMLParser
        - Parsing measurement XML file -
        -   - - RefineStrategyXMLParser
        - Parse a RefineStrategy provided by users. -
        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Functions[hide private]
        -
        -   - - - - - - -
        parseRange(rangenode)
        - Status: being coded        		 - source code - -
        - -
        -   - - - - - - -
        parseExcludedRegion(excludedregionnode)
        - Status: being coded        		 - source code - -
        - -
        -   - - - - - - -
        parseBackground(backgroundnode)
        - Interpret a Background Node        		 - source code - -
        - -
        -   - - - - - - -
        xmlFilter(xmlobj)
        - Filter an xml.dom.mini.dom object...        		 - source code - -
        - -
        -   - - - - - - -
        importXML(filename)
        - Parse an XML file for quick-Rietveld-configuration...        		 - source code - -
        - -
        -   - - - - - - -
        xmlToString(xmlobj, - level, - childno)
        - Export an XML object to string        		 - source code - -
        - -
        -   - - - - - - -
        xmlToDict(xmlnode)
        - Convert an XML object to a dictionary...        		 - source code - -
        - -
        -   - - - - - - -
        getAttributeValue(elementnode, - key)
        - Get the value of an attribute in an element node...        		 - source code - -
        - -
        -   - - - - - - -
        getXMLNodeAttributes(xmlnode, - attrdict)
        - Retrieve the attributes (float) of an XML node and store in a dictionary...        		 - source code - -
        - -
        -   - - - - - - -
        getInstrumentInformation(xmlfilename)
        - Get the instrument name from an XML instrument file...        		 - source code - -
        - -
        -   - - - - - - -
        getStructureInformation(xmlfilename)
        - Get the instrument name from an XML instrument file...        		 - source code - -
        - -
        -   - - - - - - -
        importExcludedRegionFile(xmlfilename)
        - Reading the standard Excluded-Region input file, -and export the excludedregion-list - -Argument: -- xmlfilename : str - -Return : dict.        		 - source code - -
        - -
        - - - - - - - - - -
        - - - - - -
        Variables[hide private]
        -
        -   - - __id__ = '$Id: xmlinterface.py 2921 2009-03-20 15:43:13Z wdzho... -
        - - - - - - -
        - - - - - -
        Function Details[hide private]
        -
        - -
        - -
        - - -
        -

        parseRange(rangenode) -

        -         		source code  -
        - -

        Status: being coded

        -

        Interpret a Range Node to For Min, Max, Step/Resolution

        - Return : 3-float-tuple: thmin, thmax, resolution -
        -
        -
        -
        - -
        - -
        - - -
        -

        parseExcludedRegion(excludedregionnode) -

        -         		source code  -
        - -

        Status: being coded

        -

        Interpret an Excluded Region XML node

        - Return : 3-tuple (float, float, int): start, end, bankno -
        -
        -
        -
        - -
        - -
        - - -
        -

        parseBackground(backgroundnode) -

        -         		source code  -
        - -

        Interpret a Background Node

        -

        Used by both Measurement XML and Instrument XML

        - Return : dictionary: parameters of background, keys including -
          -
        • - Type str -
          • -
        • - Bkpos flaot -
          • -
        • - Format str -
          • -
        • - Select list -
          • -
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        xmlFilter(xmlobj) -

        -         		source code  -
        - - 
        -Filter an xml.dom.mini.dom object
-
-Argument    
-  xmlobj    :   xml.dom.minidom.Document object (Element)
-
-Return      :   xml
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        importXML(filename) -

        -         		source code  -
        - - 
        -Parse an XML file for quick-Rietveld-configuration
-
-Argument:
-  filename  :   string, XML file name
-
-Return      :   an xml.dom.minidom.Document object
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        xmlToString(xmlobj, - level, - childno) -

        -         		source code  -
        - -

        Export an XML object to string

        -

        Argument

        - return : string -
        -
        -
        -
        - -
        - -
        - - -
        -

        xmlToDict(xmlnode) -

        -         		source code  -
        - - 
        -Convert an XML object to a dictionary
-
-Argument:
-  xmlboj    :   xml.dom.minidom.Document object
-
-Return      :   dict
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getAttributeValue(elementnode, - key) -

        -         		source code  -
        - - 
        -Get the value of an attribute in an element node
-
-Argument:
-  elementnode   :   an Dom element node instance
-  key           :   string, key/name of an attribute
-
-Return          :   string, value of instrument
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getXMLNodeAttributes(xmlnode, - attrdict) -

        -         		source code  -
        - - 
        -Retrieve the attributes (float) of an XML node and store in a dictionary
-
-Arguments:
-- xmlnode   :   XML node
-- attribdict:   dictionary 
-
-Return      :   None
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getInstrumentInformation(xmlfilename) -

        -         		source code  -
        - - 
        -Get the instrument name from an XML instrument file
-
-Argument:
-  xmlfilename   :   str
-
-Return          :   dictionary
-                    - str, type of instrument
-                    - str, name of instrument
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        getStructureInformation(xmlfilename) -

        -         		source code  -
        - - 
        -Get the instrument name from an XML instrument file
-
-Argument:
-- xmlfilename   :   str
-
-Return          :   dictionary
-                    - str, type of instrument
-                    - str, name of instrument
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        importExcludedRegionFile(xmlfilename) -

        -         		source code  -
        - - 
        -Reading the standard Excluded-Region input file,
-and export the excludedregion-list
-
-Argument:
-- xmlfilename   :   str
-
-Return          :   dict. key = Bank ID (default = 0).  value = list
-
-
        -
        -
        -
        -
        -
        - - - - - - -
        - - - - - -
        Variables Details[hide private]
        -
        - -
        - -
        -

        __id__

        - -
        -
        -
        -
        Value:
        - 
        -'$Id: xmlinterface.py 2921 2009-03-20 15:43:13Z wdzhou $'
-
        -
        -
        -
        -
        -
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        - - Package srrietveld :: - Module xmlinterface - - - - - - -
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        Source Code for Module srrietveld.xmlinterface

        -
        -   1  #!/usr/bin/python 
-   2  ############################################################################## 
-   3  # 
-   4  # diffpy.srrietveld by DANSE Diffraction group 
-   5  #                   Simon J. L. Billinge 
-   6  #                   (c) 2008 Trustees of the Columbia University 
-   7  #                   in the City of New York.  All rights reserved. 
-   8  # 
-   9  # File coded by:    Wenduo Zhou 
-  10  # 
-  11  # See AUTHORS.txt for a list of people who contributed. 
-  12  # See LICENSE.txt for license information. 
-  13  # 
-  14  ############################################################################## 
-  15   
-  16  """ Interface to interpret XML input 
-  17   
-  18    Created On: 2008.07.03  Version 2.0 [2009.01.28] 
-  19   
-  20    External XML Utility Methods: 
-  21   
-  22   -  importXML(filename) 
-  23   -  getXMLNodeAttributes(xmlnode, attrdict) 
-  24   -  getAttributeValue(elementnode, key) 
-  25   -  xmlToString(xmlobj, level, childno) 
-  26   
-  27    Class   RietXMLParser 
-  28    * Client Methods 
-  29    - __init__() 
-  30    - parseXMLInstrument() 
-  31    - parseXMLMeasurement() 
-  32    - parseXMLModel() 
-  33    - getInstrument() 
-  34    - getModel() 
-  35    - getMeasurement() 
-  36   
-  37    Class InstrumentParser 
-  38   
-  39    Class MeasurmentParser 
-  40   
-  41    Class StructureParser 
-  42   
-  43    Class RefineStrategyXMLParser 
-  44   
-  45     - __init__(self, refinestrategyxmlfilename) 
-  46     -  
-  47   
-  48    External Method List: 
-  49    * getXMLNodeAttributes(xmlnode, attrdict):  attribute -> dictionary 
-  50   
-  51  """ 
-  52  __id__ = "$Id: xmlinterface.py 2921 2009-03-20 15:43:13Z wdzhou $" 
-  53   
-  54  import  xml.dom.minidom 
-  55  from    diffpy.refinementapi.errors            import  FitConfigurationError 
-  56   
-  57   
-
          58 -class InstrumentXMLParser(object): 
-
          59      """ XML Parser to parse an instrument XML file 
-  60   
-  61      Instantiate:  
-  62        InstrumentXMLParser(instrumentfilename) 
-  63      """ 
-
          64 -    def __init__(self, instrumentfilename): 
-
          65          """ Initialization of InstrumentXMLParser 
-  66   
-  67          Argument: 
-  68          - instrumentfilename    :   str, xml input file 
-  69          """ 
-  70          self._instrumentxml = importXML(instrumentfilename)     
-  71   
-  72          self.parseXMLInstrument() 
-  73           
-  74          return       
-
          75   
-  76           
-
          77 -    def getInstrument(self): 
-
          78          """ Get the Instrument of this XML file 
-  79           
-  80          Return  :   Instrument 
-  81          """ 
-  82          return self._instrument 
-
          83   
-  84   
-  85      # Level 1 
-
          86 -    def parseXMLInstrument(self): 
-
          87          """ Parse instrument XML file to instrument node to Instrument 
-  88   
-  89          Return  :   diffpy.srrietveld.Instrument instance 
-  90          """ 
-  91          # 1. Import instrument 
-  92          instrumentnode = None 
-  93          for childnode in self._instrumentxml.childNodes: 
-  94              if childnode.localName == "INSTRUMENT": 
-  95                  instrumentnode = childnode 
-  96   
-  97          # 2. Validate & Further Process 
-  98          if instrumentnode is None: 
-  99              errmsg = "No INSTRUMENT Node" 
- 100              raise FitConfigurationError(errmsg) 
- 101   
- 102          # 3. parse instrument 
- 103          self._instrument = self.parseInstrumentNode(instrumentnode) 
- 104   
- 105          return self._instrument 
-
         106   
- 107   
- 108      # II. Level 2: Instrument and Pattern 
-
         109 -    def parseInstrumentNode(self, instrumentnode): 
-
         110          """ Intepret an instrument and set up the following 
- 111   
- 112          Return  :   2-tuple, Instrument object, list of dictionary as dataset 
- 113          """ 
- 114          import instrument as IS 
- 115   
- 116          # 1. parse and generate instrument 
- 117          iname   = str(getAttributeValue(instrumentnode, "Name")) 
- 118          itype   = str(getAttributeValue(instrumentnode, "Type")) 
- 119          peakprof= str(getAttributeValue(instrumentnode, "PeakProfileType")) 
- 120   
- 121          if itype == "Database": 
- 122              # Instrument Information From Database 
- 123              instrument = IS.getInstrument(iname) 
- 124   
- 125          elif itype == "Xray" or itype == "NeutronCW": 
- 126              # Generate User-defined Instrument of Constant Wavelength 
- 127              peakprofilesetup = False 
- 128   
- 129              # a. Read Child Nodes 
- 130              for childnode in instrumentnode.childNodes: 
- 131                  if childnode.localName == "ENERGY": 
- 132                      # Get ENERGY Node 
- 133                      val1 = getAttributeValue(childnode, "Lambda") 
- 134                      val2 = getAttributeValue(childnode, "Lambda2") 
- 135                      val3 = getAttributeValue(childnode, "Ratio") 
- 136                      val4 = getAttributeValue(childnode, "Resolution") 
- 137                      lambda1 = float(val1) 
- 138                      resolut = float(val4) 
- 139                      try: 
- 140                          lambda2 = float(val2) 
- 141                          ratio   = float(val3) 
- 142                      except TypeError, err: 
- 143                          lambda2 = None 
- 144                          ratio   = 0.0 
- 145                      except ValueError, err: 
- 146                          lambda2 = None 
- 147                          ratio   = 0.0 
- 148   
- 149                  elif childnode.localName == "SETUP": 
- 150                      #  Get SETUP node 
- 151                      patterninfodict = self.parsePattern(childnode) 
- 152   
- 153                  elif childnode.localName == "PEAKPROFILE": 
- 154                      # Set up peak profile 
- 155                      # 1. Individual-check 
- 156                      if peakprofilesetup is True: 
- 157                          raise FitConfigurationError(errmsg) 
- 158                      # 2. import and set flag 
- 159                      peakprofiledict = self.parsePeakProfile(childnode) 
- 160                      peakprofilesetup = True 
- 161   
- 162                  elif childnode.localName == "BACKGROUND": 
- 163                      bkgdinfodict = parseBackground(childnode) 
- 164   
- 165                  else: 
- 166                      # Undefined Node 
- 167                      errmsg = "Unrecognized Node!  Node name = <%-5s>"% (childnode.localName) 
- 168                      print errmsg 
- 169                  # END-IF childnode.localName == "ENERGY" 
- 170              # LOOP-OVER: for childnode in instrumentnode.childNodes: 
- 171            
- 172              # b. Set up 'Instrument' 
- 173              if itype == "Xray": 
- 174                  # Xray 
- 175                  instrument = IS.XrayInstrument(name=iname, wavelength=lambda1, wavelength2=lambda2, 
- 176                      ratio=ratio, resolution=resolut, peakprofiledict=peakprofiledict, backgroundinfodict=bkgdinfodict) 
- 177              elif itype == "NeutronCW": 
- 178                  # Neutron C.W. 
- 179                  instrument = IS.NeutronCWInstrument(name=iname, wavelength=lambda1, wavelength2=lambda2, 
- 180                      ratio=ratio, resolution=resolut, peakprofiledict=peakprofiledict, backgroundinfodict=bkgdinfodict) 
- 181              else: 
- 182                  raise NotImplementedError("Instrument %-10s Is Not Supported" % (itype)) 
- 183              # END-IF itype  
- 184   
- 185              instrument.setZero(patterninfodict["Zero"]) 
- 186   
- 187              # c. Set up Instrument's Optional: peak profile, excluded region  
- 188              instrument.setPeakProfileInfo(parameterdict = peakprofiledict)   
- 189              for region in patterninfodict["ExcludedRegion"]: 
- 190                  instrument.addExcludedRegion(region[0], region[1]) 
- 191   
- 192          elif itype == "TOF": 
- 193              curbkgdtype = getAttributeValue(instrumentnode, "BackgroundType") 
- 194   
- 195              instrument = IS.TOFInstrument(name=iname, backgroundtype=curbkgdtype) 
- 196   
- 197              for childnode in instrumentnode.childNodes: 
- 198                  if childnode.localName == "BANK": 
- 199                      # a) read attribute 
- 200                      bankid  = int(getAttributeValue(childnode, "Bank")) 
- 201   
- 202                      # b) get sub-attributes 
- 203                      for grandchildnode in childnode.childNodes: 
- 204                          if grandchildnode.localName == "GEOMETRY": 
- 205                              # Geometry 
- 206                              dtt1          = float(getAttributeValue(grandchildnode, "Dtt1")        ) 
- 207                              dtt2          = float(getAttributeValue(grandchildnode, "Dtt2")        ) 
- 208                              twothetabank  = float(getAttributeValue(grandchildnode, "TwoThetaBank")) 
- 209                              xcross        = float(getAttributeValue(grandchildnode, "Xcross")      ) 
- 210                              width         = float(getAttributeValue(grandchildnode, "Width")       ) 
- 211                              resolution    = float(getAttributeValue(grandchildnode, "Resolution")       ) 
- 212                              zshift = getAttributeValue(childnode, "zshift") 
- 213                              if zshift is not None: 
- 214                                  zshift = float(zshift) 
- 215   
- 216                          elif grandchildnode.localName == "SETUP": 
- 217                              # Excluded region 
- 218                              setupdict = self.parsePattern(grandchildnode) 
- 219                              excludedregionslist = setupdict["ExcludedRegion"] 
- 220                              myrange = setupdict["Range"] 
- 221   
- 222                          elif grandchildnode.localName == "PEAKPROFILE": 
- 223                              # Peak shape 
- 224                              peakprofiledict = self.parsePeakProfile(grandchildnode) 
- 225   
- 226                          elif grandchildnode.localName == "BACKGROUND": 
- 227                              backgrounddict = parseBackground(grandchildnode) 
- 228                      # LOOP-OVER:  for grandchildnode in childnode.childNodes: 
- 229   
- 230                      if backgrounddict is None: 
- 231                          backgrounddict = {} 
- 232                          backgrounddict["Type"]   = curbkgdtype[0] 
- 233                          backgrounddict["Points"] = [bkpos] 
- 234   
- 235                      rangetuple = (myrange[0], myrange[1], resolution) 
- 236   
- 237                      # c) add bank information 
- 238                      instrument.setBankInfo(bankid=bankid, dtt1=dtt1, dtt2=dtt2, twothetabank=twothetabank, \ 
- 239                          xcross=xcross, width=width, range=rangetuple,   \ 
- 240                          excludedregions=excludedregionslist,        peakprofile=peakprofiledict, \ 
- 241                          backgroundinfo=backgrounddict) 
- 242                      instrument.setZero(zshift=zshift) 
- 243   
- 244                  # END-IF if childnode.localName == "BANK": 
- 245              # LOOP-OVER  for childnode in instrumentnode.childNodes 
- 246              
- 247          elif itype == "ThermalNeutronTOF": 
- 248              curbkgdtype = getAttributeValue(instrumentnode, "BackgroundType") 
- 249   
- 250              instrument = IS.ThermalNeutronTOFInstrument(name=iname, backgroundtype=curbkgdtype) 
- 251   
- 252              for childnode in instrumentnode.childNodes: 
- 253                  if childnode.localName == "BANK": 
- 254                      # a) read attribute 
- 255                      bankno          = int(getAttributeValue(childnode, "Bank")) 
- 256                      dtt1            = float(getAttributeValue(childnode, "Dtt1")        ) 
- 257                      dtt2            = float(getAttributeValue(childnode, "Dtt2")        ) 
- 258                      twothetabank    = float(getAttributeValue(childnode, "TwoThetaBank")) 
- 259                      dtt1t           = float(getAttributeValue(childnode, "Dtt1t")       ) 
- 260                      dtt2t           = float(getAttributeValue(childnode, "Dtt2t")       ) 
- 261                      xcross          = float(getAttributeValue(childnode, "Xcross")      ) 
- 262                      width           = float(getAttributeValue(childnode, "Width")       ) 
- 263   
- 264                      zshift = getAttributeValue(childnode, "zshift") 
- 265                      if zshift is not None: 
- 266                          zshift = float(zshift) 
- 267                      zerot  = getAttributeValue(childnode, "zerot") 
- 268                      if zerot is not None: 
- 269                          zerot = float(zerot) 
- 270   
- 271                      # b) get sub-attributes 
- 272                      excludedregionslist = [] 
- 273                      backgrounddict = None 
- 274                      for grandchildnode in childnode.childNodes: 
- 275                          if grandchildnode.localName == "RANGE": 
- 276                              # Default range 
- 277                              rangetuple = self.parseRange(grandchildnode) 
- 278   
- 279                          elif grandchildnode.localName == "EXCLUDEDREGION": 
- 280                              # Excluded region 
- 281                              exclregiontuple = parseExcludedRegion(grandchildnode) 
- 282                              excludedregionslist.append(exclregiontuple) 
- 283   
- 284                          elif grandchildnode.localName == "PEAKPROFILE": 
- 285                              # Peak shape 
- 286                              peakprofiledict = self.parsePeakProfile(grandchildnode) 
- 287   
- 288                          elif grandchildnode.localName == "BACKGROUND": 
- 289                              bkgdtype, backgrounddict = self.parseBackground(grandchildnode) 
- 290                      # LOOP-OVER:  for grandchildnode in childnode.childNodes: 
- 291   
- 292                      if backgrounddict is None: 
- 293                          if 1:   # Debug 1645, if pass, remove this branch 
- 294                              raise NotImplementedError("1645: Not Tested for Points (bkpos)") 
- 295                       
- 296                          backgrounddict = {} 
- 297                          backgrounddict["Type"]   = curbkgdtype[0] 
- 298                          backgrounddict["Points"] = [bkpos] 
- 299   
- 300                      # c) add bank information 
- 301                      instrument.setBankInfo(bankno, dtt1=dtt1, dtt2=dtt2, dtt1t=dtt1t, dtt2t=dtt2t,\ 
- 302                          twothetabank=twothetabank, xcross=xcross,   width=width,  range=rangetuple, \ 
- 303                          excludedregions=excludedregionslist,        peakprofile=peakprofiledict,  
- 304                          backgroundinfo=backgrounddict) 
- 305                      instrument.setZero(zshift=zshift, zerot=zerot) 
- 306   
- 307                  # END-IF if childnode.localName == "BANK": 
- 308              # LOOP-OVER  for childnode in instrumentnode.childNodes 
- 309   
- 310          else: 
- 311              errmsg = "Instrument Type %-10s has NOT been Implemented!"% (itype) 
- 312              raise NotImplementedError(errmsg) 
- 313                       
- 314          # 3. retrun 
- 315          return instrument 
-
         316   
- 317   
-
         318 -    def parsePattern(self, patnode): 
-
         319          """ interpret a Pattern node 
- 320          including: 
- 321          (1) Pattern file name 
- 322          (2) background file (optional) or background polynomials  
- 323          (3) excluded region (optional) 
- 324   
- 325          Return  :   dictionary dataset 
- 326          """ 
- 327          # 1. init 
- 328          dataset = {} 
- 329   
- 330          # 2. data file, min, max, zero 
- 331          patfilename = str(getAttributeValue(patnode, "DiffractionFileName")) 
- 332          try: 
- 333              thmin = float(patnode.getAttribute("Min")) 
- 334          except ValueError, err: 
- 335              thmin = 0.0 
- 336          try: 
- 337              thmax = float(patnode.getAttribute("Max")) 
- 338          except ValueError, err: 
- 339              thmax = 0.0 
- 340          myrange = (thmin, thmax) 
- 341   
- 342          sz = patnode.getAttribute("Zero") 
- 343          if sz == "": 
- 344              zero = 0.0 
- 345          else: 
- 346              zero = float(sz) 
- 347   
- 348          # 3. background and excluded regions list 
- 349          bkgdnodecount = False 
- 350          backgroundtuple = None 
- 351          excludedregionslist = [] 
- 352          for childnode in patnode.childNodes: 
- 353              if childnode.localName == "BACKGROUND": 
- 354                  # Background 
- 355                  # 1. check for individuality 
- 356                  if bkgdnodecount is True: 
- 357                      errmsg = "More than 1 Background Node Is Given In XML" 
- 358                      raise  FitConfigurationError(msg) 
- 359                  else: 
- 360                      bkgdnodecount = True 
- 361                  # 2. get Background 
- 362                  bkgdtype, backgroundtuple = self.parseBackground(childnode) 
- 363   
- 364              elif childnode.localName == "EXCLUDEDREGION": 
- 365                  # excluded region 
- 366                  start, end, bankno = parseExcludedRegion(childnode) 
- 367                  excludedregionslist.append( (start, end, bankno) ) 
- 368   
- 369              elif childnode.localName == "RANGE": 
- 370                  minval = float(getAttributeValue(childnode, "Min")) 
- 371                  maxval = float(getAttributeValue(childnode, "Max")) 
- 372                  myrange = (minval, maxval) 
- 373   
- 374          # END LOOP -- for childnode in patnode.childNodes 
- 375   
- 376          # 4. build return 
- 377          dataset["DiffractionFileName"]  = patfilename 
- 378          dataset["Range"]                = myrange 
- 379          dataset["BackgroundFileName"]   = backgroundtuple 
- 380          dataset["ExcludedRegion"]       = excludedregionslist 
- 381          dataset["Zero"]                 = zero 
- 382   
- 383          return dataset 
-
         384   
- 385   
- 386      # IV Instrument/Sample Corrections! 
-
         387 -    def parsePeakProfile(self, peakprofilenode): 
-
         388          """ Construct a PeakProfile parameter value dictionary 
- 389   
- 390          Argument: 
- 391          - peakprofilenode   :   XML node 
- 392           
- 393          Return  :   dictionary of parameters 
- 394          """ 
- 395          # 1. Init 
- 396          peakattrdict = {} 
- 397   
- 398          # 2. Peak Profile 
- 399          getXMLNodeAttributes(peakprofilenode, peakattrdict)  
- 400   
- 401          # 3. Child nodes 
- 402          for childnode in peakprofilenode.childNodes: 
- 403              lname = childnode.localName 
- 404              if  lname == "DECAY" or lname == "ABSORPTION": 
- 405                  # FIXME More valid local name will come upon further development 
- 406                  peakattrdict[lname.lower()] = {} 
- 407                  getXMLNodeAttributes(childnode, peakattrdict[lname.lower()]) 
- 408          # LOOP-OVER:  for childnode in peakprofilenode.childNodes: 
- 409                  
- 410          return peakattrdict 
-
         411   
- 412  # END-CLASS InstrumentXMLParser 
- 413   
- 414   
-
         415 -class StructureXMLParser(object): 
-
         416      """ XML parser for structure XML file defined in SrRietveld 
- 417   
- 418      Instantiate: 
- 419        StructureXMLParser(structurefilename) 
- 420      """ 
-
         421 -    def __init__(self, structurefilename): 
-
         422          """ Initialization of StructureXMLParser 
- 423   
- 424          Argument: 
- 425          - structurefilename :   str 
- 426          """ 
- 427          self._modelxml = importXML(structurefilename) 
- 428   
- 429          self.parseXMLModel() 
- 430   
- 431          return 
-
         432   
- 433   
-
         434 -    def getStructure(self): 
-
         435          """ 
- 436          Get the model/list of phases  
- 437   
- 438          Return  :   List of Phases 
- 439          """ 
- 440          return self._curmodel 
-
         441   
- 442   
-
         443 -    def parseXMLModel(self): 
-
         444          """ Parse model XML file to model nodes list 
- 445   
- 446          Return  :   list of diffpy.srrietveld.Phase instances 
- 447          """ 
- 448          # 1. Import model 
- 449          modelnode = None 
- 450          for childnode in self._modelxml.childNodes: 
- 451              if childnode.localName == "MODEL": 
- 452                  modelnode = childnode 
- 453   
- 454          # 2. Modle node => phase nodes list 
- 455          if modelnode is None: 
- 456              errmsg = "No MODEL Node" 
- 457              raise FitConfigurationError(errmsg) 
- 458          else: 
- 459              phasenodeslist = [] 
- 460              for grandchildnode in modelnode.childNodes: 
- 461                  if grandchildnode.localName == "PHASE": 
- 462                      phasenodeslist.append(grandchildnode) 
- 463              if len(phasenodeslist) == 0: 
- 464                  errmsg = "No PHASE Node Defined in MODEL-XML" 
- 465                  raise FitConfigurationError(errmsg)         
- 466                  
- 467          # 3. Parse XML nodes to diffpy.rietveldapi/Middle-level objects 
- 468          self._curmodel = [] 
- 469          for phasenode in phasenodeslist: 
- 470              phase = self.parsePhaseNode(phasenode) 
- 471              self._curmodel.append(phase)  
- 472   
- 473          return self._curmodel 
-
         474   
- 475   
-
         476 -    def parsePhaseNode(self, phasenode): 
-
         477          """ Construct a Phase objects from a MODEL note 
- 478           
- 479          Return  :   list of Phase objects 
- 480          """ 
- 481          import midscript            as MS 
- 482          import math 
- 483   
- 484          # 1. get type  
- 485          phasetype = phasenode.getAttribute("Type") 
- 486   
- 487          if phasetype == "User": 
- 488   
- 489              # 2.1 lattice 
- 490              a = float(phasenode.getAttribute("a")) 
- 491              b = float(phasenode.getAttribute("b")) 
- 492              c = float(phasenode.getAttribute("c")) 
- 493              alpha = float(phasenode.getAttribute("alpha")) 
- 494              beta  = float(phasenode.getAttribute("beta")) 
- 495              gamma = float(phasenode.getAttribute("gamma")) 
- 496              lattice = MS.genLattice(a, b, c, alpha, beta, gamma) 
- 497   
- 498              # 2.2 others 
- 499              spacegroup = str(phasenode.getAttribute("SpaceGroup")) 
- 500              phasename  = str(phasenode.getAttribute("Name")) 
- 501   
- 502              # 2.3 generate 
- 503              phase = MS.initCrystalPhase(lattice, spacegroup, phasename) 
- 504   
- 505              # 2.2 atom 
- 506              for atomnode in phasenode.childNodes: 
- 507                  # a. parse each atom's parameter 
- 508                  elem = str(atomnode.getAttribute("Element")) 
- 509                  tag  = str(atomnode.getAttribute("Tag")) 
- 510                  x = float(atomnode.getAttribute("x")) 
- 511                  y = float(atomnode.getAttribute("y")) 
- 512                  z = float(atomnode.getAttribute("z")) 
- 513                  occ = float(atomnode.getAttribute("occ")) 
- 514                  # specify Uiso/Biso, Biso is the internal standard 
- 515                  bisostring = str(atomnode.getAttribute("Biso")) 
- 516                  if bisostring != "": 
- 517                      biso = float(bisostring) 
- 518                  else: 
- 519                      uiso = float(atomnode.getAttribute("Uiso")) 
- 520                      biso = 8*math.pi*math.pi*uiso 
- 521   
- 522                  # b. add atom 
- 523                  MS.addAtom(phase, atomtype=elem, fractcoordinate=(x, y, z), occ=occ, biso=biso, atomtag=tag) 
- 524   
- 525              # LOOP OVER -- for atomnode in phasenode.childNodes: 
- 526   
- 527          elif phasetype == "CIF": 
- 528              # read from CIF file 
- 529              cifname = getAttributeValue(phasenode, "CIFName") 
- 530              phase = importPhaseFromCIF() 
- 531   
- 532          else: 
- 533              raise FitConfigurationError(errmsg) 
- 534   
- 535          # 2. return 
- 536          return phase         
-
         537   
- 538   
-
         539 -class MeasurementXMLParser(object): 
-
         540      """ 
- 541      Parsing measurement XML file 
- 542      """ 
-
         543 -    def __init__(self, measurementfilenamelist): 
-
         544          """ Initialization 
- 545   
- 546          Assumption:  
- 547          1. one measurement XML file stands for one experiment 
- 548   
- 549          Argument: 
- 550          - measurementfilenamelist   :   list of str,  
- 551                                          measurment XML file name 
- 552   
- 553          Return  :   None 
- 554          """ 
- 555          if not isinstance(measurementfilenamelist, list): 
- 556              errmsg = "Type Error! Not List" 
- 557              raise NotImplementedError, errmsg 
- 558   
- 559          # 1. Init 
- 560          self._expmeasurelist = [] 
- 561          self._measurements = [] 
- 562   
- 563          # 2. Import and parse 
- 564          for measurefname in measurementfilenamelist: 
- 565              tempxml = importXML(measurefname) 
- 566              tempmeasurements = self.parseXMLMeasurement(tempxml) 
- 567              self._expmeasurelist.append( tempmeasurements ) 
- 568          # LOOP-OVER 
- 569   
- 570          return 
-
         571   
- 572       
-
         573 -    def getMeasurements(self): 
-
         574          """ Get the measurements/list of Measurment due to experiement 
- 575   
- 576          Return  :   list of list of Measurement 
- 577          """ 
- 578          return self._expmeasurelist[:] 
-
         579   
- 580   
-
         581 -    def parseXMLMeasurement(self, measurementxml): 
-
         582          """ Parse measurement XML file to measurement nodes list 
- 583   
- 584          Argument: 
- 585          - measurementxml    :   str, XML node 
- 586   
- 587          Return  :   list, diffpy.srrietveld.Measurement 
- 588          """ 
- 589          # 1. Locate MEASUREMENT node 
- 590          measurementnode = None 
- 591          for childnode in measurementxml.childNodes: 
- 592              if childnode.localName == "MEASUREMENT": 
- 593                  measurementnode = childnode 
- 594           
- 595          if measurementnode is None: 
- 596              errmsg = "Mesurement XML File Format Error: " + \ 
- 597                      "MEASUREMENT Node Cannot Be Located" 
- 598              raise FigConfigurationError(errmsg) 
- 599          else: 
- 600              measuretype = str(getAttributeValue(measurementnode, "Type")) 
- 601   
- 602          # 2. Measurement node => Bank nodes list 
- 603          banknodeslist = [] 
- 604          for grandchildnode in measurementnode.childNodes: 
- 605              if grandchildnode.localName == "BANK": 
- 606                  banknodeslist.append(grandchildnode) 
- 607              elif grandchildnode.localName == "EXPERIMENT": 
- 608                  exepnode = grandchildnode 
- 609          # LOOP-OVER: for grandchildnode in measurementnode.childNodes: 
- 610   
- 611          # 3. Bank nodes list => measurement 
- 612          tempmeasurements = [] 
- 613          if measuretype.upper() == "XRAY" or measuretype.upper() == "NEUTRONCW": 
- 614              # Xray 
- 615              measurement = self.parseMeasurementNode(exepnode, measuretype) 
- 616              tempmeasurements.append(measurement) 
- 617   
- 618          else: 
- 619              # TOF Multiple Bank 
- 620              for banknode in banknodeslist: 
- 621                  measurement = self.parseMeasurementNode(banknode, 'TOF') 
- 622                  tempmeasurements.append(measurement) 
- 623          # END-IF-ELSE 
- 624   
- 625          self._measurements.extend( tempmeasurements ) 
- 626             
- 627          return tempmeasurements 
-
         628   
- 629   
-
         630 -    def parseMeasurementNode(self, measurementnode, instrumenttype): 
-
         631          """ Parse and set up and Measurement Object for a single Bank 
- 632   
- 633          Arguments: 
- 634          - measurementnode   :   XML node for a single bank measurement 
- 635          - measurementtype   :   str,  
- 636   
- 637          Return              :   Measurement instance 
- 638          """ 
- 639          import measurements as MSR 
- 640   
- 641          # 1. Get All Attributes of the 'EXPERIMENT' Node 
- 642          measuredict = {} 
- 643          getXMLNodeAttributes(measurementnode, measuredict) 
- 644   
- 645          # 2.    Create a Measurement instance  
- 646          measure = MSR.Measurement() 
- 647   
- 648          # 2.1   Required 
- 649          if measuredict.has_key("ID"): 
- 650              banknumber = measuredict["ID"] 
- 651              measure.setBankNumber(banknumber) 
- 652   
- 653          filename    = measuredict["DiffractionFileName"] 
- 654          measure.setDataFileName(filename) 
- 655   
- 656          thmin = measuredict["Min"] 
- 657          thmax = measuredict["Max"] 
- 658          resol = measuredict["Resolution"] 
- 659          measure.setMeasureRange( (thmin, thmax) ) 
- 660   
- 661          # 2.2   Optional 
- 662          backgroundnode = None 
- 663          setupnode      = None 
- 664          for childnode in measurementnode.childNodes: 
- 665              if childnode.localName == "BACKGROUND": 
- 666                  backgroundnode = childnode 
- 667              elif childnode.localName == "SETUP": 
- 668                  setupnode = childnode 
- 669   
- 670          # 2.2.1 Background 
- 671          if backgroundnode is not None: 
- 672              bkgddict = parseBackground(backgroundnode) 
- 673              bkgdtype = bkgddict["Type"] 
- 674              measure.setBackground(bkgdtype, bkgddict) 
- 675   
- 676          # 2.2.2 Excluded region 
- 677          if setupnode is not None: 
- 678              for childnode in setupnode.childNodes: 
- 679                  if childnode.localName == "EXCLUDEDREGION": 
- 680                      start, end, bankno = parseExcludedRegion(childnode) 
- 681                      measure.addExcludedRegion(banknumber, start, end) 
- 682                  else: 
- 683                      print childnode.localName 
- 684   
- 685          return measure 
-
         686   
- 687   
-
         688 -def parseRange(rangenode): 
-
         689      """ Status: being coded 
- 690   
- 691      Interpret a Range Node to For Min, Max, Step/Resolution 
- 692   
- 693      Return  :   3-float-tuple:  thmin, thmax, resolution 
- 694      """ 
- 695      thmin = float(getAttributeValue(rangenode, "Thmin")) 
- 696      thmax = float(getAttributeValue(rangenode, "Thmax")) 
- 697      resol = float(getAttributeValue(rangenode, "Resolution")) 
- 698   
- 699      return ( (thmin, thmax, resol) ) 
-
         700   
- 701   
-
         702 -def parseExcludedRegion(excludedregionnode): 
-
         703      """ Status: being coded 
- 704   
- 705      Interpret an Excluded Region XML node 
- 706   
- 707      Return  :   3-tuple (float, float, int):  start, end, bankno 
- 708      """ 
- 709      try: 
- 710          bankno = int(getAttributeValue(excludedregionnode, "Bank")) 
- 711      except TypeError, err: 
- 712          bankno = -1 
- 713      start = float(getAttributeValue(excludedregionnode, "Begin")) 
- 714      end   = float(getAttributeValue(excludedregionnode, "End")) 
- 715   
- 716      return ( (start, end, bankno) ) 
-
         717   
- 718    
-
         719 -def parseBackground(backgroundnode): 
-
         720      """ Interpret a Background Node 
- 721   
- 722      Used by both Measurement XML and Instrument XML 
- 723   
- 724      Return  :   dictionary: parameters of background, keys including 
- 725                  - Type      str 
- 726                  - Bkpos     flaot 
- 727                  - Format    str 
- 728                  - Select    list 
- 729      """ 
- 730      # 1. type 
- 731      bkgdtype = str(backgroundnode.getAttribute("Type")) 
- 732      bkgdattrdict = {} 
- 733   
- 734      # 2. get parameters: Bkpos 
- 735      try: 
- 736          bkpos = float(getAttributeValue(backgroundnode, "Bkpos")) 
- 737          bkgdattrdict["Bkpos"] = bkpos 
- 738      except TypeError, err: 
- 739          pass 
- 740   
- 741      # 3. get background points, file or polynomial 
- 742      if bkgdtype == "Interpolated": 
- 743          bkgdattrdict["Type"] = "I" 
- 744          xmlbkgdfile = getAttributeValue(backgroundnode, "BackgroundFileName")  
- 745          bkgdpoints  = [] 
- 746   
- 747          if xmlbkgdfile is None: 
- 748              # Put background in XML file 
- 749              bkgdattrdict["Format"] = "Selected" 
- 750              for childnode  in backgroundnode.childNodes: 
- 751                  if childnode.localName == "SELECTED": 
- 752                      x = float(childnode.getAttribute("x")) 
- 753                      y = float(childnode.getAttribute("y")) 
- 754                      bkgdpoints.append( (x, y) ) 
- 755              # LOOP-OVER: for childnode  in backgroundnode.childNodes 
- 756              bkgdattrdict["Selected"] = bkgdpoints 
- 757          else: 
- 758              # Using background file 
- 759              bkgdattrdict["Format"] = "File" 
- 760              backgroundfile = str(xmlbkgdfile) 
- 761              bkgdattrdict["File"] = backgroundfile 
- 762   
- 763      elif bkgdtype == "Polynomial": 
- 764          bkgdattrdict["Format"] = "Points" 
- 765          coefflist = [] 
- 766          try: 
- 767              terms = str(backgroundnode.getAttribute("Coefficients")).split() 
- 768              for term in terms: 
- 769                  coefflist.append( float(term) ) 
- 770          except ValueError, err: 
- 771              pass 
- 772          bkgdattrdict["Type"] = "P" 
- 773          # default order value is 12, the max possibility 
- 774          try: 
- 775              order = int(backgroundnode.getAttribute("Order")) 
- 776          except ValueError, err: 
- 777              order = 12 
- 778          bkgdattrdict["Order"] = order 
- 779          bkgdattrdict["Points"] = coefflist 
- 780   
- 781      else: 
- 782          errmsg = "Background Type = %-10s Is Not Supported In XML Layer"% (bkgdtype) 
- 783          raise FitConfigurationError(errmsg)   
- 784   
- 785      return bkgdattrdict 
-
         786   
- 787  # END: Shared Methods 
- 788   
- 789   
-
         791      """ Parse a RefineStrategy provided by users. 
- 792      The XML files are in diffpy.srrietveld defined format 
- 793      """ 
-
         794 -    def __init__(self, refinestrategyxmlfilename): 
-
         795          """ Initialization 
- 796   
- 797          Argument: 
- 798          - refinestrategyxmlfilename :   string, input file 
- 799          """ 
- 800          # 1. initialization of object-scope variables 
- 801          self._infodict = {} 
- 802   
- 803          # 2. import file 
- 804          self._rietxml = importXML(refinestrategyxmlfilename) 
- 805   
- 806          # 3. parse  
- 807          self.parseXML() 
- 808   
- 809          return 
-
         810   
- 811       
-
         812 -    def exportStdDictionary(self): 
-
         813          """ Export the standard information dictionary for RefineStrategy to import 
- 814   
- 815          Return  :   dict 
- 816          """ 
- 817          return self._infodict 
-
         818   
- 819   
-
         820 -    def parseXML(self): 
-
         821          """ Parsing XML file and import to an information dictionary 
- 822   
- 823          Return  :   None 
- 824          """ 
- 825          # 1. Import Root and file check 
- 826          rguidenode = None 
- 827          for childnode in self._rietxml.childNodes: 
- 828              if childnode.localName == "REFINESTRATEGY": 
- 829                  if rguidenode is None: 
- 830                      rguidenode = childnode 
- 831                  else: 
- 832                      errmsg = "XML File Structure Error, More than 1 REFINESTRATEGY Node" 
- 833                      raise NotImplementedError(errmsg) 
- 834          # LOOP-OVER: for childnode in self._rietxml.childNodes 
- 835          if rguidenode is None: 
- 836              errmsg = "XML File Structure Error, More than 1 REFINESTRATEGY Node" 
- 837              raise NotImplementedError(errmsg) 
- 838   
- 839          # 2. Get STEP Node 
- 840          for childnode in rguidenode.childNodes: 
- 841              if childnode.localName == "STEP": 
- 842                  step = int(getAttributeValue(childnode, "Step-Number")) 
- 843                  if not self._infodict.has_key(step): 
- 844                      self._infodict[step] = {} 
- 845                      self._infodict[step]["new"] = [] 
- 846                      self._infodict[step]["rm"]  = [] 
- 847                      self._infodict[step]["type"] = getAttributeValue(childnode, "Refine-Type") 
- 848   
- 849                  for grandchildnode in childnode.childNodes: 
- 850                      # 2.1 add guide 
- 851                      guidename = getAttributeValue(grandchildnode, "Guide") 
- 852                      stage = getAttributeValue(grandchildnode, "Stage") 
- 853                      if stage is None: 
- 854                          stage = 1 
- 855                      else: 
- 856                          stage = int(stage) 
- 857                      if grandchildnode.localName == "ADDGUIDE": 
- 858                          self._infodict[step]["new"].append( (guidename, stage) )  
- 859                      # 2.2 remove guide 
- 860                      elif grandchildnode.localName == "REMOVEGUIDE": 
- 861                          self._infodict[step]["rm"].append( (guidename, stage) ) 
- 862                  # LOOP-OVER: for grandchildnode in childnode.childNodes: 
- 863          # LOOP-OVER: for childnode in rguidenode.childNodes 
- 864   
- 865          return 
-
         866   
- 867  # END-CLASS: RefineStrategyXMLParser 
- 868   
- 869   
- 870  # External and Static Methods for XML  
- 871   
-
         872 -def xmlFilter(xmlobj): 
-
         873      """ Filter an xml.dom.mini.dom object 
- 874   
- 875      Argument     
- 876        xmlobj    :   xml.dom.minidom.Document object (Element) 
- 877   
- 878      Return      :   xml 
- 879      """ 
- 880      for childnode in xmlobj.childNodes[:]: 
- 881          if childnode.nodeType == xmlobj.TEXT_NODE:  
- 882              if childnode.nodeValue.strip() == "": 
- 883                  xmlobj.removeChild(childnode) 
- 884              # else: 
- 885              #     print "Value = <"+childnode.nodeValue+">" 
- 886          else: 
- 887              xmlFilter(childnode) 
- 888   
- 889      return xmlobj 
-
         890   
- 891   
-
         892 -def importXML(filename): 
-
         893      """ Parse an XML file for quick-Rietveld-configuration 
- 894   
- 895      Argument: 
- 896        filename  :   string, XML file name 
- 897   
- 898      Return      :   an xml.dom.minidom.Document object 
- 899      """ 
- 900   
- 901      # 1. import in 
- 902      try: 
- 903          ofile = open(filename, "r") 
- 904          rietxml = xml.dom.minidom.parse(ofile) 
- 905          ofile.close() 
- 906      except IOError, err: 
- 907          errmsg = "%-10s Cannot Be Found"% (filename) 
- 908          raise IOError(errmsg) 
- 909   
- 910      # 2. import 
- 911      rietxml = xmlFilter(rietxml) 
- 912   
- 913      return rietxml 
-
         914   
- 915   
-
         916 -def xmlToString(xmlobj, level, childno): 
-
         917      """ Export an XML object to string 
- 918   
- 919      Argument 
- 920   
- 921      return  :   string 
- 922      """ 
- 923      indentspace = "" 
- 924      for lindex in xrange(level): 
- 925          indentspace += "    " 
- 926      wbuf = indentspace+"%-2s  Type: %-10s   Name: %-10s   Value: %-10s"% \ 
- 927          (childno, xmlobj.nodeType, xmlobj.localName, xmlobj.nodeValue) 
- 928      numchildren = len(xmlobj.childNodes) 
- 929      for cindex in xrange(numchildren): 
- 930          wbuf += "\n%-60s"% (xmlToString(xmlobj.childNodes[cindex], level+1, cindex)) 
- 931   
- 932      return wbuf 
-
         933   
- 934   
-
         935 -def xmlToDict(xmlnode): 
-
         936      """ Convert an XML object to a dictionary 
- 937   
- 938      Argument: 
- 939        xmlboj    :   xml.dom.minidom.Document object 
- 940   
- 941      Return      :   dict 
- 942      """ 
- 943      rdict = {} 
- 944   
- 945      # 1. Attribution 
- 946      if xmlnode.attributes is not None: 
- 947          for index in xrange(xmlnode.attributes.length): 
- 948              attrname = xmlnode.attributes.item(index).name 
- 949              attrval  = xmlnode.attributes.getNamedItem(attrname).value 
- 950              rdict[str(attrname)] = str(attrval) 
- 951   
- 952      # 2. Recursive to call child nodes 
- 953      for child in xmlnode.childNodes: 
- 954          if not rdict.has_key(str(child.localName)): 
- 955              rdict[str(child.localName)] = [] 
- 956          rdict[child.localName].append( xmlToDict(child) ) 
- 957   
- 958      return rdict 
-
         959   
- 960   
-
         961 -def getAttributeValue(elementnode, key): 
-
         962      """ Get the value of an attribute in an element node 
- 963   
- 964      Argument: 
- 965        elementnode   :   an Dom element node instance 
- 966        key           :   string, key/name of an attribute 
- 967   
- 968      Return          :   string, value of instrument 
- 969      """ 
- 970      try: 
- 971          value = elementnode.attributes.getNamedItem(key).value 
- 972          value = str(value) 
- 973      except AttributeError, err: 
- 974          value = None 
- 975   
- 976      return value 
-
         977   
- 978   
-
         979 -def getXMLNodeAttributes(xmlnode, attrdict): 
-
         980      """ Retrieve the attributes (float) of an XML node and store in a dictionary 
- 981   
- 982      Arguments: 
- 983      - xmlnode   :   XML node 
- 984      - attribdict:   dictionary  
- 985   
- 986      Return      :   None 
- 987      """ 
- 988      # 1. Get All Keys 
- 989      tempkeys = xmlnode.attributes.keys() 
- 990   
- 991      # 2. Build Dictionary 
- 992      for tempkey in tempkeys: 
- 993          key = str(tempkey) 
- 994          val = str(xmlnode.getAttribute(tempkey)) 
- 995          try: 
- 996              attrdict[key] = float(val) 
- 997              if val.count(".") == 0: 
- 998                  attrdict[key] = int(val) 
- 999          except ValueError: 
-1000              attrdict[key] = val 
-1001   
-1002      return 
-
        1003   
-1004   
-
        1005 -def getInstrumentInformation(xmlfilename): 
-
        1006      """ Get the instrument name from an XML instrument file 
-1007   
-1008      Argument: 
-1009        xmlfilename   :   str 
-1010   
-1011      Return          :   dictionary 
-1012                          - str, type of instrument 
-1013                          - str, name of instrument 
-1014      """ 
-1015      # 1. Import instrument 
-1016      instrumentxml = importXML(xmlfilename) 
-1017      instrumentnode = None 
-1018      for childnode in instrumentxml.childNodes: 
-1019          if childnode.localName == "INSTRUMENT": 
-1020              instrumentnode = childnode 
-1021   
-1022      # 2. Validate & Further Process 
-1023      infodict = {} 
-1024      if instrumentnode is None: 
-1025          errmsg = "No INSTRUMENT Node, Not A Valid Instrument XML File" 
-1026          raise FitConfigurationError(errmsg) 
-1027       
-1028      iname = str(getAttributeValue(instrumentnode, "Name")) 
-1029      itype = str(getAttributeValue(instrumentnode, "Type")) 
-1030   
-1031      infodict["Name"] = iname 
-1032      infodict["Type"] = itype 
-1033   
-1034      # 3. parse instrument 
-1035      if itype.lower() == "xray": 
-1036          energynode = None 
-1037          for childnode in instrumentnode.childNodes: 
-1038              if childnode.localName == "ENERGY": 
-1039                  energynode = childnode 
-1040          # LOOP-OVER 
-1041   
-1042          # 3.1 energy node information 
-1043          if energynode is not None: 
-1044              wavelength = float(energynode.getAttribute("Lambda")) 
-1045              infodict["Lambda"] = wavelength 
-1046   
-1047      # END-IF 
-1048   
-1049      return infodict 
-
        1050   
-1051   
-
        1052 -def getStructureInformation(xmlfilename): 
-
        1053      """ Get the instrument name from an XML instrument file 
-1054   
-1055      Argument: 
-1056      - xmlfilename   :   str 
-1057   
-1058      Return          :   dictionary 
-1059                          - str, type of instrument 
-1060                          - str, name of instrument 
-1061      """ 
-1062      # 1. Import instrument 
-1063      structurexml = importXML(xmlfilename) 
-1064      structurenode = None 
-1065      for childnode in structurexml.childNodes: 
-1066          if childnode.localName == "MODEL": 
-1067              structurenode = childnode 
-1068   
-1069      # 2. Validate & Further Process 
-1070      infodict = {} 
-1071      if structurenode is None: 
-1072          errmsg = "No MODEL Node, Not A Valid Instrument XML File" 
-1073          raise FitConfigurationError(errmsg) 
-1074       
-1075      iname = str(getAttributeValue(structurenode, "Name")) 
-1076   
-1077      infodict["Name"] = iname 
-1078      # END-IF 
-1079   
-1080      return infodict 
-
        1081   
-1082   
-1083   
-
        1084 -def importExcludedRegionFile(xmlfilename): 
-
        1085      """ Reading the standard Excluded-Region input file, 
-1086      and export the excludedregion-list 
-1087   
-1088      Argument: 
-1089      - xmlfilename   :   str 
-1090   
-1091      Return          :   dict. key = Bank ID (default = 0).  value = list 
-1092      """ 
-1093      # 1. Import XML 
-1094      exregionxml = importXML(xmlfilename) 
-1095      setupnode   = None 
-1096      for childnode in exregionxml.childNodes: 
-1097          if childnode.localName == "SETUP": 
-1098              setupnode = childnode 
-1099   
-1100      # 2. Validate & Further Process 
-1101      if setupnode is None: 
-1102          errmsg = "No SETUP Node, Not A Valid Instrument XML File" 
-1103          raise FitConfigurationError(errmsg) 
-1104   
-1105      # 3. parse instrument 
-1106      excludedregions = {} 
-1107      for childnode in setupnode.childNodes: 
-1108          if childnode.localName == "EXCLUDEDREGION": 
-1109              # 3.1 Read value 
-1110              begin  = float(getAttributeValue(childnode, "Begin")) 
-1111              end    = float(getAttributeValue(childnode, "End")) 
-1112              bankid = int(getAttributeValue(childnode, "Bank")) 
-1113   
-1114              # 3.2 Set up 
-1115              if not excludedregions.has_key(bankid): 
-1116                  excludedregions[bankid] = [] 
-1117              excludedregions[bankid].append( (begin, end) ) 
-1118          # END-IF 
-1119      # LOOP-OVER 
-1120   
-1121      return excludedregions 
-
        1122   
-
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           Home      Trees      Indices      Help   
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        - - Package srrietveld :: - Module xmlinterface :: - Class InstrumentXMLParser - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class InstrumentXMLParser

        source code

        -
        -object --+
-         |
-        InstrumentXMLParser
-
        - -
        -
        -XML Parser to parse an instrument XML file
-
-Instantiate: 
-  InstrumentXMLParser(instrumentfilename)
-
-


        - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - instrumentfilename)
        - Initialization of InstrumentXMLParser...        		 - source code - -
        - -
        -   - - - - - - -
        getInstrument(self)
        - Get the Instrument of this XML file        		 - source code - -
        - -
        -   - - - - - - -
        parseXMLInstrument(self)
        - Parse instrument XML file to instrument node to Instrument        		 - source code - -
        - -
        -   - - - - - - -
        parseInstrumentNode(self, - instrumentnode)
        - Intepret an instrument and set up the following        		 - source code - -
        - -
        -   - - - - - - -
        parsePattern(self, - patnode)
        - interpret a Pattern node including: (1) Pattern file name (2) - background file (optional) or background polynomials (3) excluded - region (optional)        		 - source code - -
        - -
        -   - - - - - - -
        parsePeakProfile(self, - peakprofilenode)
        - Construct a PeakProfile parameter value dictionary...        		 - source code - -
        - -
        -

        Inherited from object: - __delattr__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__, - __str__ -

        -
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        Properties[hide private]
        -
        -

        Inherited from object: - __class__ -

        -
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        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - instrumentfilename) -
        (Constructor) -

        -         		source code  -
        - - 
        -Initialization of InstrumentXMLParser
-
-Argument:
-- instrumentfilename    :   str, xml input file
-
-
        -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        getInstrument(self) -

        -         		source code  -
        - -

        Get the Instrument of this XML file

        - Return : Instrument -
        -
        -
        -
        - -
        - -
        - - -
        -

        parseXMLInstrument(self) -

        -         		source code  -
        - -

        Parse instrument XML file to instrument node to Instrument

        - Return : diffpy.srrietveld.Instrument instance -
        -
        -
        -
        - -
        - -
        - - -
        -

        parseInstrumentNode(self, - instrumentnode) -

        -         		source code  -
        - -

        Intepret an instrument and set up the following

        - Return : 2-tuple, Instrument object, list of dictionary as - dataset -
        -
        -
        -
        - -
        - -
        - - -
        -

        parsePattern(self, - patnode) -

        -         		source code  -
        - -

        interpret a Pattern node including: (1) Pattern file name (2) - background file (optional) or background polynomials (3) excluded region - (optional)

        - Return : dictionary dataset -
        -
        -
        -
        - -
        - -
        - - -
        -

        parsePeakProfile(self, - peakprofilenode) -

        -         		source code  -
        - - 
        -Construct a PeakProfile parameter value dictionary
-
-Argument:
-- peakprofilenode   :   XML node
-
-Return  :   dictionary of parameters
-
-
        -
        -
        -
        -
        -
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        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:24 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.xmlinterface.MeasurementXMLParser-class.html b/static_root/doc/srrietveld/developers/srrietveld.xmlinterface.MeasurementXMLParser-class.html deleted file mode 100644 index 71ef2af3..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.xmlinterface.MeasurementXMLParser-class.html +++ /dev/null @@ -1,380 +0,0 @@ - - - - - srrietveld.xmlinterface.MeasurementXMLParser - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module xmlinterface :: - Class MeasurementXMLParser - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class MeasurementXMLParser

        source code

        -
        -object --+
-         |
-        MeasurementXMLParser
-
        - -
        -Parsing measurement XML file

        - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - measurementfilenamelist)
        - Initialization - -Assumption: -1.        		 - source code - -
        - -
        -   - - - - - - -
        getMeasurements(self)
        - Get the measurements/list of Measurment due to experiement        		 - source code - -
        - -
        -   - - - - - - -
        parseXMLMeasurement(self, - measurementxml)
        - Parse measurement XML file to measurement nodes list...        		 - source code - -
        - -
        -   - - - - - - -
        parseMeasurementNode(self, - measurementnode, - instrumenttype)
        - Parse and set up and Measurement Object for a single Bank...        		 - source code - -
        - -
        -

        Inherited from object: - __delattr__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__, - __str__ -

        -
        - - - - - - - - - -
        - - - - - -
        Properties[hide private]
        -
        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - measurementfilenamelist) -
        (Constructor) -

        -         		source code  -
        - - 
        -Initialization
-
-Assumption: 
-1. one measurement XML file stands for one experiment
-
-Argument:
-- measurementfilenamelist   :   list of str, 
-                                measurment XML file name
-
-Return  :   None
-
-
        -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        getMeasurements(self) -

        -         		source code  -
        - -

        Get the measurements/list of Measurment due to experiement

        - Return : list of list of Measurement -
        -
        -
        -
        - -
        - -
        - - -
        -

        parseXMLMeasurement(self, - measurementxml) -

        -         		source code  -
        - - 
        -Parse measurement XML file to measurement nodes list
-
-Argument:
-- measurementxml    :   str, XML node
-
-Return  :   list, diffpy.srrietveld.Measurement
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        parseMeasurementNode(self, - measurementnode, - instrumenttype) -

        -         		source code  -
        - - 
        -Parse and set up and Measurement Object for a single Bank
-
-Arguments:
-- measurementnode   :   XML node for a single bank measurement
-- measurementtype   :   str, 
-
-Return              :   Measurement instance
-
-
        -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.xmlinterface.RefineStrategyXMLParser-class.html b/static_root/doc/srrietveld/developers/srrietveld.xmlinterface.RefineStrategyXMLParser-class.html deleted file mode 100644 index 58aecf0e..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.xmlinterface.RefineStrategyXMLParser-class.html +++ /dev/null @@ -1,266 +0,0 @@ - - - - - srrietveld.xmlinterface.RefineStrategyXMLParser - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module xmlinterface :: - Class RefineStrategyXMLParser - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class RefineStrategyXMLParser

        source code

        -Parse a RefineStrategy provided by users. The XML files are in - diffpy.srrietveld defined format

        - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - refinestrategyxmlfilename)
        - Initialization...        		 - source code - -
        - -
        -   - - - - - - -
        exportStdDictionary(self)
        - Export the standard information dictionary for RefineStrategy to - import        		 - source code - -
        - -
        -   - - - - - - -
        parseXML(self)
        - Parsing XML file and import to an information dictionary        		 - source code - -
        - -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - refinestrategyxmlfilename) -
        (Constructor) -

        -         		source code  -
        - - 
        -Initialization
-
-Argument:
-- refinestrategyxmlfilename :   string, input file
-
-
        -
        -
        -
        -
        - -
        - -
        - - -
        -

        exportStdDictionary(self) -

        -         		source code  -
        - -

        Export the standard information dictionary for RefineStrategy to - import

        - Return : dict -
        -
        -
        -
        - -
        - -
        - - -
        -

        parseXML(self) -

        -         		source code  -
        - -

        Parsing XML file and import to an information dictionary

        - Return : None -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
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        - - - - - diff --git a/static_root/doc/srrietveld/developers/srrietveld.xmlinterface.StructureXMLParser-class.html b/static_root/doc/srrietveld/developers/srrietveld.xmlinterface.StructureXMLParser-class.html deleted file mode 100644 index 39a0c3c5..00000000 --- a/static_root/doc/srrietveld/developers/srrietveld.xmlinterface.StructureXMLParser-class.html +++ /dev/null @@ -1,358 +0,0 @@ - - - - - srrietveld.xmlinterface.StructureXMLParser - - - - - - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - - Package srrietveld :: - Module xmlinterface :: - Class StructureXMLParser - - - - - - -
        [hide private]
        [frames] | no frames]
        -
        - -

        Class StructureXMLParser

        source code

        -
        -object --+
-         |
-        StructureXMLParser
-
        - -
        -
        -XML parser for structure XML file defined in SrRietveld
-
-Instantiate:
-  StructureXMLParser(structurefilename)
-
-


        - - - - - - - - - - - - - - - - - - - - - - -
        - - - - - -
        Instance Methods[hide private]
        -
        -   - - - - - - -
        __init__(self, - structurefilename)
        - Initialization of StructureXMLParser...        		 - source code - -
        - -
        -   - - - - - - -
        getStructure(self)
        - Get the model/list of phases        		 - source code - -
        - -
        -   - - - - - - -
        parseXMLModel(self)
        - Parse model XML file to model nodes list        		 - source code - -
        - -
        -   - - - - - - -
        parsePhaseNode(self, - phasenode)
        - Construct a Phase objects from a MODEL note        		 - source code - -
        - -
        -

        Inherited from object: - __delattr__, - __getattribute__, - __hash__, - __new__, - __reduce__, - __reduce_ex__, - __repr__, - __setattr__, - __str__ -

        -
        - - - - - - - - - -
        - - - - - -
        Properties[hide private]
        -
        -

        Inherited from object: - __class__ -

        -
        - - - - - - -
        - - - - - -
        Method Details[hide private]
        -
        - -
        - -
        - - -
        -

        __init__(self, - structurefilename) -
        (Constructor) -

        -         		source code  -
        - - 
        -Initialization of StructureXMLParser
-
-Argument:
-- structurefilename :   str
-
-
        -
        -
        Overrides: - object.__init__ -
        -
        -
        -
        - -
        - -
        - - -
        -

        getStructure(self) -

        -         		source code  -
        - -

        Get the model/list of phases

        - Return : List of Phases -
        -
        -
        -
        - -
        - -
        - - -
        -

        parseXMLModel(self) -

        -         		source code  -
        - -

        Parse model XML file to model nodes list

        - Return : list of diffpy.srrietveld.Phase instances -
        -
        -
        -
        - -
        - -
        - - -
        -

        parsePhaseNode(self, - phasenode) -

        -         		source code  -
        - -

        Construct a Phase objects from a MODEL note

        - Return : list of Phase objects -
        -
        -
        -
        -
        - - - - - - - - - - - - - - - - - -
           Home      Trees      Indices      Help   
        - - - - - -
        - Generated by Epydoc 3.0beta1 on Fri Mar 20 14:19:24 2009 - - http://epydoc.sourceforge.net -
        - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-everything.html b/static_root/doc/srrietveld/developers/toc-everything.html deleted file mode 100644 index 5d24d18c..00000000 --- a/static_root/doc/srrietveld/developers/toc-everything.html +++ /dev/null @@ -1,434 +0,0 @@ - - - - - Everything - - - - - -

        Everything

        -
        -

        All Classes

        - srrietveld.atominfo.AtomDicts
        srrietveld.datafileconverter.DataFileParser
        srrietveld.datafileconverter.FullProfFreeFormatParser
        srrietveld.datafileconverter.GEMDataParser
        srrietveld.datafileconverter.NPDFDataParser
        srrietveld.datafileconverter.RAPDFDataParser
        srrietveld.datafileconverter.XYSigmaFileParser
        srrietveld.datamanager.DataManager
        srrietveld.dataprocessnpdf.NPDFData
        srrietveld.instrument.ConstWavelengthInstrument
        srrietveld.instrument.Instrument
        srrietveld.instrument.NeutronCWInstrument
        srrietveld.instrument.TOFInstrument
        srrietveld.instrument.ThermalNeutronTOFInstrument
        srrietveld.instrument.XrayInstrument
        srrietveld.mar_utilities.ChiFile
        srrietveld.mar_utilities.MarImage
        srrietveld.mar_utilities.MarSetup
        srrietveld.mar_utilities.SpecMarExposure
        srrietveld.measurements.Measurement
        srrietveld.modelrw.CifRW
        srrietveld.modelrw.ModelRW
        srrietveld.monitormem.MemoryMonitor
        srrietveld.parallelrefinecontrol.ParallelRefinementControl
        srrietveld.plot2d.Plot2D
        srrietveld.plot2d.PlotInfo2D
        srrietveld.plot2d.PlotMatLib
        srrietveld.refinebackend.RietveldEngine
        srrietveld.refineguides.ADPGuide
        srrietveld.refineguides.AbsorptionCorrectionGuide
        srrietveld.refineguides.AtomGuide
        srrietveld.refineguides.BackgroundGuide
        srrietveld.refineguides.ExpDecayGuide
        srrietveld.refineguides.FractionalCoordinateGuide
        srrietveld.refineguides.InstrumentGuide
        srrietveld.refineguides.LatticeGuide
        srrietveld.refineguides.MeasurementGuide
        srrietveld.refineguides.OccupancyGuide
        srrietveld.refineguides.PeakShapeGuide
        srrietveld.refineguides.RefineGuide
        srrietveld.refineguides.SampleGuide
        srrietveld.refineguides.ScaleGuide
        srrietveld.refineguides.WavelengthGuide
        srrietveld.refineguides.ZeroGuide
        srrietveld.refinehistory.RefineHistory
        srrietveld.refinemanager.MultiStepRefineManager
        srrietveld.refinesetup.AbsorptionCorrectionRefineSetup
        srrietveld.refinesetup.AnisotropicADPRefineSetup
        srrietveld.refinesetup.AtomFractionalCoordinateRefineSetup
        srrietveld.refinesetup.ConstantWaveSymmetricPeakShapeRefineSetup
        srrietveld.refinesetup.CubicRefineSetup
        srrietveld.refinesetup.HexagonalRefineSetup
        srrietveld.refinesetup.InterpolatedBackgroundRefineSetup
        srrietveld.refinesetup.IsotropicADPRefineSetup
        srrietveld.refinesetup.LatticeRefineSetup
        srrietveld.refinesetup.MonoclinicRefineSetup
        srrietveld.refinesetup.OccRefineSetup
        srrietveld.refinesetup.OrthorhombicRefineSetup
        srrietveld.refinesetup.PolynomialBackgroundRefineSetup
        srrietveld.refinesetup.PseudoVoigtExpDSpacingRefineSetup
        srrietveld.refinesetup.RefineSetup
        srrietveld.refinesetup.RegularPseudoVoigtRefineSetup
        srrietveld.refinesetup.ScaleFactorRefineSetup
        srrietveld.refinesetup.SplitPseudoVoigRefineSetup
        srrietveld.refinesetup.TCHPseudoVoigtRefineSetup
        srrietveld.refinesetup.TOFExpDecayRefineSetup
        srrietveld.refinesetup.TOFPseudoVoigtRefinement
        srrietveld.refinesetup.TetragonalRefineSetup
        srrietveld.refinesetup.TrigonalRefineSetup
        srrietveld.refinesetup.WavelengthRefineSetup
        srrietveld.refinesetup.ZeroShiftRefineSetup
        srrietveld.refinesetup.ZeroShiftThermoRefineSetup
        srrietveld.refinestrategy.CalibratedLebailRefineStrategy
        srrietveld.refinestrategy.CalibratedRietveldRefineStrategy
        srrietveld.refinestrategy.CalibratedTOFRietveldRefineStrategy
        srrietveld.refinestrategy.CalibratedXrayFullProfRefineStrategy
        srrietveld.refinestrategy.CalibratedXrayGSASRefineStrategy
        srrietveld.refinestrategy.CalibratedXrayRietveldRefineStrategy
        srrietveld.refinestrategy.CalibrationTOFFullProfRefineStrategy
        srrietveld.refinestrategy.CalibrationTOFGSASRefineStrategy
        srrietveld.refinestrategy.CalibrationTOFRietveldRefineStrategy
        srrietveld.refinestrategy.CalibrationXrayFullProfRefineStrategy
        srrietveld.refinestrategy.CalibrationXrayGSASRefineStrategy
        srrietveld.refinestrategy.CalibrationXrayRietveldRefineStrategy
        srrietveld.refinestrategy.CloseRietveldRefineStrategy
        srrietveld.refinestrategy.RefineStrategy
        srrietveld.refinestrategy.SctrachLebailRefineStrategy
        srrietveld.refinestrategy.UserDefinedRefineStrategy
        srrietveld.sequentialrefinecontrol.SeqRefineController
        srrietveld.utilbackground.BackgroundProcess
        srrietveld.utilbackground.XrayBackgroundProcess
        srrietveld.viserrors.VisualizationError
        srrietveld.xmlconvertor.cifToxml
        srrietveld.xmlgenerator.ExcludedRegionXMLGenerator
        srrietveld.xmlgenerator.GEMMeasurementXMLGenerator
        srrietveld.xmlgenerator.InstrumentXMLGenerator
        srrietveld.xmlgenerator.MeasurementXMLGenerator
        srrietveld.xmlgenerator.ModelXMLGenerator
        srrietveld.xmlgenerator.NPDFMeasurementXMLGenerator
        srrietveld.xmlgenerator.NeutronCWInstrumentMeasurementXMLGenerator
        srrietveld.xmlgenerator.POWGENMeasurementXMLGenerator
        srrietveld.xmlgenerator.RAPDFMeasurementXMLGenerator
        srrietveld.xmlgenerator.RefineStrategyXMLGenerator
        srrietveld.xmlgenerator.SeqFitRecordXMLGenerator
        srrietveld.xmlgenerator.TOFMeasurementXMLGenerator
        srrietveld.xmlgenerator.TOFXMLGenerator
        srrietveld.xmlgenerator.ThermalNeutronTOFXMLGenerator
        srrietveld.xmlgenerator.XMLGenerator
        srrietveld.xmlgenerator.XrayInstrumentMeasurementXMLGenerator
        srrietveld.xmlgenerator.XrayInstrumentXMLGenerator
        srrietveld.xmlinterface.InstrumentXMLParser
        srrietveld.xmlinterface.MeasurementXMLParser
        srrietveld.xmlinterface.RefineStrategyXMLParser
        srrietveld.xmlinterface.StructureXMLParser

        All Functions

        - srrietveld.atominfo.getAtomNumberByName
        srrietveld.autobackgroundselect.autoBackgroundSelection
        srrietveld.autobackgroundselect.filterBackgroundPoints
        srrietveld.auxiliary.getHomeValueIndex
        srrietveld.auxiliary.getValueIndex
        srrietveld.auxiliary.optionToString
        srrietveld.auxiliary.readOption
        srrietveld.auxiliary.searchdict
        srrietveld.auxiliary.testmain
        srrietveld.datafileconverter.convertChiToGSAS
        srrietveld.datafileconverter.convertChiToXYSigma
        srrietveld.datafileconverter.convertXYSigmaToChi
        srrietveld.datafileconverter.dataFileFormat
        srrietveld.datamanager.duplicateModel
        srrietveld.datamanager.isGoodFit
        srrietveld.datamanager.loadFit
        srrietveld.datamanager.searchClosestValue
        srrietveld.dataprocessnpdf.exportRawGSA
        srrietveld.enduserscripts.plot2D
        srrietveld.enduserscripts.refineByScript
        srrietveld.enduserscripts.simpleFit
        srrietveld.gsasfileparser.MapKey
        srrietveld.gsasfileparser.genTOFInstrument
        srrietveld.gsasfileparser.importFromGSASexp
        srrietveld.gsasfileparser.parseGSASiparm
        srrietveld.instrument.getInstrument
        srrietveld.instrument.isPatternOneBank
        srrietveld.io.getDataFromColumnFile
        srrietveld.io.listFileNamesInDirectory
        srrietveld.io.writeToColumnFile
        srrietveld.mar_utilities.defineMarSetup
        srrietveld.mar_utilities.getSpecMarExposures
        srrietveld.midscript.Cubic
        srrietveld.midscript.addAtom
        srrietveld.midscript.addComponent
        srrietveld.midscript.checkMust
        srrietveld.midscript.genFit
        srrietveld.midscript.genLattice
        srrietveld.midscript.genPeakProfile
        srrietveld.midscript.getPatterns
        srrietveld.midscript.initBackground
        srrietveld.midscript.initCWNeutronPattern
        srrietveld.midscript.initCWXrayPattern
        srrietveld.midscript.initCrystalPhase
        srrietveld.midscript.initCylindricalAbsorptionCorrection
        srrietveld.midscript.initExponentialDecay
        srrietveld.midscript.initInterpolatedBackground
        srrietveld.midscript.initPolynomialBackground
        srrietveld.midscript.initProfileGaussian
        srrietveld.midscript.initProfilePseudoVoigt
        srrietveld.midscript.initProfilePseudoVoigtIkedaCarpenter
        srrietveld.midscript.initProfileSplitPseudoVoigt
        srrietveld.midscript.initProfileTCHPseudoVoigt
        srrietveld.midscript.initPseudoVoigtExp
        srrietveld.midscript.initPseudoVoigtExpDSpacing
        srrietveld.midscript.initTOFPattern
        srrietveld.midscript.initThermalExponentialDecay
        srrietveld.midscript.initThermalTOFPattern
        srrietveld.midscript.locateRefinableParameter
        srrietveld.midscript.mapStructure
        srrietveld.midscript.reloadData
        srrietveld.midscript.replaceStructureModel
        srrietveld.midscript.set2ThetaSymmetricPeakProfile
        srrietveld.midscript.setCWPattern
        srrietveld.midscript.setExcludedRegion
        srrietveld.midscript.setPattern
        srrietveld.midscript.setRefineRegion
        srrietveld.mixedphaseanalyzer.searchPeaks
        srrietveld.modelrw.importCIF
        srrietveld.monitormem.garbageCheck
        srrietveld.phasescript.genPhaseCIF
        srrietveld.phasescript.genPhaseDict
        srrietveld.phasescript.getTuple
        - srrietveld.plot2d._isFloat
        -
        - srrietveld.plot2d._isFloatList
        -
        - srrietveld.plot2d._isInt
        -
        - srrietveld.plot2d._isIntList
        -
        - srrietveld.plot2d._plotPattern
        -
        - srrietveld.plot2d._rebinArray
        - srrietveld.plot2d.plot2D
        srrietveld.plot2d.plotFit
        srrietveld.plot2d.plotObservedPattern
        srrietveld.plot2d.plotPattern
        srrietveld.plot2d.removeRegion
        srrietveld.refinemanager.getProcessID
        srrietveld.refinemanager.isSinglePatternType
        srrietveld.refinemanager.loadMultiStepRefinements
        srrietveld.setBackend
        srrietveld.spacegroupinfo.getCrystalSystemFromSpaceGroup
        srrietveld.srrietveldconfiguration.__main__
        srrietveld.stringutilfunction.startWith
        srrietveld.uisupport.convertCHIDataFileFormatFullProf
        srrietveld.uisupport.convertCHIDataFileFormatGSAS
        srrietveld.uisupport.convertDataFilesFormat
        srrietveld.uisupport.convertDataFormat
        srrietveld.uisupport.genFileListFromInfoFile
        srrietveld.uisupport.genFileListFromTemplate
        srrietveld.uisupport.genRAPDFXMLTemplate
        srrietveld.uisupport.getRefinementStrategy
        srrietveld.uisupport.independentFit
        srrietveld.uisupport.isOfTemplate
        srrietveld.uisupport.mapDataFileToStructure
        srrietveld.uisupport.readRAPDFXML
        srrietveld.uisupport.sequentialFit
        srrietveld.uisupport.singleRaPDFFit
        srrietveld.utilbackground.convertQbackground
        srrietveld.utilbackground.genBackground
        srrietveld.utilbackground.genStandardBackground
        srrietveld.utilbackground.replaceInterpolatedBackground
        srrietveld.utilinstrument.genInstrument
        srrietveld.utilinstrument.genXMLGenerator
        srrietveld.utilplot.caldDiff
        srrietveld.utilplot.exportColumnFiles
        srrietveld.utilrapdf.getRAPDFInstrument
        srrietveld.utilrefineguide.activeVariable
        srrietveld.utilrefineguide.genADPRefineSetup
        srrietveld.utilrefineguide.genAbsorptionCorrectionRefineSetup
        srrietveld.utilrefineguide.genAtomFractionalPositionSetup
        srrietveld.utilrefineguide.genBackgroundRefineSetup
        srrietveld.utilrefineguide.genLatticeRefineSetup
        srrietveld.utilrefineguide.genPeakShapeRefineSetup
        srrietveld.utilrefineguide.genScaleRefineSetup
        srrietveld.utilrefineguide.genTOFExpDecayRefinement
        srrietveld.utilrefineguide.genVarName
        srrietveld.utilrefineguide.genWavelengthRefineSetup
        srrietveld.utilrefineguide.genZeroRefineSetup
        srrietveld.utilrefineguide.getLatticeInGroup
        srrietveld.utilrefineguide.locateSharingSite
        srrietveld.utilrefineguide.sortByAtomNumber
        srrietveld.utilrefineguide.sortByAtomTag
        srrietveld.utilsequentialrefine.getSolutionSeqXML
        srrietveld.utilsequentialrefine.loadSeqRefineController
        srrietveld.utilsequentialrefine.parseStructureSeqXML
        srrietveld.utilunits.convert2THETAtoD
        srrietveld.utilunits.convertDto2THETA
        srrietveld.utilunits.convertDtoTOF
        srrietveld.utilunits.convertTOFtoD
        srrietveld.viewer3d.GetSpaceGroup
        srrietveld.viewer3d.checkExternalPackage
        srrietveld.viewer3d.plotPhase
        srrietveld.viewer3d.set3DViewer
        srrietveld.viewer3d.startPyMol
        srrietveld.viewer3d.startVMD
        srrietveld.viewer3d.viewer3D
        srrietveld.xmlinterface.getAttributeValue
        srrietveld.xmlinterface.getInstrumentInformation
        srrietveld.xmlinterface.getStructureInformation
        srrietveld.xmlinterface.getXMLNodeAttributes
        srrietveld.xmlinterface.importExcludedRegionFile
        srrietveld.xmlinterface.importXML
        srrietveld.xmlinterface.parseBackground
        srrietveld.xmlinterface.parseExcludedRegion
        srrietveld.xmlinterface.parseRange
        srrietveld.xmlinterface.xmlFilter
        srrietveld.xmlinterface.xmlToDict
        srrietveld.xmlinterface.xmlToString

        All Variables

        - srrietveld.__id__
        srrietveld.atominfo.__id__
        srrietveld.autobackgroundselect.__id__
        - srrietveld.auxiliary._DEBUGMODE
        - srrietveld.auxiliary.__id__
        srrietveld.datafileconverter.__id__
        srrietveld.datamanager.MAXRP
        srrietveld.datamanager.__id__
        srrietveld.dataprocessnpdf.__id__
        srrietveld.enduserscripts.All
        srrietveld.enduserscripts.ETA
        srrietveld.enduserscripts.__id__
        srrietveld.enduserscripts.fracCoords
        srrietveld.enduserscripts.latParms
        srrietveld.enduserscripts.scale
        srrietveld.enduserscripts.zeroShift
        srrietveld.gsasfileparser.__id__
        srrietveld.instrument.__id__
        srrietveld.instrument.myEngine
        srrietveld.io.__id__
        srrietveld.mar_utilities.__id__
        - srrietveld.mar_utilities._spec_mar_exposures
        - srrietveld.measurements.__id__
        srrietveld.midscript.__id__
        srrietveld.midscript.myEngine
        srrietveld.mixedphaseanalyzer.__id__
        srrietveld.modelrw.__id__
        srrietveld.monitormem.__id__
        srrietveld.myEngine
        - srrietveld.parallelrefinecontrol._SCREENOUTPUT
        - srrietveld.parallelrefinecontrol.__id__
        srrietveld.phasescript.__id__
        srrietveld.plot2d.__id__
        - srrietveld.plot2d._offsetMultiplier
        - srrietveld.qbackgrounds.Qbackground
        srrietveld.qbackgrounds.__id__
        srrietveld.refinebackend.__id__
        srrietveld.refineguides.ETA
        - srrietveld.refineguides._DEBUG
        - srrietveld.refineguides.__id__
        srrietveld.refinehistory.__id__
        - srrietveld.refinemanager._DBOUTPUT
        -
        - srrietveld.refinemanager._DEBUG
        -
        - srrietveld.refinemanager._DEBUG01
        -
        - srrietveld.refinemanager._MEMCHECK
        -
        - srrietveld.refinemanager._SCREENOUTPUT
        - srrietveld.refinemanager.__id__
        srrietveld.refinemanager.myEngine
        - srrietveld.refinesetup._DEBUG
        -
        - srrietveld.refinesetup._DEBUG_ARG
        - srrietveld.refinesetup.__id__
        srrietveld.refinestrategy.__id__
        - srrietveld.sequentialrefinecontrol._MEMCHECK
        -
        - srrietveld.sequentialrefinecontrol._OUTPUT
        -
        - srrietveld.sequentialrefinecontrol._SCREENOUTPUT
        - srrietveld.sequentialrefinecontrol.__id__
        srrietveld.sequentialrefinecontrol.myEngine
        srrietveld.spacegroupinfo.CystalStructureNameDict
        srrietveld.spacegroupinfo.SpacegroupIDDict
        srrietveld.spacegroupinfo.SpacegroupNameDict
        srrietveld.spacegroupinfo.__id__
        srrietveld.srrietveldconfiguration.__id__
        srrietveld.stringutilfunction.__id__
        - srrietveld.uisupport._MEMCHECK
        - srrietveld.uisupport.__id__
        srrietveld.utilbackground.__id__
        srrietveld.utilinstrument.__id__
        srrietveld.utilplot.__id__
        srrietveld.utilrapdf.__id__
        - srrietveld.utilrefineguide._DEBUGOUTPUT
        - srrietveld.utilrefineguide.__id__
        srrietveld.utilsequentialrefine.__id__
        srrietveld.utilunits.CONST_ARCDEGREE
        srrietveld.utilunits.CONST_DEGREEARC
        srrietveld.utilunits.__id__
        srrietveld.viewer3d.__id__
        - srrietveld.viewer3d._viewer
        -
        - srrietveld.viewer3d._viewers
        - srrietveld.viserrors.__id__
        srrietveld.xmlgenerator.__id__
        srrietveld.xmlinterface.__id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld-module.html deleted file mode 100644 index 12d92740..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld-module.html +++ /dev/null @@ -1,35 +0,0 @@ - - - - - srrietveld - - - - - -

        Module srrietveld

        -
        -

        Functions

        - setBackend

        Variables

        - __id__
        myEngine
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.atominfo-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.atominfo-module.html deleted file mode 100644 index a009d4a1..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.atominfo-module.html +++ /dev/null @@ -1,36 +0,0 @@ - - - - - atominfo - - - - - -

        Module atominfo

        -
        -

        Classes

        - AtomDicts

        Functions

        - getAtomNumberByName

        Variables

        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.autobackgroundselect-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.autobackgroundselect-module.html deleted file mode 100644 index facefa10..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.autobackgroundselect-module.html +++ /dev/null @@ -1,35 +0,0 @@ - - - - - autobackgroundselect - - - - - -

        Module autobackgroundselect

        -
        -

        Functions

        - autoBackgroundSelection
        filterBackgroundPoints

        Variables

        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.auxiliary-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.auxiliary-module.html deleted file mode 100644 index ea8b2308..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.auxiliary-module.html +++ /dev/null @@ -1,42 +0,0 @@ - - - - - auxiliary - - - - - -

        Module auxiliary

        -
        -

        Functions

        - getHomeValueIndex
        getValueIndex
        optionToString
        readOption
        searchdict
        testmain

        Variables

        -
        - _DEBUGMODE
        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.datafileconverter-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.datafileconverter-module.html deleted file mode 100644 index 3412e799..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.datafileconverter-module.html +++ /dev/null @@ -1,44 +0,0 @@ - - - - - datafileconverter - - - - - -

        Module datafileconverter

        -
        -

        Classes

        - DataFileParser
        FullProfFreeFormatParser
        GEMDataParser
        NPDFDataParser
        RAPDFDataParser
        XYSigmaFileParser

        Functions

        - convertChiToGSAS
        convertChiToXYSigma
        convertXYSigmaToChi
        dataFileFormat

        Variables

        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.datamanager-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.datamanager-module.html deleted file mode 100644 index 9c0b501a..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.datamanager-module.html +++ /dev/null @@ -1,40 +0,0 @@ - - - - - datamanager - - - - - -

        Module datamanager

        -
        -

        Classes

        - DataManager

        Functions

        - duplicateModel
        isGoodFit
        loadFit
        searchClosestValue

        Variables

        - MAXRP
        __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.dataprocessnpdf-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.dataprocessnpdf-module.html deleted file mode 100644 index 3e9269c7..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.dataprocessnpdf-module.html +++ /dev/null @@ -1,36 +0,0 @@ - - - - - dataprocessnpdf - - - - - -

        Module dataprocessnpdf

        -
        -

        Classes

        - NPDFData

        Functions

        - exportRawGSA

        Variables

        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.enduserscripts-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.enduserscripts-module.html deleted file mode 100644 index 8f33b6f1..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.enduserscripts-module.html +++ /dev/null @@ -1,42 +0,0 @@ - - - - - enduserscripts - - - - - -

        Module enduserscripts

        -
        -

        Functions

        - plot2D
        refineByScript
        simpleFit

        Variables

        - All
        ETA
        __id__
        fracCoords
        latParms
        scale
        zeroShift
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.gsasfileparser-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.gsasfileparser-module.html deleted file mode 100644 index 764e2a77..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.gsasfileparser-module.html +++ /dev/null @@ -1,37 +0,0 @@ - - - - - gsasfileparser - - - - - -

        Module gsasfileparser

        -
        -

        Functions

        - MapKey
        genTOFInstrument
        importFromGSASexp
        parseGSASiparm

        Variables

        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.instrument-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.instrument-module.html deleted file mode 100644 index 841fec33..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.instrument-module.html +++ /dev/null @@ -1,43 +0,0 @@ - - - - - instrument - - - - - -

        Module instrument

        -
        -

        Classes

        - ConstWavelengthInstrument
        Instrument
        NeutronCWInstrument
        TOFInstrument
        ThermalNeutronTOFInstrument
        XrayInstrument

        Functions

        - getInstrument
        isPatternOneBank

        Variables

        - __id__
        myEngine
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.io-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.io-module.html deleted file mode 100644 index a57b0167..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.io-module.html +++ /dev/null @@ -1,36 +0,0 @@ - - - - - io - - - - - -

        Module io

        -
        -

        Functions

        - getDataFromColumnFile
        listFileNamesInDirectory
        writeToColumnFile

        Variables

        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.mar_utilities-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.mar_utilities-module.html deleted file mode 100644 index 21792dda..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.mar_utilities-module.html +++ /dev/null @@ -1,43 +0,0 @@ - - - - - mar_utilities - - - - - -

        Module mar_utilities

        -
        -

        Classes

        - ChiFile
        MarImage
        MarSetup
        SpecMarExposure

        Functions

        - defineMarSetup
        getSpecMarExposures

        Variables

        - __id__
        - _spec_mar_exposures
        -
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.measurements-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.measurements-module.html deleted file mode 100644 index e2eda929..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.measurements-module.html +++ /dev/null @@ -1,34 +0,0 @@ - - - - - measurements - - - - - -

        Module measurements

        -
        -

        Classes

        - Measurement

        Variables

        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.midscript-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.midscript-module.html deleted file mode 100644 index a6d34b2b..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.midscript-module.html +++ /dev/null @@ -1,69 +0,0 @@ - - - - - midscript - - - - - -

        Module midscript

        -
        -

        Functions

        - Cubic
        addAtom
        addComponent
        checkMust
        genFit
        genLattice
        genPeakProfile
        getPatterns
        initBackground
        initCWNeutronPattern
        initCWXrayPattern
        initCrystalPhase
        initCylindricalAbsorptionCorrection
        initExponentialDecay
        initInterpolatedBackground
        initPolynomialBackground
        initProfileGaussian
        initProfilePseudoVoigt
        initProfilePseudoVoigtIkedaCarpenter
        initProfileSplitPseudoVoigt
        initProfileTCHPseudoVoigt
        initPseudoVoigtExp
        initPseudoVoigtExpDSpacing
        initTOFPattern
        initThermalExponentialDecay
        initThermalTOFPattern
        locateRefinableParameter
        mapStructure
        reloadData
        replaceStructureModel
        set2ThetaSymmetricPeakProfile
        setCWPattern
        setExcludedRegion
        setPattern
        setRefineRegion

        Variables

        - __id__
        myEngine
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.mixedphaseanalyzer-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.mixedphaseanalyzer-module.html deleted file mode 100644 index 712e7704..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.mixedphaseanalyzer-module.html +++ /dev/null @@ -1,34 +0,0 @@ - - - - - mixedphaseanalyzer - - - - - -

        Module mixedphaseanalyzer

        -
        -

        Functions

        - searchPeaks

        Variables

        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.modelrw-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.modelrw-module.html deleted file mode 100644 index a3518808..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.modelrw-module.html +++ /dev/null @@ -1,37 +0,0 @@ - - - - - modelrw - - - - - -

        Module modelrw

        -
        -

        Classes

        - CifRW
        ModelRW

        Functions

        - importCIF

        Variables

        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.monitormem-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.monitormem-module.html deleted file mode 100644 index ca3045e5..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.monitormem-module.html +++ /dev/null @@ -1,36 +0,0 @@ - - - - - monitormem - - - - - -

        Module monitormem

        -
        -

        Classes

        - MemoryMonitor

        Functions

        - garbageCheck

        Variables

        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.parallelrefinecontrol-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.parallelrefinecontrol-module.html deleted file mode 100644 index 21b337fa..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.parallelrefinecontrol-module.html +++ /dev/null @@ -1,37 +0,0 @@ - - - - - parallelrefinecontrol - - - - - -

        Module parallelrefinecontrol

        -
        -

        Classes

        - ParallelRefinementControl

        Variables

        -
        - _SCREENOUTPUT
        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.phasescript-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.phasescript-module.html deleted file mode 100644 index c20d78c5..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.phasescript-module.html +++ /dev/null @@ -1,36 +0,0 @@ - - - - - phasescript - - - - - -

        Module phasescript

        -
        -

        Functions

        - genPhaseCIF
        genPhaseDict
        getTuple

        Variables

        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.plot2d-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.plot2d-module.html deleted file mode 100644 index 68605cac..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.plot2d-module.html +++ /dev/null @@ -1,63 +0,0 @@ - - - - - plot2d - - - - - -

        Module plot2d

        -
        -

        Classes

        - Plot2D
        PlotInfo2D
        PlotMatLib

        Functions

        -
        - _isFloat
        -
        - _isFloatList
        -
        - _isInt
        -
        - _isIntList
        -
        - _plotPattern
        -
        - _rebinArray
        - plot2D
        plotFit
        plotObservedPattern
        plotPattern
        removeRegion

        Variables

        - __id__
        - _offsetMultiplier
        -
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.qbackgrounds-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.qbackgrounds-module.html deleted file mode 100644 index 004b381e..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.qbackgrounds-module.html +++ /dev/null @@ -1,33 +0,0 @@ - - - - - qbackgrounds - - - - - -

        Module qbackgrounds

        -
        -

        Variables

        - Qbackground
        __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.refinebackend-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.refinebackend-module.html deleted file mode 100644 index f60229e4..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.refinebackend-module.html +++ /dev/null @@ -1,34 +0,0 @@ - - - - - refinebackend - - - - - -

        Module refinebackend

        -
        -

        Classes

        - RietveldEngine

        Variables

        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.refineguides-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.refineguides-module.html deleted file mode 100644 index 7e9dce24..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.refineguides-module.html +++ /dev/null @@ -1,53 +0,0 @@ - - - - - refineguides - - - - - -

        Module refineguides

        -
        -

        Classes

        - ADPGuide
        AbsorptionCorrectionGuide
        AtomGuide
        BackgroundGuide
        ExpDecayGuide
        FractionalCoordinateGuide
        InstrumentGuide
        LatticeGuide
        MeasurementGuide
        OccupancyGuide
        PeakShapeGuide
        RefineGuide
        SampleGuide
        ScaleGuide
        WavelengthGuide
        ZeroGuide

        Variables

        - ETA
        - _DEBUG
        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.refinehistory-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.refinehistory-module.html deleted file mode 100644 index 74980555..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.refinehistory-module.html +++ /dev/null @@ -1,34 +0,0 @@ - - - - - refinehistory - - - - - -

        Module refinehistory

        -
        -

        Classes

        - RefineHistory

        Variables

        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.refinemanager-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.refinemanager-module.html deleted file mode 100644 index 2169c676..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.refinemanager-module.html +++ /dev/null @@ -1,54 +0,0 @@ - - - - - refinemanager - - - - - -

        Module refinemanager

        -
        -

        Classes

        - MultiStepRefineManager

        Functions

        - getProcessID
        isSinglePatternType
        loadMultiStepRefinements

        Variables

        -
        - _DBOUTPUT
        -
        - _DEBUG
        -
        - _DEBUG01
        -
        - _MEMCHECK
        -
        - _SCREENOUTPUT
        - __id__
        myEngine
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.refinesetup-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.refinesetup-module.html deleted file mode 100644 index 08b070fb..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.refinesetup-module.html +++ /dev/null @@ -1,65 +0,0 @@ - - - - - refinesetup - - - - - -

        Module refinesetup

        -
        -

        Classes

        - AbsorptionCorrectionRefineSetup
        AnisotropicADPRefineSetup
        AtomFractionalCoordinateRefineSetup
        ConstantWaveSymmetricPeakShapeRefineSetup
        CubicRefineSetup
        HexagonalRefineSetup
        InterpolatedBackgroundRefineSetup
        IsotropicADPRefineSetup
        LatticeRefineSetup
        MonoclinicRefineSetup
        OccRefineSetup
        OrthorhombicRefineSetup
        PolynomialBackgroundRefineSetup
        PseudoVoigtExpDSpacingRefineSetup
        RefineSetup
        RegularPseudoVoigtRefineSetup
        ScaleFactorRefineSetup
        SplitPseudoVoigRefineSetup
        TCHPseudoVoigtRefineSetup
        TOFExpDecayRefineSetup
        TOFPseudoVoigtRefinement
        TetragonalRefineSetup
        TrigonalRefineSetup
        WavelengthRefineSetup
        ZeroShiftRefineSetup
        ZeroShiftThermoRefineSetup

        Variables

        -
        - _DEBUG
        -
        - _DEBUG_ARG
        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.refinestrategy-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.refinestrategy-module.html deleted file mode 100644 index 68be1179..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.refinestrategy-module.html +++ /dev/null @@ -1,49 +0,0 @@ - - - - - refinestrategy - - - - - -

        Module refinestrategy

        -
        -

        Classes

        - CalibratedLebailRefineStrategy
        CalibratedRietveldRefineStrategy
        CalibratedTOFRietveldRefineStrategy
        CalibratedXrayFullProfRefineStrategy
        CalibratedXrayGSASRefineStrategy
        CalibratedXrayRietveldRefineStrategy
        CalibrationTOFFullProfRefineStrategy
        CalibrationTOFGSASRefineStrategy
        CalibrationTOFRietveldRefineStrategy
        CalibrationXrayFullProfRefineStrategy
        CalibrationXrayGSASRefineStrategy
        CalibrationXrayRietveldRefineStrategy
        CloseRietveldRefineStrategy
        RefineStrategy
        SctrachLebailRefineStrategy
        UserDefinedRefineStrategy

        Variables

        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.sequentialrefinecontrol-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.sequentialrefinecontrol-module.html deleted file mode 100644 index 16f01254..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.sequentialrefinecontrol-module.html +++ /dev/null @@ -1,44 +0,0 @@ - - - - - sequentialrefinecontrol - - - - - -

        Module sequentialrefinecontrol

        -
        -

        Classes

        - SeqRefineController

        Variables

        -
        - _MEMCHECK
        -
        - _OUTPUT
        -
        - _SCREENOUTPUT
        - __id__
        myEngine
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.spacegroupinfo-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.spacegroupinfo-module.html deleted file mode 100644 index 7264404d..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.spacegroupinfo-module.html +++ /dev/null @@ -1,37 +0,0 @@ - - - - - spacegroupinfo - - - - - -

        Module spacegroupinfo

        -
        -

        Functions

        - getCrystalSystemFromSpaceGroup

        Variables

        - CystalStructureNameDict
        SpacegroupIDDict
        SpacegroupNameDict
        __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.srrietveldconfiguration-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.srrietveldconfiguration-module.html deleted file mode 100644 index a7a6a9da..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.srrietveldconfiguration-module.html +++ /dev/null @@ -1,34 +0,0 @@ - - - - - srrietveldconfiguration - - - - - -

        Module srrietveldconfiguration

        -
        -

        Functions

        - __main__

        Variables

        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.stringutilfunction-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.stringutilfunction-module.html deleted file mode 100644 index 10870071..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.stringutilfunction-module.html +++ /dev/null @@ -1,34 +0,0 @@ - - - - - stringutilfunction - - - - - -

        Module stringutilfunction

        -
        -

        Functions

        - startWith

        Variables

        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.uisupport-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.uisupport-module.html deleted file mode 100644 index b1d155f5..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.uisupport-module.html +++ /dev/null @@ -1,50 +0,0 @@ - - - - - uisupport - - - - - -

        Module uisupport

        -
        -

        Functions

        - convertCHIDataFileFormatFullProf
        convertCHIDataFileFormatGSAS
        convertDataFilesFormat
        convertDataFormat
        genFileListFromInfoFile
        genFileListFromTemplate
        genRAPDFXMLTemplate
        getRefinementStrategy
        independentFit
        isOfTemplate
        mapDataFileToStructure
        readRAPDFXML
        sequentialFit
        singleRaPDFFit

        Variables

        -
        - _MEMCHECK
        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.utilbackground-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.utilbackground-module.html deleted file mode 100644 index 8b9f26d8..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.utilbackground-module.html +++ /dev/null @@ -1,40 +0,0 @@ - - - - - utilbackground - - - - - -

        Module utilbackground

        -
        -

        Classes

        - BackgroundProcess
        XrayBackgroundProcess

        Functions

        - convertQbackground
        genBackground
        genStandardBackground
        replaceInterpolatedBackground

        Variables

        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.utilinstrument-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.utilinstrument-module.html deleted file mode 100644 index 8922779f..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.utilinstrument-module.html +++ /dev/null @@ -1,35 +0,0 @@ - - - - - utilinstrument - - - - - -

        Module utilinstrument

        -
        -

        Functions

        - genInstrument
        genXMLGenerator

        Variables

        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.utilplot-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.utilplot-module.html deleted file mode 100644 index 4820e1aa..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.utilplot-module.html +++ /dev/null @@ -1,35 +0,0 @@ - - - - - utilplot - - - - - -

        Module utilplot

        -
        -

        Functions

        - caldDiff
        exportColumnFiles

        Variables

        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.utilrapdf-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.utilrapdf-module.html deleted file mode 100644 index 510f02f8..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.utilrapdf-module.html +++ /dev/null @@ -1,34 +0,0 @@ - - - - - utilrapdf - - - - - -

        Module utilrapdf

        -
        -

        Functions

        - getRAPDFInstrument

        Variables

        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.utilrefineguide-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.utilrefineguide-module.html deleted file mode 100644 index 694ddbd3..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.utilrefineguide-module.html +++ /dev/null @@ -1,52 +0,0 @@ - - - - - utilrefineguide - - - - - -

        Module utilrefineguide

        -
        -

        Functions

        - activeVariable
        genADPRefineSetup
        genAbsorptionCorrectionRefineSetup
        genAtomFractionalPositionSetup
        genBackgroundRefineSetup
        genLatticeRefineSetup
        genPeakShapeRefineSetup
        genScaleRefineSetup
        genTOFExpDecayRefinement
        genVarName
        genWavelengthRefineSetup
        genZeroRefineSetup
        getLatticeInGroup
        locateSharingSite
        sortByAtomNumber
        sortByAtomTag

        Variables

        -
        - _DEBUGOUTPUT
        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.utilsequentialrefine-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.utilsequentialrefine-module.html deleted file mode 100644 index 80512139..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.utilsequentialrefine-module.html +++ /dev/null @@ -1,36 +0,0 @@ - - - - - utilsequentialrefine - - - - - -

        Module utilsequentialrefine

        -
        -

        Functions

        - getSolutionSeqXML
        loadSeqRefineController
        parseStructureSeqXML

        Variables

        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.utilunits-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.utilunits-module.html deleted file mode 100644 index 79129bae..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.utilunits-module.html +++ /dev/null @@ -1,39 +0,0 @@ - - - - - utilunits - - - - - -

        Module utilunits

        -
        -

        Functions

        - convert2THETAtoD
        convertDto2THETA
        convertDtoTOF
        convertTOFtoD

        Variables

        - CONST_ARCDEGREE
        CONST_DEGREEARC
        __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.viewer3d-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.viewer3d-module.html deleted file mode 100644 index f82c6118..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.viewer3d-module.html +++ /dev/null @@ -1,46 +0,0 @@ - - - - - viewer3d - - - - - -

        Module viewer3d

        -
        -

        Functions

        - GetSpaceGroup
        checkExternalPackage
        plotPhase
        set3DViewer
        startPyMol
        startVMD
        viewer3D

        Variables

        - __id__
        - _viewer
        -
        - _viewers
        -
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.viserrors-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.viserrors-module.html deleted file mode 100644 index 08ab5fe1..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.viserrors-module.html +++ /dev/null @@ -1,34 +0,0 @@ - - - - - viserrors - - - - - -

        Module viserrors

        -
        -

        Classes

        - VisualizationError

        Variables

        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.xmlconvertor-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.xmlconvertor-module.html deleted file mode 100644 index 2ccda67e..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.xmlconvertor-module.html +++ /dev/null @@ -1,32 +0,0 @@ - - - - - xmlconvertor - - - - - -

        Module xmlconvertor

        -
        -

        Classes

        - cifToxml
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.xmlgenerator-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.xmlgenerator-module.html deleted file mode 100644 index 83413425..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.xmlgenerator-module.html +++ /dev/null @@ -1,50 +0,0 @@ - - - - - xmlgenerator - - - - - -

        Module xmlgenerator

        -
        -

        Classes

        - ExcludedRegionXMLGenerator
        GEMMeasurementXMLGenerator
        InstrumentXMLGenerator
        MeasurementXMLGenerator
        ModelXMLGenerator
        NPDFMeasurementXMLGenerator
        NeutronCWInstrumentMeasurementXMLGenerator
        POWGENMeasurementXMLGenerator
        RAPDFMeasurementXMLGenerator
        RefineStrategyXMLGenerator
        SeqFitRecordXMLGenerator
        TOFMeasurementXMLGenerator
        TOFXMLGenerator
        ThermalNeutronTOFXMLGenerator
        XMLGenerator
        XrayInstrumentMeasurementXMLGenerator
        XrayInstrumentXMLGenerator

        Variables

        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc-srrietveld.xmlinterface-module.html b/static_root/doc/srrietveld/developers/toc-srrietveld.xmlinterface-module.html deleted file mode 100644 index 9776bce3..00000000 --- a/static_root/doc/srrietveld/developers/toc-srrietveld.xmlinterface-module.html +++ /dev/null @@ -1,50 +0,0 @@ - - - - - xmlinterface - - - - - -

        Module xmlinterface

        -
        -

        Classes

        - InstrumentXMLParser
        MeasurementXMLParser
        RefineStrategyXMLParser
        StructureXMLParser

        Functions

        - getAttributeValue
        getInstrumentInformation
        getStructureInformation
        getXMLNodeAttributes
        importExcludedRegionFile
        importXML
        parseBackground
        parseExcludedRegion
        parseRange
        xmlFilter
        xmlToDict
        xmlToString

        Variables

        - __id__
        -[hide private] - - - - - diff --git a/static_root/doc/srrietveld/developers/toc.html b/static_root/doc/srrietveld/developers/toc.html deleted file mode 100644 index e049a706..00000000 --- a/static_root/doc/srrietveld/developers/toc.html +++ /dev/null @@ -1,77 +0,0 @@ - - - - - Table of Contents - - - - - -

        Table of Contents

        -
        - Everything -
        -

        Modules

        - srrietveld
        srrietveld.atominfo
        srrietveld.autobackgroundselect
        srrietveld.auxiliary
        srrietveld.datafileconverter
        srrietveld.datamanager
        srrietveld.dataprocessnpdf
        srrietveld.enduserscripts
        srrietveld.gsasfileparser
        srrietveld.instrument
        srrietveld.io
        srrietveld.mar_utilities
        srrietveld.measurements
        srrietveld.midscript
        srrietveld.mixedphaseanalyzer
        srrietveld.modelrw
        srrietveld.monitormem
        srrietveld.parallelrefinecontrol
        srrietveld.phasescript
        srrietveld.plot2d
        srrietveld.qbackgrounds
        srrietveld.refinebackend
        srrietveld.refineguides
        srrietveld.refinehistory
        srrietveld.refinemanager
        srrietveld.refinesetup
        srrietveld.refinestrategy
        srrietveld.sequentialrefinecontrol
        srrietveld.spacegroupinfo
        srrietveld.srrietveldconfiguration
        srrietveld.stringutilfunction
        srrietveld.uisupport
        srrietveld.utilbackground
        srrietveld.utilinstrument
        srrietveld.utilplot
        srrietveld.utilrapdf
        srrietveld.utilrefineguide
        srrietveld.utilsequentialrefine
        srrietveld.utilunits
        srrietveld.viewer3d
        srrietveld.viserrors
        srrietveld.xmlconvertor
        srrietveld.xmlgenerator
        srrietveld.xmlinterface
        - [hide private] - - - - - diff --git a/static_root/doc/srrietveld/faq.html b/static_root/doc/srrietveld/faq.html deleted file mode 100644 index 77b8c816..00000000 --- a/static_root/doc/srrietveld/faq.html +++ /dev/null @@ -1,101 +0,0 @@ - - - - - - - - - Frequently Asked Questions — SrRietveld v1.0 documentation - - - - - - - - - -
        -

        Navigation

        - -
        -
        -
        -

        Table Of Contents

        - - -

        This Page

        - - - -
        -
        - -
        -
        -
        -
        - -
        -

        Frequently Asked Questions

        -
        -

        How to add the application path to PYTHONPATH?

        -
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        Navigation

        - -
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        - © Copyright 2011, Peng Tian, Wenduo Zhou, Jiwu Liu, Yingrui Shang, Chris Farrow, Pavol Juhas, Emil Bozin, and Simon Billinge. - Last updated on Jun 07, 2011. - Created using Sphinx 1.0.1. -
        - - \ No newline at end of file diff --git a/static_root/doc/srrietveld/genindex-all.html b/static_root/doc/srrietveld/genindex-all.html deleted file mode 100644 index d28028a5..00000000 --- a/static_root/doc/srrietveld/genindex-all.html +++ /dev/null @@ -1,96 +0,0 @@ - - - - - - - - - Index — SrRietveld v1.0 documentation - - - - - - - - - -
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        Navigation

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        - -
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        - © Copyright 2011, Peng Tian, Wenduo Zhou, Jiwu Liu, Yingrui Shang, Chris Farrow, Pavol Juhas, Emil Bozin, and Simon Billinge. - Last updated on Sep 02, 2011. - Created using Sphinx 1.0.1. -
        - - \ No newline at end of file diff --git a/static_root/doc/srrietveld/genindex.html b/static_root/doc/srrietveld/genindex.html deleted file mode 100644 index 0f428c5d..00000000 --- a/static_root/doc/srrietveld/genindex.html +++ /dev/null @@ -1,101 +0,0 @@ - - - - - - - - - Index — SrRietveld v1.0 documentation - - - - - - - - - -
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        Navigation

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        -

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        Full index on one page

        - - - - - -
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        - -
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        -
        - - -

        Index

        - -

        Index pages by letter:

        - -
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        - -

        Full index on one page - (can be huge)

        -
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        -
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        Navigation

        - -
        -
        - © Copyright 2011, Peng Tian, Wenduo Zhou, Jiwu Liu, Yingrui Shang, Chris Farrow, Pavol Juhas, Emil Bozin, and Simon Billinge. - Last updated on Sep 02, 2011. - Created using Sphinx 1.0.1. -
        - - \ No newline at end of file diff --git a/static_root/doc/srrietveld/index.html b/static_root/doc/srrietveld/index.html deleted file mode 100644 index 2828e6a9..00000000 --- a/static_root/doc/srrietveld/index.html +++ /dev/null @@ -1,283 +0,0 @@ - - - - - - - - - - Welcome to SrRietveld documentation! — SrRietveld 1.0-r6875 documentation - - - - - - - - - - - - -
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        -

        Introduction

        - - -
        -
        - -
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        -
        -
        - -
        -

        Welcome to SrRietveld documentation!

        -

        Welcome to the SrRietveld documentation!

        -

        Software version 1.0-r6875.

        -
        -

        Disclaimer

        -

        Copyright 2009-2013 Trustees of Columbia University in the City of New York.

        -

        The program is distributed under the BSD License.

        -
          -

        • If you use this program to do productive scientific research that leads to publication, we ask that you acknowledge use of the program by citing the following paper in your publication:

          -
          -
            -
          • P. Tian, W. Zhou, J. Liu, Y. Shang, C. L. Farrow, P. Juhas, and -S. J. L. Billinge, SrRietveld: A program for automating -Rietveld refinements for high throughput studies, -arXiv:1006 (2010).
            • -
          -
          -

          Current version of SrRietveld makes use of the FullProf and GSAS Rietveld refinement engines. If you use this program, please also kindly acknowledge use of FullProf and/or GSAS by citing the following:

          -

          If you use GSAS as the refinement engine, please cite the paper:

          -
          -
            -
          • A. C. Larson and R. B. Von Dreele, General Structure Analysis System (GSAS), Los Alamos National Laboratory Report, LAUR 86-748, (2004).
            • -
          -
          -

          If you use FullProf as the refinement engine, please cite the paper:

          -
          -
            -
          • J. Rodriguez-Carvajal, Recent advances in magnetic structure determination by neutron powder diffraction, Physica B, 192, 55-69 (1993).
            • -
          -
          -
          • -
        -
        -

        Redistribution

        -

        Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: -Redistributions of source code must retain the above disclaimer, this list of conditions and the following copyright notice. -Redistributions must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. -Neither the name of COLUMBIA UNIVERSITY nor the names of their contributors may be used to endorse or promote products derived from this software without specific prior written permission.

        -
        - -
        -
        -

        Acknowledgements

        -
        -

        Developers

        -

        SrRietveld is developed as an application of the DiffPy package. -Currently, the DiffPy team is Simon Billinge, Emil Božin, Timur Davis, Chris -Farrow, Pavol Juhás, Peng Tian, and Yingrui Shang. Former members of the project -are Dmitriy Bryndin, Wenduo Zhou, and Jiwu Liu. The project was started at the -Department of Physics and Astronomy, Michigan State University and is now centered -at the Department of Applied Physics and Applied Mathematics at Columbia University -in the city of New York

        -

        SrRietveld is developed and maintained by:

        -
        Peng Tian
-Wenduo Zhou
-Jiwu Liu
-Yingrui Shang
-Pavol Juhas
-Simon Billinge
        -
        -
        -
        -

        Funding

        -

        This software was developed as part of the Distributed Data Analysis of Neutron -Scattering Experiments (DANSE) project funded by the US National Science -Foundation under grant DMR-0520547. More information on DANSE can be found at -http://danse.us. Any opinions, findings, and conclusions or recommendations -expressed in this material are those of the author(s) and do not necessarily -reflect the views of the respective funding bodies.

        -
        -
        -
        -

        SrRietveld Manual

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        -
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        Navigation

        - -
        -
        - © Copyright 2013, Peng Tian, Wenduo Zhou, Jiwu Liu, Yingrui Shang, Chris Farrow, Pavol Juhas, Emil Bozin, and Simon Billinge. - Last updated on Jan 11, 2013. - Created using Sphinx 1.1.3. -
        - - \ No newline at end of file diff --git a/static_root/doc/srrietveld/install.html b/static_root/doc/srrietveld/install.html deleted file mode 100644 index f6108297..00000000 --- a/static_root/doc/srrietveld/install.html +++ /dev/null @@ -1,286 +0,0 @@ - - - - - - - - - - Installation — SrRietveld 1.0-r6875 documentation - - - - - - - - - - - - - -
        -

        Navigation

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        Introduction

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        -

        Tutorial and Example

        - - -
        -
        - -
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        -
        -
        - -
        -

        Installation

        -
        -

        Note

        -

        SrRietveld is written in Python and is a cross platform program. Users can install and use SrRietveld on Windows, Linux/Unix, and Mac, on both 32-bit and 64-bit systems.

        -
        -
        -

        Install GSAS and FullProf

        -

        GSAS and FullProf have to be installed since SrRietveld uses them as backend refinement engines. SrRietveld runs with either engine; however for the greatest functionality we recommend you install both programs.

        -

        If you already have them installed you can use your existing installation. Otherwise you they can be separately downloaded and installed by going to the respective download websites. Follow the instructions on the following websites for a standard installation of FullProf and GSAS:

        -
        -
        -

        Please make sure GSAS and FullProf can run correctly on your -computer. For example, under Linux, tcsh is needed to run the gsas -command. On Ubuntu/Debian system, the tcsh shell can be installed with -the following command:

        -
        sudo apt-get install tcsh
        -
        -

        GSAS requires the libg2c.so.0 shared library, which may not be -included with the recent system version. This library can be -obtained from a previous Ubuntu release at -http://packages.ubuntu.com/hardy/libg2c0/.

        -

        More details about the GSAS installation can be found -here.

        -
        -
        -

        Installation and Setup on Windows

        -

        Windows users can install SrRietveld with a binary installer -SrRietveld-VERSION.exe. Double click the file and follow -the steps in the installation wizard.

        -

        The SrRietveld program short cut icon will be placed on the desktop after the installation is finished. Double click the desktop icon the SrRietveld program should start. SrRietveld may prompt a setup dialog to initialize the setups, such as the GSAS / FullProf installation paths.

        -

        As mentioned before, to start a refinement with SrRietveld, users have to specify the paths of refinement engines (GSAS or FullProf) in SrRietveld. SrRietveld will try to find the GSAS and FullProf executables in the computer, but user can always go to the menu Edit->Settings dialog to specify another location.

        -
        -

        Note

        -

        During the installation, the Microsoft Virtual C++ Redistributable -package will also be installed to provide the necessary dynamic-link -libraries.

        -
        -
        -
        -

        Installation and Setup on Linux, Mac, and Unix

        -
        -

        Install SrRietveld

        -

        SrRietveld is distributed in a source archive SrRietveld-VERSION.tar.gz.

        -

        SrRietveld requires a number of dependencies (other programs) to run. -Many of these are bundled with common Linux distributions such as -Ubuntu. However, you will have to verify that you have the dependencies -installed before SrRietveld can run. The dependencies are described in -dependencies. SrRietveld can be run with GSAS -and/or FullProf as the refinement engine. Either one or the other must -be installed; however it is recommended to instal both.

        -
        -

        Note

        -

        Please make sure all the dependencies are -installed before proceeding further.

        -
        -

        SrRietveld can be installed with the following steps:

        -
        -
          -

        1. Unpack the source archive file

          -
          tar -zxf SrRietveld-VERSION.tar.gz
          -
          -
          2. -

        2. Change to the extracted distribution directory

          -
          cd SrRietveld-VERSION
          -
          -
          3. -

        3. Run the included installation script

          -
          sudo ./install_srrietveld.py
          -
          -

          This checks for required Python libraries and if present, -it installs SrRietveld to default system location. This requires -root privileges as granted by the sudo command. If sudo is not -available, you can install to the user-writable directories by -passing --prefix or --install-dir options to -the installation script.

          -
          -

          Note

          -

          With the --prefix=PREFIXDIR option one needs to -create directories for programs and Python files under the -PREFIXDIR and add them to the PATH and PYTHONPATH environment -variables. These directories can be created as:

          -
          mkdir -p PREFIXDIR/bin
-mkdir -p PREFIXDIR/lib/pythonX.Y/site-packages
          -
          -

          where X.Y must be replaced with the actual Python version, for -example 2.6 for Python 2.6.

          -

          The directories need to be added to the appropriate environment -variables by adding the following lines to the .bashrc -(or .profile, .zshenv as appropriate for your system shell):

          -
          export PATH="PREFIXDIR/bin:${PATH}"
-export PYTHONPATH="PREFIXDIR/lib/pythonX.Y/site-packages:${PYTHONPATH}"
          -
          -

          After all changes to the shell setup file are made, open a new -terminal, if you work in the same termial, run the command:

          -
          source ~/.bashrc
          -
          -

          which will take the environment changes into effect.

          -
          -
          4. -

        4. Test you installation by running

          -
          srrietveld
-
          -
          -

          If it is correctly installed then the SrRietveld GUI window should -open. If the program fails to run, a detailed error message will -appear which may help solve the problem. You may also look for -information from other users at, or post your error message to, -our support group at -srrietveld-dev -to ask for help.

          -

          Please note that GSAS and FullProf have to be installed before -SrRietveld can run any refinement. Details of how to use -SrRietveld can be found in the Tutorial -section.

          -
          5. -
        -
        -
        -
        -

        Dependencies

        -

        SrRietveld require some dependencies when running on Linux/Mac. Most of these dependencies come in many standard Linux installations such as Ubuntu. Please check if they are pre-installed in your computer.

        -

        Otherwise, they can be easily installed by going to the listed websites, downloading and following the installation instructions. If your Linux installation is Ubuntu, see the note below to rapidly download and install all the dependencies.

        -
        -
        -
        Python 2.6 or later
        -
        Python is installed by default on most Linux systems and can be -also fetched from http://www.python.org/download/.
        -
        Python development files
        -
        Headers and other files for building Python extensions with C. -This is usually available as python-dev package in the system -package repository.
        -
        setuptools
        -
        Utility for installing other Python packages. -Available as python-setuptools or python-distribute system -package. Also available at -http://pypi.python.org/pypi/distribute/.
        -
        NumPy 1.1 or later
        -
        functions for scientific computing in Python. -Available as python-numpy system package or from http://www.numpy.org/.
        -
        Matplotlib 0.90 or later
        -
        Python plotting library. -Available as python-matplotlib system package or from -http://matplotlib.org/.
        -
        wxPython 2.8
        -
        graphical user interface toolkit in Python. -Available as python-wxtools system package or from http://wxpython.org/.
        -
        tables 1.6.8 or later
        -
        library for manipulating hierarchical data in HDF5 format. -Available as python-tables system package or from -http://www.pytables.org/.
        -
        -
        -

        On Ubuntu Linux the required dependencies can be all installed with a single -command

        -
        sudo apt-get install \
-   python-dev python-distribute python-numpy \
-   python-matplotlib python-wxtools python-tables
        -
        -

        On a Fedora Linux the dependencies could be installed with

        -
        sudo yum install \
-   python-devel python-setuptools numpy \
-   python-matplotlib-wx wxPython python-tables
        -
        -

        Other Linux distributions may use different software management tools, -but the package names should be similar to those above.

        -
        -
        -
        - - -
        -
        -
        -
        -
        -
        -

        Navigation

        - -
        -
        - © Copyright 2013, Peng Tian, Wenduo Zhou, Jiwu Liu, Yingrui Shang, Chris Farrow, Pavol Juhas, Emil Bozin, and Simon Billinge. - Last updated on Jan 11, 2013. - Created using Sphinx 1.1.3. -
        - - \ No newline at end of file diff --git a/static_root/doc/srrietveld/install_wz.html b/static_root/doc/srrietveld/install_wz.html deleted file mode 100644 index 4b6f67f4..00000000 --- a/static_root/doc/srrietveld/install_wz.html +++ /dev/null @@ -1,205 +0,0 @@ - - - - - - - Installation — SrRietveld v1.0 documentation - - - - - - - - -
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        Navigation

        - -
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        Table Of Contents

        - - -

        This Page

        - - - -
        -
        - -
        -
        -
        -
        - -

        Module Index

        -
        -

        Installation

        -

        The easist way to setup SrRietveld in your computer is to use the easy_install tool kit with Python.

        -

        SrRietveld will use several Diffpy libraries, including:

        -
          -
        1. diffpy.refinementapi
          2. -
        2. diffpy.rietveldapi
          3. -
        3. diffpy.Structure: this package need not be installed again if you have PDFgui installed.
          4. -
        4. diffpy.pyfullprof
          5. -
        5. diffpy.pygsas
          6. -
        6. diffpy.srrietveld
          7. -
        -
        -

        Linux

        -

        For detailed installation instruments, see below.

        -

        Prerequisite

        -
          -
        1. Python: you must have python 2.3 or later installed
          2. -
        2. numpy
          3. -
        3. scipy
          4. -
        4. Fullprof: fp2k must be in PATH
          5. -
        5. GSAS: gsas/exec must be in PATH
          6. -
        6. pexpect: without this package, SrRietveld is not able to use GSAS as refinement engine.
          7. -
        -

        Installation Procedure

        -
          -
        1. Unzip and untar (e.g., tar -xzvf diffpy.package.gz) the downloaded tar balls
          2. -
        2. In the order of diffpy.refinemenapi, diffpy.rietveldapi, diffpy.pyfullprof, -diffpy.pygsas, diffpy.srrietveld, install the package as
          3. -
        -
        -
          -

        1. enter the directory unpacked from the tar ball

          -
          2. -
        2. -
          execute only::
          -

          > sudo ./setup.py install

          -
          -
          -
          3. -
        -
        -

        SrRietveld will be deployed to the analysis computer of SNS’ POWGEN.

        -

        The enthusiastic testers can download the diffpy libraries from DANSE’s repository at: -svn@@danse.us/diffraction

        -
        -
        -

        Mac OSX

        -

        Prerequisite

        -
          -
        1. Python: you must have python 2.3 or later installed on Linux
          2. -
        2. numpy
          3. -
        3. scipy
          4. -
        4. Fullprof: fp2k must be in PATH
          5. -
        5. GSAS: gsas/exec must be in PATH
          6. -
        6. pexpect: without this package, SrRietveld is not able to use GSAS as refinement engine.
          7. -
        -

        Installation Procedure

        -
          -
        1. Unzip and untar (e.g., tar -xzvf diffpy.package.gz) the downloaded tar balls
          2. -
        2. In the order of diffpy.refinemenapi, diffpy.rietveldapi, diffpy.pyfullprof, -diffpy.pygsas, diffpy.srrietveld, install the package as
          3. -
        -
        -
          -
        1. enter the directory unpacked from the tar ball
          2. -
        2. execute: -> sudo ./setup.py install
          3. -
        -
        -

        SrRietveld is able to work on Mac computers using Intel processors -because Fullprof has a release only to Mac with Intel processors. -The installation of SrRietveld on Mac OSX is exactly the same as the procedure for Linux. -We suggest users to download and use MacPython in Bash shell, -rather than the Python package coming with the operating system.

        -

        The enthusiastic testers can download the diffpy libraries from DANSE’s repository at: -svn@danse.us/diffraction

        -
        -
        -

        Windows

        -

        Windows is not currently supported.

        -
        -
        -

        Required third party packages:

        - -
        -

        Community

        -

        There are several Google groups for support and development of SrRietveld -and other DiffPy software. Visit the links below for message archives -or instructions on subscription and posting.

        -

        srrietveld-dev -Please share your comments, desires and suggestions with the developers -by posting to the Diffpy developers’ forum, or by emailing Simon Billinge (sb2896@columbia.edu). -Since we are in the alpha-testing phase there are no user community pages.

        -
        -
        -
        - - -
        -
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        -
        -
        -
        -

        Navigation

        - -
        -
        - © Copyright 2011, Peng Tian, Wenduo Zhou, Jiwu Liu, Yingrui Shang, Chris Farrow, Pavol Juhas, Emil Bozin, and Simon Billinge. - Last updated on Jun 16, 2011. - Created using Sphinx 0.6.4. -
        - - \ No newline at end of file diff --git a/static_root/doc/srrietveld/intro.html b/static_root/doc/srrietveld/intro.html deleted file mode 100644 index da40fc31..00000000 --- a/static_root/doc/srrietveld/intro.html +++ /dev/null @@ -1,204 +0,0 @@ - - - - - - - - - - Introduction — SrRietveld 1.0-r6875 documentation - - - - - - - - - - - - - -
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        Previous topic

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        Welcome to SrRietveld documentation!

        -

        Next topic

        -

        Installation

        - - -
        -
        - -
        -
        -
        -
        - -
        -

        Introduction

        -
        -

        What is SrRietveld?

        -

        SrRietveld is a highly automated software toolkit designed to simplify Rietveld -refinement using neutron and x-ray powder diffraction data. It is designed to simplify -and automate the refinement of large numbers of datasets, such as are becoming available -from modern high-throughput powder diffractometers. SrRietveld takes the -existing Rietveld programs, GSAS and FullProf, and wraps them in a Python -layer allowing the Rietveld refinement process to be automated in -creative ways. The Python wrapping allows tasks to be automated, such as the -strategy (which parameters are switched on in which order) for a single -dataset, and the automation and visualization of refinements of large numbers of datasets.

        -

        SrRietveld is the Rietveld refinement application of the NSF DMR funded -DANSE (Distributed Data Analysis for Neutron Scattering -Experiments) software project.

        -
        -
        -

        Design Principles

        -

        SrRietveld is developed in the Python language using object -oriented programming (OOP) concepts. Python is extensively used in -scientific software development. It is cross-platform and suitable for fast -development. Also there are many well designed packages for scientific -programming and modeling, such as Matplotlib, Numpy and Scipy. The OOP design -enables SrRietveld to be easily maintained and extended.

        -

        The philosophy of the SrRietveld design is to improve the efficiency of a -typical work flow by controlling existing Rietveld refinement engines. A uniform -data structure is implemented in SrRietveld so that the differences in input and -output in different refinement engines will not be noticeable to the users; -i.e., the same data can be refined using either GSAS or FullProf. Pre-written -scripts are provided for automating common tasks, such as refining from coarse -guesses of initial parameters, sequential refinement, etc.. It is also possible -for advanced users to develop their own macro scripts and contribute to the -development of SrRietveld.

        -
        -
        -

        What can SrRietveld do?

        -

        The functions of SrRietveld include:

        -
          -

        • Automatic and user-guided Le-Bail and Rietveld refinements

          -
          -

          Perform multi-step refinement on single experiment data sets

          -
          -
          • -

        • Sequential Rietveld refinement

          -
          -

          Sequentially fit related data sets from a series of experiments

          -
          -
          • -

        • Examine the refinement results

          -
          -

          Plot refinement parameters or calculated patterns at each refinement step

          -
          -
          • -

        • Work with different diffraction types

          -
          -

          Analyze data from time-of-flight neutron, constant wavelength neutron, and constant wavelength X-ray diffraction experiments

          -
          -
          • -
        -
        -
        -

        Merits

        -
          -
        • Highly automated Rietveld execution
          • -
        • User-friendly and easy to learn
          • -
        • Automated analysis of large data sets
          • -
        • Uses conventional refinement engines, such as GSAS and FullProf
          • -
        • Modular software design allowing extension by expert users
          • -
        -
        -
        -

        Community

        -

        SrRietveld-dev Google groups – -Please share your comments, desires and suggestions with the developers by -posting to the DiffPy developers’ forum.

        -
        -
        -

        Contact Us

        -
        -
        -
        Professor Simon Billinge
        -
        Applied Physics and Applied Mathematics Department
        -
        The Fu Foundation School of Engineering and Applied Science
        -
        200 S. W. Mudd Building
        -
        MC 4701, 500 W. 120th Street
        -
        New York, NY 10027
        -
        email: sb2896@columbia.edu
        -
        -
        -
        -
        - - -
        -
        -
        -
        -
        -
        -

        Navigation

        - -
        -
        - © Copyright 2013, Peng Tian, Wenduo Zhou, Jiwu Liu, Yingrui Shang, Chris Farrow, Pavol Juhas, Emil Bozin, and Simon Billinge. - Last updated on Jan 11, 2013. - Created using Sphinx 1.1.3. -
        - - \ No newline at end of file diff --git a/static_root/doc/srrietveld/intro_wz.html b/static_root/doc/srrietveld/intro_wz.html deleted file mode 100644 index 4cf724ba..00000000 --- a/static_root/doc/srrietveld/intro_wz.html +++ /dev/null @@ -1,320 +0,0 @@ - - - - - - - Introduction — SrRietveld v1.0 documentation - - - - - - - - -
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        Navigation

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        Table Of Contents

        - - -

        This Page

        - - - -
        -
        - -
        -
        -
        -
        - -
        -

        Introduction

        -
        -

        What can SrRietveld Do?

        -
          -
        • Diffraction data Rietveld refinement
          • -
        -

        Multiple step refinement on single experiment or co-refinement on several data sets.

        -
          -
        • Sequential Rietveld refinement
          • -
        -

        Sequential fitting on data sets from a series of experiments

        -
          -
        • Calculate theoretical pattern
          • -
        -

        Calculate the line profile from known structure parameters and instrument parameters

        -
          -
        • Examine the refinement results
          • -
        -

        Easily view the results from single / sequential refinements and pattern calculation.

        -
        -
        -

        Merits

        -
          -
        • Highly automated computation
          • -
        • User friendly and easy to learn
          • -
        • Capability to process enormous amount of data in a timely basis
          • -
        • Analysis on sequential data sets
          • -
        • Compatible with main stream Rietveld refinement engines
          • -
        • Designed in modules connected with application programming interfaces (APIs), extensible to work with more engines and able to work as a module with other applications.
          • -
        -

        Rietveld refinement is a process of determining accurate atomic structural -information about crystalline materials from neutron or x-ray powder diffraction. -There are a number of Rietveld computer programs available, both freeware and -commercial. What they have in common is that they require extensive interactions -with the scientist operating them because of the difficulty in converging fits of -the models to the data. They have poor convergence and there is a sharp learning -curve for using them. The codes were mostly written beginning in the 1980’s and -1990’s and are monolithic Fortran programs and it is very difficult to automate -and extend them.

        -

        The goal of the SrRietveld project is to mitigate these problems and make a -Rietveld program that is highly automated, easy to use, and can handle the high -data-rates at POWGEN, and other high throughput neutron and X-ray diffractometers. -There is insufficient time -and resources to write completely new, modular, Rietveld codes -within the DANSE project, so the approach in the SrRietveld project was to wrap -existing Rietveld legacy codes in Python wrappers, allowing -scripts written in Python to automate and control the execution of the existing codes. -In the SrRietveld 3.0a release we have implemented the two most popular Rietveld -programs, Fullprof and GSAS, as engines running in the Python environment. -The design includes a Rietveld API (application programming interface) which -allows users to write scripts in Python that can execute different refinement -engines. In the current release this means that the same data can be refined with -either Fullprof or GSAS, or both. In the future it will allow us to change out -the Rietveld engine with any other Rietveld legacy code, or newly written code, -and users’ scripts will still be operable.

        -
        -
        -

        SrRietveld

        -

        SrRietveld is an open-source crystal structure refinement user-interface (UI) for -reciprocal-space fitting of powder data, or Rietveld analysis.

        -

        SrRietveld is being developed as part of the DANSE software project that is -building data analysis and modeling software to make optimal use of neutron -diffraction data coming from the Spallation Neutron Source.

        -

        SrRietveld is reliable. It will provide the expected features of Rietveld -analysis software, such as that provided by FullProf or GSAS, as well as features -that simplify typical and advanced usage.

        -

        SrRietveld is easy to use. It will provide users with tools to set up Rietveld -refinement in relatively trivial time and launch a series of Rietveld refinement -automatically or semi-automatically until convergence, allowing complex refinement -tasks to be automated and simplified. Meanwhile, SrRietveld provides users tools -to analyze the refinement result visually.

        -

        In addition to providing users with ease-of-use, we wish to enable new science. -In order to satisfy ever-changing user community, extensible, non-proprietary and -supported software, such as SrRietveld, will enable innovation and empower users.

        -

        SrRietveld is fully extensible. It will work by allowing the user to write -scripts in a Python-based scripting language that control and automate the -refinement process It is also then straightforward for a developer to build -simple gui’s on top of the scripts. A library of helper functions is available -to simplify common tasks.

        -

        The major commands available in the current release are listed below

        -
          -
        • supporting diffraction pattern calculation
            -
          1. applied to neutron time-of-flight (multiple banks), neutron constant wavelength, X-ray diffraction data;
            2. -
          -
          • -
        • supporting both FullProf and GSAS as refinement engines. -Exchanging underlying refinement engine is seamless to users
          • -
        • supporting automatic/semi-automatic launched Le-Bail and Rietveld refinements on -single measurements toward final convergence
            -
          1. applied to neutron time-of-flight (multiple banks), neutron constant wavelength, X-ray diffraction data;
            2. -
          2. allowing the user to trace each parameter’s value at each refinement step for further analysis;
            3. -
          3. allowing the user to plot patterns of each refinement step after refinement is finished for further analysis.
            4. -
          -
          • -
        • supporting sequential fitting on a series of measurements from in-situ diffraction experiment, -applied to neutron time-of-flight (multiple banks), neutron constant wavelength, X-ray diffraction data;
            -
          1. providing user with fast access to refined parameters and refinement result (residuals);
            2. -
          2. allowing user to access the refinement detail of each single measurement for further analysis;
            3. -
          -
          • -
        -
        -

        Design principles

        -

        SrRietveld has been designed to provide users with an easy-to-use yet powerful -interface for fitting structure models to powder diffraction data. -It makes use of an object oriented, component based architecture, -which makes it highly extensible and maintainable.

        -

        SrRietveld is written in the Python programming language. Python features a -relaxed and friendly syntax, supports write once, run anywhere -portability, and has extensive libraries and modules for virtually every -task. Software codes written in a variety of programming languages can be -bound into Python, which allows them to be used together. Python is becoming -a popular choice in the scientific computation community.

        -

        SrRietveld is built upon RietveldAPI, which is a library of python scripts to set up, -manage and analyze Rietveld refinements.

        -

        General users can use pre-built scripts to quickly and easily carry out -refinements that are offered as part of the SrRietveld application. In the future, -these will be controlled through a graphical user interface, though currently -they are executed from the command line.

        -

        Power users can build their customized Rietveld refinements by writing high-level -scripts using SrRietveld and rietveldAPI library modules.

        -

        In the 1.0 Beta release, SrRietveld provides the users with a series of -command line scripts to set up, launch and analyze Rietveld refinements.

        -
        -
        -

        Capabilities

        -

        SrRietveld will allow users to perform powerful refinement tasks with little effort. -Python has a friendly and powerful scripting interface that enables -SrRietveld to interact with other Python modules such as matplotlib for -plotting and pymol for structure visualization. The scripting interface to -SrRietveld allows one to easily string together a series of related Rietveld -refinements, analyze the refinement results and optionally feed the results -into other Python-enabled programs. -SrRietveld will soon be enabled to run distributed on a computer cluster -in order to deal with computationally intensive tasks -such as the analysis of data flow high throughput instruments. -Once-difficult refinement strategies, such as -parametric optimization and global optimization are also planned for a -future release. Users can also look forward to automatic Rietveld refinement -that requires a minimal amount of prior knowledge about a crystal structure.

        -

        SrRietveld can manage multiple fits at once. -Each fit can have multiple experimental data sets and structure models. -Fits in a sequence can call upon other fits for their starting parameters, -and configured fits can be queued to run while the user is away. All the -initial, final, and intermediate data are stored in a platform independent -project file that can be loaded on any computer.

        -

        SrRietveld uses the matplotlib -Python package for 2D plotting of data and results. -Matplotlib has a friendly interface so the user can quickly and easily view the -results of a fitting. -SrRietveld lets users plot data from a series of fits and plot it against -selected meta-data (temperature, doping, etc.).

        -
        -
        -
        -

        Fullprof and GSAS

        -

        The FullProf and GSAS programs have been mainly developed for Rietveld analysis -(structure profile refinement) of -neutron (constant wavelength, time of flight, nuclear and magnetic scattering) -or X-ray powder diffraction data -collected at constant or variable step in scattering angle 2theta. -The programs can also be used as a Profile Matching -(or pattern decomposition using Le Bail method) tool, -without knowledge of the structure. -Not all the functionalities of Fullprof and GSAS are available in SrRietveld -as the ??? functions must be implemented in the API. -Currently most of the powder diffraction functionalities, except magnetic scattering, -are implemented. -There is no support for single crystal diffraction in SrRietveld.

        -

        The Fullprof engine and GSAS engine wrappers, called PyFullProf and PyGSAS respectively, -can be used either directly from the Python -command line, or as part of larger and more complex software -applications.

        -
        -
        -

        Availability

        -

        SrRietveld, FullProf and GSAS are open source. -SrRietveld is distributed under a BSD license. -They run on Linux, and all major Unix systems. The source -code is freely available. For more information please contact Professor -Simon Billinge (sb2896@columbia.edu) -or consult the web-page -http://www.diffpy.org. -News of updates and releases will be posted at this website -and on the SrRietveld-users group at -http://groups.google.com/group/SrRietveld-users.

        -
        - -
        -

        Acknowledgement

        -

        This program is part of the DiffPy and DANSE open-source projects -and is available subject to the conditions and terms laid out below.

        -

        If you use this program to do productive scientific research that leads -to publication, we ask that you acknowledge use of the program by citing -the following paper in your publication:

        -
          -
        1. Wenduo Zhou, Peng Tian, Christopher L. Farrow, P. Juhas and S. J. L. Billinge, -To be published.
          2. -
        -

        Copyright 2008, Trustees of Columbia University in the City of New York.

        -

        For more information please visit the project web-page: http://www.diffpy.org/ -or email Prof. Simon Billinge at sb2896@@columbia.edu

        -

        This version of SrRietveld makes use of the FullProf and GSAS Rietveld refinement engine. -If you use this program, as well as citing the paper above, you should acknowledge -use of FullProf and/or GSAS by citing the paper describing the FullProf and/or GSAS:

        -
          -
        1. J. Rodriguez-Carvajal, Recent advances in magnetic structure determination by neutron -powder diffraction, Physica B, 192, 55-69 (1993).
          2. -
        2. Larson A C and von Dreele R B 2000 General structure analysis system(GSAS) -Los Alamos National Laboratory Report No. LAUR 87-748 unpublished
          3. -
        -
        -
        - - -
        -
        -
        -
        -
        -
        -

        Navigation

        - -
        -
        - © Copyright 2011, Peng Tian, Wenduo Zhou, Jiwu Liu, Yingrui Shang, Chris Farrow, Pavol Juhas, Emil Bozin, and Simon Billinge. - Last updated on Jun 16, 2011. - Created using Sphinx 0.6.4. -
        - - \ No newline at end of file diff --git a/static_root/doc/srrietveld/license.html b/static_root/doc/srrietveld/license.html deleted file mode 100644 index 0d95ccd6..00000000 --- a/static_root/doc/srrietveld/license.html +++ /dev/null @@ -1,107 +0,0 @@ - - - - - - - License — SrRietveld v1.0 documentation - - - - - - - - -
        -

        Navigation

        - -
        -
        -
        -

        This Page

        - - - -
        -
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        - -
        -

        License

        -

        This program is part of the DiffPy and DANSE open-source projects and is available subject to the conditions and terms laid out below.

        -

        If you use this program to do productive scientific research that leads to publication, we ask that you acknowledge use of the program by citing the following paper in your publication:

        -
        P. Tian, W. Zhou, J. Liu, Y. Shang, C. L. Farrow, P. Juhas, and S. J. L. Billinge, SrRietveld: A program for automating Rietveld refinements for high throughput studies, arXiv:1006.0435 (2010)
        -
        -

        Current version of SrRietveld makes use of the FullProf and GSAS Rietveld refinement engines. If you use this program, as well as citing the paper above, please kindly acknowledge use of FullProf and/or GSAS by citing the following to instruction paper FullProf and/or GSAS:

        -
        J. Rodriguez-Carvajal, Recent advances in magnetic structure determination by neutron powder diffraction, Physica B, 192, 55-69 (1993).
-
-A. C. Larson and R. B. Von Dreele, General Structure Analysis System(GSAS), Los Alamos National Laboratory Report, LAUR 86-748, (2004).
        -
        -

        For more information please visit the project web-page: http://www.diffpy.org/ or email Prof. Simon Billinge at sb2896@columbia.edu.

        -

        Copyright 2007, Board of Trustees of Michigan State University, Copyright 2008-2010, Board of Trustees of Columbia University in the city of New York. (Copyright holder indicated in each source file).

        -

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        - © Copyright 2011, Peng Tian, Wenduo Zhou, Jiwu Liu, Yingrui Shang, Chris Farrow, Pavol Juhas, Emil Bozin, and Simon Billinge. - Last updated on Jun 16, 2011. - Created using Sphinx 0.6.4. -
        - - \ No newline at end of file diff --git a/static_root/doc/srrietveld/objects.inv b/static_root/doc/srrietveld/objects.inv deleted file mode 100644 index 597069f6..00000000 Binary files a/static_root/doc/srrietveld/objects.inv and /dev/null differ diff --git a/static_root/doc/srrietveld/quickstart.html b/static_root/doc/srrietveld/quickstart.html deleted file mode 100644 index b5062b32..00000000 --- a/static_root/doc/srrietveld/quickstart.html +++ /dev/null @@ -1,585 +0,0 @@ - - - - - - - - - Tutorial — SrRietveld v1.0 documentation - - - - - - - - - -
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        Navigation

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        Table Of Contents

        - - -

        This Page

        - - - -
        -
        - -
        -
        -
        -
        - -
        -

        Tutorial

        -
        -

        SrRietveld Basics

        -
          -
        • A command line version of SrRietveld is currently available. A graphical user
          • -
        -

        interface will be developed in the future release.

        -
          -
        • The structure data, refinement strategy, and instrument data will be stored in
          • -
        -

        XML files, and the files will be passed to the program as option values

        -
          -
        • The SrRietveld input files are in XML format. The syntax of the XML files is
          • -
        -

        illustrated in this user manual. There are some tools provided in SrRietveld to -generate XML file templates.

        -
          -

        • There are three types of input files:

          -
            -
          • Instrument file – defining the parameters related to the instrument and
            • -
          -

          experiment by instrument scientists.

          -
          -

          Importance: required

          -
          -
            -
          • Crystal structure model file – defining the crystal structure model to be
            • -
          -

          refined.

          -
          -

          Importance: required

          -
          -
            -

          • Refinement strategy file – defining the sequence to refine parameters.

            -

            Importance: optional

            -

            If this file is not given, SrRietveld will perform the refinement by using -a default refinement strategy.

            -
            • -
          -
          • -
        -
        -
        -

        SrRietveld Command Lines

        -

        This introduction is base on Linux / Mac machines. Current release of -SrRietveld is not available in Windows

        -
        -

        srr

        -

        After SrRietveld is correctly installed in the computer, the main command for -SrRietveld is srr.

        -

        The format to run the ‘’srr’’ command should be,:

        -
        srr [SCRIPT NAME] [OPTIONs]
        -
        -

        The SCRIPT NAME is a work or abbreviation to tell the program what kind of -task to complete. Then the necessary data will be passed through *OPTION*s. To -get the full list of available *SCRIPT NAME*s, open a terminal, type in:

        -
        srr
-
        -
        -

        or:

        -
        srr --help
-
        -
        -

        a list of script names, their abbreviations, and a short description for each -will be listed in the terminal.

        -

        Similarly, to get immediate help on every script name, simply type in:

        -

        srr [SCRIPT NAME] –help

        -
        -
        -

        srr SCRIPTNAME

        -

        If a script name is given, SrRietveld will prompt the help information if the -script name is correct.

        -
          -

        • Example 1:

          -
          ``> srr refine``
          -
          -

          Output:

          -
          Automatic Launched Refinement On Single Refinement
-
-calculatepattern -h  For Help
          -
          -
          • -

        • Example 2:

          -
          ``> srr cal``
          -
          -

          Output:

          -
          Automatic Launched Refinement On Single Refinement
-
-cal        -h  For Help
          -
          -
          • -

        • Example 3:

          -
          ``> srr xyz``
          -
          -

          Output:

          -
          Script xyz        is not supported.  Programm is quit
-Usage: srr [SCRIPT NAME] [OPTION]...
-SrRietveld User Interface Application.
-Run the task defined by the SCRIPT NAME, where the specifications are listed
-in OPTIONs.
-
-Supported script names include:
          -
          -
          • -
        -

        # cal , calculatepattern Simulate diffraction pattern -# pp , plotpattern Plot the refinement result (pattern) from -# script ‘refine’

        -
        -
        -
        refine, refine Multiple step refinement on single
        -
        experiment or co-refinement on several -data sets
        -
        -
        -

        # sc , saveconfig Save configuration XML file from existing -# files to set up SrRietveld -# seqfit, sequentialfit Sequential fitting on data sets from a -# series of experiements -# vrr , viewrefineresult Viewing the result coming from script -# ‘refine’ -# vspr , viewsamplingfitresult Viewing the result coming from a series -# of sampling refinements -# vsrr , viewsequentialfitresult Viewing the result coming from script -# ‘sequentialfit’

        -
        -
        - --- - - - -
        --h, --helpinfo display this help and exit
        -
        -

        Note that in parenthesis are the corresponding shortened name of the -application script

        -
        -
        -
        -

        srr SCRIPTNAME --help or srr SCRIPTNAME -h

        -

        This command will print the help information of the specified script.

        -
          -

        • Example 1:

          -
          > srr refine --help
          -
          -

          Output:

          -
          • -
        -

        Usage: refine [options]

        -
        -
        Options:
        -
        --- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        --h, --helpshow this help message and exit
        --i INSTRUMENT, --instrument=INSTRUMENT
         (1) Name of Instrument iparm file (2) Name of -Instrument XML File
        --s STRUCTURE, --structure=STRUCTURE
         Name of CIF File (.cif) or SrRietveld Crystal -Structure XML File (.xml)
        --d DATAFILE, --data=DATAFILE
         Full-path Name of Data File
        --r STRATEGYFILE, --strategy=STRATEGYFILE
         (1) Name of Refinement Strategy or (2) Name of -SrRietveld Refinement Strategy File
        ---bank=BANKSBank(s) to refine in T.O.F. data
        --b BACKGROUNDFILE, --background=BACKGROUNDFILE
         Name of Data File Containing Background Parameter or -Background XML file
        --e ENGINE, --engine=ENGINE
         Type of Refinement Engine (i.e.,Refinement Backend). -Fullprof or GSAS
        ---excludedregion=EXCLUDEDREGIONFILE
         Name of XML file to Indicate User Specified Excluded -Region
        ---infofile=INFOFILE
         Information file. Information file contains 2 columns -fordatafile and value of environment quantity (e.g. -temperature)
        ---datadirectory=DATADIRECTORY
         Directory of source data file
        -
        -
        -
        -

        Calculating Pattern

        -

        The first step is to calculate the pattern according to the proposed structure model, -to make sure that the model is not obviously incorrect.

        -

        The proposed structure of NaCl is the structure at room temperature. -Therefore, by referring to NaCl_Info_All.txt, we choose -Data/NaCl_ramp01_10f_200ms_1059.chi as the pattern to compare.

        -
        -
          -

        1. The simplest option that user can use:

          -
          > srr calculatepattern -s s_nacl.xml
          -
          -

          The instrument profile will be searched in the current working directory, -i.e., i_rapdf_idd11.xml

          -
          2. -

        2. User is suggested to specify an instrument file instead:

          -
          > srr calculatepattern -i i_rapdf_idd11_cal.xml -s s_nacl.xml
          -
          -
          3. -

        3. SrRietveld pattern calculation provides more functionalities including

          -
            -
          • compare the calculated pattern to a given data file;
            • -
          -

          Try the complete command as:

          -
          > srr calculatepattern -i i_rapdf_idd11_cal.xml -s s_nacl.xml \
-  -d Data/NaCl_ramp01_10f_200ms_1059.chi \
-  -b backgroundtemp.dat --scale=1.0E-6
          -
          -

          Or:

          -
          > srr calculatepattern --instrument=i_rapdf_idd11_cal.xml --structure=s_nacl.xml \
-  --data=Data/NaCl_ramp01_10f_200ms_1059.chi --background=backgroundtemp.dat \
-  --scale=1.0E-6
          -
          -

          ..image:: figures/f_calculatepattern.png

          -

          The calculated pattern and the real experimental pattern will be plotted against each other. -If the magnitude of them are not close enough, the scale factor can be tuned by inputting -an appropriate value with option –scale.

          -

          The –scale factor should not be large, or the calculated pattern may be overflow.

          -
          4. -
        -
        -
        -
        -

        Refinement on a single measurement srr refine

        -

        It is better to do Rietveld refinement on a single diffraction measurement, -before starting the sequential refinement.

        -

        Because the starting structure model is at room temperature, -we pickup the data set NaCl_ramp01_10f_200ms_1059.chi, -which was measured at room temperature.

        -
          -

        1. Try one of the following commands, which are equivalent to SrRietveld:

          -
          > srr refine -i i_rapdf_idd11_cal.xml -s s_nacl.xml -d Data/NaCl_ramp01_10f_200ms_1059.chi \
-  -b backgrountemp.dat -v refine_1059.proj
-> srr refine --instrument=i_rapdf_idd11_cal.xml --structure=s_nacl.xml \
-  --data=Data/NaCl_ramp01_10f_200ms_1059.chi --background=backgrountemp.dat \
-  --saveas=refine_1059.proj
          -
          -

          The refinement will be launched with the convergence strategy defined in SrRietveld. -And the refinement result will be saved in file refine_1059.proj -The refinement engine in default is Fullprof.

          -

          ..image:: figures/f_refineprocess.png

          -
          2. -

        2. If you do not want to use the automatic background selection provided in SrRietveld, -but rather trust the background points selected by yourself, -you can add one more option -u or --useinputbackground:

          -
          > srr refine -i i_rapdf_idd11_cal.xml -s s_nacl.xml -d Data/NaCl_ramp01_10f_200ms_1059.chi \
-  -b backgrountemp.dat -v refine_1059.proj -u
-> srr refine --instrument=i_rapdf_idd11_cal.xml --structure=s_nacl.xml \
-  --data=Data/NaCl_ramp01_10f_200ms_1059.chi --background=backgrountemp.dat \
-  --saveas=refine_1059.proj --useinputbackground
          -
          -

          The result can be different if you use the background selected by SrRietveld or by yourself.

          -
          3. -

        3. The default refinement backend is FullProf. -You can specify the refinement backend by option --engine (-e). -The supported engine names are

          -
            -
          • Fullprof
            • -
          • GSAS
            • -
          -

          For example, if you want to use GSAS as the refinement backend, the commands can be:

          -
          > srr refine -i i_rapdf_idd11_cal.xml -s s_nacl.xml -d Data/NaCl_ramp01_10f_200ms_1059.chi \
-  -b backgrountemp.dat -v refine_1059.proj -u -e gsas
-> srr refine --instrument=i_rapdf_idd11_cal.xml --structure=s_nacl.xml \
-  --data=Data/NaCl_ramp01_10f_200ms_1059.chi --background=backgrountemp.dat \
-  --saveas=refine_1059.proj --useinputbackground --engine=gsas
          -
          -
          4. -
        -
        -
        -

        Plotting Pattern From Refinement Result srr plotpattern

        -

        Script plotpattern allows the user to view the calculated diffraction pattern, -the observed one and the difference between them.

        -
          -

        1. User can view the diffraction pattern of the final result (last round) as:

          -
          > srr plotpattern --project=refine_1059.proj
-> srr plotpattern -p refine_1059.proj
          -
          -

          ..image:: figures/f_refineplotsingle_best.png

          -
          2. -

        2. User can view the diffraction pattern of at a specific step by option --step, -such as:

          -
          > srr plotpattern -p refine_1059.proj --step=3
-> srr plotpattern --project=refine_1059.proj --step=3
          -
          -
          3. -
        -
        -..image:: figures/f_refineplotsingle_step3.png
        -
          -

        1. The user can also require the patterns to be plot in d-spacing by option ---dspacing. -For example, in this case:

          -
          > srr plotpattern --project=refine_1059.proj --dspacing
          -
          -

          ..image:: figures/f_refineplotsingle_best_dspacing.png

          -
          2. -
        -
        -
        -

        Viewing Refined Parameter Value From Refinement Result srr viewrefineresult

        -

        User can look up a parameter for its value after refinement by command -srr viewrefineresult.

        -
          -

        1. Example 1: read chi^2:

          -
          > srr viewrefineresult -p refine_1059.proj --parameter=chi2`
-> srr viewrefineresult --project=refine_1059.proj --parameter=chi2`
          -
          -

          ..image:: figures/f_refineresult_chi2.png

          -
          2. -

        2. Example 2: read value of Biso of all atoms:

          -
          > srr viewrefineresult -p refine_1059.proj --parameter=biso
-> srr viewrefineresult -project=refine_1059.proj --parameter=biso
          -
          -
          3. -
        -
        -

        These two equivalent commands will give the Biso of both Na and Cl atoms -of the step at which the best convergence is made.

        -

        ..image:: figures/f_refineresult_step3.png

        -
        -
          -

        1. Example 3: Read value of Biso of atom Na:

          -
          > srr viewrefineresult -p refine_1059.proj --parameter=biso --atom=Na
-> srr viewrefineresult -project=refine_1059.proj --parameter=biso --atom=Na
          -
          -
          2. -
        -
        -These will show the parameters’ values with uncertainties. -..image:: figures/f_refineresult_step3.png
        -
          -
        1. If the user is interested to see how one specific parameters changes -along refinement, he/she can add an option --step=all
          2. -
        -
        -
        -

        Saving configuration from saved project file srr saveconfig

        -

        Script saveconfig is multiple purposed to let the user to

        -
          -
        1. extract the information from a refinement project file to a SrRietveld recognizable XML file, -including
            -
          • instrument file
            • -
          • structure file
            • -
          -
          2. -
        2. generate the template of SrRietveld recognizable XML file, including
            -
          • instrument file
            • -
          • structure file
            • -
          • ...
            • -
          -
          3. -
        -

        After a refinement is completed and saved to a SrRietveld project file, -user can export the refined crystal structure to a SrRietveld structure file in XML format, -which can be used as an input for future refinement.

        -

        > srr saveconfig -p refine_1059.proj -s nacl259.xml

        -

        User can also export the refinement strategy file, -such that she/he can modify to the refinement strategy, including sequence of refinement guides, -to refine the structure model again for better convergence.

        -

        srr saveconfig -p refine_1059.proj -r refinestrategy_userdefine.xml

        -

        The user can use any text editor or specific XML editor to modify the XML containing -refinement strategy.

        -

        For example, the user can do further refinement based on the previous refinement result:

        -

        > srr refine -i i_rapdf_idd11_cal.xml -s s_nacl259.xml -d Data/NaCl_ramp01_10f_200ms_1059.chi -b backgrountemp.dat -v refine_1059.proj

        -

        or if with other refinement strategy

        -

        > srr refine -i i_rapdf_idd11_cal.xml -s s_nacl259.xml -d Data/NaCl_ramp01_10f_200ms_1059.chi -b backgrountemp.dat -v refine_1059b.proj -r refinestrategy_userdefine.xml

        -
        -
        -

        Sequential fitting on a series of measurements

        -

        SrRietveld supports sequential refinement on a set of measurements on same material -but in different environment, for example, temperature or pressure.

        -

        In this tutorial, it is a temperature series.

        -

        Before starting the refinement, the user should have

        -
          -
        1. calibrated instrument file: i_rapdf_idd11_cal.xml
          2. -
        2. proposed structure model file: s_nacl.xml, or s_nacl_X.xml that is exported -from the result of previous refinement, for example refine_1059.proj or refine_1059b.proj
          3. -
        3. data-environment parameter value list file: NaCl_Info_All.txt
          4. -
        -

        > srr sequentialfit -i i_radpf_idd11_cal.xml -s s_nacl_02.xml -l Data -f NaCl_Info_All.txt -b backgroundtemp.dat -n T --refinedirection=down --start=295.0 -v seqrefine_nacl.proj

        -

        By this command, SrRietveld will refine all the measurements starting from 295.0 K down to the lowest temperature -measured int the experiment, while all the data are stored in directory Data. -The refinement engine in default is Fullprof.

        -

        With additional option, ---engine=gsas or -e gsas -SrRietveld will use GSAS as refinement engine.

        -

        SrRietveld’s sequential refinement will save the refinement results in several files and directories.

        -

        In the example just shown, SrRietveld will

        -
          -
        1. save all the refinement history and parameter to a single file, seqrefine_nacl.proj. -It will be a large file, but with all information
          2. -
        2. generate a directory named, seqrefine_nacl
          3. -
        3. generate a light-weight XML file in directory seqrefine_nacl. -In this XML file, only the information of chi2, Rwp, and crystal structures are saved.
          4. -
        4. the project files of refinement on every single measurement. -These files will be stored in directory seqrefine_nacl.
          5. -
        -
        -
        -

        View refinement results of sequential refinements

        -

        The user will use a different script: srr viewsequentialrefineresult.py (srvsr) to -look up the parameters from the result of sequential fitting.

        -
          -
        • > srr viewsequentialfitresult -o seqrefine_nacl --parameter=chi2 -p -list chi^2 in all the refinements
          • -
        • > srr viewsequentialfitresult -o seqrefine_nacl --parameter=biso -p -: list Biso of all the atoms in all the refinements
          • -
        • > srr viewsequentialfitresult -o seqrefine_nacl --parameter=biso --atom=Cl -p -: list Biso of atom Cl in all the refinements
          • -
        -

        The option -p is used to plot the result.

        -
        -
        -
        -
        -

        Tutorial On X-ray Diffraction Data

        -

        The purpose of this example is to familiarize the novice user with the -SrRietveld basics.

        -

        The goal is to refine a couple of hundreds of measurements on NaCl -low resolution X-ray powder diffraction data collected at -beamline 11ID-B at at the Advanced Photon Source at Argonne National Laboratory.

        -

        The data files can be

        -
          -
        1. downloaded
          2. -
        2. copied from diffpy.srrietveld package.
          3. -
        -

        Select the directory RAPDF/NaCl

        -

        Inside, you will find

        -
          -
        1. i_rapdf_idd11_cal.xml: the instrument XML file calibrated using Ni data;
          2. -
        2. s_nacl.xml: the structure of NaCl obtained from the literature;
          3. -
        3. backgroundtemp.txt: a background file;
          4. -
        4. NaCl_Inof_All.txt: 2 column file listing the data file name and their corresponding temperature;
          5. -
        5. Directory Data/ containing 321 data sets measured at 321 different temperatures.
          6. -
        -

        More tutorial can be found in ??? -There are some command scripts files with posfix sh.

        -
        -
        - - -
        -
        -
        -
        -
        -
        -

        Navigation

        - -
        -
        - © Copyright 2011, Peng Tian, Wenduo Zhou, Jiwu Liu, Yingrui Shang, Chris Farrow, Pavol Juhas, Emil Bozin, and Simon Billinge. - Last updated on Jun 07, 2011. - Created using Sphinx 1.0.1. -
        - - \ No newline at end of file diff --git a/static_root/doc/srrietveld/quickstart_wz.html b/static_root/doc/srrietveld/quickstart_wz.html deleted file mode 100644 index 97c384b2..00000000 --- a/static_root/doc/srrietveld/quickstart_wz.html +++ /dev/null @@ -1,513 +0,0 @@ - - - - - - - Tutorial — SrRietveld v1.0 documentation - - - - - - - - -
        -

        Navigation

        - -
        -
        -
        -

        Table Of Contents

        - - -

        This Page

        - - - -
        -
        - -
        -
        -
        -
        - -
        -

        Tutorial

        -
        -

        SrRietveld Basics

        -
          -

        • A command line version of SrRietveld is currently available. A graphical user interface will be developed in the future release.

          -
          • -

        • The structure data, refinement strategy, and instrument data will be stored in XML files, and the files will be passed to the program as option values

          -
          • -

        • The SrRietveld input files are in XML format. The syntax of the XML files is illustrated in this user manual. There are some tools provided in SrRietveld to generate XML file templates.

          -
          • -

        • There are three types of input files:

          -
            -

          • Instrument file – defining the parameters related to the instrument and experiment by instrument scientists.

            -

            Importance: required

            -
            • -

          • Crystal structure model file – defining the crystal structure model to be refined.

            -

            Importance: required

            -
            • -

          • Refinement strategy file – defining the sequence to refine parameters.

            -

            Importance: optional

            -

            If this file is not given, SrRietveld will perform the refinement by using a default refinement strategy.

            -
            • -
          -
          • -
        -
        -
        -

        SrRietveld Command Lines

        -

        This introduction is base on Linux / Mac machines. Current release of SrRietveld is not available in Windows

        -
        -

        srr

        -

        After SrRietveld is correctly installed in the computer, the main command for SrRietveld is srr.

        -

        The format to run the ‘’srr’’ command should be,:

        -
        srr [SCRIPT NAME] [OPTIONs]
        -
        -

        The SCRIPT NAME is a work or abbreviation to tell the program what kind of task to complete. Then the necessary data will be passed through *OPTION*s. To get the full list of available *SCRIPT NAME*s, open a terminal, type in:

        -
        srr
-
        -
        -

        or:

        -
        srr --help
-
        -
        -

        a list of script names, their abbreviations, and a short description for each will be listed in the terminal.

        -

        Similarly, to get immediate help on every script name, simply type in:

        -

        srr [SCRIPT NAME] –help

        -
        -
        -

        srr <SCRIPTNAME>

        -

        If a script name is given, SrRietveld will prompt the help information if the script name is correct.

        -
          -

        • Example 1:

          -
          ``> srr calculatepattern``
          -
          -

          Output:

          -
          Automatic Launched Refinement On Single Refinement
-
-calculatepattern -h  For Help
          -
          -
          • -

        • Example 2:

          -
          ``> srr cal``
          -
          -

          Output:

          -
          Automatic Launched Refinement On Single Refinement
-
-cal        -h  For Help
          -
          -
          • -

        • Example 3:

          -
          ``> srr xyz``
          -
          -

          Output:

          -
          Script xyz        is not supported.  Programm is quit
-Usage: srr [SCRIPT NAME] [OPTION]...
-SrRietveld User Interface Application.
-Run the task defined by the SCRIPT NAME, where the specifications are listed in OPTIONs.
-
-Supported script names include:
-    cal   , calculatepattern         Simulate diffraction pattern
-    pp    , plotpattern              Plot the refinement result (pattern) from
-                                     script 'refine'
-    refine, refine                   Multiple step refinement on single
-                                     experiment or co-refinement on several
-                                     data sets
-    sc    , saveconfig               Save configuration XML file from existing
-                                     files to set up SrRietveld
-    seqfit, sequentialfit            Sequential fitting on data sets from a
-                                     series of experiements
-    vrr   , viewrefineresult         Viewing the result coming from script
-                                     'refine'
-    vspr  , viewsamplingfitresult    Viewing the result coming from a series
-                                     of sampling refinements
-    vsrr  , viewsequentialfitresult  Viewing the result coming from script
-                                     'sequentialfit'
-
-        -h, --help
-              info    display this help and exit
-
-Note that in parenthesis are the corresponding shortened name of the application script
          -
          -
          • -
        -
        -
        -

        srr <SCRIPTNAME> --help or srr <SCRIPTNAME> -h

        -

        This command will print the help information of the specified script.

        -
          -

        • Example 1:

          -
          > srr calculatepattern --help
          -
          -

          or:

          -
          > srr cal --help
          -
          -

          Output:

          -
          Usage: cal [options]
-
-Options:
-  -h, --help            show this help message and exit
-  -i INSTRUMENT, --instrument=INSTRUMENT
-                        (1) Name of Instrument (2) Name of Instrument XML File
-  --pcr=PCRFILENAME     Name of Fullprof pcr File
-  --iparm=IPARMFILENAME
-                        Name of GSAS iparm Instrument File
-  -s STRUCTUREXML, --structure=STRUCTUREXML
-                        Name of CIF File (.cif) or SrRietveld Crystal
-                        Structure XML File (.xml)
-  --bank=BANKS          Bank(s) to refine in T.O.F. data
-  -b BACKGROUNDFNAME, --background=BACKGROUNDFNAME
-                        Name of Data File Containing Background Parameter
-  -v SAVEFILENAME, --saveas=SAVEFILENAME
-                        Name of Output File
-  -e ENGINE, --engine=ENGINE
-                        Type of Refinement Engine (i.e.,Refinement Backend).
-                        Fullprof or GSAS
-  --range=RANGE         Range of Calculated Pattern.  Using --range=begin,end
-  --scale=SCALE         Scale factor
-  -a, --autoscale       Automatically scale the calcualted pattern to input
-                        pattern for bettern comparison
-  --compare             Compare with input data file in plot
          -
          -
          • -
        -
        -

        Calculating Pattern

        -

        The first step is to calculate the pattern according to the proposed structure model, -to make sure that the model is not obviously incorrect.

        -

        The proposed structure of NaCl is the structure at room temperature. -Therefore, by referring to NaCl_Info_All.txt, we choose -Data/NaCl_ramp01_10f_200ms_1059.chi as the pattern to compare.

        -
        -
          -

        1. The simplest option that user can use:

          -
          > srr calculatepattern -s s_nacl.xml
          -
          -

          The instrument profile will be searched in the current working directory, -i.e., i_rapdf_idd11.xml

          -
          2. -

        2. User is suggested to specify an instrument file instead:

          -
          > srr calculatepattern -i i_rapdf_idd11_cal.xml -s s_nacl.xml
          -
          -
          3. -

        3. SrRietveld pattern calculation provides more functionalities including

          -
            -
          • compare the calculated pattern to a given data file;
            • -
          -

          Try the complete command as:

          -
          > srr calculatepattern -i i_rapdf_idd11_cal.xml -s s_nacl.xml \
-  -d Data/NaCl_ramp01_10f_200ms_1059.chi \
-  -b backgroundtemp.dat --scale=1.0E-6
          -
          -

          Or:

          -
          > srr calculatepattern --instrument=i_rapdf_idd11_cal.xml --structure=s_nacl.xml \
-  --data=Data/NaCl_ramp01_10f_200ms_1059.chi --background=backgroundtemp.dat \
-  --scale=1.0E-6
          -
          -

          ..image:: figures/f_calculatepattern.png

          -

          The calculated pattern and the real experimental pattern will be plotted against each other. -If the magnitude of them are not close enough, the scale factor can be tuned by inputting -an appropriate value with option –scale.

          -

          The –scale factor should not be large, or the calculated pattern may be overflow.

          -
          4. -
        -
        -
        -
        -

        Refinement on a single measurement srr refine

        -

        It is better to do Rietveld refinement on a single diffraction measurement, -before starting the sequential refinement.

        -

        Because the starting structure model is at room temperature, -we pickup the data set NaCl_ramp01_10f_200ms_1059.chi, -which was measured at room temperature.

        -
          -

        1. Try one of the following commands, which are equivalent to SrRietveld:

          -
          > srr refine -i i_rapdf_idd11_cal.xml -s s_nacl.xml -d Data/NaCl_ramp01_10f_200ms_1059.chi \
-  -b backgrountemp.dat -v refine_1059.proj
-> srr refine --instrument=i_rapdf_idd11_cal.xml --structure=s_nacl.xml \
-  --data=Data/NaCl_ramp01_10f_200ms_1059.chi --background=backgrountemp.dat \
-  --saveas=refine_1059.proj
          -
          -

          The refinement will be launched with the convergence strategy defined in SrRietveld. -And the refinement result will be saved in file refine_1059.proj -The refinement engine in default is Fullprof.

          -

          ..image:: figures/f_refineprocess.png

          -
          2. -

        2. If you do not want to use the automatic background selection provided in SrRietveld, -but rather trust the background points selected by yourself, -you can add one more option -u or --useinputbackground:

          -
          > srr refine -i i_rapdf_idd11_cal.xml -s s_nacl.xml -d Data/NaCl_ramp01_10f_200ms_1059.chi \
-  -b backgrountemp.dat -v refine_1059.proj -u
-> srr refine --instrument=i_rapdf_idd11_cal.xml --structure=s_nacl.xml \
-  --data=Data/NaCl_ramp01_10f_200ms_1059.chi --background=backgrountemp.dat \
-  --saveas=refine_1059.proj --useinputbackground
          -
          -

          The result can be different if you use the background selected by SrRietveld or by yourself.

          -
          3. -

        3. The default refinement backend is FullProf. -You can specify the refinement backend by option --engine (-e). -The supported engine names are

          -
            -
          • Fullprof
            • -
          • GSAS
            • -
          -

          For example, if you want to use GSAS as the refinement backend, the commands can be:

          -
          > srr refine -i i_rapdf_idd11_cal.xml -s s_nacl.xml -d Data/NaCl_ramp01_10f_200ms_1059.chi \
-  -b backgrountemp.dat -v refine_1059.proj -u -e gsas
-> srr refine --instrument=i_rapdf_idd11_cal.xml --structure=s_nacl.xml \
-  --data=Data/NaCl_ramp01_10f_200ms_1059.chi --background=backgrountemp.dat \
-  --saveas=refine_1059.proj --useinputbackground --engine=gsas
          -
          -
          4. -
        -
        -
        -

        Plotting Pattern From Refinement Result srr plotpattern

        -

        Script plotpattern allows the user to view the calculated diffraction pattern, -the observed one and the difference between them.

        -
          -

        1. User can view the diffraction pattern of the final result (last round) as:

          -
          > srr plotpattern --project=refine_1059.proj
-> srr plotpattern -p refine_1059.proj
          -
          -

          ..image:: figures/f_refineplotsingle_best.png

          -
          2. -

        2. User can view the diffraction pattern of at a specific step by option --step, -such as:

          -
          > srr plotpattern -p refine_1059.proj --step=3
-> srr plotpattern --project=refine_1059.proj --step=3
          -
          -
          3. -
        -
        -..image:: figures/f_refineplotsingle_step3.png
        -
          -

        1. The user can also require the patterns to be plot in d-spacing by option ---dspacing. -For example, in this case:

          -
          > srr plotpattern --project=refine_1059.proj --dspacing
          -
          -

          ..image:: figures/f_refineplotsingle_best_dspacing.png

          -
          2. -
        -
        -
        -

        Viewing Refined Parameter Value From Refinement Result srr viewrefineresult

        -

        User can look up a parameter for its value after refinement by command -srr viewrefineresult.

        -
          -

        1. Example 1: read chi^2:

          -
          > srr viewrefineresult -p refine_1059.proj --parameter=chi2`
-> srr viewrefineresult --project=refine_1059.proj --parameter=chi2`
          -
          -

          ..image:: figures/f_refineresult_chi2.png

          -
          2. -

        2. Example 2: read value of Biso of all atoms:

          -
          > srr viewrefineresult -p refine_1059.proj --parameter=biso
-> srr viewrefineresult -project=refine_1059.proj --parameter=biso
          -
          -
          3. -
        -
        -

        These two equivalent commands will give the Biso of both Na and Cl atoms -of the step at which the best convergence is made.

        -

        ..image:: figures/f_refineresult_step3.png

        -
        -
          -

        1. Example 3: Read value of Biso of atom Na:

          -
          > srr viewrefineresult -p refine_1059.proj --parameter=biso --atom=Na
-> srr viewrefineresult -project=refine_1059.proj --parameter=biso --atom=Na
          -
          -
          2. -
        -
        -These will show the parameters’ values with uncertainties. -..image:: figures/f_refineresult_step3.png
        -
          -
        1. If the user is interested to see how one specific parameters changes -along refinement, he/she can add an option --step=all
          2. -
        -
        -
        -

        Saving configuration from saved project file srr saveconfig

        -

        Script saveconfig is multiple purposed to let the user to

        -
          -
        1. extract the information from a refinement project file to a SrRietveld recognizable XML file, -including
            -
          • instrument file
            • -
          • structure file
            • -
          -
          2. -
        2. generate the template of SrRietveld recognizable XML file, including
            -
          • instrument file
            • -
          • structure file
            • -
          • ...
            • -
          -
          3. -
        -

        After a refinement is completed and saved to a SrRietveld project file, -user can export the refined crystal structure to a SrRietveld structure file in XML format, -which can be used as an input for future refinement.

        -

        > srr saveconfig -p refine_1059.proj -s nacl259.xml

        -

        User can also export the refinement strategy file, -such that she/he can modify to the refinement strategy, including sequence of refinement guides, -to refine the structure model again for better convergence.

        -

        srr saveconfig -p refine_1059.proj -r refinestrategy_userdefine.xml

        -

        The user can use any text editor or specific XML editor to modify the XML containing -refinement strategy.

        -

        For example, the user can do further refinement based on the previous refinement result:

        -

        > srr refine -i i_rapdf_idd11_cal.xml -s s_nacl259.xml -d Data/NaCl_ramp01_10f_200ms_1059.chi -b backgrountemp.dat -v refine_1059.proj

        -

        or if with other refinement strategy

        -

        > srr refine -i i_rapdf_idd11_cal.xml -s s_nacl259.xml -d Data/NaCl_ramp01_10f_200ms_1059.chi -b backgrountemp.dat -v refine_1059b.proj -r refinestrategy_userdefine.xml

        -
        -
        -

        Sequential fitting on a series of measurements

        -

        SrRietveld supports sequential refinement on a set of measurements on same material -but in different environment, for example, temperature or pressure.

        -

        In this tutorial, it is a temperature series.

        -

        Before starting the refinement, the user should have

        -
          -
        1. calibrated instrument file: i_rapdf_idd11_cal.xml
          2. -
        2. proposed structure model file: s_nacl.xml, or s_nacl_X.xml that is exported -from the result of previous refinement, for example refine_1059.proj or refine_1059b.proj
          3. -
        3. data-environment parameter value list file: NaCl_Info_All.txt
          4. -
        -

        > srr sequentialfit -i i_radpf_idd11_cal.xml -s s_nacl_02.xml -l Data -f NaCl_Info_All.txt -b backgroundtemp.dat -n T --refinedirection=down --start=295.0 -v seqrefine_nacl.proj

        -

        By this command, SrRietveld will refine all the measurements starting from 295.0 K down to the lowest temperature -measured int the experiment, while all the data are stored in directory Data. -The refinement engine in default is Fullprof.

        -

        With additional option, ---engine=gsas or -e gsas -SrRietveld will use GSAS as refinement engine.

        -

        SrRietveld’s sequential refinement will save the refinement results in several files and directories.

        -

        In the example just shown, SrRietveld will

        -
          -
        1. save all the refinement history and parameter to a single file, seqrefine_nacl.proj. -It will be a large file, but with all information
          2. -
        2. generate a directory named, seqrefine_nacl
          3. -
        3. generate a light-weight XML file in directory seqrefine_nacl. -In this XML file, only the information of chi2, Rwp, and crystal structures are saved.
          4. -
        4. the project files of refinement on every single measurement. -These files will be stored in directory seqrefine_nacl.
          5. -
        -
        -
        -

        View refinement results of sequential refinements

        -

        The user will use a different script: srr viewsequentialrefineresult.py (srvsr) to -look up the parameters from the result of sequential fitting.

        -
          -
        • > srr viewsequentialfitresult -o seqrefine_nacl --parameter=chi2 -p -list chi^2 in all the refinements
          • -
        • > srr viewsequentialfitresult -o seqrefine_nacl --parameter=biso -p -: list Biso of all the atoms in all the refinements
          • -
        • > srr viewsequentialfitresult -o seqrefine_nacl --parameter=biso --atom=Cl -p -: list Biso of atom Cl in all the refinements
          • -
        -

        The option -p is used to plot the result.

        -
        -
        -
        -
        -

        Tutorial On X-ray Diffraction Data

        -

        The purpose of this example is to familiarize the novice user with the -SrRietveld basics.

        -

        The goal is to refine a couple of hundreds of measurements on NaCl -low resolution X-ray powder diffraction data collected at -beamline 11ID-B at at the Advanced Photon Source at Argonne National Laboratory.

        -

        The data files can be

        -
          -
        1. downloaded
          2. -
        2. copied from diffpy.srrietveld package.
          3. -
        -

        Select the directory RAPDF/NaCl

        -

        Inside, you will find

        -
          -
        1. i_rapdf_idd11_cal.xml: the instrument XML file calibrated using Ni data;
          2. -
        2. s_nacl.xml: the structure of NaCl obtained from the literature;
          3. -
        3. backgroundtemp.txt: a background file;
          4. -
        4. NaCl_Inof_All.txt: 2 column file listing the data file name and their corresponding temperature;
          5. -
        5. Directory Data/ containing 321 data sets measured at 321 different temperatures.
          6. -
        -

        More tutorial can be found in ??? -There are some command scripts files with posfix sh.

        -
        -
        - - -
        -
        -
        -
        -
        -
        -

        Navigation

        - -
        -
        - © Copyright 2011, Peng Tian, Wenduo Zhou, Jiwu Liu, Yingrui Shang, Chris Farrow, Pavol Juhas, Emil Bozin, and Simon Billinge. - Last updated on Jun 16, 2011. - Created using Sphinx 0.6.4. -
        - - \ No newline at end of file diff --git a/static_root/doc/srrietveld/reference.html b/static_root/doc/srrietveld/reference.html deleted file mode 100644 index 28e07c4b..00000000 --- a/static_root/doc/srrietveld/reference.html +++ /dev/null @@ -1,351 +0,0 @@ - - - - - - - - - - Reference — SrRietveld 1.0-r6875 documentation - - - - - - - - - - - - -
        -

        Navigation

        - -
        -
        -
        -

        Table Of Contents

        - - -

        Previous topic

        -

        Scripting Interface

        - - -
        -
        - -
        -
        -
        -
        - -
        -

        Reference

        -
        -

        The Main Window Layout

        -

        The SrRietveld GUI window in start up is shown in the figure below. At the top of the window is the menu bar, which contains drop-down menus with various functions. Below the menu bar is the tool bar, which contains icons for commonly used operations such as creating a new project, opening an existing project, saving a project, executing a refinement, stopping a refinement and making a quick plot. Below the tool bar are three panels. The top left pane is the Experiments panel, the top right is the Current Actions panel, and the bottom is the Output panel.

        -
        -
        -_images/SrRietveld1.png -

        -Layout of SrRietveld main window

        The Experiments panel is used for navigation. The Jobs panel shows the list of jobs and their status in the current project. The right panel has multiple context-sensitive uses. Through it, the user sets up the refinement, configures the fit attributes, sets the fit constraints, reviews the fit settings, displays fitting results. The refinement progress is displayed in the Output panel. All panels except the right panel are dockable windows that can be dragged across the screen, resized, and arranged to accommodate the individual visual needs of the user. Finally, important context sensitive functions (discussed later) are also available through mouse operations such as right-clicking.

        -

        The Jobs, Experiments, and Output panes can be undocked or moved to other positions of main window by drag and drop. Users can also close or reopen the Jobs and Output pane by click on the x icon on their title bars, or go to the Layout menu on the menu bar. If users would like to restore the default layout of the main window, go to the menu Layout->Restore default layout.

        -
        -
        -

        The Experiments Panel

        -
        -

        General Layout

        -
        -
        -_images/experiment_panel.jpg -

        -The Experiments panel

        When a user clicks on a category in the Experiments panel, the right panel will be updated with the parameters in that category. We will now go through all of the categories in the Experiments panel.

        -

        All variables contains all of the parameters; it is further broken up into three categories. Phase contains the parameters related to the phase information, such as phase names, lattice parameters in different phases, and atoms information in each phase; Pattern contains information on observed / calculated patterns, which may include the original data file, the background type and coefficients; and Profile contains peak profile information.

        -

        If we click Strategy, we see a strategy editor in the right panel. The refinement strategy and strategy file will be introduced in Refinement Strategy .

        -

        User defined tag contains the customized tags other than the predefined. The user can define their own tag and categorize variables in their own way.

        -
        -
        -

        User Defined Tags

        -
        -
        -_images/tree_context_menu.png -

        -The context menu of user definable tags on Experiments panel

        To define a customized tag, right click on the tag User defined or one of its child tags, a context menu will pop up, click on Add, a user defined tag edit dialog will pop up. All the variables are listed on the left list of the dialog. The user can click the variables and move it to the right list to contain it in this user defined tag. The tag name can also be edited in the input box on the top of the dialog.

        -
        -
        -_images/edit_user_defined.png -

        -The user defined tag edit dialog

        -

        Note

        -

        It is possible to categorize the parameters from different refinement under the same user defined tag, only when the refinements have the same dimensions (same number of fits). This confine is due to the constraint set by the underlying data structure.

        -
        -
        -
        -
        -

        The Job Panel

        -
        -
        -_images/job_treectrl.png -

        -The Job panel

        The job panel shows the list of the jobs in the current project. Once a user added a job to the project, it will be shown to the end of the job list in the panel. To add a job, user has to select a refinement in the Experiment, and select the datasets in the grid to the right panel, which will be refined in the job. Then click the Refinement->Add job. User can also add the job by click on the button in the tool bar.

        -

        The icons in front of the jobs listed in the panel shows the status of the job:

        -
        square - submitted, ready to run
-parallel red bars - paused, indicates user stopped the refinement
-red cross - error, error occurred during refinement, the job is not completed
-green check mark - finished, job is completed alright
        -
        -

        When users start the refinement, SrRietveld will start to run the jobs in the list, from the first submitted job from the top of the list.

        -
        -

        Note

        -

        If no datasets are selected in the grid panel to the right, all datasets in the selected refinement will be added to the job.

        -
        -

        In the figure above, it can be seen that users can manage the job from the context menu on the job panel. Corresponding functions can also be accessed in the Refinement menu on the menu bar.

        -
        -
        -

        The Work Flow in SrRietveld

        -

        SrRietveld organizes work flow in the following categories:

        -
        -
          -
        • -
          project
          -
            -
          • -
            refinement
            -
              -
            • fit
              • -
            -
            -
            -
            • -
          -
          -
          -
          • -
        -
        -

        Each time you run SrRietveld you are working with a single project. You can save and load projects but only one project is open at a time and everything you see in the GUI is associated with that project. The structure of the project is illustrated in the tree control view on the left panel of GUI. Within the projects are refinements and fits. Each fit is a single refinement consisting of one or more phases. A fit can at the same time contain one or more datasets. An refinement is a series of fits that are controlled by the same template EXP or PCR file. For example, it could be a sequential set of fits on many data-sets collected as a function of temperature, or it could be multiple refinements carried out on the same dataset using the same model for some reason such as bootstrap error analysis.

        -
        -
        -

        Refinement Strategy

        -
        -

        What is Refinement Strategy?

        -

        SrRietveld uses strategies to automate refinements in place of the extensive human interaction necessary with GSAS or FullProf. A strategy defines a series of actions that are applied during the refinement. At each step, refinement parameters could be enabled and disabled. Additionally, constraints can be put on the parameters. This enables the user to set up an automatic refinement process.

        -
        -

        Note

        -

        If the strategy is disabled, all the parameters ever turned on in the strategy steps will be turned on in the one step refinement. This will, in some cases, cause divergence.

        -
        -

        Strategy means the order of the refinement on selected parameters. It is essentially the controller of the refinement. In the SrRietveld GUI, one strategy editor is designed to show the strategy that SrRietveld will use (Figure). Following is what it looks like:

        -
        -
        -

        The Strategy Panel

        -
        -
        -_images/SrRietveld2.png -

        -The view of strategy editor

        There are two parts in the strategy panel. As can be seen in the above figure, the top part shows the list of refinable parameters that user can select to add at selected row (the refinables), while the bottom is a list view of actions will be executed for each step. In the strategy action list view, there are two check boxes which enables the user to skip the refinement strategies during refinement to save time, and automatically turn the strategy on if the refinement diverges. As can be seen in the above figure, if the Enable strategy is checked, the strategy will be enabled and the actions in the strategy list will be applied to each refinement. Other wise, if the Enable strategy is not checked, the strategy steps will be skipped by default. But if the Enable strategy when diverge is checked, the diverged refinement will be rerun with the strategy turned on.

        -
        -

        Note

        -

        When the Enable strategy is not checked and the Enable strategy when diverge is checked, if the refinement on one dataset diverges, SrRietveld will automatically rerun the refinement on that dataset with the strategy turned on. If the refinement still diverges, the software will continue on next dataset and the previous one will be marked as diverged.

        -
        -
        -
        -

        Work with Strategy in SrRietveld

        -

        In the grid views, it can be seen in the column label that if a parameter is turned on in one of the strategy steps, the parameter name will be prefixed with a @ mark. To edit the parameter list in strategy steps, user can select and right click the parameter column label, and hover mouse over Turn on parameters submenu, the strategy submenu list will show. The including step will be ticked in the list. User can add or remove the selected parameter from a step by clicking on the menu item.

        -
        -

        Note

        -

        User can also go to Refinement->Turn on parameter for the same list. If the parameter is not a refinable, the Turn on parameters submenu will be disabled.

        -

        Enlarge

        -
        -_images/turn-on-parameters.png -

        -The sub menu to turn on and off parameters in strategy steps

        It can be seen that when a new refinement is created, a default strategy will be automatically loaded. Users can use these default strategy to handle many common refinement jobs. On the other hand, any changes made to the strategy will be saved to the strategy, therefore will be loaded next time users open and run refinement in the same project.

        -
        -

        Note

        -

        The constraint window is supposed to show the constraint information of the refinement, though the functionality will be completed in the next release. The constraint information in the setup files (EXP, PCR files) will be directly passed, users can not view or edit the constraint information within SrRietveld for now.

        -
        -
        -
        -_images/SrRietveld3.png -

        -Real-time refinement with strategy

        In SrRietveld strategy, when the GSAS refinement engine is used, the background function coefficients and lattice parameters (a, b, c, alpha, beta, and gamma) should be turned on / off as a combination, while in FullProf engine these parameters can be flagged separately.

        -
        -
        -

        Export and Load Strategy

        -

        Users can export the current strategy into a text file in local disk (Menu->Export->Export strategy). This text file can be loaded into another experiment later (Menu->Load->Load strategy). It is worth to mention that the strategy files from a different engine refinement may not be used.

        -
        -
        -
        -

        Data Files

        -

        SrRietveld takes data file in formats of .chi, .dat, .xye, .gsa, .gda, .fxye, and other standard two-column/three-column histogram data file formats. For data file in .chi, .dat, .txt, and .xye formats in GSAS refinements, the data files will be converted to .gsa file format. On the other hand, in FullProf refinements, the data files in .chi, .gsa, .gda, fxye, and .raw will be converted to .dat format, though to convert from .gsa, .gda, .fxye, and .raw, GSAS installation and .EXP setup file will be needed.

        -
        -
        The data list file contains the information of the environment parameter list (such as the temperature) and the corresponding data file paths. In SrRietveld, this file is a .info file.
        -
          -
        • The .info data list file is a multi-column data file, with one column being the environment parameter list, the other column denotes the paths of the data files. The number of columns is determined by the number of banks in the histogram file. Though in .gsa file, one data file contains multi-bank histogram information, there could be only one data file column for multiple banks.
          • -
        • The first line of the data file must be the labels of the data columns.
          • -
        • The label for the environment parameter list can be any string (without any space). The label of the data file paths columns can be either datafile (only one data file for each fit) or bank1 bank2 bank3 ... (for multiple data files for each fit)
          • -
        • The .info file can also be a CSV file (Comma Separated Values)
          • -
        • No space in each label string, since that is confusing in terms of the number of columns.
          • -
        -
        -
        -

        There is one .info file in the example data folder, which reads as follows:

        -
        T   Datafile
-155.2        NaCl_ramp01_10f_200ms_0969.chi
-156.2        NaCl_ramp01_10f_200ms_0970.chi
-157.4        NaCl_ramp01_10f_200ms_0971.chi
-158.4        NaCl_ramp01_10f_200ms_0972.chi
-159.7        NaCl_ramp01_10f_200ms_0973.chi
-160.8        NaCl_ramp01_10f_200ms_0974.chi
-161.8        NaCl_ramp01_10f_200ms_0975.chi
-....
        -
        -

        For a multi-bank case, the .info file can be read as:

        -
        T   bank1   bank2   bank3
-728 728.gsa 728.gsa 728.gsa
-729 729.gsa 729.gsa 729.gsa
-835 835.gsa 835.gsa 835.gsa
-897 897.gsa 897.gsa 897.gsa
-898 898.gsa 898.gsa 898.gsa
-899 899.gsa 899.gsa 899.gsa
-900 900.gsa 900.gsa 900.gsa
-901 901.gsa 901.gsa 901.gsa
-902 902.gsa 902.gsa 902.gsa
-903 903.gsa 903.gsa 903.gsa
-904 904.gsa 904.gsa 904.gsa
-905 905.gsa 905.gsa 905.gsa
-....
        -
        -
        -

        Note

        -

        Please make sure the data files listed in the .info file do exist. SrRietveld will check the existence of the data files before refinement starts.

        -
        -
        -
        -

        Plot Window

        -

        To plot the data in SrRietveld, one can click on the column title of the data which will be plotted, and click on the plot button on the toolbar. A plot window will then show up. As can be seen in the screenshot (Figure).

        -
        -
        -_images/plot_back.jpg -

        -The plot of one of the background coefficients in plot window.

        It can be seen that an plot window with extended functionality is implemented. We plotted one of the background coefficients against the changing environmental variable, which is temperature in our case. In addition to the main plot window, as shown above, SrRietveld also implemented a console to the bottom of the plot window, from where the user will have full control over the data and the plot view. The console is essentially takes python command.

        -

        To the left, there are two tabs - Curves List panel and Dimension panel. The Curves List panel is listing all curves on the plot area and provide tools to modify the curves style. In the Dimension panel, which is shown in the figure above, there are three sub-panels. Users can select the available X and Y axis listed in these panels. The Y axis selection is only available when the data is 3D or above, to say, there are two changing environmental variables.

        -

        The third sub-panel is a Stack panel. The items listed in the Stack panel can be a second variable affecting the curves in the current plot area. When one of these items is selected, multiple curves will show in the plot area, with each curve representing a data point of the Stack variable. An example can be seen in the screenshot (Figure).

        -
        -
        -_images/plot_stack.jpg -

        -The plot of one of the background coefficients in plot window.

        In this example, the Order of this background coefficient is listed in the Stack panel, which represents the results from different refinement steps. The refinement steps are defined in Strategy editor. As aforementioned, according to the refinement strategy used in the Tutorial, there are 7 refinement steps in total. The background coefficients are turned on (started to be refined) from the second step, thus there are 5 steps which will include the background coefficients as results. The stack view, different curves represents this background coefficient in different steps in the refinement, as shown in the legend, and changing with time, as indicated in X-axis.

        -
        -

        Plot the Pattern on Different Environment Parameters

        -

        When plotting the pattern, user may want to view the pattern for a certain temperature. The plot window in SrRietveld enables the users to navigate in multidimensional data.

        -

        To select the pattern for a certain temperature, the user has to first select the experiment node on the tree control panel on the left of the main window, and click on the ‘Plot’ icon in the toolbar. The plot window will show with the first pattern plotted. Click on the ‘Show’ icon on the toolbar, then a navigation panel will show to the left of the plot window. Select the ‘Curve’ tab, the Data index tree control panel will be on the lower half of the ‘Curve’ tab panel. The changing environmental variables will be listed in the window, which is ‘T’ in this example. Double click on the ‘T’ node then a list of all temperatures in the sequential refinement will be expanded. User then can select the pattern on a specific temperature by double clicking on the temperature node on that list, as can be seen in the Figure below.

        -
        -
        -_images/plot_select_temperature.png -

        -Plot the pattern at a certain temperature in sequential refinement

        -
        -
        -

        Run SrRietveld from Command line

        -

        Users can run SrRietveld from command line. Currently only a few options are available. But more options will be added in later releases of SrRietveld.

        -

        After the bin folder containing SrRietveld application interface is added in the system PATH environment variable, user can run SrRietveld from command line from any folder:

        -
        srrietveld
-
        -
        -

        To list the help information, one can type in:

        -
        srrietveld --help
-
        -
        -

        And a brief usage information and option summary would be displayed in -the terminal

        -
        SrRietveld - perform and analyse a series of Rietveld refinements.
-Usage:  srrietveld [options] prototype.EXP
-        srrietveld [options] prototype.PCR
-to start a new project based on prototype GSAS or FullProf refinement or
-        srrietveld project.srr
-to open an existing SrRietveld project.
-
-Options:
-    -h, --help      display this help and exit
-    -v, --version   show program version and exit
-    -d, --debug     debug mode - temporary files are not removed, standard
-                    output is not captured to the GUI window.
        -
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        Navigation

        - -
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        - © Copyright 2013, Peng Tian, Wenduo Zhou, Jiwu Liu, Yingrui Shang, Chris Farrow, Pavol Juhas, Emil Bozin, and Simon Billinge. - Last updated on Jan 11, 2013. - Created using Sphinx 1.1.3. -
        - - \ No newline at end of file diff --git a/static_root/doc/srrietveld/scripting_interface.html b/static_root/doc/srrietveld/scripting_interface.html deleted file mode 100644 index 550f8eeb..00000000 --- a/static_root/doc/srrietveld/scripting_interface.html +++ /dev/null @@ -1,307 +0,0 @@ - - - - - - - - - - Scripting Interface — SrRietveld 1.0-r6875 documentation - - - - - - - - - - - - - -
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        Tutorial and Example

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        Reference

        - - -
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        Scripting Interface

        -

        This part contains the introduction to the scripting interface of SrRietveld. The full API documents for SrRietveld scripts can be found in -here.

        -

        Currently the scripting interface is mostly useful to analyze a completed project. The result data can be easily retrieved and plotted. Also, the data objects in the project can be converted to a data list, which can be used in further analysis, or other modules.

        -
        -

        Structure of the Project Data File

        -

        After the all refinements in a SrRietveld project are complete, the data are saved into a project file, which is actually an HDF5 binary data file. With the scripting interface, users can walk through the structure and obtain the certain result data.

        -

        The data are stored in Datasets, a Dataset is a Python wrapper class over the HDF5 data node. The Dataset usually contains a list of values, which represent the list of single refinement in the project. The Dataset has an interface similar to a list in Python. For example, in the example project file NaCl.srr, user can access the chi2 value of the GSAS refinement on the first single run, as bellow:

        -
        >>>from diffpy.srrietveld.project import Project
->>>proj = Project('NaCl.srr')
->>>gsas_refinement = proj.listRefinements()[0]
->>>chi2 = gsas_refinement.getChi2()
->>>chi2
-<diffpy.refinementdata.hdf5.dataset.Dataset object at 0x365a110>
->>>chi2[0]
-2.5699999999999998
-
        -
        -

        The Datasets are organized in different Objects. The Object in the project can contain Datasets or other Objects. The structure of a project is illustrated in the following scheme

        -
        -
        -_images/project_structure.png -

        -The scheme for project data structure

          -
        • Datasets are listed under Objects
          • -
        • Objects may contain other lower level Objects as shown in the figure
          • -
        • A Project may contain multiple Refinements. A Refinement contains information defines a refinement job.
          • -
        • In the scripting interface, a Refinement object contains three categories of accessible Objects: Phases, Patterns, and Profiles.
          • -
        • A Phase object contains the lattice parameters and defines a phase structure. It also contains the list of Atoms.
          • -
        • A Pattern object contains the histogram information, such as the Tmin, Tmax, and the Background coefficients. A Pattern object also contains the ExcludedRegion objects.
          • -
        • A Profile object contains the peak profile parameters. Containing Datasets include the number of coefficients, the profile function type, and the list of the profile function coefficients.
          • -
        -
        -
        -

        Access Functions

        -

        The scripting interface provides convenient access functions to retrieve the Datasets and Objects saved in a Project file. The SrRietveld scripting interface API document contains detailed instructions on these access functions. Some commonly used functions are summarized as follows.

        -
        -

        Create a Project

        -

        The API doc for Project class can be found here.

        -

        To create a Project instance, import and initialize the Project class:

        -
        >>>from diffpy.srrietveld.project import Project
->>>proj = Project('NaCl.srr')
-
        -
        -
        -
        -

        Investigate into the Refinement

        -

        The API doc for Refinement class can be found here.

        -

        The Refinement objects can be listed under Project:

        -
        >>>proj.listRefinements()
-[<diffpy.srrietveld.refinement.Refinement object at 0x2e05a90>, <diffpy.srrietveld.refinement.Refinement object at 0x2e05dd0>]
-
        -
        -

        To list the names and get a specific refinement by its name:

        -
        >>>proj.listRefinementNames()
-['NACL_EXP', 'NaCl_pcr']
->>>gsas_refinement = proj.getRefinementByName('NACL_EXP')
-<diffpy.srrietveld.refinement.Refinement object at 0x2e05a90>
-
        -
        -

        Now a GSAS type refinement object is obtained from the project. Users can get the data by its access functions:

        -
        >>>gsas_refinement.getName()
-'NACL_EXP'
->>>gsas.refinement.getNumOfCycles()
-<diffpy.refinementdata.hdf5.dataset.Dataset object at 0x365a390>
->>>chi2 = gsas_refinement.getChi2()
->>>chi2[300]
-4.5919999999999996
-
        -
        -

        Similarly, the Phase, Pattern, and Profile objects can be listed under Refinement:

        -
        >>>gsas_refinement.listPhases()
-[<diffpy.srrietveld.phase.Phase object at 0x2e20190>]
->>>gsas_refinement.listPhaseNames()
-['NaCl']
->>>gsas_refinement.listPatterns()
-[<diffpy.srrietveld.pattern.Pattern object at 0x2e108d0>]
->>>gsas_refinement.listProfiles()
-[<diffpy.srrietveld.profile.Profile object at 0x2e10310>]
-
        -
        -
        -
        -

        Phase Structure

        -

        The API doc for Phase class can be found here.

        -

        The Phase object contains the lattice parameters and the Atom objects:

        -
        >>>phase = gsas_refinement.getPhaseByName('NaCl')
->>>phase.getLatticeA()
-<diffpy.refinementdata.hdf5.dataset.Dataset object at 0x365a550>
->>>max(phase.getLatticeA())
-5.6840650000000004
-
        -
        -
        -

        Note

        -

        Dataset objects have the *[]* operators reloaded and a generic interface similar to the built in list type. The values in Dataset represent the values in the series of single refinement. And this Dataset object can be directly passed into functions which accept a list.

        -
        -
        -
        -

        Atoms in the Phase

        -

        The API doc for Atom class can be found here.

        -

        The Atom objects are listed under Phase:

        -
        >>>phase.listAtomNames()
-['NA1', 'CL2']
->>>na = phase.getAtomByName('NA1')
->>>na.getUiso()
-<diffpy.refinementdata.hdf5.dataset.Dataset object at 0x365a750>
->>>na.getBiso()
-<diffpy.refinementdata.hdf5.dataset.Dataset object at 0x365a810>
-
        -
        -
        -

        Note

        -

        In GSAS refinement, the Biso values are calculated from Uiso values and stored in the project file. Users can directly access to the Biso values under Atom. Similarly in FullProf, the Uiso values are calculated from Biso values.

        -
        -
        -
        -

        Pattern Objects

        -

        The API doc for Pattern class can be found here. -The API doc for ExcludedRegion class can be found here.

        -

        The Pattern object contains the histogram data and the background coefficients:

        -
        >>>gsas_refinement.listPatterns()
-[<diffpy.srrietveld.pattern.Pattern object at 0x2e108d0>]
->>>pattern = gsas_refinement.listPatterns()[0]
->>>pattern.getBackgroundCoefficients()[319]
-array([ 1941.42,  1773.07,  1818.96,  1640.05,  1365.27,  1141.02])
->>>pattern.listExcludedRegions()[0].getEnd()[319]
-1000.0
-
        -
        -
        -

        Note

        -

        The getBackgroundCoefficients function will return a multi-dimension arrays. The first dimension is the length of single refinements. The second dimension is the number of the coefficients, which can be obtained from the function getNumOfBackgroundCoefficients under Pattern object.

        -
        -
        -
        -

        Peak Profiles

        -

        The API doc for Profile class can be found here.

        -

        The Profile object contains the profile function applied to the pattern:

        -
        >>>profile = gsas_refinement.listProfiles()[0]
->>>profile.getProfileType()
-2
->>>profile.listCoefficientNames()
-['GU', 'GV', 'GW', 'LX', 'LY', 'trns', 'asym', 'shft', 'GP', 'stec', 'ptec', 'sfec', 'L11', 'L22', 'L33', 'L12', 'L13', 'L23']
-
        -
        -
        -

        Note

        -

        The scripts have same interfaces despite of differences in engine types. Though the returned values may have different meanings. For example, the profile and background function type identification numbers are different in GSAS and FullProf. Users have to refer to the manuals for details.

        -
        -
        -
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        Data Visualization and Post-analysis

        -
        -

        Plot the Dataset

        -

        Users can plot the Dataset directly by using the plot member function under Project (API doc <http://www.diffpy.org/doc/srrietveld/api/diffpy.srrietveld.project.Project-class.html#plot>_):

        -
        >>>a = phase.getLatticeA()
->>>b = phase.getLatticeB()
->>>temperature = gsas_refinement.get('T')
->>>from diffpy.refinementdata.plot import backend
->>>backend.use('wx')
->>>proj.plot([a, b], temperature)
-
        -
        -

        Also, users can convert the Dataset object into list, and plot the data with other visualization packages such as matplotlib.

        -
        -
        -

        Post-analysis

        -

        The Dataset objects can be easily converted to list or numpy.array objects, which can be readily imported to other models:

        -
        >>>chi2 = gsas_refinement.getChi2()
->>>chi2_list = list(chi2)
->>>from numpy import array
->>>chi2_array = array(chi2_list)
-
        -
        -
        -
        -
        -

        A Comprehensive Example

        -

        An example is introduced below to show the usage of the scripting interface. The NaCl.srr project data file is read into Python. The lattice parameter a values from GSAS and FullProf engines are plotted and compared. The Uiso values of Na, Cl atoms, from both GSAS and FullProf engines are plotted. Also, the Uiso values in temperature series are fitted with Debye model. The whole script is in the example folder, and also can be found in the -SVN repository.

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        - © Copyright 2013, Peng Tian, Wenduo Zhou, Jiwu Liu, Yingrui Shang, Chris Farrow, Pavol Juhas, Emil Bozin, and Simon Billinge. - Last updated on Jan 11, 2013. - Created using Sphinx 1.1.3. -
        - - \ No newline at end of file diff --git a/static_root/doc/srrietveld/searchindex.js b/static_root/doc/srrietveld/searchindex.js deleted file mode 100644 index d9b1dcdb..00000000 --- a/static_root/doc/srrietveld/searchindex.js +++ /dev/null @@ -1 +0,0 @@ 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to SrRietveld documentation!","Reference","Introduction","Scripting Interface","Installation","Tutorial and Example"],objnames:{},filenames:["index","reference","intro","scripting_interface","install","tutorial"]}) \ No newline at end of file diff --git a/static_root/doc/srrietveld/srrietveld.pdf b/static_root/doc/srrietveld/srrietveld.pdf deleted file mode 100644 index 2b8d3396..00000000 Binary files a/static_root/doc/srrietveld/srrietveld.pdf and /dev/null differ diff --git a/static_root/doc/srrietveld/tutorial.html b/static_root/doc/srrietveld/tutorial.html deleted file mode 100644 index b89e4f41..00000000 --- a/static_root/doc/srrietveld/tutorial.html +++ /dev/null @@ -1,523 +0,0 @@ - - - - - - - - - - Tutorial and Example — SrRietveld 1.0-r6875 documentation - - - - - - - - - - - - - -
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        Navigation

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        Table Of Contents

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        Previous topic

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        Installation

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        Next topic

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        Scripting Interface

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        Tutorial and Example

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        This tutorial contains a guide for users to complete an example Rietveld parametric refinement with SrRietveld, as well as other major functionalities in SrRietveld software.

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        Example

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        The data files for this example can be downloaded from here.

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        Experiment Data

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        Sample: NaCl (sodium chloride) from Puratronic® (99.999%, 5N grade), contained in a 1 mm diameter Kapton tube mounted perpendicular to the synchrotron beam.

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        Beamline: 11-ID-B at Advanced Photon Source (APS) at Argonne National Laboratory (ANL). The beam energy is 58keV and x-ray wavelength of 0.21281Å.

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        Temperature ramping: The temperature was ramped continuously from 155.2 K to 500 K at a speed of 3 K/min.

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        Instruments: The sample was cooled using a Oxford cryostream cooler. The data were collected on a 2D Perkin-Elmer amorphous silicon detector mounted 128.6mm behind the sample and perpendicular to the beam.

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        Create the Example Folder

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        We recommend the users to create a new working directory and work on this example within this new folder.

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        For Windows Users

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        Create a new folder on your hard drive. And put the downloaded example package into the newly created folder. Unzip the package.

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        For Linux/Unix Users

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        Linux/Unix users may need to type in commands in a terminal. Examples of commands that need to be typed on the command line are shown boxed in bold like:

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        this
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        It should be possible to cut and paste them from the documentation into the command prompt to save you time. Text in angle brackets should be replaced with the value relevant to your case.

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        Begin by creating your working directory:

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        mkdir path/to/my/working/directory
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        The downloaded package is in the form of a zipped archive file. Save the zip file in your working directory. It should be possible to do this from the browser by right clicking on the link and browsing to the right directory. Go to the working directory:

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        cd path/to/my/working/directory
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        and unpack the zip file:

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        unzip srrietveld-examples.zip
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        This should create a directory tree with all of the example data: NaCl_RAPDF_example

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        Note

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        After the zip file just downloaded is extracted, the contents of the NaCl_RAPDF_example folder can be read as following,

        -

        Data - a directory that contains all the raw data in CHI format files

        -

        NaCl.srr - a HDF5 format binary project file contains the refinement setup and results of this example. This example project contains two experiments, one is refined with GSAS as the refinement engine and the other is refined with FullProf. This is created by SrRietveld and can, in turn, be read by SrRietveld. You will create this file when you do the tutorial. This is provided by way of a solution to the problem. You can check your project file against this one.

        -

        NaCl.EXP - the refinement setup file for the GSAS engine. This file can be created or edited using programs such as EXPGUI.

        -

        NaCl.pcr - the refinement setup file for the FullProf engine. This file can be created or edited using programs such as WinPLOTR.

        -
        -
        -
        -
        -

        Start SrRietveld GUI

        -

        Once the SrRietveld program is properly setup and the example files are downloaded, the user can start SrRietveld to run the examples. On Windows, SrRietveld can be started by clicking the quick link icon on the desktop or in program list.

        -

        To start SrRietveld in Linux/Unix, type on the command line:

        -
        srrietveld
-
        -
        -

        If the system cannot find the srrietveld command, the system PATH environment variable may not be set up correctly. Please go back to the installation section of SrRietveld, and check if the script path is added to the system PATH variable.

        -
        -

        Note

        -

        SrRietveld is a cross platform application, its Graphical User Interface looks and behaves the same on different operating systems. Details about the GUI layout can be found here.

        -
        -
        -
        -_images/SrRietveld1.png -

        -Layout of the SrRietveld main window. There are three main panels. On the left is -the “Experiments” panel, the role of the main panel on the right is context sensitive, it -changes depending on what is selected in the experiments panel, but it will be used for editing and -controlling refinements, and viewing numerical results. The bottom panel is the “Output” panel that -shows outputs from SrRietveld engines as they run. At the top is a toolbar and a number of drop-down lists. -The layout of the GUI can be reconfigured by sliding boundaries between panels. Panels can also be undocked -and redocked in a different arrangement by grabbing the top of the panel by holding down the left -mouse button and dragging the mouse.

        -
        -

        Creating a Simple Project Using a Preexisting EXP/PCR File

        -

        Each time you open SrRietveld you are working on a single project. You can open an existing project or -start a new project. Here we will start a new project by clicking on File->New project. When SrRietveld -starts, a new empty project will be loaded in the work place automatically.

        -

        Within a project we can create refinements, which may contain a series of related fit s. -Each fit may contain one or more phases and one or more histogram files. In conventional Rietveld refinement -jobs, users usually work on one fit each refinement.

        -

        SrRietveld uses an EXP (for GSAS refinement) or PCR (for FullProf refinement) as template to create a -refinement. The same settings, including the refinement strategy (see here) -will be applied to all fit s in a refinement.

        -

        In the current example we have a series of 320 NaCl data-sets collected as a function of temperature. We -are going to create an project, which contains a GSAS refinement and FullProf refinement. The refinements -will be sequentially refined with corresponding engine.

        -

        To add a new refinement to the project, one can click on the Add new refinement icon on the toolbar, or -File->New fit... on the menu bar, or right click on an empty area on the experiments panel.

        -

        A file dialog will pop up. Then navigate in the file dialog to the NaCl example folder and select NaCl.EXP.

        -
        -

        Note

        -

        It is possible to override this step and create a new project with a new experiment directly by typing at the command line:

        -
        srrietveld NaCl.EXP
        -
        -

        or

        -
        srrietveld NaCl.pcr
        -
        -

        This will launch SrRietveld GUI with the experiment pre-created provided the NaCl.EXP file is present in the current directory.

        -

        To learn how to run SrRietveld from command line, please see the instructions here.

        -
        -
        -

        Note

        -

        Currently, users need to use GSAS (EXPGUI) or FullProf (WinPLOTR) to create the EXP / PCR setup files to create a new experiment in SrRietveld. Users can change the initial values of the refinement. But can not alter the number of phases or number of atoms specified in the EXP/PCR files.

        -
        -
        -
        -

        The Setup Panels and Strategy Editor

        -

        After the EXP or PCR file has been loaded you will see a list of icons in the Experiments panel (left panel). -The refinement parameters are categorized into different folders. (Figure). Users can -navigate through the icons, the values of contained parameters will show to the right panel.

        -
        -

        NaCl_EXP – the name of the refinement

        -
        -

        All variables – all refinement setting parameters

        -

        Phase – The phase information, such as the lattice parameters, phase name, atoms, etc.

        -

        Patterns – The histogram file information, such as the data file path, instrument file path, incident spectrum data file, etc.

        -

        Profile – The setup parameter for the profile, such as the scale factor, zero shift, etc.

        -
        -

        Strategy – The strategy setup interface. (see here)

        -

        User defined – user created category.

        -
        -

        Right click on the icons will trigger a context menu, which provides additional functionalities.

        -
        -

        Note

        -

        User can define their own category icon under the User defined. Just right click on the User defined icon, click Add child

        -
        -
        -
        -

        Load Data

        -

        Next the data will be loaded into the refinement. -First, select the refinement on the experiment panel (left panel), the click the Load the data to a refinement -icon. A file dialog will open. After the user selected the data file or data list information file from the file -dialog, the

        -
        -

        Note

        -

        User can also use the Ctrl+L shortcut or by clicking Load->Data to open the dialog.

        -
        -

        There are two schemes to load a sequence of data into the refinement:

        -
          -
        • User can directly select the data files to load. An index will be automatically generated for the list.
          • -
        • To associate the list of data files with the environment variables, user can prepare a INFO file, which will -contain the list of environment variable values and the relative paths to the INFO file. User can choose -this INFO file and SrRietveld will load the data file specified.
          • -
        -

        In this example, select the NaCl_All.info file in the directory NaCl_RAPDF_example/Data/, -The list of data files and the temperature will be listed in a dialog before load into the -refinement (Figure).

        -
        -
        -_images/load_data.png -

        -The load data dialogue box. This is obtained by making an experiment active by selecting the -main experiment tab (in this case it is called “NaCl”), then clicking on the Load drop-down menu and -selecting data. We have browsed to the directory containing the data and selected the NaCl.info file -that contains a list of data-files and the temperature at which the data were measured. In this figure all -the files are shown selected, so when “replace” button is clicked these datasets will be loaded into this -experiment (replacing any data-files that were associated with the experiment). Only the selected files will -be loaded.

        -

        Note

        -

        By default, all the files in the .info are selected but this can be changed using normal selection methods -(select a single file, select multiples files by holding down Ctrl button and clicking files, or select -ranges of files by holding down shift and clicking the file at each end of the range).

        -
        -

        The NaCl_All.info file is a multi column text file, which contains the datafile names and -the corresponding temperature on which the data were collected. After the sequential refinement -data are loaded, select Pattern in the Experiments panel. We see that it contains a row of -meta data for each loaded dataset (Figure). The names of the files that -correspond to each row are in the Datafile column. Similarly, the Instrumentfile contains -the instrument file path, and the MFIL column contains the incident spectrum data file path (for GSAS refinements).

        -

        Details about the data file list file (.info file) format can be found here.

        -
        -

        Note

        -

        In the case of multi-bank data, data file for each bank has to be specified. If a data file for a bank is missing, -the data file path from the previous bank will be copied, otherwise, if more data files are listed than the number -of the banks, the extra data file will be ignored.

        -
        -
        -
        -_images/pattern_node.png -

        -The Pattern setup panel. We can see which data-files, or diffraction “patterns”, are associated with -the experiment by clicking on the pattern node in the experiment and looking in the main panel. -Also apparent in this panel are other parameters in the fits that are associated with the pattern such as -background parameters and the instrument parameter file that will be used with the refinement.

        -
        -

        Refinement Strategy

        -
        -

        Note

        -

        For more details on strategy in SrRietveld, please see here.

        -
        -

        Now we have loaded a EXP file and created an “refinement” and we have associated -a series of data-sets to this experiment. We are now ready to set up the refinement strategy. -SrRietveld uses strategies to automate refinements in place of the extensive human interaction -necessary with GSAS or FullProf.

        -

        The strategy is a sequence of refinements on one data set. To obtain convergence, usually fewer parameters will be turned on at the beginning steps of the strategy and more parameters will be turned on at the following steps. At the last step all parameters to be refined will be turned on. This process can improve the convergence of the refinement on one data set when the starting value is not close enough to the results. While in most cases, the user will have a refinement setup file with good results ready to establish a project in SrRietveld, the strategy steps will be turned off by default. The user can also let the program to automatically turn on the strategy steps when the refinement diverges on one dataset. Therefore when the refinement diverges, the software will rerun the refinement with all strategy steps turned on on the same dataset. If the second trial fails again, the software will mark the bad dataset and continue to the next.

        -

        The turned on parameter will show a prefix @ in its label. To add a parameter to a step of strategy, user can select that column, and right click on the column label, hover the mouse over Turn on parameters submenu, user can remove or add this parameter to the listed steps.

        -

        Select the Strategy icon on the NaCl experiment in the Experiments panel. -The SrRietveld default strategy can be seen in the strategy panel to the right. We will use the default strategy so there is no need to edit it. Users can edit the strategy in the strategy editor panel. The user defined strategy can also be exported to local disk as a text file, which can be loaded into another experiment with same refinement engine.

        -
        -

        Note

        -

        SrRietveld sets up a default strategy for each newly created experiment. For details of -how to edit the strategy, please go here

        -
        -
        -
        -

        Real Time Plotting

        -

        Now we will open the real time plot windows so we can follow the refinement. When the refinement starts, -all the fits in the experiment will be carried out. We can choose to follow any refined parameter, or -the goodness-of-fit R-factors, as a function of the fit number or, if as here we have associated a parameter -such as temperature with each fit, we can plot the refined parameter vs. temperature. We would like -to follow the T-dependence of the a-lattice parameter. To do this we need to select this parameter column. -Either select the AllVariables or Phase node in the NaCl experiment in the Experiments. The main -panel will then show either all the variables in a huge table, or just the parameters associated with the structural -model of the phase. All the variables associated with a single fit are in a single column of the table.

        -

        Scroll until you find the parameter of interest and select the column by clicking on the top of the column. Then click Tools -> Plot from the Menu Bar, or click the plot icon in the Tool Bar. A plot window will pop up (Figure).

        -

        You can select more than one parameter to plot by holding down Ctrl and selecting more parameters. If two parameters have similar values they will look good in one plot window, which will auto-scale based on the refined values. You can open as many plot windows as you like and so it is also possible to follow multiple parameters with different values in multiple plot windows.

        -
        -
        -_images/plot_window.png -

        -A plot window has been opened by selecting the column corresponding to the parameter, in this case it is the a-lattice parameter then clicking the plot icon on the tool bar. It looks flat because the refinements have not started and the initial values for this parameter is the same for each fit at each temperature.

        -

        Note

        -

        Since the refinement has not started yet, the curve in the plot window is a straight line. However, The shape of the curve will be updated in real time after the refinement starts.

        -
        -
        -
        -

        Add a job to the job list

        -
        -
        -_images/add_job.png -

        To add a job to the job list of the project, one has to select a refinement in the Experiment panel, and select the datasets to be included in the job from the right panel (grid panel). Then click on the menu item Experiment->Add job. The job will be added and shown in the Job panel list. To be noted, If no dataset is selected in the grid panel when adding the job, all datasets in the selected refinement will be included in the job.

        -

        A detailed instruction on the Job panel can be found in :ref:here <the_job_panel>.

        -
        -
        -

        Start the Sequential Refinement

        -

        To start the refinement jobs listed in the Job panel, simply click on the Start a refinement button in the tool bar. SrRietveld will automatically run the refinement jobs in the job panel from the top of the list. Because of the large number of fits, the refinement will take some time to complete. You can take a break and have a coffee and come back later to view the results, or you can interrupt the fit and restart it with fewer data-sets loaded (see bellow).

        -
        -

        Note

        -

        During a refinement, SrRietveld switches to the strategy view, with the active refinement step highlighted, output -messages from the engine will be printed in the output panel, and the parameter values in the strategy -view and the plot window will be updated in real time (Figure). The grid data view above the strategy panel will also be updated in real time during the refinement.

        -

        Enlarge

        -
        -_images/running.png -

        -SrRietveld is running

        User can also refine certain fits in the list. Simply select the rows in the data grid view on the right panel, and start the refinement by right clicking on the row labels, then SrRietveld will refine only the selected fits.

        -
        -
        -

        Handling Divergent Refinements

        -

        FullProf has difficulty converging the fit at certain temperatures, which would require considerable human intervention if FullProf were being used without SrRietveld. However SrRietveld can handle the divergence during sequential refinement. When the refinement on certain temperature diverges, SrRietveld will skip the current dataset and continue on the refinement on the next refinement. The diverged datasets will be highlighted in the result grid view, as can be seen in the figure bellow. The results shown in the figure are saved in the project file NaCl_step_over.srr file under the example folder.

        -

        To converge the diverged fits you can try and rerun the refinements. Each data-set has a status associated with it so that SrRietveld knows if it is not-run, converged, or not converged. The refinement can be rerun on all datasets or just not-run and not-converged datasets. If necessary you can change the starting parameter values or the refinement strategy by editing in the SrRietveld window to help convergence.

        -
        -
        -_images/exception.png -

        -The SrRietveld software can handle the diverged refinement on datasets during sequential refinements. The above figure shows the results of the sequential refinements with a different version of FullProf which produced some diverged refinements on some datasets, which is highlighted in the grid view. The step-over example results are saved in NaCl_step_back.srr in the example folder.

        -

        Note

        -

        The results shown above are obtained with FullProf v4.80. We also found that different versions of FullProf may produce different refinement results on our testing with the same settings. So if you get any results different from what are showing above, a different version number may be the reason.

        -
        -
        -
        -

        Viewing the Results

        -

        After the refinements are complete, to view the results, click on the highest node in the Experiments panel (NaCl_EXP in our example). The results, consisting of all the refined parameters and their standard deviations, will appear in the right panel (Figure). It can be seen that there are several checkboxes, above the grid data view, All, Unrefined, Converged, and Diverged. Users can use these checkboxes to filter the refinement to be shown in the grid bellow.

        -
        -
        -_images/result.png -

        -The result panel

        -

        Note

        -

        In the result panel the uncertainties will show when possible. The uncertainties will not be -displayed in other panels.

        -
        -
          -
        • To plot the result values against the environment parameters, select the entire column by click on the label, click on Tools->Plot or click on the plot button on the tool bar
          • -
        • To plot two result values against each other, select the two columns, click on Tools->Plot XY
          • -
        • To plot the refinement history of a result value, switch to the result panel (click NaCl node on the left Experiments panel), select the entire column in the result panel to the right, click on Tools->Plot history
          • -
        • To plot the current pattern of the diffraction data, select the NaCl node on the Experiments panel, click on Tools->Plot or click on the plot button on the tool bar
          • -
        -
        -

        Note

        -

        As can be seen in the plot window interface, the functionality of SrRietveld plot window is extended (Figure). The details about the extended plot window in SrRietveld can be found in here.

        -
        -
        -
        -_images/plot_setup.png -

        -The extended plot window

        -
        -

        Setup and Run the FullProf Refinement with SrRietveld

        -

        User can load more than one refinements in a project. As the GSAS refinement has already completed on the NaCl data, users can load the FullProf refinement into the project. Simply click Add new refinement... button in the toolbar and select the PCR file in the example folder. One can load the data and start the refinement similar as shown above.

        -
        -
        -

        After the Refinement

        -

        SrRietveld provides convenient access to the refinement data and results.

        -
        -

        Export the data view to CSV file

        -

        The values in the grid data view can be exported to CSV file. Users can click the menu button Export->CSV. A dialog will be popped up for the user to input the csv file name. If no cell is selected in the grid view, the whole view will be exported to the csv file. The user can also select the cell in the grid data view and export. In this case, the minimum block in the data view containing the selected cells will be exported.

        -
        -
        -

        Load the data view from a text data file

        -

        If users would like to change the values in the grid view, a text data file in multi column or CSV format can be loaded into the grid. By clicking Menu->Load->Import text data, a preview dialog will show. User can choose the format of the file, or make any changed on values on cells, before importing these data into the grid view. -.. _fg_import_text_data:

        -
        -
        _images/import_text_data.png -

        -The extended plot window

        -
        -
        -

        Export the refinement setup files

        -

        User can also export the refinement results to the EXP or pcr files which are recognizable by GSAS and FullProf, respectively. User can select the single refinement in the grid data view, from which the data will be exported, and then select the Export->EXP/pcr and a dialog will pop up. Users can input the descriptive part of the file name, the software will prefix the user given name to distinguish the setup file exported from different refinements in a sequence.

        -
        -
        -

        Export the distance and angle information from the refinement

        -
        -

        Note

        -

        The DISAGL file exportation is only available for refinement with GSAS engine.

        -
        -

        Similar to the refinement setup files, the distance and angle information can be exported to DISAGL files. User can select the single refinement in the grid data view, from which the data will be exported, and then select the Export->DISAGL and a dialog will pop up. Users can input the descriptive part of the file name, the software will prefix the user given name to distinguish the setup file exported from different refinements in a sequence.

        -
        -
        -
        -

        Re-running the Refinement

        -

        Depending on the results, one might need to re-run the refinement using different initial values. To change the initial values, select the node that you’re interested in from the Experiments panel, then double click the cell whose value you want to change in the right panel, edit the value, and then hit Enter to update the value. Once all changes have been made, reset the fits status via Refinement->Reset, then re-run the refinement as detailed above.

        -

        Additionally, it is also possible to update the initial values using GSAS or FullProf and then reloading the setup file in SrRietveld.

        -
        -
        -

        Stop the Sequential Refinement

        -

        While SrRietveld is running refinements on sequential data, the sequential refinement can be terminated at any time by clicking the Stop button in the tool bar (also available in the menu Run->stop), as shown in the Figure bellow.

        -
        -
        -_images/stop_sequential.png -

        -Stop the sequential refinement by clicking the button in tool bar

        Please be noted that the Stop button will only be activated when the sequential refinement is running and the top node of the experiment on the left panel is selected (NaCl in this case). After stopped the sequential refinement can be restarted by click the Start a refinement button in tool bar or Run->Sequential in the menu.

        -
        -

        Note

        -

        While the stop button is clicked, the SrRietveld will record this event and stop after finish the refinement on current dataset.

        -
        -
        -
        -

        Saving and Loading Project Files

        -

        The user can save the current settings by click on File->Save Project..., results, and strategy into a stand-alone binary file in HDF5 format, with the file extension .SRR. This file can be loaded to analyze the result or continue refinement.

        -
        -

        Note

        -

        The refinement strategy information will be also saved in the project binary file. The data file and instrument file paths will be saved in the project binary file.

        -
        -

        In the example folder there are two HDF5 project files provided.

        -
        -
          -
        • NaCl.srr – the project file with FullProf as refinement engine
          • -
        -
        -

        To open an project, click File->Open project... in menu or directly click on the open file icon in tool bar, then just choose the data file to load from the opened file dialog.

        -

        These files contains the complete refinement setup information and refinement results for two different refinement engines. User can view the results and settings saved in the .SRR file via.

        -
        -
        -

        Archive the Project File and Source Files in zip

        -

        It is possible to archive the project file and source files in a zip file, which is much smaller thus convenient to handle via internet. To archive the current project, the user can click on the Archive project in zip button in toolbar. Then a file dialog will show, by which user can select the path and file name of the zip file.

        -
        -
        -
        -

        Bug Report and User Feedback

        -
        -

        Bugs Bite Me!

        -

        Though efforts are made to make SrRietveld program bug-free, different work environments, unexpected conditions, or various platforms and hardwares may cause errors while using this program. In this case, if you can report the error message back to the development group, it will help us in improvement on SrRietveld greatly. Users can submit the bug reports to the developers mailing list in Google group: http://groups.google.com/group/srrietveld-dev.

        -

        For your convenience, when the program encounters an error, a report window will pop up, as can be seen in the following figure.

        -
        -
        -_images/bug_report.png -

        -The bug report window when the program encuonters an error.

        -

        Note

        -

        Though the user’s email address is optional in the error report form, we encourage the user to provide this information, so that the developers can contact the user for more details of the reported error.

        -
        -
        -
        -

        User Feedback and Community

        -

        The opinions from SrRietveld users are important to us. The user community can also be used to solve issues in various use cases. If you have any questions, suggestions, feature request, or just some ideas to share with us, please share with us in the SrRietveld user online community in Google Groups: http://groups.google.com/group/srrietveld-users.

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        Navigation

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        -
        - © Copyright 2013, Peng Tian, Wenduo Zhou, Jiwu Liu, Yingrui Shang, Chris Farrow, Pavol Juhas, Emil Bozin, and Simon Billinge. - Last updated on Jan 11, 2013. - Created using Sphinx 1.1.3. -
        - - \ No newline at end of file diff --git a/static_root/doc/srrietveld/xml_interface.html b/static_root/doc/srrietveld/xml_interface.html deleted file mode 100644 index b289e6fd..00000000 --- a/static_root/doc/srrietveld/xml_interface.html +++ /dev/null @@ -1,310 +0,0 @@ - - - - - - - The XML Interface — SrRietveld vBeta 1.0 documentation - - - - - - - - -
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        Table Of Contents

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        This Page

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        The XML Interface

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        Currently SrRietveld is running from command lines in a terminal. The input values are provided in the format of data files, mostly in the form of XML files.

        -

        There are three major files: the instrument file, the structure file, and the refinement strategy file

        -
        -

        Instrument File

        -
        -

        The instrument file is passed into the –instrument or -i option in refinement or sequential refinement. The instrument file can either be .iparm files or .xml data files. A typical .xml file will be read as follows:

        -
        <?xml version="1.0" ?>
-<INSTRUMENT Name="11_IDC" Type="Xray">
-        <BACKGROUND Type="Polynomial" Order="3" Coefficients="1230,-34"/>
-        <ENERGY Lambda="0.107751" Lambda2="0.107751" Ratio="0.0" Resolution="5.0e-3"/>
-        <PEAKPROFILE Scale="1.25" Ctof="0.003" Type="TCHPseudoVoigtProfile" U="1400.38" V="0.0" W="18.0919" X="0.0" Y="5.0" Z="0.0"/>
-        <SETUP Zero="-0.18">
-                <EXCLUDEDREGION Begin="0.0" End="0.51"/>
-                <EXCLUDEDREGION Begin="30.0" End="50.0"/>
-        </SETUP>
-</INSTRUMENT>
        -
        -

        The tags in the xml file is discussed as follows:

        -
        -
        -

        <INSTRUMENT/>

        -
        -

        This is the root XML tag, which contains all the information of the instrument. There are two attibutes: Name, and Type. The Name tag is merely a note on the experiment instrument name. The value for Type can be:

        -
        "Constant Wave Length"
-"Xray"
-"NeutronCW"
-"TOF"
-"ThermalNeutronTOF"
-
        -
        -
        -
        -
        -

        <BACKGROUND/>

        -
        -

        The background type and specifications are contained in this tag. The background type can be defined as following values:

        -
        "Interpolated"
-"Polynomial"
-"Chebyschev"
-"CFourier"
-"QExp"
-"QExpInv"
-
        -
        -
        -

        Note

        -

        If the background type is “Interpolated”, a file with customer picked background points have to be provide to the refinement engine

        -
        -

        The order of the background function s provided in the “Order” attribute, if applicable. The default value for “Order” is 12, if not provided in the XML file.

        -

        Also, the user can provide the coefficients to the refinement engine, and the coefficients of the background equation should be separated with comma:

        -
        Coefficients="b0,b1"
-
        -
        -
        -
        -
        -

        <ENERGY/>

        -
        -

        The energy related instrument information is specified in this tag.

        -

        The attributes:

        -

        Lambda1, Lambda2 - wavelengths, unit is Ångström.

        -

        Ratio -

        -

        Resolution - ΔE/E

        -
        -
        -
        -

        <PEAKPROFILE/>

        -
        -

        This tag contains the peak profile information in the refinement. The attributes include:

        -

        Scale - The scale on the height of the peaks

        -

        Ctof - Peak width cutoff

        -

        U, V, W, X, Y, Z - The peak profile coefficients

        -

        Type - Type of peak profile, which can be:

        -
        "GaussianProfile"
-"TCHPseudoVoigtProfile"
-"FCJPseudoVoigtProfile"
-"FCJMicroPVProfile"
-"GaussianExp"
-"TOFPseudoVoigtIkedaCarpenter"
-"PseudoVoigtExp"
-"PseudoVoigtMicroExp"
-
        -
        -
        -
        -
        -

        <SETUP/>

        -
        -

        This tag contains other setups in the instrument related refinement parameters. Users can specify the excluded regions in a sub tag <EXCLUDEDREGION />. The attribute:

        -

        Zero - The zero shift value on the calculated pattern

        -
        -
        -
        -
        -

        Structure File

        -
        -

        The structure file contains the initial value of the material structure. A typical structure information file can be read as following:

        -
        <?xml version="1.0" ?>
-<MODEL>
-        <PHASE Name="BaFe2As2" SpaceGroup="I 4/m m m" Type="User" a="3.95" alpha="90.0" b="3.95" beta="90.0" c="12.945" gamma="90.0">
-                <ATOM occ='1.0' Element='Ba' Uiso='0.01251' Tag='BA' y='0.0' x='0.0' z='0.0'/>
-                <ATOM occ='1.0' Element='Fe' Uiso='0.005159' Tag='FE' y='0.5' x='0.0' z='0.25'/>
-                <ATOM occ='1.0' Element='As' Uiso='0.003928' Tag='AS' y='0.0' x='0.0' z='0.353539'/>
-        </PHASE>
-</MODEL>
        -
        -

        The <MODEL /> tag is the root node, which contains all the information for the proposed structure model. Inside the model, there could be more than one phase. The structure information for each phase is contained in the <PHASE /> tag.

        -
        -
        -

        <PHASE/>

        -
        -

        The attributes in this tag can be:

        -

        Name - The name of the phase

        -

        SpaceGroup - The space group indicator of this phase

        -

        Type - If the value is User, the engine will read the structure information in this xml file. -If the type value is CIF, the engine will read the CIFName attribute value as the CIF file name and read the structure information in the CIF file.

        -

        CIFName - The value should be the CIF file name which contains the structure information. This attribute is only available when the Type is set to be “CIF”

        -

        a, b, c, alpha, beta, gamma - The lattice contants of the phase model

        -
        -
        -
        -

        <ATOM/>

        -
        -

        This contains the atom information under a phase.

        -

        occ - Occupation of the atom

        -

        Element - The element name of the atom

        -

        Uiso - The initial guess of the Uiso value of this atom

        -

        Tag - The tag to be displayed for this atom in the result visualization

        -

        x, y, z - The position information of the atom

        -
        -
        -
        -
        -

        Strategy File

        -
        -

        Users can define the refinement strategy by editing the strategy file. A typical strategy file reads as following:

        -
        <?xml version="1.0" ?>
-<REFINESTRATEGY>
-        <STEP Refine-Type="rietveld" Stage="1" Step-Number="1">
-                <ADDGUIDE Guide="ScaleGuide" Stage="1"/>
-        </STEP>
-        <STEP Refine-Type="rietveld" Stage="1" Step-Number="2">
-                <ADDGUIDE Guide="ZeroGuide" Stage="1"/>
-        </STEP>
-        <STEP Refine-Type="rietveld" Stage="1" Step-Number="3">
-                <ADDGUIDE Guide="BackgroundGuide" Stage="1"/>
-        </STEP>
-        <STEP Refine-Type="rietveld" Stage="1" Step-Number="4">
-                <ADDGUIDE Guide="LatticeGuide" Stage="1"/>
-        </STEP>
-        <STEP Refine-Type="rietveld" Stage="1" Step-Number="5">
-                <ADDGUIDE Guide="BackgroundGuide" Stage="1"/>
-        </STEP>
-        <STEP Refine-Type="rietveld" Stage="1" Step-Number="6">
-                <ADDGUIDE Guide="FractionalCoordinateGuide" Stage="1"/>
-        </STEP>
-        <STEP Refine-Type="rietveld" Stage="1" Step-Number="7">
-                <ADDGUIDE Guide="PeakShapeGuide" Stage="1"/>
-        </STEP>
-        <STEP Refine-Type="rietveld" Stage="1" Step-Number="8">
-                <ADDGUIDE Guide="ADPGuide" Stage="1"/>
-        </STEP>
-</REFINESTRATEGY>
        -
        -

        It can be seen that under the root node <REFINESTRATEGY/> the refinement steps are defined.

        -
        -
        -

        <STEP/>

        -
        -

        This tag defines the steps in the strategy.

        -

        Refine-Type - rietveld or lebail

        -

        Stage - An integer indicates the stage of the refinement

        -

        Step-Number - An integer indicates the order of the steps, the bigger the later

        -
        -The child node <ADDGUIDE/> or <REMOVEGUIDE/> can be added to the <STEP/> node
        -
        -
        -
        -

        <ADDGUIDE/> and <REMOVEGUIDE/>

        -
        -

        The tag defines the details of the step to remove or add.

        -

        Guide - The parameter to refine. The value for this attribute can be:

        -
        "ADPGuide"
-"BackgroundGuide"
-"FractionalCoordinateGuide"
-"LatticeGuide"
-"OccupancyGuide"
-"PeakShapeGuide"
-"ScaleGuide"
-"ExpDecayGuide"
-"ZeroGuide"
-"AbsorptionCorrectionGuide"
-"WavelengthGuide"
-
        -
        -
        -
        -
        -
        - - -
        -
        -
        -
        -
        -
        -

        Navigation

        - -
        -
        - © Copyright 2010, Peng Tian, Wenduo Zhou, Jiwu Liu, Yingrui Shang, Chris Farrow, Pavol Juhas, Emil Bozin, and Simon Billinge. - Last updated on Apr 20, 2010. - Created using Sphinx 0.6.5. -
        - - \ No newline at end of file diff --git a/static_root/doc/srxplanar/index.html b/static_root/doc/srxplanar/index.html deleted file mode 100644 index d2e17d14..00000000 --- a/static_root/doc/srxplanar/index.html +++ /dev/null @@ -1,15 +0,0 @@ - - - - - - - -Page Redirection - - -If you are not redirected automatically, follow the -link. diff --git a/static_root/doc/structure/index.html b/static_root/doc/structure/index.html deleted file mode 100644 index b8a49feb..00000000 --- a/static_root/doc/structure/index.html +++ /dev/null @@ -1,15 +0,0 @@ - - - - - - - -Page Redirection - - -If you are not redirected automatically, follow the -link. diff --git a/static_root/doc/utils/index.html b/static_root/doc/utils/index.html deleted file mode 100644 index b0dd9311..00000000 --- a/static_root/doc/utils/index.html +++ /dev/null @@ -1,13 +0,0 @@ - - - - - - - -Page Redirection - - -If you are not redirected automatically, follow the link diff --git a/static_root/doc/xinterpdf/Shi-jac-2018.pdf b/static_root/doc/xinterpdf/Shi-jac-2018.pdf deleted file mode 100644 index 3d39bd7d..00000000 Binary files a/static_root/doc/xinterpdf/Shi-jac-2018.pdf and /dev/null differ diff --git a/static_root/doc/xinterpdf/xINTERPDF_User_Guide_20180615.pdf b/static_root/doc/xinterpdf/xINTERPDF_User_Guide_20180615.pdf deleted file mode 100644 index 1c418924..00000000 Binary files a/static_root/doc/xinterpdf/xINTERPDF_User_Guide_20180615.pdf and /dev/null differ diff --git a/static_root/products/pdfgetx3.html b/static_root/products/pdfgetx3.html deleted file mode 100644 index 6bbf31f1..00000000 --- a/static_root/products/pdfgetx3.html +++ /dev/null @@ -1,13 +0,0 @@ - - - - - - - -Page Redirection - -If you are not redirected automatically, -follow the link. diff --git a/styles/diffpy.css b/styles/diffpy.css new file mode 100644 index 00000000..d79a8497 --- /dev/null +++ b/styles/diffpy.css @@ -0,0 +1,175 @@ +body, td, p { + font-family: arial,helvetica,sans-serif; + font-family: arial,helvetica,sans-serif; +} + +th { + font-family: arial,helvetica,sans-serif; + font-weight: bold; + text-align: left; +} + +em { + font-weight: bold; + font-style: italic; +} + +.darkbg { + background-color: #007f00; +} + +.lightbg { + background-color: #cccc99; +} + +.sidebar { + font-family: arial,helvetica,sans-serif; + background-color: #f0f0dd; + font-size: small; +} + +.topheader { + font-family: arial,helvetica,sans-serif; + font-size: large; + font-weight: bold; + background-color: #cccc99; +} + +.sidebarheader { + font-family: arial,helvetica,sans-serif; + font-size: small; + font-weight: bold; +} + +.newsdate { + font-style: italic; + color: #6666cc; + font-size:small; +} + +pre,code { + font-family: "andale mono", "monotype.com", "courier new", monospace; +} + +h1 { + font-family: arial,helvetica,sans-serif; + font-size: medium; + font-weight: bold; + color: #000066; +} + +.txth1 { + font-family: arial,helvetica,sans-serif; + font-size: medium; + font-weight: bold; + color: #000066; +} + +h2 { + font-family: arial,helvetica,sans-serif; + font-size: small; + font-weight: bold; + color: #000066; +} + +.txth2 { + font-family: arial,helvetica,sans-serif; + font-size: small; + font-weight: bold; + color: #000066; +} + +h3 { + font-family: arial,helvetica,sans-serif; + font-size: x-small; + font-weight: bold; + color: #000066; +} + +.txth3 { + font-family: arial,helvetica,sans-serif; + font-size: x-small; + font-weight: bold; + color: #000066; +} + +small { + font-family: arial,helvetica,sans-serif; + font-size: 75%; +} + +a.small { + font-family: arial,helvetica,sans-serif; + font-size: 75%; + text-decoration: none; + color: #000066 +} + +.style1 { + color: #666666 +} + +input { + font-family: arial,helvetica,sans-serif; +} + +textarea { + font-family: arial, helvetica, sans-serif; + width: 100%; +} + +.prompt { + font-family: arial,helvetica,sans-serif; + font-weight: bold; +} + +.errortext { + font-family: arial,helvetica,sans-serif; + color: #cc0000 +} + +.errorheader { + font-family: arial,helvetica,sans-serif; + color: #cc0000; + font-size: medium; +} + +.tableheader { + font-family: arial,helvetica,sans-serif; + font-weight: bold; + background-color: #CCCC99; +} + +.rowodd { + font-family: arial,helvetica,sans-serif; + background-color: #F0F0DD; +} + +.roweven { + font-family: arial,helvetica,sans-serif; + background-color: #CCCC99; +} + +tr.tableheader th { + font-family: arial,helvetica,sans-serif; + background-color: #CCCC99; + text-align: center; +} + + +td.checker { + background-color: #007f00; + background-image: url(/images/checkerboard.png); +} + +.license { + font-family: "andale mono", "monotype.com", "courier new", monospace; + font-size: 75%; +} + +li { padding-bottom: 6pt } + +IMG.middle { + vertical-align: top; + border: 0; +} diff --git a/themes/bootstrap/globaltoc.html b/themes/bootstrap/globaltoc.html deleted file mode 100644 index d5df46c6..00000000 --- a/themes/bootstrap/globaltoc.html +++ /dev/null @@ -1,10 +0,0 @@ -
      • - {{ theme_navbar_site_name }} - -
        • diff --git a/themes/bootstrap/layout.html b/themes/bootstrap/layout.html deleted file mode 100644 index c21e4414..00000000 --- a/themes/bootstrap/layout.html +++ /dev/null @@ -1,107 +0,0 @@ -{% extends "basic/layout.html" %} - -{% if theme_bootstrap_version == "3" %} - {% set bootstrap_version, navbar_version = "3.3.7", "" %} - {% set bs_span_prefix = "col-md-" %} -{% else %} - {% set bootstrap_version, navbar_version = "2.3.2", "-2" %} - {% set bs_span_prefix = "span" %} -{% endif %} - -{%- set render_sidebar = (not embedded) and (not theme_nosidebar|tobool) and sidebars %} - -{%- set bs_content_width = render_sidebar and "9" or "12"%} - -{%- block doctype -%} - -{%- endblock %} - -{# Sidebar: Rework into our Bootstrap nav section. #} -{% macro navBar() %} -{% include "navbar" + navbar_version + ".html" %} -{% endmacro %} - -{% if theme_bootstrap_version == "3" %} - {%- macro bsidebar() %} - {%- if render_sidebar %} -
        - -
        - {%- endif %} - {%- endmacro %} -{% else %} - {%- macro bsidebar() %} - {%- if render_sidebar %} -
        - -
        - {%- endif %} - {%- endmacro %} -{% endif %} - -{%- block extrahead %} - - - - - - - - -{% endblock %} - -{# Silence the sidebar's, relbar's #} -{% block header %}{% endblock %} -{% block relbar1 %}{% endblock %} -{% block relbar2 %}{% endblock %} -{% block sidebarsourcelink %}{% endblock %} - -{%- block content %} -{{ navBar() }} -
        -
        - {%- block sidebar1 %}{{ bsidebar() }}{% endblock %} -
        - {% block body %}{% endblock %} -
        - {% block sidebar2 %} {# possible location for sidebar #} {% endblock %} -
        -
        -{%- endblock %} - -{%- block footer %} -
        -
        -

        - Back to top - {% if theme_source_link_position == "footer" %} -
        - {% include "sourcelink.html" %} - {% endif %} -

        -

        - {%- if show_copyright %} - {%- if hasdoc('copyright') %} - {% trans path=pathto('copyright'), copyright=copyright|e %}© Copyright {{ copyright }}.{% endtrans %}
        - {%- else %} - {% trans copyright=copyright|e %}© Copyright {{ copyright }}.{% endtrans %}
        - {%- endif %} - {%- endif %} - {%- if last_updated %} - {% trans last_updated=last_updated|e %}Last updated on {{ last_updated }}.{% endtrans %}
        - {%- endif %} - {%- if show_sphinx %} - {% trans sphinx_version=sphinx_version|e %}Created using Sphinx {{ sphinx_version }}.{% endtrans %}
        - {%- endif %} -

        -
        -
        -{%- endblock %} diff --git a/themes/bootstrap/localtoc.html b/themes/bootstrap/localtoc.html deleted file mode 100644 index 6e6c03b8..00000000 --- a/themes/bootstrap/localtoc.html +++ /dev/null @@ -1 +0,0 @@ -{{ toc }} diff --git a/themes/bootstrap/navbar-2.html b/themes/bootstrap/navbar-2.html deleted file mode 100644 index 5f7116fc..00000000 --- a/themes/bootstrap/navbar-2.html +++ /dev/null @@ -1,51 +0,0 @@ -
        -
        -
        - - - - - {%- block sidebarlogo %} - {%- if logo %}{%- endif %} - {%- endblock %} - {% if theme_navbar_title -%}{{ theme_navbar_title|e }}{%- else -%}{{ project|e }}{%- endif -%} - - {{ version|e }} - -
        -
          -
        • - {% if theme_navbar_links %} - {%- for link in theme_navbar_links %} -
        • {{ link[0] }}
          • - {%- endfor %} - {% endif %} - {% block navbartoc %} - {% include "globaltoc.html" %} - {% if theme_navbar_pagenav %} - {% include "navbartoc.html" %} - {% endif %} - {% endblock %} - {% if theme_navbar_sidebarrel %} - {% block sidebarrel %} - {% include "relations.html" %} - {% endblock %} - {% endif %} - {% block navbarextra %} - {% endblock %} - {% if theme_source_link_position == "nav" %} -
        • {% include "sourcelink.html" %}
          • - {% endif %} -
        - - {% block navbarsearch %} - {% include "navbarsearchbox.html" %} - {% endblock %} -
        -
        -
        -
        diff --git a/themes/bootstrap/navbar.html b/themes/bootstrap/navbar.html deleted file mode 100644 index 5c1d9b9b..00000000 --- a/themes/bootstrap/navbar.html +++ /dev/null @@ -1,49 +0,0 @@ -
        -
        -
        - - - - {%- block sidebarlogo %} - {%- if logo %}{%- endif %} - {%- endblock %} - {% if theme_navbar_title -%}{{ theme_navbar_title|e }}{%- else -%}{{ project|e }}{%- endif -%} - - {{ version|e }} -
        - -
        -
          - {% if theme_navbar_links %} - {%- for link in theme_navbar_links %} -
        • {{ link[0] }}
          • - {%- endfor %} - {% endif %} - {% block navbartoc %} - {% include "globaltoc.html" %} - {% if theme_navbar_pagenav %} - {% include "navbartoc.html" %} - {% endif %} - {% endblock %} - {% if theme_navbar_sidebarrel %} - {% block sidebarrel %} - {% include "relations.html" %} - {% endblock %} - {% endif %} - {% block navbarextra %} - {% endblock %} - {% if theme_source_link_position == "nav" %} - - {% endif %} -
        - - {% block navbarsearch %} - {% include "navbarsearchbox.html" %} - {% endblock %} -
        -
        -
        diff --git a/themes/bootstrap/navbarsearchbox.html b/themes/bootstrap/navbarsearchbox.html deleted file mode 100644 index 82e93389..00000000 --- a/themes/bootstrap/navbarsearchbox.html +++ /dev/null @@ -1,9 +0,0 @@ -{%- if pagename != "search" %} -
        -
        - -
        - - -
        -{%- endif %} diff --git a/themes/bootstrap/navbartoc.html b/themes/bootstrap/navbartoc.html deleted file mode 100644 index 8def043a..00000000 --- a/themes/bootstrap/navbartoc.html +++ /dev/null @@ -1,10 +0,0 @@ -
      • - {{ _(theme_navbar_pagenav_name) }} - -
        • diff --git a/themes/bootstrap/relations.html b/themes/bootstrap/relations.html deleted file mode 100644 index 7bdc8f1f..00000000 --- a/themes/bootstrap/relations.html +++ /dev/null @@ -1,19 +0,0 @@ -{# Switch to icon instead of text in `sm` view size for BS3 only. #} -{%- if prev %} -
      • - - {%- if theme_bootstrap_version == "2" -%}{%- endif -%} - {%- if theme_bootstrap_version == "3" -%}{%- endif -%} - - -
        • -{%- endif %} -{%- if next %} -
      • - - {%- if theme_bootstrap_version == "2" -%}{%- endif -%} - {%- if theme_bootstrap_version == "3" -%}{%- endif -%} - - -
        • -{%- endif %} diff --git a/themes/bootstrap/search.html b/themes/bootstrap/search.html deleted file mode 100644 index 60a6601b..00000000 --- a/themes/bootstrap/search.html +++ /dev/null @@ -1,69 +0,0 @@ -{# - basic/search.html - ~~~~~~~~~~~~~~~~~ - - Template for the search page. - - :copyright: Copyright 2007-2013 by the Sphinx team, see AUTHORS. - :license: BSD, see LICENSE for details. -#} -{%- extends "layout.html" %} -{% set title = _('Search') %} -{% block extrahead %} - - - {# this is used when loading the search index using $.ajax fails, - such as on Chrome for documents on localhost #} - - {{ super() }} -{% endblock %} -{% block body %} -

        {{ _('Search') }}

        -
        - -

        - {% trans %}Please activate JavaScript to enable the search - functionality.{% endtrans %} -

        -
        -

        - {% trans %}From here you can search these documents. Enter your search - words into the box below and click "search". Note that the search - function will automatically search for all of the words. Pages - containing fewer words won't appear in the result list.{% endtrans %} -

        - - {% if theme_bootstrap_version == "3" %} -
        -
        - -
        - - -
        - {% else %} -
        - - - -
        - {% endif %} - - {% if search_performed %} -

        {{ _('Search Results') }}

        - {% if not search_results %} -

        {{ _('Your search did not match any documents. Please make sure that all words are spelled correctly and that you\'ve selected enough categories.') }}

        - {% endif %} - {% endif %} -
        - {% if search_results %} -
          - {% for href, caption, context in search_results %} -
        • {{ caption }} -
          {{ context|e }}
          -
          • - {% endfor %} -
        - {% endif %} -
        -{% endblock %} diff --git a/themes/bootstrap/searchbox.html b/themes/bootstrap/searchbox.html deleted file mode 100644 index 53755f37..00000000 --- a/themes/bootstrap/searchbox.html +++ /dev/null @@ -1,9 +0,0 @@ -{%- if pagename != "search" %} -
        -
        - -
        - - -
        -{%- endif %} diff --git a/themes/bootstrap/searchresults.html b/themes/bootstrap/searchresults.html deleted file mode 100644 index cfb0aa40..00000000 --- a/themes/bootstrap/searchresults.html +++ /dev/null @@ -1,38 +0,0 @@ -{# - basic/searchresults.html - ~~~~~~~~~~~~~~~~~~~~~~~~ - - Template for the body of the search results page. - - :copyright: Copyright 2007-2011 by the Sphinx team, see AUTHORS. - :license: BSD, see LICENSE for details. -#} -

        Search

        -

        - From here you can search these documents. Enter your search - words into the box below and click "search". -

        - -
        - - - -
        - -{%- if search_performed %} -

        Search Results

        - {%- if not search_results %} -

        Your search did not match any results.

        - {%- endif %} -{%- endif %} -
        - {%- if search_results %} -
          - {% for href, caption, context in search_results %} -
        • {{ caption }} -
          {{ context|e }}
          -
          • - {% endfor %} -
        - {%- endif %} -
        diff --git a/themes/bootstrap/sourcelink.html b/themes/bootstrap/sourcelink.html deleted file mode 100644 index 3cf73358..00000000 --- a/themes/bootstrap/sourcelink.html +++ /dev/null @@ -1,6 +0,0 @@ -{%- if show_source and has_source and sourcename %} - -{%- endif %} diff --git a/themes/bootstrap/static/bootstrap-2.3.2/css/bootstrap-responsive.css b/themes/bootstrap/static/bootstrap-2.3.2/css/bootstrap-responsive.css deleted file mode 100644 index 09e88ce3..00000000 --- a/themes/bootstrap/static/bootstrap-2.3.2/css/bootstrap-responsive.css +++ /dev/null @@ -1,1109 +0,0 @@ -/*! - * Bootstrap Responsive v2.3.2 - * - * Copyright 2012 Twitter, Inc - * Licensed under the Apache License v2.0 - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Designed and built with all the love in the world @twitter by @mdo and @fat. - */ - -.clearfix { - *zoom: 1; -} - -.clearfix:before, -.clearfix:after { - display: table; - line-height: 0; - content: ""; -} - -.clearfix:after { - clear: both; -} - -.hide-text { - font: 0/0 a; - color: transparent; - text-shadow: none; - background-color: transparent; - border: 0; -} - -.input-block-level { - display: block; - width: 100%; - min-height: 30px; - -webkit-box-sizing: border-box; - -moz-box-sizing: border-box; - box-sizing: border-box; -} - -@-ms-viewport { - width: device-width; -} - -.hidden { - display: none; - visibility: hidden; -} - -.visible-phone { - display: none !important; -} - -.visible-tablet { - display: none !important; -} - -.hidden-desktop { - display: none !important; -} - -.visible-desktop { - display: inherit !important; -} - -@media (min-width: 768px) and (max-width: 979px) { - .hidden-desktop { - display: inherit !important; - } - .visible-desktop { - display: none !important ; - } - .visible-tablet { - display: inherit !important; - } - .hidden-tablet { - display: none !important; - } -} - -@media (max-width: 767px) { - .hidden-desktop { - display: inherit !important; - } - .visible-desktop { - display: none !important; - } - .visible-phone { - display: inherit !important; - } - .hidden-phone { - display: none !important; - } -} - -.visible-print { - display: none !important; -} - -@media print { - .visible-print { - display: inherit !important; - } - .hidden-print { - display: none !important; - } -} - -@media (min-width: 1200px) { - .row { - margin-left: -30px; - *zoom: 1; - } - .row:before, - .row:after { - display: table; - line-height: 0; - content: ""; - } - .row:after { - clear: both; - } - [class*="span"] { - float: left; - min-height: 1px; - margin-left: 30px; - } - .container, - .navbar-static-top .container, - .navbar-fixed-top .container, - .navbar-fixed-bottom .container { - width: 1170px; - } - .span12 { - width: 1170px; - } - .span11 { - width: 1070px; - } - .span10 { - width: 970px; - } - .span9 { - width: 870px; - } - .span8 { - width: 770px; - } - .span7 { - width: 670px; - } - .span6 { - width: 570px; - } - .span5 { - width: 470px; - } - .span4 { - width: 370px; - } - .span3 { - width: 270px; - } - .span2 { - width: 170px; - } - .span1 { - width: 70px; - } - .offset12 { - margin-left: 1230px; - } - .offset11 { - margin-left: 1130px; - } - .offset10 { - margin-left: 1030px; - } - .offset9 { - margin-left: 930px; - } - .offset8 { - margin-left: 830px; - } - .offset7 { - margin-left: 730px; - } - .offset6 { - margin-left: 630px; - } - .offset5 { - margin-left: 530px; - } - .offset4 { - margin-left: 430px; - } - .offset3 { - margin-left: 330px; - } - .offset2 { - margin-left: 230px; - } - .offset1 { - margin-left: 130px; - } - .row-fluid { - width: 100%; - *zoom: 1; - } - .row-fluid:before, - .row-fluid:after { - display: table; - line-height: 0; - content: ""; - } - .row-fluid:after { - clear: both; - } - .row-fluid [class*="span"] { - display: block; - float: left; - width: 100%; - min-height: 30px; - margin-left: 2.564102564102564%; - *margin-left: 2.5109110747408616%; - -webkit-box-sizing: border-box; - -moz-box-sizing: border-box; - box-sizing: 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.uneditable-input.span8 { - width: 462px; - } - input.span7, - textarea.span7, - .uneditable-input.span7 { - width: 400px; - } - input.span6, - textarea.span6, - .uneditable-input.span6 { - width: 338px; - } - input.span5, - textarea.span5, - .uneditable-input.span5 { - width: 276px; - } - input.span4, - textarea.span4, - .uneditable-input.span4 { - width: 214px; - } - input.span3, - textarea.span3, - .uneditable-input.span3 { - width: 152px; - } - input.span2, - textarea.span2, - .uneditable-input.span2 { - width: 90px; - } - input.span1, - textarea.span1, - .uneditable-input.span1 { - width: 28px; - } -} - -@media (max-width: 767px) { - body { - padding-right: 20px; - padding-left: 20px; - } - .navbar-fixed-top, - .navbar-fixed-bottom, - .navbar-static-top { - margin-right: -20px; - margin-left: -20px; - } - .container-fluid { - padding: 0; - } - .dl-horizontal dt { - float: none; - width: auto; - clear: none; - text-align: left; - } - .dl-horizontal dd { - margin-left: 0; - } - 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input[class*="span"], - .input-append input[class*="span"] { - display: inline-block; - width: auto; - } - .controls-row [class*="span"] + [class*="span"] { - margin-left: 0; - } - .modal { - position: fixed; - top: 20px; - right: 20px; - left: 20px; - width: auto; - margin: 0; - } - .modal.fade { - top: -100px; - } - .modal.fade.in { - top: 20px; - } -} - -@media (max-width: 480px) { - .nav-collapse { - -webkit-transform: translate3d(0, 0, 0); - } - .page-header h1 small { - display: block; - line-height: 20px; - } - input[type="checkbox"], - input[type="radio"] { - border: 1px solid #ccc; - } - .form-horizontal .control-label { - float: none; - width: auto; - padding-top: 0; - text-align: left; - } - .form-horizontal .controls { - margin-left: 0; - } - .form-horizontal .control-list { - padding-top: 0; - } - .form-horizontal .form-actions { - padding-right: 10px; - padding-left: 10px; - } - .media .pull-left, - .media .pull-right { - display: block; - float: none; - margin-bottom: 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border-bottom: 1px solid #f2f2f2; - -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.1), 0 1px 0 rgba(255, 255, 255, 0.1); - -moz-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.1), 0 1px 0 rgba(255, 255, 255, 0.1); - box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.1), 0 1px 0 rgba(255, 255, 255, 0.1); - } - .navbar-inverse .nav-collapse .navbar-form, - .navbar-inverse .nav-collapse .navbar-search { - border-top-color: #111111; - border-bottom-color: #111111; - } - .navbar .nav-collapse .nav.pull-right { - float: none; - margin-left: 0; - } - .nav-collapse, - .nav-collapse.collapse { - height: 0; - overflow: hidden; - } - .navbar .btn-navbar { - display: block; - } - .navbar-static .navbar-inner { - padding-right: 10px; - padding-left: 10px; - } -} - -@media (min-width: 980px) { - .nav-collapse.collapse { - height: auto !important; - overflow: visible !important; - } -} diff --git a/themes/bootstrap/static/bootstrap-2.3.2/css/bootstrap-responsive.min.css 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no-repeat; -} - -/* White icons with optional class, or on hover/focus/active states of certain elements */ - -.icon-white, -.nav-pills > .active > a > [class^="icon-"], -.nav-pills > .active > a > [class*=" icon-"], -.nav-list > .active > a > [class^="icon-"], -.nav-list > .active > a > [class*=" icon-"], -.navbar-inverse .nav > .active > a > [class^="icon-"], -.navbar-inverse .nav > .active > a > [class*=" icon-"], -.dropdown-menu > li > a:hover > [class^="icon-"], -.dropdown-menu > li > a:focus > [class^="icon-"], -.dropdown-menu > li > a:hover > [class*=" icon-"], -.dropdown-menu > li > a:focus > [class*=" icon-"], -.dropdown-menu > .active > a > [class^="icon-"], -.dropdown-menu > .active > a > [class*=" icon-"], -.dropdown-submenu:hover > a > [class^="icon-"], -.dropdown-submenu:focus > a > [class^="icon-"], -.dropdown-submenu:hover > a > [class*=" icon-"], -.dropdown-submenu:focus > a > [class*=" icon-"] { - background-image: url("../img/glyphicons-halflings-white.png"); -} - 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-} - -.icon-trash { - background-position: -456px 0; -} - -.icon-home { - background-position: 0 -24px; -} - -.icon-file { - background-position: -24px -24px; -} - -.icon-time { - background-position: -48px -24px; -} - -.icon-road { - background-position: -72px -24px; -} - -.icon-download-alt { - background-position: -96px -24px; -} - -.icon-download { - background-position: -120px -24px; -} - -.icon-upload { - background-position: -144px -24px; -} - -.icon-inbox { - background-position: -168px -24px; -} - -.icon-play-circle { - background-position: -192px -24px; -} - -.icon-repeat { - background-position: -216px -24px; -} - -.icon-refresh { - background-position: -240px -24px; -} - -.icon-list-alt { - background-position: -264px -24px; -} - -.icon-lock { - background-position: -287px -24px; -} - -.icon-flag { - background-position: -312px -24px; -} - -.icon-headphones { - background-position: -336px -24px; -} - -.icon-volume-off { - background-position: -360px -24px; -} - -.icon-volume-down { - background-position: -384px -24px; -} - -.icon-volume-up { - background-position: -408px -24px; -} - -.icon-qrcode { - background-position: -432px -24px; -} - -.icon-barcode { - background-position: -456px -24px; -} - -.icon-tag { - background-position: 0 -48px; -} - -.icon-tags { - background-position: -25px -48px; -} - -.icon-book { - background-position: -48px -48px; -} - -.icon-bookmark { - background-position: -72px -48px; -} - -.icon-print { - background-position: -96px -48px; -} - -.icon-camera { - background-position: -120px -48px; -} - -.icon-font { - background-position: -144px -48px; -} - -.icon-bold { - background-position: -167px -48px; -} - -.icon-italic { - background-position: -192px -48px; -} - -.icon-text-height { - background-position: -216px -48px; -} - -.icon-text-width { - background-position: -240px -48px; -} - -.icon-align-left { - background-position: -264px -48px; -} - -.icon-align-center { - background-position: -288px -48px; -} - -.icon-align-right { - background-position: -312px -48px; -} - -.icon-align-justify { - background-position: -336px -48px; -} - -.icon-list { - background-position: -360px -48px; -} - -.icon-indent-left { - background-position: -384px -48px; -} - -.icon-indent-right { - background-position: -408px -48px; -} - -.icon-facetime-video { - background-position: -432px -48px; -} - -.icon-picture { - background-position: -456px -48px; -} - -.icon-pencil { - background-position: 0 -72px; -} - -.icon-map-marker { - background-position: -24px -72px; -} - -.icon-adjust { - background-position: -48px -72px; -} - -.icon-tint { - background-position: -72px -72px; -} - -.icon-edit { - background-position: -96px -72px; -} - -.icon-share { - background-position: -120px -72px; -} - -.icon-check { - background-position: -144px -72px; -} - -.icon-move { - background-position: -168px -72px; -} - -.icon-step-backward { - background-position: -192px -72px; -} - -.icon-fast-backward { - background-position: -216px -72px; -} - -.icon-backward { - background-position: -240px -72px; -} - -.icon-play { - background-position: -264px -72px; -} - -.icon-pause { - background-position: -288px -72px; -} - -.icon-stop { - background-position: -312px -72px; -} - -.icon-forward { - background-position: -336px -72px; -} - -.icon-fast-forward { - background-position: -360px -72px; -} - -.icon-step-forward { - background-position: -384px -72px; -} - -.icon-eject { - background-position: -408px -72px; -} - -.icon-chevron-left { - background-position: -432px -72px; -} - -.icon-chevron-right { - background-position: -456px -72px; -} - -.icon-plus-sign { - background-position: 0 -96px; -} - -.icon-minus-sign { - background-position: -24px -96px; -} - -.icon-remove-sign { - background-position: -48px -96px; -} - -.icon-ok-sign { - background-position: -72px -96px; -} - -.icon-question-sign { - background-position: -96px -96px; -} - -.icon-info-sign { - background-position: -120px -96px; -} - -.icon-screenshot { - background-position: -144px -96px; -} - -.icon-remove-circle { - background-position: -168px -96px; -} - -.icon-ok-circle { - background-position: -192px -96px; -} - -.icon-ban-circle { - background-position: -216px -96px; -} - -.icon-arrow-left { - background-position: -240px -96px; -} - -.icon-arrow-right { - background-position: -264px -96px; -} - -.icon-arrow-up { - background-position: -289px -96px; -} - -.icon-arrow-down { - background-position: -312px -96px; -} - -.icon-share-alt { - background-position: -336px -96px; -} - -.icon-resize-full { - background-position: -360px -96px; -} - -.icon-resize-small { - background-position: -384px -96px; -} - -.icon-plus { - background-position: -408px -96px; -} - -.icon-minus { - background-position: -433px -96px; -} - -.icon-asterisk { - background-position: -456px -96px; -} - -.icon-exclamation-sign { - background-position: 0 -120px; -} - -.icon-gift { - background-position: -24px -120px; -} - -.icon-leaf { - background-position: -48px -120px; -} - -.icon-fire { - background-position: -72px -120px; -} - -.icon-eye-open { - background-position: -96px -120px; -} - -.icon-eye-close { - background-position: -120px -120px; -} - -.icon-warning-sign { - background-position: -144px -120px; -} - -.icon-plane { - background-position: -168px -120px; -} - -.icon-calendar { - background-position: -192px -120px; -} - -.icon-random { - width: 16px; - background-position: -216px -120px; -} - -.icon-comment { - background-position: -240px -120px; -} - -.icon-magnet { - background-position: -264px -120px; -} - -.icon-chevron-up { - background-position: -288px -120px; -} - -.icon-chevron-down { - background-position: -313px -119px; -} - -.icon-retweet { - background-position: -336px -120px; -} - -.icon-shopping-cart { - background-position: -360px -120px; -} - -.icon-folder-close { - width: 16px; - background-position: -384px -120px; -} - -.icon-folder-open { - width: 16px; - background-position: -408px -120px; -} - -.icon-resize-vertical { - background-position: -432px -119px; -} - -.icon-resize-horizontal { - background-position: -456px -118px; -} - -.icon-hdd { - background-position: 0 -144px; -} - -.icon-bullhorn { - background-position: -24px -144px; -} - -.icon-bell { - background-position: -48px -144px; -} - -.icon-certificate { - background-position: -72px -144px; -} - -.icon-thumbs-up { - background-position: -96px -144px; -} - -.icon-thumbs-down { - background-position: -120px -144px; -} - -.icon-hand-right { - background-position: -144px -144px; -} - -.icon-hand-left { - background-position: -168px -144px; -} - -.icon-hand-up { - background-position: -192px -144px; -} - -.icon-hand-down { - background-position: -216px -144px; -} - -.icon-circle-arrow-right { - background-position: -240px -144px; -} - -.icon-circle-arrow-left { - background-position: -264px -144px; -} - -.icon-circle-arrow-up { - background-position: -288px -144px; -} - -.icon-circle-arrow-down { - background-position: -312px -144px; -} - -.icon-globe { - background-position: -336px -144px; -} - -.icon-wrench { - background-position: -360px -144px; -} - -.icon-tasks { - background-position: -384px -144px; -} - -.icon-filter { - background-position: -408px -144px; -} - -.icon-briefcase { - background-position: -432px -144px; -} - -.icon-fullscreen { - background-position: -456px -144px; -} - -.dropup, -.dropdown { - position: relative; -} - -.dropdown-toggle { - *margin-bottom: -3px; -} - -.dropdown-toggle:active, -.open .dropdown-toggle { - outline: 0; -} - -.caret { - display: inline-block; - width: 0; - height: 0; - vertical-align: top; - border-top: 4px solid #000000; - border-right: 4px solid transparent; - border-left: 4px solid transparent; - content: ""; -} - -.dropdown .caret { - margin-top: 8px; - margin-left: 2px; -} - -.dropdown-menu { - position: absolute; - top: 100%; - left: 0; - z-index: 1000; - display: none; - float: left; - min-width: 160px; - padding: 5px 0; - margin: 2px 0 0; - list-style: none; - background-color: #ffffff; - border: 1px solid #ccc; - border: 1px solid rgba(0, 0, 0, 0.2); - *border-right-width: 2px; - *border-bottom-width: 2px; - -webkit-border-radius: 6px; - -moz-border-radius: 6px; - border-radius: 6px; - -webkit-box-shadow: 0 5px 10px rgba(0, 0, 0, 0.2); - -moz-box-shadow: 0 5px 10px rgba(0, 0, 0, 0.2); - box-shadow: 0 5px 10px rgba(0, 0, 0, 0.2); - -webkit-background-clip: padding-box; - -moz-background-clip: padding; - background-clip: padding-box; -} - -.dropdown-menu.pull-right { - right: 0; - left: auto; -} - -.dropdown-menu .divider { - *width: 100%; - height: 1px; - margin: 9px 1px; - *margin: -5px 0 5px; - overflow: hidden; - background-color: #e5e5e5; - border-bottom: 1px solid #ffffff; -} - -.dropdown-menu > li > a { - display: block; - padding: 3px 20px; - clear: both; - font-weight: normal; - line-height: 20px; - color: #333333; - white-space: nowrap; -} - -.dropdown-menu > li > a:hover, -.dropdown-menu > li > a:focus, -.dropdown-submenu:hover > a, -.dropdown-submenu:focus > a { - color: #ffffff; - text-decoration: none; - background-color: #0081c2; - background-image: -moz-linear-gradient(top, #0088cc, #0077b3); - background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#0088cc), to(#0077b3)); - background-image: -webkit-linear-gradient(top, #0088cc, #0077b3); - background-image: -o-linear-gradient(top, #0088cc, #0077b3); - background-image: linear-gradient(to bottom, #0088cc, #0077b3); - background-repeat: repeat-x; - filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff0088cc', endColorstr='#ff0077b3', GradientType=0); -} - -.dropdown-menu > .active > a, -.dropdown-menu > .active > a:hover, -.dropdown-menu > .active > a:focus { - color: #ffffff; - text-decoration: none; - background-color: #0081c2; - background-image: -moz-linear-gradient(top, #0088cc, #0077b3); - background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#0088cc), to(#0077b3)); - background-image: -webkit-linear-gradient(top, #0088cc, #0077b3); - background-image: -o-linear-gradient(top, #0088cc, #0077b3); - background-image: linear-gradient(to bottom, #0088cc, #0077b3); - background-repeat: repeat-x; - outline: 0; - filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff0088cc', endColorstr='#ff0077b3', GradientType=0); -} - -.dropdown-menu > .disabled > a, -.dropdown-menu > .disabled > a:hover, -.dropdown-menu > .disabled > a:focus { - color: #999999; -} - -.dropdown-menu > .disabled > a:hover, -.dropdown-menu > .disabled > a:focus { - text-decoration: none; - cursor: default; - background-color: transparent; - background-image: none; - filter: progid:DXImageTransform.Microsoft.gradient(enabled=false); -} - -.open { - *z-index: 1000; -} - -.open > .dropdown-menu { - display: block; -} - -.dropdown-backdrop { - position: fixed; - top: 0; - right: 0; - bottom: 0; - left: 0; - z-index: 990; -} - -.pull-right > .dropdown-menu { - right: 0; - left: auto; -} - -.dropup .caret, -.navbar-fixed-bottom .dropdown .caret { - border-top: 0; - border-bottom: 4px solid #000000; - content: ""; -} - -.dropup .dropdown-menu, -.navbar-fixed-bottom .dropdown .dropdown-menu { - top: auto; - bottom: 100%; - margin-bottom: 1px; -} - -.dropdown-submenu { - position: relative; -} - -.dropdown-submenu > .dropdown-menu { - top: 0; - left: 100%; - margin-top: -6px; - margin-left: -1px; - -webkit-border-radius: 0 6px 6px 6px; - -moz-border-radius: 0 6px 6px 6px; - border-radius: 0 6px 6px 6px; -} - -.dropdown-submenu:hover > .dropdown-menu { - display: block; -} - -.dropup .dropdown-submenu > .dropdown-menu { - top: auto; - bottom: 0; - margin-top: 0; - margin-bottom: -2px; - -webkit-border-radius: 5px 5px 5px 0; - -moz-border-radius: 5px 5px 5px 0; - border-radius: 5px 5px 5px 0; -} - -.dropdown-submenu > a:after { - display: block; - float: right; - width: 0; - height: 0; - margin-top: 5px; - margin-right: -10px; - border-color: transparent; - border-left-color: #cccccc; - border-style: solid; - border-width: 5px 0 5px 5px; - content: " "; -} - -.dropdown-submenu:hover > a:after { - border-left-color: #ffffff; -} - -.dropdown-submenu.pull-left { - float: none; -} - -.dropdown-submenu.pull-left > .dropdown-menu { - left: -100%; - margin-left: 10px; - -webkit-border-radius: 6px 0 6px 6px; - -moz-border-radius: 6px 0 6px 6px; - border-radius: 6px 0 6px 6px; -} - -.dropdown .dropdown-menu .nav-header { - padding-right: 20px; - padding-left: 20px; -} - -.typeahead { - z-index: 1051; - margin-top: 2px; - -webkit-border-radius: 4px; - -moz-border-radius: 4px; - border-radius: 4px; -} - -.well { - min-height: 20px; - padding: 19px; - margin-bottom: 20px; - background-color: #f5f5f5; - border: 1px solid #e3e3e3; - -webkit-border-radius: 4px; - -moz-border-radius: 4px; - border-radius: 4px; - -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.05); - -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.05); - box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.05); -} - -.well blockquote { - border-color: #ddd; - border-color: rgba(0, 0, 0, 0.15); -} - -.well-large { - padding: 24px; - -webkit-border-radius: 6px; - -moz-border-radius: 6px; - border-radius: 6px; -} - -.well-small { - padding: 9px; - -webkit-border-radius: 3px; - -moz-border-radius: 3px; - border-radius: 3px; -} - -.fade { - opacity: 0; - -webkit-transition: opacity 0.15s linear; - -moz-transition: opacity 0.15s linear; - -o-transition: opacity 0.15s linear; - transition: opacity 0.15s linear; -} - -.fade.in { - opacity: 1; -} - -.collapse { - position: relative; - height: 0; - overflow: hidden; - -webkit-transition: height 0.35s ease; - -moz-transition: height 0.35s ease; - -o-transition: height 0.35s ease; - transition: height 0.35s ease; -} - -.collapse.in { - height: auto; -} - -.close { - float: right; - font-size: 20px; - font-weight: bold; - line-height: 20px; - color: #000000; - text-shadow: 0 1px 0 #ffffff; - opacity: 0.2; - filter: alpha(opacity=20); -} - -.close:hover, -.close:focus { - color: #000000; - text-decoration: none; - cursor: pointer; - opacity: 0.4; - filter: alpha(opacity=40); -} - -button.close { - padding: 0; - cursor: pointer; - background: transparent; - border: 0; - -webkit-appearance: none; -} - -.btn { - display: inline-block; - *display: inline; - padding: 4px 12px; - margin-bottom: 0; - *margin-left: .3em; - font-size: 14px; - line-height: 20px; - color: #333333; - text-align: center; - text-shadow: 0 1px 1px rgba(255, 255, 255, 0.75); - vertical-align: middle; - cursor: pointer; - background-color: #f5f5f5; - *background-color: #e6e6e6; - background-image: -moz-linear-gradient(top, #ffffff, #e6e6e6); - background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#ffffff), to(#e6e6e6)); - background-image: -webkit-linear-gradient(top, #ffffff, #e6e6e6); - background-image: -o-linear-gradient(top, #ffffff, #e6e6e6); - background-image: linear-gradient(to bottom, #ffffff, #e6e6e6); - background-repeat: repeat-x; - border: 1px solid #cccccc; - *border: 0; - border-color: #e6e6e6 #e6e6e6 #bfbfbf; - border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); - border-bottom-color: #b3b3b3; - -webkit-border-radius: 4px; - -moz-border-radius: 4px; - border-radius: 4px; - filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffffffff', endColorstr='#ffe6e6e6', GradientType=0); - filter: progid:DXImageTransform.Microsoft.gradient(enabled=false); - *zoom: 1; - -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.2), 0 1px 2px rgba(0, 0, 0, 0.05); - -moz-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.2), 0 1px 2px rgba(0, 0, 0, 0.05); - box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.2), 0 1px 2px rgba(0, 0, 0, 0.05); -} - -.btn:hover, -.btn:focus, -.btn:active, -.btn.active, -.btn.disabled, -.btn[disabled] { - color: #333333; - background-color: #e6e6e6; - *background-color: #d9d9d9; -} - -.btn:active, -.btn.active { - background-color: #cccccc \9; -} - -.btn:first-child { - *margin-left: 0; -} - -.btn:hover, -.btn:focus { - color: #333333; - text-decoration: none; - background-position: 0 -15px; - -webkit-transition: background-position 0.1s linear; - -moz-transition: background-position 0.1s linear; - -o-transition: background-position 0.1s linear; - transition: background-position 0.1s linear; -} - -.btn:focus { - outline: thin dotted #333; - outline: 5px auto -webkit-focus-ring-color; - outline-offset: -2px; -} - -.btn.active, -.btn:active { - background-image: none; - outline: 0; - -webkit-box-shadow: inset 0 2px 4px rgba(0, 0, 0, 0.15), 0 1px 2px rgba(0, 0, 0, 0.05); - -moz-box-shadow: inset 0 2px 4px rgba(0, 0, 0, 0.15), 0 1px 2px rgba(0, 0, 0, 0.05); - box-shadow: inset 0 2px 4px rgba(0, 0, 0, 0.15), 0 1px 2px rgba(0, 0, 0, 0.05); -} - -.btn.disabled, -.btn[disabled] { - cursor: default; - background-image: none; - opacity: 0.65; - filter: alpha(opacity=65); - -webkit-box-shadow: none; - -moz-box-shadow: none; - box-shadow: none; -} - -.btn-large { - padding: 11px 19px; - font-size: 17.5px; - -webkit-border-radius: 6px; - -moz-border-radius: 6px; - border-radius: 6px; -} - -.btn-large [class^="icon-"], -.btn-large [class*=" icon-"] { - margin-top: 4px; -} - -.btn-small { - padding: 2px 10px; - font-size: 11.9px; - -webkit-border-radius: 3px; - -moz-border-radius: 3px; - border-radius: 3px; -} - -.btn-small [class^="icon-"], -.btn-small [class*=" icon-"] { - margin-top: 0; -} - -.btn-mini [class^="icon-"], -.btn-mini [class*=" icon-"] { - margin-top: -1px; -} - -.btn-mini { - padding: 0 6px; - font-size: 10.5px; - -webkit-border-radius: 3px; - -moz-border-radius: 3px; - border-radius: 3px; -} - -.btn-block { - display: block; - width: 100%; - padding-right: 0; - padding-left: 0; - -webkit-box-sizing: border-box; - -moz-box-sizing: border-box; - box-sizing: border-box; -} - -.btn-block + .btn-block { - margin-top: 5px; -} - -input[type="submit"].btn-block, -input[type="reset"].btn-block, -input[type="button"].btn-block { - width: 100%; -} - -.btn-primary.active, -.btn-warning.active, -.btn-danger.active, -.btn-success.active, -.btn-info.active, -.btn-inverse.active { - color: rgba(255, 255, 255, 0.75); -} - -.btn-primary { - color: #ffffff; - text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); - background-color: #006dcc; - *background-color: #0044cc; - background-image: -moz-linear-gradient(top, #0088cc, #0044cc); - background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#0088cc), to(#0044cc)); - background-image: -webkit-linear-gradient(top, #0088cc, #0044cc); - background-image: -o-linear-gradient(top, #0088cc, #0044cc); - background-image: linear-gradient(to bottom, #0088cc, #0044cc); - background-repeat: repeat-x; - border-color: #0044cc #0044cc #002a80; - border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); - filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff0088cc', endColorstr='#ff0044cc', GradientType=0); - filter: progid:DXImageTransform.Microsoft.gradient(enabled=false); -} - -.btn-primary:hover, -.btn-primary:focus, -.btn-primary:active, -.btn-primary.active, -.btn-primary.disabled, -.btn-primary[disabled] { - color: #ffffff; - background-color: #0044cc; - *background-color: #003bb3; -} - -.btn-primary:active, -.btn-primary.active { - background-color: #003399 \9; -} - -.btn-warning { - color: #ffffff; - text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); - background-color: #faa732; - *background-color: #f89406; - background-image: -moz-linear-gradient(top, #fbb450, #f89406); - background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#fbb450), to(#f89406)); - background-image: -webkit-linear-gradient(top, #fbb450, #f89406); - background-image: -o-linear-gradient(top, #fbb450, #f89406); - background-image: linear-gradient(to bottom, #fbb450, #f89406); - background-repeat: repeat-x; - border-color: #f89406 #f89406 #ad6704; - border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); - 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-button.btn, -input[type="submit"].btn { - *padding-top: 3px; - *padding-bottom: 3px; -} - -button.btn::-moz-focus-inner, -input[type="submit"].btn::-moz-focus-inner { - padding: 0; - border: 0; -} - -button.btn.btn-large, -input[type="submit"].btn.btn-large { - *padding-top: 7px; - *padding-bottom: 7px; -} - -button.btn.btn-small, -input[type="submit"].btn.btn-small { - *padding-top: 3px; - *padding-bottom: 3px; -} - -button.btn.btn-mini, -input[type="submit"].btn.btn-mini { - *padding-top: 1px; - *padding-bottom: 1px; -} - -.btn-link, -.btn-link:active, -.btn-link[disabled] { - background-color: transparent; - background-image: none; - -webkit-box-shadow: none; - -moz-box-shadow: none; - box-shadow: none; -} - -.btn-link { - color: #0088cc; - cursor: pointer; - border-color: transparent; - -webkit-border-radius: 0; - -moz-border-radius: 0; - border-radius: 0; -} - -.btn-link:hover, -.btn-link:focus { - color: #005580; - text-decoration: underline; - background-color: transparent; -} 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.btn-large { - font-size: 17.5px; -} - -.btn-group > .btn:first-child { - margin-left: 0; - -webkit-border-bottom-left-radius: 4px; - border-bottom-left-radius: 4px; - -webkit-border-top-left-radius: 4px; - border-top-left-radius: 4px; - -moz-border-radius-bottomleft: 4px; - -moz-border-radius-topleft: 4px; -} - -.btn-group > .btn:last-child, -.btn-group > .dropdown-toggle { - -webkit-border-top-right-radius: 4px; - border-top-right-radius: 4px; - -webkit-border-bottom-right-radius: 4px; - border-bottom-right-radius: 4px; - -moz-border-radius-topright: 4px; - -moz-border-radius-bottomright: 4px; -} - -.btn-group > .btn.large:first-child { - margin-left: 0; - -webkit-border-bottom-left-radius: 6px; - border-bottom-left-radius: 6px; - -webkit-border-top-left-radius: 6px; - border-top-left-radius: 6px; - -moz-border-radius-bottomleft: 6px; - -moz-border-radius-topleft: 6px; -} - -.btn-group > .btn.large:last-child, -.btn-group > .large.dropdown-toggle { - -webkit-border-top-right-radius: 6px; - border-top-right-radius: 6px; - -webkit-border-bottom-right-radius: 6px; - border-bottom-right-radius: 6px; - -moz-border-radius-topright: 6px; - -moz-border-radius-bottomright: 6px; -} - -.btn-group > .btn:hover, -.btn-group > .btn:focus, -.btn-group > .btn:active, -.btn-group > .btn.active { - z-index: 2; -} - -.btn-group .dropdown-toggle:active, -.btn-group.open .dropdown-toggle { - outline: 0; -} - -.btn-group > .btn + .dropdown-toggle { - *padding-top: 5px; - padding-right: 8px; - *padding-bottom: 5px; - padding-left: 8px; - -webkit-box-shadow: inset 1px 0 0 rgba(255, 255, 255, 0.125), inset 0 1px 0 rgba(255, 255, 255, 0.2), 0 1px 2px rgba(0, 0, 0, 0.05); - -moz-box-shadow: inset 1px 0 0 rgba(255, 255, 255, 0.125), inset 0 1px 0 rgba(255, 255, 255, 0.2), 0 1px 2px rgba(0, 0, 0, 0.05); - box-shadow: inset 1px 0 0 rgba(255, 255, 255, 0.125), inset 0 1px 0 rgba(255, 255, 255, 0.2), 0 1px 2px rgba(0, 0, 0, 0.05); -} - -.btn-group > .btn-mini + .dropdown-toggle { - *padding-top: 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overflow: hidden; - background-color: #e5e5e5; - border-bottom: 1px solid #ffffff; -} - -.nav-tabs, -.nav-pills { - *zoom: 1; -} - -.nav-tabs:before, -.nav-pills:before, -.nav-tabs:after, -.nav-pills:after { - display: table; - line-height: 0; - content: ""; -} - -.nav-tabs:after, -.nav-pills:after { - clear: both; -} - -.nav-tabs > li, -.nav-pills > li { - float: left; -} - -.nav-tabs > li > a, -.nav-pills > li > a { - padding-right: 12px; - padding-left: 12px; - margin-right: 2px; - line-height: 14px; -} - -.nav-tabs { - border-bottom: 1px solid #ddd; -} - -.nav-tabs > li { - margin-bottom: -1px; -} - -.nav-tabs > li > a { - padding-top: 8px; - padding-bottom: 8px; - line-height: 20px; - border: 1px solid transparent; - -webkit-border-radius: 4px 4px 0 0; - -moz-border-radius: 4px 4px 0 0; - border-radius: 4px 4px 0 0; -} - -.nav-tabs > li > a:hover, -.nav-tabs > li > a:focus { - border-color: #eeeeee #eeeeee #dddddd; -} - -.nav-tabs > .active > a, -.nav-tabs > .active > a:hover, 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.dropdown-toggle:focus .caret { - border-top-color: #005580; - border-bottom-color: #005580; -} - -/* move down carets for tabs */ - -.nav-tabs .dropdown-toggle .caret { - margin-top: 8px; -} - -.nav .active .dropdown-toggle .caret { - border-top-color: #fff; - border-bottom-color: #fff; -} - -.nav-tabs .active .dropdown-toggle .caret { - border-top-color: #555555; - border-bottom-color: #555555; -} - -.nav > .dropdown.active > a:hover, -.nav > .dropdown.active > a:focus { - cursor: pointer; -} - -.nav-tabs .open .dropdown-toggle, -.nav-pills .open .dropdown-toggle, -.nav > li.dropdown.open.active > a:hover, -.nav > li.dropdown.open.active > a:focus { - color: #ffffff; - background-color: #999999; - border-color: #999999; -} - -.nav li.dropdown.open .caret, -.nav li.dropdown.open.active .caret, -.nav li.dropdown.open a:hover .caret, -.nav li.dropdown.open a:focus .caret { - border-top-color: #ffffff; - border-bottom-color: #ffffff; - opacity: 1; - filter: alpha(opacity=100); -} - 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> .nav-tabs > .active > a, -.tabs-below > .nav-tabs > .active > a:hover, -.tabs-below > .nav-tabs > .active > a:focus { - border-color: transparent #ddd #ddd #ddd; -} - -.tabs-left > .nav-tabs > li, -.tabs-right > .nav-tabs > li { - float: none; -} - -.tabs-left > .nav-tabs > li > a, -.tabs-right > .nav-tabs > li > a { - min-width: 74px; - margin-right: 0; - margin-bottom: 3px; -} - -.tabs-left > .nav-tabs { - float: left; - margin-right: 19px; - border-right: 1px solid #ddd; -} - -.tabs-left > .nav-tabs > li > a { - margin-right: -1px; - -webkit-border-radius: 4px 0 0 4px; - -moz-border-radius: 4px 0 0 4px; - border-radius: 4px 0 0 4px; -} - -.tabs-left > .nav-tabs > li > a:hover, -.tabs-left > .nav-tabs > li > a:focus { - border-color: #eeeeee #dddddd #eeeeee #eeeeee; -} - -.tabs-left > .nav-tabs .active > a, -.tabs-left > .nav-tabs .active > a:hover, -.tabs-left > .nav-tabs .active > a:focus { - border-color: #ddd transparent #ddd #ddd; - *border-right-color: #ffffff; -} - -.tabs-right > .nav-tabs { - float: right; - margin-left: 19px; - border-left: 1px solid #ddd; -} - -.tabs-right > .nav-tabs > li > a { - margin-left: -1px; - -webkit-border-radius: 0 4px 4px 0; - -moz-border-radius: 0 4px 4px 0; - border-radius: 0 4px 4px 0; -} - -.tabs-right > .nav-tabs > li > a:hover, -.tabs-right > .nav-tabs > li > a:focus { - border-color: #eeeeee #eeeeee #eeeeee #dddddd; -} - -.tabs-right > .nav-tabs .active > a, -.tabs-right > .nav-tabs .active > a:hover, -.tabs-right > .nav-tabs .active > a:focus { - border-color: #ddd #ddd #ddd transparent; - *border-left-color: #ffffff; -} - -.nav > .disabled > a { - color: #999999; -} - -.nav > .disabled > a:hover, -.nav > .disabled > a:focus { - text-decoration: none; - cursor: default; - background-color: transparent; -} - -.navbar { - *position: relative; - *z-index: 2; - margin-bottom: 20px; - overflow: visible; -} - -.navbar-inner { - min-height: 40px; - padding-right: 20px; - padding-left: 20px; - background-color: #fafafa; - background-image: -moz-linear-gradient(top, #ffffff, #f2f2f2); - background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#ffffff), to(#f2f2f2)); - background-image: -webkit-linear-gradient(top, #ffffff, #f2f2f2); - background-image: -o-linear-gradient(top, #ffffff, #f2f2f2); - background-image: linear-gradient(to bottom, #ffffff, #f2f2f2); - background-repeat: repeat-x; - border: 1px solid #d4d4d4; - -webkit-border-radius: 4px; - -moz-border-radius: 4px; - border-radius: 4px; - filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffffffff', endColorstr='#fff2f2f2', GradientType=0); - *zoom: 1; - -webkit-box-shadow: 0 1px 4px rgba(0, 0, 0, 0.065); - -moz-box-shadow: 0 1px 4px rgba(0, 0, 0, 0.065); - box-shadow: 0 1px 4px rgba(0, 0, 0, 0.065); -} - -.navbar-inner:before, -.navbar-inner:after { - display: table; - line-height: 0; - content: ""; -} - -.navbar-inner:after { - clear: both; -} - -.navbar .container { - width: auto; -} - -.nav-collapse.collapse { - height: auto; - overflow: visible; -} - -.navbar .brand { - display: block; - float: left; - padding: 10px 20px 10px; - margin-left: -20px; - font-size: 20px; - font-weight: 200; - color: #777777; - text-shadow: 0 1px 0 #ffffff; -} - -.navbar .brand:hover, -.navbar .brand:focus { - text-decoration: none; -} - -.navbar-text { - margin-bottom: 0; - line-height: 40px; - color: #777777; -} - -.navbar-link { - color: #777777; -} - -.navbar-link:hover, -.navbar-link:focus { - color: #333333; -} - -.navbar .divider-vertical { - height: 40px; - margin: 0 9px; - border-right: 1px solid #ffffff; - border-left: 1px solid #f2f2f2; -} - -.navbar .btn, -.navbar .btn-group { - margin-top: 5px; -} - -.navbar .btn-group .btn, -.navbar .input-prepend .btn, -.navbar .input-append .btn, -.navbar .input-prepend .btn-group, -.navbar .input-append .btn-group { - margin-top: 0; -} - -.navbar-form { - margin-bottom: 0; - *zoom: 1; -} - -.navbar-form:before, -.navbar-form:after { - display: table; - line-height: 0; - content: ""; -} - -.navbar-form:after { - clear: both; -} - -.navbar-form input, -.navbar-form select, -.navbar-form .radio, -.navbar-form .checkbox { - margin-top: 5px; -} - -.navbar-form input, -.navbar-form select, -.navbar-form .btn { - display: inline-block; - margin-bottom: 0; -} - -.navbar-form input[type="image"], -.navbar-form input[type="checkbox"], -.navbar-form input[type="radio"] { - margin-top: 3px; -} - -.navbar-form .input-append, -.navbar-form .input-prepend { - margin-top: 5px; - white-space: nowrap; -} - -.navbar-form .input-append input, -.navbar-form .input-prepend input { - margin-top: 0; -} - -.navbar-search { - position: relative; - float: left; - margin-top: 5px; - margin-bottom: 0; -} - -.navbar-search .search-query { - padding: 4px 14px; - margin-bottom: 0; - font-family: "Helvetica Neue", Helvetica, Arial, sans-serif; - font-size: 13px; - font-weight: normal; - line-height: 1; - -webkit-border-radius: 15px; - -moz-border-radius: 15px; - border-radius: 15px; -} - -.navbar-static-top { - position: static; - margin-bottom: 0; -} - -.navbar-static-top .navbar-inner { - -webkit-border-radius: 0; - -moz-border-radius: 0; - border-radius: 0; -} - -.navbar-fixed-top, -.navbar-fixed-bottom { - position: fixed; - right: 0; - left: 0; - z-index: 1030; - margin-bottom: 0; -} - -.navbar-fixed-top .navbar-inner, -.navbar-static-top .navbar-inner { - border-width: 0 0 1px; -} - -.navbar-fixed-bottom .navbar-inner { - border-width: 1px 0 0; -} - -.navbar-fixed-top .navbar-inner, -.navbar-fixed-bottom .navbar-inner { - padding-right: 0; - padding-left: 0; - -webkit-border-radius: 0; - -moz-border-radius: 0; - border-radius: 0; -} - -.navbar-static-top .container, -.navbar-fixed-top .container, -.navbar-fixed-bottom .container { - width: 940px; -} - -.navbar-fixed-top { - top: 0; -} - -.navbar-fixed-top .navbar-inner, -.navbar-static-top .navbar-inner { - -webkit-box-shadow: 0 1px 10px rgba(0, 0, 0, 0.1); - -moz-box-shadow: 0 1px 10px 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text-decoration: none; - background-color: #e5e5e5; - -webkit-box-shadow: inset 0 3px 8px rgba(0, 0, 0, 0.125); - -moz-box-shadow: inset 0 3px 8px rgba(0, 0, 0, 0.125); - box-shadow: inset 0 3px 8px rgba(0, 0, 0, 0.125); -} - -.navbar .btn-navbar { - display: none; - float: right; - padding: 7px 10px; - margin-right: 5px; - margin-left: 5px; - color: #ffffff; - text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); - background-color: #ededed; - *background-color: #e5e5e5; - background-image: -moz-linear-gradient(top, #f2f2f2, #e5e5e5); - background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#f2f2f2), to(#e5e5e5)); - background-image: -webkit-linear-gradient(top, #f2f2f2, #e5e5e5); - background-image: -o-linear-gradient(top, #f2f2f2, #e5e5e5); - background-image: linear-gradient(to bottom, #f2f2f2, #e5e5e5); - background-repeat: repeat-x; - border-color: #e5e5e5 #e5e5e5 #bfbfbf; - border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); - filter: 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border-radius: 1px; - -webkit-box-shadow: 0 1px 0 rgba(0, 0, 0, 0.25); - -moz-box-shadow: 0 1px 0 rgba(0, 0, 0, 0.25); - box-shadow: 0 1px 0 rgba(0, 0, 0, 0.25); -} - -.btn-navbar .icon-bar + .icon-bar { - margin-top: 3px; -} - -.navbar .nav > li > .dropdown-menu:before { - position: absolute; - top: -7px; - left: 9px; - display: inline-block; - border-right: 7px solid transparent; - border-bottom: 7px solid #ccc; - border-left: 7px solid transparent; - border-bottom-color: rgba(0, 0, 0, 0.2); - content: ''; -} - -.navbar .nav > li > .dropdown-menu:after { - position: absolute; - top: -6px; - left: 10px; - display: inline-block; - border-right: 6px solid transparent; - border-bottom: 6px solid #ffffff; - border-left: 6px solid transparent; - content: ''; -} - -.navbar-fixed-bottom .nav > li > .dropdown-menu:before { - top: auto; - bottom: -7px; - border-top: 7px solid #ccc; - border-bottom: 0; - border-top-color: rgba(0, 0, 0, 0.2); -} - -.navbar-fixed-bottom .nav > li > .dropdown-menu:after { - top: auto; - bottom: -6px; - border-top: 6px solid #ffffff; - border-bottom: 0; -} - -.navbar .nav li.dropdown > a:hover .caret, -.navbar .nav li.dropdown > a:focus .caret { - border-top-color: #333333; - border-bottom-color: #333333; -} - -.navbar .nav li.dropdown.open > .dropdown-toggle, -.navbar .nav li.dropdown.active > .dropdown-toggle, -.navbar .nav li.dropdown.open.active > .dropdown-toggle { - color: #555555; - background-color: #e5e5e5; -} - -.navbar .nav li.dropdown > .dropdown-toggle .caret { - border-top-color: #777777; - border-bottom-color: #777777; -} - -.navbar .nav li.dropdown.open > .dropdown-toggle .caret, -.navbar .nav li.dropdown.active > .dropdown-toggle .caret, -.navbar .nav li.dropdown.open.active > .dropdown-toggle .caret { - border-top-color: #555555; - border-bottom-color: #555555; -} - -.navbar .pull-right > li > .dropdown-menu, -.navbar .nav > li > .dropdown-menu.pull-right { - right: 0; - left: auto; -} - -.navbar .pull-right > li > .dropdown-menu:before, -.navbar .nav > li > .dropdown-menu.pull-right:before { - right: 12px; - left: auto; -} - -.navbar .pull-right > li > .dropdown-menu:after, -.navbar .nav > li > .dropdown-menu.pull-right:after { - right: 13px; - left: auto; -} - -.navbar .pull-right > li > .dropdown-menu .dropdown-menu, -.navbar .nav > li > .dropdown-menu.pull-right .dropdown-menu { - right: 100%; - left: auto; - margin-right: -1px; - margin-left: 0; - -webkit-border-radius: 6px 0 6px 6px; - -moz-border-radius: 6px 0 6px 6px; - border-radius: 6px 0 6px 6px; -} - -.navbar-inverse .navbar-inner { - background-color: #1b1b1b; - background-image: -moz-linear-gradient(top, #222222, #111111); - background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#222222), to(#111111)); - background-image: -webkit-linear-gradient(top, #222222, #111111); - background-image: -o-linear-gradient(top, #222222, #111111); - background-image: linear-gradient(to bottom, #222222, #111111); - background-repeat: 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#ffffff; -} - -.navbar-inverse .divider-vertical { - border-right-color: #222222; - border-left-color: #111111; -} - -.navbar-inverse .nav li.dropdown.open > .dropdown-toggle, -.navbar-inverse .nav li.dropdown.active > .dropdown-toggle, -.navbar-inverse .nav li.dropdown.open.active > .dropdown-toggle { - color: #ffffff; - background-color: #111111; -} - -.navbar-inverse .nav li.dropdown > a:hover .caret, -.navbar-inverse .nav li.dropdown > a:focus .caret { - border-top-color: #ffffff; - border-bottom-color: #ffffff; -} - -.navbar-inverse .nav li.dropdown > .dropdown-toggle .caret { - border-top-color: #999999; - border-bottom-color: #999999; -} - -.navbar-inverse .nav li.dropdown.open > .dropdown-toggle .caret, -.navbar-inverse .nav li.dropdown.active > .dropdown-toggle .caret, -.navbar-inverse .nav li.dropdown.open.active > .dropdown-toggle .caret { - border-top-color: #ffffff; - border-bottom-color: #ffffff; -} - -.navbar-inverse .navbar-search .search-query { - color: #ffffff; - background-color: #515151; - border-color: #111111; - -webkit-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.1), 0 1px 0 rgba(255, 255, 255, 0.15); - -moz-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.1), 0 1px 0 rgba(255, 255, 255, 0.15); - box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.1), 0 1px 0 rgba(255, 255, 255, 0.15); - -webkit-transition: none; - -moz-transition: none; - -o-transition: none; - transition: none; -} - -.navbar-inverse .navbar-search .search-query:-moz-placeholder { - color: #cccccc; -} - -.navbar-inverse .navbar-search .search-query:-ms-input-placeholder { - color: #cccccc; -} - -.navbar-inverse .navbar-search .search-query::-webkit-input-placeholder { - color: #cccccc; -} - -.navbar-inverse .navbar-search .search-query:focus, -.navbar-inverse .navbar-search .search-query.focused { - padding: 5px 15px; - color: #333333; - text-shadow: 0 1px 0 #ffffff; - background-color: #ffffff; - border: 0; - outline: 0; - -webkit-box-shadow: 0 0 3px rgba(0, 0, 0, 0.15); - 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.btn-navbar:focus, -.navbar-inverse .btn-navbar:active, -.navbar-inverse .btn-navbar.active, -.navbar-inverse .btn-navbar.disabled, -.navbar-inverse .btn-navbar[disabled] { - color: #ffffff; - background-color: #040404; - *background-color: #000000; -} - -.navbar-inverse .btn-navbar:active, -.navbar-inverse .btn-navbar.active { - background-color: #000000 \9; -} - -.breadcrumb { - padding: 8px 15px; - margin: 0 0 20px; - list-style: none; - background-color: #f5f5f5; - -webkit-border-radius: 4px; - -moz-border-radius: 4px; - border-radius: 4px; -} - -.breadcrumb > li { - display: inline-block; - *display: inline; - text-shadow: 0 1px 0 #ffffff; - *zoom: 1; -} - -.breadcrumb > li > .divider { - padding: 0 5px; - color: #ccc; -} - -.breadcrumb > .active { - color: #999999; -} - -.pagination { - margin: 20px 0; -} - -.pagination ul { - display: inline-block; - *display: inline; - margin-bottom: 0; - margin-left: 0; - -webkit-border-radius: 4px; - -moz-border-radius: 4px; - border-radius: 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a9969993..00000000 Binary files a/themes/bootstrap/static/bootstrap-2.3.2/img/glyphicons-halflings.png and /dev/null differ diff --git a/themes/bootstrap/static/bootstrap-2.3.2/js/bootstrap.js b/themes/bootstrap/static/bootstrap-2.3.2/js/bootstrap.js deleted file mode 100644 index 638bb187..00000000 --- a/themes/bootstrap/static/bootstrap-2.3.2/js/bootstrap.js +++ /dev/null @@ -1,2287 +0,0 @@ -/* =================================================== - * bootstrap-transition.js v2.3.2 - * http://twitter.github.com/bootstrap/javascript.html#transitions - * =================================================== - * Copyright 2012 Twitter, Inc. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - * ========================================================== */ - - -!function ($) { - - "use strict"; // jshint ;_; - - - /* CSS TRANSITION SUPPORT (http://www.modernizr.com/) - * ======================================================= */ - - $(function () { - - $.support.transition = (function () { - - var transitionEnd = (function () { - - var el = document.createElement('bootstrap') - , transEndEventNames = { - 'WebkitTransition' : 'webkitTransitionEnd' - , 'MozTransition' : 'transitionend' - , 'OTransition' : 'oTransitionEnd otransitionend' - , 'transition' : 'transitionend' - } - , name - - for (name in transEndEventNames){ - if (el.style[name] !== undefined) { - return transEndEventNames[name] - } - } - - }()) - - return transitionEnd && { - end: transitionEnd - } - - })() - - }) - -}(window.$jqTheme || window.jQuery); -/* ========================================================== - * bootstrap-alert.js v2.3.2 - * http://twitter.github.com/bootstrap/javascript.html#alerts - * ========================================================== - * Copyright 2012 Twitter, Inc. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - * ========================================================== */ - - -!function ($) { - - "use strict"; // jshint ;_; - - - /* ALERT CLASS DEFINITION - * ====================== */ - - var dismiss = '[data-dismiss="alert"]' - , Alert = function (el) { - $(el).on('click', dismiss, this.close) - } - - Alert.prototype.close = function (e) { - var $this = $(this) - , selector = $this.attr('data-target') - , $parent - - if (!selector) { - selector = $this.attr('href') - selector = selector && selector.replace(/.*(?=#[^\s]*$)/, '') //strip for ie7 - } - - $parent = $(selector) - - e && e.preventDefault() - - $parent.length || ($parent = $this.hasClass('alert') ? $this : $this.parent()) - - $parent.trigger(e = $.Event('close')) - - if (e.isDefaultPrevented()) return - - $parent.removeClass('in') - - function removeElement() { - $parent - .trigger('closed') - .remove() - } - - $.support.transition && $parent.hasClass('fade') ? - $parent.on($.support.transition.end, removeElement) : - removeElement() - } - - - /* ALERT PLUGIN DEFINITION - * ======================= */ - - var old = $.fn.alert - - $.fn.alert = function (option) { - return this.each(function () { - var $this = $(this) - , data = $this.data('alert') - if (!data) $this.data('alert', (data = new Alert(this))) - if (typeof option == 'string') data[option].call($this) - }) - } - - $.fn.alert.Constructor = Alert - - - /* ALERT NO CONFLICT - * ================= */ - - $.fn.alert.noConflict = function () { - $.fn.alert = old - return this - } - - - /* ALERT DATA-API - * ============== */ - - $(document).on('click.alert.data-api', dismiss, Alert.prototype.close) - -}(window.$jqTheme || window.jQuery); -/* ============================================================ - * bootstrap-button.js v2.3.2 - * http://twitter.github.com/bootstrap/javascript.html#buttons - * ============================================================ - * Copyright 2012 Twitter, Inc. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - * ============================================================ */ - - -!function ($) { - - "use strict"; // jshint ;_; - - - /* BUTTON PUBLIC CLASS DEFINITION - * ============================== */ - - var Button = function (element, options) { - this.$element = $(element) - this.options = $.extend({}, $.fn.button.defaults, options) - } - - Button.prototype.setState = function (state) { - var d = 'disabled' - , $el = this.$element - , data = $el.data() - , val = $el.is('input') ? 'val' : 'html' - - state = state + 'Text' - data.resetText || $el.data('resetText', $el[val]()) - - $el[val](data[state] || this.options[state]) - - // push to event loop to allow forms to submit - setTimeout(function () { - state == 'loadingText' ? - $el.addClass(d).attr(d, d) : - $el.removeClass(d).removeAttr(d) - }, 0) - } - - Button.prototype.toggle = function () { - var $parent = this.$element.closest('[data-toggle="buttons-radio"]') - - $parent && $parent - .find('.active') - .removeClass('active') - - this.$element.toggleClass('active') - } - - - /* BUTTON PLUGIN DEFINITION - * ======================== */ - - var old = $.fn.button - - $.fn.button = function (option) { - return this.each(function () { - var $this = $(this) - , data = $this.data('button') - , options = typeof option == 'object' && option - if (!data) $this.data('button', (data = new Button(this, options))) - if (option == 'toggle') data.toggle() - else if (option) data.setState(option) - }) - } - - $.fn.button.defaults = { - loadingText: 'loading...' - } - - $.fn.button.Constructor = Button - - - /* BUTTON NO CONFLICT - * ================== */ - - $.fn.button.noConflict = function () { - $.fn.button = old - return this - } - - - /* BUTTON DATA-API - * =============== */ - - $(document).on('click.button.data-api', '[data-toggle^=button]', function (e) { - var $btn = $(e.target) - if (!$btn.hasClass('btn')) $btn = $btn.closest('.btn') - $btn.button('toggle') - }) - -}(window.$jqTheme || window.jQuery); -/* ========================================================== - * bootstrap-carousel.js v2.3.2 - * http://twitter.github.com/bootstrap/javascript.html#carousel - * ========================================================== - * Copyright 2012 Twitter, Inc. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - * ========================================================== */ - - -!function ($) { - - "use strict"; // jshint ;_; - - - /* CAROUSEL CLASS DEFINITION - * ========================= */ - - var Carousel = function (element, options) { - this.$element = $(element) - this.$indicators = this.$element.find('.carousel-indicators') - this.options = options - this.options.pause == 'hover' && this.$element - .on('mouseenter', $.proxy(this.pause, this)) - .on('mouseleave', $.proxy(this.cycle, this)) - } - - Carousel.prototype = { - - cycle: function (e) { - if (!e) this.paused = false - if (this.interval) clearInterval(this.interval); - this.options.interval - && !this.paused - && (this.interval = setInterval($.proxy(this.next, this), this.options.interval)) - return this - } - - , getActiveIndex: function () { - this.$active = this.$element.find('.item.active') - this.$items = this.$active.parent().children() - return this.$items.index(this.$active) - } - - , to: function (pos) { - var activeIndex = this.getActiveIndex() - , that = this - - if (pos > (this.$items.length - 1) || pos < 0) return - - if (this.sliding) { - return this.$element.one('slid', function () { - that.to(pos) - }) - } - - if (activeIndex == pos) { - return this.pause().cycle() - } - - return this.slide(pos > activeIndex ? 'next' : 'prev', $(this.$items[pos])) - } - - , pause: function (e) { - if (!e) this.paused = true - if (this.$element.find('.next, .prev').length && $.support.transition.end) { - this.$element.trigger($.support.transition.end) - this.cycle(true) - } - clearInterval(this.interval) - this.interval = null - return this - } - - , next: function () { - if (this.sliding) return - return this.slide('next') - } - - , prev: function () { - if (this.sliding) return - return this.slide('prev') - } - - , slide: function (type, next) { - var $active = this.$element.find('.item.active') - , $next = next || $active[type]() - , isCycling = this.interval - , direction = type == 'next' ? 'left' : 'right' - , fallback = type == 'next' ? 'first' : 'last' - , that = this - , e - - this.sliding = true - - isCycling && this.pause() - - $next = $next.length ? $next : this.$element.find('.item')[fallback]() - - e = $.Event('slide', { - relatedTarget: $next[0] - , direction: direction - }) - - if ($next.hasClass('active')) return - - if (this.$indicators.length) { - this.$indicators.find('.active').removeClass('active') - this.$element.one('slid', function () { - var $nextIndicator = $(that.$indicators.children()[that.getActiveIndex()]) - $nextIndicator && $nextIndicator.addClass('active') - }) - } - - if ($.support.transition && this.$element.hasClass('slide')) { - this.$element.trigger(e) - if (e.isDefaultPrevented()) return - $next.addClass(type) - $next[0].offsetWidth // force reflow - $active.addClass(direction) - $next.addClass(direction) - this.$element.one($.support.transition.end, function () { - $next.removeClass([type, direction].join(' ')).addClass('active') - $active.removeClass(['active', direction].join(' ')) - that.sliding = false - setTimeout(function () { that.$element.trigger('slid') }, 0) - }) - } else { - this.$element.trigger(e) - if (e.isDefaultPrevented()) return - $active.removeClass('active') - $next.addClass('active') - this.sliding = false - this.$element.trigger('slid') - } - - isCycling && this.cycle() - - return this - } - - } - - - /* CAROUSEL PLUGIN DEFINITION - * ========================== */ - - var old = $.fn.carousel - - $.fn.carousel = function (option) { - return this.each(function () { - var $this = $(this) - , data = $this.data('carousel') - , options = $.extend({}, $.fn.carousel.defaults, typeof option == 'object' && option) - , action = typeof option == 'string' ? option : options.slide - if (!data) $this.data('carousel', (data = new Carousel(this, options))) - if (typeof option == 'number') data.to(option) - else if (action) data[action]() - else if (options.interval) data.pause().cycle() - }) - } - - $.fn.carousel.defaults = { - interval: 5000 - , pause: 'hover' - } - - $.fn.carousel.Constructor = Carousel - - - /* CAROUSEL NO CONFLICT - * ==================== */ - - $.fn.carousel.noConflict = function () { - $.fn.carousel = old - return this - } - - /* CAROUSEL DATA-API - * ================= */ - - $(document).on('click.carousel.data-api', '[data-slide], [data-slide-to]', function (e) { - var $this = $(this), href - , $target = $($this.attr('data-target') || (href = $this.attr('href')) && href.replace(/.*(?=#[^\s]+$)/, '')) //strip for ie7 - , options = $.extend({}, $target.data(), $this.data()) - , slideIndex - - $target.carousel(options) - - if (slideIndex = $this.attr('data-slide-to')) { - $target.data('carousel').pause().to(slideIndex).cycle() - } - - e.preventDefault() - }) - -}(window.$jqTheme || window.jQuery); -/* ============================================================= - * bootstrap-collapse.js v2.3.2 - * http://twitter.github.com/bootstrap/javascript.html#collapse - * ============================================================= - * Copyright 2012 Twitter, Inc. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - * ============================================================ */ - - -!function ($) { - - "use strict"; // jshint ;_; - - - /* COLLAPSE PUBLIC CLASS DEFINITION - * ================================ */ - - var Collapse = function (element, options) { - this.$element = $(element) - this.options = $.extend({}, $.fn.collapse.defaults, options) - - if (this.options.parent) { - this.$parent = $(this.options.parent) - } - - this.options.toggle && this.toggle() - } - - Collapse.prototype = { - - constructor: Collapse - - , dimension: function () { - var hasWidth = this.$element.hasClass('width') - return hasWidth ? 'width' : 'height' - } - - , show: function () { - var dimension - , scroll - , actives - , hasData - - if (this.transitioning || this.$element.hasClass('in')) return - - dimension = this.dimension() - scroll = $.camelCase(['scroll', dimension].join('-')) - actives = this.$parent && this.$parent.find('> .accordion-group > .in') - - if (actives && actives.length) { - hasData = actives.data('collapse') - if (hasData && hasData.transitioning) return - actives.collapse('hide') - hasData || actives.data('collapse', null) - } - - this.$element[dimension](0) - this.transition('addClass', $.Event('show'), 'shown') - $.support.transition && this.$element[dimension](this.$element[0][scroll]) - } - - , hide: function () { - var dimension - if (this.transitioning || !this.$element.hasClass('in')) return - dimension = this.dimension() - this.reset(this.$element[dimension]()) - this.transition('removeClass', $.Event('hide'), 'hidden') - this.$element[dimension](0) - } - - , reset: function (size) { - var dimension = this.dimension() - - this.$element - .removeClass('collapse') - [dimension](size || 'auto') - [0].offsetWidth - - this.$element[size !== null ? 'addClass' : 'removeClass']('collapse') - - return this - } - - , transition: function (method, startEvent, completeEvent) { - var that = this - , complete = function () { - if (startEvent.type == 'show') that.reset() - that.transitioning = 0 - that.$element.trigger(completeEvent) - } - - this.$element.trigger(startEvent) - - if (startEvent.isDefaultPrevented()) return - - this.transitioning = 1 - - this.$element[method]('in') - - $.support.transition && this.$element.hasClass('collapse') ? - this.$element.one($.support.transition.end, complete) : - complete() - } - - , toggle: function () { - this[this.$element.hasClass('in') ? 'hide' : 'show']() - } - - } - - - /* COLLAPSE PLUGIN DEFINITION - * ========================== */ - - var old = $.fn.collapse - - $.fn.collapse = function (option) { - return this.each(function () { - var $this = $(this) - , data = $this.data('collapse') - , options = $.extend({}, $.fn.collapse.defaults, $this.data(), typeof option == 'object' && option) - if (!data) $this.data('collapse', (data = new Collapse(this, options))) - if (typeof option == 'string') data[option]() - }) - } - - $.fn.collapse.defaults = { - toggle: true - } - - $.fn.collapse.Constructor = Collapse - - - /* COLLAPSE NO CONFLICT - * ==================== */ - - $.fn.collapse.noConflict = function () { - $.fn.collapse = old - return this - } - - - /* COLLAPSE DATA-API - * ================= */ - - $(document).on('click.collapse.data-api', '[data-toggle=collapse]', function (e) { - var $this = $(this), href - , target = $this.attr('data-target') - || e.preventDefault() - || (href = $this.attr('href')) && href.replace(/.*(?=#[^\s]+$)/, '') //strip for ie7 - , option = $(target).data('collapse') ? 'toggle' : $this.data() - $this[$(target).hasClass('in') ? 'addClass' : 'removeClass']('collapsed') - $(target).collapse(option) - }) - -}(window.$jqTheme || window.jQuery); -/* ============================================================ - * bootstrap-dropdown.js v2.3.2 - * http://twitter.github.com/bootstrap/javascript.html#dropdowns - * ============================================================ - * Copyright 2012 Twitter, Inc. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - * ============================================================ */ - - -!function ($) { - - "use strict"; // jshint ;_; - - - /* DROPDOWN CLASS DEFINITION - * ========================= */ - - var toggle = '[data-toggle=dropdown]' - , Dropdown = function (element) { - var $el = $(element).on('click.dropdown.data-api', this.toggle) - $('html').on('click.dropdown.data-api', function () { - $el.parent().removeClass('open') - }) - } - - Dropdown.prototype = { - - constructor: Dropdown - - , toggle: function (e) { - var $this = $(this) - , $parent - , isActive - - if ($this.is('.disabled, :disabled')) return - - $parent = getParent($this) - - isActive = $parent.hasClass('open') - - clearMenus() - - if (!isActive) { - if ('ontouchstart' in document.documentElement) { - // if mobile we we use a backdrop because click events don't delegate - $('
        ').insertBefore($(this)).on('click', clearMenus) - } - $parent.toggleClass('open') - } - - $this.focus() - - return false - } - - , keydown: function (e) { - var $this - , $items - , $active - , $parent - , isActive - , index - - if (!/(38|40|27)/.test(e.keyCode)) return - - $this = $(this) - - e.preventDefault() - e.stopPropagation() - - if ($this.is('.disabled, :disabled')) return - - $parent = getParent($this) - - isActive = $parent.hasClass('open') - - if (!isActive || (isActive && e.keyCode == 27)) { - if (e.which == 27) $parent.find(toggle).focus() - return $this.click() - } - - $items = $('[role=menu] li:not(.divider):visible a', $parent) - - if (!$items.length) return - - index = $items.index($items.filter(':focus')) - - if (e.keyCode == 38 && index > 0) index-- // up - if (e.keyCode == 40 && index < $items.length - 1) index++ // down - if (!~index) index = 0 - - $items - .eq(index) - .focus() - } - - } - - function clearMenus() { - $('.dropdown-backdrop').remove() - $(toggle).each(function () { - getParent($(this)).removeClass('open') - }) - } - - function getParent($this) { - var selector = $this.attr('data-target') - , $parent - - if (!selector) { - selector = $this.attr('href') - selector = selector && /#/.test(selector) && selector.replace(/.*(?=#[^\s]*$)/, '') //strip for ie7 - } - - $parent = selector && $(selector) - - if (!$parent || !$parent.length) $parent = $this.parent() - - return $parent - } - - - /* DROPDOWN PLUGIN DEFINITION - * ========================== */ - - var old = $.fn.dropdown - - $.fn.dropdown = function (option) { - return this.each(function () { - var $this = $(this) - , data = $this.data('dropdown') - if (!data) $this.data('dropdown', (data = new Dropdown(this))) - if (typeof option == 'string') data[option].call($this) - }) - } - - $.fn.dropdown.Constructor = Dropdown - - - /* DROPDOWN NO CONFLICT - * ==================== */ - - $.fn.dropdown.noConflict = function () { - $.fn.dropdown = old - return this - } - - - /* APPLY TO STANDARD DROPDOWN ELEMENTS - * =================================== */ - - $(document) - .on('click.dropdown.data-api', clearMenus) - .on('click.dropdown.data-api', '.dropdown form', function (e) { e.stopPropagation() }) - .on('click.dropdown.data-api' , toggle, Dropdown.prototype.toggle) - .on('keydown.dropdown.data-api', toggle + ', [role=menu]' , Dropdown.prototype.keydown) - -}(window.$jqTheme || window.jQuery); -/* ========================================================= - * bootstrap-modal.js v2.3.2 - * http://twitter.github.com/bootstrap/javascript.html#modals - * ========================================================= - * Copyright 2012 Twitter, Inc. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - * ========================================================= */ - - -!function ($) { - - "use strict"; // jshint ;_; - - - /* MODAL CLASS DEFINITION - * ====================== */ - - var Modal = function (element, options) { - this.options = options - this.$element = $(element) - .delegate('[data-dismiss="modal"]', 'click.dismiss.modal', $.proxy(this.hide, this)) - this.options.remote && this.$element.find('.modal-body').load(this.options.remote) - } - - Modal.prototype = { - - constructor: Modal - - , toggle: function () { - return this[!this.isShown ? 'show' : 'hide']() - } - - , show: function () { - var that = this - , e = $.Event('show') - - this.$element.trigger(e) - - if (this.isShown || e.isDefaultPrevented()) return - - this.isShown = true - - this.escape() - - this.backdrop(function () { - var transition = $.support.transition && that.$element.hasClass('fade') - - if (!that.$element.parent().length) { - that.$element.appendTo(document.body) //don't move modals dom position - } - - that.$element.show() - - if (transition) { - that.$element[0].offsetWidth // force reflow - } - - that.$element - .addClass('in') - .attr('aria-hidden', false) - - that.enforceFocus() - - transition ? - that.$element.one($.support.transition.end, function () { that.$element.focus().trigger('shown') }) : - that.$element.focus().trigger('shown') - - }) - } - - , hide: function (e) { - e && e.preventDefault() - - var that = this - - e = $.Event('hide') - - this.$element.trigger(e) - - if (!this.isShown || e.isDefaultPrevented()) return - - this.isShown = false - - this.escape() - - $(document).off('focusin.modal') - - this.$element - .removeClass('in') - .attr('aria-hidden', true) - - $.support.transition && this.$element.hasClass('fade') ? - this.hideWithTransition() : - this.hideModal() - } - - , enforceFocus: function () { - var that = this - $(document).on('focusin.modal', function (e) { - if (that.$element[0] !== e.target && !that.$element.has(e.target).length) { - that.$element.focus() - } - }) - } - - , escape: function () { - var that = this - if (this.isShown && this.options.keyboard) { - this.$element.on('keyup.dismiss.modal', function ( e ) { - e.which == 27 && that.hide() - }) - } else if (!this.isShown) { - this.$element.off('keyup.dismiss.modal') - } - } - - , hideWithTransition: function () { - var that = this - , timeout = setTimeout(function () { - that.$element.off($.support.transition.end) - that.hideModal() - }, 500) - - this.$element.one($.support.transition.end, function () { - clearTimeout(timeout) - that.hideModal() - }) - } - - , hideModal: function () { - var that = this - this.$element.hide() - this.backdrop(function () { - that.removeBackdrop() - that.$element.trigger('hidden') - }) - } - - , removeBackdrop: function () { - this.$backdrop && this.$backdrop.remove() - this.$backdrop = null - } - - , backdrop: function (callback) { - var that = this - , animate = this.$element.hasClass('fade') ? 'fade' : '' - - if (this.isShown && this.options.backdrop) { - var doAnimate = $.support.transition && animate - - this.$backdrop = $('
        ') - .appendTo(document.body) - - this.$backdrop.click( - this.options.backdrop == 'static' ? - $.proxy(this.$element[0].focus, this.$element[0]) - : $.proxy(this.hide, this) - ) - - if (doAnimate) this.$backdrop[0].offsetWidth // force reflow - - this.$backdrop.addClass('in') - - if (!callback) return - - doAnimate ? - this.$backdrop.one($.support.transition.end, callback) : - callback() - - } else if (!this.isShown && this.$backdrop) { - this.$backdrop.removeClass('in') - - $.support.transition && this.$element.hasClass('fade')? - this.$backdrop.one($.support.transition.end, callback) : - callback() - - } else if (callback) { - callback() - } - } - } - - - /* MODAL PLUGIN DEFINITION - * ======================= */ - - var old = $.fn.modal - - $.fn.modal = function (option) { - return this.each(function () { - var $this = $(this) - , data = $this.data('modal') - , options = $.extend({}, $.fn.modal.defaults, $this.data(), typeof option == 'object' && option) - if (!data) $this.data('modal', (data = new Modal(this, options))) - if (typeof option == 'string') data[option]() - else if (options.show) data.show() - }) - } - - $.fn.modal.defaults = { - backdrop: true - , keyboard: true - , show: true - } - - $.fn.modal.Constructor = Modal - - - /* MODAL NO CONFLICT - * ================= */ - - $.fn.modal.noConflict = function () { - $.fn.modal = old - return this - } - - - /* MODAL DATA-API - * ============== */ - - $(document).on('click.modal.data-api', '[data-toggle="modal"]', function (e) { - var $this = $(this) - , href = $this.attr('href') - , $target = $($this.attr('data-target') || (href && href.replace(/.*(?=#[^\s]+$)/, ''))) //strip for ie7 - , option = $target.data('modal') ? 'toggle' : $.extend({ remote:!/#/.test(href) && href }, $target.data(), $this.data()) - - e.preventDefault() - - $target - .modal(option) - .one('hide', function () { - $this.focus() - }) - }) - -}(window.$jqTheme || window.jQuery); -/* =========================================================== - * bootstrap-tooltip.js v2.3.2 - * http://twitter.github.com/bootstrap/javascript.html#tooltips - * Inspired by the original jQuery.tipsy by Jason Frame - * =========================================================== - * Copyright 2012 Twitter, Inc. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - * ========================================================== */ - - -!function ($) { - - "use strict"; // jshint ;_; - - - /* TOOLTIP PUBLIC CLASS DEFINITION - * =============================== */ - - var Tooltip = function (element, options) { - this.init('tooltip', element, options) - } - - Tooltip.prototype = { - - constructor: Tooltip - - , init: function (type, element, options) { - var eventIn - , eventOut - , triggers - , trigger - , i - - this.type = type - this.$element = $(element) - this.options = this.getOptions(options) - this.enabled = true - - triggers = this.options.trigger.split(' ') - - for (i = triggers.length; i--;) { - trigger = triggers[i] - if (trigger == 'click') { - this.$element.on('click.' + this.type, this.options.selector, $.proxy(this.toggle, this)) - } else if (trigger != 'manual') { - eventIn = trigger == 'hover' ? 'mouseenter' : 'focus' - eventOut = trigger == 'hover' ? 'mouseleave' : 'blur' - this.$element.on(eventIn + '.' + this.type, this.options.selector, $.proxy(this.enter, this)) - this.$element.on(eventOut + '.' + this.type, this.options.selector, $.proxy(this.leave, this)) - } - } - - this.options.selector ? - (this._options = $.extend({}, this.options, { trigger: 'manual', selector: '' })) : - this.fixTitle() - } - - , getOptions: function (options) { - options = $.extend({}, $.fn[this.type].defaults, this.$element.data(), options) - - if (options.delay && typeof options.delay == 'number') { - options.delay = { - show: options.delay - , hide: options.delay - } - } - - return options - } - - , enter: function (e) { - var defaults = $.fn[this.type].defaults - , options = {} - , self - - this._options && $.each(this._options, function (key, value) { - if (defaults[key] != value) options[key] = value - }, this) - - self = $(e.currentTarget)[this.type](options).data(this.type) - - if (!self.options.delay || !self.options.delay.show) return self.show() - - clearTimeout(this.timeout) - self.hoverState = 'in' - this.timeout = setTimeout(function() { - if (self.hoverState == 'in') self.show() - }, self.options.delay.show) - } - - , leave: function (e) { - var self = $(e.currentTarget)[this.type](this._options).data(this.type) - - if (this.timeout) clearTimeout(this.timeout) - if (!self.options.delay || !self.options.delay.hide) return self.hide() - - self.hoverState = 'out' - this.timeout = setTimeout(function() { - if (self.hoverState == 'out') self.hide() - }, self.options.delay.hide) - } - - , show: function () { - var $tip - , pos - , actualWidth - , actualHeight - , placement - , tp - , e = $.Event('show') - - if (this.hasContent() && this.enabled) { - this.$element.trigger(e) - if (e.isDefaultPrevented()) return - $tip = this.tip() - this.setContent() - - if (this.options.animation) { - $tip.addClass('fade') - } - - placement = typeof this.options.placement == 'function' ? - this.options.placement.call(this, $tip[0], this.$element[0]) : - this.options.placement - - $tip - .detach() - .css({ top: 0, left: 0, display: 'block' }) - - this.options.container ? $tip.appendTo(this.options.container) : $tip.insertAfter(this.$element) - - pos = this.getPosition() - - actualWidth = $tip[0].offsetWidth - actualHeight = $tip[0].offsetHeight - - switch (placement) { - case 'bottom': - tp = {top: pos.top + pos.height, left: pos.left + pos.width / 2 - actualWidth / 2} - break - case 'top': - tp = {top: pos.top - actualHeight, left: pos.left + pos.width / 2 - actualWidth / 2} - break - case 'left': - tp = {top: pos.top + pos.height / 2 - actualHeight / 2, left: pos.left - actualWidth} - break - case 'right': - tp = {top: pos.top + pos.height / 2 - actualHeight / 2, left: pos.left + pos.width} - break - } - - this.applyPlacement(tp, placement) - this.$element.trigger('shown') - } - } - - , applyPlacement: function(offset, placement){ - var $tip = this.tip() - , width = $tip[0].offsetWidth - , height = $tip[0].offsetHeight - , actualWidth - , actualHeight - , delta - , replace - - $tip - .offset(offset) - .addClass(placement) - .addClass('in') - - actualWidth = $tip[0].offsetWidth - actualHeight = $tip[0].offsetHeight - - if (placement == 'top' && actualHeight != height) { - offset.top = offset.top + height - actualHeight - replace = true - } - - if (placement == 'bottom' || placement == 'top') { - delta = 0 - - if (offset.left < 0){ - delta = offset.left * -2 - offset.left = 0 - $tip.offset(offset) - actualWidth = $tip[0].offsetWidth - actualHeight = $tip[0].offsetHeight - } - - this.replaceArrow(delta - width + actualWidth, actualWidth, 'left') - } else { - this.replaceArrow(actualHeight - height, actualHeight, 'top') - } - - if (replace) $tip.offset(offset) - } - - , replaceArrow: function(delta, dimension, position){ - this - .arrow() - .css(position, delta ? (50 * (1 - delta / dimension) + "%") : '') - } - - , setContent: function () { - var $tip = this.tip() - , title = this.getTitle() - - $tip.find('.tooltip-inner')[this.options.html ? 'html' : 'text'](title) - $tip.removeClass('fade in top bottom left right') - } - - , hide: function () { - var that = this - , $tip = this.tip() - , e = $.Event('hide') - - this.$element.trigger(e) - if (e.isDefaultPrevented()) return - - $tip.removeClass('in') - - function removeWithAnimation() { - var timeout = setTimeout(function () { - $tip.off($.support.transition.end).detach() - }, 500) - - $tip.one($.support.transition.end, function () { - clearTimeout(timeout) - $tip.detach() - }) - } - - $.support.transition && this.$tip.hasClass('fade') ? - removeWithAnimation() : - $tip.detach() - - this.$element.trigger('hidden') - - return this - } - - , fixTitle: function () { - var $e = this.$element - if ($e.attr('title') || typeof($e.attr('data-original-title')) != 'string') { - $e.attr('data-original-title', $e.attr('title') || '').attr('title', '') - } - } - - , hasContent: function () { - return this.getTitle() - } - - , getPosition: function () { - var el = this.$element[0] - return $.extend({}, (typeof el.getBoundingClientRect == 'function') ? el.getBoundingClientRect() : { - width: el.offsetWidth - , height: el.offsetHeight - }, this.$element.offset()) - } - - , getTitle: function () { - var title - , $e = this.$element - , o = this.options - - title = $e.attr('data-original-title') - || (typeof o.title == 'function' ? o.title.call($e[0]) : o.title) - - return title - } - - , tip: function () { - return this.$tip = this.$tip || $(this.options.template) - } - - , arrow: function(){ - return this.$arrow = this.$arrow || this.tip().find(".tooltip-arrow") - } - - , validate: function () { - if (!this.$element[0].parentNode) { - this.hide() - this.$element = null - this.options = null - } - } - - , enable: function () { - this.enabled = true - } - - , disable: function () { - this.enabled = false - } - - , toggleEnabled: function () { - this.enabled = !this.enabled - } - - , toggle: function (e) { - var self = e ? $(e.currentTarget)[this.type](this._options).data(this.type) : this - self.tip().hasClass('in') ? self.hide() : self.show() - } - - , destroy: function () { - this.hide().$element.off('.' + this.type).removeData(this.type) - } - - } - - - /* TOOLTIP PLUGIN DEFINITION - * ========================= */ - - var old = $.fn.tooltip - - $.fn.tooltip = function ( option ) { - return this.each(function () { - var $this = $(this) - , data = $this.data('tooltip') - , options = typeof option == 'object' && option - if (!data) $this.data('tooltip', (data = new Tooltip(this, options))) - if (typeof option == 'string') data[option]() - }) - } - - $.fn.tooltip.Constructor = Tooltip - - $.fn.tooltip.defaults = { - animation: true - , placement: 'top' - , selector: false - , template: '
        ' - , trigger: 'hover focus' - , title: '' - , delay: 0 - , html: false - , container: false - } - - - /* TOOLTIP NO CONFLICT - * =================== */ - - $.fn.tooltip.noConflict = function () { - $.fn.tooltip = old - return this - } - -}(window.$jqTheme || window.jQuery); -/* =========================================================== - * bootstrap-popover.js v2.3.2 - * http://twitter.github.com/bootstrap/javascript.html#popovers - * =========================================================== - * Copyright 2012 Twitter, Inc. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - * =========================================================== */ - - -!function ($) { - - "use strict"; // jshint ;_; - - - /* POPOVER PUBLIC CLASS DEFINITION - * =============================== */ - - var Popover = function (element, options) { - this.init('popover', element, options) - } - - - /* NOTE: POPOVER EXTENDS BOOTSTRAP-TOOLTIP.js - ========================================== */ - - Popover.prototype = $.extend({}, $.fn.tooltip.Constructor.prototype, { - - constructor: Popover - - , setContent: function () { - var $tip = this.tip() - , title = this.getTitle() - , content = this.getContent() - - $tip.find('.popover-title')[this.options.html ? 'html' : 'text'](title) - $tip.find('.popover-content')[this.options.html ? 'html' : 'text'](content) - - $tip.removeClass('fade top bottom left right in') - } - - , hasContent: function () { - return this.getTitle() || this.getContent() - } - - , getContent: function () { - var content - , $e = this.$element - , o = this.options - - content = (typeof o.content == 'function' ? o.content.call($e[0]) : o.content) - || $e.attr('data-content') - - return content - } - - , tip: function () { - if (!this.$tip) { - this.$tip = $(this.options.template) - } - return this.$tip - } - - , destroy: function () { - this.hide().$element.off('.' + this.type).removeData(this.type) - } - - }) - - - /* POPOVER PLUGIN DEFINITION - * ======================= */ - - var old = $.fn.popover - - $.fn.popover = function (option) { - return this.each(function () { - var $this = $(this) - , data = $this.data('popover') - , options = typeof option == 'object' && option - if (!data) $this.data('popover', (data = new Popover(this, options))) - if (typeof option == 'string') data[option]() - }) - } - - $.fn.popover.Constructor = Popover - - $.fn.popover.defaults = $.extend({} , $.fn.tooltip.defaults, { - placement: 'right' - , trigger: 'click' - , content: '' - , template: '

        ' - }) - - - /* POPOVER NO CONFLICT - * =================== */ - - $.fn.popover.noConflict = function () { - $.fn.popover = old - return this - } - -}(window.$jqTheme || window.jQuery); -/* ============================================================= - * bootstrap-scrollspy.js v2.3.2 - * http://twitter.github.com/bootstrap/javascript.html#scrollspy - * ============================================================= - * Copyright 2012 Twitter, Inc. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - * ============================================================== */ - - -!function ($) { - - "use strict"; // jshint ;_; - - - /* SCROLLSPY CLASS DEFINITION - * ========================== */ - - function ScrollSpy(element, options) { - var process = $.proxy(this.process, this) - , $element = $(element).is('body') ? $(window) : $(element) - , href - this.options = $.extend({}, $.fn.scrollspy.defaults, options) - this.$scrollElement = $element.on('scroll.scroll-spy.data-api', process) - this.selector = (this.options.target - || ((href = $(element).attr('href')) && href.replace(/.*(?=#[^\s]+$)/, '')) //strip for ie7 - || '') + ' .nav li > a' - this.$body = $('body') - this.refresh() - this.process() - } - - ScrollSpy.prototype = { - - constructor: ScrollSpy - - , refresh: function () { - var self = this - , $targets - - this.offsets = $([]) - this.targets = $([]) - - $targets = this.$body - .find(this.selector) - .map(function () { - var $el = $(this) - , href = $el.data('target') || $el.attr('href') - , $href = /^#\w/.test(href) && $(href) - return ( $href - && $href.length - && [[ $href.position().top + (!$.isWindow(self.$scrollElement.get(0)) && self.$scrollElement.scrollTop()), href ]] ) || null - }) - .sort(function (a, b) { return a[0] - b[0] }) - .each(function () { - self.offsets.push(this[0]) - self.targets.push(this[1]) - }) - } - - , process: function () { - var scrollTop = this.$scrollElement.scrollTop() + this.options.offset - , scrollHeight = this.$scrollElement[0].scrollHeight || this.$body[0].scrollHeight - , maxScroll = scrollHeight - this.$scrollElement.height() - , offsets = this.offsets - , targets = this.targets - , activeTarget = this.activeTarget - , i - - if (scrollTop >= maxScroll) { - return activeTarget != (i = targets.last()[0]) - && this.activate ( i ) - } - - for (i = offsets.length; i--;) { - activeTarget != targets[i] - && scrollTop >= offsets[i] - && (!offsets[i + 1] || scrollTop <= offsets[i + 1]) - && this.activate( targets[i] ) - } - } - - , activate: function (target) { - var active - , selector - - this.activeTarget = target - - $(this.selector) - .parent('.active') - .removeClass('active') - - selector = this.selector - + '[data-target="' + target + '"],' - + this.selector + '[href="' + target + '"]' - - active = $(selector) - .parent('li') - .addClass('active') - - if (active.parent('.dropdown-menu').length) { - active = active.closest('li.dropdown').addClass('active') - } - - active.trigger('activate') - } - - } - - - /* SCROLLSPY PLUGIN DEFINITION - * =========================== */ - - var old = $.fn.scrollspy - - $.fn.scrollspy = function (option) { - return this.each(function () { - var $this = $(this) - , data = $this.data('scrollspy') - , options = typeof option == 'object' && option - if (!data) $this.data('scrollspy', (data = new ScrollSpy(this, options))) - if (typeof option == 'string') data[option]() - }) - } - - $.fn.scrollspy.Constructor = ScrollSpy - - $.fn.scrollspy.defaults = { - offset: 10 - } - - - /* SCROLLSPY NO CONFLICT - * ===================== */ - - $.fn.scrollspy.noConflict = function () { - $.fn.scrollspy = old - return this - } - - - /* SCROLLSPY DATA-API - * ================== */ - - $(window).on('load', function () { - $('[data-spy="scroll"]').each(function () { - var $spy = $(this) - $spy.scrollspy($spy.data()) - }) - }) - -}(window.$jqTheme || window.jQuery); -/* ======================================================== - * bootstrap-tab.js v2.3.2 - * http://twitter.github.com/bootstrap/javascript.html#tabs - * ======================================================== - * Copyright 2012 Twitter, Inc. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - * ======================================================== */ - - -!function ($) { - - "use strict"; // jshint ;_; - - - /* TAB CLASS DEFINITION - * ==================== */ - - var Tab = function (element) { - this.element = $(element) - } - - Tab.prototype = { - - constructor: Tab - - , show: function () { - var $this = this.element - , $ul = $this.closest('ul:not(.dropdown-menu)') - , selector = $this.attr('data-target') - , previous - , $target - , e - - if (!selector) { - selector = $this.attr('href') - selector = selector && selector.replace(/.*(?=#[^\s]*$)/, '') //strip for ie7 - } - - if ( $this.parent('li').hasClass('active') ) return - - previous = $ul.find('.active:last a')[0] - - e = $.Event('show', { - relatedTarget: previous - }) - - $this.trigger(e) - - if (e.isDefaultPrevented()) return - - $target = $(selector) - - this.activate($this.parent('li'), $ul) - this.activate($target, $target.parent(), function () { - $this.trigger({ - type: 'shown' - , relatedTarget: previous - }) - }) - } - - , activate: function ( element, container, callback) { - var $active = container.find('> .active') - , transition = callback - && $.support.transition - && $active.hasClass('fade') - - function next() { - $active - .removeClass('active') - .find('> .dropdown-menu > .active') - .removeClass('active') - - element.addClass('active') - - if (transition) { - element[0].offsetWidth // reflow for transition - element.addClass('in') - } else { - element.removeClass('fade') - } - - if ( element.parent('.dropdown-menu') ) { - element.closest('li.dropdown').addClass('active') - } - - callback && callback() - } - - transition ? - $active.one($.support.transition.end, next) : - next() - - $active.removeClass('in') - } - } - - - /* TAB PLUGIN DEFINITION - * ===================== */ - - var old = $.fn.tab - - $.fn.tab = function ( option ) { - return this.each(function () { - var $this = $(this) - , data = $this.data('tab') - if (!data) $this.data('tab', (data = new Tab(this))) - if (typeof option == 'string') data[option]() - }) - } - - $.fn.tab.Constructor = Tab - - - /* TAB NO CONFLICT - * =============== */ - - $.fn.tab.noConflict = function () { - $.fn.tab = old - return this - } - - - /* TAB DATA-API - * ============ */ - - $(document).on('click.tab.data-api', '[data-toggle="tab"], [data-toggle="pill"]', function (e) { - e.preventDefault() - $(this).tab('show') - }) - -}(window.$jqTheme || window.jQuery); -/* ============================================================= - * bootstrap-typeahead.js v2.3.2 - * http://twitter.github.com/bootstrap/javascript.html#typeahead - * ============================================================= - * Copyright 2012 Twitter, Inc. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - * ============================================================ */ - - -!function($){ - - "use strict"; // jshint ;_; - - - /* TYPEAHEAD PUBLIC CLASS DEFINITION - * ================================= */ - - var Typeahead = function (element, options) { - this.$element = $(element) - this.options = $.extend({}, $.fn.typeahead.defaults, options) - this.matcher = this.options.matcher || this.matcher - this.sorter = this.options.sorter || this.sorter - this.highlighter = this.options.highlighter || this.highlighter - this.updater = this.options.updater || this.updater - this.source = this.options.source - this.$menu = $(this.options.menu) - this.shown = false - this.listen() - } - - Typeahead.prototype = { - - constructor: Typeahead - - , select: function () { - var val = this.$menu.find('.active').attr('data-value') - this.$element - .val(this.updater(val)) - .change() - return this.hide() - } - - , updater: function (item) { - return item - } - - , show: function () { - var pos = $.extend({}, this.$element.position(), { - height: this.$element[0].offsetHeight - }) - - this.$menu - .insertAfter(this.$element) - .css({ - top: pos.top + pos.height - , left: pos.left - }) - .show() - - this.shown = true - return this - } - - , hide: function () { - this.$menu.hide() - this.shown = false - return this - } - - , lookup: function (event) { - var items - - this.query = this.$element.val() - - if (!this.query || this.query.length < this.options.minLength) { - return this.shown ? this.hide() : this - } - - items = $.isFunction(this.source) ? this.source(this.query, $.proxy(this.process, this)) : this.source - - return items ? this.process(items) : this - } - - , process: function (items) { - var that = this - - items = $.grep(items, function (item) { - return that.matcher(item) - }) - - items = this.sorter(items) - - if (!items.length) { - return this.shown ? this.hide() : this - } - - return this.render(items.slice(0, this.options.items)).show() - } - - , matcher: function (item) { - return ~item.toLowerCase().indexOf(this.query.toLowerCase()) - } - - , sorter: function (items) { - var beginswith = [] - , caseSensitive = [] - , caseInsensitive = [] - , item - - while (item = items.shift()) { - if (!item.toLowerCase().indexOf(this.query.toLowerCase())) beginswith.push(item) - else if (~item.indexOf(this.query)) caseSensitive.push(item) - else caseInsensitive.push(item) - } - - return beginswith.concat(caseSensitive, caseInsensitive) - } - - , highlighter: function (item) { - var query = this.query.replace(/[\-\[\]{}()*+?.,\\\^$|#\s]/g, '\\$&') - return item.replace(new RegExp('(' + query + ')', 'ig'), function ($1, match) { - return '' + match + '' - }) - } - - , render: function (items) { - var that = this - - items = $(items).map(function (i, item) { - i = $(that.options.item).attr('data-value', item) - i.find('a').html(that.highlighter(item)) - return i[0] - }) - - items.first().addClass('active') - this.$menu.html(items) - return this - } - - , next: function (event) { - var active = this.$menu.find('.active').removeClass('active') - , next = active.next() - - if (!next.length) { - next = $(this.$menu.find('li')[0]) - } - - next.addClass('active') - } - - , prev: function (event) { - var active = this.$menu.find('.active').removeClass('active') - , prev = active.prev() - - if (!prev.length) { - prev = this.$menu.find('li').last() - } - - prev.addClass('active') - } - - , listen: function () { - this.$element - .on('focus', $.proxy(this.focus, this)) - .on('blur', $.proxy(this.blur, this)) - .on('keypress', $.proxy(this.keypress, this)) - .on('keyup', $.proxy(this.keyup, this)) - - if (this.eventSupported('keydown')) { - this.$element.on('keydown', $.proxy(this.keydown, this)) - } - - this.$menu - .on('click', $.proxy(this.click, this)) - .on('mouseenter', 'li', $.proxy(this.mouseenter, this)) - .on('mouseleave', 'li', $.proxy(this.mouseleave, this)) - } - - , eventSupported: function(eventName) { - var isSupported = eventName in this.$element - if (!isSupported) { - this.$element.setAttribute(eventName, 'return;') - isSupported = typeof this.$element[eventName] === 'function' - } - return isSupported - } - - , move: function (e) { - if (!this.shown) return - - switch(e.keyCode) { - case 9: // tab - case 13: // enter - case 27: // escape - e.preventDefault() - break - - case 38: // up arrow - e.preventDefault() - this.prev() - break - - case 40: // down arrow - e.preventDefault() - this.next() - break - } - - e.stopPropagation() - } - - , keydown: function (e) { - this.suppressKeyPressRepeat = ~$.inArray(e.keyCode, [40,38,9,13,27]) - this.move(e) - } - - , keypress: function (e) { - if (this.suppressKeyPressRepeat) return - this.move(e) - } - - , keyup: function (e) { - switch(e.keyCode) { - case 40: // down arrow - case 38: // up arrow - case 16: // shift - case 17: // ctrl - case 18: // alt - break - - case 9: // tab - case 13: // enter - if (!this.shown) return - this.select() - break - - case 27: // escape - if (!this.shown) return - this.hide() - break - - default: - this.lookup() - } - - e.stopPropagation() - e.preventDefault() - } - - , focus: function (e) { - this.focused = true - } - - , blur: function (e) { - this.focused = false - if (!this.mousedover && this.shown) this.hide() - } - - , click: function (e) { - e.stopPropagation() - e.preventDefault() - this.select() - this.$element.focus() - } - - , mouseenter: function (e) { - this.mousedover = true - this.$menu.find('.active').removeClass('active') - $(e.currentTarget).addClass('active') - } - - , mouseleave: function (e) { - this.mousedover = false - if (!this.focused && this.shown) this.hide() - } - - } - - - /* TYPEAHEAD PLUGIN DEFINITION - * =========================== */ - - var old = $.fn.typeahead - - $.fn.typeahead = function (option) { - return this.each(function () { - var $this = $(this) - , data = $this.data('typeahead') - , options = typeof option == 'object' && option - if (!data) $this.data('typeahead', (data = new Typeahead(this, options))) - if (typeof option == 'string') data[option]() - }) - } - - $.fn.typeahead.defaults = { - source: [] - , items: 8 - , menu: '
          ' - , item: '
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* Bootstrap v3.3.7 (http://getbootstrap.com)\n * Copyright 2011-2016 Twitter, Inc.\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)\n */\n.btn-default,\n.btn-primary,\n.btn-success,\n.btn-info,\n.btn-warning,\n.btn-danger {\n text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.2);\n -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.15), 0 1px 1px rgba(0, 0, 0, 0.075);\n box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.15), 0 1px 1px rgba(0, 0, 0, 0.075);\n}\n.btn-default:active,\n.btn-primary:active,\n.btn-success:active,\n.btn-info:active,\n.btn-warning:active,\n.btn-danger:active,\n.btn-default.active,\n.btn-primary.active,\n.btn-success.active,\n.btn-info.active,\n.btn-warning.active,\n.btn-danger.active {\n -webkit-box-shadow: inset 0 3px 5px rgba(0, 0, 0, 0.125);\n box-shadow: inset 0 3px 5px rgba(0, 0, 0, 0.125);\n}\n.btn-default.disabled,\n.btn-primary.disabled,\n.btn-success.disabled,\n.btn-info.disabled,\n.btn-warning.disabled,\n.btn-danger.disabled,\n.btn-default[disabled],\n.btn-primary[disabled],\n.btn-success[disabled],\n.btn-info[disabled],\n.btn-warning[disabled],\n.btn-danger[disabled],\nfieldset[disabled] .btn-default,\nfieldset[disabled] .btn-primary,\nfieldset[disabled] .btn-success,\nfieldset[disabled] .btn-info,\nfieldset[disabled] .btn-warning,\nfieldset[disabled] .btn-danger {\n -webkit-box-shadow: none;\n box-shadow: none;\n}\n.btn-default .badge,\n.btn-primary .badge,\n.btn-success .badge,\n.btn-info .badge,\n.btn-warning .badge,\n.btn-danger .badge {\n text-shadow: none;\n}\n.btn:active,\n.btn.active {\n background-image: none;\n}\n.btn-default {\n background-image: -webkit-linear-gradient(top, #fff 0%, #e0e0e0 100%);\n background-image: -o-linear-gradient(top, #fff 0%, #e0e0e0 100%);\n background-image: linear-gradient(to bottom, #fff 0%, #e0e0e0 100%);\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffffffff', endColorstr='#ffe0e0e0', GradientType=0);\n filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);\n background-repeat: repeat-x;\n border-color: #dbdbdb;\n text-shadow: 0 1px 0 #fff;\n border-color: #ccc;\n}\n.btn-default:hover,\n.btn-default:focus {\n background-color: #e0e0e0;\n background-position: 0 -15px;\n}\n.btn-default:active,\n.btn-default.active {\n background-color: #e0e0e0;\n border-color: #dbdbdb;\n}\n.btn-default.disabled,\n.btn-default[disabled],\nfieldset[disabled] .btn-default,\n.btn-default.disabled:hover,\n.btn-default[disabled]:hover,\nfieldset[disabled] .btn-default:hover,\n.btn-default.disabled:focus,\n.btn-default[disabled]:focus,\nfieldset[disabled] .btn-default:focus,\n.btn-default.disabled.focus,\n.btn-default[disabled].focus,\nfieldset[disabled] .btn-default.focus,\n.btn-default.disabled:active,\n.btn-default[disabled]:active,\nfieldset[disabled] .btn-default:active,\n.btn-default.disabled.active,\n.btn-default[disabled].active,\nfieldset[disabled] .btn-default.active {\n background-color: #e0e0e0;\n background-image: none;\n}\n.btn-primary {\n background-image: -webkit-linear-gradient(top, #337ab7 0%, #265a88 100%);\n background-image: -o-linear-gradient(top, #337ab7 0%, #265a88 100%);\n background-image: linear-gradient(to bottom, #337ab7 0%, #265a88 100%);\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff337ab7', endColorstr='#ff265a88', GradientType=0);\n filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);\n background-repeat: repeat-x;\n border-color: #245580;\n}\n.btn-primary:hover,\n.btn-primary:focus {\n background-color: #265a88;\n background-position: 0 -15px;\n}\n.btn-primary:active,\n.btn-primary.active {\n background-color: #265a88;\n border-color: #245580;\n}\n.btn-primary.disabled,\n.btn-primary[disabled],\nfieldset[disabled] .btn-primary,\n.btn-primary.disabled:hover,\n.btn-primary[disabled]:hover,\nfieldset[disabled] .btn-primary:hover,\n.btn-primary.disabled:focus,\n.btn-primary[disabled]:focus,\nfieldset[disabled] .btn-primary:focus,\n.btn-primary.disabled.focus,\n.btn-primary[disabled].focus,\nfieldset[disabled] .btn-primary.focus,\n.btn-primary.disabled:active,\n.btn-primary[disabled]:active,\nfieldset[disabled] .btn-primary:active,\n.btn-primary.disabled.active,\n.btn-primary[disabled].active,\nfieldset[disabled] .btn-primary.active {\n background-color: #265a88;\n background-image: none;\n}\n.btn-success {\n background-image: -webkit-linear-gradient(top, #5cb85c 0%, #419641 100%);\n background-image: -o-linear-gradient(top, #5cb85c 0%, #419641 100%);\n background-image: linear-gradient(to bottom, #5cb85c 0%, #419641 100%);\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5cb85c', endColorstr='#ff419641', GradientType=0);\n filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);\n background-repeat: repeat-x;\n border-color: #3e8f3e;\n}\n.btn-success:hover,\n.btn-success:focus {\n background-color: #419641;\n background-position: 0 -15px;\n}\n.btn-success:active,\n.btn-success.active {\n background-color: #419641;\n border-color: #3e8f3e;\n}\n.btn-success.disabled,\n.btn-success[disabled],\nfieldset[disabled] .btn-success,\n.btn-success.disabled:hover,\n.btn-success[disabled]:hover,\nfieldset[disabled] .btn-success:hover,\n.btn-success.disabled:focus,\n.btn-success[disabled]:focus,\nfieldset[disabled] .btn-success:focus,\n.btn-success.disabled.focus,\n.btn-success[disabled].focus,\nfieldset[disabled] .btn-success.focus,\n.btn-success.disabled:active,\n.btn-success[disabled]:active,\nfieldset[disabled] .btn-success:active,\n.btn-success.disabled.active,\n.btn-success[disabled].active,\nfieldset[disabled] .btn-success.active {\n background-color: #419641;\n background-image: none;\n}\n.btn-info {\n background-image: -webkit-linear-gradient(top, #5bc0de 0%, #2aabd2 100%);\n background-image: -o-linear-gradient(top, #5bc0de 0%, #2aabd2 100%);\n background-image: linear-gradient(to bottom, #5bc0de 0%, #2aabd2 100%);\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5bc0de', endColorstr='#ff2aabd2', GradientType=0);\n filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);\n background-repeat: repeat-x;\n border-color: #28a4c9;\n}\n.btn-info:hover,\n.btn-info:focus {\n background-color: #2aabd2;\n background-position: 0 -15px;\n}\n.btn-info:active,\n.btn-info.active {\n background-color: #2aabd2;\n border-color: #28a4c9;\n}\n.btn-info.disabled,\n.btn-info[disabled],\nfieldset[disabled] .btn-info,\n.btn-info.disabled:hover,\n.btn-info[disabled]:hover,\nfieldset[disabled] .btn-info:hover,\n.btn-info.disabled:focus,\n.btn-info[disabled]:focus,\nfieldset[disabled] .btn-info:focus,\n.btn-info.disabled.focus,\n.btn-info[disabled].focus,\nfieldset[disabled] .btn-info.focus,\n.btn-info.disabled:active,\n.btn-info[disabled]:active,\nfieldset[disabled] .btn-info:active,\n.btn-info.disabled.active,\n.btn-info[disabled].active,\nfieldset[disabled] .btn-info.active {\n background-color: #2aabd2;\n background-image: none;\n}\n.btn-warning {\n background-image: -webkit-linear-gradient(top, #f0ad4e 0%, #eb9316 100%);\n background-image: -o-linear-gradient(top, #f0ad4e 0%, #eb9316 100%);\n background-image: linear-gradient(to bottom, #f0ad4e 0%, #eb9316 100%);\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff0ad4e', endColorstr='#ffeb9316', GradientType=0);\n filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);\n background-repeat: repeat-x;\n border-color: #e38d13;\n}\n.btn-warning:hover,\n.btn-warning:focus {\n background-color: #eb9316;\n background-position: 0 -15px;\n}\n.btn-warning:active,\n.btn-warning.active {\n background-color: #eb9316;\n border-color: #e38d13;\n}\n.btn-warning.disabled,\n.btn-warning[disabled],\nfieldset[disabled] .btn-warning,\n.btn-warning.disabled:hover,\n.btn-warning[disabled]:hover,\nfieldset[disabled] .btn-warning:hover,\n.btn-warning.disabled:focus,\n.btn-warning[disabled]:focus,\nfieldset[disabled] .btn-warning:focus,\n.btn-warning.disabled.focus,\n.btn-warning[disabled].focus,\nfieldset[disabled] .btn-warning.focus,\n.btn-warning.disabled:active,\n.btn-warning[disabled]:active,\nfieldset[disabled] .btn-warning:active,\n.btn-warning.disabled.active,\n.btn-warning[disabled].active,\nfieldset[disabled] .btn-warning.active {\n background-color: #eb9316;\n background-image: none;\n}\n.btn-danger {\n background-image: -webkit-linear-gradient(top, #d9534f 0%, #c12e2a 100%);\n background-image: -o-linear-gradient(top, #d9534f 0%, #c12e2a 100%);\n background-image: linear-gradient(to bottom, #d9534f 0%, #c12e2a 100%);\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffd9534f', endColorstr='#ffc12e2a', GradientType=0);\n filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);\n background-repeat: repeat-x;\n border-color: #b92c28;\n}\n.btn-danger:hover,\n.btn-danger:focus {\n background-color: #c12e2a;\n background-position: 0 -15px;\n}\n.btn-danger:active,\n.btn-danger.active {\n background-color: #c12e2a;\n border-color: #b92c28;\n}\n.btn-danger.disabled,\n.btn-danger[disabled],\nfieldset[disabled] .btn-danger,\n.btn-danger.disabled:hover,\n.btn-danger[disabled]:hover,\nfieldset[disabled] .btn-danger:hover,\n.btn-danger.disabled:focus,\n.btn-danger[disabled]:focus,\nfieldset[disabled] .btn-danger:focus,\n.btn-danger.disabled.focus,\n.btn-danger[disabled].focus,\nfieldset[disabled] .btn-danger.focus,\n.btn-danger.disabled:active,\n.btn-danger[disabled]:active,\nfieldset[disabled] .btn-danger:active,\n.btn-danger.disabled.active,\n.btn-danger[disabled].active,\nfieldset[disabled] .btn-danger.active {\n background-color: #c12e2a;\n background-image: none;\n}\n.thumbnail,\n.img-thumbnail {\n -webkit-box-shadow: 0 1px 2px rgba(0, 0, 0, 0.075);\n box-shadow: 0 1px 2px rgba(0, 0, 0, 0.075);\n}\n.dropdown-menu > li > a:hover,\n.dropdown-menu > li > a:focus {\n background-image: -webkit-linear-gradient(top, #f5f5f5 0%, #e8e8e8 100%);\n background-image: -o-linear-gradient(top, #f5f5f5 0%, #e8e8e8 100%);\n background-image: linear-gradient(to bottom, #f5f5f5 0%, #e8e8e8 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff5f5f5', endColorstr='#ffe8e8e8', GradientType=0);\n background-color: #e8e8e8;\n}\n.dropdown-menu > .active > a,\n.dropdown-menu > .active > a:hover,\n.dropdown-menu > .active > a:focus {\n background-image: -webkit-linear-gradient(top, #337ab7 0%, #2e6da4 100%);\n background-image: -o-linear-gradient(top, #337ab7 0%, #2e6da4 100%);\n background-image: linear-gradient(to bottom, #337ab7 0%, #2e6da4 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff337ab7', endColorstr='#ff2e6da4', GradientType=0);\n background-color: #2e6da4;\n}\n.navbar-default {\n background-image: -webkit-linear-gradient(top, #ffffff 0%, #f8f8f8 100%);\n background-image: -o-linear-gradient(top, #ffffff 0%, #f8f8f8 100%);\n background-image: linear-gradient(to bottom, #ffffff 0%, #f8f8f8 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffffffff', endColorstr='#fff8f8f8', GradientType=0);\n filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);\n border-radius: 4px;\n -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.15), 0 1px 5px rgba(0, 0, 0, 0.075);\n box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.15), 0 1px 5px rgba(0, 0, 0, 0.075);\n}\n.navbar-default .navbar-nav > .open > a,\n.navbar-default .navbar-nav > .active > a {\n background-image: -webkit-linear-gradient(top, #dbdbdb 0%, #e2e2e2 100%);\n background-image: -o-linear-gradient(top, #dbdbdb 0%, #e2e2e2 100%);\n background-image: linear-gradient(to bottom, #dbdbdb 0%, #e2e2e2 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffdbdbdb', endColorstr='#ffe2e2e2', GradientType=0);\n -webkit-box-shadow: inset 0 3px 9px rgba(0, 0, 0, 0.075);\n box-shadow: inset 0 3px 9px rgba(0, 0, 0, 0.075);\n}\n.navbar-brand,\n.navbar-nav > li > a {\n text-shadow: 0 1px 0 rgba(255, 255, 255, 0.25);\n}\n.navbar-inverse {\n background-image: -webkit-linear-gradient(top, #3c3c3c 0%, #222 100%);\n background-image: -o-linear-gradient(top, #3c3c3c 0%, #222 100%);\n background-image: linear-gradient(to bottom, #3c3c3c 0%, #222 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff3c3c3c', endColorstr='#ff222222', GradientType=0);\n filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);\n border-radius: 4px;\n}\n.navbar-inverse .navbar-nav > .open > a,\n.navbar-inverse .navbar-nav > .active > a {\n background-image: -webkit-linear-gradient(top, #080808 0%, #0f0f0f 100%);\n background-image: -o-linear-gradient(top, #080808 0%, #0f0f0f 100%);\n background-image: linear-gradient(to bottom, #080808 0%, #0f0f0f 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff080808', endColorstr='#ff0f0f0f', GradientType=0);\n -webkit-box-shadow: inset 0 3px 9px rgba(0, 0, 0, 0.25);\n box-shadow: inset 0 3px 9px rgba(0, 0, 0, 0.25);\n}\n.navbar-inverse .navbar-brand,\n.navbar-inverse .navbar-nav > li > a {\n text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25);\n}\n.navbar-static-top,\n.navbar-fixed-top,\n.navbar-fixed-bottom {\n border-radius: 0;\n}\n@media (max-width: 767px) {\n .navbar .navbar-nav .open .dropdown-menu > .active > a,\n .navbar .navbar-nav .open .dropdown-menu > .active > a:hover,\n .navbar .navbar-nav .open .dropdown-menu > .active > a:focus {\n color: #fff;\n background-image: -webkit-linear-gradient(top, #337ab7 0%, #2e6da4 100%);\n background-image: -o-linear-gradient(top, #337ab7 0%, #2e6da4 100%);\n background-image: linear-gradient(to bottom, #337ab7 0%, #2e6da4 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff337ab7', endColorstr='#ff2e6da4', GradientType=0);\n }\n}\n.alert {\n text-shadow: 0 1px 0 rgba(255, 255, 255, 0.2);\n -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.25), 0 1px 2px rgba(0, 0, 0, 0.05);\n box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.25), 0 1px 2px rgba(0, 0, 0, 0.05);\n}\n.alert-success {\n background-image: -webkit-linear-gradient(top, #dff0d8 0%, #c8e5bc 100%);\n background-image: -o-linear-gradient(top, #dff0d8 0%, #c8e5bc 100%);\n background-image: linear-gradient(to bottom, #dff0d8 0%, #c8e5bc 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffdff0d8', endColorstr='#ffc8e5bc', GradientType=0);\n border-color: #b2dba1;\n}\n.alert-info {\n background-image: -webkit-linear-gradient(top, #d9edf7 0%, #b9def0 100%);\n background-image: -o-linear-gradient(top, #d9edf7 0%, #b9def0 100%);\n background-image: linear-gradient(to bottom, #d9edf7 0%, #b9def0 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffd9edf7', endColorstr='#ffb9def0', GradientType=0);\n border-color: #9acfea;\n}\n.alert-warning {\n background-image: -webkit-linear-gradient(top, #fcf8e3 0%, #f8efc0 100%);\n background-image: -o-linear-gradient(top, #fcf8e3 0%, #f8efc0 100%);\n background-image: linear-gradient(to bottom, #fcf8e3 0%, #f8efc0 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fffcf8e3', endColorstr='#fff8efc0', GradientType=0);\n border-color: #f5e79e;\n}\n.alert-danger {\n background-image: -webkit-linear-gradient(top, #f2dede 0%, #e7c3c3 100%);\n background-image: -o-linear-gradient(top, #f2dede 0%, #e7c3c3 100%);\n background-image: linear-gradient(to bottom, #f2dede 0%, #e7c3c3 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff2dede', endColorstr='#ffe7c3c3', GradientType=0);\n border-color: #dca7a7;\n}\n.progress {\n background-image: -webkit-linear-gradient(top, #ebebeb 0%, #f5f5f5 100%);\n background-image: -o-linear-gradient(top, #ebebeb 0%, #f5f5f5 100%);\n background-image: linear-gradient(to bottom, #ebebeb 0%, #f5f5f5 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffebebeb', endColorstr='#fff5f5f5', GradientType=0);\n}\n.progress-bar {\n background-image: -webkit-linear-gradient(top, #337ab7 0%, #286090 100%);\n background-image: -o-linear-gradient(top, #337ab7 0%, #286090 100%);\n background-image: linear-gradient(to bottom, #337ab7 0%, #286090 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff337ab7', endColorstr='#ff286090', GradientType=0);\n}\n.progress-bar-success {\n background-image: -webkit-linear-gradient(top, #5cb85c 0%, #449d44 100%);\n background-image: -o-linear-gradient(top, #5cb85c 0%, #449d44 100%);\n background-image: linear-gradient(to bottom, #5cb85c 0%, #449d44 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5cb85c', endColorstr='#ff449d44', GradientType=0);\n}\n.progress-bar-info {\n background-image: -webkit-linear-gradient(top, #5bc0de 0%, #31b0d5 100%);\n background-image: -o-linear-gradient(top, #5bc0de 0%, #31b0d5 100%);\n background-image: linear-gradient(to bottom, #5bc0de 0%, #31b0d5 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5bc0de', endColorstr='#ff31b0d5', GradientType=0);\n}\n.progress-bar-warning {\n background-image: -webkit-linear-gradient(top, #f0ad4e 0%, #ec971f 100%);\n background-image: -o-linear-gradient(top, #f0ad4e 0%, #ec971f 100%);\n background-image: linear-gradient(to bottom, #f0ad4e 0%, #ec971f 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff0ad4e', endColorstr='#ffec971f', GradientType=0);\n}\n.progress-bar-danger {\n background-image: -webkit-linear-gradient(top, #d9534f 0%, #c9302c 100%);\n background-image: -o-linear-gradient(top, #d9534f 0%, #c9302c 100%);\n background-image: linear-gradient(to bottom, #d9534f 0%, #c9302c 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffd9534f', endColorstr='#ffc9302c', GradientType=0);\n}\n.progress-bar-striped {\n background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);\n background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);\n background-image: linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);\n}\n.list-group {\n border-radius: 4px;\n -webkit-box-shadow: 0 1px 2px rgba(0, 0, 0, 0.075);\n box-shadow: 0 1px 2px rgba(0, 0, 0, 0.075);\n}\n.list-group-item.active,\n.list-group-item.active:hover,\n.list-group-item.active:focus {\n text-shadow: 0 -1px 0 #286090;\n background-image: -webkit-linear-gradient(top, #337ab7 0%, #2b669a 100%);\n background-image: -o-linear-gradient(top, #337ab7 0%, #2b669a 100%);\n background-image: linear-gradient(to bottom, #337ab7 0%, #2b669a 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff337ab7', endColorstr='#ff2b669a', GradientType=0);\n border-color: #2b669a;\n}\n.list-group-item.active .badge,\n.list-group-item.active:hover .badge,\n.list-group-item.active:focus .badge {\n text-shadow: none;\n}\n.panel {\n -webkit-box-shadow: 0 1px 2px rgba(0, 0, 0, 0.05);\n box-shadow: 0 1px 2px rgba(0, 0, 0, 0.05);\n}\n.panel-default > .panel-heading {\n background-image: -webkit-linear-gradient(top, #f5f5f5 0%, #e8e8e8 100%);\n background-image: -o-linear-gradient(top, #f5f5f5 0%, #e8e8e8 100%);\n background-image: linear-gradient(to bottom, #f5f5f5 0%, #e8e8e8 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff5f5f5', endColorstr='#ffe8e8e8', GradientType=0);\n}\n.panel-primary > .panel-heading {\n background-image: -webkit-linear-gradient(top, #337ab7 0%, #2e6da4 100%);\n background-image: -o-linear-gradient(top, #337ab7 0%, #2e6da4 100%);\n background-image: linear-gradient(to bottom, #337ab7 0%, #2e6da4 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff337ab7', endColorstr='#ff2e6da4', GradientType=0);\n}\n.panel-success > .panel-heading {\n background-image: -webkit-linear-gradient(top, #dff0d8 0%, #d0e9c6 100%);\n background-image: -o-linear-gradient(top, #dff0d8 0%, #d0e9c6 100%);\n background-image: linear-gradient(to bottom, #dff0d8 0%, #d0e9c6 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffdff0d8', endColorstr='#ffd0e9c6', GradientType=0);\n}\n.panel-info > .panel-heading {\n background-image: -webkit-linear-gradient(top, #d9edf7 0%, #c4e3f3 100%);\n background-image: -o-linear-gradient(top, #d9edf7 0%, #c4e3f3 100%);\n background-image: linear-gradient(to bottom, #d9edf7 0%, #c4e3f3 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffd9edf7', endColorstr='#ffc4e3f3', GradientType=0);\n}\n.panel-warning > .panel-heading {\n background-image: -webkit-linear-gradient(top, #fcf8e3 0%, #faf2cc 100%);\n background-image: -o-linear-gradient(top, #fcf8e3 0%, #faf2cc 100%);\n background-image: linear-gradient(to bottom, #fcf8e3 0%, #faf2cc 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fffcf8e3', endColorstr='#fffaf2cc', GradientType=0);\n}\n.panel-danger > .panel-heading {\n background-image: -webkit-linear-gradient(top, #f2dede 0%, #ebcccc 100%);\n background-image: -o-linear-gradient(top, #f2dede 0%, #ebcccc 100%);\n background-image: linear-gradient(to bottom, #f2dede 0%, #ebcccc 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff2dede', endColorstr='#ffebcccc', GradientType=0);\n}\n.well {\n background-image: -webkit-linear-gradient(top, #e8e8e8 0%, #f5f5f5 100%);\n background-image: -o-linear-gradient(top, #e8e8e8 0%, #f5f5f5 100%);\n background-image: linear-gradient(to bottom, #e8e8e8 0%, #f5f5f5 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffe8e8e8', endColorstr='#fff5f5f5', GradientType=0);\n border-color: #dcdcdc;\n -webkit-box-shadow: inset 0 1px 3px rgba(0, 0, 0, 0.05), 0 1px 0 rgba(255, 255, 255, 0.1);\n box-shadow: inset 0 1px 3px rgba(0, 0, 0, 0.05), 0 1px 0 rgba(255, 255, 255, 0.1);\n}\n/*# sourceMappingURL=bootstrap-theme.css.map */","/*!\n * Bootstrap v3.3.7 (http://getbootstrap.com)\n * Copyright 2011-2016 Twitter, Inc.\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)\n */\n\n//\n// Load core variables and mixins\n// --------------------------------------------------\n\n@import \"variables.less\";\n@import \"mixins.less\";\n\n\n//\n// Buttons\n// --------------------------------------------------\n\n// Common styles\n.btn-default,\n.btn-primary,\n.btn-success,\n.btn-info,\n.btn-warning,\n.btn-danger {\n text-shadow: 0 -1px 0 rgba(0,0,0,.2);\n @shadow: inset 0 1px 0 rgba(255,255,255,.15), 0 1px 1px rgba(0,0,0,.075);\n .box-shadow(@shadow);\n\n // Reset the shadow\n &:active,\n &.active {\n .box-shadow(inset 0 3px 5px rgba(0,0,0,.125));\n }\n\n &.disabled,\n &[disabled],\n fieldset[disabled] & {\n .box-shadow(none);\n }\n\n .badge {\n text-shadow: none;\n }\n}\n\n// Mixin for generating new styles\n.btn-styles(@btn-color: #555) {\n #gradient > .vertical(@start-color: @btn-color; @end-color: darken(@btn-color, 12%));\n .reset-filter(); // Disable gradients for IE9 because filter bleeds through rounded corners; see https://github.com/twbs/bootstrap/issues/10620\n background-repeat: repeat-x;\n border-color: darken(@btn-color, 14%);\n\n &:hover,\n &:focus {\n background-color: darken(@btn-color, 12%);\n background-position: 0 -15px;\n }\n\n &:active,\n &.active {\n background-color: darken(@btn-color, 12%);\n border-color: darken(@btn-color, 14%);\n }\n\n &.disabled,\n &[disabled],\n fieldset[disabled] & {\n &,\n &:hover,\n &:focus,\n &.focus,\n &:active,\n &.active {\n background-color: darken(@btn-color, 12%);\n background-image: none;\n }\n }\n}\n\n// Common styles\n.btn {\n // Remove the gradient for the pressed/active state\n &:active,\n &.active {\n background-image: none;\n }\n}\n\n// Apply the mixin to the buttons\n.btn-default { .btn-styles(@btn-default-bg); text-shadow: 0 1px 0 #fff; border-color: #ccc; }\n.btn-primary { .btn-styles(@btn-primary-bg); }\n.btn-success { .btn-styles(@btn-success-bg); }\n.btn-info { .btn-styles(@btn-info-bg); }\n.btn-warning { .btn-styles(@btn-warning-bg); }\n.btn-danger { .btn-styles(@btn-danger-bg); }\n\n\n//\n// Images\n// --------------------------------------------------\n\n.thumbnail,\n.img-thumbnail {\n .box-shadow(0 1px 2px rgba(0,0,0,.075));\n}\n\n\n//\n// Dropdowns\n// --------------------------------------------------\n\n.dropdown-menu > li > a:hover,\n.dropdown-menu > li > a:focus {\n #gradient > .vertical(@start-color: @dropdown-link-hover-bg; @end-color: darken(@dropdown-link-hover-bg, 5%));\n background-color: darken(@dropdown-link-hover-bg, 5%);\n}\n.dropdown-menu > .active > a,\n.dropdown-menu > .active > a:hover,\n.dropdown-menu > .active > a:focus {\n #gradient > .vertical(@start-color: @dropdown-link-active-bg; @end-color: darken(@dropdown-link-active-bg, 5%));\n background-color: darken(@dropdown-link-active-bg, 5%);\n}\n\n\n//\n// Navbar\n// --------------------------------------------------\n\n// Default navbar\n.navbar-default {\n #gradient > .vertical(@start-color: lighten(@navbar-default-bg, 10%); @end-color: @navbar-default-bg);\n .reset-filter(); // Remove gradient in IE<10 to fix bug where dropdowns don't get triggered\n border-radius: @navbar-border-radius;\n @shadow: inset 0 1px 0 rgba(255,255,255,.15), 0 1px 5px rgba(0,0,0,.075);\n .box-shadow(@shadow);\n\n .navbar-nav > .open > a,\n .navbar-nav > .active > a {\n #gradient > .vertical(@start-color: darken(@navbar-default-link-active-bg, 5%); @end-color: darken(@navbar-default-link-active-bg, 2%));\n .box-shadow(inset 0 3px 9px rgba(0,0,0,.075));\n }\n}\n.navbar-brand,\n.navbar-nav > li > a {\n text-shadow: 0 1px 0 rgba(255,255,255,.25);\n}\n\n// Inverted navbar\n.navbar-inverse {\n #gradient > .vertical(@start-color: lighten(@navbar-inverse-bg, 10%); @end-color: @navbar-inverse-bg);\n .reset-filter(); // Remove gradient in IE<10 to fix bug where dropdowns don't get triggered; see https://github.com/twbs/bootstrap/issues/10257\n border-radius: @navbar-border-radius;\n .navbar-nav > .open > a,\n .navbar-nav > .active > a {\n #gradient > .vertical(@start-color: @navbar-inverse-link-active-bg; @end-color: lighten(@navbar-inverse-link-active-bg, 2.5%));\n .box-shadow(inset 0 3px 9px rgba(0,0,0,.25));\n }\n\n .navbar-brand,\n .navbar-nav > li > a {\n text-shadow: 0 -1px 0 rgba(0,0,0,.25);\n }\n}\n\n// Undo rounded corners in static and fixed navbars\n.navbar-static-top,\n.navbar-fixed-top,\n.navbar-fixed-bottom {\n border-radius: 0;\n}\n\n// Fix active state of dropdown items in collapsed mode\n@media (max-width: @grid-float-breakpoint-max) {\n .navbar .navbar-nav .open .dropdown-menu > .active > a {\n &,\n &:hover,\n &:focus {\n color: #fff;\n #gradient > .vertical(@start-color: @dropdown-link-active-bg; @end-color: darken(@dropdown-link-active-bg, 5%));\n }\n }\n}\n\n\n//\n// Alerts\n// --------------------------------------------------\n\n// Common styles\n.alert {\n text-shadow: 0 1px 0 rgba(255,255,255,.2);\n @shadow: inset 0 1px 0 rgba(255,255,255,.25), 0 1px 2px rgba(0,0,0,.05);\n .box-shadow(@shadow);\n}\n\n// Mixin for generating new styles\n.alert-styles(@color) {\n #gradient > .vertical(@start-color: @color; @end-color: darken(@color, 7.5%));\n border-color: darken(@color, 15%);\n}\n\n// Apply the mixin to the alerts\n.alert-success { .alert-styles(@alert-success-bg); }\n.alert-info { .alert-styles(@alert-info-bg); }\n.alert-warning { .alert-styles(@alert-warning-bg); }\n.alert-danger { .alert-styles(@alert-danger-bg); }\n\n\n//\n// Progress bars\n// --------------------------------------------------\n\n// Give the progress background some depth\n.progress {\n #gradient > .vertical(@start-color: darken(@progress-bg, 4%); @end-color: @progress-bg)\n}\n\n// Mixin for generating new styles\n.progress-bar-styles(@color) {\n #gradient > .vertical(@start-color: @color; @end-color: darken(@color, 10%));\n}\n\n// Apply the mixin to the progress bars\n.progress-bar { .progress-bar-styles(@progress-bar-bg); }\n.progress-bar-success { .progress-bar-styles(@progress-bar-success-bg); }\n.progress-bar-info { .progress-bar-styles(@progress-bar-info-bg); }\n.progress-bar-warning { .progress-bar-styles(@progress-bar-warning-bg); }\n.progress-bar-danger { .progress-bar-styles(@progress-bar-danger-bg); }\n\n// Reset the striped class because our mixins don't do multiple gradients and\n// the above custom styles override the new `.progress-bar-striped` in v3.2.0.\n.progress-bar-striped {\n #gradient > .striped();\n}\n\n\n//\n// List groups\n// --------------------------------------------------\n\n.list-group {\n border-radius: @border-radius-base;\n .box-shadow(0 1px 2px rgba(0,0,0,.075));\n}\n.list-group-item.active,\n.list-group-item.active:hover,\n.list-group-item.active:focus {\n text-shadow: 0 -1px 0 darken(@list-group-active-bg, 10%);\n #gradient > .vertical(@start-color: @list-group-active-bg; @end-color: darken(@list-group-active-bg, 7.5%));\n border-color: darken(@list-group-active-border, 7.5%);\n\n .badge {\n text-shadow: none;\n }\n}\n\n\n//\n// Panels\n// --------------------------------------------------\n\n// Common styles\n.panel {\n .box-shadow(0 1px 2px rgba(0,0,0,.05));\n}\n\n// Mixin for generating new styles\n.panel-heading-styles(@color) {\n #gradient > .vertical(@start-color: @color; @end-color: darken(@color, 5%));\n}\n\n// Apply the mixin to the panel headings only\n.panel-default > .panel-heading { .panel-heading-styles(@panel-default-heading-bg); }\n.panel-primary > .panel-heading { .panel-heading-styles(@panel-primary-heading-bg); }\n.panel-success > .panel-heading { .panel-heading-styles(@panel-success-heading-bg); }\n.panel-info > .panel-heading { .panel-heading-styles(@panel-info-heading-bg); }\n.panel-warning > .panel-heading { .panel-heading-styles(@panel-warning-heading-bg); }\n.panel-danger > .panel-heading { .panel-heading-styles(@panel-danger-heading-bg); }\n\n\n//\n// Wells\n// --------------------------------------------------\n\n.well {\n #gradient > .vertical(@start-color: darken(@well-bg, 5%); @end-color: @well-bg);\n border-color: darken(@well-bg, 10%);\n @shadow: inset 0 1px 3px rgba(0,0,0,.05), 0 1px 0 rgba(255,255,255,.1);\n .box-shadow(@shadow);\n}\n","// Vendor Prefixes\n//\n// All vendor mixins are deprecated as of v3.2.0 due to the introduction of\n// Autoprefixer in our Gruntfile. They have been removed in v4.\n\n// - Animations\n// - Backface visibility\n// - Box shadow\n// - Box sizing\n// - Content columns\n// - Hyphens\n// - Placeholder text\n// - Transformations\n// - Transitions\n// - User Select\n\n\n// Animations\n.animation(@animation) {\n -webkit-animation: @animation;\n -o-animation: @animation;\n animation: @animation;\n}\n.animation-name(@name) {\n -webkit-animation-name: @name;\n animation-name: @name;\n}\n.animation-duration(@duration) {\n -webkit-animation-duration: @duration;\n animation-duration: @duration;\n}\n.animation-timing-function(@timing-function) {\n -webkit-animation-timing-function: @timing-function;\n animation-timing-function: @timing-function;\n}\n.animation-delay(@delay) {\n -webkit-animation-delay: @delay;\n animation-delay: @delay;\n}\n.animation-iteration-count(@iteration-count) {\n -webkit-animation-iteration-count: @iteration-count;\n animation-iteration-count: @iteration-count;\n}\n.animation-direction(@direction) {\n -webkit-animation-direction: @direction;\n animation-direction: @direction;\n}\n.animation-fill-mode(@fill-mode) {\n -webkit-animation-fill-mode: @fill-mode;\n animation-fill-mode: @fill-mode;\n}\n\n// Backface visibility\n// Prevent browsers from flickering when using CSS 3D transforms.\n// Default value is `visible`, but can be changed to `hidden`\n\n.backface-visibility(@visibility) {\n -webkit-backface-visibility: @visibility;\n -moz-backface-visibility: @visibility;\n backface-visibility: @visibility;\n}\n\n// Drop shadows\n//\n// Note: Deprecated `.box-shadow()` as of v3.1.0 since all of Bootstrap's\n// supported browsers that have box shadow capabilities now support it.\n\n.box-shadow(@shadow) {\n -webkit-box-shadow: @shadow; // iOS <4.3 & Android <4.1\n box-shadow: @shadow;\n}\n\n// Box sizing\n.box-sizing(@boxmodel) {\n -webkit-box-sizing: @boxmodel;\n -moz-box-sizing: @boxmodel;\n box-sizing: @boxmodel;\n}\n\n// CSS3 Content Columns\n.content-columns(@column-count; @column-gap: @grid-gutter-width) {\n -webkit-column-count: @column-count;\n -moz-column-count: @column-count;\n column-count: @column-count;\n -webkit-column-gap: @column-gap;\n -moz-column-gap: @column-gap;\n column-gap: @column-gap;\n}\n\n// Optional hyphenation\n.hyphens(@mode: auto) {\n word-wrap: break-word;\n -webkit-hyphens: @mode;\n -moz-hyphens: @mode;\n -ms-hyphens: @mode; // IE10+\n -o-hyphens: @mode;\n hyphens: @mode;\n}\n\n// Placeholder text\n.placeholder(@color: @input-color-placeholder) {\n // Firefox\n &::-moz-placeholder {\n color: @color;\n opacity: 1; // Override Firefox's unusual default opacity; see https://github.com/twbs/bootstrap/pull/11526\n }\n &:-ms-input-placeholder { color: @color; } // Internet Explorer 10+\n &::-webkit-input-placeholder { color: @color; } // Safari and Chrome\n}\n\n// Transformations\n.scale(@ratio) {\n -webkit-transform: scale(@ratio);\n -ms-transform: scale(@ratio); // IE9 only\n -o-transform: scale(@ratio);\n transform: scale(@ratio);\n}\n.scale(@ratioX; @ratioY) {\n -webkit-transform: scale(@ratioX, @ratioY);\n -ms-transform: scale(@ratioX, @ratioY); // IE9 only\n -o-transform: scale(@ratioX, @ratioY);\n transform: scale(@ratioX, @ratioY);\n}\n.scaleX(@ratio) {\n -webkit-transform: scaleX(@ratio);\n -ms-transform: scaleX(@ratio); // IE9 only\n -o-transform: scaleX(@ratio);\n transform: scaleX(@ratio);\n}\n.scaleY(@ratio) {\n -webkit-transform: scaleY(@ratio);\n -ms-transform: scaleY(@ratio); // IE9 only\n -o-transform: scaleY(@ratio);\n transform: scaleY(@ratio);\n}\n.skew(@x; @y) {\n -webkit-transform: skewX(@x) skewY(@y);\n -ms-transform: skewX(@x) skewY(@y); // See https://github.com/twbs/bootstrap/issues/4885; IE9+\n -o-transform: skewX(@x) skewY(@y);\n transform: skewX(@x) skewY(@y);\n}\n.translate(@x; @y) {\n -webkit-transform: translate(@x, @y);\n -ms-transform: translate(@x, @y); // IE9 only\n -o-transform: translate(@x, @y);\n transform: translate(@x, @y);\n}\n.translate3d(@x; @y; @z) {\n -webkit-transform: translate3d(@x, @y, @z);\n transform: translate3d(@x, @y, @z);\n}\n.rotate(@degrees) {\n -webkit-transform: rotate(@degrees);\n -ms-transform: rotate(@degrees); // IE9 only\n -o-transform: rotate(@degrees);\n transform: rotate(@degrees);\n}\n.rotateX(@degrees) {\n -webkit-transform: rotateX(@degrees);\n -ms-transform: rotateX(@degrees); // IE9 only\n -o-transform: rotateX(@degrees);\n transform: rotateX(@degrees);\n}\n.rotateY(@degrees) {\n -webkit-transform: rotateY(@degrees);\n -ms-transform: rotateY(@degrees); // IE9 only\n -o-transform: rotateY(@degrees);\n transform: rotateY(@degrees);\n}\n.perspective(@perspective) {\n -webkit-perspective: @perspective;\n -moz-perspective: @perspective;\n perspective: @perspective;\n}\n.perspective-origin(@perspective) {\n -webkit-perspective-origin: @perspective;\n -moz-perspective-origin: @perspective;\n perspective-origin: @perspective;\n}\n.transform-origin(@origin) {\n -webkit-transform-origin: @origin;\n -moz-transform-origin: @origin;\n -ms-transform-origin: @origin; // IE9 only\n transform-origin: @origin;\n}\n\n\n// Transitions\n\n.transition(@transition) {\n -webkit-transition: @transition;\n -o-transition: @transition;\n transition: @transition;\n}\n.transition-property(@transition-property) {\n -webkit-transition-property: @transition-property;\n transition-property: @transition-property;\n}\n.transition-delay(@transition-delay) {\n -webkit-transition-delay: @transition-delay;\n transition-delay: @transition-delay;\n}\n.transition-duration(@transition-duration) {\n -webkit-transition-duration: @transition-duration;\n transition-duration: @transition-duration;\n}\n.transition-timing-function(@timing-function) {\n -webkit-transition-timing-function: @timing-function;\n transition-timing-function: @timing-function;\n}\n.transition-transform(@transition) {\n -webkit-transition: -webkit-transform @transition;\n -moz-transition: -moz-transform @transition;\n -o-transition: -o-transform @transition;\n transition: transform @transition;\n}\n\n\n// User select\n// For selecting text on the page\n\n.user-select(@select) {\n -webkit-user-select: @select;\n -moz-user-select: @select;\n -ms-user-select: @select; // IE10+\n user-select: @select;\n}\n","// Gradients\n\n#gradient {\n\n // Horizontal gradient, from left to right\n //\n // Creates two color stops, start and end, by specifying a color and position for each color stop.\n // Color stops are not available in IE9 and below.\n .horizontal(@start-color: #555; @end-color: #333; @start-percent: 0%; @end-percent: 100%) {\n background-image: -webkit-linear-gradient(left, @start-color @start-percent, @end-color @end-percent); // Safari 5.1-6, Chrome 10+\n background-image: -o-linear-gradient(left, @start-color @start-percent, @end-color @end-percent); // Opera 12\n background-image: linear-gradient(to right, @start-color @start-percent, @end-color @end-percent); // Standard, IE10, Firefox 16+, Opera 12.10+, Safari 7+, Chrome 26+\n background-repeat: repeat-x;\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(startColorstr='%d', endColorstr='%d', GradientType=1)\",argb(@start-color),argb(@end-color))); // IE9 and down\n }\n\n // Vertical gradient, from top to bottom\n //\n // Creates two color stops, start and end, by specifying a color and position for each color stop.\n // Color stops are not available in IE9 and below.\n .vertical(@start-color: #555; @end-color: #333; @start-percent: 0%; @end-percent: 100%) {\n background-image: -webkit-linear-gradient(top, @start-color @start-percent, @end-color @end-percent); // Safari 5.1-6, Chrome 10+\n background-image: -o-linear-gradient(top, @start-color @start-percent, @end-color @end-percent); // Opera 12\n background-image: linear-gradient(to bottom, @start-color @start-percent, @end-color @end-percent); // Standard, IE10, Firefox 16+, Opera 12.10+, Safari 7+, Chrome 26+\n background-repeat: repeat-x;\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(startColorstr='%d', endColorstr='%d', GradientType=0)\",argb(@start-color),argb(@end-color))); // IE9 and down\n }\n\n .directional(@start-color: #555; @end-color: #333; @deg: 45deg) {\n background-repeat: repeat-x;\n background-image: -webkit-linear-gradient(@deg, @start-color, @end-color); // Safari 5.1-6, Chrome 10+\n background-image: -o-linear-gradient(@deg, @start-color, @end-color); // Opera 12\n background-image: linear-gradient(@deg, @start-color, @end-color); // Standard, IE10, Firefox 16+, Opera 12.10+, Safari 7+, Chrome 26+\n }\n .horizontal-three-colors(@start-color: #00b3ee; @mid-color: #7a43b6; @color-stop: 50%; @end-color: #c3325f) {\n background-image: -webkit-linear-gradient(left, @start-color, @mid-color @color-stop, @end-color);\n background-image: -o-linear-gradient(left, @start-color, @mid-color @color-stop, @end-color);\n background-image: linear-gradient(to right, @start-color, @mid-color @color-stop, @end-color);\n background-repeat: no-repeat;\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(startColorstr='%d', endColorstr='%d', GradientType=1)\",argb(@start-color),argb(@end-color))); // IE9 and down, gets no color-stop at all for proper fallback\n }\n .vertical-three-colors(@start-color: #00b3ee; @mid-color: #7a43b6; @color-stop: 50%; @end-color: #c3325f) {\n background-image: -webkit-linear-gradient(@start-color, @mid-color @color-stop, @end-color);\n background-image: -o-linear-gradient(@start-color, @mid-color @color-stop, @end-color);\n background-image: linear-gradient(@start-color, @mid-color @color-stop, @end-color);\n background-repeat: no-repeat;\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(startColorstr='%d', endColorstr='%d', GradientType=0)\",argb(@start-color),argb(@end-color))); // IE9 and down, gets no color-stop at all for proper fallback\n }\n .radial(@inner-color: #555; @outer-color: #333) {\n background-image: -webkit-radial-gradient(circle, @inner-color, @outer-color);\n background-image: radial-gradient(circle, @inner-color, @outer-color);\n background-repeat: no-repeat;\n }\n .striped(@color: rgba(255,255,255,.15); @angle: 45deg) {\n background-image: -webkit-linear-gradient(@angle, @color 25%, transparent 25%, transparent 50%, @color 50%, @color 75%, transparent 75%, transparent);\n background-image: -o-linear-gradient(@angle, @color 25%, transparent 25%, transparent 50%, @color 50%, @color 75%, transparent 75%, transparent);\n background-image: linear-gradient(@angle, @color 25%, transparent 25%, transparent 50%, @color 50%, @color 75%, transparent 75%, transparent);\n }\n}\n","// Reset filters for IE\n//\n// When you need to remove a gradient background, do not forget to use this to reset\n// the IE filter for IE9 and below.\n\n.reset-filter() {\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(enabled = false)\"));\n}\n"]} \ No newline at end of file diff --git a/themes/bootstrap/static/bootstrap-3.3.7/css/bootstrap-theme.min.css b/themes/bootstrap/static/bootstrap-3.3.7/css/bootstrap-theme.min.css deleted file mode 100644 index 5e394019..00000000 --- a/themes/bootstrap/static/bootstrap-3.3.7/css/bootstrap-theme.min.css +++ /dev/null @@ -1,6 +0,0 @@ -/*! - * Bootstrap v3.3.7 (http://getbootstrap.com) - * Copyright 2011-2016 Twitter, Inc. - * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE) - */.btn-danger,.btn-default,.btn-info,.btn-primary,.btn-success,.btn-warning{text-shadow:0 -1px 0 rgba(0,0,0,.2);-webkit-box-shadow:inset 0 1px 0 rgba(255,255,255,.15),0 1px 1px rgba(0,0,0,.075);box-shadow:inset 0 1px 0 rgba(255,255,255,.15),0 1px 1px rgba(0,0,0,.075)}.btn-danger.active,.btn-danger:active,.btn-default.active,.btn-default:active,.btn-info.active,.btn-info:active,.btn-primary.active,.btn-primary:active,.btn-success.active,.btn-success:active,.btn-warning.active,.btn-warning:active{-webkit-box-shadow:inset 0 3px 5px 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// iOS <4.3 & Android <4.1\n box-shadow: @shadow;\n}\n\n// Box sizing\n.box-sizing(@boxmodel) {\n -webkit-box-sizing: @boxmodel;\n -moz-box-sizing: @boxmodel;\n box-sizing: @boxmodel;\n}\n\n// CSS3 Content Columns\n.content-columns(@column-count; @column-gap: @grid-gutter-width) {\n -webkit-column-count: @column-count;\n -moz-column-count: @column-count;\n column-count: @column-count;\n -webkit-column-gap: @column-gap;\n -moz-column-gap: @column-gap;\n column-gap: @column-gap;\n}\n\n// Optional hyphenation\n.hyphens(@mode: auto) {\n word-wrap: break-word;\n -webkit-hyphens: @mode;\n -moz-hyphens: @mode;\n -ms-hyphens: @mode; // IE10+\n -o-hyphens: @mode;\n hyphens: @mode;\n}\n\n// Placeholder text\n.placeholder(@color: @input-color-placeholder) {\n // Firefox\n &::-moz-placeholder {\n color: @color;\n opacity: 1; // Override Firefox's unusual default opacity; see https://github.com/twbs/bootstrap/pull/11526\n }\n &:-ms-input-placeholder { color: @color; } // Internet Explorer 10+\n &::-webkit-input-placeholder { color: @color; } // Safari and Chrome\n}\n\n// Transformations\n.scale(@ratio) {\n -webkit-transform: scale(@ratio);\n -ms-transform: scale(@ratio); // IE9 only\n -o-transform: scale(@ratio);\n transform: scale(@ratio);\n}\n.scale(@ratioX; @ratioY) {\n -webkit-transform: scale(@ratioX, @ratioY);\n -ms-transform: scale(@ratioX, @ratioY); // IE9 only\n -o-transform: scale(@ratioX, @ratioY);\n transform: scale(@ratioX, @ratioY);\n}\n.scaleX(@ratio) {\n -webkit-transform: scaleX(@ratio);\n -ms-transform: scaleX(@ratio); // IE9 only\n -o-transform: scaleX(@ratio);\n transform: scaleX(@ratio);\n}\n.scaleY(@ratio) {\n -webkit-transform: scaleY(@ratio);\n -ms-transform: scaleY(@ratio); // IE9 only\n -o-transform: scaleY(@ratio);\n transform: scaleY(@ratio);\n}\n.skew(@x; @y) {\n -webkit-transform: skewX(@x) skewY(@y);\n -ms-transform: skewX(@x) skewY(@y); // See https://github.com/twbs/bootstrap/issues/4885; IE9+\n -o-transform: skewX(@x) skewY(@y);\n transform: skewX(@x) skewY(@y);\n}\n.translate(@x; @y) {\n -webkit-transform: translate(@x, @y);\n -ms-transform: translate(@x, @y); // IE9 only\n -o-transform: translate(@x, @y);\n transform: translate(@x, @y);\n}\n.translate3d(@x; @y; @z) {\n -webkit-transform: translate3d(@x, @y, @z);\n transform: translate3d(@x, @y, @z);\n}\n.rotate(@degrees) {\n -webkit-transform: rotate(@degrees);\n -ms-transform: rotate(@degrees); // IE9 only\n -o-transform: rotate(@degrees);\n transform: rotate(@degrees);\n}\n.rotateX(@degrees) {\n -webkit-transform: rotateX(@degrees);\n -ms-transform: rotateX(@degrees); // IE9 only\n -o-transform: rotateX(@degrees);\n transform: rotateX(@degrees);\n}\n.rotateY(@degrees) {\n -webkit-transform: rotateY(@degrees);\n -ms-transform: rotateY(@degrees); // IE9 only\n -o-transform: rotateY(@degrees);\n transform: rotateY(@degrees);\n}\n.perspective(@perspective) {\n -webkit-perspective: @perspective;\n -moz-perspective: @perspective;\n perspective: @perspective;\n}\n.perspective-origin(@perspective) {\n -webkit-perspective-origin: @perspective;\n -moz-perspective-origin: @perspective;\n perspective-origin: @perspective;\n}\n.transform-origin(@origin) {\n -webkit-transform-origin: @origin;\n -moz-transform-origin: @origin;\n -ms-transform-origin: @origin; // IE9 only\n transform-origin: @origin;\n}\n\n\n// Transitions\n\n.transition(@transition) {\n -webkit-transition: @transition;\n -o-transition: @transition;\n transition: @transition;\n}\n.transition-property(@transition-property) {\n -webkit-transition-property: @transition-property;\n transition-property: @transition-property;\n}\n.transition-delay(@transition-delay) {\n -webkit-transition-delay: @transition-delay;\n transition-delay: @transition-delay;\n}\n.transition-duration(@transition-duration) {\n -webkit-transition-duration: @transition-duration;\n transition-duration: @transition-duration;\n}\n.transition-timing-function(@timing-function) {\n -webkit-transition-timing-function: @timing-function;\n transition-timing-function: @timing-function;\n}\n.transition-transform(@transition) {\n -webkit-transition: -webkit-transform @transition;\n -moz-transition: -moz-transform @transition;\n -o-transition: -o-transform @transition;\n transition: transform @transition;\n}\n\n\n// User select\n// For selecting text on the page\n\n.user-select(@select) {\n -webkit-user-select: @select;\n -moz-user-select: @select;\n -ms-user-select: @select; // IE10+\n user-select: @select;\n}\n","// Gradients\n\n#gradient {\n\n // Horizontal gradient, from left to right\n //\n // Creates two color stops, start and end, by specifying a color and position for each color stop.\n // Color stops are not available in IE9 and below.\n .horizontal(@start-color: #555; @end-color: #333; @start-percent: 0%; @end-percent: 100%) {\n background-image: -webkit-linear-gradient(left, @start-color @start-percent, @end-color @end-percent); // Safari 5.1-6, Chrome 10+\n background-image: -o-linear-gradient(left, @start-color @start-percent, @end-color @end-percent); // Opera 12\n background-image: linear-gradient(to right, @start-color @start-percent, @end-color @end-percent); // Standard, IE10, Firefox 16+, Opera 12.10+, Safari 7+, Chrome 26+\n background-repeat: repeat-x;\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(startColorstr='%d', endColorstr='%d', GradientType=1)\",argb(@start-color),argb(@end-color))); // IE9 and down\n }\n\n // Vertical gradient, from top to bottom\n //\n // Creates two color stops, start and end, by specifying a color and position for each color stop.\n // Color stops are not available in IE9 and below.\n .vertical(@start-color: #555; @end-color: #333; @start-percent: 0%; @end-percent: 100%) {\n background-image: -webkit-linear-gradient(top, @start-color @start-percent, @end-color @end-percent); // Safari 5.1-6, Chrome 10+\n background-image: -o-linear-gradient(top, @start-color @start-percent, @end-color @end-percent); // Opera 12\n background-image: linear-gradient(to bottom, @start-color @start-percent, @end-color @end-percent); // Standard, IE10, Firefox 16+, Opera 12.10+, Safari 7+, Chrome 26+\n background-repeat: repeat-x;\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(startColorstr='%d', endColorstr='%d', GradientType=0)\",argb(@start-color),argb(@end-color))); // IE9 and down\n }\n\n .directional(@start-color: #555; @end-color: #333; @deg: 45deg) {\n background-repeat: repeat-x;\n background-image: -webkit-linear-gradient(@deg, @start-color, @end-color); // Safari 5.1-6, Chrome 10+\n background-image: -o-linear-gradient(@deg, @start-color, @end-color); // Opera 12\n background-image: linear-gradient(@deg, @start-color, @end-color); // Standard, IE10, Firefox 16+, Opera 12.10+, Safari 7+, Chrome 26+\n }\n .horizontal-three-colors(@start-color: #00b3ee; @mid-color: #7a43b6; @color-stop: 50%; @end-color: #c3325f) {\n background-image: -webkit-linear-gradient(left, @start-color, @mid-color @color-stop, @end-color);\n background-image: -o-linear-gradient(left, @start-color, @mid-color @color-stop, @end-color);\n background-image: linear-gradient(to right, @start-color, @mid-color @color-stop, @end-color);\n background-repeat: no-repeat;\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(startColorstr='%d', endColorstr='%d', GradientType=1)\",argb(@start-color),argb(@end-color))); // IE9 and down, gets no color-stop at all for proper fallback\n }\n .vertical-three-colors(@start-color: #00b3ee; @mid-color: #7a43b6; @color-stop: 50%; @end-color: #c3325f) {\n background-image: -webkit-linear-gradient(@start-color, @mid-color @color-stop, @end-color);\n background-image: -o-linear-gradient(@start-color, @mid-color @color-stop, @end-color);\n background-image: linear-gradient(@start-color, @mid-color @color-stop, @end-color);\n background-repeat: no-repeat;\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(startColorstr='%d', endColorstr='%d', GradientType=0)\",argb(@start-color),argb(@end-color))); // IE9 and down, gets no color-stop at all for proper fallback\n }\n .radial(@inner-color: #555; @outer-color: #333) {\n background-image: -webkit-radial-gradient(circle, @inner-color, @outer-color);\n background-image: radial-gradient(circle, @inner-color, @outer-color);\n background-repeat: no-repeat;\n }\n .striped(@color: rgba(255,255,255,.15); @angle: 45deg) {\n background-image: -webkit-linear-gradient(@angle, @color 25%, transparent 25%, transparent 50%, @color 50%, @color 75%, transparent 75%, transparent);\n background-image: -o-linear-gradient(@angle, @color 25%, transparent 25%, transparent 50%, @color 50%, @color 75%, transparent 75%, transparent);\n background-image: linear-gradient(@angle, @color 25%, transparent 25%, transparent 50%, @color 50%, @color 75%, transparent 75%, transparent);\n }\n}\n","// Reset filters for IE\n//\n// When you need to remove a gradient background, do not forget to use this to reset\n// the IE filter for IE9 and below.\n\n.reset-filter() {\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(enabled = false)\"));\n}\n"]} \ No newline at end of file diff --git a/themes/bootstrap/static/bootstrap-3.3.7/css/bootstrap.css b/themes/bootstrap/static/bootstrap-3.3.7/css/bootstrap.css deleted file mode 100644 index 6167622c..00000000 --- a/themes/bootstrap/static/bootstrap-3.3.7/css/bootstrap.css +++ /dev/null @@ -1,6757 +0,0 @@ -/*! - * Bootstrap v3.3.7 (http://getbootstrap.com) - * Copyright 2011-2016 Twitter, Inc. - * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE) - */ -/*! normalize.css v3.0.3 | MIT License | github.com/necolas/normalize.css */ -html { - font-family: sans-serif; - -webkit-text-size-adjust: 100%; - -ms-text-size-adjust: 100%; -} -body { - margin: 0; -} -article, -aside, -details, -figcaption, -figure, -footer, -header, -hgroup, -main, -menu, -nav, -section, -summary { - display: block; -} -audio, -canvas, -progress, -video { - display: inline-block; - vertical-align: baseline; -} -audio:not([controls]) { - display: none; - height: 0; -} -[hidden], -template { - display: none; -} -a { - background-color: transparent; -} -a:active, -a:hover { - outline: 0; -} -abbr[title] { - border-bottom: 1px dotted; -} -b, -strong { - font-weight: bold; -} -dfn { - font-style: italic; -} -h1 { - margin: .67em 0; - font-size: 2em; -} -mark { - color: #000; - background: #ff0; -} -small { - font-size: 80%; -} -sub, -sup { - position: relative; - font-size: 75%; - line-height: 0; - vertical-align: baseline; -} -sup { - top: -.5em; -} -sub { - bottom: -.25em; -} -img { - border: 0; -} -svg:not(:root) { - overflow: hidden; -} -figure { - margin: 1em 40px; -} -hr { - height: 0; - -webkit-box-sizing: content-box; - -moz-box-sizing: content-box; - box-sizing: content-box; -} -pre { - overflow: auto; -} -code, -kbd, -pre, -samp { - font-family: monospace, monospace; - font-size: 1em; -} -button, -input, -optgroup, -select, -textarea { - margin: 0; - font: inherit; - color: inherit; -} -button { - overflow: visible; -} -button, -select { - text-transform: none; -} -button, -html input[type="button"], -input[type="reset"], -input[type="submit"] { - -webkit-appearance: button; - cursor: pointer; -} -button[disabled], -html input[disabled] { - cursor: default; -} -button::-moz-focus-inner, -input::-moz-focus-inner { - padding: 0; - border: 0; -} -input { - line-height: normal; -} -input[type="checkbox"], -input[type="radio"] { - -webkit-box-sizing: border-box; - -moz-box-sizing: border-box; - box-sizing: border-box; - padding: 0; -} -input[type="number"]::-webkit-inner-spin-button, -input[type="number"]::-webkit-outer-spin-button { - height: auto; -} -input[type="search"] { - -webkit-box-sizing: content-box; - -moz-box-sizing: content-box; - box-sizing: content-box; - -webkit-appearance: textfield; -} -input[type="search"]::-webkit-search-cancel-button, -input[type="search"]::-webkit-search-decoration { - -webkit-appearance: none; -} -fieldset { - padding: .35em .625em .75em; - margin: 0 2px; - border: 1px solid #c0c0c0; -} -legend { - padding: 0; - border: 0; -} -textarea { - overflow: auto; -} -optgroup { - font-weight: bold; -} -table { - border-spacing: 0; - border-collapse: collapse; -} -td, -th { - padding: 0; -} -/*! Source: https://github.com/h5bp/html5-boilerplate/blob/master/src/css/main.css */ -@media print { - *, - *:before, - *:after { - color: #000 !important; - text-shadow: none !important; - background: transparent !important; - -webkit-box-shadow: none !important; - box-shadow: none !important; - } - a, - a:visited { - text-decoration: underline; - } - a[href]:after { - content: " (" attr(href) ")"; - } - abbr[title]:after { - content: " (" attr(title) ")"; - } - a[href^="#"]:after, - a[href^="javascript:"]:after { - content: ""; - } - pre, - blockquote { - border: 1px solid #999; - - page-break-inside: avoid; - } - thead { - display: table-header-group; - } - tr, - img { - page-break-inside: avoid; - } - img { - max-width: 100% !important; - } - p, - h2, - h3 { - orphans: 3; - widows: 3; - } - h2, - h3 { - page-break-after: avoid; - } - .navbar { - display: none; - } - .btn > .caret, - .dropup > .btn > .caret { - border-top-color: #000 !important; - } - .label { - border: 1px solid #000; - } - .table { - border-collapse: collapse !important; - } - .table td, - .table th { - background-color: #fff !important; - } - .table-bordered th, - .table-bordered td { - border: 1px solid #ddd !important; - } -} -@font-face { - font-family: 'Glyphicons Halflings'; - - src: url('../fonts/glyphicons-halflings-regular.eot'); - src: url('../fonts/glyphicons-halflings-regular.eot?#iefix') format('embedded-opentype'), url('../fonts/glyphicons-halflings-regular.woff2') format('woff2'), url('../fonts/glyphicons-halflings-regular.woff') format('woff'), url('../fonts/glyphicons-halflings-regular.ttf') format('truetype'), url('../fonts/glyphicons-halflings-regular.svg#glyphicons_halflingsregular') format('svg'); -} -.glyphicon { - position: relative; - top: 1px; - display: inline-block; - font-family: 'Glyphicons Halflings'; - font-style: normal; - font-weight: normal; - line-height: 1; - - -webkit-font-smoothing: antialiased; - -moz-osx-font-smoothing: grayscale; -} -.glyphicon-asterisk:before { - content: "\002a"; -} -.glyphicon-plus:before { - content: "\002b"; -} -.glyphicon-euro:before, -.glyphicon-eur:before { - content: "\20ac"; -} -.glyphicon-minus:before { - content: "\2212"; -} -.glyphicon-cloud:before { - content: "\2601"; -} -.glyphicon-envelope:before { - content: "\2709"; -} -.glyphicon-pencil:before { - content: "\270f"; -} -.glyphicon-glass:before { - content: "\e001"; -} -.glyphicon-music:before { - content: "\e002"; -} -.glyphicon-search:before { - content: "\e003"; -} -.glyphicon-heart:before { - content: "\e005"; -} -.glyphicon-star:before { - content: "\e006"; -} -.glyphicon-star-empty:before { - content: "\e007"; -} -.glyphicon-user:before { - content: "\e008"; -} -.glyphicon-film:before { - content: "\e009"; -} -.glyphicon-th-large:before { - content: "\e010"; -} -.glyphicon-th:before { - content: "\e011"; -} -.glyphicon-th-list:before { - content: "\e012"; -} -.glyphicon-ok:before { - content: "\e013"; -} -.glyphicon-remove:before { - content: "\e014"; -} -.glyphicon-zoom-in:before { - content: "\e015"; -} -.glyphicon-zoom-out:before { - content: "\e016"; -} -.glyphicon-off:before { - content: "\e017"; -} -.glyphicon-signal:before { - content: "\e018"; -} -.glyphicon-cog:before { - content: "\e019"; -} -.glyphicon-trash:before { - content: "\e020"; -} -.glyphicon-home:before { - content: "\e021"; -} -.glyphicon-file:before { - content: "\e022"; -} -.glyphicon-time:before { - content: "\e023"; -} -.glyphicon-road:before { - content: "\e024"; -} -.glyphicon-download-alt:before { - content: "\e025"; -} -.glyphicon-download:before { - content: "\e026"; -} -.glyphicon-upload:before { - content: "\e027"; -} -.glyphicon-inbox:before { - content: "\e028"; -} -.glyphicon-play-circle:before { - content: "\e029"; -} -.glyphicon-repeat:before { - content: "\e030"; -} -.glyphicon-refresh:before { - content: "\e031"; -} -.glyphicon-list-alt:before { - content: "\e032"; -} -.glyphicon-lock:before { - content: "\e033"; -} -.glyphicon-flag:before { - content: "\e034"; -} -.glyphicon-headphones:before { - content: "\e035"; -} -.glyphicon-volume-off:before { - content: "\e036"; -} -.glyphicon-volume-down:before { - content: "\e037"; -} -.glyphicon-volume-up:before { - content: "\e038"; -} -.glyphicon-qrcode:before { - content: "\e039"; -} -.glyphicon-barcode:before { - content: "\e040"; -} -.glyphicon-tag:before { - content: "\e041"; -} -.glyphicon-tags:before { - content: "\e042"; -} -.glyphicon-book:before { - content: "\e043"; -} -.glyphicon-bookmark:before { - content: "\e044"; -} -.glyphicon-print:before { - content: "\e045"; -} -.glyphicon-camera:before { - content: "\e046"; -} -.glyphicon-font:before { - content: "\e047"; -} -.glyphicon-bold:before { - content: "\e048"; -} -.glyphicon-italic:before { - content: "\e049"; -} -.glyphicon-text-height:before { - content: "\e050"; -} -.glyphicon-text-width:before { - content: "\e051"; -} -.glyphicon-align-left:before { - content: "\e052"; -} -.glyphicon-align-center:before { - content: "\e053"; -} -.glyphicon-align-right:before { - content: "\e054"; -} -.glyphicon-align-justify:before { - content: "\e055"; -} -.glyphicon-list:before { - content: "\e056"; -} -.glyphicon-indent-left:before { - content: "\e057"; -} -.glyphicon-indent-right:before { - content: "\e058"; -} -.glyphicon-facetime-video:before { - content: "\e059"; -} -.glyphicon-picture:before { - content: "\e060"; -} -.glyphicon-map-marker:before { - content: "\e062"; -} -.glyphicon-adjust:before { - content: "\e063"; -} -.glyphicon-tint:before { - content: "\e064"; -} -.glyphicon-edit:before { - content: "\e065"; -} -.glyphicon-share:before { - content: "\e066"; -} -.glyphicon-check:before { - content: "\e067"; -} -.glyphicon-move:before { - content: "\e068"; -} -.glyphicon-step-backward:before { - content: "\e069"; -} -.glyphicon-fast-backward:before { - content: "\e070"; -} -.glyphicon-backward:before { - content: "\e071"; -} -.glyphicon-play:before { - content: "\e072"; -} -.glyphicon-pause:before { - content: "\e073"; -} -.glyphicon-stop:before { - content: "\e074"; -} -.glyphicon-forward:before { - content: "\e075"; -} -.glyphicon-fast-forward:before { - content: "\e076"; -} -.glyphicon-step-forward:before { - content: "\e077"; -} -.glyphicon-eject:before { - content: "\e078"; -} -.glyphicon-chevron-left:before { - content: "\e079"; -} -.glyphicon-chevron-right:before { - content: "\e080"; -} -.glyphicon-plus-sign:before { - content: "\e081"; -} -.glyphicon-minus-sign:before { - content: "\e082"; -} -.glyphicon-remove-sign:before { - content: "\e083"; -} -.glyphicon-ok-sign:before { - content: "\e084"; -} -.glyphicon-question-sign:before { - content: "\e085"; -} -.glyphicon-info-sign:before { - content: "\e086"; -} -.glyphicon-screenshot:before { - content: "\e087"; -} -.glyphicon-remove-circle:before { - content: "\e088"; -} -.glyphicon-ok-circle:before { - content: "\e089"; -} -.glyphicon-ban-circle:before { - content: "\e090"; -} -.glyphicon-arrow-left:before { - content: "\e091"; -} -.glyphicon-arrow-right:before { - content: "\e092"; -} -.glyphicon-arrow-up:before { - content: "\e093"; -} -.glyphicon-arrow-down:before { - content: "\e094"; -} -.glyphicon-share-alt:before { - content: "\e095"; -} -.glyphicon-resize-full:before { - content: "\e096"; -} -.glyphicon-resize-small:before { - content: "\e097"; -} -.glyphicon-exclamation-sign:before { - content: "\e101"; -} -.glyphicon-gift:before { - content: "\e102"; -} -.glyphicon-leaf:before { - content: "\e103"; -} -.glyphicon-fire:before { - content: "\e104"; -} -.glyphicon-eye-open:before { - content: "\e105"; -} -.glyphicon-eye-close:before { - content: "\e106"; -} -.glyphicon-warning-sign:before { - content: "\e107"; -} -.glyphicon-plane:before { - content: "\e108"; -} -.glyphicon-calendar:before { - content: "\e109"; -} -.glyphicon-random:before { - content: "\e110"; -} -.glyphicon-comment:before { - content: "\e111"; -} -.glyphicon-magnet:before { - content: "\e112"; -} -.glyphicon-chevron-up:before { - content: "\e113"; -} -.glyphicon-chevron-down:before { - content: "\e114"; -} -.glyphicon-retweet:before { - content: "\e115"; -} -.glyphicon-shopping-cart:before { - content: "\e116"; -} -.glyphicon-folder-close:before { - content: "\e117"; -} -.glyphicon-folder-open:before { - content: "\e118"; -} -.glyphicon-resize-vertical:before { - content: "\e119"; -} -.glyphicon-resize-horizontal:before { - content: "\e120"; -} -.glyphicon-hdd:before { - content: "\e121"; -} -.glyphicon-bullhorn:before { - content: "\e122"; -} -.glyphicon-bell:before { - content: "\e123"; -} -.glyphicon-certificate:before { - content: "\e124"; -} -.glyphicon-thumbs-up:before { - content: "\e125"; -} -.glyphicon-thumbs-down:before { - content: "\e126"; -} -.glyphicon-hand-right:before { - content: "\e127"; -} -.glyphicon-hand-left:before { - content: "\e128"; -} -.glyphicon-hand-up:before { - content: 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8.33333333%; -} -.col-xs-push-0 { - left: auto; -} -.col-xs-offset-12 { - margin-left: 100%; -} -.col-xs-offset-11 { - margin-left: 91.66666667%; -} -.col-xs-offset-10 { - margin-left: 83.33333333%; -} -.col-xs-offset-9 { - margin-left: 75%; -} -.col-xs-offset-8 { - margin-left: 66.66666667%; -} -.col-xs-offset-7 { - margin-left: 58.33333333%; -} -.col-xs-offset-6 { - margin-left: 50%; -} -.col-xs-offset-5 { - margin-left: 41.66666667%; -} -.col-xs-offset-4 { - margin-left: 33.33333333%; -} -.col-xs-offset-3 { - margin-left: 25%; -} -.col-xs-offset-2 { - margin-left: 16.66666667%; -} -.col-xs-offset-1 { - margin-left: 8.33333333%; -} -.col-xs-offset-0 { - margin-left: 0; -} -@media (min-width: 768px) { - .col-sm-1, .col-sm-2, .col-sm-3, .col-sm-4, .col-sm-5, .col-sm-6, .col-sm-7, .col-sm-8, .col-sm-9, .col-sm-10, .col-sm-11, .col-sm-12 { - float: left; - } - .col-sm-12 { - width: 100%; - } - .col-sm-11 { - width: 91.66666667%; - } - .col-sm-10 { - width: 83.33333333%; - } - .col-sm-9 { - width: 75%; - } - .col-sm-8 { - width: 66.66666667%; - } - .col-sm-7 { - width: 58.33333333%; - } - .col-sm-6 { - width: 50%; - } - .col-sm-5 { - width: 41.66666667%; - } - .col-sm-4 { - width: 33.33333333%; - } - .col-sm-3 { - width: 25%; - } - .col-sm-2 { - width: 16.66666667%; - } - .col-sm-1 { - width: 8.33333333%; - } - .col-sm-pull-12 { - right: 100%; - } - .col-sm-pull-11 { - right: 91.66666667%; - } - .col-sm-pull-10 { - right: 83.33333333%; - } - .col-sm-pull-9 { - right: 75%; - } - .col-sm-pull-8 { - right: 66.66666667%; - } - .col-sm-pull-7 { - right: 58.33333333%; - } - .col-sm-pull-6 { - right: 50%; - } - .col-sm-pull-5 { - right: 41.66666667%; - } - .col-sm-pull-4 { - right: 33.33333333%; - } - .col-sm-pull-3 { - right: 25%; - } - .col-sm-pull-2 { - right: 16.66666667%; - } - .col-sm-pull-1 { - right: 8.33333333%; - } - .col-sm-pull-0 { - right: auto; - } - .col-sm-push-12 { - left: 100%; - } - .col-sm-push-11 { - left: 91.66666667%; - } - .col-sm-push-10 { - left: 83.33333333%; - } - .col-sm-push-9 { - left: 75%; - } - .col-sm-push-8 { - left: 66.66666667%; - } - .col-sm-push-7 { - left: 58.33333333%; - } - .col-sm-push-6 { - left: 50%; - } - .col-sm-push-5 { - left: 41.66666667%; - } - .col-sm-push-4 { - left: 33.33333333%; - } - .col-sm-push-3 { - left: 25%; - } - .col-sm-push-2 { - left: 16.66666667%; - } - .col-sm-push-1 { - left: 8.33333333%; - } - .col-sm-push-0 { - left: auto; - } - .col-sm-offset-12 { - margin-left: 100%; - } - .col-sm-offset-11 { - margin-left: 91.66666667%; - } - .col-sm-offset-10 { - margin-left: 83.33333333%; - } - .col-sm-offset-9 { - margin-left: 75%; - } - .col-sm-offset-8 { - margin-left: 66.66666667%; - } - .col-sm-offset-7 { - margin-left: 58.33333333%; - } - .col-sm-offset-6 { - margin-left: 50%; - } - .col-sm-offset-5 { - margin-left: 41.66666667%; - } - .col-sm-offset-4 { - margin-left: 33.33333333%; - } - .col-sm-offset-3 { - margin-left: 25%; - } - .col-sm-offset-2 { - margin-left: 16.66666667%; - } - .col-sm-offset-1 { - margin-left: 8.33333333%; - } - .col-sm-offset-0 { - margin-left: 0; - } -} -@media (min-width: 992px) { - .col-md-1, .col-md-2, .col-md-3, .col-md-4, .col-md-5, .col-md-6, .col-md-7, .col-md-8, .col-md-9, .col-md-10, .col-md-11, .col-md-12 { - float: left; - } - .col-md-12 { - width: 100%; - } - .col-md-11 { - width: 91.66666667%; - } - .col-md-10 { - width: 83.33333333%; - } - .col-md-9 { - width: 75%; - } - .col-md-8 { - width: 66.66666667%; - } - .col-md-7 { - width: 58.33333333%; - } - .col-md-6 { - width: 50%; - } - .col-md-5 { - width: 41.66666667%; - } - .col-md-4 { - width: 33.33333333%; - } - .col-md-3 { - width: 25%; - } - .col-md-2 { - width: 16.66666667%; - } - .col-md-1 { - width: 8.33333333%; - } - .col-md-pull-12 { - right: 100%; - } - .col-md-pull-11 { - right: 91.66666667%; - } - .col-md-pull-10 { - right: 83.33333333%; - } - .col-md-pull-9 { - right: 75%; - } - .col-md-pull-8 { - right: 66.66666667%; - } - .col-md-pull-7 { - right: 58.33333333%; - } - .col-md-pull-6 { - right: 50%; - } - .col-md-pull-5 { - right: 41.66666667%; - } - .col-md-pull-4 { - right: 33.33333333%; - } - .col-md-pull-3 { - right: 25%; - } - .col-md-pull-2 { - right: 16.66666667%; - } - .col-md-pull-1 { - right: 8.33333333%; - } - .col-md-pull-0 { - right: auto; - } - .col-md-push-12 { - left: 100%; - } - .col-md-push-11 { - left: 91.66666667%; - } - .col-md-push-10 { - left: 83.33333333%; - } - .col-md-push-9 { - left: 75%; - } - .col-md-push-8 { - left: 66.66666667%; - } - .col-md-push-7 { - left: 58.33333333%; - } - .col-md-push-6 { - left: 50%; - } - .col-md-push-5 { - left: 41.66666667%; - } - .col-md-push-4 { - left: 33.33333333%; - } - .col-md-push-3 { - left: 25%; - } - .col-md-push-2 { - left: 16.66666667%; - } - .col-md-push-1 { - left: 8.33333333%; - } - .col-md-push-0 { - left: auto; - } - .col-md-offset-12 { - margin-left: 100%; - } - .col-md-offset-11 { - margin-left: 91.66666667%; - } - .col-md-offset-10 { - margin-left: 83.33333333%; - } - .col-md-offset-9 { - margin-left: 75%; - } - .col-md-offset-8 { - margin-left: 66.66666667%; - } - .col-md-offset-7 { - margin-left: 58.33333333%; - } - .col-md-offset-6 { - margin-left: 50%; - } - .col-md-offset-5 { - margin-left: 41.66666667%; - } - .col-md-offset-4 { - margin-left: 33.33333333%; - } - .col-md-offset-3 { - margin-left: 25%; - } - .col-md-offset-2 { - margin-left: 16.66666667%; - } - .col-md-offset-1 { - margin-left: 8.33333333%; - } - .col-md-offset-0 { - margin-left: 0; - } -} -@media (min-width: 1200px) { - .col-lg-1, .col-lg-2, .col-lg-3, .col-lg-4, .col-lg-5, .col-lg-6, .col-lg-7, .col-lg-8, .col-lg-9, .col-lg-10, .col-lg-11, .col-lg-12 { - float: left; - } - .col-lg-12 { - width: 100%; - } - .col-lg-11 { - width: 91.66666667%; - } - .col-lg-10 { - width: 83.33333333%; - } - .col-lg-9 { - width: 75%; - } - .col-lg-8 { - width: 66.66666667%; - } - .col-lg-7 { - width: 58.33333333%; - } - .col-lg-6 { - width: 50%; - } - .col-lg-5 { - width: 41.66666667%; - } - .col-lg-4 { - width: 33.33333333%; - } - .col-lg-3 { - width: 25%; - } - .col-lg-2 { - width: 16.66666667%; - } - .col-lg-1 { - width: 8.33333333%; - } - .col-lg-pull-12 { - right: 100%; - } - .col-lg-pull-11 { - right: 91.66666667%; - } - .col-lg-pull-10 { - right: 83.33333333%; - } - .col-lg-pull-9 { - right: 75%; - } - .col-lg-pull-8 { - right: 66.66666667%; - } - .col-lg-pull-7 { - right: 58.33333333%; - } - .col-lg-pull-6 { - right: 50%; - } - .col-lg-pull-5 { - right: 41.66666667%; - } - .col-lg-pull-4 { - right: 33.33333333%; - } - .col-lg-pull-3 { - right: 25%; - } - .col-lg-pull-2 { - right: 16.66666667%; - } - .col-lg-pull-1 { - right: 8.33333333%; - } - .col-lg-pull-0 { - right: auto; - } - .col-lg-push-12 { - left: 100%; - } - .col-lg-push-11 { - left: 91.66666667%; - } - .col-lg-push-10 { - left: 83.33333333%; - } - .col-lg-push-9 { - left: 75%; - } - .col-lg-push-8 { - left: 66.66666667%; - } - .col-lg-push-7 { - left: 58.33333333%; - } - .col-lg-push-6 { - left: 50%; - } - .col-lg-push-5 { - left: 41.66666667%; - } - .col-lg-push-4 { - left: 33.33333333%; - } - .col-lg-push-3 { - left: 25%; - } - .col-lg-push-2 { - left: 16.66666667%; - } - .col-lg-push-1 { - left: 8.33333333%; - } - .col-lg-push-0 { - left: auto; - } - .col-lg-offset-12 { - margin-left: 100%; - } - .col-lg-offset-11 { - margin-left: 91.66666667%; - } - .col-lg-offset-10 { - margin-left: 83.33333333%; - } - .col-lg-offset-9 { - margin-left: 75%; - } - .col-lg-offset-8 { - margin-left: 66.66666667%; - } - .col-lg-offset-7 { - margin-left: 58.33333333%; - } - .col-lg-offset-6 { - margin-left: 50%; - } - .col-lg-offset-5 { - margin-left: 41.66666667%; - } - .col-lg-offset-4 { - margin-left: 33.33333333%; - } - .col-lg-offset-3 { - margin-left: 25%; - } - .col-lg-offset-2 { - margin-left: 16.66666667%; - } - .col-lg-offset-1 { - margin-left: 8.33333333%; - } - .col-lg-offset-0 { - margin-left: 0; - } -} -table { - background-color: transparent; -} -caption { - padding-top: 8px; - padding-bottom: 8px; - color: #777; - text-align: left; -} -th { - text-align: left; -} -.table { - width: 100%; - max-width: 100%; - margin-bottom: 20px; -} -.table > thead > tr > th, -.table > tbody > tr > th, -.table > tfoot > tr > th, -.table > thead > tr > td, -.table > tbody > tr > td, -.table > tfoot > tr > td { - padding: 8px; - line-height: 1.42857143; - vertical-align: top; - border-top: 1px solid #ddd; -} -.table > thead > tr > th { - vertical-align: bottom; - border-bottom: 2px solid #ddd; -} -.table > caption + thead > tr:first-child > th, -.table > colgroup + thead > tr:first-child > th, -.table > thead:first-child > tr:first-child > th, -.table > caption + thead > tr:first-child > td, -.table > colgroup + thead > tr:first-child > td, -.table > thead:first-child > tr:first-child > td { - border-top: 0; -} -.table > tbody + tbody { - border-top: 2px solid #ddd; -} -.table .table { - background-color: #fff; -} -.table-condensed > thead > tr > th, -.table-condensed > tbody > tr > th, -.table-condensed > tfoot > tr > th, -.table-condensed > thead > tr > td, -.table-condensed > tbody > tr > td, -.table-condensed > tfoot > tr > td { - padding: 5px; -} -.table-bordered { - border: 1px solid #ddd; -} -.table-bordered > thead > tr > th, -.table-bordered > tbody > tr > th, -.table-bordered > tfoot > tr > th, -.table-bordered > thead > tr > td, -.table-bordered > tbody > tr > td, -.table-bordered > tfoot > tr > td { - border: 1px solid #ddd; -} -.table-bordered > thead > tr > th, -.table-bordered > thead > tr > td { - border-bottom-width: 2px; -} -.table-striped > tbody > tr:nth-of-type(odd) { - background-color: #f9f9f9; -} -.table-hover > tbody > tr:hover { - background-color: #f5f5f5; -} -table col[class*="col-"] { - position: static; - display: table-column; - float: none; -} -table td[class*="col-"], -table th[class*="col-"] { - position: static; - display: table-cell; - float: none; -} -.table > thead > tr > td.active, -.table > tbody > tr > td.active, -.table > tfoot > tr > td.active, -.table > thead > tr > th.active, -.table > tbody > tr > th.active, -.table > tfoot > tr > th.active, -.table > thead > tr.active > td, -.table > tbody > tr.active > td, -.table > tfoot > tr.active > td, -.table > thead > tr.active > th, -.table > tbody > tr.active > th, -.table > tfoot > tr.active > th { - background-color: #f5f5f5; -} -.table-hover > tbody > tr > td.active:hover, -.table-hover > tbody > tr > th.active:hover, -.table-hover > tbody > tr.active:hover > td, -.table-hover > tbody > tr:hover > .active, -.table-hover > tbody > tr.active:hover > th { - background-color: #e8e8e8; -} -.table > thead > tr > td.success, -.table > tbody > tr > td.success, -.table > tfoot > tr > td.success, -.table > thead > tr > th.success, -.table > tbody > tr > th.success, -.table > tfoot > tr > th.success, -.table > thead > tr.success > td, -.table > tbody > tr.success > td, -.table > tfoot > tr.success > td, -.table > thead > tr.success > th, -.table > tbody > tr.success > th, -.table > tfoot > tr.success > th { - background-color: #dff0d8; -} -.table-hover > tbody > tr > td.success:hover, -.table-hover > tbody > tr > th.success:hover, -.table-hover > tbody > tr.success:hover > td, -.table-hover > tbody > tr:hover > .success, -.table-hover > tbody > tr.success:hover > th { - background-color: #d0e9c6; -} -.table > thead > tr > td.info, -.table > tbody > tr > td.info, -.table > tfoot > tr > td.info, -.table > thead > tr > th.info, -.table > tbody > tr > th.info, -.table > tfoot > tr > th.info, -.table > thead > tr.info > td, -.table > tbody > tr.info > td, -.table > tfoot > tr.info > td, -.table > thead > tr.info > th, -.table > tbody > tr.info > th, -.table > tfoot > tr.info > th { - background-color: #d9edf7; -} -.table-hover > tbody > tr > td.info:hover, -.table-hover > tbody > tr > th.info:hover, -.table-hover > tbody > tr.info:hover > td, -.table-hover > tbody > tr:hover > .info, -.table-hover > tbody > tr.info:hover > th { - background-color: #c4e3f3; -} -.table > thead > tr > td.warning, -.table > tbody > tr > td.warning, -.table > tfoot > tr > td.warning, -.table > thead > tr > th.warning, -.table > tbody > tr > th.warning, -.table > tfoot > tr > th.warning, -.table > thead > tr.warning > td, -.table > tbody > tr.warning > td, -.table > tfoot > tr.warning > td, -.table > thead > tr.warning > th, -.table > tbody > tr.warning > th, -.table > tfoot > tr.warning > th { - background-color: #fcf8e3; -} -.table-hover > tbody > tr > td.warning:hover, -.table-hover > tbody > tr > th.warning:hover, -.table-hover > tbody > tr.warning:hover > td, -.table-hover > tbody > tr:hover > .warning, -.table-hover > tbody > tr.warning:hover > th { - background-color: #faf2cc; -} -.table > thead > tr > td.danger, -.table > tbody > tr > td.danger, -.table > tfoot > tr > td.danger, -.table > thead > tr > th.danger, -.table > tbody > tr > th.danger, -.table > tfoot > tr > th.danger, -.table > thead > tr.danger > td, -.table > tbody > tr.danger > td, -.table > tfoot > tr.danger > td, -.table > thead > tr.danger > th, -.table > tbody > tr.danger > th, -.table > tfoot > tr.danger > th { - background-color: #f2dede; -} -.table-hover > tbody > tr > td.danger:hover, -.table-hover > tbody > tr > th.danger:hover, -.table-hover > tbody > tr.danger:hover > td, -.table-hover > tbody > tr:hover > .danger, -.table-hover > tbody > tr.danger:hover > th { - background-color: #ebcccc; -} -.table-responsive { - min-height: .01%; - overflow-x: auto; -} -@media screen and (max-width: 767px) { - .table-responsive { - width: 100%; - margin-bottom: 15px; - overflow-y: hidden; - -ms-overflow-style: -ms-autohiding-scrollbar; - border: 1px solid #ddd; - } - .table-responsive > .table { - margin-bottom: 0; - } - .table-responsive > .table > thead > tr > th, - .table-responsive > .table > tbody > tr > th, - .table-responsive > .table > tfoot > tr > th, - .table-responsive > .table > thead > tr > td, - .table-responsive > .table > tbody > tr > td, - .table-responsive > .table > tfoot > tr > td { - white-space: nowrap; - } - .table-responsive > .table-bordered { - border: 0; - } - .table-responsive > .table-bordered > thead > tr > th:first-child, - .table-responsive > .table-bordered > tbody > tr > th:first-child, - .table-responsive > .table-bordered > tfoot > tr > th:first-child, - .table-responsive > .table-bordered > thead > tr > td:first-child, - .table-responsive > .table-bordered > tbody > tr > td:first-child, - .table-responsive > .table-bordered > tfoot > tr > td:first-child { - border-left: 0; - } - .table-responsive > .table-bordered > thead > tr > th:last-child, - .table-responsive > .table-bordered > tbody > tr > th:last-child, - .table-responsive > .table-bordered > tfoot > tr > th:last-child, - .table-responsive > .table-bordered > thead > tr > td:last-child, - .table-responsive > .table-bordered > tbody > tr > td:last-child, - .table-responsive > .table-bordered > tfoot > tr > td:last-child { - border-right: 0; - } - .table-responsive > .table-bordered > tbody > tr:last-child > th, - .table-responsive > .table-bordered > tfoot > tr:last-child > th, - .table-responsive > .table-bordered > tbody > tr:last-child > td, - .table-responsive > .table-bordered > tfoot > tr:last-child > td { - border-bottom: 0; - } -} -fieldset { - min-width: 0; - padding: 0; - margin: 0; - border: 0; -} -legend { - display: block; - width: 100%; - padding: 0; - margin-bottom: 20px; - font-size: 21px; - line-height: inherit; - color: #333; - border: 0; - border-bottom: 1px solid #e5e5e5; -} -label { - display: inline-block; - max-width: 100%; - margin-bottom: 5px; - font-weight: bold; -} -input[type="search"] { - -webkit-box-sizing: border-box; - -moz-box-sizing: border-box; - box-sizing: border-box; -} -input[type="radio"], -input[type="checkbox"] { - margin: 4px 0 0; - margin-top: 1px \9; - line-height: normal; -} -input[type="file"] { - display: block; -} -input[type="range"] { - display: block; - width: 100%; -} -select[multiple], -select[size] { - height: auto; -} -input[type="file"]:focus, -input[type="radio"]:focus, -input[type="checkbox"]:focus { - outline: 5px auto -webkit-focus-ring-color; - outline-offset: -2px; -} -output { - display: block; - padding-top: 7px; - font-size: 14px; - line-height: 1.42857143; - color: #555; -} -.form-control { - display: block; - width: 100%; - height: 34px; - padding: 6px 12px; - font-size: 14px; - line-height: 1.42857143; - color: #555; - background-color: #fff; - background-image: none; - border: 1px solid #ccc; - border-radius: 4px; - -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075); - box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075); - -webkit-transition: border-color ease-in-out .15s, -webkit-box-shadow ease-in-out .15s; - -o-transition: border-color ease-in-out .15s, box-shadow ease-in-out .15s; - transition: border-color ease-in-out .15s, box-shadow ease-in-out .15s; -} -.form-control:focus { - border-color: #66afe9; - outline: 0; - -webkit-box-shadow: inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, .6); - box-shadow: inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, .6); -} -.form-control::-moz-placeholder { - color: #999; - opacity: 1; -} -.form-control:-ms-input-placeholder { - color: #999; -} -.form-control::-webkit-input-placeholder { - color: #999; -} -.form-control::-ms-expand { - background-color: transparent; - border: 0; -} -.form-control[disabled], -.form-control[readonly], -fieldset[disabled] .form-control { - background-color: #eee; - opacity: 1; -} -.form-control[disabled], -fieldset[disabled] .form-control { - cursor: not-allowed; -} -textarea.form-control { - height: auto; -} -input[type="search"] { - -webkit-appearance: none; -} -@media screen and (-webkit-min-device-pixel-ratio: 0) { - input[type="date"].form-control, - input[type="time"].form-control, - input[type="datetime-local"].form-control, - input[type="month"].form-control { - line-height: 34px; - } - input[type="date"].input-sm, - input[type="time"].input-sm, - input[type="datetime-local"].input-sm, - input[type="month"].input-sm, - .input-group-sm input[type="date"], - .input-group-sm input[type="time"], - .input-group-sm input[type="datetime-local"], - .input-group-sm input[type="month"] { - line-height: 30px; - } - input[type="date"].input-lg, - input[type="time"].input-lg, - input[type="datetime-local"].input-lg, - input[type="month"].input-lg, - .input-group-lg input[type="date"], - .input-group-lg input[type="time"], - .input-group-lg input[type="datetime-local"], - .input-group-lg input[type="month"] { - line-height: 46px; - } -} -.form-group { - margin-bottom: 15px; -} -.radio, -.checkbox { - position: relative; - display: block; - margin-top: 10px; - margin-bottom: 10px; -} -.radio label, -.checkbox label { - min-height: 20px; - padding-left: 20px; - margin-bottom: 0; - font-weight: normal; - cursor: pointer; -} -.radio input[type="radio"], -.radio-inline input[type="radio"], -.checkbox input[type="checkbox"], -.checkbox-inline input[type="checkbox"] { - position: absolute; - margin-top: 4px \9; - margin-left: -20px; -} -.radio + .radio, -.checkbox + .checkbox { - margin-top: -5px; -} -.radio-inline, -.checkbox-inline { - position: relative; - display: inline-block; - padding-left: 20px; - margin-bottom: 0; - font-weight: normal; - vertical-align: middle; - cursor: pointer; -} -.radio-inline + .radio-inline, -.checkbox-inline + .checkbox-inline { - margin-top: 0; - margin-left: 10px; -} -input[type="radio"][disabled], -input[type="checkbox"][disabled], -input[type="radio"].disabled, -input[type="checkbox"].disabled, -fieldset[disabled] input[type="radio"], -fieldset[disabled] input[type="checkbox"] { - cursor: not-allowed; -} -.radio-inline.disabled, -.checkbox-inline.disabled, -fieldset[disabled] .radio-inline, -fieldset[disabled] .checkbox-inline { - cursor: not-allowed; -} -.radio.disabled label, -.checkbox.disabled label, -fieldset[disabled] .radio label, -fieldset[disabled] .checkbox label { - cursor: not-allowed; -} -.form-control-static { - min-height: 34px; - padding-top: 7px; - padding-bottom: 7px; - margin-bottom: 0; -} -.form-control-static.input-lg, -.form-control-static.input-sm { - padding-right: 0; - padding-left: 0; -} -.input-sm { - height: 30px; - padding: 5px 10px; - font-size: 12px; - line-height: 1.5; - border-radius: 3px; -} -select.input-sm { - height: 30px; - line-height: 30px; -} -textarea.input-sm, -select[multiple].input-sm { - height: auto; -} -.form-group-sm .form-control { - height: 30px; - padding: 5px 10px; - font-size: 12px; - line-height: 1.5; - border-radius: 3px; -} -.form-group-sm select.form-control { - height: 30px; - line-height: 30px; -} -.form-group-sm textarea.form-control, -.form-group-sm select[multiple].form-control { - height: auto; -} -.form-group-sm .form-control-static { - height: 30px; - min-height: 32px; - padding: 6px 10px; - font-size: 12px; - line-height: 1.5; -} -.input-lg { - height: 46px; - padding: 10px 16px; - font-size: 18px; - line-height: 1.3333333; - border-radius: 6px; -} -select.input-lg { - height: 46px; - line-height: 46px; -} -textarea.input-lg, -select[multiple].input-lg { - height: auto; -} -.form-group-lg .form-control { - height: 46px; - padding: 10px 16px; - font-size: 18px; - line-height: 1.3333333; - border-radius: 6px; -} -.form-group-lg select.form-control { - height: 46px; - line-height: 46px; -} -.form-group-lg textarea.form-control, -.form-group-lg select[multiple].form-control { - height: auto; -} -.form-group-lg .form-control-static { - height: 46px; - min-height: 38px; - padding: 11px 16px; - font-size: 18px; - line-height: 1.3333333; -} -.has-feedback { - position: relative; -} -.has-feedback .form-control { - padding-right: 42.5px; -} -.form-control-feedback { - position: absolute; - top: 0; - right: 0; - z-index: 2; - display: block; - width: 34px; - height: 34px; - line-height: 34px; - text-align: center; - pointer-events: none; -} -.input-lg + .form-control-feedback, -.input-group-lg + .form-control-feedback, -.form-group-lg .form-control + .form-control-feedback { - width: 46px; - height: 46px; - line-height: 46px; -} -.input-sm + .form-control-feedback, -.input-group-sm + .form-control-feedback, -.form-group-sm .form-control + .form-control-feedback { - width: 30px; - height: 30px; - line-height: 30px; -} -.has-success .help-block, -.has-success .control-label, -.has-success .radio, -.has-success .checkbox, -.has-success .radio-inline, -.has-success .checkbox-inline, -.has-success.radio label, -.has-success.checkbox label, -.has-success.radio-inline label, -.has-success.checkbox-inline label { - color: #3c763d; -} -.has-success .form-control { - border-color: #3c763d; - -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075); - box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075); -} -.has-success .form-control:focus { - border-color: #2b542c; - -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 6px #67b168; - box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 6px #67b168; -} -.has-success .input-group-addon { - color: #3c763d; - background-color: #dff0d8; - border-color: #3c763d; -} -.has-success .form-control-feedback { - color: #3c763d; -} -.has-warning .help-block, -.has-warning .control-label, -.has-warning .radio, -.has-warning .checkbox, -.has-warning .radio-inline, -.has-warning .checkbox-inline, -.has-warning.radio label, -.has-warning.checkbox label, -.has-warning.radio-inline label, -.has-warning.checkbox-inline label { - color: #8a6d3b; -} -.has-warning .form-control { - border-color: #8a6d3b; - -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075); - box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075); -} -.has-warning .form-control:focus { - border-color: #66512c; - -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 6px #c0a16b; - box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 6px #c0a16b; -} -.has-warning .input-group-addon { - color: #8a6d3b; - background-color: #fcf8e3; - border-color: #8a6d3b; -} -.has-warning .form-control-feedback { - color: #8a6d3b; -} -.has-error .help-block, -.has-error .control-label, -.has-error .radio, -.has-error .checkbox, -.has-error .radio-inline, -.has-error .checkbox-inline, -.has-error.radio label, -.has-error.checkbox label, -.has-error.radio-inline label, -.has-error.checkbox-inline label { - color: #a94442; -} -.has-error .form-control { - border-color: #a94442; - -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075); - box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075); -} -.has-error .form-control:focus { - border-color: #843534; - -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 6px #ce8483; - box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 6px #ce8483; -} -.has-error .input-group-addon { - color: #a94442; - background-color: #f2dede; - border-color: #a94442; -} -.has-error .form-control-feedback { - color: #a94442; -} -.has-feedback label ~ .form-control-feedback { - top: 25px; -} -.has-feedback label.sr-only ~ .form-control-feedback { - top: 0; -} -.help-block { - display: block; - margin-top: 5px; - margin-bottom: 10px; - color: #737373; -} -@media (min-width: 768px) { - .form-inline .form-group { - display: inline-block; - margin-bottom: 0; - vertical-align: middle; - } - .form-inline .form-control { - display: inline-block; - width: auto; - vertical-align: middle; - } - .form-inline .form-control-static { - display: inline-block; - } - .form-inline .input-group { - display: inline-table; - vertical-align: middle; - } - .form-inline .input-group .input-group-addon, - .form-inline .input-group .input-group-btn, - .form-inline .input-group .form-control { - width: auto; - } - .form-inline .input-group > .form-control { - width: 100%; - } - .form-inline .control-label { - margin-bottom: 0; - vertical-align: middle; - } - .form-inline .radio, - .form-inline .checkbox { - display: inline-block; - margin-top: 0; - margin-bottom: 0; - vertical-align: middle; - } - .form-inline .radio label, - .form-inline .checkbox label { - padding-left: 0; - } - .form-inline .radio input[type="radio"], - .form-inline .checkbox input[type="checkbox"] { - position: relative; - margin-left: 0; - } - .form-inline .has-feedback .form-control-feedback { - top: 0; - } -} -.form-horizontal .radio, -.form-horizontal .checkbox, -.form-horizontal .radio-inline, -.form-horizontal .checkbox-inline { - padding-top: 7px; - margin-top: 0; - margin-bottom: 0; -} -.form-horizontal .radio, -.form-horizontal .checkbox { - min-height: 27px; -} -.form-horizontal .form-group { - margin-right: -15px; - margin-left: -15px; -} -@media (min-width: 768px) { - .form-horizontal .control-label { - padding-top: 7px; - margin-bottom: 0; - text-align: right; - } -} -.form-horizontal .has-feedback .form-control-feedback { - right: 15px; -} -@media (min-width: 768px) { - .form-horizontal .form-group-lg .control-label { - padding-top: 11px; - font-size: 18px; - } -} -@media (min-width: 768px) { - .form-horizontal .form-group-sm .control-label { - padding-top: 6px; - font-size: 12px; - } -} -.btn { - display: inline-block; - padding: 6px 12px; - margin-bottom: 0; - font-size: 14px; - font-weight: normal; - line-height: 1.42857143; - text-align: center; - white-space: nowrap; - vertical-align: middle; - -ms-touch-action: manipulation; - touch-action: manipulation; - cursor: pointer; - -webkit-user-select: none; - -moz-user-select: none; - -ms-user-select: none; - user-select: none; - background-image: none; - border: 1px solid transparent; - border-radius: 4px; -} -.btn:focus, -.btn:active:focus, -.btn.active:focus, -.btn.focus, -.btn:active.focus, -.btn.active.focus { - outline: 5px auto -webkit-focus-ring-color; - outline-offset: -2px; -} -.btn:hover, -.btn:focus, -.btn.focus { - color: #333; - text-decoration: none; -} -.btn:active, -.btn.active { - background-image: none; - outline: 0; - -webkit-box-shadow: inset 0 3px 5px rgba(0, 0, 0, .125); - box-shadow: inset 0 3px 5px rgba(0, 0, 0, .125); -} -.btn.disabled, -.btn[disabled], -fieldset[disabled] .btn { - cursor: not-allowed; - filter: alpha(opacity=65); - -webkit-box-shadow: none; - box-shadow: none; - opacity: .65; -} -a.btn.disabled, -fieldset[disabled] a.btn { - pointer-events: none; -} -.btn-default { - color: #333; - background-color: #fff; - border-color: #ccc; -} -.btn-default:focus, -.btn-default.focus { - color: #333; - background-color: #e6e6e6; - border-color: #8c8c8c; -} -.btn-default:hover { - color: #333; - background-color: #e6e6e6; - border-color: #adadad; -} -.btn-default:active, -.btn-default.active, -.open > .dropdown-toggle.btn-default { - color: #333; - background-color: #e6e6e6; - border-color: #adadad; -} -.btn-default:active:hover, -.btn-default.active:hover, -.open > .dropdown-toggle.btn-default:hover, -.btn-default:active:focus, -.btn-default.active:focus, -.open > .dropdown-toggle.btn-default:focus, -.btn-default:active.focus, -.btn-default.active.focus, -.open > .dropdown-toggle.btn-default.focus { - color: #333; - background-color: #d4d4d4; - border-color: #8c8c8c; -} -.btn-default:active, -.btn-default.active, -.open > .dropdown-toggle.btn-default { - background-image: none; -} -.btn-default.disabled:hover, -.btn-default[disabled]:hover, -fieldset[disabled] .btn-default:hover, -.btn-default.disabled:focus, -.btn-default[disabled]:focus, -fieldset[disabled] .btn-default:focus, -.btn-default.disabled.focus, -.btn-default[disabled].focus, -fieldset[disabled] .btn-default.focus { - background-color: #fff; - border-color: #ccc; -} -.btn-default .badge { - color: #fff; - background-color: #333; -} -.btn-primary { - color: #fff; - background-color: #337ab7; - border-color: #2e6da4; -} -.btn-primary:focus, -.btn-primary.focus { - color: #fff; - background-color: #286090; - border-color: #122b40; -} -.btn-primary:hover { - color: #fff; - background-color: #286090; - border-color: #204d74; -} -.btn-primary:active, -.btn-primary.active, -.open > .dropdown-toggle.btn-primary { - color: #fff; - background-color: #286090; - border-color: #204d74; -} -.btn-primary:active:hover, -.btn-primary.active:hover, -.open > .dropdown-toggle.btn-primary:hover, -.btn-primary:active:focus, -.btn-primary.active:focus, -.open > .dropdown-toggle.btn-primary:focus, -.btn-primary:active.focus, -.btn-primary.active.focus, -.open > .dropdown-toggle.btn-primary.focus { - color: #fff; - background-color: #204d74; - border-color: #122b40; -} -.btn-primary:active, -.btn-primary.active, -.open > .dropdown-toggle.btn-primary { - background-image: none; -} -.btn-primary.disabled:hover, -.btn-primary[disabled]:hover, -fieldset[disabled] .btn-primary:hover, -.btn-primary.disabled:focus, -.btn-primary[disabled]:focus, -fieldset[disabled] .btn-primary:focus, -.btn-primary.disabled.focus, -.btn-primary[disabled].focus, -fieldset[disabled] .btn-primary.focus { - background-color: #337ab7; - border-color: #2e6da4; -} -.btn-primary .badge { - color: #337ab7; - background-color: #fff; -} -.btn-success { - color: #fff; - background-color: #5cb85c; - border-color: #4cae4c; -} -.btn-success:focus, -.btn-success.focus { - color: #fff; - background-color: #449d44; - border-color: #255625; -} -.btn-success:hover { - color: #fff; - background-color: #449d44; - border-color: #398439; -} -.btn-success:active, -.btn-success.active, -.open > .dropdown-toggle.btn-success { - color: #fff; - background-color: #449d44; - border-color: #398439; -} -.btn-success:active:hover, -.btn-success.active:hover, -.open > .dropdown-toggle.btn-success:hover, -.btn-success:active:focus, -.btn-success.active:focus, -.open > .dropdown-toggle.btn-success:focus, -.btn-success:active.focus, -.btn-success.active.focus, -.open > .dropdown-toggle.btn-success.focus { - color: #fff; - background-color: #398439; - border-color: #255625; -} -.btn-success:active, -.btn-success.active, -.open > .dropdown-toggle.btn-success { - background-image: none; -} -.btn-success.disabled:hover, -.btn-success[disabled]:hover, -fieldset[disabled] .btn-success:hover, -.btn-success.disabled:focus, -.btn-success[disabled]:focus, -fieldset[disabled] .btn-success:focus, -.btn-success.disabled.focus, -.btn-success[disabled].focus, -fieldset[disabled] .btn-success.focus { - background-color: #5cb85c; - border-color: #4cae4c; -} -.btn-success .badge { - color: #5cb85c; - background-color: #fff; -} -.btn-info { - color: #fff; - background-color: #5bc0de; - border-color: #46b8da; -} -.btn-info:focus, -.btn-info.focus { - color: #fff; - background-color: #31b0d5; - border-color: #1b6d85; -} -.btn-info:hover { - color: #fff; - background-color: #31b0d5; - border-color: #269abc; -} -.btn-info:active, -.btn-info.active, -.open > .dropdown-toggle.btn-info { - color: #fff; - background-color: #31b0d5; - border-color: #269abc; -} -.btn-info:active:hover, -.btn-info.active:hover, -.open > .dropdown-toggle.btn-info:hover, -.btn-info:active:focus, -.btn-info.active:focus, -.open > .dropdown-toggle.btn-info:focus, -.btn-info:active.focus, -.btn-info.active.focus, -.open > .dropdown-toggle.btn-info.focus { - color: #fff; - background-color: #269abc; - border-color: #1b6d85; -} -.btn-info:active, -.btn-info.active, -.open > .dropdown-toggle.btn-info { - background-image: none; -} -.btn-info.disabled:hover, -.btn-info[disabled]:hover, -fieldset[disabled] .btn-info:hover, -.btn-info.disabled:focus, -.btn-info[disabled]:focus, -fieldset[disabled] .btn-info:focus, -.btn-info.disabled.focus, -.btn-info[disabled].focus, -fieldset[disabled] .btn-info.focus { - background-color: #5bc0de; - border-color: #46b8da; -} -.btn-info .badge { - color: #5bc0de; - background-color: #fff; -} -.btn-warning { - color: #fff; - background-color: #f0ad4e; - border-color: #eea236; -} -.btn-warning:focus, -.btn-warning.focus { - color: #fff; - background-color: #ec971f; - border-color: #985f0d; -} -.btn-warning:hover { - color: #fff; - background-color: #ec971f; - border-color: #d58512; -} -.btn-warning:active, -.btn-warning.active, -.open > .dropdown-toggle.btn-warning { - color: #fff; - background-color: #ec971f; - border-color: #d58512; -} -.btn-warning:active:hover, -.btn-warning.active:hover, -.open > .dropdown-toggle.btn-warning:hover, -.btn-warning:active:focus, -.btn-warning.active:focus, -.open > .dropdown-toggle.btn-warning:focus, -.btn-warning:active.focus, -.btn-warning.active.focus, -.open > .dropdown-toggle.btn-warning.focus { - color: #fff; - background-color: #d58512; - border-color: #985f0d; -} -.btn-warning:active, -.btn-warning.active, -.open > .dropdown-toggle.btn-warning { - background-image: none; -} -.btn-warning.disabled:hover, -.btn-warning[disabled]:hover, -fieldset[disabled] .btn-warning:hover, -.btn-warning.disabled:focus, -.btn-warning[disabled]:focus, -fieldset[disabled] .btn-warning:focus, -.btn-warning.disabled.focus, -.btn-warning[disabled].focus, -fieldset[disabled] .btn-warning.focus { - background-color: #f0ad4e; - border-color: #eea236; -} -.btn-warning .badge { - color: #f0ad4e; - background-color: #fff; -} -.btn-danger { - color: #fff; - background-color: #d9534f; - border-color: #d43f3a; -} -.btn-danger:focus, -.btn-danger.focus { - color: #fff; - background-color: #c9302c; - border-color: #761c19; -} -.btn-danger:hover { - color: #fff; - background-color: #c9302c; - border-color: #ac2925; -} -.btn-danger:active, -.btn-danger.active, -.open > .dropdown-toggle.btn-danger { - color: #fff; - background-color: #c9302c; - border-color: #ac2925; -} -.btn-danger:active:hover, -.btn-danger.active:hover, -.open > .dropdown-toggle.btn-danger:hover, -.btn-danger:active:focus, -.btn-danger.active:focus, -.open > .dropdown-toggle.btn-danger:focus, -.btn-danger:active.focus, -.btn-danger.active.focus, -.open > .dropdown-toggle.btn-danger.focus { - color: #fff; - background-color: #ac2925; - border-color: #761c19; -} -.btn-danger:active, -.btn-danger.active, -.open > .dropdown-toggle.btn-danger { - background-image: none; -} -.btn-danger.disabled:hover, -.btn-danger[disabled]:hover, -fieldset[disabled] .btn-danger:hover, -.btn-danger.disabled:focus, -.btn-danger[disabled]:focus, -fieldset[disabled] .btn-danger:focus, -.btn-danger.disabled.focus, -.btn-danger[disabled].focus, -fieldset[disabled] .btn-danger.focus { - background-color: #d9534f; - border-color: #d43f3a; -} -.btn-danger .badge { - color: #d9534f; - background-color: #fff; -} -.btn-link { - font-weight: normal; - color: #337ab7; - border-radius: 0; -} -.btn-link, -.btn-link:active, -.btn-link.active, -.btn-link[disabled], -fieldset[disabled] .btn-link { - background-color: transparent; - -webkit-box-shadow: none; - box-shadow: none; -} -.btn-link, -.btn-link:hover, -.btn-link:focus, -.btn-link:active { - border-color: transparent; -} -.btn-link:hover, -.btn-link:focus { - color: #23527c; - text-decoration: underline; - background-color: transparent; -} -.btn-link[disabled]:hover, -fieldset[disabled] .btn-link:hover, -.btn-link[disabled]:focus, -fieldset[disabled] .btn-link:focus { - color: #777; - text-decoration: none; -} -.btn-lg, -.btn-group-lg > .btn { - padding: 10px 16px; - font-size: 18px; - line-height: 1.3333333; - border-radius: 6px; -} -.btn-sm, -.btn-group-sm > .btn { - padding: 5px 10px; - font-size: 12px; - line-height: 1.5; - border-radius: 3px; -} -.btn-xs, -.btn-group-xs > .btn { - padding: 1px 5px; - font-size: 12px; - line-height: 1.5; - border-radius: 3px; -} -.btn-block { - display: block; - width: 100%; -} -.btn-block + .btn-block { - margin-top: 5px; -} -input[type="submit"].btn-block, -input[type="reset"].btn-block, -input[type="button"].btn-block { - width: 100%; -} -.fade { - opacity: 0; - -webkit-transition: opacity .15s linear; - -o-transition: opacity .15s linear; - transition: opacity .15s linear; -} -.fade.in { - opacity: 1; -} -.collapse { - display: none; -} -.collapse.in { - display: block; -} -tr.collapse.in { - display: table-row; -} -tbody.collapse.in { - display: table-row-group; -} -.collapsing { - position: relative; - height: 0; - overflow: hidden; - -webkit-transition-timing-function: ease; - -o-transition-timing-function: ease; - transition-timing-function: ease; - -webkit-transition-duration: .35s; - -o-transition-duration: .35s; - transition-duration: .35s; - -webkit-transition-property: height, visibility; - -o-transition-property: height, visibility; - transition-property: height, visibility; -} -.caret { - display: inline-block; - width: 0; - height: 0; - margin-left: 2px; - vertical-align: middle; - border-top: 4px dashed; - border-top: 4px solid \9; - border-right: 4px solid transparent; - border-left: 4px solid transparent; -} -.dropup, -.dropdown { - position: relative; -} -.dropdown-toggle:focus { - outline: 0; -} -.dropdown-menu { - position: absolute; - top: 100%; - left: 0; - z-index: 1000; - display: none; - float: left; - min-width: 160px; - padding: 5px 0; - margin: 2px 0 0; - font-size: 14px; - text-align: left; - list-style: none; - background-color: #fff; - -webkit-background-clip: padding-box; - background-clip: padding-box; - border: 1px solid #ccc; - border: 1px solid rgba(0, 0, 0, .15); - border-radius: 4px; - -webkit-box-shadow: 0 6px 12px rgba(0, 0, 0, .175); - box-shadow: 0 6px 12px rgba(0, 0, 0, .175); -} -.dropdown-menu.pull-right { - right: 0; - left: auto; -} -.dropdown-menu .divider { - height: 1px; - margin: 9px 0; - overflow: hidden; - background-color: #e5e5e5; -} -.dropdown-menu > li > a { - display: block; - padding: 3px 20px; - clear: both; - font-weight: normal; - line-height: 1.42857143; - color: #333; - white-space: nowrap; -} -.dropdown-menu > li > a:hover, -.dropdown-menu > li > a:focus { - color: #262626; - text-decoration: none; - background-color: #f5f5f5; -} -.dropdown-menu > .active > a, -.dropdown-menu > .active > a:hover, -.dropdown-menu > .active > a:focus { - color: #fff; - text-decoration: none; - background-color: #337ab7; - outline: 0; -} -.dropdown-menu > .disabled > a, -.dropdown-menu > .disabled > a:hover, -.dropdown-menu > .disabled > a:focus { - color: #777; -} -.dropdown-menu > .disabled > a:hover, -.dropdown-menu > .disabled > a:focus { - text-decoration: none; - cursor: not-allowed; - background-color: transparent; - background-image: none; - filter: progid:DXImageTransform.Microsoft.gradient(enabled = false); -} -.open > .dropdown-menu { - display: block; -} -.open > a { - outline: 0; -} -.dropdown-menu-right { - right: 0; - left: auto; -} -.dropdown-menu-left { - right: auto; - left: 0; -} -.dropdown-header { - display: block; - padding: 3px 20px; - font-size: 12px; - line-height: 1.42857143; - color: #777; - white-space: nowrap; -} -.dropdown-backdrop { - position: fixed; - top: 0; - right: 0; - bottom: 0; - left: 0; - z-index: 990; -} -.pull-right > .dropdown-menu { - right: 0; - left: auto; -} -.dropup .caret, -.navbar-fixed-bottom .dropdown .caret { - content: ""; - border-top: 0; - border-bottom: 4px dashed; - border-bottom: 4px solid \9; -} -.dropup .dropdown-menu, -.navbar-fixed-bottom .dropdown .dropdown-menu { - top: auto; - bottom: 100%; - margin-bottom: 2px; -} -@media (min-width: 768px) { - .navbar-right .dropdown-menu { - right: 0; - left: auto; - } - .navbar-right .dropdown-menu-left { - right: auto; - left: 0; - } -} -.btn-group, -.btn-group-vertical { - position: relative; - display: inline-block; - vertical-align: middle; -} -.btn-group > .btn, -.btn-group-vertical > .btn { - position: relative; - float: left; -} -.btn-group > .btn:hover, -.btn-group-vertical > .btn:hover, -.btn-group > .btn:focus, -.btn-group-vertical > .btn:focus, -.btn-group > .btn:active, -.btn-group-vertical > .btn:active, -.btn-group > .btn.active, -.btn-group-vertical > .btn.active { - z-index: 2; -} -.btn-group .btn + .btn, -.btn-group .btn + .btn-group, -.btn-group .btn-group + .btn, -.btn-group .btn-group + .btn-group { - margin-left: -1px; -} -.btn-toolbar { - margin-left: -5px; -} -.btn-toolbar .btn, -.btn-toolbar .btn-group, -.btn-toolbar .input-group { - float: left; -} -.btn-toolbar > .btn, -.btn-toolbar > .btn-group, -.btn-toolbar > .input-group { - margin-left: 5px; -} -.btn-group > .btn:not(:first-child):not(:last-child):not(.dropdown-toggle) { - border-radius: 0; -} -.btn-group > .btn:first-child { - margin-left: 0; -} -.btn-group > .btn:first-child:not(:last-child):not(.dropdown-toggle) { - border-top-right-radius: 0; - border-bottom-right-radius: 0; -} -.btn-group > .btn:last-child:not(:first-child), -.btn-group > .dropdown-toggle:not(:first-child) { - border-top-left-radius: 0; - border-bottom-left-radius: 0; -} -.btn-group > .btn-group { - float: left; -} -.btn-group > .btn-group:not(:first-child):not(:last-child) > .btn { - border-radius: 0; -} -.btn-group > .btn-group:first-child:not(:last-child) > .btn:last-child, -.btn-group > .btn-group:first-child:not(:last-child) > .dropdown-toggle { - border-top-right-radius: 0; - border-bottom-right-radius: 0; -} -.btn-group > .btn-group:last-child:not(:first-child) > .btn:first-child { - border-top-left-radius: 0; - border-bottom-left-radius: 0; -} -.btn-group .dropdown-toggle:active, -.btn-group.open .dropdown-toggle { - outline: 0; -} -.btn-group > .btn + .dropdown-toggle { - padding-right: 8px; - padding-left: 8px; -} -.btn-group > .btn-lg + .dropdown-toggle { - padding-right: 12px; - padding-left: 12px; -} -.btn-group.open .dropdown-toggle { - -webkit-box-shadow: inset 0 3px 5px rgba(0, 0, 0, .125); - box-shadow: inset 0 3px 5px rgba(0, 0, 0, .125); -} -.btn-group.open .dropdown-toggle.btn-link { - -webkit-box-shadow: none; - box-shadow: none; -} -.btn .caret { - margin-left: 0; -} -.btn-lg .caret { - border-width: 5px 5px 0; - border-bottom-width: 0; -} -.dropup .btn-lg .caret { - border-width: 0 5px 5px; -} -.btn-group-vertical > .btn, -.btn-group-vertical > .btn-group, -.btn-group-vertical > .btn-group > .btn { - display: block; - float: none; - width: 100%; - max-width: 100%; -} -.btn-group-vertical > .btn-group > .btn { - float: none; -} -.btn-group-vertical > .btn + .btn, -.btn-group-vertical > .btn + .btn-group, -.btn-group-vertical > .btn-group + .btn, -.btn-group-vertical > .btn-group + .btn-group { - margin-top: -1px; - margin-left: 0; -} -.btn-group-vertical > .btn:not(:first-child):not(:last-child) { - border-radius: 0; -} -.btn-group-vertical > .btn:first-child:not(:last-child) { - border-top-left-radius: 4px; - border-top-right-radius: 4px; - border-bottom-right-radius: 0; - border-bottom-left-radius: 0; -} -.btn-group-vertical > .btn:last-child:not(:first-child) { - border-top-left-radius: 0; - border-top-right-radius: 0; - border-bottom-right-radius: 4px; - border-bottom-left-radius: 4px; -} -.btn-group-vertical > .btn-group:not(:first-child):not(:last-child) > .btn { - border-radius: 0; -} -.btn-group-vertical > .btn-group:first-child:not(:last-child) > .btn:last-child, -.btn-group-vertical > .btn-group:first-child:not(:last-child) > .dropdown-toggle { - border-bottom-right-radius: 0; - border-bottom-left-radius: 0; -} -.btn-group-vertical > .btn-group:last-child:not(:first-child) > .btn:first-child { - border-top-left-radius: 0; - border-top-right-radius: 0; -} -.btn-group-justified { - display: table; - width: 100%; - table-layout: fixed; - border-collapse: separate; -} -.btn-group-justified > .btn, -.btn-group-justified > .btn-group { - display: table-cell; - float: none; - width: 1%; -} -.btn-group-justified > .btn-group .btn { - width: 100%; -} -.btn-group-justified > .btn-group .dropdown-menu { - left: auto; -} -[data-toggle="buttons"] > .btn input[type="radio"], -[data-toggle="buttons"] > .btn-group > .btn input[type="radio"], -[data-toggle="buttons"] > .btn input[type="checkbox"], -[data-toggle="buttons"] > .btn-group > .btn input[type="checkbox"] { - position: absolute; - clip: rect(0, 0, 0, 0); - pointer-events: none; -} -.input-group { - position: relative; - display: table; - border-collapse: separate; -} -.input-group[class*="col-"] { - float: none; - padding-right: 0; - padding-left: 0; -} -.input-group .form-control { - position: relative; - z-index: 2; - float: left; - width: 100%; - margin-bottom: 0; -} -.input-group .form-control:focus { - z-index: 3; -} -.input-group-lg > .form-control, -.input-group-lg > .input-group-addon, -.input-group-lg > .input-group-btn > .btn { - height: 46px; - padding: 10px 16px; - font-size: 18px; - line-height: 1.3333333; - border-radius: 6px; -} -select.input-group-lg > .form-control, -select.input-group-lg > .input-group-addon, -select.input-group-lg > .input-group-btn > .btn { - height: 46px; - line-height: 46px; -} -textarea.input-group-lg > .form-control, -textarea.input-group-lg > .input-group-addon, -textarea.input-group-lg > .input-group-btn > .btn, -select[multiple].input-group-lg > .form-control, -select[multiple].input-group-lg > .input-group-addon, -select[multiple].input-group-lg > .input-group-btn > .btn { - height: auto; -} -.input-group-sm > .form-control, -.input-group-sm > .input-group-addon, -.input-group-sm > .input-group-btn > .btn { - height: 30px; - padding: 5px 10px; - font-size: 12px; - line-height: 1.5; - border-radius: 3px; -} -select.input-group-sm > .form-control, -select.input-group-sm > .input-group-addon, -select.input-group-sm > .input-group-btn > .btn { - height: 30px; - line-height: 30px; -} -textarea.input-group-sm > .form-control, -textarea.input-group-sm > .input-group-addon, -textarea.input-group-sm > .input-group-btn > .btn, -select[multiple].input-group-sm > .form-control, -select[multiple].input-group-sm > .input-group-addon, -select[multiple].input-group-sm > .input-group-btn > .btn { - height: auto; -} -.input-group-addon, -.input-group-btn, -.input-group .form-control { - display: table-cell; -} -.input-group-addon:not(:first-child):not(:last-child), -.input-group-btn:not(:first-child):not(:last-child), -.input-group .form-control:not(:first-child):not(:last-child) { - border-radius: 0; -} -.input-group-addon, -.input-group-btn { - width: 1%; - white-space: nowrap; - vertical-align: middle; -} -.input-group-addon { - padding: 6px 12px; - font-size: 14px; - font-weight: normal; - line-height: 1; - color: #555; - text-align: center; - background-color: #eee; - border: 1px solid #ccc; - border-radius: 4px; -} -.input-group-addon.input-sm { - padding: 5px 10px; - font-size: 12px; - border-radius: 3px; -} -.input-group-addon.input-lg { - padding: 10px 16px; - font-size: 18px; - border-radius: 6px; -} -.input-group-addon input[type="radio"], -.input-group-addon input[type="checkbox"] { - margin-top: 0; -} -.input-group .form-control:first-child, -.input-group-addon:first-child, -.input-group-btn:first-child > .btn, -.input-group-btn:first-child > .btn-group > .btn, -.input-group-btn:first-child > .dropdown-toggle, -.input-group-btn:last-child > .btn:not(:last-child):not(.dropdown-toggle), -.input-group-btn:last-child > .btn-group:not(:last-child) > .btn { - border-top-right-radius: 0; - border-bottom-right-radius: 0; -} -.input-group-addon:first-child { - border-right: 0; -} -.input-group .form-control:last-child, -.input-group-addon:last-child, -.input-group-btn:last-child > .btn, -.input-group-btn:last-child > .btn-group > .btn, -.input-group-btn:last-child > .dropdown-toggle, -.input-group-btn:first-child > .btn:not(:first-child), -.input-group-btn:first-child > .btn-group:not(:first-child) > .btn { - border-top-left-radius: 0; - border-bottom-left-radius: 0; -} -.input-group-addon:last-child { - border-left: 0; -} -.input-group-btn { - position: relative; - font-size: 0; - white-space: nowrap; -} -.input-group-btn > .btn { - position: relative; -} -.input-group-btn > .btn + .btn { - margin-left: -1px; -} -.input-group-btn > .btn:hover, -.input-group-btn > .btn:focus, -.input-group-btn > .btn:active { - z-index: 2; -} -.input-group-btn:first-child > .btn, -.input-group-btn:first-child > .btn-group { - margin-right: -1px; -} -.input-group-btn:last-child > .btn, -.input-group-btn:last-child > .btn-group { - z-index: 2; - margin-left: -1px; -} -.nav { - padding-left: 0; - margin-bottom: 0; - list-style: none; -} -.nav > li { - position: relative; - display: block; -} -.nav > li > a { - position: relative; - display: block; - padding: 10px 15px; -} -.nav > li > a:hover, -.nav > li > a:focus { - text-decoration: none; - background-color: #eee; -} -.nav > li.disabled > a { - color: #777; -} -.nav > li.disabled > a:hover, -.nav > li.disabled > a:focus { - color: #777; - text-decoration: none; - cursor: not-allowed; - background-color: transparent; -} -.nav .open > a, -.nav .open > a:hover, -.nav .open > a:focus { - background-color: #eee; - border-color: #337ab7; -} -.nav .nav-divider { - height: 1px; - margin: 9px 0; - overflow: hidden; - background-color: #e5e5e5; -} -.nav > li > a > img { - max-width: none; -} -.nav-tabs { - border-bottom: 1px solid #ddd; -} -.nav-tabs > li { - float: left; - margin-bottom: -1px; -} -.nav-tabs > li > a { - margin-right: 2px; - line-height: 1.42857143; - border: 1px solid transparent; - border-radius: 4px 4px 0 0; -} -.nav-tabs > li > a:hover { - border-color: #eee #eee #ddd; -} -.nav-tabs > li.active > a, -.nav-tabs > li.active > a:hover, -.nav-tabs > li.active > a:focus { - color: #555; - cursor: default; - background-color: #fff; - border: 1px solid #ddd; - border-bottom-color: transparent; -} -.nav-tabs.nav-justified { - width: 100%; - border-bottom: 0; -} -.nav-tabs.nav-justified > li { - float: none; -} -.nav-tabs.nav-justified > li > a { - margin-bottom: 5px; - text-align: center; -} -.nav-tabs.nav-justified > .dropdown .dropdown-menu { - top: auto; - left: auto; -} -@media (min-width: 768px) { - .nav-tabs.nav-justified > li { - display: table-cell; - width: 1%; - } - .nav-tabs.nav-justified > li > a { - margin-bottom: 0; - } -} -.nav-tabs.nav-justified > li > a { - margin-right: 0; - border-radius: 4px; -} -.nav-tabs.nav-justified > .active > a, -.nav-tabs.nav-justified > .active > a:hover, -.nav-tabs.nav-justified > .active > a:focus { - border: 1px solid #ddd; -} -@media (min-width: 768px) { - .nav-tabs.nav-justified > li > a { - border-bottom: 1px solid #ddd; - border-radius: 4px 4px 0 0; - } - .nav-tabs.nav-justified > .active > a, - .nav-tabs.nav-justified > .active > a:hover, - .nav-tabs.nav-justified > .active > a:focus { - border-bottom-color: #fff; - } -} -.nav-pills > li { - float: left; -} -.nav-pills > li > a { - border-radius: 4px; -} -.nav-pills > li + li { - margin-left: 2px; -} -.nav-pills > li.active > a, -.nav-pills > li.active > a:hover, -.nav-pills > li.active > a:focus { - color: #fff; - background-color: #337ab7; -} -.nav-stacked > li { - float: none; -} -.nav-stacked > li + li { - margin-top: 2px; - margin-left: 0; -} -.nav-justified { - width: 100%; -} -.nav-justified > li { - float: none; -} -.nav-justified > li > a { - margin-bottom: 5px; - text-align: center; -} -.nav-justified > .dropdown .dropdown-menu { - top: auto; - left: auto; -} -@media (min-width: 768px) { - .nav-justified > li { - display: table-cell; - width: 1%; - } - .nav-justified > li > a { - margin-bottom: 0; - } -} -.nav-tabs-justified { - border-bottom: 0; -} -.nav-tabs-justified > li > a { - margin-right: 0; - border-radius: 4px; -} -.nav-tabs-justified > .active > a, -.nav-tabs-justified > .active > a:hover, -.nav-tabs-justified > .active > a:focus { - border: 1px solid #ddd; -} -@media (min-width: 768px) { - .nav-tabs-justified > li > a { - border-bottom: 1px solid #ddd; - border-radius: 4px 4px 0 0; - } - .nav-tabs-justified > .active > a, - .nav-tabs-justified > .active > a:hover, - .nav-tabs-justified > .active > a:focus { - border-bottom-color: #fff; - } -} -.tab-content > .tab-pane { - display: none; -} -.tab-content > .active { - display: block; -} -.nav-tabs .dropdown-menu { - margin-top: -1px; - border-top-left-radius: 0; - border-top-right-radius: 0; -} -.navbar { - position: relative; - min-height: 50px; - margin-bottom: 20px; - border: 1px solid transparent; -} -@media (min-width: 768px) { - .navbar { - border-radius: 4px; - } -} -@media (min-width: 768px) { - .navbar-header { - float: left; - } -} -.navbar-collapse { - padding-right: 15px; - padding-left: 15px; - overflow-x: visible; - -webkit-overflow-scrolling: touch; - border-top: 1px solid transparent; - -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .1); - box-shadow: inset 0 1px 0 rgba(255, 255, 255, .1); -} -.navbar-collapse.in { - overflow-y: auto; -} -@media (min-width: 768px) { - .navbar-collapse { - width: auto; - border-top: 0; - -webkit-box-shadow: none; - box-shadow: none; - } - .navbar-collapse.collapse { - display: block !important; - height: auto !important; - padding-bottom: 0; - overflow: visible !important; - } - .navbar-collapse.in { - overflow-y: visible; - } - .navbar-fixed-top .navbar-collapse, - .navbar-static-top .navbar-collapse, - .navbar-fixed-bottom .navbar-collapse { - padding-right: 0; - padding-left: 0; - } -} -.navbar-fixed-top .navbar-collapse, -.navbar-fixed-bottom .navbar-collapse { - max-height: 340px; -} -@media (max-device-width: 480px) and (orientation: landscape) { - .navbar-fixed-top .navbar-collapse, - .navbar-fixed-bottom .navbar-collapse { - max-height: 200px; - } -} -.container > .navbar-header, -.container-fluid > .navbar-header, -.container > .navbar-collapse, -.container-fluid > .navbar-collapse { - margin-right: -15px; - margin-left: -15px; -} -@media (min-width: 768px) { - .container > .navbar-header, - .container-fluid > .navbar-header, - .container > .navbar-collapse, - .container-fluid > .navbar-collapse { - margin-right: 0; - margin-left: 0; - } -} -.navbar-static-top { - z-index: 1000; - border-width: 0 0 1px; -} -@media (min-width: 768px) { - .navbar-static-top { - border-radius: 0; - } -} -.navbar-fixed-top, -.navbar-fixed-bottom { - position: fixed; - right: 0; - left: 0; - z-index: 1030; -} -@media (min-width: 768px) { - .navbar-fixed-top, - .navbar-fixed-bottom { - border-radius: 0; - } -} -.navbar-fixed-top { - top: 0; - border-width: 0 0 1px; -} -.navbar-fixed-bottom { - bottom: 0; - margin-bottom: 0; - border-width: 1px 0 0; -} -.navbar-brand { - float: left; - height: 50px; - padding: 15px 15px; - font-size: 18px; - line-height: 20px; -} -.navbar-brand:hover, -.navbar-brand:focus { - text-decoration: none; -} -.navbar-brand > img { - display: block; -} -@media (min-width: 768px) { - .navbar > .container .navbar-brand, - .navbar > .container-fluid .navbar-brand { - margin-left: -15px; - } -} -.navbar-toggle { - position: relative; - float: right; - padding: 9px 10px; - margin-top: 8px; - margin-right: 15px; - margin-bottom: 8px; - background-color: transparent; - background-image: none; - border: 1px solid transparent; - border-radius: 4px; -} -.navbar-toggle:focus { - outline: 0; -} -.navbar-toggle .icon-bar { - display: block; - width: 22px; - height: 2px; - border-radius: 1px; -} -.navbar-toggle .icon-bar + .icon-bar { - margin-top: 4px; -} -@media (min-width: 768px) { - .navbar-toggle { - display: none; - } -} -.navbar-nav { - margin: 7.5px -15px; -} -.navbar-nav > li > a { - padding-top: 10px; - padding-bottom: 10px; - line-height: 20px; -} -@media (max-width: 767px) { - .navbar-nav .open .dropdown-menu { - position: static; - float: none; - width: auto; - margin-top: 0; - background-color: transparent; - border: 0; - -webkit-box-shadow: none; - box-shadow: none; - } - .navbar-nav .open .dropdown-menu > li > a, - .navbar-nav .open .dropdown-menu .dropdown-header { - padding: 5px 15px 5px 25px; - } - .navbar-nav .open .dropdown-menu > li > a { - line-height: 20px; - } - .navbar-nav .open .dropdown-menu > li > a:hover, - .navbar-nav .open .dropdown-menu > li > a:focus { - background-image: none; - } -} -@media (min-width: 768px) { - .navbar-nav { - float: left; - margin: 0; - } - .navbar-nav > li { - float: left; - } - .navbar-nav > li > a { - padding-top: 15px; - padding-bottom: 15px; - } -} -.navbar-form { - padding: 10px 15px; - margin-top: 8px; - margin-right: -15px; - margin-bottom: 8px; - margin-left: -15px; - border-top: 1px solid transparent; - border-bottom: 1px solid transparent; - -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .1), 0 1px 0 rgba(255, 255, 255, .1); - box-shadow: inset 0 1px 0 rgba(255, 255, 255, .1), 0 1px 0 rgba(255, 255, 255, .1); -} -@media (min-width: 768px) { - .navbar-form .form-group { - display: inline-block; - margin-bottom: 0; - vertical-align: middle; - } - .navbar-form .form-control { - display: inline-block; - width: auto; - vertical-align: middle; - } - .navbar-form .form-control-static { - display: inline-block; - } - .navbar-form .input-group { - display: inline-table; - vertical-align: middle; - } - .navbar-form .input-group .input-group-addon, - .navbar-form .input-group .input-group-btn, - .navbar-form .input-group .form-control { - width: auto; - } - .navbar-form .input-group > .form-control { - width: 100%; - } - .navbar-form .control-label { - margin-bottom: 0; - vertical-align: middle; - } - .navbar-form .radio, - .navbar-form .checkbox { - display: inline-block; - margin-top: 0; - margin-bottom: 0; - vertical-align: middle; - } - .navbar-form .radio label, - .navbar-form .checkbox label { - padding-left: 0; - } - .navbar-form .radio input[type="radio"], - .navbar-form .checkbox input[type="checkbox"] { - position: relative; - margin-left: 0; - } - .navbar-form .has-feedback .form-control-feedback { - top: 0; - } -} -@media (max-width: 767px) { - .navbar-form .form-group { - margin-bottom: 5px; - } - .navbar-form .form-group:last-child { - margin-bottom: 0; - } -} -@media (min-width: 768px) { - .navbar-form { - width: auto; - padding-top: 0; - padding-bottom: 0; - margin-right: 0; - margin-left: 0; - border: 0; - -webkit-box-shadow: none; - box-shadow: none; - } -} -.navbar-nav > li > .dropdown-menu { - margin-top: 0; - border-top-left-radius: 0; - border-top-right-radius: 0; -} -.navbar-fixed-bottom .navbar-nav > li > .dropdown-menu { - margin-bottom: 0; - border-top-left-radius: 4px; - border-top-right-radius: 4px; - border-bottom-right-radius: 0; - border-bottom-left-radius: 0; -} -.navbar-btn { - margin-top: 8px; - margin-bottom: 8px; -} -.navbar-btn.btn-sm { - margin-top: 10px; - margin-bottom: 10px; -} -.navbar-btn.btn-xs { - margin-top: 14px; - margin-bottom: 14px; -} -.navbar-text { - margin-top: 15px; - margin-bottom: 15px; -} -@media (min-width: 768px) { - .navbar-text { - float: left; - margin-right: 15px; - margin-left: 15px; - } -} -@media (min-width: 768px) { - .navbar-left { - float: left !important; - } - .navbar-right { - float: right !important; - margin-right: -15px; - } - .navbar-right ~ .navbar-right { - margin-right: 0; - } -} -.navbar-default { - background-color: #f8f8f8; - border-color: #e7e7e7; -} -.navbar-default .navbar-brand { - color: #777; -} -.navbar-default .navbar-brand:hover, -.navbar-default .navbar-brand:focus { - color: #5e5e5e; - background-color: transparent; -} -.navbar-default .navbar-text { - color: #777; -} -.navbar-default .navbar-nav > li > a { - color: #777; -} -.navbar-default .navbar-nav > li > a:hover, -.navbar-default .navbar-nav > li > a:focus { - color: #333; - background-color: transparent; -} -.navbar-default .navbar-nav > .active > a, -.navbar-default .navbar-nav > .active > a:hover, -.navbar-default .navbar-nav > .active > a:focus { - color: #555; - background-color: #e7e7e7; -} -.navbar-default .navbar-nav > .disabled > a, -.navbar-default .navbar-nav > .disabled > a:hover, -.navbar-default .navbar-nav > .disabled > a:focus { - color: #ccc; - background-color: transparent; -} -.navbar-default .navbar-toggle { - border-color: #ddd; -} -.navbar-default .navbar-toggle:hover, -.navbar-default .navbar-toggle:focus { - background-color: #ddd; -} -.navbar-default .navbar-toggle .icon-bar { - background-color: #888; -} -.navbar-default .navbar-collapse, -.navbar-default .navbar-form { - border-color: #e7e7e7; -} -.navbar-default .navbar-nav > .open > a, -.navbar-default .navbar-nav > .open > a:hover, -.navbar-default .navbar-nav > .open > a:focus { - color: #555; - background-color: #e7e7e7; -} -@media (max-width: 767px) { - .navbar-default .navbar-nav .open .dropdown-menu > li > a { - color: #777; - } - .navbar-default .navbar-nav .open .dropdown-menu > li > a:hover, - .navbar-default .navbar-nav .open .dropdown-menu > li > a:focus { - color: #333; - background-color: transparent; - } - .navbar-default .navbar-nav .open .dropdown-menu > .active > a, - .navbar-default .navbar-nav .open .dropdown-menu > .active > a:hover, - .navbar-default .navbar-nav .open .dropdown-menu > .active > a:focus { - color: #555; - background-color: #e7e7e7; - } - .navbar-default .navbar-nav .open .dropdown-menu > .disabled > a, - .navbar-default .navbar-nav .open .dropdown-menu > .disabled > a:hover, - .navbar-default .navbar-nav .open .dropdown-menu > .disabled > a:focus { - color: #ccc; - background-color: transparent; - } -} -.navbar-default .navbar-link { - color: #777; -} -.navbar-default .navbar-link:hover { - color: #333; -} -.navbar-default .btn-link { - color: #777; -} -.navbar-default .btn-link:hover, -.navbar-default .btn-link:focus { - color: #333; -} -.navbar-default .btn-link[disabled]:hover, -fieldset[disabled] .navbar-default .btn-link:hover, -.navbar-default .btn-link[disabled]:focus, -fieldset[disabled] .navbar-default .btn-link:focus { - color: #ccc; -} -.navbar-inverse { - background-color: #222; - border-color: #080808; -} -.navbar-inverse .navbar-brand { - color: #9d9d9d; -} -.navbar-inverse .navbar-brand:hover, -.navbar-inverse .navbar-brand:focus { - color: #fff; - background-color: transparent; -} -.navbar-inverse .navbar-text { - color: #9d9d9d; -} -.navbar-inverse .navbar-nav > li > a { - color: #9d9d9d; -} -.navbar-inverse .navbar-nav > li > a:hover, -.navbar-inverse .navbar-nav > li > a:focus { - color: #fff; - background-color: transparent; -} -.navbar-inverse .navbar-nav > .active > a, -.navbar-inverse .navbar-nav > .active > a:hover, -.navbar-inverse .navbar-nav > .active > a:focus { - color: #fff; - background-color: #080808; -} -.navbar-inverse .navbar-nav > .disabled > a, -.navbar-inverse .navbar-nav > .disabled > a:hover, -.navbar-inverse .navbar-nav > .disabled > a:focus { - color: #444; - background-color: transparent; -} -.navbar-inverse .navbar-toggle { - border-color: #333; -} -.navbar-inverse .navbar-toggle:hover, -.navbar-inverse .navbar-toggle:focus { - background-color: #333; -} -.navbar-inverse .navbar-toggle .icon-bar { - background-color: #fff; -} -.navbar-inverse .navbar-collapse, -.navbar-inverse .navbar-form { - border-color: #101010; -} -.navbar-inverse .navbar-nav > .open > a, -.navbar-inverse .navbar-nav > .open > a:hover, -.navbar-inverse .navbar-nav > .open > a:focus { - color: #fff; - background-color: #080808; -} -@media (max-width: 767px) { - .navbar-inverse .navbar-nav .open .dropdown-menu > .dropdown-header { - border-color: #080808; - } - .navbar-inverse .navbar-nav .open .dropdown-menu .divider { - background-color: #080808; - } - .navbar-inverse .navbar-nav .open .dropdown-menu > li > a { - color: #9d9d9d; - } - .navbar-inverse .navbar-nav .open .dropdown-menu > li > a:hover, - .navbar-inverse .navbar-nav .open .dropdown-menu > li > a:focus { - color: #fff; - background-color: transparent; - } - .navbar-inverse .navbar-nav .open .dropdown-menu > .active > a, - .navbar-inverse .navbar-nav .open .dropdown-menu > .active > a:hover, - .navbar-inverse .navbar-nav .open .dropdown-menu > .active > a:focus { - color: #fff; - background-color: #080808; - } - .navbar-inverse .navbar-nav .open .dropdown-menu > .disabled > a, - .navbar-inverse .navbar-nav .open .dropdown-menu > .disabled > a:hover, - .navbar-inverse .navbar-nav .open .dropdown-menu > .disabled > a:focus { - color: #444; - background-color: transparent; - } -} -.navbar-inverse .navbar-link { - color: #9d9d9d; -} -.navbar-inverse .navbar-link:hover { - color: #fff; -} -.navbar-inverse .btn-link { - color: #9d9d9d; -} -.navbar-inverse .btn-link:hover, -.navbar-inverse .btn-link:focus { - color: #fff; -} -.navbar-inverse .btn-link[disabled]:hover, -fieldset[disabled] .navbar-inverse .btn-link:hover, -.navbar-inverse .btn-link[disabled]:focus, -fieldset[disabled] .navbar-inverse .btn-link:focus { - color: #444; -} -.breadcrumb { - padding: 8px 15px; - margin-bottom: 20px; - list-style: none; - background-color: #f5f5f5; - border-radius: 4px; -} -.breadcrumb > li { - display: inline-block; -} -.breadcrumb > li + li:before { - padding: 0 5px; - color: #ccc; - content: "/\00a0"; -} -.breadcrumb > .active { - color: #777; -} -.pagination { - display: inline-block; - padding-left: 0; - margin: 20px 0; - border-radius: 4px; -} -.pagination > li { - display: inline; -} -.pagination > li > a, -.pagination > li > span { - position: relative; - float: left; - padding: 6px 12px; - margin-left: -1px; - line-height: 1.42857143; - color: #337ab7; - text-decoration: none; - background-color: #fff; - border: 1px solid #ddd; -} -.pagination > li:first-child > a, -.pagination > li:first-child > span { - margin-left: 0; - border-top-left-radius: 4px; - border-bottom-left-radius: 4px; -} -.pagination > li:last-child > a, -.pagination > li:last-child > span { - border-top-right-radius: 4px; - border-bottom-right-radius: 4px; -} -.pagination > li > a:hover, -.pagination > li > span:hover, -.pagination > li > a:focus, -.pagination > li > span:focus { - z-index: 2; - color: #23527c; - background-color: #eee; - border-color: #ddd; -} -.pagination > .active > a, -.pagination > .active > span, -.pagination > .active > a:hover, -.pagination > .active > span:hover, -.pagination > .active > a:focus, -.pagination > .active > span:focus { - z-index: 3; - color: #fff; - cursor: default; - background-color: #337ab7; - border-color: #337ab7; -} -.pagination > .disabled > span, -.pagination > .disabled > span:hover, -.pagination > .disabled > span:focus, -.pagination > .disabled > a, -.pagination > .disabled > a:hover, -.pagination > .disabled > a:focus { - color: #777; - cursor: not-allowed; - background-color: #fff; - border-color: #ddd; -} -.pagination-lg > li > a, -.pagination-lg > li > span { - padding: 10px 16px; - font-size: 18px; - line-height: 1.3333333; -} -.pagination-lg > li:first-child > a, -.pagination-lg > li:first-child > span { - border-top-left-radius: 6px; - border-bottom-left-radius: 6px; -} -.pagination-lg > li:last-child > a, -.pagination-lg > li:last-child > span { - border-top-right-radius: 6px; - border-bottom-right-radius: 6px; -} -.pagination-sm > li > a, -.pagination-sm > li > span { - padding: 5px 10px; - font-size: 12px; - line-height: 1.5; -} -.pagination-sm > li:first-child > a, -.pagination-sm > li:first-child > span { - border-top-left-radius: 3px; - border-bottom-left-radius: 3px; -} -.pagination-sm > li:last-child > a, -.pagination-sm > li:last-child > span { - border-top-right-radius: 3px; - border-bottom-right-radius: 3px; -} -.pager { - padding-left: 0; - margin: 20px 0; - text-align: center; - list-style: none; -} -.pager li { - display: inline; -} -.pager li > a, -.pager li > span { - display: inline-block; - padding: 5px 14px; - background-color: #fff; - border: 1px solid #ddd; - border-radius: 15px; -} -.pager li > a:hover, -.pager li > a:focus { - text-decoration: none; - background-color: #eee; -} -.pager .next > a, -.pager .next > span { - float: right; -} -.pager .previous > a, -.pager .previous > span { - float: left; -} -.pager .disabled > a, -.pager .disabled > a:hover, -.pager .disabled > a:focus, -.pager .disabled > span { - color: #777; - cursor: not-allowed; - background-color: #fff; -} -.label { - display: inline; - padding: .2em .6em .3em; - font-size: 75%; - font-weight: bold; - line-height: 1; - color: #fff; - text-align: center; - white-space: nowrap; - vertical-align: baseline; - border-radius: .25em; -} -a.label:hover, -a.label:focus { - color: #fff; - text-decoration: none; - cursor: pointer; -} -.label:empty { - display: none; -} -.btn .label { - position: relative; - top: -1px; -} -.label-default { - background-color: #777; -} -.label-default[href]:hover, -.label-default[href]:focus { - background-color: #5e5e5e; -} -.label-primary { - background-color: #337ab7; -} -.label-primary[href]:hover, -.label-primary[href]:focus { - background-color: #286090; -} -.label-success { - background-color: #5cb85c; -} -.label-success[href]:hover, -.label-success[href]:focus { - background-color: #449d44; -} -.label-info { - background-color: #5bc0de; -} -.label-info[href]:hover, -.label-info[href]:focus { - background-color: #31b0d5; -} -.label-warning { - background-color: #f0ad4e; -} -.label-warning[href]:hover, -.label-warning[href]:focus { - background-color: #ec971f; -} -.label-danger { - background-color: #d9534f; -} -.label-danger[href]:hover, -.label-danger[href]:focus { - background-color: #c9302c; -} -.badge { - display: inline-block; - min-width: 10px; - padding: 3px 7px; - font-size: 12px; - font-weight: bold; - line-height: 1; - color: #fff; - text-align: center; - white-space: nowrap; - vertical-align: middle; - background-color: #777; - border-radius: 10px; -} -.badge:empty { - display: none; -} -.btn .badge { - position: relative; - top: -1px; -} -.btn-xs .badge, -.btn-group-xs > .btn .badge { - top: 0; - padding: 1px 5px; -} -a.badge:hover, -a.badge:focus { - color: #fff; - text-decoration: none; - cursor: pointer; -} -.list-group-item.active > .badge, -.nav-pills > .active > a > .badge { - color: #337ab7; - background-color: #fff; -} -.list-group-item > .badge { - float: right; -} -.list-group-item > .badge + .badge { - margin-right: 5px; -} -.nav-pills > li > a > .badge { - margin-left: 3px; -} -.jumbotron { - padding-top: 30px; - padding-bottom: 30px; - margin-bottom: 30px; - color: inherit; - background-color: #eee; -} -.jumbotron h1, -.jumbotron .h1 { - color: inherit; -} -.jumbotron p { - margin-bottom: 15px; - font-size: 21px; - font-weight: 200; -} -.jumbotron > hr { - border-top-color: #d5d5d5; -} -.container .jumbotron, -.container-fluid .jumbotron { - padding-right: 15px; - padding-left: 15px; - border-radius: 6px; -} -.jumbotron .container { - max-width: 100%; -} -@media screen and (min-width: 768px) { - .jumbotron { - padding-top: 48px; - padding-bottom: 48px; - } - .container .jumbotron, - .container-fluid .jumbotron { - padding-right: 60px; - padding-left: 60px; - } - .jumbotron h1, - .jumbotron .h1 { - font-size: 63px; - } -} -.thumbnail { - display: block; - padding: 4px; - margin-bottom: 20px; - line-height: 1.42857143; - background-color: #fff; - border: 1px solid #ddd; - border-radius: 4px; - -webkit-transition: border .2s ease-in-out; - -o-transition: border .2s ease-in-out; - transition: border .2s ease-in-out; -} -.thumbnail > img, -.thumbnail a > img { - margin-right: auto; - margin-left: auto; -} -a.thumbnail:hover, -a.thumbnail:focus, -a.thumbnail.active { - border-color: #337ab7; -} -.thumbnail .caption { - padding: 9px; - color: #333; -} -.alert { - padding: 15px; - margin-bottom: 20px; - border: 1px solid transparent; - border-radius: 4px; -} -.alert h4 { - margin-top: 0; - color: inherit; -} -.alert .alert-link { - font-weight: bold; -} -.alert > p, -.alert > ul { - margin-bottom: 0; -} -.alert > p + p { - margin-top: 5px; -} -.alert-dismissable, -.alert-dismissible { - padding-right: 35px; -} -.alert-dismissable .close, -.alert-dismissible .close { - position: relative; - top: -2px; - right: -21px; - color: inherit; -} -.alert-success { - color: #3c763d; - background-color: #dff0d8; - border-color: #d6e9c6; -} -.alert-success hr { - border-top-color: #c9e2b3; -} -.alert-success .alert-link { - color: #2b542c; -} -.alert-info { - color: #31708f; - background-color: #d9edf7; - border-color: #bce8f1; -} -.alert-info hr { - border-top-color: #a6e1ec; -} -.alert-info .alert-link { - color: #245269; -} -.alert-warning { - color: #8a6d3b; - background-color: #fcf8e3; - border-color: #faebcc; -} -.alert-warning hr { - border-top-color: #f7e1b5; -} -.alert-warning .alert-link { - color: #66512c; -} -.alert-danger { - color: #a94442; - background-color: #f2dede; - border-color: #ebccd1; -} -.alert-danger hr { - border-top-color: #e4b9c0; -} -.alert-danger .alert-link { - color: #843534; -} -@-webkit-keyframes progress-bar-stripes { - from { - background-position: 40px 0; - } - to { - background-position: 0 0; - } -} -@-o-keyframes progress-bar-stripes { - from { - background-position: 40px 0; - } - to { - background-position: 0 0; - } -} -@keyframes progress-bar-stripes { - from { - background-position: 40px 0; - } - to { - background-position: 0 0; - } -} -.progress { - height: 20px; - margin-bottom: 20px; - overflow: hidden; - background-color: #f5f5f5; - border-radius: 4px; - -webkit-box-shadow: inset 0 1px 2px rgba(0, 0, 0, .1); - box-shadow: inset 0 1px 2px rgba(0, 0, 0, .1); -} -.progress-bar { - float: left; - width: 0; - height: 100%; - font-size: 12px; - line-height: 20px; - color: #fff; - text-align: center; - background-color: #337ab7; - -webkit-box-shadow: inset 0 -1px 0 rgba(0, 0, 0, .15); - box-shadow: inset 0 -1px 0 rgba(0, 0, 0, .15); - -webkit-transition: width .6s ease; - -o-transition: width .6s ease; - transition: width .6s ease; -} -.progress-striped .progress-bar, -.progress-bar-striped { - background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent); - background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent); - background-image: linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent); - -webkit-background-size: 40px 40px; - background-size: 40px 40px; -} -.progress.active .progress-bar, -.progress-bar.active { - -webkit-animation: progress-bar-stripes 2s linear infinite; - -o-animation: progress-bar-stripes 2s linear infinite; - animation: progress-bar-stripes 2s linear infinite; -} -.progress-bar-success { - background-color: #5cb85c; -} -.progress-striped .progress-bar-success { - background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent); - background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent); - background-image: linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent); -} -.progress-bar-info { - background-color: #5bc0de; -} -.progress-striped .progress-bar-info { - background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent); - background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent); - background-image: linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent); -} -.progress-bar-warning { - background-color: #f0ad4e; -} -.progress-striped .progress-bar-warning { - background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent); - background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent); - background-image: linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent); -} -.progress-bar-danger { - background-color: #d9534f; -} -.progress-striped .progress-bar-danger { - background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent); - background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent); - background-image: linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent); -} -.media { - margin-top: 15px; -} -.media:first-child { - margin-top: 0; -} -.media, -.media-body { - overflow: hidden; - zoom: 1; -} -.media-body { - width: 10000px; -} -.media-object { - display: block; -} -.media-object.img-thumbnail { - max-width: none; -} -.media-right, -.media > .pull-right { - padding-left: 10px; -} -.media-left, -.media > .pull-left { - padding-right: 10px; -} -.media-left, -.media-right, -.media-body { - display: table-cell; - vertical-align: top; -} -.media-middle { - vertical-align: middle; -} -.media-bottom { - vertical-align: bottom; -} -.media-heading { - margin-top: 0; - margin-bottom: 5px; -} -.media-list { - padding-left: 0; - list-style: none; -} -.list-group { - padding-left: 0; - margin-bottom: 20px; -} -.list-group-item { - position: relative; - display: block; - padding: 10px 15px; - margin-bottom: -1px; - background-color: #fff; - border: 1px solid #ddd; -} -.list-group-item:first-child { - border-top-left-radius: 4px; - border-top-right-radius: 4px; -} -.list-group-item:last-child { - margin-bottom: 0; - border-bottom-right-radius: 4px; - border-bottom-left-radius: 4px; -} -a.list-group-item, -button.list-group-item { - color: #555; -} -a.list-group-item .list-group-item-heading, -button.list-group-item .list-group-item-heading { - color: #333; -} -a.list-group-item:hover, -button.list-group-item:hover, -a.list-group-item:focus, -button.list-group-item:focus { - color: #555; - text-decoration: none; - background-color: #f5f5f5; -} -button.list-group-item { - width: 100%; - text-align: left; -} -.list-group-item.disabled, -.list-group-item.disabled:hover, -.list-group-item.disabled:focus { - color: #777; - cursor: not-allowed; - background-color: #eee; -} -.list-group-item.disabled .list-group-item-heading, -.list-group-item.disabled:hover .list-group-item-heading, -.list-group-item.disabled:focus .list-group-item-heading { - color: inherit; -} -.list-group-item.disabled .list-group-item-text, -.list-group-item.disabled:hover .list-group-item-text, -.list-group-item.disabled:focus .list-group-item-text { - color: #777; -} -.list-group-item.active, -.list-group-item.active:hover, -.list-group-item.active:focus { - z-index: 2; - color: #fff; - background-color: #337ab7; - border-color: #337ab7; -} -.list-group-item.active .list-group-item-heading, -.list-group-item.active:hover .list-group-item-heading, -.list-group-item.active:focus .list-group-item-heading, -.list-group-item.active .list-group-item-heading > small, -.list-group-item.active:hover .list-group-item-heading > small, -.list-group-item.active:focus .list-group-item-heading > small, -.list-group-item.active .list-group-item-heading > .small, -.list-group-item.active:hover .list-group-item-heading > .small, -.list-group-item.active:focus .list-group-item-heading > .small { - color: inherit; -} -.list-group-item.active .list-group-item-text, -.list-group-item.active:hover .list-group-item-text, -.list-group-item.active:focus .list-group-item-text { - color: #c7ddef; -} -.list-group-item-success { - color: #3c763d; - background-color: #dff0d8; -} -a.list-group-item-success, -button.list-group-item-success { - color: #3c763d; -} -a.list-group-item-success .list-group-item-heading, -button.list-group-item-success .list-group-item-heading { - color: inherit; -} -a.list-group-item-success:hover, -button.list-group-item-success:hover, -a.list-group-item-success:focus, -button.list-group-item-success:focus { - color: #3c763d; - background-color: #d0e9c6; -} -a.list-group-item-success.active, -button.list-group-item-success.active, -a.list-group-item-success.active:hover, -button.list-group-item-success.active:hover, -a.list-group-item-success.active:focus, -button.list-group-item-success.active:focus { - color: #fff; - background-color: #3c763d; - border-color: #3c763d; -} -.list-group-item-info { - color: #31708f; - background-color: #d9edf7; -} -a.list-group-item-info, -button.list-group-item-info { - color: #31708f; -} -a.list-group-item-info .list-group-item-heading, -button.list-group-item-info .list-group-item-heading { - color: inherit; -} -a.list-group-item-info:hover, -button.list-group-item-info:hover, -a.list-group-item-info:focus, -button.list-group-item-info:focus { - color: #31708f; - background-color: #c4e3f3; -} -a.list-group-item-info.active, -button.list-group-item-info.active, -a.list-group-item-info.active:hover, -button.list-group-item-info.active:hover, -a.list-group-item-info.active:focus, 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position: absolute; - display: block; - width: 0; - height: 0; - border-color: transparent; - border-style: solid; -} -.popover > .arrow { - border-width: 11px; -} -.popover > .arrow:after { - content: ""; - border-width: 10px; -} -.popover.top > .arrow { - bottom: -11px; - left: 50%; - margin-left: -11px; - border-top-color: #999; - border-top-color: rgba(0, 0, 0, .25); - border-bottom-width: 0; -} -.popover.top > .arrow:after { - bottom: 1px; - margin-left: -10px; - content: " "; - border-top-color: #fff; - border-bottom-width: 0; -} -.popover.right > .arrow { - top: 50%; - left: -11px; - margin-top: -11px; - border-right-color: #999; - border-right-color: rgba(0, 0, 0, .25); - border-left-width: 0; -} -.popover.right > .arrow:after { - bottom: -10px; - left: 1px; - content: " "; - border-right-color: #fff; - border-left-width: 0; -} -.popover.bottom > .arrow { - top: -11px; - left: 50%; - margin-left: -11px; - border-top-width: 0; - border-bottom-color: #999; - border-bottom-color: 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{\n font-size: 80%;\n}\nsub,\nsup {\n font-size: 75%;\n line-height: 0;\n position: relative;\n vertical-align: baseline;\n}\nsup {\n top: -0.5em;\n}\nsub {\n bottom: -0.25em;\n}\nimg {\n border: 0;\n}\nsvg:not(:root) {\n overflow: hidden;\n}\nfigure {\n margin: 1em 40px;\n}\nhr {\n box-sizing: content-box;\n height: 0;\n}\npre {\n overflow: auto;\n}\ncode,\nkbd,\npre,\nsamp {\n font-family: monospace, monospace;\n font-size: 1em;\n}\nbutton,\ninput,\noptgroup,\nselect,\ntextarea {\n color: inherit;\n font: inherit;\n margin: 0;\n}\nbutton {\n overflow: visible;\n}\nbutton,\nselect {\n text-transform: none;\n}\nbutton,\nhtml input[type=\"button\"],\ninput[type=\"reset\"],\ninput[type=\"submit\"] {\n -webkit-appearance: button;\n cursor: pointer;\n}\nbutton[disabled],\nhtml input[disabled] {\n cursor: default;\n}\nbutton::-moz-focus-inner,\ninput::-moz-focus-inner {\n border: 0;\n padding: 0;\n}\ninput {\n line-height: normal;\n}\ninput[type=\"checkbox\"],\ninput[type=\"radio\"] {\n box-sizing: border-box;\n padding: 0;\n}\ninput[type=\"number\"]::-webkit-inner-spin-button,\ninput[type=\"number\"]::-webkit-outer-spin-button {\n height: auto;\n}\ninput[type=\"search\"] {\n -webkit-appearance: textfield;\n box-sizing: content-box;\n}\ninput[type=\"search\"]::-webkit-search-cancel-button,\ninput[type=\"search\"]::-webkit-search-decoration {\n -webkit-appearance: none;\n}\nfieldset {\n border: 1px solid #c0c0c0;\n margin: 0 2px;\n padding: 0.35em 0.625em 0.75em;\n}\nlegend {\n border: 0;\n padding: 0;\n}\ntextarea {\n overflow: auto;\n}\noptgroup {\n font-weight: bold;\n}\ntable {\n border-collapse: collapse;\n border-spacing: 0;\n}\ntd,\nth {\n padding: 0;\n}\n/*! Source: https://github.com/h5bp/html5-boilerplate/blob/master/src/css/main.css */\n@media print {\n *,\n *:before,\n *:after {\n background: transparent !important;\n color: #000 !important;\n box-shadow: none !important;\n text-shadow: none !important;\n }\n a,\n a:visited {\n text-decoration: underline;\n }\n a[href]:after {\n content: \" (\" attr(href) \")\";\n }\n abbr[title]:after {\n content: \" (\" attr(title) \")\";\n }\n a[href^=\"#\"]:after,\n a[href^=\"javascript:\"]:after {\n content: \"\";\n }\n pre,\n blockquote {\n border: 1px solid #999;\n page-break-inside: avoid;\n }\n thead {\n display: table-header-group;\n }\n tr,\n img {\n page-break-inside: avoid;\n }\n img {\n max-width: 100% !important;\n }\n p,\n h2,\n h3 {\n orphans: 3;\n widows: 3;\n }\n h2,\n h3 {\n page-break-after: avoid;\n }\n .navbar {\n display: none;\n }\n .btn > .caret,\n .dropup > .btn > .caret {\n border-top-color: #000 !important;\n }\n .label {\n border: 1px solid #000;\n }\n .table {\n border-collapse: collapse !important;\n }\n .table td,\n .table th {\n background-color: #fff !important;\n }\n .table-bordered th,\n .table-bordered td {\n border: 1px solid #ddd !important;\n }\n}\n@font-face {\n font-family: 'Glyphicons Halflings';\n src: url('../fonts/glyphicons-halflings-regular.eot');\n src: url('../fonts/glyphicons-halflings-regular.eot?#iefix') format('embedded-opentype'), url('../fonts/glyphicons-halflings-regular.woff2') format('woff2'), url('../fonts/glyphicons-halflings-regular.woff') format('woff'), url('../fonts/glyphicons-halflings-regular.ttf') format('truetype'), url('../fonts/glyphicons-halflings-regular.svg#glyphicons_halflingsregular') format('svg');\n}\n.glyphicon {\n position: relative;\n top: 1px;\n display: inline-block;\n font-family: 'Glyphicons Halflings';\n font-style: normal;\n font-weight: normal;\n line-height: 1;\n -webkit-font-smoothing: antialiased;\n -moz-osx-font-smoothing: grayscale;\n}\n.glyphicon-asterisk:before {\n content: \"\\002a\";\n}\n.glyphicon-plus:before {\n content: \"\\002b\";\n}\n.glyphicon-euro:before,\n.glyphicon-eur:before {\n content: \"\\20ac\";\n}\n.glyphicon-minus:before {\n content: \"\\2212\";\n}\n.glyphicon-cloud:before {\n content: \"\\2601\";\n}\n.glyphicon-envelope:before {\n content: \"\\2709\";\n}\n.glyphicon-pencil:before {\n content: \"\\270f\";\n}\n.glyphicon-glass:before {\n content: \"\\e001\";\n}\n.glyphicon-music:before {\n content: \"\\e002\";\n}\n.glyphicon-search:before {\n content: \"\\e003\";\n}\n.glyphicon-heart:before {\n content: \"\\e005\";\n}\n.glyphicon-star:before {\n content: \"\\e006\";\n}\n.glyphicon-star-empty:before {\n content: \"\\e007\";\n}\n.glyphicon-user:before {\n content: \"\\e008\";\n}\n.glyphicon-film:before {\n content: \"\\e009\";\n}\n.glyphicon-th-large:before {\n content: \"\\e010\";\n}\n.glyphicon-th:before {\n content: \"\\e011\";\n}\n.glyphicon-th-list:before {\n content: \"\\e012\";\n}\n.glyphicon-ok:before {\n content: \"\\e013\";\n}\n.glyphicon-remove:before {\n content: \"\\e014\";\n}\n.glyphicon-zoom-in:before {\n content: \"\\e015\";\n}\n.glyphicon-zoom-out:before {\n content: \"\\e016\";\n}\n.glyphicon-off:before {\n content: \"\\e017\";\n}\n.glyphicon-signal:before {\n content: \"\\e018\";\n}\n.glyphicon-cog:before {\n content: \"\\e019\";\n}\n.glyphicon-trash:before {\n content: \"\\e020\";\n}\n.glyphicon-home:before {\n content: \"\\e021\";\n}\n.glyphicon-file:before {\n content: \"\\e022\";\n}\n.glyphicon-time:before {\n content: \"\\e023\";\n}\n.glyphicon-road:before {\n content: \"\\e024\";\n}\n.glyphicon-download-alt:before {\n content: \"\\e025\";\n}\n.glyphicon-download:before {\n content: \"\\e026\";\n}\n.glyphicon-upload:before {\n content: \"\\e027\";\n}\n.glyphicon-inbox:before {\n content: \"\\e028\";\n}\n.glyphicon-play-circle:before {\n content: \"\\e029\";\n}\n.glyphicon-repeat:before {\n content: \"\\e030\";\n}\n.glyphicon-refresh:before {\n content: \"\\e031\";\n}\n.glyphicon-list-alt:before {\n content: \"\\e032\";\n}\n.glyphicon-lock:before {\n content: \"\\e033\";\n}\n.glyphicon-flag:before {\n content: \"\\e034\";\n}\n.glyphicon-headphones:before {\n content: \"\\e035\";\n}\n.glyphicon-volume-off:before {\n content: \"\\e036\";\n}\n.glyphicon-volume-down:before {\n content: \"\\e037\";\n}\n.glyphicon-volume-up:before {\n content: \"\\e038\";\n}\n.glyphicon-qrcode:before {\n content: \"\\e039\";\n}\n.glyphicon-barcode:before {\n content: \"\\e040\";\n}\n.glyphicon-tag:before {\n content: \"\\e041\";\n}\n.glyphicon-tags:before {\n content: \"\\e042\";\n}\n.glyphicon-book:before {\n content: \"\\e043\";\n}\n.glyphicon-bookmark:before {\n content: \"\\e044\";\n}\n.glyphicon-print:before {\n content: \"\\e045\";\n}\n.glyphicon-camera:before {\n content: \"\\e046\";\n}\n.glyphicon-font:before {\n content: \"\\e047\";\n}\n.glyphicon-bold:before {\n content: \"\\e048\";\n}\n.glyphicon-italic:before {\n content: \"\\e049\";\n}\n.glyphicon-text-height:before {\n content: \"\\e050\";\n}\n.glyphicon-text-width:before {\n content: \"\\e051\";\n}\n.glyphicon-align-left:before {\n content: \"\\e052\";\n}\n.glyphicon-align-center:before {\n content: \"\\e053\";\n}\n.glyphicon-align-right:before {\n content: \"\\e054\";\n}\n.glyphicon-align-justify:before {\n content: \"\\e055\";\n}\n.glyphicon-list:before {\n content: \"\\e056\";\n}\n.glyphicon-indent-left:before {\n content: \"\\e057\";\n}\n.glyphicon-indent-right:before {\n content: \"\\e058\";\n}\n.glyphicon-facetime-video:before {\n content: \"\\e059\";\n}\n.glyphicon-picture:before {\n content: \"\\e060\";\n}\n.glyphicon-map-marker:before {\n content: \"\\e062\";\n}\n.glyphicon-adjust:before {\n content: \"\\e063\";\n}\n.glyphicon-tint:before {\n content: \"\\e064\";\n}\n.glyphicon-edit:before {\n content: \"\\e065\";\n}\n.glyphicon-share:before {\n content: \"\\e066\";\n}\n.glyphicon-check:before {\n content: \"\\e067\";\n}\n.glyphicon-move:before {\n content: \"\\e068\";\n}\n.glyphicon-step-backward:before {\n content: \"\\e069\";\n}\n.glyphicon-fast-backward:before {\n content: \"\\e070\";\n}\n.glyphicon-backward:before {\n content: \"\\e071\";\n}\n.glyphicon-play:before {\n content: \"\\e072\";\n}\n.glyphicon-pause:before {\n content: \"\\e073\";\n}\n.glyphicon-stop:before {\n content: \"\\e074\";\n}\n.glyphicon-forward:before {\n content: \"\\e075\";\n}\n.glyphicon-fast-forward:before {\n content: \"\\e076\";\n}\n.glyphicon-step-forward:before {\n content: \"\\e077\";\n}\n.glyphicon-eject:before {\n content: \"\\e078\";\n}\n.glyphicon-chevron-left:before {\n content: \"\\e079\";\n}\n.glyphicon-chevron-right:before {\n content: \"\\e080\";\n}\n.glyphicon-plus-sign:before {\n content: \"\\e081\";\n}\n.glyphicon-minus-sign:before {\n content: \"\\e082\";\n}\n.glyphicon-remove-sign:before {\n content: \"\\e083\";\n}\n.glyphicon-ok-sign:before {\n content: \"\\e084\";\n}\n.glyphicon-question-sign:before {\n content: \"\\e085\";\n}\n.glyphicon-info-sign:before {\n content: \"\\e086\";\n}\n.glyphicon-screenshot:before {\n content: \"\\e087\";\n}\n.glyphicon-remove-circle:before {\n content: \"\\e088\";\n}\n.glyphicon-ok-circle:before {\n content: \"\\e089\";\n}\n.glyphicon-ban-circle:before {\n content: \"\\e090\";\n}\n.glyphicon-arrow-left:before {\n content: \"\\e091\";\n}\n.glyphicon-arrow-right:before {\n content: \"\\e092\";\n}\n.glyphicon-arrow-up:before {\n content: \"\\e093\";\n}\n.glyphicon-arrow-down:before {\n content: \"\\e094\";\n}\n.glyphicon-share-alt:before {\n content: \"\\e095\";\n}\n.glyphicon-resize-full:before {\n content: \"\\e096\";\n}\n.glyphicon-resize-small:before {\n content: \"\\e097\";\n}\n.glyphicon-exclamation-sign:before {\n content: \"\\e101\";\n}\n.glyphicon-gift:before {\n content: \"\\e102\";\n}\n.glyphicon-leaf:before {\n content: \"\\e103\";\n}\n.glyphicon-fire:before {\n content: \"\\e104\";\n}\n.glyphicon-eye-open:before {\n content: \"\\e105\";\n}\n.glyphicon-eye-close:before {\n content: \"\\e106\";\n}\n.glyphicon-warning-sign:before {\n content: \"\\e107\";\n}\n.glyphicon-plane:before {\n content: \"\\e108\";\n}\n.glyphicon-calendar:before {\n content: \"\\e109\";\n}\n.glyphicon-random:before {\n content: \"\\e110\";\n}\n.glyphicon-comment:before {\n content: \"\\e111\";\n}\n.glyphicon-magnet:before {\n content: \"\\e112\";\n}\n.glyphicon-chevron-up:before {\n content: \"\\e113\";\n}\n.glyphicon-chevron-down:before {\n content: \"\\e114\";\n}\n.glyphicon-retweet:before {\n content: \"\\e115\";\n}\n.glyphicon-shopping-cart:before {\n content: \"\\e116\";\n}\n.glyphicon-folder-close:before {\n content: \"\\e117\";\n}\n.glyphicon-folder-open:before {\n content: \"\\e118\";\n}\n.glyphicon-resize-vertical:before {\n content: \"\\e119\";\n}\n.glyphicon-resize-horizontal:before {\n content: \"\\e120\";\n}\n.glyphicon-hdd:before {\n content: \"\\e121\";\n}\n.glyphicon-bullhorn:before {\n content: \"\\e122\";\n}\n.glyphicon-bell:before {\n content: \"\\e123\";\n}\n.glyphicon-certificate:before {\n content: \"\\e124\";\n}\n.glyphicon-thumbs-up:before {\n content: \"\\e125\";\n}\n.glyphicon-thumbs-down:before {\n content: \"\\e126\";\n}\n.glyphicon-hand-right:before {\n content: \"\\e127\";\n}\n.glyphicon-hand-left:before {\n content: \"\\e128\";\n}\n.glyphicon-hand-up:before {\n content: \"\\e129\";\n}\n.glyphicon-hand-down:before {\n content: \"\\e130\";\n}\n.glyphicon-circle-arrow-right:before {\n content: \"\\e131\";\n}\n.glyphicon-circle-arrow-left:before {\n content: \"\\e132\";\n}\n.glyphicon-circle-arrow-up:before {\n content: \"\\e133\";\n}\n.glyphicon-circle-arrow-down:before {\n content: \"\\e134\";\n}\n.glyphicon-globe:before {\n content: \"\\e135\";\n}\n.glyphicon-wrench:before {\n content: \"\\e136\";\n}\n.glyphicon-tasks:before {\n content: \"\\e137\";\n}\n.glyphicon-filter:before {\n content: \"\\e138\";\n}\n.glyphicon-briefcase:before {\n content: \"\\e139\";\n}\n.glyphicon-fullscreen:before {\n content: \"\\e140\";\n}\n.glyphicon-dashboard:before {\n content: \"\\e141\";\n}\n.glyphicon-paperclip:before {\n content: \"\\e142\";\n}\n.glyphicon-heart-empty:before {\n content: \"\\e143\";\n}\n.glyphicon-link:before {\n content: \"\\e144\";\n}\n.glyphicon-phone:before {\n content: \"\\e145\";\n}\n.glyphicon-pushpin:before {\n content: \"\\e146\";\n}\n.glyphicon-usd:before {\n content: \"\\e148\";\n}\n.glyphicon-gbp:before {\n content: \"\\e149\";\n}\n.glyphicon-sort:before {\n content: \"\\e150\";\n}\n.glyphicon-sort-by-alphabet:before {\n content: \"\\e151\";\n}\n.glyphicon-sort-by-alphabet-alt:before {\n content: \"\\e152\";\n}\n.glyphicon-sort-by-order:before {\n content: \"\\e153\";\n}\n.glyphicon-sort-by-order-alt:before {\n content: \"\\e154\";\n}\n.glyphicon-sort-by-attributes:before {\n content: \"\\e155\";\n}\n.glyphicon-sort-by-attributes-alt:before {\n content: \"\\e156\";\n}\n.glyphicon-unchecked:before {\n content: \"\\e157\";\n}\n.glyphicon-expand:before {\n content: \"\\e158\";\n}\n.glyphicon-collapse-down:before {\n content: \"\\e159\";\n}\n.glyphicon-collapse-up:before {\n content: \"\\e160\";\n}\n.glyphicon-log-in:before {\n content: \"\\e161\";\n}\n.glyphicon-flash:before {\n content: \"\\e162\";\n}\n.glyphicon-log-out:before {\n content: \"\\e163\";\n}\n.glyphicon-new-window:before {\n content: \"\\e164\";\n}\n.glyphicon-record:before {\n content: \"\\e165\";\n}\n.glyphicon-save:before {\n content: \"\\e166\";\n}\n.glyphicon-open:before {\n content: \"\\e167\";\n}\n.glyphicon-saved:before {\n content: \"\\e168\";\n}\n.glyphicon-import:before {\n content: \"\\e169\";\n}\n.glyphicon-export:before {\n content: \"\\e170\";\n}\n.glyphicon-send:before {\n content: \"\\e171\";\n}\n.glyphicon-floppy-disk:before {\n content: \"\\e172\";\n}\n.glyphicon-floppy-saved:before {\n content: \"\\e173\";\n}\n.glyphicon-floppy-remove:before {\n content: \"\\e174\";\n}\n.glyphicon-floppy-save:before {\n content: \"\\e175\";\n}\n.glyphicon-floppy-open:before {\n content: \"\\e176\";\n}\n.glyphicon-credit-card:before {\n content: \"\\e177\";\n}\n.glyphicon-transfer:before {\n content: \"\\e178\";\n}\n.glyphicon-cutlery:before {\n content: \"\\e179\";\n}\n.glyphicon-header:before {\n content: \"\\e180\";\n}\n.glyphicon-compressed:before {\n content: \"\\e181\";\n}\n.glyphicon-earphone:before {\n content: \"\\e182\";\n}\n.glyphicon-phone-alt:before {\n content: \"\\e183\";\n}\n.glyphicon-tower:before {\n content: \"\\e184\";\n}\n.glyphicon-stats:before {\n content: \"\\e185\";\n}\n.glyphicon-sd-video:before {\n content: \"\\e186\";\n}\n.glyphicon-hd-video:before {\n content: \"\\e187\";\n}\n.glyphicon-subtitles:before {\n content: \"\\e188\";\n}\n.glyphicon-sound-stereo:before {\n content: \"\\e189\";\n}\n.glyphicon-sound-dolby:before {\n content: \"\\e190\";\n}\n.glyphicon-sound-5-1:before {\n content: \"\\e191\";\n}\n.glyphicon-sound-6-1:before {\n content: \"\\e192\";\n}\n.glyphicon-sound-7-1:before {\n content: \"\\e193\";\n}\n.glyphicon-copyright-mark:before {\n content: \"\\e194\";\n}\n.glyphicon-registration-mark:before {\n content: \"\\e195\";\n}\n.glyphicon-cloud-download:before {\n content: \"\\e197\";\n}\n.glyphicon-cloud-upload:before {\n content: \"\\e198\";\n}\n.glyphicon-tree-conifer:before {\n content: \"\\e199\";\n}\n.glyphicon-tree-deciduous:before {\n content: \"\\e200\";\n}\n.glyphicon-cd:before {\n content: \"\\e201\";\n}\n.glyphicon-save-file:before {\n content: \"\\e202\";\n}\n.glyphicon-open-file:before {\n content: \"\\e203\";\n}\n.glyphicon-level-up:before {\n content: \"\\e204\";\n}\n.glyphicon-copy:before {\n content: \"\\e205\";\n}\n.glyphicon-paste:before {\n content: \"\\e206\";\n}\n.glyphicon-alert:before {\n content: \"\\e209\";\n}\n.glyphicon-equalizer:before {\n content: \"\\e210\";\n}\n.glyphicon-king:before {\n content: \"\\e211\";\n}\n.glyphicon-queen:before {\n content: \"\\e212\";\n}\n.glyphicon-pawn:before {\n content: \"\\e213\";\n}\n.glyphicon-bishop:before {\n content: \"\\e214\";\n}\n.glyphicon-knight:before {\n content: \"\\e215\";\n}\n.glyphicon-baby-formula:before {\n content: \"\\e216\";\n}\n.glyphicon-tent:before {\n content: \"\\26fa\";\n}\n.glyphicon-blackboard:before {\n content: \"\\e218\";\n}\n.glyphicon-bed:before {\n content: \"\\e219\";\n}\n.glyphicon-apple:before {\n content: \"\\f8ff\";\n}\n.glyphicon-erase:before {\n content: \"\\e221\";\n}\n.glyphicon-hourglass:before {\n content: \"\\231b\";\n}\n.glyphicon-lamp:before {\n content: \"\\e223\";\n}\n.glyphicon-duplicate:before {\n content: \"\\e224\";\n}\n.glyphicon-piggy-bank:before {\n content: \"\\e225\";\n}\n.glyphicon-scissors:before {\n content: \"\\e226\";\n}\n.glyphicon-bitcoin:before {\n content: \"\\e227\";\n}\n.glyphicon-btc:before {\n content: \"\\e227\";\n}\n.glyphicon-xbt:before {\n content: \"\\e227\";\n}\n.glyphicon-yen:before {\n content: \"\\00a5\";\n}\n.glyphicon-jpy:before {\n content: \"\\00a5\";\n}\n.glyphicon-ruble:before {\n content: \"\\20bd\";\n}\n.glyphicon-rub:before {\n content: \"\\20bd\";\n}\n.glyphicon-scale:before {\n content: \"\\e230\";\n}\n.glyphicon-ice-lolly:before {\n content: \"\\e231\";\n}\n.glyphicon-ice-lolly-tasted:before {\n content: \"\\e232\";\n}\n.glyphicon-education:before {\n content: \"\\e233\";\n}\n.glyphicon-option-horizontal:before {\n content: \"\\e234\";\n}\n.glyphicon-option-vertical:before {\n content: \"\\e235\";\n}\n.glyphicon-menu-hamburger:before {\n content: \"\\e236\";\n}\n.glyphicon-modal-window:before {\n content: \"\\e237\";\n}\n.glyphicon-oil:before {\n content: \"\\e238\";\n}\n.glyphicon-grain:before {\n content: \"\\e239\";\n}\n.glyphicon-sunglasses:before {\n content: \"\\e240\";\n}\n.glyphicon-text-size:before {\n content: \"\\e241\";\n}\n.glyphicon-text-color:before {\n content: \"\\e242\";\n}\n.glyphicon-text-background:before {\n content: \"\\e243\";\n}\n.glyphicon-object-align-top:before {\n content: \"\\e244\";\n}\n.glyphicon-object-align-bottom:before {\n content: \"\\e245\";\n}\n.glyphicon-object-align-horizontal:before {\n content: \"\\e246\";\n}\n.glyphicon-object-align-left:before {\n content: \"\\e247\";\n}\n.glyphicon-object-align-vertical:before {\n content: \"\\e248\";\n}\n.glyphicon-object-align-right:before {\n content: \"\\e249\";\n}\n.glyphicon-triangle-right:before {\n content: \"\\e250\";\n}\n.glyphicon-triangle-left:before {\n content: \"\\e251\";\n}\n.glyphicon-triangle-bottom:before {\n content: \"\\e252\";\n}\n.glyphicon-triangle-top:before {\n content: \"\\e253\";\n}\n.glyphicon-console:before {\n content: \"\\e254\";\n}\n.glyphicon-superscript:before {\n content: \"\\e255\";\n}\n.glyphicon-subscript:before {\n content: \"\\e256\";\n}\n.glyphicon-menu-left:before {\n content: \"\\e257\";\n}\n.glyphicon-menu-right:before {\n content: \"\\e258\";\n}\n.glyphicon-menu-down:before {\n content: \"\\e259\";\n}\n.glyphicon-menu-up:before {\n content: \"\\e260\";\n}\n* {\n -webkit-box-sizing: border-box;\n -moz-box-sizing: border-box;\n box-sizing: border-box;\n}\n*:before,\n*:after {\n -webkit-box-sizing: border-box;\n -moz-box-sizing: border-box;\n box-sizing: border-box;\n}\nhtml {\n font-size: 10px;\n -webkit-tap-highlight-color: rgba(0, 0, 0, 0);\n}\nbody {\n font-family: \"Helvetica Neue\", Helvetica, Arial, sans-serif;\n font-size: 14px;\n line-height: 1.42857143;\n color: #333333;\n background-color: #fff;\n}\ninput,\nbutton,\nselect,\ntextarea {\n font-family: inherit;\n font-size: inherit;\n line-height: inherit;\n}\na {\n color: #337ab7;\n text-decoration: none;\n}\na:hover,\na:focus {\n color: #23527c;\n text-decoration: underline;\n}\na:focus {\n outline: 5px auto -webkit-focus-ring-color;\n outline-offset: -2px;\n}\nfigure {\n margin: 0;\n}\nimg {\n vertical-align: middle;\n}\n.img-responsive,\n.thumbnail > img,\n.thumbnail a > img,\n.carousel-inner > .item > img,\n.carousel-inner > .item > a > img {\n display: block;\n max-width: 100%;\n height: auto;\n}\n.img-rounded {\n border-radius: 6px;\n}\n.img-thumbnail {\n padding: 4px;\n line-height: 1.42857143;\n background-color: #fff;\n border: 1px solid #ddd;\n border-radius: 4px;\n -webkit-transition: all 0.2s ease-in-out;\n -o-transition: all 0.2s ease-in-out;\n transition: all 0.2s ease-in-out;\n display: inline-block;\n max-width: 100%;\n height: auto;\n}\n.img-circle {\n border-radius: 50%;\n}\nhr {\n margin-top: 20px;\n margin-bottom: 20px;\n border: 0;\n border-top: 1px solid #eeeeee;\n}\n.sr-only {\n position: absolute;\n width: 1px;\n height: 1px;\n margin: -1px;\n padding: 0;\n overflow: hidden;\n clip: rect(0, 0, 0, 0);\n border: 0;\n}\n.sr-only-focusable:active,\n.sr-only-focusable:focus {\n position: static;\n width: auto;\n height: auto;\n margin: 0;\n overflow: visible;\n clip: auto;\n}\n[role=\"button\"] {\n cursor: pointer;\n}\nh1,\nh2,\nh3,\nh4,\nh5,\nh6,\n.h1,\n.h2,\n.h3,\n.h4,\n.h5,\n.h6 {\n font-family: inherit;\n font-weight: 500;\n line-height: 1.1;\n color: inherit;\n}\nh1 small,\nh2 small,\nh3 small,\nh4 small,\nh5 small,\nh6 small,\n.h1 small,\n.h2 small,\n.h3 small,\n.h4 small,\n.h5 small,\n.h6 small,\nh1 .small,\nh2 .small,\nh3 .small,\nh4 .small,\nh5 .small,\nh6 .small,\n.h1 .small,\n.h2 .small,\n.h3 .small,\n.h4 .small,\n.h5 .small,\n.h6 .small {\n font-weight: normal;\n line-height: 1;\n color: #777777;\n}\nh1,\n.h1,\nh2,\n.h2,\nh3,\n.h3 {\n margin-top: 20px;\n margin-bottom: 10px;\n}\nh1 small,\n.h1 small,\nh2 small,\n.h2 small,\nh3 small,\n.h3 small,\nh1 .small,\n.h1 .small,\nh2 .small,\n.h2 .small,\nh3 .small,\n.h3 .small {\n font-size: 65%;\n}\nh4,\n.h4,\nh5,\n.h5,\nh6,\n.h6 {\n margin-top: 10px;\n margin-bottom: 10px;\n}\nh4 small,\n.h4 small,\nh5 small,\n.h5 small,\nh6 small,\n.h6 small,\nh4 .small,\n.h4 .small,\nh5 .small,\n.h5 .small,\nh6 .small,\n.h6 .small {\n font-size: 75%;\n}\nh1,\n.h1 {\n font-size: 36px;\n}\nh2,\n.h2 {\n font-size: 30px;\n}\nh3,\n.h3 {\n font-size: 24px;\n}\nh4,\n.h4 {\n font-size: 18px;\n}\nh5,\n.h5 {\n font-size: 14px;\n}\nh6,\n.h6 {\n font-size: 12px;\n}\np {\n margin: 0 0 10px;\n}\n.lead {\n margin-bottom: 20px;\n font-size: 16px;\n font-weight: 300;\n line-height: 1.4;\n}\n@media (min-width: 768px) {\n .lead {\n font-size: 21px;\n }\n}\nsmall,\n.small {\n font-size: 85%;\n}\nmark,\n.mark {\n background-color: #fcf8e3;\n padding: .2em;\n}\n.text-left {\n text-align: left;\n}\n.text-right {\n text-align: right;\n}\n.text-center {\n text-align: center;\n}\n.text-justify {\n text-align: justify;\n}\n.text-nowrap {\n white-space: nowrap;\n}\n.text-lowercase {\n text-transform: lowercase;\n}\n.text-uppercase {\n text-transform: uppercase;\n}\n.text-capitalize {\n text-transform: capitalize;\n}\n.text-muted {\n color: #777777;\n}\n.text-primary {\n color: #337ab7;\n}\na.text-primary:hover,\na.text-primary:focus {\n color: #286090;\n}\n.text-success {\n color: #3c763d;\n}\na.text-success:hover,\na.text-success:focus {\n color: #2b542c;\n}\n.text-info {\n color: #31708f;\n}\na.text-info:hover,\na.text-info:focus {\n color: #245269;\n}\n.text-warning {\n color: #8a6d3b;\n}\na.text-warning:hover,\na.text-warning:focus {\n color: #66512c;\n}\n.text-danger {\n color: #a94442;\n}\na.text-danger:hover,\na.text-danger:focus {\n color: #843534;\n}\n.bg-primary {\n color: #fff;\n background-color: #337ab7;\n}\na.bg-primary:hover,\na.bg-primary:focus {\n background-color: #286090;\n}\n.bg-success {\n background-color: #dff0d8;\n}\na.bg-success:hover,\na.bg-success:focus {\n background-color: #c1e2b3;\n}\n.bg-info {\n background-color: #d9edf7;\n}\na.bg-info:hover,\na.bg-info:focus {\n background-color: #afd9ee;\n}\n.bg-warning {\n background-color: #fcf8e3;\n}\na.bg-warning:hover,\na.bg-warning:focus {\n background-color: #f7ecb5;\n}\n.bg-danger {\n background-color: #f2dede;\n}\na.bg-danger:hover,\na.bg-danger:focus {\n background-color: #e4b9b9;\n}\n.page-header {\n padding-bottom: 9px;\n margin: 40px 0 20px;\n border-bottom: 1px solid #eeeeee;\n}\nul,\nol {\n margin-top: 0;\n margin-bottom: 10px;\n}\nul ul,\nol ul,\nul ol,\nol ol {\n margin-bottom: 0;\n}\n.list-unstyled {\n padding-left: 0;\n list-style: none;\n}\n.list-inline {\n padding-left: 0;\n list-style: none;\n margin-left: -5px;\n}\n.list-inline > li {\n display: inline-block;\n padding-left: 5px;\n padding-right: 5px;\n}\ndl {\n margin-top: 0;\n margin-bottom: 20px;\n}\ndt,\ndd {\n line-height: 1.42857143;\n}\ndt {\n font-weight: bold;\n}\ndd {\n margin-left: 0;\n}\n@media (min-width: 768px) {\n .dl-horizontal dt {\n float: left;\n width: 160px;\n clear: left;\n text-align: right;\n overflow: hidden;\n text-overflow: ellipsis;\n white-space: nowrap;\n }\n .dl-horizontal dd {\n margin-left: 180px;\n }\n}\nabbr[title],\nabbr[data-original-title] {\n cursor: help;\n border-bottom: 1px dotted #777777;\n}\n.initialism {\n font-size: 90%;\n text-transform: uppercase;\n}\nblockquote {\n padding: 10px 20px;\n margin: 0 0 20px;\n font-size: 17.5px;\n border-left: 5px solid #eeeeee;\n}\nblockquote p:last-child,\nblockquote ul:last-child,\nblockquote ol:last-child {\n margin-bottom: 0;\n}\nblockquote footer,\nblockquote small,\nblockquote .small {\n display: block;\n font-size: 80%;\n line-height: 1.42857143;\n color: #777777;\n}\nblockquote footer:before,\nblockquote small:before,\nblockquote .small:before {\n content: '\\2014 \\00A0';\n}\n.blockquote-reverse,\nblockquote.pull-right {\n padding-right: 15px;\n padding-left: 0;\n border-right: 5px solid #eeeeee;\n border-left: 0;\n text-align: right;\n}\n.blockquote-reverse footer:before,\nblockquote.pull-right footer:before,\n.blockquote-reverse small:before,\nblockquote.pull-right small:before,\n.blockquote-reverse .small:before,\nblockquote.pull-right .small:before {\n content: '';\n}\n.blockquote-reverse footer:after,\nblockquote.pull-right footer:after,\n.blockquote-reverse small:after,\nblockquote.pull-right small:after,\n.blockquote-reverse .small:after,\nblockquote.pull-right .small:after {\n content: '\\00A0 \\2014';\n}\naddress {\n margin-bottom: 20px;\n font-style: normal;\n line-height: 1.42857143;\n}\ncode,\nkbd,\npre,\nsamp {\n font-family: Menlo, Monaco, Consolas, \"Courier New\", monospace;\n}\ncode {\n padding: 2px 4px;\n font-size: 90%;\n color: #c7254e;\n background-color: #f9f2f4;\n border-radius: 4px;\n}\nkbd {\n padding: 2px 4px;\n font-size: 90%;\n color: #fff;\n background-color: #333;\n border-radius: 3px;\n box-shadow: inset 0 -1px 0 rgba(0, 0, 0, 0.25);\n}\nkbd kbd {\n padding: 0;\n font-size: 100%;\n font-weight: bold;\n box-shadow: none;\n}\npre {\n display: block;\n padding: 9.5px;\n margin: 0 0 10px;\n font-size: 13px;\n line-height: 1.42857143;\n word-break: break-all;\n word-wrap: break-word;\n color: #333333;\n background-color: #f5f5f5;\n border: 1px solid #ccc;\n border-radius: 4px;\n}\npre code {\n padding: 0;\n font-size: inherit;\n color: inherit;\n white-space: pre-wrap;\n background-color: transparent;\n border-radius: 0;\n}\n.pre-scrollable {\n max-height: 340px;\n overflow-y: scroll;\n}\n.container {\n margin-right: auto;\n margin-left: auto;\n padding-left: 15px;\n padding-right: 15px;\n}\n@media (min-width: 768px) {\n .container {\n width: 750px;\n }\n}\n@media (min-width: 992px) {\n .container {\n width: 970px;\n }\n}\n@media (min-width: 1200px) {\n .container {\n width: 1170px;\n }\n}\n.container-fluid {\n margin-right: auto;\n margin-left: auto;\n padding-left: 15px;\n padding-right: 15px;\n}\n.row {\n margin-left: -15px;\n margin-right: -15px;\n}\n.col-xs-1, .col-sm-1, .col-md-1, .col-lg-1, .col-xs-2, .col-sm-2, .col-md-2, .col-lg-2, .col-xs-3, .col-sm-3, .col-md-3, .col-lg-3, .col-xs-4, .col-sm-4, .col-md-4, .col-lg-4, .col-xs-5, .col-sm-5, .col-md-5, .col-lg-5, .col-xs-6, .col-sm-6, .col-md-6, .col-lg-6, .col-xs-7, .col-sm-7, .col-md-7, .col-lg-7, .col-xs-8, .col-sm-8, .col-md-8, .col-lg-8, .col-xs-9, .col-sm-9, .col-md-9, .col-lg-9, .col-xs-10, .col-sm-10, .col-md-10, .col-lg-10, .col-xs-11, .col-sm-11, .col-md-11, .col-lg-11, .col-xs-12, .col-sm-12, .col-md-12, .col-lg-12 {\n position: relative;\n min-height: 1px;\n padding-left: 15px;\n padding-right: 15px;\n}\n.col-xs-1, .col-xs-2, .col-xs-3, .col-xs-4, .col-xs-5, .col-xs-6, .col-xs-7, .col-xs-8, .col-xs-9, .col-xs-10, .col-xs-11, .col-xs-12 {\n float: left;\n}\n.col-xs-12 {\n width: 100%;\n}\n.col-xs-11 {\n width: 91.66666667%;\n}\n.col-xs-10 {\n width: 83.33333333%;\n}\n.col-xs-9 {\n width: 75%;\n}\n.col-xs-8 {\n width: 66.66666667%;\n}\n.col-xs-7 {\n width: 58.33333333%;\n}\n.col-xs-6 {\n width: 50%;\n}\n.col-xs-5 {\n width: 41.66666667%;\n}\n.col-xs-4 {\n width: 33.33333333%;\n}\n.col-xs-3 {\n width: 25%;\n}\n.col-xs-2 {\n width: 16.66666667%;\n}\n.col-xs-1 {\n width: 8.33333333%;\n}\n.col-xs-pull-12 {\n right: 100%;\n}\n.col-xs-pull-11 {\n right: 91.66666667%;\n}\n.col-xs-pull-10 {\n right: 83.33333333%;\n}\n.col-xs-pull-9 {\n right: 75%;\n}\n.col-xs-pull-8 {\n right: 66.66666667%;\n}\n.col-xs-pull-7 {\n right: 58.33333333%;\n}\n.col-xs-pull-6 {\n right: 50%;\n}\n.col-xs-pull-5 {\n right: 41.66666667%;\n}\n.col-xs-pull-4 {\n right: 33.33333333%;\n}\n.col-xs-pull-3 {\n right: 25%;\n}\n.col-xs-pull-2 {\n right: 16.66666667%;\n}\n.col-xs-pull-1 {\n right: 8.33333333%;\n}\n.col-xs-pull-0 {\n right: auto;\n}\n.col-xs-push-12 {\n left: 100%;\n}\n.col-xs-push-11 {\n left: 91.66666667%;\n}\n.col-xs-push-10 {\n left: 83.33333333%;\n}\n.col-xs-push-9 {\n left: 75%;\n}\n.col-xs-push-8 {\n left: 66.66666667%;\n}\n.col-xs-push-7 {\n left: 58.33333333%;\n}\n.col-xs-push-6 {\n left: 50%;\n}\n.col-xs-push-5 {\n left: 41.66666667%;\n}\n.col-xs-push-4 {\n left: 33.33333333%;\n}\n.col-xs-push-3 {\n left: 25%;\n}\n.col-xs-push-2 {\n left: 16.66666667%;\n}\n.col-xs-push-1 {\n left: 8.33333333%;\n}\n.col-xs-push-0 {\n left: auto;\n}\n.col-xs-offset-12 {\n margin-left: 100%;\n}\n.col-xs-offset-11 {\n margin-left: 91.66666667%;\n}\n.col-xs-offset-10 {\n margin-left: 83.33333333%;\n}\n.col-xs-offset-9 {\n margin-left: 75%;\n}\n.col-xs-offset-8 {\n margin-left: 66.66666667%;\n}\n.col-xs-offset-7 {\n margin-left: 58.33333333%;\n}\n.col-xs-offset-6 {\n margin-left: 50%;\n}\n.col-xs-offset-5 {\n margin-left: 41.66666667%;\n}\n.col-xs-offset-4 {\n margin-left: 33.33333333%;\n}\n.col-xs-offset-3 {\n margin-left: 25%;\n}\n.col-xs-offset-2 {\n margin-left: 16.66666667%;\n}\n.col-xs-offset-1 {\n margin-left: 8.33333333%;\n}\n.col-xs-offset-0 {\n margin-left: 0%;\n}\n@media (min-width: 768px) {\n .col-sm-1, .col-sm-2, .col-sm-3, .col-sm-4, .col-sm-5, .col-sm-6, .col-sm-7, .col-sm-8, .col-sm-9, .col-sm-10, .col-sm-11, .col-sm-12 {\n float: left;\n }\n .col-sm-12 {\n width: 100%;\n }\n .col-sm-11 {\n width: 91.66666667%;\n }\n .col-sm-10 {\n width: 83.33333333%;\n }\n .col-sm-9 {\n width: 75%;\n }\n .col-sm-8 {\n width: 66.66666667%;\n }\n .col-sm-7 {\n width: 58.33333333%;\n }\n .col-sm-6 {\n width: 50%;\n }\n .col-sm-5 {\n width: 41.66666667%;\n }\n .col-sm-4 {\n width: 33.33333333%;\n }\n .col-sm-3 {\n width: 25%;\n }\n .col-sm-2 {\n width: 16.66666667%;\n }\n .col-sm-1 {\n width: 8.33333333%;\n }\n .col-sm-pull-12 {\n right: 100%;\n }\n .col-sm-pull-11 {\n right: 91.66666667%;\n }\n .col-sm-pull-10 {\n right: 83.33333333%;\n }\n .col-sm-pull-9 {\n right: 75%;\n }\n .col-sm-pull-8 {\n right: 66.66666667%;\n }\n .col-sm-pull-7 {\n right: 58.33333333%;\n }\n .col-sm-pull-6 {\n right: 50%;\n }\n .col-sm-pull-5 {\n right: 41.66666667%;\n }\n .col-sm-pull-4 {\n right: 33.33333333%;\n }\n .col-sm-pull-3 {\n right: 25%;\n }\n .col-sm-pull-2 {\n right: 16.66666667%;\n }\n .col-sm-pull-1 {\n right: 8.33333333%;\n }\n .col-sm-pull-0 {\n right: auto;\n }\n .col-sm-push-12 {\n left: 100%;\n }\n .col-sm-push-11 {\n left: 91.66666667%;\n }\n .col-sm-push-10 {\n left: 83.33333333%;\n }\n .col-sm-push-9 {\n left: 75%;\n }\n .col-sm-push-8 {\n left: 66.66666667%;\n }\n .col-sm-push-7 {\n left: 58.33333333%;\n }\n .col-sm-push-6 {\n left: 50%;\n }\n .col-sm-push-5 {\n left: 41.66666667%;\n }\n .col-sm-push-4 {\n left: 33.33333333%;\n }\n .col-sm-push-3 {\n left: 25%;\n }\n .col-sm-push-2 {\n left: 16.66666667%;\n }\n .col-sm-push-1 {\n left: 8.33333333%;\n }\n .col-sm-push-0 {\n left: auto;\n }\n .col-sm-offset-12 {\n margin-left: 100%;\n }\n .col-sm-offset-11 {\n margin-left: 91.66666667%;\n }\n .col-sm-offset-10 {\n margin-left: 83.33333333%;\n }\n .col-sm-offset-9 {\n margin-left: 75%;\n }\n .col-sm-offset-8 {\n margin-left: 66.66666667%;\n }\n .col-sm-offset-7 {\n margin-left: 58.33333333%;\n }\n .col-sm-offset-6 {\n margin-left: 50%;\n }\n .col-sm-offset-5 {\n margin-left: 41.66666667%;\n }\n .col-sm-offset-4 {\n margin-left: 33.33333333%;\n }\n .col-sm-offset-3 {\n margin-left: 25%;\n }\n .col-sm-offset-2 {\n margin-left: 16.66666667%;\n }\n .col-sm-offset-1 {\n margin-left: 8.33333333%;\n }\n .col-sm-offset-0 {\n margin-left: 0%;\n }\n}\n@media (min-width: 992px) {\n .col-md-1, .col-md-2, .col-md-3, .col-md-4, .col-md-5, .col-md-6, .col-md-7, .col-md-8, .col-md-9, .col-md-10, .col-md-11, .col-md-12 {\n float: left;\n }\n .col-md-12 {\n width: 100%;\n }\n .col-md-11 {\n width: 91.66666667%;\n }\n .col-md-10 {\n width: 83.33333333%;\n }\n .col-md-9 {\n width: 75%;\n }\n .col-md-8 {\n width: 66.66666667%;\n }\n .col-md-7 {\n width: 58.33333333%;\n }\n .col-md-6 {\n width: 50%;\n }\n .col-md-5 {\n width: 41.66666667%;\n }\n .col-md-4 {\n width: 33.33333333%;\n }\n .col-md-3 {\n width: 25%;\n }\n .col-md-2 {\n width: 16.66666667%;\n }\n .col-md-1 {\n width: 8.33333333%;\n }\n .col-md-pull-12 {\n right: 100%;\n }\n .col-md-pull-11 {\n right: 91.66666667%;\n }\n .col-md-pull-10 {\n right: 83.33333333%;\n }\n .col-md-pull-9 {\n right: 75%;\n }\n .col-md-pull-8 {\n right: 66.66666667%;\n }\n .col-md-pull-7 {\n right: 58.33333333%;\n }\n .col-md-pull-6 {\n right: 50%;\n }\n .col-md-pull-5 {\n right: 41.66666667%;\n }\n .col-md-pull-4 {\n right: 33.33333333%;\n }\n .col-md-pull-3 {\n right: 25%;\n }\n .col-md-pull-2 {\n right: 16.66666667%;\n }\n .col-md-pull-1 {\n right: 8.33333333%;\n }\n .col-md-pull-0 {\n right: auto;\n }\n .col-md-push-12 {\n left: 100%;\n }\n .col-md-push-11 {\n left: 91.66666667%;\n }\n .col-md-push-10 {\n left: 83.33333333%;\n }\n .col-md-push-9 {\n left: 75%;\n }\n .col-md-push-8 {\n left: 66.66666667%;\n }\n .col-md-push-7 {\n left: 58.33333333%;\n }\n .col-md-push-6 {\n left: 50%;\n }\n .col-md-push-5 {\n left: 41.66666667%;\n }\n .col-md-push-4 {\n left: 33.33333333%;\n }\n .col-md-push-3 {\n left: 25%;\n }\n .col-md-push-2 {\n left: 16.66666667%;\n }\n .col-md-push-1 {\n left: 8.33333333%;\n }\n .col-md-push-0 {\n left: auto;\n }\n .col-md-offset-12 {\n margin-left: 100%;\n }\n .col-md-offset-11 {\n margin-left: 91.66666667%;\n }\n .col-md-offset-10 {\n margin-left: 83.33333333%;\n }\n .col-md-offset-9 {\n margin-left: 75%;\n }\n .col-md-offset-8 {\n margin-left: 66.66666667%;\n }\n .col-md-offset-7 {\n margin-left: 58.33333333%;\n }\n .col-md-offset-6 {\n margin-left: 50%;\n }\n .col-md-offset-5 {\n margin-left: 41.66666667%;\n }\n .col-md-offset-4 {\n margin-left: 33.33333333%;\n }\n .col-md-offset-3 {\n margin-left: 25%;\n }\n .col-md-offset-2 {\n margin-left: 16.66666667%;\n }\n .col-md-offset-1 {\n margin-left: 8.33333333%;\n }\n .col-md-offset-0 {\n margin-left: 0%;\n }\n}\n@media (min-width: 1200px) {\n .col-lg-1, .col-lg-2, .col-lg-3, .col-lg-4, .col-lg-5, .col-lg-6, .col-lg-7, .col-lg-8, .col-lg-9, .col-lg-10, .col-lg-11, .col-lg-12 {\n float: left;\n }\n .col-lg-12 {\n width: 100%;\n }\n .col-lg-11 {\n width: 91.66666667%;\n }\n .col-lg-10 {\n width: 83.33333333%;\n }\n .col-lg-9 {\n width: 75%;\n }\n .col-lg-8 {\n width: 66.66666667%;\n }\n .col-lg-7 {\n width: 58.33333333%;\n }\n .col-lg-6 {\n width: 50%;\n }\n .col-lg-5 {\n width: 41.66666667%;\n }\n .col-lg-4 {\n width: 33.33333333%;\n }\n .col-lg-3 {\n width: 25%;\n }\n .col-lg-2 {\n width: 16.66666667%;\n }\n .col-lg-1 {\n width: 8.33333333%;\n }\n .col-lg-pull-12 {\n right: 100%;\n }\n .col-lg-pull-11 {\n right: 91.66666667%;\n }\n .col-lg-pull-10 {\n right: 83.33333333%;\n }\n .col-lg-pull-9 {\n right: 75%;\n }\n .col-lg-pull-8 {\n right: 66.66666667%;\n }\n .col-lg-pull-7 {\n right: 58.33333333%;\n }\n .col-lg-pull-6 {\n right: 50%;\n }\n .col-lg-pull-5 {\n right: 41.66666667%;\n }\n .col-lg-pull-4 {\n right: 33.33333333%;\n }\n .col-lg-pull-3 {\n right: 25%;\n }\n .col-lg-pull-2 {\n right: 16.66666667%;\n }\n .col-lg-pull-1 {\n right: 8.33333333%;\n }\n .col-lg-pull-0 {\n right: auto;\n }\n .col-lg-push-12 {\n left: 100%;\n }\n .col-lg-push-11 {\n left: 91.66666667%;\n }\n .col-lg-push-10 {\n left: 83.33333333%;\n }\n .col-lg-push-9 {\n left: 75%;\n }\n .col-lg-push-8 {\n left: 66.66666667%;\n }\n .col-lg-push-7 {\n left: 58.33333333%;\n }\n .col-lg-push-6 {\n left: 50%;\n }\n .col-lg-push-5 {\n left: 41.66666667%;\n }\n .col-lg-push-4 {\n left: 33.33333333%;\n }\n .col-lg-push-3 {\n left: 25%;\n }\n .col-lg-push-2 {\n left: 16.66666667%;\n }\n .col-lg-push-1 {\n left: 8.33333333%;\n }\n .col-lg-push-0 {\n left: auto;\n }\n .col-lg-offset-12 {\n margin-left: 100%;\n }\n .col-lg-offset-11 {\n margin-left: 91.66666667%;\n }\n .col-lg-offset-10 {\n margin-left: 83.33333333%;\n }\n .col-lg-offset-9 {\n margin-left: 75%;\n }\n .col-lg-offset-8 {\n margin-left: 66.66666667%;\n }\n .col-lg-offset-7 {\n margin-left: 58.33333333%;\n }\n .col-lg-offset-6 {\n margin-left: 50%;\n }\n .col-lg-offset-5 {\n margin-left: 41.66666667%;\n }\n .col-lg-offset-4 {\n margin-left: 33.33333333%;\n }\n .col-lg-offset-3 {\n margin-left: 25%;\n }\n .col-lg-offset-2 {\n margin-left: 16.66666667%;\n }\n .col-lg-offset-1 {\n margin-left: 8.33333333%;\n }\n .col-lg-offset-0 {\n margin-left: 0%;\n }\n}\ntable {\n background-color: transparent;\n}\ncaption {\n padding-top: 8px;\n padding-bottom: 8px;\n color: #777777;\n text-align: left;\n}\nth {\n text-align: left;\n}\n.table {\n width: 100%;\n max-width: 100%;\n margin-bottom: 20px;\n}\n.table > thead > tr > th,\n.table > tbody > tr > th,\n.table > tfoot > tr > th,\n.table > thead > tr > td,\n.table > tbody > tr > td,\n.table > tfoot > tr > td {\n padding: 8px;\n line-height: 1.42857143;\n vertical-align: top;\n border-top: 1px solid #ddd;\n}\n.table > thead > tr > th {\n vertical-align: bottom;\n border-bottom: 2px solid #ddd;\n}\n.table > caption + thead > tr:first-child > th,\n.table > colgroup + thead > tr:first-child > th,\n.table > thead:first-child > tr:first-child > th,\n.table > caption + thead > tr:first-child > td,\n.table > colgroup + thead > tr:first-child > td,\n.table > thead:first-child > tr:first-child > td {\n border-top: 0;\n}\n.table > tbody + tbody {\n border-top: 2px solid #ddd;\n}\n.table .table {\n background-color: #fff;\n}\n.table-condensed > thead > tr > th,\n.table-condensed > tbody > tr > th,\n.table-condensed > tfoot > tr > th,\n.table-condensed > thead > tr > td,\n.table-condensed > tbody > tr > td,\n.table-condensed > tfoot > tr > td {\n padding: 5px;\n}\n.table-bordered {\n border: 1px solid #ddd;\n}\n.table-bordered > thead > tr > th,\n.table-bordered > tbody > tr > th,\n.table-bordered > tfoot > tr > th,\n.table-bordered > thead > tr > td,\n.table-bordered > tbody > tr > td,\n.table-bordered > tfoot > tr > td {\n border: 1px solid #ddd;\n}\n.table-bordered > thead > tr > th,\n.table-bordered > thead > tr > td {\n border-bottom-width: 2px;\n}\n.table-striped > tbody > tr:nth-of-type(odd) {\n background-color: #f9f9f9;\n}\n.table-hover > tbody > tr:hover {\n background-color: #f5f5f5;\n}\ntable col[class*=\"col-\"] {\n position: static;\n float: none;\n display: table-column;\n}\ntable td[class*=\"col-\"],\ntable th[class*=\"col-\"] {\n position: static;\n float: none;\n display: table-cell;\n}\n.table > thead > tr > td.active,\n.table > tbody > tr > td.active,\n.table > tfoot > tr > td.active,\n.table > thead > tr > th.active,\n.table > tbody > tr > th.active,\n.table > tfoot > tr > th.active,\n.table > thead > tr.active > td,\n.table > tbody > tr.active > td,\n.table > tfoot > tr.active > td,\n.table > thead > tr.active > th,\n.table > tbody > tr.active > th,\n.table > tfoot > tr.active > th {\n background-color: #f5f5f5;\n}\n.table-hover > tbody > tr > td.active:hover,\n.table-hover > tbody > tr > th.active:hover,\n.table-hover > tbody > tr.active:hover > td,\n.table-hover > tbody > tr:hover > .active,\n.table-hover > tbody > tr.active:hover > th {\n background-color: #e8e8e8;\n}\n.table > thead > tr > td.success,\n.table > tbody > tr > td.success,\n.table > tfoot > tr > td.success,\n.table > thead > tr > th.success,\n.table > tbody > tr > th.success,\n.table > tfoot > tr > th.success,\n.table > thead > tr.success > td,\n.table > tbody > tr.success > td,\n.table > tfoot > tr.success > td,\n.table > thead > tr.success > th,\n.table > tbody > tr.success > th,\n.table > tfoot > tr.success > th {\n background-color: #dff0d8;\n}\n.table-hover > tbody > tr > td.success:hover,\n.table-hover > tbody > tr > th.success:hover,\n.table-hover > tbody > tr.success:hover > td,\n.table-hover > tbody > tr:hover > .success,\n.table-hover > tbody > tr.success:hover > th {\n background-color: #d0e9c6;\n}\n.table > thead > tr > td.info,\n.table > tbody > tr > td.info,\n.table > tfoot > tr > td.info,\n.table > thead > tr > th.info,\n.table > tbody > tr > th.info,\n.table > tfoot > tr > th.info,\n.table > thead > tr.info > td,\n.table > tbody > tr.info > td,\n.table > tfoot > tr.info > td,\n.table > thead > tr.info > th,\n.table > tbody > tr.info > th,\n.table > tfoot > tr.info > th {\n background-color: #d9edf7;\n}\n.table-hover > tbody > tr > td.info:hover,\n.table-hover > tbody > tr > th.info:hover,\n.table-hover > tbody > tr.info:hover > td,\n.table-hover > tbody > tr:hover > .info,\n.table-hover > tbody > tr.info:hover > th {\n background-color: #c4e3f3;\n}\n.table > thead > tr > td.warning,\n.table > tbody > tr > td.warning,\n.table > tfoot > tr > td.warning,\n.table > thead > tr > th.warning,\n.table > tbody > tr > th.warning,\n.table > tfoot > tr > th.warning,\n.table > thead > tr.warning > td,\n.table > tbody > tr.warning > td,\n.table > tfoot > tr.warning > td,\n.table > thead > tr.warning > th,\n.table > tbody > tr.warning > th,\n.table > tfoot > tr.warning > th {\n background-color: #fcf8e3;\n}\n.table-hover > tbody > tr > td.warning:hover,\n.table-hover > tbody > tr > th.warning:hover,\n.table-hover > tbody > tr.warning:hover > td,\n.table-hover > tbody > tr:hover > .warning,\n.table-hover > tbody > tr.warning:hover > th {\n background-color: #faf2cc;\n}\n.table > thead > tr > td.danger,\n.table > tbody > tr > td.danger,\n.table > tfoot > tr > td.danger,\n.table > thead > tr > th.danger,\n.table > tbody > tr > th.danger,\n.table > tfoot > tr > th.danger,\n.table > thead > tr.danger > td,\n.table > tbody > tr.danger > td,\n.table > tfoot > tr.danger > td,\n.table > thead > tr.danger > th,\n.table > tbody > tr.danger > th,\n.table > tfoot > tr.danger > th {\n background-color: #f2dede;\n}\n.table-hover > tbody > tr > td.danger:hover,\n.table-hover > tbody > tr > th.danger:hover,\n.table-hover > tbody > tr.danger:hover > td,\n.table-hover > tbody > tr:hover > .danger,\n.table-hover > tbody > tr.danger:hover > th {\n background-color: #ebcccc;\n}\n.table-responsive {\n overflow-x: auto;\n min-height: 0.01%;\n}\n@media screen and (max-width: 767px) {\n .table-responsive {\n width: 100%;\n margin-bottom: 15px;\n overflow-y: hidden;\n -ms-overflow-style: -ms-autohiding-scrollbar;\n border: 1px solid #ddd;\n }\n .table-responsive > .table {\n margin-bottom: 0;\n }\n .table-responsive > .table > thead > tr > th,\n .table-responsive > .table > tbody > tr > th,\n .table-responsive > .table > tfoot > tr > th,\n .table-responsive > .table > thead > tr > td,\n .table-responsive > .table > tbody > tr > td,\n .table-responsive > .table > tfoot > tr > td {\n white-space: nowrap;\n }\n .table-responsive > .table-bordered {\n border: 0;\n }\n .table-responsive > .table-bordered > thead > tr > th:first-child,\n .table-responsive > .table-bordered > tbody > tr > th:first-child,\n .table-responsive > .table-bordered > tfoot > tr > th:first-child,\n .table-responsive > .table-bordered > thead > tr > td:first-child,\n .table-responsive > .table-bordered > tbody > tr > td:first-child,\n .table-responsive > .table-bordered > tfoot > tr > td:first-child {\n border-left: 0;\n }\n .table-responsive > .table-bordered > thead > tr > th:last-child,\n .table-responsive > .table-bordered > tbody > tr > th:last-child,\n .table-responsive > .table-bordered > tfoot > tr > th:last-child,\n .table-responsive > .table-bordered > thead > tr > td:last-child,\n .table-responsive > .table-bordered > tbody > tr > td:last-child,\n .table-responsive > .table-bordered > tfoot > tr > td:last-child {\n border-right: 0;\n }\n .table-responsive > .table-bordered > tbody > tr:last-child > th,\n .table-responsive > .table-bordered > tfoot > tr:last-child > th,\n .table-responsive > .table-bordered > tbody > tr:last-child > td,\n .table-responsive > .table-bordered > tfoot > tr:last-child > td {\n border-bottom: 0;\n }\n}\nfieldset {\n padding: 0;\n margin: 0;\n border: 0;\n min-width: 0;\n}\nlegend {\n display: block;\n width: 100%;\n padding: 0;\n margin-bottom: 20px;\n font-size: 21px;\n line-height: inherit;\n color: #333333;\n border: 0;\n border-bottom: 1px solid #e5e5e5;\n}\nlabel {\n display: inline-block;\n max-width: 100%;\n margin-bottom: 5px;\n font-weight: bold;\n}\ninput[type=\"search\"] {\n -webkit-box-sizing: border-box;\n -moz-box-sizing: border-box;\n box-sizing: border-box;\n}\ninput[type=\"radio\"],\ninput[type=\"checkbox\"] {\n margin: 4px 0 0;\n margin-top: 1px \\9;\n line-height: normal;\n}\ninput[type=\"file\"] {\n display: block;\n}\ninput[type=\"range\"] {\n display: block;\n width: 100%;\n}\nselect[multiple],\nselect[size] {\n height: auto;\n}\ninput[type=\"file\"]:focus,\ninput[type=\"radio\"]:focus,\ninput[type=\"checkbox\"]:focus {\n outline: 5px auto -webkit-focus-ring-color;\n outline-offset: -2px;\n}\noutput {\n display: block;\n padding-top: 7px;\n font-size: 14px;\n line-height: 1.42857143;\n color: #555555;\n}\n.form-control {\n display: block;\n width: 100%;\n height: 34px;\n padding: 6px 12px;\n font-size: 14px;\n line-height: 1.42857143;\n color: #555555;\n background-color: #fff;\n background-image: none;\n border: 1px solid #ccc;\n border-radius: 4px;\n -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);\n box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);\n -webkit-transition: border-color ease-in-out .15s, box-shadow ease-in-out .15s;\n -o-transition: border-color ease-in-out .15s, box-shadow ease-in-out .15s;\n transition: border-color ease-in-out .15s, box-shadow ease-in-out .15s;\n}\n.form-control:focus {\n border-color: #66afe9;\n outline: 0;\n -webkit-box-shadow: inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, 0.6);\n box-shadow: inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, 0.6);\n}\n.form-control::-moz-placeholder {\n color: #999;\n opacity: 1;\n}\n.form-control:-ms-input-placeholder {\n color: #999;\n}\n.form-control::-webkit-input-placeholder {\n color: #999;\n}\n.form-control::-ms-expand {\n border: 0;\n background-color: transparent;\n}\n.form-control[disabled],\n.form-control[readonly],\nfieldset[disabled] .form-control {\n background-color: #eeeeee;\n opacity: 1;\n}\n.form-control[disabled],\nfieldset[disabled] .form-control {\n cursor: not-allowed;\n}\ntextarea.form-control {\n height: auto;\n}\ninput[type=\"search\"] {\n -webkit-appearance: none;\n}\n@media screen and (-webkit-min-device-pixel-ratio: 0) {\n input[type=\"date\"].form-control,\n input[type=\"time\"].form-control,\n input[type=\"datetime-local\"].form-control,\n input[type=\"month\"].form-control {\n line-height: 34px;\n }\n input[type=\"date\"].input-sm,\n input[type=\"time\"].input-sm,\n input[type=\"datetime-local\"].input-sm,\n input[type=\"month\"].input-sm,\n .input-group-sm input[type=\"date\"],\n .input-group-sm input[type=\"time\"],\n .input-group-sm input[type=\"datetime-local\"],\n .input-group-sm input[type=\"month\"] {\n line-height: 30px;\n }\n input[type=\"date\"].input-lg,\n input[type=\"time\"].input-lg,\n input[type=\"datetime-local\"].input-lg,\n input[type=\"month\"].input-lg,\n .input-group-lg input[type=\"date\"],\n .input-group-lg input[type=\"time\"],\n .input-group-lg input[type=\"datetime-local\"],\n .input-group-lg input[type=\"month\"] {\n line-height: 46px;\n }\n}\n.form-group {\n margin-bottom: 15px;\n}\n.radio,\n.checkbox {\n position: relative;\n display: block;\n margin-top: 10px;\n margin-bottom: 10px;\n}\n.radio label,\n.checkbox label {\n min-height: 20px;\n padding-left: 20px;\n margin-bottom: 0;\n font-weight: normal;\n cursor: pointer;\n}\n.radio input[type=\"radio\"],\n.radio-inline input[type=\"radio\"],\n.checkbox input[type=\"checkbox\"],\n.checkbox-inline input[type=\"checkbox\"] {\n position: absolute;\n margin-left: -20px;\n margin-top: 4px \\9;\n}\n.radio + .radio,\n.checkbox + .checkbox {\n margin-top: -5px;\n}\n.radio-inline,\n.checkbox-inline {\n position: relative;\n display: inline-block;\n padding-left: 20px;\n margin-bottom: 0;\n vertical-align: middle;\n font-weight: normal;\n cursor: pointer;\n}\n.radio-inline + .radio-inline,\n.checkbox-inline + .checkbox-inline {\n margin-top: 0;\n margin-left: 10px;\n}\ninput[type=\"radio\"][disabled],\ninput[type=\"checkbox\"][disabled],\ninput[type=\"radio\"].disabled,\ninput[type=\"checkbox\"].disabled,\nfieldset[disabled] input[type=\"radio\"],\nfieldset[disabled] input[type=\"checkbox\"] {\n cursor: not-allowed;\n}\n.radio-inline.disabled,\n.checkbox-inline.disabled,\nfieldset[disabled] .radio-inline,\nfieldset[disabled] .checkbox-inline {\n cursor: not-allowed;\n}\n.radio.disabled label,\n.checkbox.disabled label,\nfieldset[disabled] .radio label,\nfieldset[disabled] .checkbox label {\n cursor: not-allowed;\n}\n.form-control-static {\n padding-top: 7px;\n padding-bottom: 7px;\n margin-bottom: 0;\n min-height: 34px;\n}\n.form-control-static.input-lg,\n.form-control-static.input-sm {\n padding-left: 0;\n padding-right: 0;\n}\n.input-sm {\n height: 30px;\n padding: 5px 10px;\n font-size: 12px;\n line-height: 1.5;\n border-radius: 3px;\n}\nselect.input-sm {\n height: 30px;\n line-height: 30px;\n}\ntextarea.input-sm,\nselect[multiple].input-sm {\n height: auto;\n}\n.form-group-sm .form-control {\n height: 30px;\n padding: 5px 10px;\n font-size: 12px;\n line-height: 1.5;\n border-radius: 3px;\n}\n.form-group-sm select.form-control {\n height: 30px;\n line-height: 30px;\n}\n.form-group-sm textarea.form-control,\n.form-group-sm select[multiple].form-control {\n height: auto;\n}\n.form-group-sm .form-control-static {\n height: 30px;\n min-height: 32px;\n padding: 6px 10px;\n font-size: 12px;\n line-height: 1.5;\n}\n.input-lg {\n height: 46px;\n padding: 10px 16px;\n font-size: 18px;\n line-height: 1.3333333;\n border-radius: 6px;\n}\nselect.input-lg {\n height: 46px;\n line-height: 46px;\n}\ntextarea.input-lg,\nselect[multiple].input-lg {\n height: auto;\n}\n.form-group-lg .form-control {\n height: 46px;\n padding: 10px 16px;\n font-size: 18px;\n line-height: 1.3333333;\n border-radius: 6px;\n}\n.form-group-lg select.form-control {\n height: 46px;\n line-height: 46px;\n}\n.form-group-lg textarea.form-control,\n.form-group-lg select[multiple].form-control {\n height: auto;\n}\n.form-group-lg .form-control-static {\n height: 46px;\n min-height: 38px;\n padding: 11px 16px;\n font-size: 18px;\n line-height: 1.3333333;\n}\n.has-feedback {\n position: relative;\n}\n.has-feedback .form-control {\n padding-right: 42.5px;\n}\n.form-control-feedback {\n position: absolute;\n top: 0;\n right: 0;\n z-index: 2;\n display: block;\n width: 34px;\n height: 34px;\n line-height: 34px;\n text-align: center;\n pointer-events: none;\n}\n.input-lg + .form-control-feedback,\n.input-group-lg + .form-control-feedback,\n.form-group-lg .form-control + .form-control-feedback {\n width: 46px;\n height: 46px;\n line-height: 46px;\n}\n.input-sm + .form-control-feedback,\n.input-group-sm + .form-control-feedback,\n.form-group-sm .form-control + .form-control-feedback {\n width: 30px;\n height: 30px;\n line-height: 30px;\n}\n.has-success .help-block,\n.has-success .control-label,\n.has-success .radio,\n.has-success .checkbox,\n.has-success .radio-inline,\n.has-success .checkbox-inline,\n.has-success.radio label,\n.has-success.checkbox label,\n.has-success.radio-inline label,\n.has-success.checkbox-inline label {\n color: #3c763d;\n}\n.has-success .form-control {\n border-color: #3c763d;\n -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);\n box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);\n}\n.has-success .form-control:focus {\n border-color: #2b542c;\n -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #67b168;\n box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #67b168;\n}\n.has-success .input-group-addon {\n color: #3c763d;\n border-color: #3c763d;\n background-color: #dff0d8;\n}\n.has-success .form-control-feedback {\n color: #3c763d;\n}\n.has-warning .help-block,\n.has-warning .control-label,\n.has-warning .radio,\n.has-warning .checkbox,\n.has-warning .radio-inline,\n.has-warning .checkbox-inline,\n.has-warning.radio label,\n.has-warning.checkbox label,\n.has-warning.radio-inline label,\n.has-warning.checkbox-inline label {\n color: #8a6d3b;\n}\n.has-warning .form-control {\n border-color: #8a6d3b;\n -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);\n box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);\n}\n.has-warning .form-control:focus {\n border-color: #66512c;\n -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #c0a16b;\n box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #c0a16b;\n}\n.has-warning .input-group-addon {\n color: #8a6d3b;\n border-color: #8a6d3b;\n background-color: #fcf8e3;\n}\n.has-warning .form-control-feedback {\n color: #8a6d3b;\n}\n.has-error .help-block,\n.has-error .control-label,\n.has-error .radio,\n.has-error .checkbox,\n.has-error .radio-inline,\n.has-error .checkbox-inline,\n.has-error.radio label,\n.has-error.checkbox label,\n.has-error.radio-inline label,\n.has-error.checkbox-inline label {\n color: #a94442;\n}\n.has-error .form-control {\n border-color: #a94442;\n -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);\n box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);\n}\n.has-error .form-control:focus {\n border-color: #843534;\n -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #ce8483;\n box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #ce8483;\n}\n.has-error .input-group-addon {\n color: #a94442;\n border-color: #a94442;\n background-color: #f2dede;\n}\n.has-error .form-control-feedback {\n color: #a94442;\n}\n.has-feedback label ~ .form-control-feedback {\n top: 25px;\n}\n.has-feedback label.sr-only ~ .form-control-feedback {\n top: 0;\n}\n.help-block {\n display: block;\n margin-top: 5px;\n margin-bottom: 10px;\n color: #737373;\n}\n@media (min-width: 768px) {\n .form-inline .form-group {\n display: inline-block;\n margin-bottom: 0;\n vertical-align: middle;\n }\n .form-inline .form-control {\n display: inline-block;\n width: auto;\n vertical-align: middle;\n }\n .form-inline .form-control-static {\n display: inline-block;\n }\n .form-inline .input-group {\n display: inline-table;\n vertical-align: middle;\n }\n .form-inline .input-group .input-group-addon,\n .form-inline .input-group .input-group-btn,\n .form-inline .input-group .form-control {\n width: auto;\n }\n .form-inline .input-group > .form-control {\n width: 100%;\n }\n .form-inline .control-label {\n margin-bottom: 0;\n vertical-align: middle;\n }\n .form-inline .radio,\n .form-inline .checkbox {\n display: inline-block;\n margin-top: 0;\n margin-bottom: 0;\n vertical-align: middle;\n }\n .form-inline .radio label,\n .form-inline .checkbox label {\n padding-left: 0;\n }\n .form-inline .radio input[type=\"radio\"],\n .form-inline .checkbox input[type=\"checkbox\"] {\n position: relative;\n margin-left: 0;\n }\n .form-inline .has-feedback .form-control-feedback {\n top: 0;\n }\n}\n.form-horizontal .radio,\n.form-horizontal .checkbox,\n.form-horizontal .radio-inline,\n.form-horizontal .checkbox-inline {\n margin-top: 0;\n margin-bottom: 0;\n padding-top: 7px;\n}\n.form-horizontal .radio,\n.form-horizontal .checkbox {\n min-height: 27px;\n}\n.form-horizontal .form-group {\n margin-left: -15px;\n margin-right: -15px;\n}\n@media (min-width: 768px) {\n .form-horizontal .control-label {\n text-align: right;\n margin-bottom: 0;\n padding-top: 7px;\n }\n}\n.form-horizontal .has-feedback .form-control-feedback {\n right: 15px;\n}\n@media (min-width: 768px) {\n .form-horizontal .form-group-lg .control-label {\n padding-top: 11px;\n font-size: 18px;\n }\n}\n@media (min-width: 768px) {\n .form-horizontal .form-group-sm .control-label {\n padding-top: 6px;\n font-size: 12px;\n }\n}\n.btn {\n display: inline-block;\n margin-bottom: 0;\n font-weight: normal;\n text-align: center;\n vertical-align: middle;\n touch-action: manipulation;\n cursor: pointer;\n background-image: none;\n border: 1px solid transparent;\n white-space: nowrap;\n padding: 6px 12px;\n font-size: 14px;\n line-height: 1.42857143;\n border-radius: 4px;\n -webkit-user-select: none;\n -moz-user-select: none;\n -ms-user-select: none;\n user-select: none;\n}\n.btn:focus,\n.btn:active:focus,\n.btn.active:focus,\n.btn.focus,\n.btn:active.focus,\n.btn.active.focus {\n outline: 5px auto -webkit-focus-ring-color;\n outline-offset: -2px;\n}\n.btn:hover,\n.btn:focus,\n.btn.focus {\n color: #333;\n text-decoration: none;\n}\n.btn:active,\n.btn.active {\n outline: 0;\n background-image: none;\n -webkit-box-shadow: inset 0 3px 5px rgba(0, 0, 0, 0.125);\n box-shadow: inset 0 3px 5px rgba(0, 0, 0, 0.125);\n}\n.btn.disabled,\n.btn[disabled],\nfieldset[disabled] .btn {\n cursor: not-allowed;\n opacity: 0.65;\n filter: alpha(opacity=65);\n -webkit-box-shadow: none;\n box-shadow: none;\n}\na.btn.disabled,\nfieldset[disabled] a.btn {\n pointer-events: none;\n}\n.btn-default {\n color: #333;\n background-color: #fff;\n border-color: #ccc;\n}\n.btn-default:focus,\n.btn-default.focus {\n color: #333;\n background-color: #e6e6e6;\n border-color: #8c8c8c;\n}\n.btn-default:hover {\n color: #333;\n background-color: #e6e6e6;\n border-color: #adadad;\n}\n.btn-default:active,\n.btn-default.active,\n.open > .dropdown-toggle.btn-default {\n color: #333;\n background-color: #e6e6e6;\n border-color: #adadad;\n}\n.btn-default:active:hover,\n.btn-default.active:hover,\n.open > .dropdown-toggle.btn-default:hover,\n.btn-default:active:focus,\n.btn-default.active:focus,\n.open > .dropdown-toggle.btn-default:focus,\n.btn-default:active.focus,\n.btn-default.active.focus,\n.open > .dropdown-toggle.btn-default.focus {\n color: #333;\n background-color: #d4d4d4;\n border-color: #8c8c8c;\n}\n.btn-default:active,\n.btn-default.active,\n.open > .dropdown-toggle.btn-default {\n background-image: none;\n}\n.btn-default.disabled:hover,\n.btn-default[disabled]:hover,\nfieldset[disabled] .btn-default:hover,\n.btn-default.disabled:focus,\n.btn-default[disabled]:focus,\nfieldset[disabled] .btn-default:focus,\n.btn-default.disabled.focus,\n.btn-default[disabled].focus,\nfieldset[disabled] .btn-default.focus {\n background-color: #fff;\n border-color: #ccc;\n}\n.btn-default .badge {\n color: #fff;\n background-color: #333;\n}\n.btn-primary {\n color: #fff;\n background-color: #337ab7;\n border-color: #2e6da4;\n}\n.btn-primary:focus,\n.btn-primary.focus {\n color: #fff;\n background-color: #286090;\n border-color: #122b40;\n}\n.btn-primary:hover {\n color: #fff;\n background-color: #286090;\n border-color: #204d74;\n}\n.btn-primary:active,\n.btn-primary.active,\n.open > .dropdown-toggle.btn-primary {\n color: #fff;\n background-color: #286090;\n border-color: #204d74;\n}\n.btn-primary:active:hover,\n.btn-primary.active:hover,\n.open > .dropdown-toggle.btn-primary:hover,\n.btn-primary:active:focus,\n.btn-primary.active:focus,\n.open > .dropdown-toggle.btn-primary:focus,\n.btn-primary:active.focus,\n.btn-primary.active.focus,\n.open > .dropdown-toggle.btn-primary.focus {\n color: #fff;\n background-color: #204d74;\n border-color: #122b40;\n}\n.btn-primary:active,\n.btn-primary.active,\n.open > .dropdown-toggle.btn-primary {\n background-image: none;\n}\n.btn-primary.disabled:hover,\n.btn-primary[disabled]:hover,\nfieldset[disabled] .btn-primary:hover,\n.btn-primary.disabled:focus,\n.btn-primary[disabled]:focus,\nfieldset[disabled] .btn-primary:focus,\n.btn-primary.disabled.focus,\n.btn-primary[disabled].focus,\nfieldset[disabled] .btn-primary.focus {\n background-color: #337ab7;\n border-color: #2e6da4;\n}\n.btn-primary .badge {\n color: #337ab7;\n background-color: #fff;\n}\n.btn-success {\n color: #fff;\n background-color: #5cb85c;\n border-color: #4cae4c;\n}\n.btn-success:focus,\n.btn-success.focus {\n color: #fff;\n background-color: #449d44;\n border-color: #255625;\n}\n.btn-success:hover {\n color: #fff;\n background-color: #449d44;\n border-color: #398439;\n}\n.btn-success:active,\n.btn-success.active,\n.open > .dropdown-toggle.btn-success {\n color: #fff;\n background-color: #449d44;\n border-color: #398439;\n}\n.btn-success:active:hover,\n.btn-success.active:hover,\n.open > .dropdown-toggle.btn-success:hover,\n.btn-success:active:focus,\n.btn-success.active:focus,\n.open > .dropdown-toggle.btn-success:focus,\n.btn-success:active.focus,\n.btn-success.active.focus,\n.open > .dropdown-toggle.btn-success.focus {\n color: #fff;\n background-color: #398439;\n border-color: #255625;\n}\n.btn-success:active,\n.btn-success.active,\n.open > .dropdown-toggle.btn-success {\n background-image: none;\n}\n.btn-success.disabled:hover,\n.btn-success[disabled]:hover,\nfieldset[disabled] .btn-success:hover,\n.btn-success.disabled:focus,\n.btn-success[disabled]:focus,\nfieldset[disabled] .btn-success:focus,\n.btn-success.disabled.focus,\n.btn-success[disabled].focus,\nfieldset[disabled] .btn-success.focus {\n background-color: #5cb85c;\n border-color: #4cae4c;\n}\n.btn-success .badge {\n color: #5cb85c;\n background-color: #fff;\n}\n.btn-info {\n color: #fff;\n background-color: #5bc0de;\n border-color: #46b8da;\n}\n.btn-info:focus,\n.btn-info.focus {\n color: #fff;\n background-color: #31b0d5;\n border-color: #1b6d85;\n}\n.btn-info:hover {\n color: #fff;\n background-color: #31b0d5;\n border-color: #269abc;\n}\n.btn-info:active,\n.btn-info.active,\n.open > .dropdown-toggle.btn-info {\n color: #fff;\n background-color: #31b0d5;\n border-color: #269abc;\n}\n.btn-info:active:hover,\n.btn-info.active:hover,\n.open > .dropdown-toggle.btn-info:hover,\n.btn-info:active:focus,\n.btn-info.active:focus,\n.open > .dropdown-toggle.btn-info:focus,\n.btn-info:active.focus,\n.btn-info.active.focus,\n.open > .dropdown-toggle.btn-info.focus {\n color: #fff;\n background-color: #269abc;\n border-color: #1b6d85;\n}\n.btn-info:active,\n.btn-info.active,\n.open > .dropdown-toggle.btn-info {\n background-image: none;\n}\n.btn-info.disabled:hover,\n.btn-info[disabled]:hover,\nfieldset[disabled] .btn-info:hover,\n.btn-info.disabled:focus,\n.btn-info[disabled]:focus,\nfieldset[disabled] .btn-info:focus,\n.btn-info.disabled.focus,\n.btn-info[disabled].focus,\nfieldset[disabled] .btn-info.focus {\n background-color: #5bc0de;\n border-color: #46b8da;\n}\n.btn-info .badge {\n color: #5bc0de;\n background-color: #fff;\n}\n.btn-warning {\n color: #fff;\n background-color: #f0ad4e;\n border-color: #eea236;\n}\n.btn-warning:focus,\n.btn-warning.focus {\n color: #fff;\n background-color: #ec971f;\n border-color: #985f0d;\n}\n.btn-warning:hover {\n color: #fff;\n background-color: #ec971f;\n border-color: #d58512;\n}\n.btn-warning:active,\n.btn-warning.active,\n.open > .dropdown-toggle.btn-warning {\n color: #fff;\n background-color: #ec971f;\n border-color: #d58512;\n}\n.btn-warning:active:hover,\n.btn-warning.active:hover,\n.open > .dropdown-toggle.btn-warning:hover,\n.btn-warning:active:focus,\n.btn-warning.active:focus,\n.open > .dropdown-toggle.btn-warning:focus,\n.btn-warning:active.focus,\n.btn-warning.active.focus,\n.open > .dropdown-toggle.btn-warning.focus {\n color: #fff;\n background-color: #d58512;\n border-color: #985f0d;\n}\n.btn-warning:active,\n.btn-warning.active,\n.open > .dropdown-toggle.btn-warning {\n background-image: none;\n}\n.btn-warning.disabled:hover,\n.btn-warning[disabled]:hover,\nfieldset[disabled] .btn-warning:hover,\n.btn-warning.disabled:focus,\n.btn-warning[disabled]:focus,\nfieldset[disabled] .btn-warning:focus,\n.btn-warning.disabled.focus,\n.btn-warning[disabled].focus,\nfieldset[disabled] .btn-warning.focus {\n background-color: #f0ad4e;\n border-color: #eea236;\n}\n.btn-warning .badge {\n color: #f0ad4e;\n background-color: #fff;\n}\n.btn-danger {\n color: #fff;\n background-color: #d9534f;\n border-color: #d43f3a;\n}\n.btn-danger:focus,\n.btn-danger.focus {\n color: #fff;\n background-color: #c9302c;\n border-color: #761c19;\n}\n.btn-danger:hover {\n color: #fff;\n background-color: #c9302c;\n border-color: #ac2925;\n}\n.btn-danger:active,\n.btn-danger.active,\n.open > .dropdown-toggle.btn-danger {\n color: #fff;\n background-color: #c9302c;\n border-color: #ac2925;\n}\n.btn-danger:active:hover,\n.btn-danger.active:hover,\n.open > .dropdown-toggle.btn-danger:hover,\n.btn-danger:active:focus,\n.btn-danger.active:focus,\n.open > .dropdown-toggle.btn-danger:focus,\n.btn-danger:active.focus,\n.btn-danger.active.focus,\n.open > .dropdown-toggle.btn-danger.focus {\n color: #fff;\n background-color: #ac2925;\n border-color: #761c19;\n}\n.btn-danger:active,\n.btn-danger.active,\n.open > .dropdown-toggle.btn-danger {\n background-image: none;\n}\n.btn-danger.disabled:hover,\n.btn-danger[disabled]:hover,\nfieldset[disabled] .btn-danger:hover,\n.btn-danger.disabled:focus,\n.btn-danger[disabled]:focus,\nfieldset[disabled] .btn-danger:focus,\n.btn-danger.disabled.focus,\n.btn-danger[disabled].focus,\nfieldset[disabled] .btn-danger.focus {\n background-color: #d9534f;\n border-color: #d43f3a;\n}\n.btn-danger .badge {\n color: #d9534f;\n background-color: #fff;\n}\n.btn-link {\n color: #337ab7;\n font-weight: normal;\n border-radius: 0;\n}\n.btn-link,\n.btn-link:active,\n.btn-link.active,\n.btn-link[disabled],\nfieldset[disabled] .btn-link {\n background-color: transparent;\n -webkit-box-shadow: none;\n box-shadow: none;\n}\n.btn-link,\n.btn-link:hover,\n.btn-link:focus,\n.btn-link:active {\n border-color: transparent;\n}\n.btn-link:hover,\n.btn-link:focus {\n color: #23527c;\n text-decoration: underline;\n background-color: transparent;\n}\n.btn-link[disabled]:hover,\nfieldset[disabled] .btn-link:hover,\n.btn-link[disabled]:focus,\nfieldset[disabled] .btn-link:focus {\n color: #777777;\n text-decoration: none;\n}\n.btn-lg,\n.btn-group-lg > .btn {\n padding: 10px 16px;\n font-size: 18px;\n line-height: 1.3333333;\n border-radius: 6px;\n}\n.btn-sm,\n.btn-group-sm > .btn {\n padding: 5px 10px;\n font-size: 12px;\n line-height: 1.5;\n border-radius: 3px;\n}\n.btn-xs,\n.btn-group-xs > .btn {\n padding: 1px 5px;\n font-size: 12px;\n line-height: 1.5;\n border-radius: 3px;\n}\n.btn-block {\n display: block;\n width: 100%;\n}\n.btn-block + .btn-block {\n margin-top: 5px;\n}\ninput[type=\"submit\"].btn-block,\ninput[type=\"reset\"].btn-block,\ninput[type=\"button\"].btn-block {\n width: 100%;\n}\n.fade {\n opacity: 0;\n -webkit-transition: opacity 0.15s linear;\n -o-transition: opacity 0.15s linear;\n transition: opacity 0.15s linear;\n}\n.fade.in {\n opacity: 1;\n}\n.collapse {\n display: none;\n}\n.collapse.in {\n display: block;\n}\ntr.collapse.in {\n display: table-row;\n}\ntbody.collapse.in {\n display: table-row-group;\n}\n.collapsing {\n position: relative;\n height: 0;\n overflow: hidden;\n -webkit-transition-property: height, visibility;\n transition-property: height, visibility;\n -webkit-transition-duration: 0.35s;\n transition-duration: 0.35s;\n -webkit-transition-timing-function: ease;\n transition-timing-function: ease;\n}\n.caret {\n display: inline-block;\n width: 0;\n height: 0;\n margin-left: 2px;\n vertical-align: middle;\n border-top: 4px dashed;\n border-top: 4px solid \\9;\n border-right: 4px solid transparent;\n border-left: 4px solid transparent;\n}\n.dropup,\n.dropdown {\n position: relative;\n}\n.dropdown-toggle:focus {\n outline: 0;\n}\n.dropdown-menu {\n position: absolute;\n top: 100%;\n left: 0;\n z-index: 1000;\n display: none;\n float: left;\n min-width: 160px;\n padding: 5px 0;\n margin: 2px 0 0;\n list-style: none;\n font-size: 14px;\n text-align: left;\n background-color: #fff;\n border: 1px solid #ccc;\n border: 1px solid rgba(0, 0, 0, 0.15);\n border-radius: 4px;\n -webkit-box-shadow: 0 6px 12px rgba(0, 0, 0, 0.175);\n box-shadow: 0 6px 12px rgba(0, 0, 0, 0.175);\n background-clip: padding-box;\n}\n.dropdown-menu.pull-right {\n right: 0;\n left: auto;\n}\n.dropdown-menu .divider {\n height: 1px;\n margin: 9px 0;\n overflow: hidden;\n background-color: #e5e5e5;\n}\n.dropdown-menu > li > a {\n display: block;\n padding: 3px 20px;\n clear: both;\n font-weight: normal;\n line-height: 1.42857143;\n color: #333333;\n white-space: nowrap;\n}\n.dropdown-menu > li > a:hover,\n.dropdown-menu > li > a:focus {\n text-decoration: none;\n color: #262626;\n background-color: #f5f5f5;\n}\n.dropdown-menu > .active > a,\n.dropdown-menu > .active > a:hover,\n.dropdown-menu > .active > a:focus {\n color: #fff;\n text-decoration: none;\n outline: 0;\n background-color: #337ab7;\n}\n.dropdown-menu > .disabled > a,\n.dropdown-menu > .disabled > a:hover,\n.dropdown-menu > .disabled > a:focus {\n color: #777777;\n}\n.dropdown-menu > .disabled > a:hover,\n.dropdown-menu > .disabled > a:focus {\n text-decoration: none;\n background-color: transparent;\n background-image: none;\n filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);\n cursor: not-allowed;\n}\n.open > .dropdown-menu {\n display: block;\n}\n.open > a {\n outline: 0;\n}\n.dropdown-menu-right {\n left: auto;\n right: 0;\n}\n.dropdown-menu-left {\n left: 0;\n right: auto;\n}\n.dropdown-header {\n display: block;\n padding: 3px 20px;\n font-size: 12px;\n line-height: 1.42857143;\n color: #777777;\n white-space: nowrap;\n}\n.dropdown-backdrop {\n position: fixed;\n left: 0;\n right: 0;\n bottom: 0;\n top: 0;\n z-index: 990;\n}\n.pull-right > .dropdown-menu {\n right: 0;\n left: auto;\n}\n.dropup .caret,\n.navbar-fixed-bottom .dropdown .caret {\n border-top: 0;\n border-bottom: 4px dashed;\n border-bottom: 4px solid \\9;\n content: \"\";\n}\n.dropup .dropdown-menu,\n.navbar-fixed-bottom .dropdown .dropdown-menu {\n top: auto;\n bottom: 100%;\n margin-bottom: 2px;\n}\n@media (min-width: 768px) {\n .navbar-right .dropdown-menu {\n left: auto;\n right: 0;\n }\n .navbar-right .dropdown-menu-left {\n left: 0;\n right: auto;\n }\n}\n.btn-group,\n.btn-group-vertical {\n position: relative;\n display: inline-block;\n vertical-align: middle;\n}\n.btn-group > .btn,\n.btn-group-vertical > .btn {\n position: relative;\n float: left;\n}\n.btn-group > .btn:hover,\n.btn-group-vertical > .btn:hover,\n.btn-group > .btn:focus,\n.btn-group-vertical > .btn:focus,\n.btn-group > .btn:active,\n.btn-group-vertical > .btn:active,\n.btn-group > .btn.active,\n.btn-group-vertical > .btn.active {\n z-index: 2;\n}\n.btn-group .btn + .btn,\n.btn-group .btn + .btn-group,\n.btn-group .btn-group + .btn,\n.btn-group .btn-group + .btn-group {\n margin-left: -1px;\n}\n.btn-toolbar {\n margin-left: -5px;\n}\n.btn-toolbar .btn,\n.btn-toolbar .btn-group,\n.btn-toolbar .input-group {\n float: left;\n}\n.btn-toolbar > .btn,\n.btn-toolbar > .btn-group,\n.btn-toolbar > .input-group {\n margin-left: 5px;\n}\n.btn-group > .btn:not(:first-child):not(:last-child):not(.dropdown-toggle) {\n border-radius: 0;\n}\n.btn-group > .btn:first-child {\n margin-left: 0;\n}\n.btn-group > .btn:first-child:not(:last-child):not(.dropdown-toggle) {\n border-bottom-right-radius: 0;\n border-top-right-radius: 0;\n}\n.btn-group > .btn:last-child:not(:first-child),\n.btn-group > .dropdown-toggle:not(:first-child) {\n border-bottom-left-radius: 0;\n border-top-left-radius: 0;\n}\n.btn-group > .btn-group {\n float: left;\n}\n.btn-group > .btn-group:not(:first-child):not(:last-child) > .btn {\n border-radius: 0;\n}\n.btn-group > .btn-group:first-child:not(:last-child) > .btn:last-child,\n.btn-group > .btn-group:first-child:not(:last-child) > .dropdown-toggle {\n border-bottom-right-radius: 0;\n border-top-right-radius: 0;\n}\n.btn-group > .btn-group:last-child:not(:first-child) > .btn:first-child {\n border-bottom-left-radius: 0;\n border-top-left-radius: 0;\n}\n.btn-group .dropdown-toggle:active,\n.btn-group.open .dropdown-toggle {\n outline: 0;\n}\n.btn-group > .btn + .dropdown-toggle {\n padding-left: 8px;\n padding-right: 8px;\n}\n.btn-group > .btn-lg + .dropdown-toggle {\n padding-left: 12px;\n padding-right: 12px;\n}\n.btn-group.open .dropdown-toggle {\n -webkit-box-shadow: inset 0 3px 5px rgba(0, 0, 0, 0.125);\n box-shadow: inset 0 3px 5px rgba(0, 0, 0, 0.125);\n}\n.btn-group.open .dropdown-toggle.btn-link {\n -webkit-box-shadow: none;\n box-shadow: none;\n}\n.btn .caret {\n margin-left: 0;\n}\n.btn-lg .caret {\n border-width: 5px 5px 0;\n border-bottom-width: 0;\n}\n.dropup .btn-lg .caret {\n border-width: 0 5px 5px;\n}\n.btn-group-vertical > .btn,\n.btn-group-vertical > .btn-group,\n.btn-group-vertical > .btn-group > .btn {\n display: block;\n float: none;\n width: 100%;\n max-width: 100%;\n}\n.btn-group-vertical > .btn-group > .btn {\n float: none;\n}\n.btn-group-vertical > .btn + .btn,\n.btn-group-vertical > .btn + .btn-group,\n.btn-group-vertical > .btn-group + .btn,\n.btn-group-vertical > .btn-group + .btn-group {\n margin-top: -1px;\n margin-left: 0;\n}\n.btn-group-vertical > .btn:not(:first-child):not(:last-child) {\n border-radius: 0;\n}\n.btn-group-vertical > .btn:first-child:not(:last-child) {\n border-top-right-radius: 4px;\n border-top-left-radius: 4px;\n border-bottom-right-radius: 0;\n border-bottom-left-radius: 0;\n}\n.btn-group-vertical > .btn:last-child:not(:first-child) {\n border-top-right-radius: 0;\n border-top-left-radius: 0;\n border-bottom-right-radius: 4px;\n border-bottom-left-radius: 4px;\n}\n.btn-group-vertical > .btn-group:not(:first-child):not(:last-child) > .btn {\n border-radius: 0;\n}\n.btn-group-vertical > .btn-group:first-child:not(:last-child) > .btn:last-child,\n.btn-group-vertical > .btn-group:first-child:not(:last-child) > .dropdown-toggle {\n border-bottom-right-radius: 0;\n border-bottom-left-radius: 0;\n}\n.btn-group-vertical > .btn-group:last-child:not(:first-child) > .btn:first-child {\n border-top-right-radius: 0;\n border-top-left-radius: 0;\n}\n.btn-group-justified {\n display: table;\n width: 100%;\n table-layout: fixed;\n border-collapse: separate;\n}\n.btn-group-justified > .btn,\n.btn-group-justified > .btn-group {\n float: none;\n display: table-cell;\n width: 1%;\n}\n.btn-group-justified > .btn-group .btn {\n width: 100%;\n}\n.btn-group-justified > .btn-group .dropdown-menu {\n left: auto;\n}\n[data-toggle=\"buttons\"] > .btn input[type=\"radio\"],\n[data-toggle=\"buttons\"] > .btn-group > .btn input[type=\"radio\"],\n[data-toggle=\"buttons\"] > .btn input[type=\"checkbox\"],\n[data-toggle=\"buttons\"] > .btn-group > .btn input[type=\"checkbox\"] {\n position: absolute;\n clip: rect(0, 0, 0, 0);\n pointer-events: none;\n}\n.input-group {\n position: relative;\n display: table;\n border-collapse: separate;\n}\n.input-group[class*=\"col-\"] {\n float: none;\n padding-left: 0;\n padding-right: 0;\n}\n.input-group .form-control {\n position: relative;\n z-index: 2;\n float: left;\n width: 100%;\n margin-bottom: 0;\n}\n.input-group .form-control:focus {\n z-index: 3;\n}\n.input-group-lg > .form-control,\n.input-group-lg > .input-group-addon,\n.input-group-lg > .input-group-btn > .btn {\n height: 46px;\n padding: 10px 16px;\n font-size: 18px;\n line-height: 1.3333333;\n border-radius: 6px;\n}\nselect.input-group-lg > .form-control,\nselect.input-group-lg > .input-group-addon,\nselect.input-group-lg > .input-group-btn > .btn {\n height: 46px;\n line-height: 46px;\n}\ntextarea.input-group-lg > .form-control,\ntextarea.input-group-lg > .input-group-addon,\ntextarea.input-group-lg > .input-group-btn > .btn,\nselect[multiple].input-group-lg > .form-control,\nselect[multiple].input-group-lg > .input-group-addon,\nselect[multiple].input-group-lg > .input-group-btn > .btn {\n height: auto;\n}\n.input-group-sm > .form-control,\n.input-group-sm > .input-group-addon,\n.input-group-sm > .input-group-btn > .btn {\n height: 30px;\n padding: 5px 10px;\n font-size: 12px;\n line-height: 1.5;\n border-radius: 3px;\n}\nselect.input-group-sm > .form-control,\nselect.input-group-sm > .input-group-addon,\nselect.input-group-sm > .input-group-btn > .btn {\n height: 30px;\n line-height: 30px;\n}\ntextarea.input-group-sm > .form-control,\ntextarea.input-group-sm > .input-group-addon,\ntextarea.input-group-sm > .input-group-btn > .btn,\nselect[multiple].input-group-sm > .form-control,\nselect[multiple].input-group-sm > .input-group-addon,\nselect[multiple].input-group-sm > .input-group-btn > .btn {\n height: auto;\n}\n.input-group-addon,\n.input-group-btn,\n.input-group .form-control {\n display: table-cell;\n}\n.input-group-addon:not(:first-child):not(:last-child),\n.input-group-btn:not(:first-child):not(:last-child),\n.input-group .form-control:not(:first-child):not(:last-child) {\n border-radius: 0;\n}\n.input-group-addon,\n.input-group-btn {\n width: 1%;\n white-space: nowrap;\n vertical-align: middle;\n}\n.input-group-addon {\n padding: 6px 12px;\n font-size: 14px;\n font-weight: normal;\n line-height: 1;\n color: #555555;\n text-align: center;\n background-color: #eeeeee;\n border: 1px solid #ccc;\n border-radius: 4px;\n}\n.input-group-addon.input-sm {\n padding: 5px 10px;\n font-size: 12px;\n border-radius: 3px;\n}\n.input-group-addon.input-lg {\n padding: 10px 16px;\n font-size: 18px;\n border-radius: 6px;\n}\n.input-group-addon input[type=\"radio\"],\n.input-group-addon input[type=\"checkbox\"] {\n margin-top: 0;\n}\n.input-group .form-control:first-child,\n.input-group-addon:first-child,\n.input-group-btn:first-child > .btn,\n.input-group-btn:first-child > .btn-group > .btn,\n.input-group-btn:first-child > .dropdown-toggle,\n.input-group-btn:last-child > .btn:not(:last-child):not(.dropdown-toggle),\n.input-group-btn:last-child > .btn-group:not(:last-child) > .btn {\n border-bottom-right-radius: 0;\n border-top-right-radius: 0;\n}\n.input-group-addon:first-child {\n border-right: 0;\n}\n.input-group .form-control:last-child,\n.input-group-addon:last-child,\n.input-group-btn:last-child > .btn,\n.input-group-btn:last-child > .btn-group > .btn,\n.input-group-btn:last-child > .dropdown-toggle,\n.input-group-btn:first-child > .btn:not(:first-child),\n.input-group-btn:first-child > .btn-group:not(:first-child) > .btn {\n border-bottom-left-radius: 0;\n border-top-left-radius: 0;\n}\n.input-group-addon:last-child {\n border-left: 0;\n}\n.input-group-btn {\n position: relative;\n font-size: 0;\n white-space: nowrap;\n}\n.input-group-btn > .btn {\n position: relative;\n}\n.input-group-btn > .btn + .btn {\n margin-left: -1px;\n}\n.input-group-btn > .btn:hover,\n.input-group-btn > .btn:focus,\n.input-group-btn > .btn:active {\n z-index: 2;\n}\n.input-group-btn:first-child > .btn,\n.input-group-btn:first-child > .btn-group {\n margin-right: -1px;\n}\n.input-group-btn:last-child > .btn,\n.input-group-btn:last-child > .btn-group {\n z-index: 2;\n margin-left: -1px;\n}\n.nav {\n margin-bottom: 0;\n padding-left: 0;\n list-style: none;\n}\n.nav > li {\n position: relative;\n display: block;\n}\n.nav > li > a {\n position: relative;\n display: block;\n padding: 10px 15px;\n}\n.nav > li > a:hover,\n.nav > li > a:focus {\n text-decoration: none;\n background-color: #eeeeee;\n}\n.nav > li.disabled > a {\n color: #777777;\n}\n.nav > li.disabled > a:hover,\n.nav > li.disabled > a:focus {\n color: #777777;\n text-decoration: none;\n background-color: transparent;\n cursor: not-allowed;\n}\n.nav .open > a,\n.nav .open > a:hover,\n.nav .open > a:focus {\n background-color: #eeeeee;\n border-color: #337ab7;\n}\n.nav .nav-divider {\n height: 1px;\n margin: 9px 0;\n overflow: hidden;\n background-color: #e5e5e5;\n}\n.nav > li > a > img {\n max-width: none;\n}\n.nav-tabs {\n border-bottom: 1px solid #ddd;\n}\n.nav-tabs > li {\n float: left;\n margin-bottom: -1px;\n}\n.nav-tabs > li > a {\n margin-right: 2px;\n line-height: 1.42857143;\n border: 1px solid transparent;\n border-radius: 4px 4px 0 0;\n}\n.nav-tabs > li > a:hover {\n border-color: #eeeeee #eeeeee #ddd;\n}\n.nav-tabs > li.active > a,\n.nav-tabs > li.active > a:hover,\n.nav-tabs > li.active > a:focus {\n color: #555555;\n background-color: #fff;\n border: 1px solid #ddd;\n border-bottom-color: transparent;\n cursor: default;\n}\n.nav-tabs.nav-justified {\n width: 100%;\n border-bottom: 0;\n}\n.nav-tabs.nav-justified > li {\n float: none;\n}\n.nav-tabs.nav-justified > li > a {\n text-align: center;\n margin-bottom: 5px;\n}\n.nav-tabs.nav-justified > .dropdown .dropdown-menu {\n top: auto;\n left: auto;\n}\n@media (min-width: 768px) {\n .nav-tabs.nav-justified > li {\n display: table-cell;\n width: 1%;\n }\n .nav-tabs.nav-justified > li > a {\n margin-bottom: 0;\n }\n}\n.nav-tabs.nav-justified > li > a {\n margin-right: 0;\n border-radius: 4px;\n}\n.nav-tabs.nav-justified > .active > a,\n.nav-tabs.nav-justified > .active > a:hover,\n.nav-tabs.nav-justified > .active > a:focus {\n border: 1px solid #ddd;\n}\n@media (min-width: 768px) {\n .nav-tabs.nav-justified > li > a {\n border-bottom: 1px solid #ddd;\n border-radius: 4px 4px 0 0;\n }\n .nav-tabs.nav-justified > .active > a,\n .nav-tabs.nav-justified > .active > a:hover,\n .nav-tabs.nav-justified > .active > a:focus {\n border-bottom-color: #fff;\n }\n}\n.nav-pills > li {\n float: left;\n}\n.nav-pills > li > a {\n border-radius: 4px;\n}\n.nav-pills > li + li {\n margin-left: 2px;\n}\n.nav-pills > li.active > a,\n.nav-pills > li.active > a:hover,\n.nav-pills > li.active > a:focus {\n color: #fff;\n background-color: #337ab7;\n}\n.nav-stacked > li {\n float: none;\n}\n.nav-stacked > li + li {\n margin-top: 2px;\n margin-left: 0;\n}\n.nav-justified {\n width: 100%;\n}\n.nav-justified > li {\n float: none;\n}\n.nav-justified > li > a {\n text-align: center;\n margin-bottom: 5px;\n}\n.nav-justified > .dropdown .dropdown-menu {\n top: auto;\n left: auto;\n}\n@media (min-width: 768px) {\n .nav-justified > li {\n display: table-cell;\n width: 1%;\n }\n .nav-justified > li > a {\n margin-bottom: 0;\n }\n}\n.nav-tabs-justified {\n border-bottom: 0;\n}\n.nav-tabs-justified > li > a {\n margin-right: 0;\n border-radius: 4px;\n}\n.nav-tabs-justified > .active > a,\n.nav-tabs-justified > .active > a:hover,\n.nav-tabs-justified > .active > a:focus {\n border: 1px solid #ddd;\n}\n@media (min-width: 768px) {\n .nav-tabs-justified > li > a {\n border-bottom: 1px solid #ddd;\n border-radius: 4px 4px 0 0;\n }\n .nav-tabs-justified > .active > a,\n .nav-tabs-justified > .active > a:hover,\n .nav-tabs-justified > .active > a:focus {\n border-bottom-color: #fff;\n }\n}\n.tab-content > .tab-pane {\n display: none;\n}\n.tab-content > .active {\n display: block;\n}\n.nav-tabs .dropdown-menu {\n margin-top: -1px;\n border-top-right-radius: 0;\n border-top-left-radius: 0;\n}\n.navbar {\n position: relative;\n min-height: 50px;\n margin-bottom: 20px;\n border: 1px solid transparent;\n}\n@media (min-width: 768px) {\n .navbar {\n border-radius: 4px;\n }\n}\n@media (min-width: 768px) {\n .navbar-header {\n float: left;\n }\n}\n.navbar-collapse {\n overflow-x: visible;\n padding-right: 15px;\n padding-left: 15px;\n border-top: 1px solid transparent;\n box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.1);\n -webkit-overflow-scrolling: touch;\n}\n.navbar-collapse.in {\n overflow-y: auto;\n}\n@media (min-width: 768px) {\n .navbar-collapse {\n width: auto;\n border-top: 0;\n box-shadow: none;\n }\n .navbar-collapse.collapse {\n display: block !important;\n height: auto !important;\n padding-bottom: 0;\n overflow: visible !important;\n }\n .navbar-collapse.in {\n overflow-y: visible;\n }\n .navbar-fixed-top .navbar-collapse,\n .navbar-static-top .navbar-collapse,\n .navbar-fixed-bottom .navbar-collapse {\n padding-left: 0;\n padding-right: 0;\n }\n}\n.navbar-fixed-top .navbar-collapse,\n.navbar-fixed-bottom .navbar-collapse {\n max-height: 340px;\n}\n@media (max-device-width: 480px) and (orientation: landscape) {\n .navbar-fixed-top .navbar-collapse,\n .navbar-fixed-bottom .navbar-collapse {\n max-height: 200px;\n }\n}\n.container > .navbar-header,\n.container-fluid > .navbar-header,\n.container > .navbar-collapse,\n.container-fluid > .navbar-collapse {\n margin-right: -15px;\n margin-left: -15px;\n}\n@media (min-width: 768px) {\n .container > .navbar-header,\n .container-fluid > .navbar-header,\n .container > .navbar-collapse,\n .container-fluid > .navbar-collapse {\n margin-right: 0;\n margin-left: 0;\n }\n}\n.navbar-static-top {\n z-index: 1000;\n border-width: 0 0 1px;\n}\n@media (min-width: 768px) {\n .navbar-static-top {\n border-radius: 0;\n }\n}\n.navbar-fixed-top,\n.navbar-fixed-bottom {\n position: fixed;\n right: 0;\n left: 0;\n z-index: 1030;\n}\n@media (min-width: 768px) {\n .navbar-fixed-top,\n .navbar-fixed-bottom {\n border-radius: 0;\n }\n}\n.navbar-fixed-top {\n top: 0;\n border-width: 0 0 1px;\n}\n.navbar-fixed-bottom {\n bottom: 0;\n margin-bottom: 0;\n border-width: 1px 0 0;\n}\n.navbar-brand {\n float: left;\n padding: 15px 15px;\n font-size: 18px;\n line-height: 20px;\n height: 50px;\n}\n.navbar-brand:hover,\n.navbar-brand:focus {\n text-decoration: none;\n}\n.navbar-brand > img {\n display: block;\n}\n@media (min-width: 768px) {\n .navbar > .container .navbar-brand,\n .navbar > .container-fluid .navbar-brand {\n margin-left: -15px;\n }\n}\n.navbar-toggle {\n position: relative;\n float: right;\n margin-right: 15px;\n padding: 9px 10px;\n margin-top: 8px;\n margin-bottom: 8px;\n background-color: transparent;\n background-image: none;\n border: 1px solid transparent;\n border-radius: 4px;\n}\n.navbar-toggle:focus {\n outline: 0;\n}\n.navbar-toggle .icon-bar {\n display: block;\n width: 22px;\n height: 2px;\n border-radius: 1px;\n}\n.navbar-toggle .icon-bar + .icon-bar {\n margin-top: 4px;\n}\n@media (min-width: 768px) {\n .navbar-toggle {\n display: none;\n }\n}\n.navbar-nav {\n margin: 7.5px -15px;\n}\n.navbar-nav > li > a {\n padding-top: 10px;\n padding-bottom: 10px;\n line-height: 20px;\n}\n@media (max-width: 767px) {\n .navbar-nav .open .dropdown-menu {\n position: static;\n float: none;\n width: auto;\n margin-top: 0;\n background-color: transparent;\n border: 0;\n box-shadow: none;\n }\n .navbar-nav .open .dropdown-menu > li > a,\n .navbar-nav .open .dropdown-menu .dropdown-header {\n padding: 5px 15px 5px 25px;\n }\n .navbar-nav .open .dropdown-menu > li > a {\n line-height: 20px;\n }\n .navbar-nav .open .dropdown-menu > li > a:hover,\n .navbar-nav .open .dropdown-menu > li > a:focus {\n background-image: none;\n }\n}\n@media (min-width: 768px) {\n .navbar-nav {\n float: left;\n margin: 0;\n }\n .navbar-nav > li {\n float: left;\n }\n .navbar-nav > li > a {\n padding-top: 15px;\n padding-bottom: 15px;\n }\n}\n.navbar-form {\n margin-left: -15px;\n margin-right: -15px;\n padding: 10px 15px;\n border-top: 1px solid transparent;\n border-bottom: 1px solid transparent;\n -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.1), 0 1px 0 rgba(255, 255, 255, 0.1);\n box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.1), 0 1px 0 rgba(255, 255, 255, 0.1);\n margin-top: 8px;\n margin-bottom: 8px;\n}\n@media (min-width: 768px) {\n .navbar-form .form-group {\n display: inline-block;\n margin-bottom: 0;\n vertical-align: middle;\n }\n .navbar-form .form-control {\n display: inline-block;\n width: auto;\n vertical-align: middle;\n }\n .navbar-form .form-control-static {\n display: inline-block;\n }\n .navbar-form .input-group {\n display: inline-table;\n vertical-align: middle;\n }\n .navbar-form .input-group .input-group-addon,\n .navbar-form .input-group .input-group-btn,\n .navbar-form .input-group .form-control {\n width: auto;\n }\n .navbar-form .input-group > .form-control {\n width: 100%;\n }\n .navbar-form .control-label {\n margin-bottom: 0;\n vertical-align: middle;\n }\n .navbar-form .radio,\n .navbar-form .checkbox {\n display: inline-block;\n margin-top: 0;\n margin-bottom: 0;\n vertical-align: middle;\n }\n .navbar-form .radio label,\n .navbar-form .checkbox label {\n padding-left: 0;\n }\n .navbar-form .radio input[type=\"radio\"],\n .navbar-form .checkbox input[type=\"checkbox\"] {\n position: relative;\n margin-left: 0;\n }\n .navbar-form .has-feedback .form-control-feedback {\n top: 0;\n }\n}\n@media (max-width: 767px) {\n .navbar-form .form-group {\n margin-bottom: 5px;\n }\n .navbar-form .form-group:last-child {\n margin-bottom: 0;\n }\n}\n@media (min-width: 768px) {\n .navbar-form {\n width: auto;\n border: 0;\n margin-left: 0;\n margin-right: 0;\n padding-top: 0;\n padding-bottom: 0;\n -webkit-box-shadow: none;\n box-shadow: none;\n }\n}\n.navbar-nav > li > .dropdown-menu {\n margin-top: 0;\n border-top-right-radius: 0;\n border-top-left-radius: 0;\n}\n.navbar-fixed-bottom .navbar-nav > li > .dropdown-menu {\n margin-bottom: 0;\n border-top-right-radius: 4px;\n border-top-left-radius: 4px;\n border-bottom-right-radius: 0;\n border-bottom-left-radius: 0;\n}\n.navbar-btn {\n margin-top: 8px;\n margin-bottom: 8px;\n}\n.navbar-btn.btn-sm {\n margin-top: 10px;\n margin-bottom: 10px;\n}\n.navbar-btn.btn-xs {\n margin-top: 14px;\n margin-bottom: 14px;\n}\n.navbar-text {\n margin-top: 15px;\n margin-bottom: 15px;\n}\n@media (min-width: 768px) {\n .navbar-text {\n float: left;\n margin-left: 15px;\n margin-right: 15px;\n }\n}\n@media (min-width: 768px) {\n .navbar-left {\n float: left !important;\n }\n .navbar-right {\n float: right !important;\n margin-right: -15px;\n }\n .navbar-right ~ .navbar-right {\n margin-right: 0;\n }\n}\n.navbar-default {\n background-color: #f8f8f8;\n border-color: #e7e7e7;\n}\n.navbar-default .navbar-brand {\n color: #777;\n}\n.navbar-default .navbar-brand:hover,\n.navbar-default .navbar-brand:focus {\n color: #5e5e5e;\n background-color: transparent;\n}\n.navbar-default .navbar-text {\n color: #777;\n}\n.navbar-default .navbar-nav > li > a {\n color: #777;\n}\n.navbar-default .navbar-nav > li > a:hover,\n.navbar-default .navbar-nav > li > a:focus {\n color: #333;\n background-color: transparent;\n}\n.navbar-default .navbar-nav > .active > a,\n.navbar-default .navbar-nav > .active > a:hover,\n.navbar-default .navbar-nav > .active > a:focus {\n color: #555;\n background-color: #e7e7e7;\n}\n.navbar-default .navbar-nav > .disabled > a,\n.navbar-default .navbar-nav > .disabled > a:hover,\n.navbar-default .navbar-nav > .disabled > a:focus {\n color: #ccc;\n background-color: transparent;\n}\n.navbar-default .navbar-toggle {\n border-color: #ddd;\n}\n.navbar-default .navbar-toggle:hover,\n.navbar-default .navbar-toggle:focus {\n background-color: #ddd;\n}\n.navbar-default .navbar-toggle .icon-bar {\n background-color: #888;\n}\n.navbar-default .navbar-collapse,\n.navbar-default .navbar-form {\n border-color: #e7e7e7;\n}\n.navbar-default .navbar-nav > .open > a,\n.navbar-default .navbar-nav > .open > a:hover,\n.navbar-default .navbar-nav > .open > a:focus {\n background-color: #e7e7e7;\n color: #555;\n}\n@media (max-width: 767px) {\n .navbar-default .navbar-nav .open .dropdown-menu > li > a {\n color: #777;\n }\n .navbar-default .navbar-nav .open .dropdown-menu > li > a:hover,\n .navbar-default .navbar-nav .open .dropdown-menu > li > a:focus {\n color: #333;\n background-color: transparent;\n }\n .navbar-default .navbar-nav .open .dropdown-menu > .active > a,\n .navbar-default .navbar-nav .open .dropdown-menu > .active > a:hover,\n .navbar-default .navbar-nav .open .dropdown-menu > .active > a:focus {\n color: #555;\n background-color: #e7e7e7;\n }\n .navbar-default .navbar-nav .open .dropdown-menu > .disabled > a,\n .navbar-default .navbar-nav .open .dropdown-menu > .disabled > a:hover,\n .navbar-default .navbar-nav .open .dropdown-menu > .disabled > a:focus {\n color: #ccc;\n background-color: transparent;\n }\n}\n.navbar-default .navbar-link {\n color: #777;\n}\n.navbar-default .navbar-link:hover {\n color: #333;\n}\n.navbar-default .btn-link {\n color: #777;\n}\n.navbar-default .btn-link:hover,\n.navbar-default .btn-link:focus {\n color: #333;\n}\n.navbar-default .btn-link[disabled]:hover,\nfieldset[disabled] .navbar-default .btn-link:hover,\n.navbar-default .btn-link[disabled]:focus,\nfieldset[disabled] .navbar-default .btn-link:focus {\n color: #ccc;\n}\n.navbar-inverse {\n background-color: #222;\n border-color: #080808;\n}\n.navbar-inverse .navbar-brand {\n color: #9d9d9d;\n}\n.navbar-inverse .navbar-brand:hover,\n.navbar-inverse .navbar-brand:focus {\n color: #fff;\n background-color: transparent;\n}\n.navbar-inverse .navbar-text {\n color: #9d9d9d;\n}\n.navbar-inverse .navbar-nav > li > a {\n color: #9d9d9d;\n}\n.navbar-inverse .navbar-nav > li > a:hover,\n.navbar-inverse .navbar-nav > li > a:focus {\n color: #fff;\n background-color: transparent;\n}\n.navbar-inverse .navbar-nav > .active > a,\n.navbar-inverse .navbar-nav > .active > a:hover,\n.navbar-inverse .navbar-nav > .active > a:focus {\n color: #fff;\n background-color: #080808;\n}\n.navbar-inverse .navbar-nav > .disabled > a,\n.navbar-inverse .navbar-nav > .disabled > a:hover,\n.navbar-inverse .navbar-nav > .disabled > a:focus {\n color: #444;\n background-color: transparent;\n}\n.navbar-inverse .navbar-toggle {\n border-color: #333;\n}\n.navbar-inverse .navbar-toggle:hover,\n.navbar-inverse .navbar-toggle:focus {\n background-color: #333;\n}\n.navbar-inverse .navbar-toggle .icon-bar {\n background-color: #fff;\n}\n.navbar-inverse .navbar-collapse,\n.navbar-inverse .navbar-form {\n border-color: #101010;\n}\n.navbar-inverse .navbar-nav > .open > a,\n.navbar-inverse .navbar-nav > .open > a:hover,\n.navbar-inverse .navbar-nav > .open > a:focus {\n background-color: #080808;\n color: #fff;\n}\n@media (max-width: 767px) {\n .navbar-inverse .navbar-nav .open .dropdown-menu > .dropdown-header {\n border-color: #080808;\n }\n .navbar-inverse .navbar-nav .open .dropdown-menu .divider {\n background-color: #080808;\n }\n .navbar-inverse .navbar-nav .open .dropdown-menu > li > a {\n color: #9d9d9d;\n }\n .navbar-inverse .navbar-nav .open .dropdown-menu > li > a:hover,\n .navbar-inverse .navbar-nav .open .dropdown-menu > li > a:focus {\n color: #fff;\n background-color: transparent;\n }\n .navbar-inverse .navbar-nav .open .dropdown-menu > .active > a,\n .navbar-inverse .navbar-nav .open .dropdown-menu > .active > a:hover,\n .navbar-inverse .navbar-nav .open .dropdown-menu > .active > a:focus {\n color: #fff;\n background-color: #080808;\n }\n .navbar-inverse .navbar-nav .open .dropdown-menu > .disabled > a,\n .navbar-inverse .navbar-nav .open .dropdown-menu > .disabled > a:hover,\n .navbar-inverse .navbar-nav .open .dropdown-menu > .disabled > a:focus {\n color: #444;\n background-color: transparent;\n }\n}\n.navbar-inverse .navbar-link {\n color: #9d9d9d;\n}\n.navbar-inverse .navbar-link:hover {\n color: #fff;\n}\n.navbar-inverse .btn-link {\n color: #9d9d9d;\n}\n.navbar-inverse .btn-link:hover,\n.navbar-inverse .btn-link:focus {\n color: #fff;\n}\n.navbar-inverse .btn-link[disabled]:hover,\nfieldset[disabled] .navbar-inverse .btn-link:hover,\n.navbar-inverse .btn-link[disabled]:focus,\nfieldset[disabled] .navbar-inverse .btn-link:focus {\n color: #444;\n}\n.breadcrumb {\n padding: 8px 15px;\n margin-bottom: 20px;\n list-style: none;\n background-color: #f5f5f5;\n border-radius: 4px;\n}\n.breadcrumb > li {\n display: inline-block;\n}\n.breadcrumb > li + li:before {\n content: \"/\\00a0\";\n padding: 0 5px;\n color: #ccc;\n}\n.breadcrumb > .active {\n color: #777777;\n}\n.pagination {\n display: inline-block;\n padding-left: 0;\n margin: 20px 0;\n border-radius: 4px;\n}\n.pagination > li {\n display: inline;\n}\n.pagination > li > a,\n.pagination > li > span {\n position: relative;\n float: left;\n padding: 6px 12px;\n line-height: 1.42857143;\n text-decoration: none;\n color: #337ab7;\n background-color: #fff;\n border: 1px solid #ddd;\n margin-left: -1px;\n}\n.pagination > li:first-child > a,\n.pagination > li:first-child > span {\n margin-left: 0;\n border-bottom-left-radius: 4px;\n border-top-left-radius: 4px;\n}\n.pagination > li:last-child > a,\n.pagination > li:last-child > span {\n border-bottom-right-radius: 4px;\n border-top-right-radius: 4px;\n}\n.pagination > li > a:hover,\n.pagination > li > span:hover,\n.pagination > li > a:focus,\n.pagination > li > span:focus {\n z-index: 2;\n color: #23527c;\n background-color: #eeeeee;\n border-color: #ddd;\n}\n.pagination > .active > a,\n.pagination > .active > span,\n.pagination > .active > a:hover,\n.pagination > .active > span:hover,\n.pagination > .active > a:focus,\n.pagination > .active > span:focus {\n z-index: 3;\n color: #fff;\n background-color: #337ab7;\n border-color: #337ab7;\n cursor: default;\n}\n.pagination > .disabled > span,\n.pagination > .disabled > span:hover,\n.pagination > .disabled > span:focus,\n.pagination > .disabled > a,\n.pagination > .disabled > a:hover,\n.pagination > .disabled > a:focus {\n color: #777777;\n background-color: #fff;\n border-color: #ddd;\n cursor: not-allowed;\n}\n.pagination-lg > li > a,\n.pagination-lg > li > span {\n padding: 10px 16px;\n font-size: 18px;\n line-height: 1.3333333;\n}\n.pagination-lg > li:first-child > a,\n.pagination-lg > li:first-child > span {\n border-bottom-left-radius: 6px;\n border-top-left-radius: 6px;\n}\n.pagination-lg > li:last-child > a,\n.pagination-lg > li:last-child > span {\n border-bottom-right-radius: 6px;\n border-top-right-radius: 6px;\n}\n.pagination-sm > li > a,\n.pagination-sm > li > span {\n padding: 5px 10px;\n font-size: 12px;\n line-height: 1.5;\n}\n.pagination-sm > li:first-child > a,\n.pagination-sm > li:first-child > span {\n border-bottom-left-radius: 3px;\n border-top-left-radius: 3px;\n}\n.pagination-sm > li:last-child > a,\n.pagination-sm > li:last-child > span {\n border-bottom-right-radius: 3px;\n border-top-right-radius: 3px;\n}\n.pager {\n padding-left: 0;\n margin: 20px 0;\n list-style: none;\n text-align: center;\n}\n.pager li {\n display: inline;\n}\n.pager li > a,\n.pager li > span {\n display: inline-block;\n padding: 5px 14px;\n background-color: #fff;\n border: 1px solid #ddd;\n border-radius: 15px;\n}\n.pager li > a:hover,\n.pager li > a:focus {\n text-decoration: none;\n background-color: #eeeeee;\n}\n.pager .next > a,\n.pager .next > span {\n float: right;\n}\n.pager .previous > a,\n.pager .previous > span {\n float: left;\n}\n.pager .disabled > a,\n.pager .disabled > a:hover,\n.pager .disabled > a:focus,\n.pager .disabled > span {\n color: #777777;\n background-color: #fff;\n cursor: not-allowed;\n}\n.label {\n display: inline;\n padding: .2em .6em .3em;\n font-size: 75%;\n font-weight: bold;\n line-height: 1;\n color: #fff;\n text-align: center;\n white-space: nowrap;\n vertical-align: baseline;\n border-radius: .25em;\n}\na.label:hover,\na.label:focus {\n color: #fff;\n text-decoration: none;\n cursor: pointer;\n}\n.label:empty {\n display: none;\n}\n.btn .label {\n position: relative;\n top: -1px;\n}\n.label-default {\n background-color: #777777;\n}\n.label-default[href]:hover,\n.label-default[href]:focus {\n background-color: #5e5e5e;\n}\n.label-primary {\n background-color: #337ab7;\n}\n.label-primary[href]:hover,\n.label-primary[href]:focus {\n background-color: #286090;\n}\n.label-success {\n background-color: #5cb85c;\n}\n.label-success[href]:hover,\n.label-success[href]:focus {\n background-color: #449d44;\n}\n.label-info {\n background-color: #5bc0de;\n}\n.label-info[href]:hover,\n.label-info[href]:focus {\n background-color: #31b0d5;\n}\n.label-warning {\n background-color: #f0ad4e;\n}\n.label-warning[href]:hover,\n.label-warning[href]:focus {\n background-color: #ec971f;\n}\n.label-danger {\n background-color: #d9534f;\n}\n.label-danger[href]:hover,\n.label-danger[href]:focus {\n background-color: #c9302c;\n}\n.badge {\n display: inline-block;\n min-width: 10px;\n padding: 3px 7px;\n font-size: 12px;\n font-weight: bold;\n color: #fff;\n line-height: 1;\n vertical-align: middle;\n white-space: nowrap;\n text-align: center;\n background-color: #777777;\n border-radius: 10px;\n}\n.badge:empty {\n display: none;\n}\n.btn .badge {\n position: relative;\n top: -1px;\n}\n.btn-xs .badge,\n.btn-group-xs > .btn .badge {\n top: 0;\n padding: 1px 5px;\n}\na.badge:hover,\na.badge:focus {\n color: #fff;\n text-decoration: none;\n cursor: pointer;\n}\n.list-group-item.active > .badge,\n.nav-pills > .active > a > .badge {\n color: #337ab7;\n background-color: #fff;\n}\n.list-group-item > .badge {\n float: right;\n}\n.list-group-item > .badge + .badge {\n margin-right: 5px;\n}\n.nav-pills > li > a > .badge {\n margin-left: 3px;\n}\n.jumbotron {\n padding-top: 30px;\n padding-bottom: 30px;\n margin-bottom: 30px;\n color: inherit;\n background-color: #eeeeee;\n}\n.jumbotron h1,\n.jumbotron .h1 {\n color: inherit;\n}\n.jumbotron p {\n margin-bottom: 15px;\n font-size: 21px;\n font-weight: 200;\n}\n.jumbotron > hr {\n border-top-color: #d5d5d5;\n}\n.container .jumbotron,\n.container-fluid .jumbotron {\n border-radius: 6px;\n padding-left: 15px;\n padding-right: 15px;\n}\n.jumbotron .container {\n max-width: 100%;\n}\n@media screen and (min-width: 768px) {\n .jumbotron {\n padding-top: 48px;\n padding-bottom: 48px;\n }\n .container .jumbotron,\n .container-fluid .jumbotron {\n padding-left: 60px;\n padding-right: 60px;\n }\n .jumbotron h1,\n .jumbotron .h1 {\n font-size: 63px;\n }\n}\n.thumbnail {\n display: block;\n padding: 4px;\n margin-bottom: 20px;\n line-height: 1.42857143;\n background-color: #fff;\n border: 1px solid #ddd;\n border-radius: 4px;\n -webkit-transition: border 0.2s ease-in-out;\n -o-transition: border 0.2s ease-in-out;\n transition: border 0.2s ease-in-out;\n}\n.thumbnail > img,\n.thumbnail a > img {\n margin-left: auto;\n margin-right: auto;\n}\na.thumbnail:hover,\na.thumbnail:focus,\na.thumbnail.active {\n border-color: #337ab7;\n}\n.thumbnail .caption {\n padding: 9px;\n color: #333333;\n}\n.alert {\n padding: 15px;\n margin-bottom: 20px;\n border: 1px solid transparent;\n border-radius: 4px;\n}\n.alert h4 {\n margin-top: 0;\n color: inherit;\n}\n.alert .alert-link {\n font-weight: bold;\n}\n.alert > p,\n.alert > ul {\n margin-bottom: 0;\n}\n.alert > p + p {\n margin-top: 5px;\n}\n.alert-dismissable,\n.alert-dismissible {\n padding-right: 35px;\n}\n.alert-dismissable .close,\n.alert-dismissible .close {\n position: relative;\n top: -2px;\n right: -21px;\n color: inherit;\n}\n.alert-success {\n background-color: #dff0d8;\n border-color: #d6e9c6;\n color: #3c763d;\n}\n.alert-success hr {\n border-top-color: #c9e2b3;\n}\n.alert-success .alert-link {\n color: #2b542c;\n}\n.alert-info {\n background-color: #d9edf7;\n border-color: #bce8f1;\n color: #31708f;\n}\n.alert-info hr {\n border-top-color: #a6e1ec;\n}\n.alert-info .alert-link {\n color: #245269;\n}\n.alert-warning {\n background-color: #fcf8e3;\n border-color: #faebcc;\n color: #8a6d3b;\n}\n.alert-warning hr {\n border-top-color: #f7e1b5;\n}\n.alert-warning .alert-link {\n color: #66512c;\n}\n.alert-danger {\n background-color: #f2dede;\n border-color: #ebccd1;\n color: #a94442;\n}\n.alert-danger hr {\n border-top-color: #e4b9c0;\n}\n.alert-danger .alert-link {\n color: #843534;\n}\n@-webkit-keyframes progress-bar-stripes {\n from {\n background-position: 40px 0;\n }\n to {\n background-position: 0 0;\n }\n}\n@keyframes progress-bar-stripes {\n from {\n background-position: 40px 0;\n }\n to {\n background-position: 0 0;\n }\n}\n.progress {\n overflow: hidden;\n height: 20px;\n margin-bottom: 20px;\n background-color: #f5f5f5;\n border-radius: 4px;\n -webkit-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.1);\n box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.1);\n}\n.progress-bar {\n float: left;\n width: 0%;\n height: 100%;\n font-size: 12px;\n line-height: 20px;\n color: #fff;\n text-align: center;\n background-color: #337ab7;\n -webkit-box-shadow: inset 0 -1px 0 rgba(0, 0, 0, 0.15);\n box-shadow: inset 0 -1px 0 rgba(0, 0, 0, 0.15);\n -webkit-transition: width 0.6s ease;\n -o-transition: width 0.6s ease;\n transition: width 0.6s ease;\n}\n.progress-striped .progress-bar,\n.progress-bar-striped {\n background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);\n background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);\n background-image: linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);\n background-size: 40px 40px;\n}\n.progress.active .progress-bar,\n.progress-bar.active {\n -webkit-animation: progress-bar-stripes 2s linear infinite;\n -o-animation: progress-bar-stripes 2s linear infinite;\n animation: progress-bar-stripes 2s linear infinite;\n}\n.progress-bar-success {\n background-color: #5cb85c;\n}\n.progress-striped .progress-bar-success {\n background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);\n background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);\n background-image: linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);\n}\n.progress-bar-info {\n background-color: #5bc0de;\n}\n.progress-striped .progress-bar-info {\n background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);\n background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);\n background-image: linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);\n}\n.progress-bar-warning {\n background-color: #f0ad4e;\n}\n.progress-striped .progress-bar-warning {\n background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);\n background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);\n background-image: linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);\n}\n.progress-bar-danger {\n background-color: #d9534f;\n}\n.progress-striped .progress-bar-danger {\n background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);\n background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);\n background-image: linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);\n}\n.media {\n margin-top: 15px;\n}\n.media:first-child {\n margin-top: 0;\n}\n.media,\n.media-body {\n zoom: 1;\n overflow: hidden;\n}\n.media-body {\n width: 10000px;\n}\n.media-object {\n display: block;\n}\n.media-object.img-thumbnail {\n max-width: none;\n}\n.media-right,\n.media > .pull-right {\n padding-left: 10px;\n}\n.media-left,\n.media > .pull-left {\n padding-right: 10px;\n}\n.media-left,\n.media-right,\n.media-body {\n display: table-cell;\n vertical-align: top;\n}\n.media-middle {\n vertical-align: middle;\n}\n.media-bottom {\n vertical-align: bottom;\n}\n.media-heading {\n margin-top: 0;\n margin-bottom: 5px;\n}\n.media-list {\n padding-left: 0;\n list-style: none;\n}\n.list-group {\n margin-bottom: 20px;\n padding-left: 0;\n}\n.list-group-item {\n position: relative;\n display: block;\n padding: 10px 15px;\n margin-bottom: -1px;\n background-color: #fff;\n border: 1px solid #ddd;\n}\n.list-group-item:first-child {\n border-top-right-radius: 4px;\n border-top-left-radius: 4px;\n}\n.list-group-item:last-child {\n margin-bottom: 0;\n border-bottom-right-radius: 4px;\n border-bottom-left-radius: 4px;\n}\na.list-group-item,\nbutton.list-group-item {\n color: #555;\n}\na.list-group-item .list-group-item-heading,\nbutton.list-group-item .list-group-item-heading {\n color: #333;\n}\na.list-group-item:hover,\nbutton.list-group-item:hover,\na.list-group-item:focus,\nbutton.list-group-item:focus {\n text-decoration: none;\n color: #555;\n background-color: #f5f5f5;\n}\nbutton.list-group-item {\n width: 100%;\n text-align: left;\n}\n.list-group-item.disabled,\n.list-group-item.disabled:hover,\n.list-group-item.disabled:focus {\n background-color: #eeeeee;\n color: #777777;\n cursor: not-allowed;\n}\n.list-group-item.disabled .list-group-item-heading,\n.list-group-item.disabled:hover .list-group-item-heading,\n.list-group-item.disabled:focus .list-group-item-heading {\n color: inherit;\n}\n.list-group-item.disabled .list-group-item-text,\n.list-group-item.disabled:hover .list-group-item-text,\n.list-group-item.disabled:focus .list-group-item-text {\n color: #777777;\n}\n.list-group-item.active,\n.list-group-item.active:hover,\n.list-group-item.active:focus {\n z-index: 2;\n color: #fff;\n background-color: #337ab7;\n border-color: #337ab7;\n}\n.list-group-item.active .list-group-item-heading,\n.list-group-item.active:hover .list-group-item-heading,\n.list-group-item.active:focus .list-group-item-heading,\n.list-group-item.active .list-group-item-heading > small,\n.list-group-item.active:hover .list-group-item-heading > small,\n.list-group-item.active:focus .list-group-item-heading > small,\n.list-group-item.active .list-group-item-heading > .small,\n.list-group-item.active:hover .list-group-item-heading > .small,\n.list-group-item.active:focus .list-group-item-heading > .small {\n color: inherit;\n}\n.list-group-item.active .list-group-item-text,\n.list-group-item.active:hover .list-group-item-text,\n.list-group-item.active:focus .list-group-item-text {\n color: #c7ddef;\n}\n.list-group-item-success {\n color: #3c763d;\n background-color: #dff0d8;\n}\na.list-group-item-success,\nbutton.list-group-item-success {\n color: #3c763d;\n}\na.list-group-item-success .list-group-item-heading,\nbutton.list-group-item-success .list-group-item-heading {\n color: inherit;\n}\na.list-group-item-success:hover,\nbutton.list-group-item-success:hover,\na.list-group-item-success:focus,\nbutton.list-group-item-success:focus {\n color: #3c763d;\n background-color: #d0e9c6;\n}\na.list-group-item-success.active,\nbutton.list-group-item-success.active,\na.list-group-item-success.active:hover,\nbutton.list-group-item-success.active:hover,\na.list-group-item-success.active:focus,\nbutton.list-group-item-success.active:focus {\n color: #fff;\n background-color: #3c763d;\n border-color: #3c763d;\n}\n.list-group-item-info {\n color: #31708f;\n background-color: #d9edf7;\n}\na.list-group-item-info,\nbutton.list-group-item-info {\n color: #31708f;\n}\na.list-group-item-info .list-group-item-heading,\nbutton.list-group-item-info .list-group-item-heading {\n color: inherit;\n}\na.list-group-item-info:hover,\nbutton.list-group-item-info:hover,\na.list-group-item-info:focus,\nbutton.list-group-item-info:focus {\n color: #31708f;\n background-color: #c4e3f3;\n}\na.list-group-item-info.active,\nbutton.list-group-item-info.active,\na.list-group-item-info.active:hover,\nbutton.list-group-item-info.active:hover,\na.list-group-item-info.active:focus,\nbutton.list-group-item-info.active:focus {\n color: #fff;\n background-color: #31708f;\n border-color: #31708f;\n}\n.list-group-item-warning {\n color: #8a6d3b;\n background-color: #fcf8e3;\n}\na.list-group-item-warning,\nbutton.list-group-item-warning {\n color: #8a6d3b;\n}\na.list-group-item-warning .list-group-item-heading,\nbutton.list-group-item-warning .list-group-item-heading {\n color: inherit;\n}\na.list-group-item-warning:hover,\nbutton.list-group-item-warning:hover,\na.list-group-item-warning:focus,\nbutton.list-group-item-warning:focus {\n color: #8a6d3b;\n background-color: #faf2cc;\n}\na.list-group-item-warning.active,\nbutton.list-group-item-warning.active,\na.list-group-item-warning.active:hover,\nbutton.list-group-item-warning.active:hover,\na.list-group-item-warning.active:focus,\nbutton.list-group-item-warning.active:focus {\n color: #fff;\n background-color: #8a6d3b;\n border-color: #8a6d3b;\n}\n.list-group-item-danger {\n color: #a94442;\n background-color: #f2dede;\n}\na.list-group-item-danger,\nbutton.list-group-item-danger {\n color: #a94442;\n}\na.list-group-item-danger .list-group-item-heading,\nbutton.list-group-item-danger .list-group-item-heading {\n color: inherit;\n}\na.list-group-item-danger:hover,\nbutton.list-group-item-danger:hover,\na.list-group-item-danger:focus,\nbutton.list-group-item-danger:focus {\n color: #a94442;\n background-color: #ebcccc;\n}\na.list-group-item-danger.active,\nbutton.list-group-item-danger.active,\na.list-group-item-danger.active:hover,\nbutton.list-group-item-danger.active:hover,\na.list-group-item-danger.active:focus,\nbutton.list-group-item-danger.active:focus {\n color: #fff;\n background-color: #a94442;\n border-color: #a94442;\n}\n.list-group-item-heading {\n margin-top: 0;\n margin-bottom: 5px;\n}\n.list-group-item-text {\n margin-bottom: 0;\n line-height: 1.3;\n}\n.panel {\n margin-bottom: 20px;\n background-color: #fff;\n border: 1px solid transparent;\n border-radius: 4px;\n -webkit-box-shadow: 0 1px 1px rgba(0, 0, 0, 0.05);\n box-shadow: 0 1px 1px rgba(0, 0, 0, 0.05);\n}\n.panel-body {\n padding: 15px;\n}\n.panel-heading {\n padding: 10px 15px;\n border-bottom: 1px solid transparent;\n border-top-right-radius: 3px;\n border-top-left-radius: 3px;\n}\n.panel-heading > .dropdown .dropdown-toggle {\n color: inherit;\n}\n.panel-title {\n margin-top: 0;\n margin-bottom: 0;\n font-size: 16px;\n color: inherit;\n}\n.panel-title > a,\n.panel-title > small,\n.panel-title > .small,\n.panel-title > small > a,\n.panel-title > .small > a {\n color: inherit;\n}\n.panel-footer {\n padding: 10px 15px;\n background-color: #f5f5f5;\n border-top: 1px solid #ddd;\n border-bottom-right-radius: 3px;\n border-bottom-left-radius: 3px;\n}\n.panel > .list-group,\n.panel > .panel-collapse > .list-group {\n margin-bottom: 0;\n}\n.panel > .list-group .list-group-item,\n.panel > .panel-collapse > .list-group .list-group-item {\n border-width: 1px 0;\n border-radius: 0;\n}\n.panel > .list-group:first-child .list-group-item:first-child,\n.panel > .panel-collapse > .list-group:first-child .list-group-item:first-child {\n border-top: 0;\n border-top-right-radius: 3px;\n border-top-left-radius: 3px;\n}\n.panel > .list-group:last-child .list-group-item:last-child,\n.panel > .panel-collapse > .list-group:last-child .list-group-item:last-child {\n border-bottom: 0;\n border-bottom-right-radius: 3px;\n border-bottom-left-radius: 3px;\n}\n.panel > .panel-heading + .panel-collapse > .list-group .list-group-item:first-child {\n border-top-right-radius: 0;\n border-top-left-radius: 0;\n}\n.panel-heading + .list-group .list-group-item:first-child {\n border-top-width: 0;\n}\n.list-group + .panel-footer {\n border-top-width: 0;\n}\n.panel > .table,\n.panel > .table-responsive > .table,\n.panel > .panel-collapse > .table {\n margin-bottom: 0;\n}\n.panel > .table caption,\n.panel > .table-responsive > .table caption,\n.panel > .panel-collapse > .table caption {\n padding-left: 15px;\n padding-right: 15px;\n}\n.panel > .table:first-child,\n.panel > .table-responsive:first-child > .table:first-child {\n border-top-right-radius: 3px;\n border-top-left-radius: 3px;\n}\n.panel > .table:first-child > thead:first-child > tr:first-child,\n.panel > .table-responsive:first-child > .table:first-child > thead:first-child > tr:first-child,\n.panel > .table:first-child > tbody:first-child > tr:first-child,\n.panel > .table-responsive:first-child > .table:first-child > tbody:first-child > tr:first-child {\n border-top-left-radius: 3px;\n border-top-right-radius: 3px;\n}\n.panel > .table:first-child > thead:first-child > tr:first-child td:first-child,\n.panel > .table-responsive:first-child > .table:first-child > thead:first-child > tr:first-child td:first-child,\n.panel > .table:first-child > tbody:first-child > tr:first-child td:first-child,\n.panel > .table-responsive:first-child > .table:first-child > tbody:first-child > tr:first-child td:first-child,\n.panel > .table:first-child > thead:first-child > tr:first-child th:first-child,\n.panel > .table-responsive:first-child > .table:first-child > thead:first-child > tr:first-child th:first-child,\n.panel > .table:first-child > tbody:first-child > tr:first-child th:first-child,\n.panel > .table-responsive:first-child > .table:first-child > tbody:first-child > tr:first-child th:first-child {\n border-top-left-radius: 3px;\n}\n.panel > .table:first-child > thead:first-child > tr:first-child td:last-child,\n.panel > .table-responsive:first-child > .table:first-child > thead:first-child > tr:first-child td:last-child,\n.panel > .table:first-child > tbody:first-child > tr:first-child td:last-child,\n.panel > .table-responsive:first-child > .table:first-child > tbody:first-child > tr:first-child td:last-child,\n.panel > .table:first-child > thead:first-child > tr:first-child th:last-child,\n.panel > .table-responsive:first-child > .table:first-child > thead:first-child > tr:first-child th:last-child,\n.panel > .table:first-child > tbody:first-child > tr:first-child th:last-child,\n.panel > .table-responsive:first-child > .table:first-child > tbody:first-child > tr:first-child th:last-child {\n border-top-right-radius: 3px;\n}\n.panel > .table:last-child,\n.panel > .table-responsive:last-child > .table:last-child {\n border-bottom-right-radius: 3px;\n border-bottom-left-radius: 3px;\n}\n.panel > .table:last-child > tbody:last-child > tr:last-child,\n.panel > .table-responsive:last-child > .table:last-child > tbody:last-child > tr:last-child,\n.panel > .table:last-child > tfoot:last-child > tr:last-child,\n.panel > .table-responsive:last-child > .table:last-child > tfoot:last-child > tr:last-child {\n border-bottom-left-radius: 3px;\n border-bottom-right-radius: 3px;\n}\n.panel > .table:last-child > tbody:last-child > tr:last-child td:first-child,\n.panel > .table-responsive:last-child > .table:last-child > tbody:last-child > tr:last-child td:first-child,\n.panel > .table:last-child > tfoot:last-child > tr:last-child td:first-child,\n.panel > .table-responsive:last-child > .table:last-child > tfoot:last-child > tr:last-child td:first-child,\n.panel > .table:last-child > tbody:last-child > tr:last-child th:first-child,\n.panel > .table-responsive:last-child > .table:last-child > tbody:last-child > tr:last-child th:first-child,\n.panel > .table:last-child > tfoot:last-child > tr:last-child th:first-child,\n.panel > .table-responsive:last-child > .table:last-child > tfoot:last-child > tr:last-child th:first-child {\n border-bottom-left-radius: 3px;\n}\n.panel > .table:last-child > tbody:last-child > tr:last-child td:last-child,\n.panel > .table-responsive:last-child > .table:last-child > tbody:last-child > tr:last-child td:last-child,\n.panel > .table:last-child > tfoot:last-child > tr:last-child td:last-child,\n.panel > .table-responsive:last-child > .table:last-child > tfoot:last-child > tr:last-child td:last-child,\n.panel > .table:last-child > tbody:last-child > tr:last-child th:last-child,\n.panel > .table-responsive:last-child > .table:last-child > tbody:last-child > tr:last-child th:last-child,\n.panel > .table:last-child > tfoot:last-child > tr:last-child th:last-child,\n.panel > .table-responsive:last-child > .table:last-child > tfoot:last-child > tr:last-child th:last-child {\n border-bottom-right-radius: 3px;\n}\n.panel > .panel-body + .table,\n.panel > .panel-body + .table-responsive,\n.panel > .table + .panel-body,\n.panel > .table-responsive + .panel-body {\n border-top: 1px solid #ddd;\n}\n.panel > .table > tbody:first-child > tr:first-child th,\n.panel > .table > tbody:first-child > tr:first-child td {\n border-top: 0;\n}\n.panel > .table-bordered,\n.panel > .table-responsive > .table-bordered {\n border: 0;\n}\n.panel > .table-bordered > thead > tr > th:first-child,\n.panel > .table-responsive > .table-bordered > thead > tr > th:first-child,\n.panel > .table-bordered > tbody > tr > th:first-child,\n.panel > .table-responsive > .table-bordered > tbody > tr > th:first-child,\n.panel > .table-bordered > tfoot > tr > th:first-child,\n.panel > .table-responsive > .table-bordered > tfoot > tr > th:first-child,\n.panel > .table-bordered > thead > tr > td:first-child,\n.panel > .table-responsive > .table-bordered > thead > tr > td:first-child,\n.panel > .table-bordered > tbody > tr > td:first-child,\n.panel > .table-responsive > .table-bordered > tbody > tr > td:first-child,\n.panel > .table-bordered > tfoot > tr > td:first-child,\n.panel > .table-responsive > .table-bordered > tfoot > tr > td:first-child {\n border-left: 0;\n}\n.panel > .table-bordered > thead > tr > th:last-child,\n.panel > .table-responsive > .table-bordered > thead > tr > th:last-child,\n.panel > .table-bordered > tbody > tr > th:last-child,\n.panel > .table-responsive > .table-bordered > tbody > tr > th:last-child,\n.panel > .table-bordered > tfoot > tr > th:last-child,\n.panel > .table-responsive > .table-bordered > tfoot > tr > th:last-child,\n.panel > .table-bordered > thead > tr > td:last-child,\n.panel > .table-responsive > .table-bordered > thead > tr > td:last-child,\n.panel > .table-bordered > tbody > tr > td:last-child,\n.panel > .table-responsive > .table-bordered > tbody > tr > td:last-child,\n.panel > .table-bordered > tfoot > tr > td:last-child,\n.panel > .table-responsive > .table-bordered > tfoot > tr > td:last-child {\n border-right: 0;\n}\n.panel > .table-bordered > thead > tr:first-child > td,\n.panel > .table-responsive > .table-bordered > thead > tr:first-child > td,\n.panel > .table-bordered > tbody > tr:first-child > td,\n.panel > .table-responsive > .table-bordered > tbody > tr:first-child > td,\n.panel > .table-bordered > thead > tr:first-child > th,\n.panel > .table-responsive > .table-bordered > thead > tr:first-child > th,\n.panel > .table-bordered > tbody > tr:first-child > th,\n.panel > .table-responsive > .table-bordered > tbody > tr:first-child > th {\n border-bottom: 0;\n}\n.panel > .table-bordered > tbody > tr:last-child > td,\n.panel > .table-responsive > .table-bordered > tbody > tr:last-child > td,\n.panel > .table-bordered > tfoot > tr:last-child > td,\n.panel > .table-responsive > .table-bordered > tfoot > tr:last-child > td,\n.panel > .table-bordered > tbody > tr:last-child > th,\n.panel > .table-responsive > .table-bordered > tbody > tr:last-child > th,\n.panel > .table-bordered > tfoot > tr:last-child > th,\n.panel > .table-responsive > .table-bordered > tfoot > tr:last-child > th {\n border-bottom: 0;\n}\n.panel > .table-responsive {\n border: 0;\n margin-bottom: 0;\n}\n.panel-group {\n margin-bottom: 20px;\n}\n.panel-group .panel {\n margin-bottom: 0;\n border-radius: 4px;\n}\n.panel-group .panel + .panel {\n margin-top: 5px;\n}\n.panel-group .panel-heading {\n border-bottom: 0;\n}\n.panel-group .panel-heading + .panel-collapse > .panel-body,\n.panel-group .panel-heading + .panel-collapse > .list-group {\n border-top: 1px solid #ddd;\n}\n.panel-group .panel-footer {\n border-top: 0;\n}\n.panel-group .panel-footer + .panel-collapse .panel-body {\n border-bottom: 1px solid #ddd;\n}\n.panel-default {\n border-color: #ddd;\n}\n.panel-default > .panel-heading {\n color: #333333;\n background-color: #f5f5f5;\n border-color: #ddd;\n}\n.panel-default > .panel-heading + .panel-collapse > .panel-body {\n border-top-color: #ddd;\n}\n.panel-default > .panel-heading .badge {\n color: #f5f5f5;\n background-color: #333333;\n}\n.panel-default > .panel-footer + .panel-collapse > .panel-body {\n border-bottom-color: #ddd;\n}\n.panel-primary {\n border-color: #337ab7;\n}\n.panel-primary > .panel-heading {\n color: #fff;\n background-color: #337ab7;\n border-color: #337ab7;\n}\n.panel-primary > .panel-heading + .panel-collapse > .panel-body {\n border-top-color: #337ab7;\n}\n.panel-primary > .panel-heading .badge {\n color: #337ab7;\n background-color: #fff;\n}\n.panel-primary > .panel-footer + .panel-collapse > .panel-body {\n border-bottom-color: #337ab7;\n}\n.panel-success {\n border-color: #d6e9c6;\n}\n.panel-success > .panel-heading {\n color: #3c763d;\n background-color: #dff0d8;\n border-color: #d6e9c6;\n}\n.panel-success > .panel-heading + .panel-collapse > .panel-body {\n border-top-color: #d6e9c6;\n}\n.panel-success > .panel-heading .badge {\n color: #dff0d8;\n background-color: #3c763d;\n}\n.panel-success > .panel-footer + .panel-collapse > .panel-body {\n border-bottom-color: #d6e9c6;\n}\n.panel-info {\n border-color: #bce8f1;\n}\n.panel-info > .panel-heading {\n color: #31708f;\n background-color: #d9edf7;\n border-color: #bce8f1;\n}\n.panel-info > .panel-heading + .panel-collapse > .panel-body {\n border-top-color: #bce8f1;\n}\n.panel-info > .panel-heading .badge {\n color: #d9edf7;\n background-color: #31708f;\n}\n.panel-info > .panel-footer + .panel-collapse > .panel-body {\n border-bottom-color: #bce8f1;\n}\n.panel-warning {\n border-color: #faebcc;\n}\n.panel-warning > .panel-heading {\n color: #8a6d3b;\n background-color: #fcf8e3;\n border-color: #faebcc;\n}\n.panel-warning > .panel-heading + .panel-collapse > .panel-body {\n border-top-color: #faebcc;\n}\n.panel-warning > .panel-heading .badge {\n color: #fcf8e3;\n background-color: #8a6d3b;\n}\n.panel-warning > .panel-footer + .panel-collapse > .panel-body {\n border-bottom-color: #faebcc;\n}\n.panel-danger {\n border-color: #ebccd1;\n}\n.panel-danger > .panel-heading {\n color: #a94442;\n background-color: #f2dede;\n border-color: #ebccd1;\n}\n.panel-danger > .panel-heading + .panel-collapse > .panel-body {\n border-top-color: #ebccd1;\n}\n.panel-danger > .panel-heading .badge {\n color: #f2dede;\n background-color: #a94442;\n}\n.panel-danger > .panel-footer + .panel-collapse > .panel-body {\n border-bottom-color: #ebccd1;\n}\n.embed-responsive {\n position: relative;\n display: block;\n height: 0;\n padding: 0;\n overflow: hidden;\n}\n.embed-responsive .embed-responsive-item,\n.embed-responsive iframe,\n.embed-responsive embed,\n.embed-responsive object,\n.embed-responsive video {\n position: absolute;\n top: 0;\n left: 0;\n bottom: 0;\n height: 100%;\n width: 100%;\n border: 0;\n}\n.embed-responsive-16by9 {\n padding-bottom: 56.25%;\n}\n.embed-responsive-4by3 {\n padding-bottom: 75%;\n}\n.well {\n min-height: 20px;\n padding: 19px;\n margin-bottom: 20px;\n background-color: #f5f5f5;\n border: 1px solid #e3e3e3;\n border-radius: 4px;\n -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.05);\n box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.05);\n}\n.well blockquote {\n border-color: #ddd;\n border-color: rgba(0, 0, 0, 0.15);\n}\n.well-lg {\n padding: 24px;\n border-radius: 6px;\n}\n.well-sm {\n padding: 9px;\n border-radius: 3px;\n}\n.close {\n float: right;\n font-size: 21px;\n font-weight: bold;\n line-height: 1;\n color: #000;\n text-shadow: 0 1px 0 #fff;\n opacity: 0.2;\n filter: alpha(opacity=20);\n}\n.close:hover,\n.close:focus {\n color: #000;\n text-decoration: none;\n cursor: pointer;\n opacity: 0.5;\n filter: alpha(opacity=50);\n}\nbutton.close {\n padding: 0;\n cursor: pointer;\n background: transparent;\n border: 0;\n -webkit-appearance: none;\n}\n.modal-open {\n overflow: hidden;\n}\n.modal {\n display: none;\n overflow: hidden;\n position: fixed;\n top: 0;\n right: 0;\n bottom: 0;\n left: 0;\n z-index: 1050;\n -webkit-overflow-scrolling: touch;\n outline: 0;\n}\n.modal.fade .modal-dialog {\n -webkit-transform: translate(0, -25%);\n -ms-transform: translate(0, -25%);\n -o-transform: translate(0, -25%);\n transform: translate(0, -25%);\n -webkit-transition: -webkit-transform 0.3s ease-out;\n -moz-transition: -moz-transform 0.3s ease-out;\n -o-transition: -o-transform 0.3s ease-out;\n transition: transform 0.3s ease-out;\n}\n.modal.in .modal-dialog {\n -webkit-transform: translate(0, 0);\n -ms-transform: translate(0, 0);\n -o-transform: translate(0, 0);\n transform: translate(0, 0);\n}\n.modal-open .modal {\n overflow-x: hidden;\n overflow-y: auto;\n}\n.modal-dialog {\n position: relative;\n width: auto;\n margin: 10px;\n}\n.modal-content {\n position: relative;\n background-color: #fff;\n border: 1px solid #999;\n border: 1px solid rgba(0, 0, 0, 0.2);\n border-radius: 6px;\n -webkit-box-shadow: 0 3px 9px rgba(0, 0, 0, 0.5);\n box-shadow: 0 3px 9px rgba(0, 0, 0, 0.5);\n background-clip: padding-box;\n outline: 0;\n}\n.modal-backdrop {\n position: fixed;\n top: 0;\n right: 0;\n bottom: 0;\n left: 0;\n z-index: 1040;\n background-color: #000;\n}\n.modal-backdrop.fade {\n opacity: 0;\n filter: alpha(opacity=0);\n}\n.modal-backdrop.in {\n opacity: 0.5;\n filter: alpha(opacity=50);\n}\n.modal-header {\n padding: 15px;\n border-bottom: 1px solid #e5e5e5;\n}\n.modal-header .close {\n margin-top: -2px;\n}\n.modal-title {\n margin: 0;\n line-height: 1.42857143;\n}\n.modal-body {\n position: relative;\n padding: 15px;\n}\n.modal-footer {\n padding: 15px;\n text-align: right;\n border-top: 1px solid #e5e5e5;\n}\n.modal-footer .btn + .btn {\n margin-left: 5px;\n margin-bottom: 0;\n}\n.modal-footer .btn-group .btn + .btn {\n margin-left: -1px;\n}\n.modal-footer .btn-block + .btn-block {\n margin-left: 0;\n}\n.modal-scrollbar-measure {\n position: absolute;\n top: -9999px;\n width: 50px;\n height: 50px;\n overflow: scroll;\n}\n@media (min-width: 768px) {\n .modal-dialog {\n width: 600px;\n margin: 30px auto;\n }\n .modal-content {\n -webkit-box-shadow: 0 5px 15px rgba(0, 0, 0, 0.5);\n box-shadow: 0 5px 15px rgba(0, 0, 0, 0.5);\n }\n .modal-sm {\n width: 300px;\n }\n}\n@media (min-width: 992px) {\n .modal-lg {\n width: 900px;\n }\n}\n.tooltip {\n position: absolute;\n z-index: 1070;\n display: block;\n font-family: \"Helvetica Neue\", Helvetica, Arial, sans-serif;\n font-style: normal;\n font-weight: normal;\n letter-spacing: normal;\n line-break: auto;\n line-height: 1.42857143;\n text-align: left;\n text-align: start;\n text-decoration: none;\n text-shadow: none;\n text-transform: none;\n white-space: normal;\n word-break: normal;\n word-spacing: normal;\n word-wrap: normal;\n font-size: 12px;\n opacity: 0;\n filter: alpha(opacity=0);\n}\n.tooltip.in {\n opacity: 0.9;\n filter: alpha(opacity=90);\n}\n.tooltip.top {\n margin-top: -3px;\n padding: 5px 0;\n}\n.tooltip.right {\n margin-left: 3px;\n padding: 0 5px;\n}\n.tooltip.bottom {\n margin-top: 3px;\n padding: 5px 0;\n}\n.tooltip.left {\n margin-left: -3px;\n padding: 0 5px;\n}\n.tooltip-inner {\n max-width: 200px;\n padding: 3px 8px;\n color: #fff;\n text-align: center;\n background-color: #000;\n border-radius: 4px;\n}\n.tooltip-arrow {\n position: absolute;\n width: 0;\n height: 0;\n border-color: transparent;\n border-style: solid;\n}\n.tooltip.top .tooltip-arrow {\n bottom: 0;\n left: 50%;\n margin-left: -5px;\n border-width: 5px 5px 0;\n border-top-color: #000;\n}\n.tooltip.top-left .tooltip-arrow {\n bottom: 0;\n right: 5px;\n margin-bottom: -5px;\n border-width: 5px 5px 0;\n border-top-color: #000;\n}\n.tooltip.top-right .tooltip-arrow {\n bottom: 0;\n left: 5px;\n margin-bottom: -5px;\n border-width: 5px 5px 0;\n border-top-color: #000;\n}\n.tooltip.right .tooltip-arrow {\n top: 50%;\n left: 0;\n margin-top: -5px;\n border-width: 5px 5px 5px 0;\n border-right-color: #000;\n}\n.tooltip.left .tooltip-arrow {\n top: 50%;\n right: 0;\n margin-top: -5px;\n border-width: 5px 0 5px 5px;\n border-left-color: #000;\n}\n.tooltip.bottom .tooltip-arrow {\n top: 0;\n left: 50%;\n margin-left: -5px;\n border-width: 0 5px 5px;\n border-bottom-color: #000;\n}\n.tooltip.bottom-left .tooltip-arrow {\n top: 0;\n right: 5px;\n margin-top: -5px;\n border-width: 0 5px 5px;\n border-bottom-color: #000;\n}\n.tooltip.bottom-right .tooltip-arrow {\n top: 0;\n left: 5px;\n margin-top: -5px;\n border-width: 0 5px 5px;\n border-bottom-color: #000;\n}\n.popover {\n position: absolute;\n top: 0;\n left: 0;\n z-index: 1060;\n display: none;\n max-width: 276px;\n padding: 1px;\n font-family: \"Helvetica Neue\", Helvetica, Arial, sans-serif;\n font-style: normal;\n font-weight: normal;\n letter-spacing: normal;\n line-break: auto;\n line-height: 1.42857143;\n text-align: left;\n text-align: start;\n text-decoration: none;\n text-shadow: none;\n text-transform: none;\n white-space: normal;\n word-break: normal;\n word-spacing: normal;\n word-wrap: normal;\n font-size: 14px;\n background-color: #fff;\n background-clip: padding-box;\n border: 1px solid #ccc;\n border: 1px solid rgba(0, 0, 0, 0.2);\n border-radius: 6px;\n -webkit-box-shadow: 0 5px 10px rgba(0, 0, 0, 0.2);\n box-shadow: 0 5px 10px rgba(0, 0, 0, 0.2);\n}\n.popover.top {\n margin-top: -10px;\n}\n.popover.right {\n margin-left: 10px;\n}\n.popover.bottom {\n margin-top: 10px;\n}\n.popover.left {\n margin-left: -10px;\n}\n.popover-title {\n margin: 0;\n padding: 8px 14px;\n font-size: 14px;\n background-color: #f7f7f7;\n border-bottom: 1px solid #ebebeb;\n border-radius: 5px 5px 0 0;\n}\n.popover-content {\n padding: 9px 14px;\n}\n.popover > .arrow,\n.popover > .arrow:after {\n position: absolute;\n display: block;\n width: 0;\n height: 0;\n border-color: transparent;\n border-style: solid;\n}\n.popover > .arrow {\n border-width: 11px;\n}\n.popover > .arrow:after {\n border-width: 10px;\n content: \"\";\n}\n.popover.top > .arrow {\n left: 50%;\n margin-left: -11px;\n border-bottom-width: 0;\n border-top-color: #999999;\n border-top-color: rgba(0, 0, 0, 0.25);\n bottom: -11px;\n}\n.popover.top > .arrow:after {\n content: \" \";\n bottom: 1px;\n margin-left: -10px;\n border-bottom-width: 0;\n border-top-color: #fff;\n}\n.popover.right > .arrow {\n top: 50%;\n left: -11px;\n margin-top: -11px;\n border-left-width: 0;\n border-right-color: #999999;\n border-right-color: rgba(0, 0, 0, 0.25);\n}\n.popover.right > .arrow:after {\n content: \" \";\n left: 1px;\n bottom: -10px;\n border-left-width: 0;\n border-right-color: #fff;\n}\n.popover.bottom > .arrow {\n left: 50%;\n margin-left: -11px;\n border-top-width: 0;\n border-bottom-color: #999999;\n border-bottom-color: rgba(0, 0, 0, 0.25);\n top: -11px;\n}\n.popover.bottom > .arrow:after {\n content: \" \";\n top: 1px;\n margin-left: -10px;\n border-top-width: 0;\n border-bottom-color: #fff;\n}\n.popover.left > .arrow {\n top: 50%;\n right: -11px;\n margin-top: -11px;\n border-right-width: 0;\n border-left-color: #999999;\n border-left-color: rgba(0, 0, 0, 0.25);\n}\n.popover.left > .arrow:after {\n content: \" \";\n right: 1px;\n border-right-width: 0;\n border-left-color: #fff;\n bottom: -10px;\n}\n.carousel {\n position: relative;\n}\n.carousel-inner {\n position: relative;\n overflow: hidden;\n width: 100%;\n}\n.carousel-inner > .item {\n display: none;\n position: relative;\n -webkit-transition: 0.6s ease-in-out left;\n -o-transition: 0.6s ease-in-out left;\n transition: 0.6s ease-in-out left;\n}\n.carousel-inner > .item > img,\n.carousel-inner > .item > a > img {\n line-height: 1;\n}\n@media all and (transform-3d), (-webkit-transform-3d) {\n .carousel-inner > .item {\n -webkit-transition: -webkit-transform 0.6s ease-in-out;\n -moz-transition: -moz-transform 0.6s ease-in-out;\n -o-transition: -o-transform 0.6s ease-in-out;\n transition: transform 0.6s ease-in-out;\n -webkit-backface-visibility: hidden;\n -moz-backface-visibility: hidden;\n backface-visibility: hidden;\n -webkit-perspective: 1000px;\n -moz-perspective: 1000px;\n perspective: 1000px;\n }\n .carousel-inner > .item.next,\n .carousel-inner > .item.active.right {\n -webkit-transform: translate3d(100%, 0, 0);\n transform: translate3d(100%, 0, 0);\n left: 0;\n }\n .carousel-inner > .item.prev,\n .carousel-inner > .item.active.left {\n -webkit-transform: translate3d(-100%, 0, 0);\n transform: translate3d(-100%, 0, 0);\n left: 0;\n }\n .carousel-inner > .item.next.left,\n .carousel-inner > .item.prev.right,\n .carousel-inner > .item.active {\n -webkit-transform: translate3d(0, 0, 0);\n transform: translate3d(0, 0, 0);\n left: 0;\n }\n}\n.carousel-inner > .active,\n.carousel-inner > .next,\n.carousel-inner > .prev {\n display: block;\n}\n.carousel-inner > .active {\n left: 0;\n}\n.carousel-inner > .next,\n.carousel-inner > .prev {\n position: absolute;\n top: 0;\n width: 100%;\n}\n.carousel-inner > .next {\n left: 100%;\n}\n.carousel-inner > .prev {\n left: -100%;\n}\n.carousel-inner > .next.left,\n.carousel-inner > .prev.right {\n left: 0;\n}\n.carousel-inner > .active.left {\n left: -100%;\n}\n.carousel-inner > .active.right {\n left: 100%;\n}\n.carousel-control {\n position: absolute;\n top: 0;\n left: 0;\n bottom: 0;\n width: 15%;\n opacity: 0.5;\n filter: alpha(opacity=50);\n font-size: 20px;\n color: #fff;\n text-align: center;\n text-shadow: 0 1px 2px rgba(0, 0, 0, 0.6);\n background-color: rgba(0, 0, 0, 0);\n}\n.carousel-control.left {\n background-image: -webkit-linear-gradient(left, rgba(0, 0, 0, 0.5) 0%, rgba(0, 0, 0, 0.0001) 100%);\n background-image: -o-linear-gradient(left, rgba(0, 0, 0, 0.5) 0%, rgba(0, 0, 0, 0.0001) 100%);\n background-image: linear-gradient(to right, rgba(0, 0, 0, 0.5) 0%, rgba(0, 0, 0, 0.0001) 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#80000000', endColorstr='#00000000', GradientType=1);\n}\n.carousel-control.right {\n left: auto;\n right: 0;\n background-image: -webkit-linear-gradient(left, rgba(0, 0, 0, 0.0001) 0%, rgba(0, 0, 0, 0.5) 100%);\n background-image: -o-linear-gradient(left, rgba(0, 0, 0, 0.0001) 0%, rgba(0, 0, 0, 0.5) 100%);\n background-image: linear-gradient(to right, rgba(0, 0, 0, 0.0001) 0%, rgba(0, 0, 0, 0.5) 100%);\n background-repeat: repeat-x;\n filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#00000000', endColorstr='#80000000', GradientType=1);\n}\n.carousel-control:hover,\n.carousel-control:focus {\n outline: 0;\n color: #fff;\n text-decoration: none;\n opacity: 0.9;\n filter: alpha(opacity=90);\n}\n.carousel-control .icon-prev,\n.carousel-control .icon-next,\n.carousel-control .glyphicon-chevron-left,\n.carousel-control .glyphicon-chevron-right {\n position: absolute;\n top: 50%;\n margin-top: -10px;\n z-index: 5;\n display: inline-block;\n}\n.carousel-control .icon-prev,\n.carousel-control .glyphicon-chevron-left {\n left: 50%;\n margin-left: -10px;\n}\n.carousel-control .icon-next,\n.carousel-control .glyphicon-chevron-right {\n right: 50%;\n margin-right: -10px;\n}\n.carousel-control .icon-prev,\n.carousel-control .icon-next {\n width: 20px;\n height: 20px;\n line-height: 1;\n font-family: serif;\n}\n.carousel-control .icon-prev:before {\n content: '\\2039';\n}\n.carousel-control .icon-next:before {\n content: '\\203a';\n}\n.carousel-indicators {\n position: absolute;\n bottom: 10px;\n left: 50%;\n z-index: 15;\n width: 60%;\n margin-left: -30%;\n padding-left: 0;\n list-style: none;\n text-align: center;\n}\n.carousel-indicators li {\n display: inline-block;\n width: 10px;\n height: 10px;\n margin: 1px;\n text-indent: -999px;\n border: 1px solid #fff;\n border-radius: 10px;\n cursor: pointer;\n background-color: #000 \\9;\n background-color: rgba(0, 0, 0, 0);\n}\n.carousel-indicators .active {\n margin: 0;\n width: 12px;\n height: 12px;\n background-color: #fff;\n}\n.carousel-caption {\n position: absolute;\n left: 15%;\n right: 15%;\n bottom: 20px;\n z-index: 10;\n padding-top: 20px;\n padding-bottom: 20px;\n color: #fff;\n text-align: center;\n text-shadow: 0 1px 2px rgba(0, 0, 0, 0.6);\n}\n.carousel-caption .btn {\n text-shadow: none;\n}\n@media screen and (min-width: 768px) {\n .carousel-control .glyphicon-chevron-left,\n .carousel-control .glyphicon-chevron-right,\n .carousel-control .icon-prev,\n .carousel-control .icon-next {\n width: 30px;\n height: 30px;\n margin-top: -10px;\n font-size: 30px;\n }\n .carousel-control .glyphicon-chevron-left,\n .carousel-control .icon-prev {\n margin-left: -10px;\n }\n .carousel-control .glyphicon-chevron-right,\n .carousel-control .icon-next {\n margin-right: -10px;\n }\n .carousel-caption {\n left: 20%;\n right: 20%;\n padding-bottom: 30px;\n }\n .carousel-indicators {\n bottom: 20px;\n }\n}\n.clearfix:before,\n.clearfix:after,\n.dl-horizontal dd:before,\n.dl-horizontal dd:after,\n.container:before,\n.container:after,\n.container-fluid:before,\n.container-fluid:after,\n.row:before,\n.row:after,\n.form-horizontal .form-group:before,\n.form-horizontal .form-group:after,\n.btn-toolbar:before,\n.btn-toolbar:after,\n.btn-group-vertical > .btn-group:before,\n.btn-group-vertical > .btn-group:after,\n.nav:before,\n.nav:after,\n.navbar:before,\n.navbar:after,\n.navbar-header:before,\n.navbar-header:after,\n.navbar-collapse:before,\n.navbar-collapse:after,\n.pager:before,\n.pager:after,\n.panel-body:before,\n.panel-body:after,\n.modal-header:before,\n.modal-header:after,\n.modal-footer:before,\n.modal-footer:after {\n content: \" \";\n display: table;\n}\n.clearfix:after,\n.dl-horizontal dd:after,\n.container:after,\n.container-fluid:after,\n.row:after,\n.form-horizontal .form-group:after,\n.btn-toolbar:after,\n.btn-group-vertical > .btn-group:after,\n.nav:after,\n.navbar:after,\n.navbar-header:after,\n.navbar-collapse:after,\n.pager:after,\n.panel-body:after,\n.modal-header:after,\n.modal-footer:after {\n clear: both;\n}\n.center-block {\n display: block;\n margin-left: auto;\n margin-right: auto;\n}\n.pull-right {\n float: right !important;\n}\n.pull-left {\n float: left !important;\n}\n.hide {\n display: none !important;\n}\n.show {\n display: block !important;\n}\n.invisible {\n visibility: hidden;\n}\n.text-hide {\n font: 0/0 a;\n color: transparent;\n text-shadow: none;\n background-color: transparent;\n border: 0;\n}\n.hidden {\n display: none !important;\n}\n.affix {\n position: fixed;\n}\n@-ms-viewport {\n width: device-width;\n}\n.visible-xs,\n.visible-sm,\n.visible-md,\n.visible-lg {\n display: none !important;\n}\n.visible-xs-block,\n.visible-xs-inline,\n.visible-xs-inline-block,\n.visible-sm-block,\n.visible-sm-inline,\n.visible-sm-inline-block,\n.visible-md-block,\n.visible-md-inline,\n.visible-md-inline-block,\n.visible-lg-block,\n.visible-lg-inline,\n.visible-lg-inline-block {\n display: none !important;\n}\n@media (max-width: 767px) {\n .visible-xs {\n display: block !important;\n }\n table.visible-xs {\n display: table !important;\n }\n tr.visible-xs {\n display: table-row !important;\n }\n th.visible-xs,\n td.visible-xs {\n display: table-cell !important;\n }\n}\n@media (max-width: 767px) {\n .visible-xs-block {\n display: block !important;\n }\n}\n@media (max-width: 767px) {\n .visible-xs-inline {\n display: inline !important;\n }\n}\n@media (max-width: 767px) {\n .visible-xs-inline-block {\n display: inline-block !important;\n }\n}\n@media (min-width: 768px) and (max-width: 991px) {\n .visible-sm {\n display: block !important;\n }\n table.visible-sm {\n display: table !important;\n }\n tr.visible-sm {\n display: table-row !important;\n }\n th.visible-sm,\n td.visible-sm {\n display: table-cell !important;\n }\n}\n@media (min-width: 768px) and (max-width: 991px) {\n .visible-sm-block {\n display: block !important;\n }\n}\n@media (min-width: 768px) and (max-width: 991px) {\n .visible-sm-inline {\n display: inline !important;\n }\n}\n@media (min-width: 768px) and (max-width: 991px) {\n .visible-sm-inline-block {\n display: inline-block !important;\n }\n}\n@media (min-width: 992px) and (max-width: 1199px) {\n .visible-md {\n display: block !important;\n }\n table.visible-md {\n display: table !important;\n }\n tr.visible-md {\n display: table-row !important;\n }\n th.visible-md,\n td.visible-md {\n display: table-cell !important;\n }\n}\n@media (min-width: 992px) and (max-width: 1199px) {\n .visible-md-block {\n display: block !important;\n }\n}\n@media (min-width: 992px) and (max-width: 1199px) {\n .visible-md-inline {\n display: inline !important;\n }\n}\n@media (min-width: 992px) and (max-width: 1199px) {\n .visible-md-inline-block {\n display: inline-block !important;\n }\n}\n@media (min-width: 1200px) {\n .visible-lg {\n display: block !important;\n }\n table.visible-lg {\n display: table !important;\n }\n tr.visible-lg {\n display: table-row !important;\n }\n th.visible-lg,\n td.visible-lg {\n display: table-cell !important;\n }\n}\n@media (min-width: 1200px) {\n .visible-lg-block {\n display: block !important;\n }\n}\n@media (min-width: 1200px) {\n .visible-lg-inline {\n display: inline !important;\n }\n}\n@media (min-width: 1200px) {\n .visible-lg-inline-block {\n display: inline-block !important;\n }\n}\n@media (max-width: 767px) {\n .hidden-xs {\n display: none !important;\n }\n}\n@media (min-width: 768px) and (max-width: 991px) {\n .hidden-sm {\n display: none !important;\n }\n}\n@media (min-width: 992px) and (max-width: 1199px) {\n .hidden-md {\n display: none !important;\n }\n}\n@media (min-width: 1200px) {\n .hidden-lg {\n display: none !important;\n }\n}\n.visible-print {\n display: none !important;\n}\n@media print {\n .visible-print {\n display: block !important;\n }\n table.visible-print {\n display: table !important;\n }\n tr.visible-print {\n display: table-row !important;\n }\n th.visible-print,\n td.visible-print {\n display: table-cell !important;\n }\n}\n.visible-print-block {\n display: none !important;\n}\n@media print {\n .visible-print-block {\n display: block !important;\n }\n}\n.visible-print-inline {\n display: none !important;\n}\n@media print {\n .visible-print-inline {\n display: inline !important;\n }\n}\n.visible-print-inline-block {\n display: none !important;\n}\n@media print {\n .visible-print-inline-block {\n display: inline-block !important;\n }\n}\n@media print {\n .hidden-print {\n display: none !important;\n }\n}\n/*# sourceMappingURL=bootstrap.css.map */","/*! normalize.css v3.0.3 | MIT License | github.com/necolas/normalize.css */\n\n//\n// 1. Set default font family to sans-serif.\n// 2. Prevent iOS and IE text size adjust after device orientation change,\n// without disabling user zoom.\n//\n\nhtml {\n font-family: sans-serif; // 1\n -ms-text-size-adjust: 100%; // 2\n -webkit-text-size-adjust: 100%; // 2\n}\n\n//\n// Remove default margin.\n//\n\nbody {\n margin: 0;\n}\n\n// HTML5 display definitions\n// ==========================================================================\n\n//\n// Correct `block` display not defined for any HTML5 element in IE 8/9.\n// Correct `block` display not defined for `details` or `summary` in IE 10/11\n// and Firefox.\n// Correct `block` display not defined for `main` in IE 11.\n//\n\narticle,\naside,\ndetails,\nfigcaption,\nfigure,\nfooter,\nheader,\nhgroup,\nmain,\nmenu,\nnav,\nsection,\nsummary {\n display: block;\n}\n\n//\n// 1. Correct `inline-block` display not defined in IE 8/9.\n// 2. Normalize vertical alignment of `progress` in Chrome, Firefox, and Opera.\n//\n\naudio,\ncanvas,\nprogress,\nvideo {\n display: inline-block; // 1\n vertical-align: baseline; // 2\n}\n\n//\n// Prevent modern browsers from displaying `audio` without controls.\n// Remove excess height in iOS 5 devices.\n//\n\naudio:not([controls]) {\n display: none;\n height: 0;\n}\n\n//\n// Address `[hidden]` styling not present in IE 8/9/10.\n// Hide the `template` element in IE 8/9/10/11, Safari, and Firefox < 22.\n//\n\n[hidden],\ntemplate {\n display: none;\n}\n\n// Links\n// ==========================================================================\n\n//\n// Remove the gray background color from active links in IE 10.\n//\n\na {\n background-color: transparent;\n}\n\n//\n// Improve readability of focused elements when they are also in an\n// active/hover state.\n//\n\na:active,\na:hover {\n outline: 0;\n}\n\n// Text-level semantics\n// ==========================================================================\n\n//\n// Address styling not present in IE 8/9/10/11, Safari, and Chrome.\n//\n\nabbr[title] {\n border-bottom: 1px dotted;\n}\n\n//\n// Address style set to `bolder` in Firefox 4+, Safari, and Chrome.\n//\n\nb,\nstrong {\n font-weight: bold;\n}\n\n//\n// Address styling not present in Safari and Chrome.\n//\n\ndfn {\n font-style: italic;\n}\n\n//\n// Address variable `h1` font-size and margin within `section` and `article`\n// contexts in Firefox 4+, Safari, and Chrome.\n//\n\nh1 {\n font-size: 2em;\n margin: 0.67em 0;\n}\n\n//\n// Address styling not present in IE 8/9.\n//\n\nmark {\n background: #ff0;\n color: #000;\n}\n\n//\n// Address inconsistent and variable font size in all browsers.\n//\n\nsmall {\n font-size: 80%;\n}\n\n//\n// Prevent `sub` and `sup` affecting `line-height` in all browsers.\n//\n\nsub,\nsup {\n font-size: 75%;\n line-height: 0;\n position: relative;\n vertical-align: baseline;\n}\n\nsup {\n top: -0.5em;\n}\n\nsub {\n bottom: -0.25em;\n}\n\n// Embedded content\n// ==========================================================================\n\n//\n// Remove border when inside `a` element in IE 8/9/10.\n//\n\nimg {\n border: 0;\n}\n\n//\n// Correct overflow not hidden in IE 9/10/11.\n//\n\nsvg:not(:root) {\n overflow: hidden;\n}\n\n// Grouping content\n// ==========================================================================\n\n//\n// Address margin not present in IE 8/9 and Safari.\n//\n\nfigure {\n margin: 1em 40px;\n}\n\n//\n// Address differences between Firefox and other browsers.\n//\n\nhr {\n box-sizing: content-box;\n height: 0;\n}\n\n//\n// Contain overflow in all browsers.\n//\n\npre {\n overflow: auto;\n}\n\n//\n// Address odd `em`-unit font size rendering in all browsers.\n//\n\ncode,\nkbd,\npre,\nsamp {\n font-family: monospace, monospace;\n font-size: 1em;\n}\n\n// Forms\n// ==========================================================================\n\n//\n// Known limitation: by default, Chrome and Safari on OS X allow very limited\n// styling of `select`, unless a `border` property is set.\n//\n\n//\n// 1. Correct color not being inherited.\n// Known issue: affects color of disabled elements.\n// 2. Correct font properties not being inherited.\n// 3. Address margins set differently in Firefox 4+, Safari, and Chrome.\n//\n\nbutton,\ninput,\noptgroup,\nselect,\ntextarea {\n color: inherit; // 1\n font: inherit; // 2\n margin: 0; // 3\n}\n\n//\n// Address `overflow` set to `hidden` in IE 8/9/10/11.\n//\n\nbutton {\n overflow: visible;\n}\n\n//\n// Address inconsistent `text-transform` inheritance for `button` and `select`.\n// All other form control elements do not inherit `text-transform` values.\n// Correct `button` style inheritance in Firefox, IE 8/9/10/11, and Opera.\n// Correct `select` style inheritance in Firefox.\n//\n\nbutton,\nselect {\n text-transform: none;\n}\n\n//\n// 1. Avoid the WebKit bug in Android 4.0.* where (2) destroys native `audio`\n// and `video` controls.\n// 2. Correct inability to style clickable `input` types in iOS.\n// 3. Improve usability and consistency of cursor style between image-type\n// `input` and others.\n//\n\nbutton,\nhtml input[type=\"button\"], // 1\ninput[type=\"reset\"],\ninput[type=\"submit\"] {\n -webkit-appearance: button; // 2\n cursor: pointer; // 3\n}\n\n//\n// Re-set default cursor for disabled elements.\n//\n\nbutton[disabled],\nhtml input[disabled] {\n cursor: default;\n}\n\n//\n// Remove inner padding and border in Firefox 4+.\n//\n\nbutton::-moz-focus-inner,\ninput::-moz-focus-inner {\n border: 0;\n padding: 0;\n}\n\n//\n// Address Firefox 4+ setting `line-height` on `input` using `!important` in\n// the UA stylesheet.\n//\n\ninput {\n line-height: normal;\n}\n\n//\n// It's recommended that you don't attempt to style these elements.\n// Firefox's implementation doesn't respect box-sizing, padding, or width.\n//\n// 1. Address box sizing set to `content-box` in IE 8/9/10.\n// 2. Remove excess padding in IE 8/9/10.\n//\n\ninput[type=\"checkbox\"],\ninput[type=\"radio\"] {\n box-sizing: border-box; // 1\n padding: 0; // 2\n}\n\n//\n// Fix the cursor style for Chrome's increment/decrement buttons. For certain\n// `font-size` values of the `input`, it causes the cursor style of the\n// decrement button to change from `default` to `text`.\n//\n\ninput[type=\"number\"]::-webkit-inner-spin-button,\ninput[type=\"number\"]::-webkit-outer-spin-button {\n height: auto;\n}\n\n//\n// 1. Address `appearance` set to `searchfield` in Safari and Chrome.\n// 2. Address `box-sizing` set to `border-box` in Safari and Chrome.\n//\n\ninput[type=\"search\"] {\n -webkit-appearance: textfield; // 1\n box-sizing: content-box; //2\n}\n\n//\n// Remove inner padding and search cancel button in Safari and Chrome on OS X.\n// Safari (but not Chrome) clips the cancel button when the search input has\n// padding (and `textfield` appearance).\n//\n\ninput[type=\"search\"]::-webkit-search-cancel-button,\ninput[type=\"search\"]::-webkit-search-decoration {\n -webkit-appearance: none;\n}\n\n//\n// Define consistent border, margin, and padding.\n//\n\nfieldset {\n border: 1px solid #c0c0c0;\n margin: 0 2px;\n padding: 0.35em 0.625em 0.75em;\n}\n\n//\n// 1. Correct `color` not being inherited in IE 8/9/10/11.\n// 2. Remove padding so people aren't caught out if they zero out fieldsets.\n//\n\nlegend {\n border: 0; // 1\n padding: 0; // 2\n}\n\n//\n// Remove default vertical scrollbar in IE 8/9/10/11.\n//\n\ntextarea {\n overflow: auto;\n}\n\n//\n// Don't inherit the `font-weight` (applied by a rule above).\n// NOTE: the default cannot safely be changed in Chrome and Safari on OS X.\n//\n\noptgroup {\n font-weight: bold;\n}\n\n// Tables\n// ==========================================================================\n\n//\n// Remove most spacing between table cells.\n//\n\ntable {\n border-collapse: collapse;\n border-spacing: 0;\n}\n\ntd,\nth {\n padding: 0;\n}\n","/*! Source: https://github.com/h5bp/html5-boilerplate/blob/master/src/css/main.css */\n\n// ==========================================================================\n// Print styles.\n// Inlined to avoid the additional HTTP request: h5bp.com/r\n// ==========================================================================\n\n@media print {\n *,\n *:before,\n *:after {\n background: transparent !important;\n color: #000 !important; // Black prints faster: h5bp.com/s\n box-shadow: none !important;\n text-shadow: none !important;\n }\n\n a,\n a:visited {\n text-decoration: underline;\n }\n\n a[href]:after {\n content: \" (\" attr(href) \")\";\n }\n\n abbr[title]:after {\n content: \" (\" attr(title) \")\";\n }\n\n // Don't show links that are fragment identifiers,\n // or use the `javascript:` pseudo protocol\n a[href^=\"#\"]:after,\n a[href^=\"javascript:\"]:after {\n content: \"\";\n }\n\n pre,\n blockquote {\n border: 1px solid #999;\n page-break-inside: avoid;\n }\n\n thead {\n display: table-header-group; // h5bp.com/t\n }\n\n tr,\n img {\n page-break-inside: avoid;\n }\n\n img {\n max-width: 100% !important;\n }\n\n p,\n h2,\n h3 {\n orphans: 3;\n widows: 3;\n }\n\n h2,\n h3 {\n page-break-after: avoid;\n }\n\n // Bootstrap specific changes start\n\n // Bootstrap components\n .navbar {\n display: none;\n }\n .btn,\n .dropup > .btn {\n > .caret {\n border-top-color: #000 !important;\n }\n }\n .label {\n border: 1px solid #000;\n }\n\n .table {\n border-collapse: collapse !important;\n\n td,\n th {\n background-color: #fff !important;\n }\n }\n .table-bordered {\n th,\n td {\n border: 1px solid #ddd !important;\n }\n }\n\n // Bootstrap specific changes end\n}\n","//\n// Glyphicons for Bootstrap\n//\n// Since icons are fonts, they can be placed anywhere text is placed and are\n// thus automatically sized to match the surrounding child. To use, create an\n// inline element with the appropriate classes, like so:\n//\n// Star\n\n// Import the fonts\n@font-face {\n font-family: 'Glyphicons Halflings';\n src: url('@{icon-font-path}@{icon-font-name}.eot');\n src: url('@{icon-font-path}@{icon-font-name}.eot?#iefix') format('embedded-opentype'),\n url('@{icon-font-path}@{icon-font-name}.woff2') format('woff2'),\n url('@{icon-font-path}@{icon-font-name}.woff') format('woff'),\n url('@{icon-font-path}@{icon-font-name}.ttf') format('truetype'),\n url('@{icon-font-path}@{icon-font-name}.svg#@{icon-font-svg-id}') format('svg');\n}\n\n// Catchall baseclass\n.glyphicon {\n position: relative;\n top: 1px;\n display: inline-block;\n font-family: 'Glyphicons Halflings';\n font-style: normal;\n font-weight: normal;\n line-height: 1;\n -webkit-font-smoothing: antialiased;\n -moz-osx-font-smoothing: grayscale;\n}\n\n// Individual icons\n.glyphicon-asterisk { &:before { content: \"\\002a\"; } }\n.glyphicon-plus { &:before { content: \"\\002b\"; } }\n.glyphicon-euro,\n.glyphicon-eur { &:before { content: \"\\20ac\"; } }\n.glyphicon-minus { &:before { content: \"\\2212\"; } }\n.glyphicon-cloud { &:before { content: \"\\2601\"; } }\n.glyphicon-envelope { &:before { content: \"\\2709\"; } }\n.glyphicon-pencil { &:before { content: \"\\270f\"; } }\n.glyphicon-glass { &:before { content: \"\\e001\"; } }\n.glyphicon-music { &:before { content: \"\\e002\"; } }\n.glyphicon-search { &:before { content: \"\\e003\"; } }\n.glyphicon-heart { &:before { content: \"\\e005\"; } }\n.glyphicon-star { &:before { content: \"\\e006\"; } }\n.glyphicon-star-empty { &:before { content: \"\\e007\"; } }\n.glyphicon-user { &:before { content: \"\\e008\"; } }\n.glyphicon-film { &:before { content: \"\\e009\"; } }\n.glyphicon-th-large { &:before { content: \"\\e010\"; } }\n.glyphicon-th { &:before { content: \"\\e011\"; } }\n.glyphicon-th-list { &:before { content: \"\\e012\"; } }\n.glyphicon-ok { &:before { content: \"\\e013\"; } }\n.glyphicon-remove { &:before { content: \"\\e014\"; } }\n.glyphicon-zoom-in { &:before { content: \"\\e015\"; } }\n.glyphicon-zoom-out { &:before { content: \"\\e016\"; } }\n.glyphicon-off { &:before { content: \"\\e017\"; } }\n.glyphicon-signal { &:before { content: \"\\e018\"; } }\n.glyphicon-cog { &:before { content: \"\\e019\"; } }\n.glyphicon-trash { &:before { content: \"\\e020\"; } }\n.glyphicon-home { &:before { content: \"\\e021\"; } }\n.glyphicon-file { &:before { content: \"\\e022\"; } }\n.glyphicon-time { &:before { content: \"\\e023\"; } }\n.glyphicon-road { &:before { content: \"\\e024\"; } }\n.glyphicon-download-alt { &:before { content: \"\\e025\"; } }\n.glyphicon-download { &:before { content: \"\\e026\"; } }\n.glyphicon-upload { &:before { content: \"\\e027\"; } }\n.glyphicon-inbox { &:before { content: \"\\e028\"; } }\n.glyphicon-play-circle { &:before { content: \"\\e029\"; } }\n.glyphicon-repeat { &:before { content: \"\\e030\"; } }\n.glyphicon-refresh { &:before { content: \"\\e031\"; } }\n.glyphicon-list-alt { &:before { content: \"\\e032\"; } }\n.glyphicon-lock { &:before { content: \"\\e033\"; } }\n.glyphicon-flag { &:before { content: \"\\e034\"; } }\n.glyphicon-headphones { &:before { content: \"\\e035\"; } }\n.glyphicon-volume-off { &:before { content: \"\\e036\"; } }\n.glyphicon-volume-down { &:before { content: \"\\e037\"; } }\n.glyphicon-volume-up { &:before { content: \"\\e038\"; } }\n.glyphicon-qrcode { &:before { content: \"\\e039\"; } }\n.glyphicon-barcode { &:before { content: \"\\e040\"; } }\n.glyphicon-tag { &:before { content: \"\\e041\"; } }\n.glyphicon-tags { &:before { content: \"\\e042\"; } }\n.glyphicon-book { &:before { content: \"\\e043\"; } }\n.glyphicon-bookmark { &:before { content: \"\\e044\"; } }\n.glyphicon-print { &:before { content: \"\\e045\"; } }\n.glyphicon-camera { &:before { content: \"\\e046\"; } }\n.glyphicon-font { &:before { content: \"\\e047\"; } }\n.glyphicon-bold { &:before { content: \"\\e048\"; } }\n.glyphicon-italic { &:before { content: \"\\e049\"; } }\n.glyphicon-text-height { &:before { content: \"\\e050\"; } }\n.glyphicon-text-width { &:before { content: \"\\e051\"; } }\n.glyphicon-align-left { &:before { content: \"\\e052\"; } }\n.glyphicon-align-center { &:before { content: \"\\e053\"; } }\n.glyphicon-align-right { &:before { content: \"\\e054\"; } }\n.glyphicon-align-justify { &:before { content: \"\\e055\"; } }\n.glyphicon-list { &:before { content: \"\\e056\"; } }\n.glyphicon-indent-left { &:before { content: \"\\e057\"; } }\n.glyphicon-indent-right { &:before { content: \"\\e058\"; } }\n.glyphicon-facetime-video { &:before { content: \"\\e059\"; } }\n.glyphicon-picture { &:before { content: \"\\e060\"; } }\n.glyphicon-map-marker { &:before { content: \"\\e062\"; } }\n.glyphicon-adjust { &:before { content: \"\\e063\"; } }\n.glyphicon-tint { &:before { content: \"\\e064\"; } }\n.glyphicon-edit { &:before { content: \"\\e065\"; } }\n.glyphicon-share { &:before { content: \"\\e066\"; } }\n.glyphicon-check { &:before { content: \"\\e067\"; } }\n.glyphicon-move { &:before { content: \"\\e068\"; } }\n.glyphicon-step-backward { &:before { content: \"\\e069\"; } }\n.glyphicon-fast-backward { &:before { content: \"\\e070\"; } }\n.glyphicon-backward { &:before { content: \"\\e071\"; } }\n.glyphicon-play { &:before { content: \"\\e072\"; } }\n.glyphicon-pause { &:before { content: \"\\e073\"; } }\n.glyphicon-stop { &:before { content: \"\\e074\"; } }\n.glyphicon-forward { &:before { content: \"\\e075\"; } }\n.glyphicon-fast-forward { &:before { content: \"\\e076\"; } }\n.glyphicon-step-forward { &:before { content: \"\\e077\"; } }\n.glyphicon-eject { &:before { content: \"\\e078\"; } }\n.glyphicon-chevron-left { &:before { content: \"\\e079\"; } }\n.glyphicon-chevron-right { &:before { content: \"\\e080\"; } }\n.glyphicon-plus-sign { &:before { content: \"\\e081\"; } }\n.glyphicon-minus-sign { &:before { content: \"\\e082\"; } }\n.glyphicon-remove-sign { &:before { content: \"\\e083\"; } }\n.glyphicon-ok-sign { &:before { content: \"\\e084\"; } }\n.glyphicon-question-sign { &:before { content: \"\\e085\"; } }\n.glyphicon-info-sign { &:before { content: \"\\e086\"; } }\n.glyphicon-screenshot { &:before { content: \"\\e087\"; } }\n.glyphicon-remove-circle { &:before { content: \"\\e088\"; } }\n.glyphicon-ok-circle { &:before { content: \"\\e089\"; } }\n.glyphicon-ban-circle { &:before { content: \"\\e090\"; } }\n.glyphicon-arrow-left { &:before { content: \"\\e091\"; } }\n.glyphicon-arrow-right { &:before { content: \"\\e092\"; } }\n.glyphicon-arrow-up { &:before { content: \"\\e093\"; } }\n.glyphicon-arrow-down { &:before { content: \"\\e094\"; } }\n.glyphicon-share-alt { &:before { content: \"\\e095\"; } }\n.glyphicon-resize-full { &:before { content: \"\\e096\"; } }\n.glyphicon-resize-small { &:before { content: \"\\e097\"; } }\n.glyphicon-exclamation-sign { &:before { content: \"\\e101\"; } }\n.glyphicon-gift { &:before { content: \"\\e102\"; } }\n.glyphicon-leaf { &:before { content: \"\\e103\"; } }\n.glyphicon-fire { &:before { content: \"\\e104\"; } }\n.glyphicon-eye-open { &:before { content: \"\\e105\"; } }\n.glyphicon-eye-close { &:before { content: \"\\e106\"; } }\n.glyphicon-warning-sign { &:before { content: \"\\e107\"; } }\n.glyphicon-plane { &:before { content: \"\\e108\"; } }\n.glyphicon-calendar { &:before { content: \"\\e109\"; } }\n.glyphicon-random { &:before { content: \"\\e110\"; } }\n.glyphicon-comment { &:before { content: \"\\e111\"; } }\n.glyphicon-magnet { &:before { content: \"\\e112\"; } }\n.glyphicon-chevron-up { &:before { content: \"\\e113\"; } }\n.glyphicon-chevron-down { &:before { content: \"\\e114\"; } }\n.glyphicon-retweet { &:before { content: \"\\e115\"; } }\n.glyphicon-shopping-cart { &:before { content: \"\\e116\"; } }\n.glyphicon-folder-close { &:before { content: \"\\e117\"; } }\n.glyphicon-folder-open { &:before { content: \"\\e118\"; } }\n.glyphicon-resize-vertical { &:before { content: \"\\e119\"; } }\n.glyphicon-resize-horizontal { &:before { content: \"\\e120\"; } }\n.glyphicon-hdd { &:before { content: \"\\e121\"; } }\n.glyphicon-bullhorn { &:before { content: \"\\e122\"; } }\n.glyphicon-bell { &:before { content: \"\\e123\"; } }\n.glyphicon-certificate { &:before { content: \"\\e124\"; } }\n.glyphicon-thumbs-up { &:before { content: \"\\e125\"; } }\n.glyphicon-thumbs-down { &:before { content: \"\\e126\"; } }\n.glyphicon-hand-right { &:before { content: \"\\e127\"; } }\n.glyphicon-hand-left { &:before { content: \"\\e128\"; } }\n.glyphicon-hand-up { &:before { content: \"\\e129\"; } }\n.glyphicon-hand-down { &:before { content: \"\\e130\"; } }\n.glyphicon-circle-arrow-right { &:before { content: \"\\e131\"; } }\n.glyphicon-circle-arrow-left { &:before { content: \"\\e132\"; } }\n.glyphicon-circle-arrow-up { &:before { content: \"\\e133\"; } }\n.glyphicon-circle-arrow-down { &:before { content: \"\\e134\"; } }\n.glyphicon-globe { &:before { content: \"\\e135\"; } }\n.glyphicon-wrench { &:before { content: \"\\e136\"; } }\n.glyphicon-tasks { &:before { content: \"\\e137\"; } }\n.glyphicon-filter { &:before { content: \"\\e138\"; } }\n.glyphicon-briefcase { &:before { content: \"\\e139\"; } }\n.glyphicon-fullscreen { &:before { content: \"\\e140\"; } }\n.glyphicon-dashboard { &:before { content: \"\\e141\"; } }\n.glyphicon-paperclip { &:before { content: \"\\e142\"; } }\n.glyphicon-heart-empty { &:before { content: \"\\e143\"; } }\n.glyphicon-link { &:before { content: \"\\e144\"; } }\n.glyphicon-phone { &:before { content: \"\\e145\"; } }\n.glyphicon-pushpin { &:before { content: \"\\e146\"; } }\n.glyphicon-usd { &:before { content: \"\\e148\"; } }\n.glyphicon-gbp { &:before { content: \"\\e149\"; } }\n.glyphicon-sort { &:before { content: \"\\e150\"; } }\n.glyphicon-sort-by-alphabet { &:before { content: \"\\e151\"; } }\n.glyphicon-sort-by-alphabet-alt { &:before { content: \"\\e152\"; } }\n.glyphicon-sort-by-order { &:before { content: \"\\e153\"; } }\n.glyphicon-sort-by-order-alt { &:before { content: \"\\e154\"; } }\n.glyphicon-sort-by-attributes { &:before { content: \"\\e155\"; } }\n.glyphicon-sort-by-attributes-alt { &:before { content: \"\\e156\"; } }\n.glyphicon-unchecked { &:before { content: \"\\e157\"; } }\n.glyphicon-expand { &:before { content: \"\\e158\"; } }\n.glyphicon-collapse-down { &:before { content: \"\\e159\"; } }\n.glyphicon-collapse-up { &:before { content: \"\\e160\"; } }\n.glyphicon-log-in { &:before { content: \"\\e161\"; } }\n.glyphicon-flash { &:before { content: \"\\e162\"; } }\n.glyphicon-log-out { &:before { content: \"\\e163\"; } }\n.glyphicon-new-window { &:before { content: \"\\e164\"; } }\n.glyphicon-record { &:before { content: \"\\e165\"; } }\n.glyphicon-save { &:before { content: \"\\e166\"; } }\n.glyphicon-open { &:before { content: \"\\e167\"; } }\n.glyphicon-saved { &:before { content: \"\\e168\"; } }\n.glyphicon-import { &:before { content: \"\\e169\"; } }\n.glyphicon-export { &:before { content: \"\\e170\"; } }\n.glyphicon-send { &:before { content: \"\\e171\"; } }\n.glyphicon-floppy-disk { &:before { content: \"\\e172\"; } }\n.glyphicon-floppy-saved { &:before { content: \"\\e173\"; } }\n.glyphicon-floppy-remove { &:before { content: \"\\e174\"; } }\n.glyphicon-floppy-save { &:before { content: \"\\e175\"; } }\n.glyphicon-floppy-open { &:before { content: \"\\e176\"; } }\n.glyphicon-credit-card { &:before { content: \"\\e177\"; } }\n.glyphicon-transfer { &:before { content: \"\\e178\"; } }\n.glyphicon-cutlery { &:before { content: \"\\e179\"; } }\n.glyphicon-header { &:before { content: \"\\e180\"; } }\n.glyphicon-compressed { &:before { content: \"\\e181\"; } }\n.glyphicon-earphone { &:before { content: \"\\e182\"; } }\n.glyphicon-phone-alt { &:before { content: \"\\e183\"; } }\n.glyphicon-tower { &:before { content: \"\\e184\"; } }\n.glyphicon-stats { &:before { content: \"\\e185\"; } }\n.glyphicon-sd-video { &:before { content: \"\\e186\"; } }\n.glyphicon-hd-video { &:before { content: \"\\e187\"; } }\n.glyphicon-subtitles { &:before { content: \"\\e188\"; } }\n.glyphicon-sound-stereo { &:before { content: \"\\e189\"; } }\n.glyphicon-sound-dolby { &:before { content: \"\\e190\"; } }\n.glyphicon-sound-5-1 { &:before { content: \"\\e191\"; } }\n.glyphicon-sound-6-1 { &:before { content: \"\\e192\"; } }\n.glyphicon-sound-7-1 { &:before { content: \"\\e193\"; } }\n.glyphicon-copyright-mark { &:before { content: \"\\e194\"; } }\n.glyphicon-registration-mark { &:before { content: \"\\e195\"; } }\n.glyphicon-cloud-download { &:before { content: \"\\e197\"; } }\n.glyphicon-cloud-upload { &:before { content: \"\\e198\"; } }\n.glyphicon-tree-conifer { &:before { content: \"\\e199\"; } }\n.glyphicon-tree-deciduous { &:before { content: \"\\e200\"; } }\n.glyphicon-cd { &:before { content: \"\\e201\"; } }\n.glyphicon-save-file { &:before { content: \"\\e202\"; } }\n.glyphicon-open-file { &:before { content: \"\\e203\"; } }\n.glyphicon-level-up { &:before { content: \"\\e204\"; } }\n.glyphicon-copy { &:before { content: \"\\e205\"; } }\n.glyphicon-paste { &:before { content: \"\\e206\"; } }\n// The following 2 Glyphicons are omitted for the time being because\n// they currently use Unicode codepoints that are outside the\n// Basic Multilingual Plane (BMP). Older buggy versions of WebKit can't handle\n// non-BMP codepoints in CSS string escapes, and thus can't display these two icons.\n// Notably, the bug affects some older versions of the Android Browser.\n// More info: https://github.com/twbs/bootstrap/issues/10106\n// .glyphicon-door { &:before { content: \"\\1f6aa\"; } }\n// .glyphicon-key { &:before { content: \"\\1f511\"; } }\n.glyphicon-alert { &:before { content: \"\\e209\"; } }\n.glyphicon-equalizer { &:before { content: \"\\e210\"; } }\n.glyphicon-king { &:before { content: \"\\e211\"; } }\n.glyphicon-queen { &:before { content: \"\\e212\"; } }\n.glyphicon-pawn { &:before { content: \"\\e213\"; } }\n.glyphicon-bishop { &:before { content: \"\\e214\"; } }\n.glyphicon-knight { &:before { content: \"\\e215\"; } }\n.glyphicon-baby-formula { &:before { content: \"\\e216\"; } }\n.glyphicon-tent { &:before { content: \"\\26fa\"; } }\n.glyphicon-blackboard { &:before { content: \"\\e218\"; } }\n.glyphicon-bed { &:before { content: \"\\e219\"; } }\n.glyphicon-apple { &:before { content: \"\\f8ff\"; } }\n.glyphicon-erase { &:before { content: \"\\e221\"; } }\n.glyphicon-hourglass { &:before { content: \"\\231b\"; } }\n.glyphicon-lamp { &:before { content: \"\\e223\"; } }\n.glyphicon-duplicate { &:before { content: \"\\e224\"; } }\n.glyphicon-piggy-bank { &:before { content: \"\\e225\"; } }\n.glyphicon-scissors { &:before { content: \"\\e226\"; } }\n.glyphicon-bitcoin { &:before { content: \"\\e227\"; } }\n.glyphicon-btc { &:before { content: \"\\e227\"; } }\n.glyphicon-xbt { &:before { content: \"\\e227\"; } }\n.glyphicon-yen { &:before { content: \"\\00a5\"; } }\n.glyphicon-jpy { &:before { content: \"\\00a5\"; } }\n.glyphicon-ruble { &:before { content: \"\\20bd\"; } }\n.glyphicon-rub { &:before { content: \"\\20bd\"; } }\n.glyphicon-scale { &:before { content: \"\\e230\"; } }\n.glyphicon-ice-lolly { &:before { content: \"\\e231\"; } }\n.glyphicon-ice-lolly-tasted { &:before { content: \"\\e232\"; } }\n.glyphicon-education { &:before { content: \"\\e233\"; } }\n.glyphicon-option-horizontal { &:before { content: \"\\e234\"; } }\n.glyphicon-option-vertical { &:before { content: \"\\e235\"; } }\n.glyphicon-menu-hamburger { &:before { content: \"\\e236\"; } }\n.glyphicon-modal-window { &:before { content: \"\\e237\"; } }\n.glyphicon-oil { &:before { content: \"\\e238\"; } }\n.glyphicon-grain { &:before { content: \"\\e239\"; } }\n.glyphicon-sunglasses { &:before { content: \"\\e240\"; } }\n.glyphicon-text-size { &:before { content: \"\\e241\"; } }\n.glyphicon-text-color { &:before { content: \"\\e242\"; } }\n.glyphicon-text-background { &:before { content: \"\\e243\"; } }\n.glyphicon-object-align-top { &:before { content: \"\\e244\"; } }\n.glyphicon-object-align-bottom { &:before { content: \"\\e245\"; } }\n.glyphicon-object-align-horizontal{ &:before { content: \"\\e246\"; } }\n.glyphicon-object-align-left { &:before { content: \"\\e247\"; } }\n.glyphicon-object-align-vertical { &:before { content: \"\\e248\"; } }\n.glyphicon-object-align-right { &:before { content: \"\\e249\"; } }\n.glyphicon-triangle-right { &:before { content: \"\\e250\"; } }\n.glyphicon-triangle-left { &:before { content: \"\\e251\"; } }\n.glyphicon-triangle-bottom { &:before { content: \"\\e252\"; } }\n.glyphicon-triangle-top { &:before { content: \"\\e253\"; } }\n.glyphicon-console { &:before { content: \"\\e254\"; } }\n.glyphicon-superscript { &:before { content: \"\\e255\"; } }\n.glyphicon-subscript { &:before { content: \"\\e256\"; } }\n.glyphicon-menu-left { &:before { content: \"\\e257\"; } }\n.glyphicon-menu-right { &:before { content: \"\\e258\"; } }\n.glyphicon-menu-down { &:before { content: \"\\e259\"; } }\n.glyphicon-menu-up { &:before { content: \"\\e260\"; } }\n","//\n// Scaffolding\n// --------------------------------------------------\n\n\n// Reset the box-sizing\n//\n// Heads up! This reset may cause conflicts with some third-party widgets.\n// For recommendations on resolving such conflicts, see\n// http://getbootstrap.com/getting-started/#third-box-sizing\n* {\n .box-sizing(border-box);\n}\n*:before,\n*:after {\n .box-sizing(border-box);\n}\n\n\n// Body reset\n\nhtml {\n font-size: 10px;\n -webkit-tap-highlight-color: rgba(0,0,0,0);\n}\n\nbody {\n font-family: @font-family-base;\n font-size: @font-size-base;\n line-height: @line-height-base;\n color: @text-color;\n background-color: @body-bg;\n}\n\n// Reset fonts for relevant elements\ninput,\nbutton,\nselect,\ntextarea {\n font-family: inherit;\n font-size: inherit;\n line-height: inherit;\n}\n\n\n// Links\n\na {\n color: @link-color;\n text-decoration: none;\n\n &:hover,\n &:focus {\n color: @link-hover-color;\n text-decoration: @link-hover-decoration;\n }\n\n &:focus {\n .tab-focus();\n }\n}\n\n\n// Figures\n//\n// We reset this here because previously Normalize had no `figure` margins. This\n// ensures we don't break anyone's use of the element.\n\nfigure {\n margin: 0;\n}\n\n\n// Images\n\nimg {\n vertical-align: middle;\n}\n\n// Responsive images (ensure images don't scale beyond their parents)\n.img-responsive {\n .img-responsive();\n}\n\n// Rounded corners\n.img-rounded {\n border-radius: @border-radius-large;\n}\n\n// Image thumbnails\n//\n// Heads up! This is mixin-ed into thumbnails.less for `.thumbnail`.\n.img-thumbnail {\n padding: @thumbnail-padding;\n line-height: @line-height-base;\n background-color: @thumbnail-bg;\n border: 1px solid @thumbnail-border;\n border-radius: @thumbnail-border-radius;\n .transition(all .2s ease-in-out);\n\n // Keep them at most 100% wide\n .img-responsive(inline-block);\n}\n\n// Perfect circle\n.img-circle {\n border-radius: 50%; // set radius in percents\n}\n\n\n// Horizontal rules\n\nhr {\n margin-top: @line-height-computed;\n margin-bottom: @line-height-computed;\n border: 0;\n border-top: 1px solid @hr-border;\n}\n\n\n// Only display content to screen readers\n//\n// See: http://a11yproject.com/posts/how-to-hide-content\n\n.sr-only {\n position: absolute;\n width: 1px;\n height: 1px;\n margin: -1px;\n padding: 0;\n overflow: hidden;\n clip: rect(0,0,0,0);\n border: 0;\n}\n\n// Use in conjunction with .sr-only to only display content when it's focused.\n// Useful for \"Skip to main content\" links; see http://www.w3.org/TR/2013/NOTE-WCAG20-TECHS-20130905/G1\n// Credit: HTML5 Boilerplate\n\n.sr-only-focusable {\n &:active,\n &:focus {\n position: static;\n width: auto;\n height: auto;\n margin: 0;\n overflow: visible;\n clip: auto;\n }\n}\n\n\n// iOS \"clickable elements\" fix for role=\"button\"\n//\n// Fixes \"clickability\" issue (and more generally, the firing of events such as focus as well)\n// for traditionally non-focusable elements with role=\"button\"\n// see https://developer.mozilla.org/en-US/docs/Web/Events/click#Safari_Mobile\n\n[role=\"button\"] {\n cursor: pointer;\n}\n","// Vendor Prefixes\n//\n// All vendor mixins are deprecated as of v3.2.0 due to the introduction of\n// Autoprefixer in our Gruntfile. They have been removed in v4.\n\n// - Animations\n// - Backface visibility\n// - Box shadow\n// - Box sizing\n// - Content columns\n// - Hyphens\n// - Placeholder text\n// - Transformations\n// - Transitions\n// - User Select\n\n\n// Animations\n.animation(@animation) {\n -webkit-animation: @animation;\n -o-animation: @animation;\n animation: @animation;\n}\n.animation-name(@name) {\n -webkit-animation-name: @name;\n animation-name: @name;\n}\n.animation-duration(@duration) {\n -webkit-animation-duration: @duration;\n animation-duration: @duration;\n}\n.animation-timing-function(@timing-function) {\n -webkit-animation-timing-function: @timing-function;\n animation-timing-function: @timing-function;\n}\n.animation-delay(@delay) {\n -webkit-animation-delay: @delay;\n animation-delay: @delay;\n}\n.animation-iteration-count(@iteration-count) {\n -webkit-animation-iteration-count: @iteration-count;\n animation-iteration-count: @iteration-count;\n}\n.animation-direction(@direction) {\n -webkit-animation-direction: @direction;\n animation-direction: @direction;\n}\n.animation-fill-mode(@fill-mode) {\n -webkit-animation-fill-mode: @fill-mode;\n animation-fill-mode: @fill-mode;\n}\n\n// Backface visibility\n// Prevent browsers from flickering when using CSS 3D transforms.\n// Default value is `visible`, but can be changed to `hidden`\n\n.backface-visibility(@visibility) {\n -webkit-backface-visibility: @visibility;\n -moz-backface-visibility: @visibility;\n backface-visibility: @visibility;\n}\n\n// Drop shadows\n//\n// Note: Deprecated `.box-shadow()` as of v3.1.0 since all of Bootstrap's\n// supported browsers that have box shadow capabilities now support it.\n\n.box-shadow(@shadow) {\n -webkit-box-shadow: @shadow; // iOS <4.3 & Android <4.1\n box-shadow: @shadow;\n}\n\n// Box sizing\n.box-sizing(@boxmodel) {\n -webkit-box-sizing: @boxmodel;\n -moz-box-sizing: @boxmodel;\n box-sizing: @boxmodel;\n}\n\n// CSS3 Content Columns\n.content-columns(@column-count; @column-gap: @grid-gutter-width) {\n -webkit-column-count: @column-count;\n -moz-column-count: @column-count;\n column-count: @column-count;\n -webkit-column-gap: @column-gap;\n -moz-column-gap: @column-gap;\n column-gap: @column-gap;\n}\n\n// Optional hyphenation\n.hyphens(@mode: auto) {\n word-wrap: break-word;\n -webkit-hyphens: @mode;\n -moz-hyphens: @mode;\n -ms-hyphens: @mode; // IE10+\n -o-hyphens: @mode;\n hyphens: @mode;\n}\n\n// Placeholder text\n.placeholder(@color: @input-color-placeholder) {\n // Firefox\n &::-moz-placeholder {\n color: @color;\n opacity: 1; // Override Firefox's unusual default opacity; see https://github.com/twbs/bootstrap/pull/11526\n }\n &:-ms-input-placeholder { color: @color; } // Internet Explorer 10+\n &::-webkit-input-placeholder { color: @color; } // Safari and Chrome\n}\n\n// Transformations\n.scale(@ratio) {\n -webkit-transform: scale(@ratio);\n -ms-transform: scale(@ratio); // IE9 only\n -o-transform: scale(@ratio);\n transform: scale(@ratio);\n}\n.scale(@ratioX; @ratioY) {\n -webkit-transform: scale(@ratioX, @ratioY);\n -ms-transform: scale(@ratioX, @ratioY); // IE9 only\n -o-transform: scale(@ratioX, @ratioY);\n transform: scale(@ratioX, @ratioY);\n}\n.scaleX(@ratio) {\n -webkit-transform: scaleX(@ratio);\n -ms-transform: scaleX(@ratio); // IE9 only\n -o-transform: scaleX(@ratio);\n transform: scaleX(@ratio);\n}\n.scaleY(@ratio) {\n -webkit-transform: scaleY(@ratio);\n -ms-transform: scaleY(@ratio); // IE9 only\n -o-transform: scaleY(@ratio);\n transform: scaleY(@ratio);\n}\n.skew(@x; @y) {\n -webkit-transform: skewX(@x) skewY(@y);\n -ms-transform: skewX(@x) skewY(@y); // See https://github.com/twbs/bootstrap/issues/4885; IE9+\n -o-transform: skewX(@x) skewY(@y);\n transform: skewX(@x) skewY(@y);\n}\n.translate(@x; @y) {\n -webkit-transform: translate(@x, @y);\n -ms-transform: translate(@x, @y); // IE9 only\n -o-transform: translate(@x, @y);\n transform: translate(@x, @y);\n}\n.translate3d(@x; @y; @z) {\n -webkit-transform: translate3d(@x, @y, @z);\n transform: translate3d(@x, @y, @z);\n}\n.rotate(@degrees) {\n -webkit-transform: rotate(@degrees);\n -ms-transform: rotate(@degrees); // IE9 only\n -o-transform: rotate(@degrees);\n transform: rotate(@degrees);\n}\n.rotateX(@degrees) {\n -webkit-transform: rotateX(@degrees);\n -ms-transform: rotateX(@degrees); // IE9 only\n -o-transform: rotateX(@degrees);\n transform: rotateX(@degrees);\n}\n.rotateY(@degrees) {\n -webkit-transform: rotateY(@degrees);\n -ms-transform: rotateY(@degrees); // IE9 only\n -o-transform: rotateY(@degrees);\n transform: rotateY(@degrees);\n}\n.perspective(@perspective) {\n -webkit-perspective: @perspective;\n -moz-perspective: @perspective;\n perspective: @perspective;\n}\n.perspective-origin(@perspective) {\n -webkit-perspective-origin: @perspective;\n -moz-perspective-origin: @perspective;\n perspective-origin: @perspective;\n}\n.transform-origin(@origin) {\n -webkit-transform-origin: @origin;\n -moz-transform-origin: @origin;\n -ms-transform-origin: @origin; // IE9 only\n transform-origin: @origin;\n}\n\n\n// Transitions\n\n.transition(@transition) {\n -webkit-transition: @transition;\n -o-transition: @transition;\n transition: @transition;\n}\n.transition-property(@transition-property) {\n -webkit-transition-property: @transition-property;\n transition-property: @transition-property;\n}\n.transition-delay(@transition-delay) {\n -webkit-transition-delay: @transition-delay;\n transition-delay: @transition-delay;\n}\n.transition-duration(@transition-duration) {\n -webkit-transition-duration: @transition-duration;\n transition-duration: @transition-duration;\n}\n.transition-timing-function(@timing-function) {\n -webkit-transition-timing-function: @timing-function;\n transition-timing-function: @timing-function;\n}\n.transition-transform(@transition) {\n -webkit-transition: -webkit-transform @transition;\n -moz-transition: -moz-transform @transition;\n -o-transition: -o-transform @transition;\n transition: transform @transition;\n}\n\n\n// User select\n// For selecting text on the page\n\n.user-select(@select) {\n -webkit-user-select: @select;\n -moz-user-select: @select;\n -ms-user-select: @select; // IE10+\n user-select: @select;\n}\n","// WebKit-style focus\n\n.tab-focus() {\n // WebKit-specific. Other browsers will keep their default outline style.\n // (Initially tried to also force default via `outline: initial`,\n // but that seems to erroneously remove the outline in Firefox altogether.)\n outline: 5px auto -webkit-focus-ring-color;\n outline-offset: -2px;\n}\n","// Image Mixins\n// - Responsive image\n// - Retina image\n\n\n// Responsive image\n//\n// Keep images from scaling beyond the width of their parents.\n.img-responsive(@display: block) {\n display: @display;\n max-width: 100%; // Part 1: Set a maximum relative to the parent\n height: auto; // Part 2: Scale the height according to the width, otherwise you get stretching\n}\n\n\n// Retina image\n//\n// Short retina mixin for setting background-image and -size. Note that the\n// spelling of `min--moz-device-pixel-ratio` is intentional.\n.img-retina(@file-1x; @file-2x; @width-1x; @height-1x) {\n background-image: url(\"@{file-1x}\");\n\n @media\n only screen and (-webkit-min-device-pixel-ratio: 2),\n only screen and ( min--moz-device-pixel-ratio: 2),\n only screen and ( -o-min-device-pixel-ratio: 2/1),\n only screen and ( min-device-pixel-ratio: 2),\n only screen and ( min-resolution: 192dpi),\n only screen and ( min-resolution: 2dppx) {\n background-image: url(\"@{file-2x}\");\n background-size: @width-1x @height-1x;\n }\n}\n","//\n// Typography\n// --------------------------------------------------\n\n\n// Headings\n// -------------------------\n\nh1, h2, h3, h4, h5, h6,\n.h1, .h2, .h3, .h4, .h5, .h6 {\n font-family: @headings-font-family;\n font-weight: @headings-font-weight;\n line-height: @headings-line-height;\n color: @headings-color;\n\n small,\n .small {\n font-weight: normal;\n line-height: 1;\n color: @headings-small-color;\n }\n}\n\nh1, .h1,\nh2, .h2,\nh3, .h3 {\n margin-top: @line-height-computed;\n margin-bottom: (@line-height-computed / 2);\n\n small,\n .small {\n font-size: 65%;\n }\n}\nh4, .h4,\nh5, .h5,\nh6, .h6 {\n margin-top: (@line-height-computed / 2);\n margin-bottom: (@line-height-computed / 2);\n\n small,\n .small {\n font-size: 75%;\n }\n}\n\nh1, .h1 { font-size: @font-size-h1; }\nh2, .h2 { font-size: @font-size-h2; }\nh3, .h3 { font-size: @font-size-h3; }\nh4, .h4 { font-size: @font-size-h4; }\nh5, .h5 { font-size: @font-size-h5; }\nh6, .h6 { font-size: @font-size-h6; }\n\n\n// Body text\n// -------------------------\n\np {\n margin: 0 0 (@line-height-computed / 2);\n}\n\n.lead {\n margin-bottom: @line-height-computed;\n font-size: floor((@font-size-base * 1.15));\n font-weight: 300;\n line-height: 1.4;\n\n @media (min-width: @screen-sm-min) {\n font-size: (@font-size-base * 1.5);\n }\n}\n\n\n// Emphasis & misc\n// -------------------------\n\n// Ex: (12px small font / 14px base font) * 100% = about 85%\nsmall,\n.small {\n font-size: floor((100% * @font-size-small / @font-size-base));\n}\n\nmark,\n.mark {\n background-color: @state-warning-bg;\n padding: .2em;\n}\n\n// Alignment\n.text-left { text-align: left; }\n.text-right { text-align: right; }\n.text-center { text-align: center; }\n.text-justify { text-align: justify; }\n.text-nowrap { white-space: nowrap; }\n\n// Transformation\n.text-lowercase { text-transform: lowercase; }\n.text-uppercase { text-transform: uppercase; }\n.text-capitalize { text-transform: capitalize; }\n\n// Contextual colors\n.text-muted {\n color: @text-muted;\n}\n.text-primary {\n .text-emphasis-variant(@brand-primary);\n}\n.text-success {\n .text-emphasis-variant(@state-success-text);\n}\n.text-info {\n .text-emphasis-variant(@state-info-text);\n}\n.text-warning {\n .text-emphasis-variant(@state-warning-text);\n}\n.text-danger {\n .text-emphasis-variant(@state-danger-text);\n}\n\n// Contextual backgrounds\n// For now we'll leave these alongside the text classes until v4 when we can\n// safely shift things around (per SemVer rules).\n.bg-primary {\n // Given the contrast here, this is the only class to have its color inverted\n // automatically.\n color: #fff;\n .bg-variant(@brand-primary);\n}\n.bg-success {\n .bg-variant(@state-success-bg);\n}\n.bg-info {\n .bg-variant(@state-info-bg);\n}\n.bg-warning {\n .bg-variant(@state-warning-bg);\n}\n.bg-danger {\n .bg-variant(@state-danger-bg);\n}\n\n\n// Page header\n// -------------------------\n\n.page-header {\n padding-bottom: ((@line-height-computed / 2) - 1);\n margin: (@line-height-computed * 2) 0 @line-height-computed;\n border-bottom: 1px solid @page-header-border-color;\n}\n\n\n// Lists\n// -------------------------\n\n// Unordered and Ordered lists\nul,\nol {\n margin-top: 0;\n margin-bottom: (@line-height-computed / 2);\n ul,\n ol {\n margin-bottom: 0;\n }\n}\n\n// List options\n\n// Unstyled keeps list items block level, just removes default browser padding and list-style\n.list-unstyled {\n padding-left: 0;\n list-style: none;\n}\n\n// Inline turns list items into inline-block\n.list-inline {\n .list-unstyled();\n margin-left: -5px;\n\n > li {\n display: inline-block;\n padding-left: 5px;\n padding-right: 5px;\n }\n}\n\n// Description Lists\ndl {\n margin-top: 0; // Remove browser default\n margin-bottom: @line-height-computed;\n}\ndt,\ndd {\n line-height: @line-height-base;\n}\ndt {\n font-weight: bold;\n}\ndd {\n margin-left: 0; // Undo browser default\n}\n\n// Horizontal description lists\n//\n// Defaults to being stacked without any of the below styles applied, until the\n// grid breakpoint is reached (default of ~768px).\n\n.dl-horizontal {\n dd {\n &:extend(.clearfix all); // Clear the floated `dt` if an empty `dd` is present\n }\n\n @media (min-width: @dl-horizontal-breakpoint) {\n dt {\n float: left;\n width: (@dl-horizontal-offset - 20);\n clear: left;\n text-align: right;\n .text-overflow();\n }\n dd {\n margin-left: @dl-horizontal-offset;\n }\n }\n}\n\n\n// Misc\n// -------------------------\n\n// Abbreviations and acronyms\nabbr[title],\n// Add data-* attribute to help out our tooltip plugin, per https://github.com/twbs/bootstrap/issues/5257\nabbr[data-original-title] {\n cursor: help;\n border-bottom: 1px dotted @abbr-border-color;\n}\n.initialism {\n font-size: 90%;\n .text-uppercase();\n}\n\n// Blockquotes\nblockquote {\n padding: (@line-height-computed / 2) @line-height-computed;\n margin: 0 0 @line-height-computed;\n font-size: @blockquote-font-size;\n border-left: 5px solid @blockquote-border-color;\n\n p,\n ul,\n ol {\n &:last-child {\n margin-bottom: 0;\n }\n }\n\n // Note: Deprecated small and .small as of v3.1.0\n // Context: https://github.com/twbs/bootstrap/issues/11660\n footer,\n small,\n .small {\n display: block;\n font-size: 80%; // back to default font-size\n line-height: @line-height-base;\n color: @blockquote-small-color;\n\n &:before {\n content: '\\2014 \\00A0'; // em dash, nbsp\n }\n }\n}\n\n// Opposite alignment of blockquote\n//\n// Heads up: `blockquote.pull-right` has been deprecated as of v3.1.0.\n.blockquote-reverse,\nblockquote.pull-right {\n padding-right: 15px;\n padding-left: 0;\n border-right: 5px solid @blockquote-border-color;\n border-left: 0;\n text-align: right;\n\n // Account for citation\n footer,\n small,\n .small {\n &:before { content: ''; }\n &:after {\n content: '\\00A0 \\2014'; // nbsp, em dash\n }\n }\n}\n\n// Addresses\naddress {\n margin-bottom: @line-height-computed;\n font-style: normal;\n line-height: @line-height-base;\n}\n","// Typography\n\n.text-emphasis-variant(@color) {\n color: @color;\n a&:hover,\n a&:focus {\n color: darken(@color, 10%);\n }\n}\n","// Contextual backgrounds\n\n.bg-variant(@color) {\n background-color: @color;\n a&:hover,\n a&:focus {\n background-color: darken(@color, 10%);\n }\n}\n","// Text overflow\n// Requires inline-block or block for proper styling\n\n.text-overflow() {\n overflow: hidden;\n text-overflow: ellipsis;\n white-space: nowrap;\n}\n","//\n// Code (inline and block)\n// --------------------------------------------------\n\n\n// Inline and block code styles\ncode,\nkbd,\npre,\nsamp {\n font-family: @font-family-monospace;\n}\n\n// Inline code\ncode {\n padding: 2px 4px;\n font-size: 90%;\n color: @code-color;\n background-color: @code-bg;\n border-radius: @border-radius-base;\n}\n\n// User input typically entered via keyboard\nkbd {\n padding: 2px 4px;\n font-size: 90%;\n color: @kbd-color;\n background-color: @kbd-bg;\n border-radius: @border-radius-small;\n box-shadow: inset 0 -1px 0 rgba(0,0,0,.25);\n\n kbd {\n padding: 0;\n font-size: 100%;\n font-weight: bold;\n box-shadow: none;\n }\n}\n\n// Blocks of code\npre {\n display: block;\n padding: ((@line-height-computed - 1) / 2);\n margin: 0 0 (@line-height-computed / 2);\n font-size: (@font-size-base - 1); // 14px to 13px\n line-height: @line-height-base;\n word-break: break-all;\n word-wrap: break-word;\n color: @pre-color;\n background-color: @pre-bg;\n border: 1px solid @pre-border-color;\n border-radius: @border-radius-base;\n\n // Account for some code outputs that place code tags in pre tags\n code {\n padding: 0;\n font-size: inherit;\n color: inherit;\n white-space: pre-wrap;\n background-color: transparent;\n border-radius: 0;\n }\n}\n\n// Enable scrollable blocks of code\n.pre-scrollable {\n max-height: @pre-scrollable-max-height;\n overflow-y: scroll;\n}\n","//\n// Grid system\n// --------------------------------------------------\n\n\n// Container widths\n//\n// Set the container width, and override it for fixed navbars in media queries.\n\n.container {\n .container-fixed();\n\n @media (min-width: @screen-sm-min) {\n width: @container-sm;\n }\n @media (min-width: @screen-md-min) {\n width: @container-md;\n }\n @media (min-width: @screen-lg-min) {\n width: @container-lg;\n }\n}\n\n\n// Fluid container\n//\n// Utilizes the mixin meant for fixed width containers, but without any defined\n// width for fluid, full width layouts.\n\n.container-fluid {\n .container-fixed();\n}\n\n\n// Row\n//\n// Rows contain and clear the floats of your columns.\n\n.row {\n .make-row();\n}\n\n\n// Columns\n//\n// Common styles for small and large grid columns\n\n.make-grid-columns();\n\n\n// Extra small grid\n//\n// Columns, offsets, pushes, and pulls for extra small devices like\n// smartphones.\n\n.make-grid(xs);\n\n\n// Small grid\n//\n// Columns, offsets, pushes, and pulls for the small device range, from phones\n// to tablets.\n\n@media (min-width: @screen-sm-min) {\n .make-grid(sm);\n}\n\n\n// Medium grid\n//\n// Columns, offsets, pushes, and pulls for the desktop device range.\n\n@media (min-width: @screen-md-min) {\n .make-grid(md);\n}\n\n\n// Large grid\n//\n// Columns, offsets, pushes, and pulls for the large desktop device range.\n\n@media (min-width: @screen-lg-min) {\n .make-grid(lg);\n}\n","// Grid system\n//\n// Generate semantic grid columns with these mixins.\n\n// Centered container element\n.container-fixed(@gutter: @grid-gutter-width) {\n margin-right: auto;\n margin-left: auto;\n padding-left: floor((@gutter / 2));\n padding-right: ceil((@gutter / 2));\n &:extend(.clearfix all);\n}\n\n// Creates a wrapper for a series of columns\n.make-row(@gutter: @grid-gutter-width) {\n margin-left: ceil((@gutter / -2));\n margin-right: floor((@gutter / -2));\n &:extend(.clearfix all);\n}\n\n// Generate the extra small columns\n.make-xs-column(@columns; @gutter: @grid-gutter-width) {\n position: relative;\n float: left;\n width: percentage((@columns / @grid-columns));\n min-height: 1px;\n padding-left: (@gutter / 2);\n padding-right: (@gutter / 2);\n}\n.make-xs-column-offset(@columns) {\n margin-left: percentage((@columns / @grid-columns));\n}\n.make-xs-column-push(@columns) {\n left: percentage((@columns / @grid-columns));\n}\n.make-xs-column-pull(@columns) {\n right: percentage((@columns / @grid-columns));\n}\n\n// Generate the small columns\n.make-sm-column(@columns; @gutter: @grid-gutter-width) {\n position: relative;\n min-height: 1px;\n padding-left: (@gutter / 2);\n padding-right: (@gutter / 2);\n\n @media (min-width: @screen-sm-min) {\n float: left;\n width: percentage((@columns / @grid-columns));\n }\n}\n.make-sm-column-offset(@columns) {\n @media (min-width: @screen-sm-min) {\n margin-left: percentage((@columns / @grid-columns));\n }\n}\n.make-sm-column-push(@columns) {\n @media (min-width: @screen-sm-min) {\n left: percentage((@columns / @grid-columns));\n }\n}\n.make-sm-column-pull(@columns) {\n @media (min-width: @screen-sm-min) {\n right: percentage((@columns / @grid-columns));\n }\n}\n\n// Generate the medium columns\n.make-md-column(@columns; @gutter: @grid-gutter-width) {\n position: relative;\n min-height: 1px;\n padding-left: (@gutter / 2);\n padding-right: (@gutter / 2);\n\n @media (min-width: @screen-md-min) {\n float: left;\n width: percentage((@columns / @grid-columns));\n }\n}\n.make-md-column-offset(@columns) {\n @media (min-width: @screen-md-min) {\n margin-left: percentage((@columns / @grid-columns));\n }\n}\n.make-md-column-push(@columns) {\n @media (min-width: @screen-md-min) {\n left: percentage((@columns / @grid-columns));\n }\n}\n.make-md-column-pull(@columns) {\n @media (min-width: @screen-md-min) {\n right: percentage((@columns / @grid-columns));\n }\n}\n\n// Generate the large columns\n.make-lg-column(@columns; @gutter: @grid-gutter-width) {\n position: relative;\n min-height: 1px;\n padding-left: (@gutter / 2);\n padding-right: (@gutter / 2);\n\n @media (min-width: @screen-lg-min) {\n float: left;\n width: percentage((@columns / @grid-columns));\n }\n}\n.make-lg-column-offset(@columns) {\n @media (min-width: @screen-lg-min) {\n margin-left: percentage((@columns / @grid-columns));\n }\n}\n.make-lg-column-push(@columns) {\n @media (min-width: @screen-lg-min) {\n left: percentage((@columns / @grid-columns));\n }\n}\n.make-lg-column-pull(@columns) {\n @media (min-width: @screen-lg-min) {\n right: percentage((@columns / @grid-columns));\n }\n}\n","// Framework grid generation\n//\n// Used only by Bootstrap to generate the correct number of grid classes given\n// any value of `@grid-columns`.\n\n.make-grid-columns() {\n // Common styles for all sizes of grid columns, widths 1-12\n .col(@index) { // initial\n @item: ~\".col-xs-@{index}, .col-sm-@{index}, .col-md-@{index}, .col-lg-@{index}\";\n .col((@index + 1), @item);\n }\n .col(@index, @list) when (@index =< @grid-columns) { // general; \"=<\" isn't a typo\n @item: ~\".col-xs-@{index}, .col-sm-@{index}, .col-md-@{index}, .col-lg-@{index}\";\n .col((@index + 1), ~\"@{list}, @{item}\");\n }\n .col(@index, @list) when (@index > @grid-columns) { // terminal\n @{list} {\n position: relative;\n // Prevent columns from collapsing when empty\n min-height: 1px;\n // Inner gutter via padding\n padding-left: ceil((@grid-gutter-width / 2));\n padding-right: floor((@grid-gutter-width / 2));\n }\n }\n .col(1); // kickstart it\n}\n\n.float-grid-columns(@class) {\n .col(@index) { // initial\n @item: ~\".col-@{class}-@{index}\";\n .col((@index + 1), @item);\n }\n .col(@index, @list) when (@index =< @grid-columns) { // general\n @item: ~\".col-@{class}-@{index}\";\n .col((@index + 1), ~\"@{list}, @{item}\");\n }\n .col(@index, @list) when (@index > @grid-columns) { // terminal\n @{list} {\n float: left;\n }\n }\n .col(1); // kickstart it\n}\n\n.calc-grid-column(@index, @class, @type) when (@type = width) and (@index > 0) {\n .col-@{class}-@{index} {\n width: percentage((@index / @grid-columns));\n }\n}\n.calc-grid-column(@index, @class, @type) when (@type = push) and (@index > 0) {\n .col-@{class}-push-@{index} {\n left: percentage((@index / @grid-columns));\n }\n}\n.calc-grid-column(@index, @class, @type) when (@type = push) and (@index = 0) {\n .col-@{class}-push-0 {\n left: auto;\n }\n}\n.calc-grid-column(@index, @class, @type) when (@type = pull) and (@index > 0) {\n .col-@{class}-pull-@{index} {\n right: percentage((@index / @grid-columns));\n }\n}\n.calc-grid-column(@index, @class, @type) when (@type = pull) and (@index = 0) {\n .col-@{class}-pull-0 {\n right: auto;\n }\n}\n.calc-grid-column(@index, @class, @type) when (@type = offset) {\n .col-@{class}-offset-@{index} {\n margin-left: percentage((@index / @grid-columns));\n }\n}\n\n// Basic looping in LESS\n.loop-grid-columns(@index, @class, @type) when (@index >= 0) {\n .calc-grid-column(@index, @class, @type);\n // next iteration\n .loop-grid-columns((@index - 1), @class, @type);\n}\n\n// Create grid for specific class\n.make-grid(@class) {\n .float-grid-columns(@class);\n .loop-grid-columns(@grid-columns, @class, width);\n .loop-grid-columns(@grid-columns, @class, pull);\n .loop-grid-columns(@grid-columns, @class, push);\n .loop-grid-columns(@grid-columns, @class, offset);\n}\n","//\n// Tables\n// --------------------------------------------------\n\n\ntable {\n background-color: @table-bg;\n}\ncaption {\n padding-top: @table-cell-padding;\n padding-bottom: @table-cell-padding;\n color: @text-muted;\n text-align: left;\n}\nth {\n text-align: left;\n}\n\n\n// Baseline styles\n\n.table {\n width: 100%;\n max-width: 100%;\n margin-bottom: @line-height-computed;\n // Cells\n > thead,\n > tbody,\n > tfoot {\n > tr {\n > th,\n > td {\n padding: @table-cell-padding;\n line-height: @line-height-base;\n vertical-align: top;\n border-top: 1px solid @table-border-color;\n }\n }\n }\n // Bottom align for column headings\n > thead > tr > th {\n vertical-align: bottom;\n border-bottom: 2px solid @table-border-color;\n }\n // Remove top border from thead by default\n > caption + thead,\n > colgroup + thead,\n > thead:first-child {\n > tr:first-child {\n > th,\n > td {\n border-top: 0;\n }\n }\n }\n // Account for multiple tbody instances\n > tbody + tbody {\n border-top: 2px solid @table-border-color;\n }\n\n // Nesting\n .table {\n background-color: @body-bg;\n }\n}\n\n\n// Condensed table w/ half padding\n\n.table-condensed {\n > thead,\n > tbody,\n > tfoot {\n > tr {\n > th,\n > td {\n padding: @table-condensed-cell-padding;\n }\n }\n }\n}\n\n\n// Bordered version\n//\n// Add borders all around the table and between all the columns.\n\n.table-bordered {\n border: 1px solid @table-border-color;\n > thead,\n > tbody,\n > tfoot {\n > tr {\n > th,\n > td {\n border: 1px solid @table-border-color;\n }\n }\n }\n > thead > tr {\n > th,\n > td {\n border-bottom-width: 2px;\n }\n }\n}\n\n\n// Zebra-striping\n//\n// Default zebra-stripe styles (alternating gray and transparent backgrounds)\n\n.table-striped {\n > tbody > tr:nth-of-type(odd) {\n background-color: @table-bg-accent;\n }\n}\n\n\n// Hover effect\n//\n// Placed here since it has to come after the potential zebra striping\n\n.table-hover {\n > tbody > tr:hover {\n background-color: @table-bg-hover;\n }\n}\n\n\n// Table cell sizing\n//\n// Reset default table behavior\n\ntable col[class*=\"col-\"] {\n position: static; // Prevent border hiding in Firefox and IE9-11 (see https://github.com/twbs/bootstrap/issues/11623)\n float: none;\n display: table-column;\n}\ntable {\n td,\n th {\n &[class*=\"col-\"] {\n position: static; // Prevent border hiding in Firefox and IE9-11 (see https://github.com/twbs/bootstrap/issues/11623)\n float: none;\n display: table-cell;\n }\n }\n}\n\n\n// Table backgrounds\n//\n// Exact selectors below required to override `.table-striped` and prevent\n// inheritance to nested tables.\n\n// Generate the contextual variants\n.table-row-variant(active; @table-bg-active);\n.table-row-variant(success; @state-success-bg);\n.table-row-variant(info; @state-info-bg);\n.table-row-variant(warning; @state-warning-bg);\n.table-row-variant(danger; @state-danger-bg);\n\n\n// Responsive tables\n//\n// Wrap your tables in `.table-responsive` and we'll make them mobile friendly\n// by enabling horizontal scrolling. Only applies <768px. Everything above that\n// will display normally.\n\n.table-responsive {\n overflow-x: auto;\n min-height: 0.01%; // Workaround for IE9 bug (see https://github.com/twbs/bootstrap/issues/14837)\n\n @media screen and (max-width: @screen-xs-max) {\n width: 100%;\n margin-bottom: (@line-height-computed * 0.75);\n overflow-y: hidden;\n -ms-overflow-style: -ms-autohiding-scrollbar;\n border: 1px solid @table-border-color;\n\n // Tighten up spacing\n > .table {\n margin-bottom: 0;\n\n // Ensure the content doesn't wrap\n > thead,\n > tbody,\n > tfoot {\n > tr {\n > th,\n > td {\n white-space: nowrap;\n }\n }\n }\n }\n\n // Special overrides for the bordered tables\n > .table-bordered {\n border: 0;\n\n // Nuke the appropriate borders so that the parent can handle them\n > thead,\n > tbody,\n > tfoot {\n > tr {\n > th:first-child,\n > td:first-child {\n border-left: 0;\n }\n > th:last-child,\n > td:last-child {\n border-right: 0;\n }\n }\n }\n\n // Only nuke the last row's bottom-border in `tbody` and `tfoot` since\n // chances are there will be only one `tr` in a `thead` and that would\n // remove the border altogether.\n > tbody,\n > tfoot {\n > tr:last-child {\n > th,\n > td {\n border-bottom: 0;\n }\n }\n }\n\n }\n }\n}\n","// Tables\n\n.table-row-variant(@state; @background) {\n // Exact selectors below required to override `.table-striped` and prevent\n // inheritance to nested tables.\n .table > thead > tr,\n .table > tbody > tr,\n .table > tfoot > tr {\n > td.@{state},\n > th.@{state},\n &.@{state} > td,\n &.@{state} > th {\n background-color: @background;\n }\n }\n\n // Hover states for `.table-hover`\n // Note: this is not available for cells or rows within `thead` or `tfoot`.\n .table-hover > tbody > tr {\n > td.@{state}:hover,\n > th.@{state}:hover,\n &.@{state}:hover > td,\n &:hover > .@{state},\n &.@{state}:hover > th {\n background-color: darken(@background, 5%);\n }\n }\n}\n","//\n// Forms\n// --------------------------------------------------\n\n\n// Normalize non-controls\n//\n// Restyle and baseline non-control form elements.\n\nfieldset {\n padding: 0;\n margin: 0;\n border: 0;\n // Chrome and Firefox set a `min-width: min-content;` on fieldsets,\n // so we reset that to ensure it behaves more like a standard block element.\n // See https://github.com/twbs/bootstrap/issues/12359.\n min-width: 0;\n}\n\nlegend {\n display: block;\n width: 100%;\n padding: 0;\n margin-bottom: @line-height-computed;\n font-size: (@font-size-base * 1.5);\n line-height: inherit;\n color: @legend-color;\n border: 0;\n border-bottom: 1px solid @legend-border-color;\n}\n\nlabel {\n display: inline-block;\n max-width: 100%; // Force IE8 to wrap long content (see https://github.com/twbs/bootstrap/issues/13141)\n margin-bottom: 5px;\n font-weight: bold;\n}\n\n\n// Normalize form controls\n//\n// While most of our form styles require extra classes, some basic normalization\n// is required to ensure optimum display with or without those classes to better\n// address browser inconsistencies.\n\n// Override content-box in Normalize (* isn't specific enough)\ninput[type=\"search\"] {\n .box-sizing(border-box);\n}\n\n// Position radios and checkboxes better\ninput[type=\"radio\"],\ninput[type=\"checkbox\"] {\n margin: 4px 0 0;\n margin-top: 1px \\9; // IE8-9\n line-height: normal;\n}\n\ninput[type=\"file\"] {\n display: block;\n}\n\n// Make range inputs behave like textual form controls\ninput[type=\"range\"] {\n display: block;\n width: 100%;\n}\n\n// Make multiple select elements height not fixed\nselect[multiple],\nselect[size] {\n height: auto;\n}\n\n// Focus for file, radio, and checkbox\ninput[type=\"file\"]:focus,\ninput[type=\"radio\"]:focus,\ninput[type=\"checkbox\"]:focus {\n .tab-focus();\n}\n\n// Adjust output element\noutput {\n display: block;\n padding-top: (@padding-base-vertical + 1);\n font-size: @font-size-base;\n line-height: @line-height-base;\n color: @input-color;\n}\n\n\n// Common form controls\n//\n// Shared size and type resets for form controls. Apply `.form-control` to any\n// of the following form controls:\n//\n// select\n// textarea\n// input[type=\"text\"]\n// input[type=\"password\"]\n// input[type=\"datetime\"]\n// input[type=\"datetime-local\"]\n// input[type=\"date\"]\n// input[type=\"month\"]\n// input[type=\"time\"]\n// input[type=\"week\"]\n// input[type=\"number\"]\n// input[type=\"email\"]\n// input[type=\"url\"]\n// input[type=\"search\"]\n// input[type=\"tel\"]\n// input[type=\"color\"]\n\n.form-control {\n display: block;\n width: 100%;\n height: @input-height-base; // Make inputs at least the height of their button counterpart (base line-height + padding + border)\n padding: @padding-base-vertical @padding-base-horizontal;\n font-size: @font-size-base;\n line-height: @line-height-base;\n color: @input-color;\n background-color: @input-bg;\n background-image: none; // Reset unusual Firefox-on-Android default style; see https://github.com/necolas/normalize.css/issues/214\n border: 1px solid @input-border;\n border-radius: @input-border-radius; // Note: This has no effect on s in CSS.\n .box-shadow(inset 0 1px 1px rgba(0,0,0,.075));\n .transition(~\"border-color ease-in-out .15s, box-shadow ease-in-out .15s\");\n\n // Customize the `:focus` state to imitate native WebKit styles.\n .form-control-focus();\n\n // Placeholder\n .placeholder();\n\n // Unstyle the caret on ``\n// element gets special love because it's special, and that's a fact!\n.input-size(@input-height; @padding-vertical; @padding-horizontal; @font-size; @line-height; @border-radius) {\n height: @input-height;\n padding: @padding-vertical @padding-horizontal;\n font-size: @font-size;\n line-height: @line-height;\n border-radius: @border-radius;\n\n select& {\n height: @input-height;\n line-height: @input-height;\n }\n\n textarea&,\n select[multiple]& {\n height: auto;\n }\n}\n","//\n// Buttons\n// --------------------------------------------------\n\n\n// Base styles\n// --------------------------------------------------\n\n.btn {\n display: inline-block;\n margin-bottom: 0; // For input.btn\n font-weight: @btn-font-weight;\n text-align: center;\n vertical-align: middle;\n touch-action: manipulation;\n cursor: pointer;\n background-image: none; // Reset unusual Firefox-on-Android default style; see https://github.com/necolas/normalize.css/issues/214\n border: 1px solid transparent;\n white-space: nowrap;\n .button-size(@padding-base-vertical; @padding-base-horizontal; @font-size-base; @line-height-base; @btn-border-radius-base);\n .user-select(none);\n\n &,\n &:active,\n &.active {\n &:focus,\n &.focus {\n .tab-focus();\n }\n }\n\n &:hover,\n &:focus,\n &.focus {\n color: @btn-default-color;\n text-decoration: none;\n }\n\n &:active,\n &.active {\n outline: 0;\n background-image: none;\n .box-shadow(inset 0 3px 5px rgba(0,0,0,.125));\n }\n\n &.disabled,\n &[disabled],\n fieldset[disabled] & {\n cursor: @cursor-disabled;\n .opacity(.65);\n .box-shadow(none);\n }\n\n a& {\n &.disabled,\n fieldset[disabled] & {\n pointer-events: none; // Future-proof disabling of clicks on `` elements\n }\n }\n}\n\n\n// Alternate buttons\n// --------------------------------------------------\n\n.btn-default {\n .button-variant(@btn-default-color; @btn-default-bg; @btn-default-border);\n}\n.btn-primary {\n .button-variant(@btn-primary-color; @btn-primary-bg; @btn-primary-border);\n}\n// Success appears as green\n.btn-success {\n .button-variant(@btn-success-color; @btn-success-bg; @btn-success-border);\n}\n// Info appears as blue-green\n.btn-info {\n .button-variant(@btn-info-color; @btn-info-bg; @btn-info-border);\n}\n// Warning appears as orange\n.btn-warning {\n .button-variant(@btn-warning-color; @btn-warning-bg; @btn-warning-border);\n}\n// Danger and error appear as red\n.btn-danger {\n .button-variant(@btn-danger-color; @btn-danger-bg; @btn-danger-border);\n}\n\n\n// Link buttons\n// -------------------------\n\n// Make a button look and behave like a link\n.btn-link {\n color: @link-color;\n font-weight: normal;\n border-radius: 0;\n\n &,\n &:active,\n &.active,\n &[disabled],\n fieldset[disabled] & {\n background-color: transparent;\n .box-shadow(none);\n }\n &,\n &:hover,\n &:focus,\n &:active {\n border-color: transparent;\n }\n &:hover,\n &:focus {\n color: @link-hover-color;\n text-decoration: @link-hover-decoration;\n background-color: transparent;\n }\n &[disabled],\n fieldset[disabled] & {\n &:hover,\n &:focus {\n color: @btn-link-disabled-color;\n text-decoration: none;\n }\n }\n}\n\n\n// Button Sizes\n// --------------------------------------------------\n\n.btn-lg {\n // line-height: ensure even-numbered height of button next to large input\n .button-size(@padding-large-vertical; @padding-large-horizontal; @font-size-large; @line-height-large; @btn-border-radius-large);\n}\n.btn-sm {\n // line-height: ensure proper height of button next to small input\n .button-size(@padding-small-vertical; @padding-small-horizontal; @font-size-small; @line-height-small; @btn-border-radius-small);\n}\n.btn-xs {\n .button-size(@padding-xs-vertical; @padding-xs-horizontal; @font-size-small; @line-height-small; @btn-border-radius-small);\n}\n\n\n// Block button\n// --------------------------------------------------\n\n.btn-block {\n display: block;\n width: 100%;\n}\n\n// Vertically space out multiple block buttons\n.btn-block + .btn-block {\n margin-top: 5px;\n}\n\n// Specificity overrides\ninput[type=\"submit\"],\ninput[type=\"reset\"],\ninput[type=\"button\"] {\n &.btn-block {\n width: 100%;\n }\n}\n","// Button variants\n//\n// Easily pump out default styles, as well as :hover, :focus, :active,\n// and disabled options for all buttons\n\n.button-variant(@color; @background; @border) {\n color: @color;\n background-color: @background;\n border-color: @border;\n\n &:focus,\n &.focus {\n color: @color;\n background-color: darken(@background, 10%);\n border-color: darken(@border, 25%);\n }\n &:hover {\n color: @color;\n background-color: darken(@background, 10%);\n border-color: darken(@border, 12%);\n }\n &:active,\n &.active,\n .open > .dropdown-toggle& {\n color: @color;\n background-color: darken(@background, 10%);\n border-color: darken(@border, 12%);\n\n &:hover,\n &:focus,\n &.focus {\n color: @color;\n background-color: darken(@background, 17%);\n border-color: darken(@border, 25%);\n }\n }\n &:active,\n &.active,\n .open > .dropdown-toggle& {\n background-image: none;\n }\n &.disabled,\n &[disabled],\n fieldset[disabled] & {\n &:hover,\n &:focus,\n &.focus {\n background-color: @background;\n border-color: @border;\n }\n }\n\n .badge {\n color: @background;\n background-color: @color;\n }\n}\n\n// Button sizes\n.button-size(@padding-vertical; @padding-horizontal; @font-size; @line-height; @border-radius) {\n padding: @padding-vertical @padding-horizontal;\n font-size: @font-size;\n line-height: @line-height;\n border-radius: @border-radius;\n}\n","// Opacity\n\n.opacity(@opacity) {\n opacity: @opacity;\n // IE8 filter\n @opacity-ie: (@opacity * 100);\n filter: ~\"alpha(opacity=@{opacity-ie})\";\n}\n","//\n// Component animations\n// --------------------------------------------------\n\n// Heads up!\n//\n// We don't use the `.opacity()` mixin here since it causes a bug with text\n// fields in IE7-8. Source: https://github.com/twbs/bootstrap/pull/3552.\n\n.fade {\n opacity: 0;\n .transition(opacity .15s linear);\n &.in {\n opacity: 1;\n }\n}\n\n.collapse {\n display: none;\n\n &.in { display: block; }\n tr&.in { display: table-row; }\n tbody&.in { display: table-row-group; }\n}\n\n.collapsing {\n position: relative;\n height: 0;\n overflow: hidden;\n .transition-property(~\"height, visibility\");\n .transition-duration(.35s);\n .transition-timing-function(ease);\n}\n","//\n// Dropdown menus\n// --------------------------------------------------\n\n\n// Dropdown arrow/caret\n.caret {\n display: inline-block;\n width: 0;\n height: 0;\n margin-left: 2px;\n vertical-align: middle;\n border-top: @caret-width-base dashed;\n border-top: @caret-width-base solid ~\"\\9\"; // IE8\n border-right: @caret-width-base solid transparent;\n border-left: @caret-width-base solid transparent;\n}\n\n// The dropdown wrapper (div)\n.dropup,\n.dropdown {\n position: relative;\n}\n\n// Prevent the focus on the dropdown toggle when closing dropdowns\n.dropdown-toggle:focus {\n outline: 0;\n}\n\n// The dropdown menu (ul)\n.dropdown-menu {\n position: absolute;\n top: 100%;\n left: 0;\n z-index: @zindex-dropdown;\n display: none; // none by default, but block on \"open\" of the menu\n float: left;\n min-width: 160px;\n padding: 5px 0;\n margin: 2px 0 0; // override default ul\n list-style: none;\n font-size: @font-size-base;\n text-align: left; // Ensures proper alignment if parent has it changed (e.g., modal footer)\n background-color: @dropdown-bg;\n border: 1px solid @dropdown-fallback-border; // IE8 fallback\n border: 1px solid @dropdown-border;\n border-radius: @border-radius-base;\n .box-shadow(0 6px 12px rgba(0,0,0,.175));\n background-clip: padding-box;\n\n // Aligns the dropdown menu to right\n //\n // Deprecated as of 3.1.0 in favor of `.dropdown-menu-[dir]`\n &.pull-right {\n right: 0;\n left: auto;\n }\n\n // Dividers (basically an hr) within the dropdown\n .divider {\n .nav-divider(@dropdown-divider-bg);\n }\n\n // Links within the dropdown menu\n > li > a {\n display: block;\n padding: 3px 20px;\n clear: both;\n font-weight: normal;\n line-height: @line-height-base;\n color: @dropdown-link-color;\n white-space: nowrap; // prevent links from randomly breaking onto new lines\n }\n}\n\n// Hover/Focus state\n.dropdown-menu > li > a {\n &:hover,\n &:focus {\n text-decoration: none;\n color: @dropdown-link-hover-color;\n background-color: @dropdown-link-hover-bg;\n }\n}\n\n// Active state\n.dropdown-menu > .active > a {\n &,\n &:hover,\n &:focus {\n color: @dropdown-link-active-color;\n text-decoration: none;\n outline: 0;\n background-color: @dropdown-link-active-bg;\n }\n}\n\n// Disabled state\n//\n// Gray out text and ensure the hover/focus state remains gray\n\n.dropdown-menu > .disabled > a {\n &,\n &:hover,\n &:focus {\n color: @dropdown-link-disabled-color;\n }\n\n // Nuke hover/focus effects\n &:hover,\n &:focus {\n text-decoration: none;\n background-color: transparent;\n background-image: none; // Remove CSS gradient\n .reset-filter();\n cursor: @cursor-disabled;\n }\n}\n\n// Open state for the dropdown\n.open {\n // Show the menu\n > .dropdown-menu {\n display: block;\n }\n\n // Remove the outline when :focus is triggered\n > a {\n outline: 0;\n }\n}\n\n// Menu positioning\n//\n// Add extra class to `.dropdown-menu` to flip the alignment of the dropdown\n// menu with the parent.\n.dropdown-menu-right {\n left: auto; // Reset the default from `.dropdown-menu`\n right: 0;\n}\n// With v3, we enabled auto-flipping if you have a dropdown within a right\n// aligned nav component. To enable the undoing of that, we provide an override\n// to restore the default dropdown menu alignment.\n//\n// This is only for left-aligning a dropdown menu within a `.navbar-right` or\n// `.pull-right` nav component.\n.dropdown-menu-left {\n left: 0;\n right: auto;\n}\n\n// Dropdown section headers\n.dropdown-header {\n display: block;\n padding: 3px 20px;\n font-size: @font-size-small;\n line-height: @line-height-base;\n color: @dropdown-header-color;\n white-space: nowrap; // as with > li > a\n}\n\n// Backdrop to catch body clicks on mobile, etc.\n.dropdown-backdrop {\n position: fixed;\n left: 0;\n right: 0;\n bottom: 0;\n top: 0;\n z-index: (@zindex-dropdown - 10);\n}\n\n// Right aligned dropdowns\n.pull-right > .dropdown-menu {\n right: 0;\n left: auto;\n}\n\n// Allow for dropdowns to go bottom up (aka, dropup-menu)\n//\n// Just add .dropup after the standard .dropdown class and you're set, bro.\n// TODO: abstract this so that the navbar fixed styles are not placed here?\n\n.dropup,\n.navbar-fixed-bottom .dropdown {\n // Reverse the caret\n .caret {\n border-top: 0;\n border-bottom: @caret-width-base dashed;\n border-bottom: @caret-width-base solid ~\"\\9\"; // IE8\n content: \"\";\n }\n // Different positioning for bottom up menu\n .dropdown-menu {\n top: auto;\n bottom: 100%;\n margin-bottom: 2px;\n }\n}\n\n\n// Component alignment\n//\n// Reiterate per navbar.less and the modified component alignment there.\n\n@media (min-width: @grid-float-breakpoint) {\n .navbar-right {\n .dropdown-menu {\n .dropdown-menu-right();\n }\n // Necessary for overrides of the default right aligned menu.\n // Will remove come v4 in all likelihood.\n .dropdown-menu-left {\n .dropdown-menu-left();\n }\n }\n}\n","// Horizontal dividers\n//\n// Dividers (basically an hr) within dropdowns and nav lists\n\n.nav-divider(@color: #e5e5e5) {\n height: 1px;\n margin: ((@line-height-computed / 2) - 1) 0;\n overflow: hidden;\n background-color: @color;\n}\n","// Reset filters for IE\n//\n// When you need to remove a gradient background, do not forget to use this to reset\n// the IE filter for IE9 and below.\n\n.reset-filter() {\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(enabled = false)\"));\n}\n","//\n// Button groups\n// --------------------------------------------------\n\n// Make the div behave like a button\n.btn-group,\n.btn-group-vertical {\n position: relative;\n display: inline-block;\n vertical-align: middle; // match .btn alignment given font-size hack above\n > .btn {\n position: relative;\n float: left;\n // Bring the \"active\" button to the front\n &:hover,\n &:focus,\n &:active,\n &.active {\n z-index: 2;\n }\n }\n}\n\n// Prevent double borders when buttons are next to each other\n.btn-group {\n .btn + .btn,\n .btn + .btn-group,\n .btn-group + .btn,\n .btn-group + .btn-group {\n margin-left: -1px;\n }\n}\n\n// Optional: Group multiple button groups together for a toolbar\n.btn-toolbar {\n margin-left: -5px; // Offset the first child's margin\n &:extend(.clearfix all);\n\n .btn,\n .btn-group,\n .input-group {\n float: left;\n }\n > .btn,\n > .btn-group,\n > .input-group {\n margin-left: 5px;\n }\n}\n\n.btn-group > .btn:not(:first-child):not(:last-child):not(.dropdown-toggle) {\n border-radius: 0;\n}\n\n// Set corners individual because sometimes a single button can be in a .btn-group and we need :first-child and :last-child to both match\n.btn-group > .btn:first-child {\n margin-left: 0;\n &:not(:last-child):not(.dropdown-toggle) {\n .border-right-radius(0);\n }\n}\n// Need .dropdown-toggle since :last-child doesn't apply, given that a .dropdown-menu is used immediately after it\n.btn-group > .btn:last-child:not(:first-child),\n.btn-group > .dropdown-toggle:not(:first-child) {\n .border-left-radius(0);\n}\n\n// Custom edits for including btn-groups within btn-groups (useful for including dropdown buttons within a btn-group)\n.btn-group > .btn-group {\n float: left;\n}\n.btn-group > .btn-group:not(:first-child):not(:last-child) > .btn {\n border-radius: 0;\n}\n.btn-group > .btn-group:first-child:not(:last-child) {\n > .btn:last-child,\n > .dropdown-toggle {\n .border-right-radius(0);\n }\n}\n.btn-group > .btn-group:last-child:not(:first-child) > .btn:first-child {\n .border-left-radius(0);\n}\n\n// On active and open, don't show outline\n.btn-group .dropdown-toggle:active,\n.btn-group.open .dropdown-toggle {\n outline: 0;\n}\n\n\n// Sizing\n//\n// Remix the default button sizing classes into new ones for easier manipulation.\n\n.btn-group-xs > .btn { &:extend(.btn-xs); }\n.btn-group-sm > .btn { &:extend(.btn-sm); }\n.btn-group-lg > .btn { &:extend(.btn-lg); }\n\n\n// Split button dropdowns\n// ----------------------\n\n// Give the line between buttons some depth\n.btn-group > .btn + .dropdown-toggle {\n padding-left: 8px;\n padding-right: 8px;\n}\n.btn-group > .btn-lg + .dropdown-toggle {\n padding-left: 12px;\n padding-right: 12px;\n}\n\n// The clickable button for toggling the menu\n// Remove the gradient and set the same inset shadow as the :active state\n.btn-group.open .dropdown-toggle {\n .box-shadow(inset 0 3px 5px rgba(0,0,0,.125));\n\n // Show no shadow for `.btn-link` since it has no other button styles.\n &.btn-link {\n .box-shadow(none);\n }\n}\n\n\n// Reposition the caret\n.btn .caret {\n margin-left: 0;\n}\n// Carets in other button sizes\n.btn-lg .caret {\n border-width: @caret-width-large @caret-width-large 0;\n border-bottom-width: 0;\n}\n// Upside down carets for .dropup\n.dropup .btn-lg .caret {\n border-width: 0 @caret-width-large @caret-width-large;\n}\n\n\n// Vertical button groups\n// ----------------------\n\n.btn-group-vertical {\n > .btn,\n > .btn-group,\n > .btn-group > .btn {\n display: block;\n float: none;\n width: 100%;\n max-width: 100%;\n }\n\n // Clear floats so dropdown menus can be properly placed\n > .btn-group {\n &:extend(.clearfix all);\n > .btn {\n float: none;\n }\n }\n\n > .btn + .btn,\n > .btn + .btn-group,\n > .btn-group + .btn,\n > .btn-group + .btn-group {\n margin-top: -1px;\n margin-left: 0;\n }\n}\n\n.btn-group-vertical > .btn {\n &:not(:first-child):not(:last-child) {\n border-radius: 0;\n }\n &:first-child:not(:last-child) {\n .border-top-radius(@btn-border-radius-base);\n .border-bottom-radius(0);\n }\n &:last-child:not(:first-child) {\n .border-top-radius(0);\n .border-bottom-radius(@btn-border-radius-base);\n }\n}\n.btn-group-vertical > .btn-group:not(:first-child):not(:last-child) > .btn {\n border-radius: 0;\n}\n.btn-group-vertical > .btn-group:first-child:not(:last-child) {\n > .btn:last-child,\n > .dropdown-toggle {\n .border-bottom-radius(0);\n }\n}\n.btn-group-vertical > .btn-group:last-child:not(:first-child) > .btn:first-child {\n .border-top-radius(0);\n}\n\n\n// Justified button groups\n// ----------------------\n\n.btn-group-justified {\n display: table;\n width: 100%;\n table-layout: fixed;\n border-collapse: separate;\n > .btn,\n > .btn-group {\n float: none;\n display: table-cell;\n width: 1%;\n }\n > .btn-group .btn {\n width: 100%;\n }\n\n > .btn-group .dropdown-menu {\n left: auto;\n }\n}\n\n\n// Checkbox and radio options\n//\n// In order to support the browser's form validation feedback, powered by the\n// `required` attribute, we have to \"hide\" the inputs via `clip`. We cannot use\n// `display: none;` or `visibility: hidden;` as that also hides the popover.\n// Simply visually hiding the inputs via `opacity` would leave them clickable in\n// certain cases which is prevented by using `clip` and `pointer-events`.\n// This way, we ensure a DOM element is visible to position the popover from.\n//\n// See https://github.com/twbs/bootstrap/pull/12794 and\n// https://github.com/twbs/bootstrap/pull/14559 for more information.\n\n[data-toggle=\"buttons\"] {\n > .btn,\n > .btn-group > .btn {\n input[type=\"radio\"],\n input[type=\"checkbox\"] {\n position: absolute;\n clip: rect(0,0,0,0);\n pointer-events: none;\n }\n }\n}\n","// Single side border-radius\n\n.border-top-radius(@radius) {\n border-top-right-radius: @radius;\n border-top-left-radius: @radius;\n}\n.border-right-radius(@radius) {\n border-bottom-right-radius: @radius;\n border-top-right-radius: @radius;\n}\n.border-bottom-radius(@radius) {\n border-bottom-right-radius: @radius;\n border-bottom-left-radius: @radius;\n}\n.border-left-radius(@radius) {\n border-bottom-left-radius: @radius;\n border-top-left-radius: @radius;\n}\n","//\n// Input groups\n// --------------------------------------------------\n\n// Base styles\n// -------------------------\n.input-group {\n position: relative; // For dropdowns\n display: table;\n border-collapse: separate; // prevent input groups from inheriting border styles from table cells when placed within a table\n\n // Undo padding and float of grid classes\n &[class*=\"col-\"] {\n float: none;\n padding-left: 0;\n padding-right: 0;\n }\n\n .form-control {\n // Ensure that the input is always above the *appended* addon button for\n // proper border colors.\n position: relative;\n z-index: 2;\n\n // IE9 fubars the placeholder attribute in text inputs and the arrows on\n // select elements in input groups. To fix it, we float the input. Details:\n // https://github.com/twbs/bootstrap/issues/11561#issuecomment-28936855\n float: left;\n\n width: 100%;\n margin-bottom: 0;\n\n &:focus {\n z-index: 3;\n }\n }\n}\n\n// Sizing options\n//\n// Remix the default form control sizing classes into new ones for easier\n// manipulation.\n\n.input-group-lg > .form-control,\n.input-group-lg > .input-group-addon,\n.input-group-lg > .input-group-btn > .btn {\n .input-lg();\n}\n.input-group-sm > .form-control,\n.input-group-sm > .input-group-addon,\n.input-group-sm > .input-group-btn > .btn {\n .input-sm();\n}\n\n\n// Display as table-cell\n// -------------------------\n.input-group-addon,\n.input-group-btn,\n.input-group .form-control {\n display: table-cell;\n\n &:not(:first-child):not(:last-child) {\n border-radius: 0;\n }\n}\n// Addon and addon wrapper for buttons\n.input-group-addon,\n.input-group-btn {\n width: 1%;\n white-space: nowrap;\n vertical-align: middle; // Match the inputs\n}\n\n// Text input groups\n// -------------------------\n.input-group-addon {\n padding: @padding-base-vertical @padding-base-horizontal;\n font-size: @font-size-base;\n font-weight: normal;\n line-height: 1;\n color: @input-color;\n text-align: center;\n background-color: @input-group-addon-bg;\n border: 1px solid @input-group-addon-border-color;\n border-radius: @input-border-radius;\n\n // Sizing\n &.input-sm {\n padding: @padding-small-vertical @padding-small-horizontal;\n font-size: @font-size-small;\n border-radius: @input-border-radius-small;\n }\n &.input-lg {\n padding: @padding-large-vertical @padding-large-horizontal;\n font-size: @font-size-large;\n border-radius: @input-border-radius-large;\n }\n\n // Nuke default margins from checkboxes and radios to vertically center within.\n input[type=\"radio\"],\n input[type=\"checkbox\"] {\n margin-top: 0;\n }\n}\n\n// Reset rounded corners\n.input-group .form-control:first-child,\n.input-group-addon:first-child,\n.input-group-btn:first-child > .btn,\n.input-group-btn:first-child > .btn-group > .btn,\n.input-group-btn:first-child > .dropdown-toggle,\n.input-group-btn:last-child > .btn:not(:last-child):not(.dropdown-toggle),\n.input-group-btn:last-child > .btn-group:not(:last-child) > .btn {\n .border-right-radius(0);\n}\n.input-group-addon:first-child {\n border-right: 0;\n}\n.input-group .form-control:last-child,\n.input-group-addon:last-child,\n.input-group-btn:last-child > .btn,\n.input-group-btn:last-child > .btn-group > .btn,\n.input-group-btn:last-child > .dropdown-toggle,\n.input-group-btn:first-child > .btn:not(:first-child),\n.input-group-btn:first-child > .btn-group:not(:first-child) > .btn {\n .border-left-radius(0);\n}\n.input-group-addon:last-child {\n border-left: 0;\n}\n\n// Button input groups\n// -------------------------\n.input-group-btn {\n position: relative;\n // Jankily prevent input button groups from wrapping with `white-space` and\n // `font-size` in combination with `inline-block` on buttons.\n font-size: 0;\n white-space: nowrap;\n\n // Negative margin for spacing, position for bringing hovered/focused/actived\n // element above the siblings.\n > .btn {\n position: relative;\n + .btn {\n margin-left: -1px;\n }\n // Bring the \"active\" button to the front\n &:hover,\n &:focus,\n &:active {\n z-index: 2;\n }\n }\n\n // Negative margin to only have a 1px border between the two\n &:first-child {\n > .btn,\n > .btn-group {\n margin-right: -1px;\n }\n }\n &:last-child {\n > .btn,\n > .btn-group {\n z-index: 2;\n margin-left: -1px;\n }\n }\n}\n","//\n// Navs\n// --------------------------------------------------\n\n\n// Base class\n// --------------------------------------------------\n\n.nav {\n margin-bottom: 0;\n padding-left: 0; // Override default ul/ol\n list-style: none;\n &:extend(.clearfix all);\n\n > li {\n position: relative;\n display: block;\n\n > a {\n position: relative;\n display: block;\n padding: @nav-link-padding;\n &:hover,\n &:focus {\n text-decoration: none;\n background-color: @nav-link-hover-bg;\n }\n }\n\n // Disabled state sets text to gray and nukes hover/tab effects\n &.disabled > a {\n color: @nav-disabled-link-color;\n\n &:hover,\n &:focus {\n color: @nav-disabled-link-hover-color;\n text-decoration: none;\n background-color: transparent;\n cursor: @cursor-disabled;\n }\n }\n }\n\n // Open dropdowns\n .open > a {\n &,\n &:hover,\n &:focus {\n background-color: @nav-link-hover-bg;\n border-color: @link-color;\n }\n }\n\n // Nav dividers (deprecated with v3.0.1)\n //\n // This should have been removed in v3 with the dropping of `.nav-list`, but\n // we missed it. We don't currently support this anywhere, but in the interest\n // of maintaining backward compatibility in case you use it, it's deprecated.\n .nav-divider {\n .nav-divider();\n }\n\n // Prevent IE8 from misplacing imgs\n //\n // See https://github.com/h5bp/html5-boilerplate/issues/984#issuecomment-3985989\n > li > a > img {\n max-width: none;\n }\n}\n\n\n// Tabs\n// -------------------------\n\n// Give the tabs something to sit on\n.nav-tabs {\n border-bottom: 1px solid @nav-tabs-border-color;\n > li {\n float: left;\n // Make the list-items overlay the bottom border\n margin-bottom: -1px;\n\n // Actual tabs (as links)\n > a {\n margin-right: 2px;\n line-height: @line-height-base;\n border: 1px solid transparent;\n border-radius: @border-radius-base @border-radius-base 0 0;\n &:hover {\n border-color: @nav-tabs-link-hover-border-color @nav-tabs-link-hover-border-color @nav-tabs-border-color;\n }\n }\n\n // Active state, and its :hover to override normal :hover\n &.active > a {\n &,\n &:hover,\n &:focus {\n color: @nav-tabs-active-link-hover-color;\n background-color: @nav-tabs-active-link-hover-bg;\n border: 1px solid @nav-tabs-active-link-hover-border-color;\n border-bottom-color: transparent;\n cursor: default;\n }\n }\n }\n // pulling this in mainly for less shorthand\n &.nav-justified {\n .nav-justified();\n .nav-tabs-justified();\n }\n}\n\n\n// Pills\n// -------------------------\n.nav-pills {\n > li {\n float: left;\n\n // Links rendered as pills\n > a {\n border-radius: @nav-pills-border-radius;\n }\n + li {\n margin-left: 2px;\n }\n\n // Active state\n &.active > a {\n &,\n &:hover,\n &:focus {\n color: @nav-pills-active-link-hover-color;\n background-color: @nav-pills-active-link-hover-bg;\n }\n }\n }\n}\n\n\n// Stacked pills\n.nav-stacked {\n > li {\n float: none;\n + li {\n margin-top: 2px;\n margin-left: 0; // no need for this gap between nav items\n }\n }\n}\n\n\n// Nav variations\n// --------------------------------------------------\n\n// Justified nav links\n// -------------------------\n\n.nav-justified {\n width: 100%;\n\n > li {\n float: none;\n > a {\n text-align: center;\n margin-bottom: 5px;\n }\n }\n\n > .dropdown .dropdown-menu {\n top: auto;\n left: auto;\n }\n\n @media (min-width: @screen-sm-min) {\n > li {\n display: table-cell;\n width: 1%;\n > a {\n margin-bottom: 0;\n }\n }\n }\n}\n\n// Move borders to anchors instead of bottom of list\n//\n// Mixin for adding on top the shared `.nav-justified` styles for our tabs\n.nav-tabs-justified {\n border-bottom: 0;\n\n > li > a {\n // Override margin from .nav-tabs\n margin-right: 0;\n border-radius: @border-radius-base;\n }\n\n > .active > a,\n > .active > a:hover,\n > .active > a:focus {\n border: 1px solid @nav-tabs-justified-link-border-color;\n }\n\n @media (min-width: @screen-sm-min) {\n > li > a {\n border-bottom: 1px solid @nav-tabs-justified-link-border-color;\n border-radius: @border-radius-base @border-radius-base 0 0;\n }\n > .active > a,\n > .active > a:hover,\n > .active > a:focus {\n border-bottom-color: @nav-tabs-justified-active-link-border-color;\n }\n }\n}\n\n\n// Tabbable tabs\n// -------------------------\n\n// Hide tabbable panes to start, show them when `.active`\n.tab-content {\n > .tab-pane {\n display: none;\n }\n > .active {\n display: block;\n }\n}\n\n\n// Dropdowns\n// -------------------------\n\n// Specific dropdowns\n.nav-tabs .dropdown-menu {\n // make dropdown border overlap tab border\n margin-top: -1px;\n // Remove the top rounded corners here since there is a hard edge above the menu\n .border-top-radius(0);\n}\n","//\n// Navbars\n// --------------------------------------------------\n\n\n// Wrapper and base class\n//\n// Provide a static navbar from which we expand to create full-width, fixed, and\n// other navbar variations.\n\n.navbar {\n position: relative;\n min-height: @navbar-height; // Ensure a navbar always shows (e.g., without a .navbar-brand in collapsed mode)\n margin-bottom: @navbar-margin-bottom;\n border: 1px solid transparent;\n\n // Prevent floats from breaking the navbar\n &:extend(.clearfix all);\n\n @media (min-width: @grid-float-breakpoint) {\n border-radius: @navbar-border-radius;\n }\n}\n\n\n// Navbar heading\n//\n// Groups `.navbar-brand` and `.navbar-toggle` into a single component for easy\n// styling of responsive aspects.\n\n.navbar-header {\n &:extend(.clearfix all);\n\n @media (min-width: @grid-float-breakpoint) {\n float: left;\n }\n}\n\n\n// Navbar collapse (body)\n//\n// Group your navbar content into this for easy collapsing and expanding across\n// various device sizes. By default, this content is collapsed when <768px, but\n// will expand past that for a horizontal display.\n//\n// To start (on mobile devices) the navbar links, forms, and buttons are stacked\n// vertically and include a `max-height` to overflow in case you have too much\n// content for the user's viewport.\n\n.navbar-collapse {\n overflow-x: visible;\n padding-right: @navbar-padding-horizontal;\n padding-left: @navbar-padding-horizontal;\n border-top: 1px solid transparent;\n box-shadow: inset 0 1px 0 rgba(255,255,255,.1);\n &:extend(.clearfix all);\n -webkit-overflow-scrolling: touch;\n\n &.in {\n overflow-y: auto;\n }\n\n @media (min-width: @grid-float-breakpoint) {\n width: auto;\n border-top: 0;\n box-shadow: none;\n\n &.collapse {\n display: block !important;\n height: auto !important;\n padding-bottom: 0; // Override default setting\n overflow: visible !important;\n }\n\n &.in {\n overflow-y: visible;\n }\n\n // Undo the collapse side padding for navbars with containers to ensure\n // alignment of right-aligned contents.\n .navbar-fixed-top &,\n .navbar-static-top &,\n .navbar-fixed-bottom & {\n padding-left: 0;\n padding-right: 0;\n }\n }\n}\n\n.navbar-fixed-top,\n.navbar-fixed-bottom {\n .navbar-collapse {\n max-height: @navbar-collapse-max-height;\n\n @media (max-device-width: @screen-xs-min) and (orientation: landscape) {\n max-height: 200px;\n }\n }\n}\n\n\n// Both navbar header and collapse\n//\n// When a container is present, change the behavior of the header and collapse.\n\n.container,\n.container-fluid {\n > .navbar-header,\n > .navbar-collapse {\n margin-right: -@navbar-padding-horizontal;\n margin-left: -@navbar-padding-horizontal;\n\n @media (min-width: @grid-float-breakpoint) {\n margin-right: 0;\n margin-left: 0;\n }\n }\n}\n\n\n//\n// Navbar alignment options\n//\n// Display the navbar across the entirety of the page or fixed it to the top or\n// bottom of the page.\n\n// Static top (unfixed, but 100% wide) navbar\n.navbar-static-top {\n z-index: @zindex-navbar;\n border-width: 0 0 1px;\n\n @media (min-width: @grid-float-breakpoint) {\n border-radius: 0;\n }\n}\n\n// Fix the top/bottom navbars when screen real estate supports it\n.navbar-fixed-top,\n.navbar-fixed-bottom {\n position: fixed;\n right: 0;\n left: 0;\n z-index: @zindex-navbar-fixed;\n\n // Undo the rounded corners\n @media (min-width: @grid-float-breakpoint) {\n border-radius: 0;\n }\n}\n.navbar-fixed-top {\n top: 0;\n border-width: 0 0 1px;\n}\n.navbar-fixed-bottom {\n bottom: 0;\n margin-bottom: 0; // override .navbar defaults\n border-width: 1px 0 0;\n}\n\n\n// Brand/project name\n\n.navbar-brand {\n float: left;\n padding: @navbar-padding-vertical @navbar-padding-horizontal;\n font-size: @font-size-large;\n line-height: @line-height-computed;\n height: @navbar-height;\n\n &:hover,\n &:focus {\n text-decoration: none;\n }\n\n > img {\n display: block;\n }\n\n @media (min-width: @grid-float-breakpoint) {\n .navbar > .container &,\n .navbar > .container-fluid & {\n margin-left: -@navbar-padding-horizontal;\n }\n }\n}\n\n\n// Navbar toggle\n//\n// Custom button for toggling the `.navbar-collapse`, powered by the collapse\n// JavaScript plugin.\n\n.navbar-toggle {\n position: relative;\n float: right;\n margin-right: @navbar-padding-horizontal;\n padding: 9px 10px;\n .navbar-vertical-align(34px);\n background-color: transparent;\n background-image: none; // Reset unusual Firefox-on-Android default style; see https://github.com/necolas/normalize.css/issues/214\n border: 1px solid transparent;\n border-radius: @border-radius-base;\n\n // We remove the `outline` here, but later compensate by attaching `:hover`\n // styles to `:focus`.\n &:focus {\n outline: 0;\n }\n\n // Bars\n .icon-bar {\n display: block;\n width: 22px;\n height: 2px;\n border-radius: 1px;\n }\n .icon-bar + .icon-bar {\n margin-top: 4px;\n }\n\n @media (min-width: @grid-float-breakpoint) {\n display: none;\n }\n}\n\n\n// Navbar nav links\n//\n// Builds on top of the `.nav` components with its own modifier class to make\n// the nav the full height of the horizontal nav (above 768px).\n\n.navbar-nav {\n margin: (@navbar-padding-vertical / 2) -@navbar-padding-horizontal;\n\n > li > a {\n padding-top: 10px;\n padding-bottom: 10px;\n line-height: @line-height-computed;\n }\n\n @media (max-width: @grid-float-breakpoint-max) {\n // Dropdowns get custom display when collapsed\n .open .dropdown-menu {\n position: static;\n float: none;\n width: auto;\n margin-top: 0;\n background-color: transparent;\n border: 0;\n box-shadow: none;\n > li > a,\n .dropdown-header {\n padding: 5px 15px 5px 25px;\n }\n > li > a {\n line-height: @line-height-computed;\n &:hover,\n &:focus {\n background-image: none;\n }\n }\n }\n }\n\n // Uncollapse the nav\n @media (min-width: @grid-float-breakpoint) {\n float: left;\n margin: 0;\n\n > li {\n float: left;\n > a {\n padding-top: @navbar-padding-vertical;\n padding-bottom: @navbar-padding-vertical;\n }\n }\n }\n}\n\n\n// Navbar form\n//\n// Extension of the `.form-inline` with some extra flavor for optimum display in\n// our navbars.\n\n.navbar-form {\n margin-left: -@navbar-padding-horizontal;\n margin-right: -@navbar-padding-horizontal;\n padding: 10px @navbar-padding-horizontal;\n border-top: 1px solid transparent;\n border-bottom: 1px solid transparent;\n @shadow: inset 0 1px 0 rgba(255,255,255,.1), 0 1px 0 rgba(255,255,255,.1);\n .box-shadow(@shadow);\n\n // Mixin behavior for optimum display\n .form-inline();\n\n .form-group {\n @media (max-width: @grid-float-breakpoint-max) {\n margin-bottom: 5px;\n\n &:last-child {\n margin-bottom: 0;\n }\n }\n }\n\n // Vertically center in expanded, horizontal navbar\n .navbar-vertical-align(@input-height-base);\n\n // Undo 100% width for pull classes\n @media (min-width: @grid-float-breakpoint) {\n width: auto;\n border: 0;\n margin-left: 0;\n margin-right: 0;\n padding-top: 0;\n padding-bottom: 0;\n .box-shadow(none);\n }\n}\n\n\n// Dropdown menus\n\n// Menu position and menu carets\n.navbar-nav > li > .dropdown-menu {\n margin-top: 0;\n .border-top-radius(0);\n}\n// Menu position and menu caret support for dropups via extra dropup class\n.navbar-fixed-bottom .navbar-nav > li > .dropdown-menu {\n margin-bottom: 0;\n .border-top-radius(@navbar-border-radius);\n .border-bottom-radius(0);\n}\n\n\n// Buttons in navbars\n//\n// Vertically center a button within a navbar (when *not* in a form).\n\n.navbar-btn {\n .navbar-vertical-align(@input-height-base);\n\n &.btn-sm {\n .navbar-vertical-align(@input-height-small);\n }\n &.btn-xs {\n .navbar-vertical-align(22);\n }\n}\n\n\n// Text in navbars\n//\n// Add a class to make any element properly align itself vertically within the navbars.\n\n.navbar-text {\n .navbar-vertical-align(@line-height-computed);\n\n @media (min-width: @grid-float-breakpoint) {\n float: left;\n margin-left: @navbar-padding-horizontal;\n margin-right: @navbar-padding-horizontal;\n }\n}\n\n\n// Component alignment\n//\n// Repurpose the pull utilities as their own navbar utilities to avoid specificity\n// issues with parents and chaining. Only do this when the navbar is uncollapsed\n// though so that navbar contents properly stack and align in mobile.\n//\n// Declared after the navbar components to ensure more specificity on the margins.\n\n@media (min-width: @grid-float-breakpoint) {\n .navbar-left { .pull-left(); }\n .navbar-right {\n .pull-right();\n margin-right: -@navbar-padding-horizontal;\n\n ~ .navbar-right {\n margin-right: 0;\n }\n }\n}\n\n\n// Alternate navbars\n// --------------------------------------------------\n\n// Default navbar\n.navbar-default {\n background-color: @navbar-default-bg;\n border-color: @navbar-default-border;\n\n .navbar-brand {\n color: @navbar-default-brand-color;\n &:hover,\n &:focus {\n color: @navbar-default-brand-hover-color;\n background-color: @navbar-default-brand-hover-bg;\n }\n }\n\n .navbar-text {\n color: @navbar-default-color;\n }\n\n .navbar-nav {\n > li > a {\n color: @navbar-default-link-color;\n\n &:hover,\n &:focus {\n color: @navbar-default-link-hover-color;\n background-color: @navbar-default-link-hover-bg;\n }\n }\n > .active > a {\n &,\n &:hover,\n &:focus {\n color: @navbar-default-link-active-color;\n background-color: @navbar-default-link-active-bg;\n }\n }\n > .disabled > a {\n &,\n &:hover,\n &:focus {\n color: @navbar-default-link-disabled-color;\n background-color: @navbar-default-link-disabled-bg;\n }\n }\n }\n\n .navbar-toggle {\n border-color: @navbar-default-toggle-border-color;\n &:hover,\n &:focus {\n background-color: @navbar-default-toggle-hover-bg;\n }\n .icon-bar {\n background-color: @navbar-default-toggle-icon-bar-bg;\n }\n }\n\n .navbar-collapse,\n .navbar-form {\n border-color: @navbar-default-border;\n }\n\n // Dropdown menu items\n .navbar-nav {\n // Remove background color from open dropdown\n > .open > a {\n &,\n &:hover,\n &:focus {\n background-color: @navbar-default-link-active-bg;\n color: @navbar-default-link-active-color;\n }\n }\n\n @media (max-width: @grid-float-breakpoint-max) {\n // Dropdowns get custom display when collapsed\n .open .dropdown-menu {\n > li > a {\n color: @navbar-default-link-color;\n &:hover,\n &:focus {\n color: @navbar-default-link-hover-color;\n background-color: @navbar-default-link-hover-bg;\n }\n }\n > .active > a {\n &,\n &:hover,\n &:focus {\n color: @navbar-default-link-active-color;\n background-color: @navbar-default-link-active-bg;\n }\n }\n > .disabled > a {\n &,\n &:hover,\n &:focus {\n color: @navbar-default-link-disabled-color;\n background-color: @navbar-default-link-disabled-bg;\n }\n }\n }\n }\n }\n\n\n // Links in navbars\n //\n // Add a class to ensure links outside the navbar nav are colored correctly.\n\n .navbar-link {\n color: @navbar-default-link-color;\n &:hover {\n color: @navbar-default-link-hover-color;\n }\n }\n\n .btn-link {\n color: @navbar-default-link-color;\n &:hover,\n &:focus {\n color: @navbar-default-link-hover-color;\n }\n &[disabled],\n fieldset[disabled] & {\n &:hover,\n &:focus {\n color: @navbar-default-link-disabled-color;\n }\n }\n }\n}\n\n// Inverse navbar\n\n.navbar-inverse {\n background-color: @navbar-inverse-bg;\n border-color: @navbar-inverse-border;\n\n .navbar-brand {\n color: @navbar-inverse-brand-color;\n &:hover,\n &:focus {\n color: @navbar-inverse-brand-hover-color;\n background-color: @navbar-inverse-brand-hover-bg;\n }\n }\n\n .navbar-text {\n color: @navbar-inverse-color;\n }\n\n .navbar-nav {\n > li > a {\n color: @navbar-inverse-link-color;\n\n &:hover,\n &:focus {\n color: @navbar-inverse-link-hover-color;\n background-color: @navbar-inverse-link-hover-bg;\n }\n }\n > .active > a {\n &,\n &:hover,\n &:focus {\n color: @navbar-inverse-link-active-color;\n background-color: @navbar-inverse-link-active-bg;\n }\n }\n > .disabled > a {\n &,\n &:hover,\n &:focus {\n color: @navbar-inverse-link-disabled-color;\n background-color: @navbar-inverse-link-disabled-bg;\n }\n }\n }\n\n // Darken the responsive nav toggle\n .navbar-toggle {\n border-color: @navbar-inverse-toggle-border-color;\n &:hover,\n &:focus {\n background-color: @navbar-inverse-toggle-hover-bg;\n }\n .icon-bar {\n background-color: @navbar-inverse-toggle-icon-bar-bg;\n }\n }\n\n .navbar-collapse,\n .navbar-form {\n border-color: darken(@navbar-inverse-bg, 7%);\n }\n\n // Dropdowns\n .navbar-nav {\n > .open > a {\n &,\n &:hover,\n &:focus {\n background-color: @navbar-inverse-link-active-bg;\n color: @navbar-inverse-link-active-color;\n }\n }\n\n @media (max-width: @grid-float-breakpoint-max) {\n // Dropdowns get custom display\n .open .dropdown-menu {\n > .dropdown-header {\n border-color: @navbar-inverse-border;\n }\n .divider {\n background-color: @navbar-inverse-border;\n }\n > li > a {\n color: @navbar-inverse-link-color;\n &:hover,\n &:focus {\n color: @navbar-inverse-link-hover-color;\n background-color: @navbar-inverse-link-hover-bg;\n }\n }\n > .active > a {\n &,\n &:hover,\n &:focus {\n color: @navbar-inverse-link-active-color;\n background-color: @navbar-inverse-link-active-bg;\n }\n }\n > .disabled > a {\n &,\n &:hover,\n &:focus {\n color: @navbar-inverse-link-disabled-color;\n background-color: @navbar-inverse-link-disabled-bg;\n }\n }\n }\n }\n }\n\n .navbar-link {\n color: @navbar-inverse-link-color;\n &:hover {\n color: @navbar-inverse-link-hover-color;\n }\n }\n\n .btn-link {\n color: @navbar-inverse-link-color;\n &:hover,\n &:focus {\n color: @navbar-inverse-link-hover-color;\n }\n &[disabled],\n fieldset[disabled] & {\n &:hover,\n &:focus {\n color: @navbar-inverse-link-disabled-color;\n }\n }\n }\n}\n","// Navbar vertical align\n//\n// Vertically center elements in the navbar.\n// Example: an element has a height of 30px, so write out `.navbar-vertical-align(30px);` to calculate the appropriate top margin.\n\n.navbar-vertical-align(@element-height) {\n margin-top: ((@navbar-height - @element-height) / 2);\n margin-bottom: ((@navbar-height - @element-height) / 2);\n}\n","//\n// Utility classes\n// --------------------------------------------------\n\n\n// Floats\n// -------------------------\n\n.clearfix {\n .clearfix();\n}\n.center-block {\n .center-block();\n}\n.pull-right {\n float: right !important;\n}\n.pull-left {\n float: left !important;\n}\n\n\n// Toggling content\n// -------------------------\n\n// Note: Deprecated .hide in favor of .hidden or .sr-only (as appropriate) in v3.0.1\n.hide {\n display: none !important;\n}\n.show {\n display: block !important;\n}\n.invisible {\n visibility: hidden;\n}\n.text-hide {\n .text-hide();\n}\n\n\n// Hide from screenreaders and browsers\n//\n// Credit: HTML5 Boilerplate\n\n.hidden {\n display: none !important;\n}\n\n\n// For Affix plugin\n// -------------------------\n\n.affix {\n position: fixed;\n}\n","//\n// Breadcrumbs\n// --------------------------------------------------\n\n\n.breadcrumb {\n padding: @breadcrumb-padding-vertical @breadcrumb-padding-horizontal;\n margin-bottom: @line-height-computed;\n list-style: none;\n background-color: @breadcrumb-bg;\n border-radius: @border-radius-base;\n\n > li {\n display: inline-block;\n\n + li:before {\n content: \"@{breadcrumb-separator}\\00a0\"; // Unicode space added since inline-block means non-collapsing white-space\n padding: 0 5px;\n color: @breadcrumb-color;\n }\n }\n\n > .active {\n color: @breadcrumb-active-color;\n }\n}\n","//\n// Pagination (multiple pages)\n// --------------------------------------------------\n.pagination {\n display: inline-block;\n padding-left: 0;\n margin: @line-height-computed 0;\n border-radius: @border-radius-base;\n\n > li {\n display: inline; // Remove list-style and block-level defaults\n > a,\n > span {\n position: relative;\n float: left; // Collapse white-space\n padding: @padding-base-vertical @padding-base-horizontal;\n line-height: @line-height-base;\n text-decoration: none;\n color: @pagination-color;\n background-color: @pagination-bg;\n border: 1px solid @pagination-border;\n margin-left: -1px;\n }\n &:first-child {\n > a,\n > span {\n margin-left: 0;\n .border-left-radius(@border-radius-base);\n }\n }\n &:last-child {\n > a,\n > span {\n .border-right-radius(@border-radius-base);\n }\n }\n }\n\n > li > a,\n > li > span {\n &:hover,\n &:focus {\n z-index: 2;\n color: @pagination-hover-color;\n background-color: @pagination-hover-bg;\n border-color: @pagination-hover-border;\n }\n }\n\n > .active > a,\n > .active > span {\n &,\n &:hover,\n &:focus {\n z-index: 3;\n color: @pagination-active-color;\n background-color: @pagination-active-bg;\n border-color: @pagination-active-border;\n cursor: default;\n }\n }\n\n > .disabled {\n > span,\n > span:hover,\n > span:focus,\n > a,\n > a:hover,\n > a:focus {\n color: @pagination-disabled-color;\n background-color: @pagination-disabled-bg;\n border-color: @pagination-disabled-border;\n cursor: @cursor-disabled;\n }\n }\n}\n\n// Sizing\n// --------------------------------------------------\n\n// Large\n.pagination-lg {\n .pagination-size(@padding-large-vertical; @padding-large-horizontal; @font-size-large; @line-height-large; @border-radius-large);\n}\n\n// Small\n.pagination-sm {\n .pagination-size(@padding-small-vertical; @padding-small-horizontal; @font-size-small; @line-height-small; @border-radius-small);\n}\n","// Pagination\n\n.pagination-size(@padding-vertical; @padding-horizontal; @font-size; @line-height; @border-radius) {\n > li {\n > a,\n > span {\n padding: @padding-vertical @padding-horizontal;\n font-size: @font-size;\n line-height: @line-height;\n }\n &:first-child {\n > a,\n > span {\n .border-left-radius(@border-radius);\n }\n }\n &:last-child {\n > a,\n > span {\n .border-right-radius(@border-radius);\n }\n }\n }\n}\n","//\n// Pager pagination\n// --------------------------------------------------\n\n\n.pager {\n padding-left: 0;\n margin: @line-height-computed 0;\n list-style: none;\n text-align: center;\n &:extend(.clearfix all);\n li {\n display: inline;\n > a,\n > span {\n display: inline-block;\n padding: 5px 14px;\n background-color: @pager-bg;\n border: 1px solid @pager-border;\n border-radius: @pager-border-radius;\n }\n\n > a:hover,\n > a:focus {\n text-decoration: none;\n background-color: @pager-hover-bg;\n }\n }\n\n .next {\n > a,\n > span {\n float: right;\n }\n }\n\n .previous {\n > a,\n > span {\n float: left;\n }\n }\n\n .disabled {\n > a,\n > a:hover,\n > a:focus,\n > span {\n color: @pager-disabled-color;\n background-color: @pager-bg;\n cursor: @cursor-disabled;\n }\n }\n}\n","//\n// Labels\n// --------------------------------------------------\n\n.label {\n display: inline;\n padding: .2em .6em .3em;\n font-size: 75%;\n font-weight: bold;\n line-height: 1;\n color: @label-color;\n text-align: center;\n white-space: nowrap;\n vertical-align: baseline;\n border-radius: .25em;\n\n // Add hover effects, but only for links\n a& {\n &:hover,\n &:focus {\n color: @label-link-hover-color;\n text-decoration: none;\n cursor: pointer;\n }\n }\n\n // Empty labels collapse automatically (not available in IE8)\n &:empty {\n display: none;\n }\n\n // Quick fix for labels in buttons\n .btn & {\n position: relative;\n top: -1px;\n }\n}\n\n// Colors\n// Contextual variations (linked labels get darker on :hover)\n\n.label-default {\n .label-variant(@label-default-bg);\n}\n\n.label-primary {\n .label-variant(@label-primary-bg);\n}\n\n.label-success {\n .label-variant(@label-success-bg);\n}\n\n.label-info {\n .label-variant(@label-info-bg);\n}\n\n.label-warning {\n .label-variant(@label-warning-bg);\n}\n\n.label-danger {\n .label-variant(@label-danger-bg);\n}\n","// Labels\n\n.label-variant(@color) {\n background-color: @color;\n\n &[href] {\n &:hover,\n &:focus {\n background-color: darken(@color, 10%);\n }\n }\n}\n","//\n// Badges\n// --------------------------------------------------\n\n\n// Base class\n.badge {\n display: inline-block;\n min-width: 10px;\n padding: 3px 7px;\n font-size: @font-size-small;\n font-weight: @badge-font-weight;\n color: @badge-color;\n line-height: @badge-line-height;\n vertical-align: middle;\n white-space: nowrap;\n text-align: center;\n background-color: @badge-bg;\n border-radius: @badge-border-radius;\n\n // Empty badges collapse automatically (not available in IE8)\n &:empty {\n display: none;\n }\n\n // Quick fix for badges in buttons\n .btn & {\n position: relative;\n top: -1px;\n }\n\n .btn-xs &,\n .btn-group-xs > .btn & {\n top: 0;\n padding: 1px 5px;\n }\n\n // Hover state, but only for links\n a& {\n &:hover,\n &:focus {\n color: @badge-link-hover-color;\n text-decoration: none;\n cursor: pointer;\n }\n }\n\n // Account for badges in navs\n .list-group-item.active > &,\n .nav-pills > .active > a > & {\n color: @badge-active-color;\n background-color: @badge-active-bg;\n }\n\n .list-group-item > & {\n float: right;\n }\n\n .list-group-item > & + & {\n margin-right: 5px;\n }\n\n .nav-pills > li > a > & {\n margin-left: 3px;\n }\n}\n","//\n// Jumbotron\n// --------------------------------------------------\n\n\n.jumbotron {\n padding-top: @jumbotron-padding;\n padding-bottom: @jumbotron-padding;\n margin-bottom: @jumbotron-padding;\n color: @jumbotron-color;\n background-color: @jumbotron-bg;\n\n h1,\n .h1 {\n color: @jumbotron-heading-color;\n }\n\n p {\n margin-bottom: (@jumbotron-padding / 2);\n font-size: @jumbotron-font-size;\n font-weight: 200;\n }\n\n > hr {\n border-top-color: darken(@jumbotron-bg, 10%);\n }\n\n .container &,\n .container-fluid & {\n border-radius: @border-radius-large; // Only round corners at higher resolutions if contained in a container\n padding-left: (@grid-gutter-width / 2);\n padding-right: (@grid-gutter-width / 2);\n }\n\n .container {\n max-width: 100%;\n }\n\n @media screen and (min-width: @screen-sm-min) {\n padding-top: (@jumbotron-padding * 1.6);\n padding-bottom: (@jumbotron-padding * 1.6);\n\n .container &,\n .container-fluid & {\n padding-left: (@jumbotron-padding * 2);\n padding-right: (@jumbotron-padding * 2);\n }\n\n h1,\n .h1 {\n font-size: @jumbotron-heading-font-size;\n }\n }\n}\n","//\n// Thumbnails\n// --------------------------------------------------\n\n\n// Mixin and adjust the regular image class\n.thumbnail {\n display: block;\n padding: @thumbnail-padding;\n margin-bottom: @line-height-computed;\n line-height: @line-height-base;\n background-color: @thumbnail-bg;\n border: 1px solid @thumbnail-border;\n border-radius: @thumbnail-border-radius;\n .transition(border .2s ease-in-out);\n\n > img,\n a > img {\n &:extend(.img-responsive);\n margin-left: auto;\n margin-right: auto;\n }\n\n // Add a hover state for linked versions only\n a&:hover,\n a&:focus,\n a&.active {\n border-color: @link-color;\n }\n\n // Image captions\n .caption {\n padding: @thumbnail-caption-padding;\n color: @thumbnail-caption-color;\n }\n}\n","//\n// Alerts\n// --------------------------------------------------\n\n\n// Base styles\n// -------------------------\n\n.alert {\n padding: @alert-padding;\n margin-bottom: @line-height-computed;\n border: 1px solid transparent;\n border-radius: @alert-border-radius;\n\n // Headings for larger alerts\n h4 {\n margin-top: 0;\n // Specified for the h4 to prevent conflicts of changing @headings-color\n color: inherit;\n }\n\n // Provide class for links that match alerts\n .alert-link {\n font-weight: @alert-link-font-weight;\n }\n\n // Improve alignment and spacing of inner content\n > p,\n > ul {\n margin-bottom: 0;\n }\n\n > p + p {\n margin-top: 5px;\n }\n}\n\n// Dismissible alerts\n//\n// Expand the right padding and account for the close button's positioning.\n\n.alert-dismissable, // The misspelled .alert-dismissable was deprecated in 3.2.0.\n.alert-dismissible {\n padding-right: (@alert-padding + 20);\n\n // Adjust close link position\n .close {\n position: relative;\n top: -2px;\n right: -21px;\n color: inherit;\n }\n}\n\n// Alternate styles\n//\n// Generate contextual modifier classes for colorizing the alert.\n\n.alert-success {\n .alert-variant(@alert-success-bg; @alert-success-border; @alert-success-text);\n}\n\n.alert-info {\n .alert-variant(@alert-info-bg; @alert-info-border; @alert-info-text);\n}\n\n.alert-warning {\n .alert-variant(@alert-warning-bg; @alert-warning-border; @alert-warning-text);\n}\n\n.alert-danger {\n .alert-variant(@alert-danger-bg; @alert-danger-border; @alert-danger-text);\n}\n","// Alerts\n\n.alert-variant(@background; @border; @text-color) {\n background-color: @background;\n border-color: @border;\n color: @text-color;\n\n hr {\n border-top-color: darken(@border, 5%);\n }\n .alert-link {\n color: darken(@text-color, 10%);\n }\n}\n","//\n// Progress bars\n// --------------------------------------------------\n\n\n// Bar animations\n// -------------------------\n\n// WebKit\n@-webkit-keyframes progress-bar-stripes {\n from { background-position: 40px 0; }\n to { background-position: 0 0; }\n}\n\n// Spec and IE10+\n@keyframes progress-bar-stripes {\n from { background-position: 40px 0; }\n to { background-position: 0 0; }\n}\n\n\n// Bar itself\n// -------------------------\n\n// Outer container\n.progress {\n overflow: hidden;\n height: @line-height-computed;\n margin-bottom: @line-height-computed;\n background-color: @progress-bg;\n border-radius: @progress-border-radius;\n .box-shadow(inset 0 1px 2px rgba(0,0,0,.1));\n}\n\n// Bar of progress\n.progress-bar {\n float: left;\n width: 0%;\n height: 100%;\n font-size: @font-size-small;\n line-height: @line-height-computed;\n color: @progress-bar-color;\n text-align: center;\n background-color: @progress-bar-bg;\n .box-shadow(inset 0 -1px 0 rgba(0,0,0,.15));\n .transition(width .6s ease);\n}\n\n// Striped bars\n//\n// `.progress-striped .progress-bar` is deprecated as of v3.2.0 in favor of the\n// `.progress-bar-striped` class, which you just add to an existing\n// `.progress-bar`.\n.progress-striped .progress-bar,\n.progress-bar-striped {\n #gradient > .striped();\n background-size: 40px 40px;\n}\n\n// Call animation for the active one\n//\n// `.progress.active .progress-bar` is deprecated as of v3.2.0 in favor of the\n// `.progress-bar.active` approach.\n.progress.active .progress-bar,\n.progress-bar.active {\n .animation(progress-bar-stripes 2s linear infinite);\n}\n\n\n// Variations\n// -------------------------\n\n.progress-bar-success {\n .progress-bar-variant(@progress-bar-success-bg);\n}\n\n.progress-bar-info {\n .progress-bar-variant(@progress-bar-info-bg);\n}\n\n.progress-bar-warning {\n .progress-bar-variant(@progress-bar-warning-bg);\n}\n\n.progress-bar-danger {\n .progress-bar-variant(@progress-bar-danger-bg);\n}\n","// Gradients\n\n#gradient {\n\n // Horizontal gradient, from left to right\n //\n // Creates two color stops, start and end, by specifying a color and position for each color stop.\n // Color stops are not available in IE9 and below.\n .horizontal(@start-color: #555; @end-color: #333; @start-percent: 0%; @end-percent: 100%) {\n background-image: -webkit-linear-gradient(left, @start-color @start-percent, @end-color @end-percent); // Safari 5.1-6, Chrome 10+\n background-image: -o-linear-gradient(left, @start-color @start-percent, @end-color @end-percent); // Opera 12\n background-image: linear-gradient(to right, @start-color @start-percent, @end-color @end-percent); // Standard, IE10, Firefox 16+, Opera 12.10+, Safari 7+, Chrome 26+\n background-repeat: repeat-x;\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(startColorstr='%d', endColorstr='%d', GradientType=1)\",argb(@start-color),argb(@end-color))); // IE9 and down\n }\n\n // Vertical gradient, from top to bottom\n //\n // Creates two color stops, start and end, by specifying a color and position for each color stop.\n // Color stops are not available in IE9 and below.\n .vertical(@start-color: #555; @end-color: #333; @start-percent: 0%; @end-percent: 100%) {\n background-image: -webkit-linear-gradient(top, @start-color @start-percent, @end-color @end-percent); // Safari 5.1-6, Chrome 10+\n background-image: -o-linear-gradient(top, @start-color @start-percent, @end-color @end-percent); // Opera 12\n background-image: linear-gradient(to bottom, @start-color @start-percent, @end-color @end-percent); // Standard, IE10, Firefox 16+, Opera 12.10+, Safari 7+, Chrome 26+\n background-repeat: repeat-x;\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(startColorstr='%d', endColorstr='%d', GradientType=0)\",argb(@start-color),argb(@end-color))); // IE9 and down\n }\n\n .directional(@start-color: #555; @end-color: #333; @deg: 45deg) {\n background-repeat: repeat-x;\n background-image: -webkit-linear-gradient(@deg, @start-color, @end-color); // Safari 5.1-6, Chrome 10+\n background-image: -o-linear-gradient(@deg, @start-color, @end-color); // Opera 12\n background-image: linear-gradient(@deg, @start-color, @end-color); // Standard, IE10, Firefox 16+, Opera 12.10+, Safari 7+, Chrome 26+\n }\n .horizontal-three-colors(@start-color: #00b3ee; @mid-color: #7a43b6; @color-stop: 50%; @end-color: #c3325f) {\n background-image: -webkit-linear-gradient(left, @start-color, @mid-color @color-stop, @end-color);\n background-image: -o-linear-gradient(left, @start-color, @mid-color @color-stop, @end-color);\n background-image: linear-gradient(to right, @start-color, @mid-color @color-stop, @end-color);\n background-repeat: no-repeat;\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(startColorstr='%d', endColorstr='%d', GradientType=1)\",argb(@start-color),argb(@end-color))); // IE9 and down, gets no color-stop at all for proper fallback\n }\n .vertical-three-colors(@start-color: #00b3ee; @mid-color: #7a43b6; @color-stop: 50%; @end-color: #c3325f) {\n background-image: -webkit-linear-gradient(@start-color, @mid-color @color-stop, @end-color);\n background-image: -o-linear-gradient(@start-color, @mid-color @color-stop, @end-color);\n background-image: linear-gradient(@start-color, @mid-color @color-stop, @end-color);\n background-repeat: no-repeat;\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(startColorstr='%d', endColorstr='%d', GradientType=0)\",argb(@start-color),argb(@end-color))); // IE9 and down, gets no color-stop at all for proper fallback\n }\n .radial(@inner-color: #555; @outer-color: #333) {\n background-image: -webkit-radial-gradient(circle, @inner-color, @outer-color);\n background-image: radial-gradient(circle, @inner-color, @outer-color);\n background-repeat: no-repeat;\n }\n .striped(@color: rgba(255,255,255,.15); @angle: 45deg) {\n background-image: -webkit-linear-gradient(@angle, @color 25%, transparent 25%, transparent 50%, @color 50%, @color 75%, transparent 75%, transparent);\n background-image: -o-linear-gradient(@angle, @color 25%, transparent 25%, transparent 50%, @color 50%, @color 75%, transparent 75%, transparent);\n background-image: linear-gradient(@angle, @color 25%, transparent 25%, transparent 50%, @color 50%, @color 75%, transparent 75%, transparent);\n }\n}\n","// Progress bars\n\n.progress-bar-variant(@color) {\n background-color: @color;\n\n // Deprecated parent class requirement as of v3.2.0\n .progress-striped & {\n #gradient > .striped();\n }\n}\n",".media {\n // Proper spacing between instances of .media\n margin-top: 15px;\n\n &:first-child {\n margin-top: 0;\n }\n}\n\n.media,\n.media-body {\n zoom: 1;\n overflow: hidden;\n}\n\n.media-body {\n width: 10000px;\n}\n\n.media-object {\n display: block;\n\n // Fix collapse in webkit from max-width: 100% and display: table-cell.\n &.img-thumbnail {\n max-width: none;\n }\n}\n\n.media-right,\n.media > .pull-right {\n padding-left: 10px;\n}\n\n.media-left,\n.media > .pull-left {\n padding-right: 10px;\n}\n\n.media-left,\n.media-right,\n.media-body {\n display: table-cell;\n vertical-align: top;\n}\n\n.media-middle {\n vertical-align: middle;\n}\n\n.media-bottom {\n vertical-align: bottom;\n}\n\n// Reset margins on headings for tighter default spacing\n.media-heading {\n margin-top: 0;\n margin-bottom: 5px;\n}\n\n// Media list variation\n//\n// Undo default ul/ol styles\n.media-list {\n padding-left: 0;\n list-style: none;\n}\n","//\n// List groups\n// --------------------------------------------------\n\n\n// Base class\n//\n// Easily usable on