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RaxmlGUI2

A desktop GUI for RAxML.

Development

This is a an Electron App that was bootstrapped with Create React App.

yarn start will start the Electron app and the React app at the same time.
yarn build will build the React app and package it along the Electron app.

Input formats

RaxmlGUI supports both FASTA and PHYLIP format.

The strict phylip format reserves the first ten characters before each sequence for the name. The relaxed format allows longer name but requires no space within the name to know where it ends.

Examples

Phylip interleaved strict

 5 42 Turkey AAGCTNGGGC ATTTCAGGGT Salmo gairAAGCCTTGGC AGTGCAGGGT H. SapiensACCGGTTGGC CGTTCAGGGT Chimp AAACCCTTGC CGTTACGCTT Gorilla AAACCCTTGC CGGTACGCTT GAGCCCGGGC AATACAGGGT AT GAGCCGTGGC CGGGCACGGT AT ACAGGTTGGC CGTTCAGGGT AA AAACCGAGGC CGGGACACTC AT AAACCATTGC CGGTACGCTT AA 

Phylip interleaved relaxed

 5 42 Turkey AAGCTNGGGC ATTTCAGGGT Salmo_gair AAGCCTTGGC AGTGCAGGGT H._Sapiens ACCGGTTGGC CGTTCAGGGT Chimp AAACCCTTGC CGTTACGCTT Gorilla AAACCCTTGC CGGTACGCTT GAGCCCGGGC AATACAGGGT AT GAGCCGTGGC CGGGCACGGT AT ACAGGTTGGC CGTTCAGGGT AA AAACCGAGGC CGGGACACTC AT AAACCATTGC CGGTACGCTT AA 

Phylip sequential strict

 5 42 Turkey AAGCTNGGGC ATTTCAGGGT GAGCCCGGGC AATACAGGGT AT Salmo gairAAGCCTTGGC AGTGCAGGGT GAGCCGTGGC CGGGCACGGT AT H. SapiensACCGGTTGGC CGTTCAGGGT ACAGGTTGGC CGTTCAGGGT AA Chimp AAACCCTTGC CGTTACGCTT AAACCGAGGC CGGGACACTC AT Gorilla AAACCCTTGC CGGTACGCTT AAACCATTGC CGGTACGCTT AA 

Phylip sequential relaxed

 5 42 Turkey AAGCTNGGGC ATTTCAGGGT GAGCCCGGGC AATACAGGGT AT Salmo_gair AAGCCTTGGC AGTGCAGGGT GAGCCGTGGC CGGGCACGGT AT H._Sapiens ACCGGTTGGC CGTTCAGGGT ACAGGTTGGC CGTTCAGGGT AA Chimp AAACCCTTGC CGTTACGCTT AAACCGAGGC CGGGACACTC AT Gorilla AAACCCTTGC CGGTACGCTT AAACCATTGC CGGTACGCTT AA 

MacOS code-signing and notarizing

https://medium.com/@TwitterArchiveEraser/notarize-electron-apps-7a5f988406dbhttps://github.com/electron/electron-notarizehttps://stackoverflow.com/questions/53112078/how-to-upload-dmg-file-for-notarization-in-xcode/53121755#53121755

Publishing with electron-builder

Need to have a GH_TOKEN in your shell env

Binaries

The binaries for RAxML on MacOS were compiled from this repository: https://github.com/jtklein/standard-RAxML

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A new graphical interface for RAxML

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