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Data links in alphafolddb.py are outdated.
From https://ftp.ebi.ac.uk/pub/databases/alphafold/, latest AlphaFold is v3. Some data, e.g., UP000006548_3702_ARATH_v2.tar does not exist in v3.

Just change the xxx/latest/xxx to xxx/v2/xxx in the links.

Moreover, the md5sum values are not right. I just double-checked and modified the md5sum of UP000006548_3702_ARATH_v2.tar. Other md5sum values might also need to be updated.

Data links in `alphafolddb.py` are outdated. From https://ftp.ebi.ac.uk/pub/databases/alphafold/, latest AlphaFold is **v3**. Some data, e.g., `UP000006548_3702_ARATH_v2.tar` does not exist in v3. Just change the `xxx/latest/xxx` to `xxx/v2/xxx` in the links. Moreover, the md5sum values are not right. I just double-checked and modified the md5sum of `UP000006548_3702_ARATH_v2.tar`. Other md5sum values might also need to be updated.
@Oxer11Oxer11 merged commit 02fb1e8 into DeepGraphLearning:masterSep 30, 2022
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@ShoufaChen@Oxer11