Setup CLI

[tieneupin]

Adds a command line tool intended to walk non-developers through the process of setting up a configuration file in order to run Murfey properly.

Key Changes:

• The Security class has been renamed to GlobalConfig, and functions referring to it have likewise been renamed.
  • Murfey will likewise now look for the MURFEY_GLOBAL_CONFIGURATION environment variable instead of MURFEY_SECURITY_CONFIGURATION.
• Many MachineConfig keys have been re-typed to take Optional[Path] instead of str as part of making more parts of the Murfey workflow optional for other users. The code parsing logic has been changed to reflect this.

[codecov]

Codecov Report

Attention: Patch coverage is 15.14286% with 594 lines in your changes missing coverage. Please review.

Project coverage is 25.79%. Comparing base (1c5667d) to head (1b117d3).

Additional details and impacted files

@@ Coverage Diff @@## main #401 +/- ## ========================================== - Coverage 27.05% 25.79% -1.26%  ========================================== Files 75 76 +1 Lines 10180 10765 +585 Branches 1343 1447 +104 ========================================== + Hits 2754 2777 +23 - Misses 7336 7891 +555 - Partials 90 97 +7 

[tieneupin]

As of the time of this writing, the following discussed changes have been implemented:

• If a section is disabled then the rest of the keys for the section can be skipped
• The recipe keys can be a literal
• Can we have (y/n) in a different colour to make it clear you should answer with a yes or no?
• If nothing is added to something with a default can we give the option to choose to use the default?
• Could we leave (press Enter to leave it blank as '') out for non-strings

The following changes are still needed:

• In the tests the environment variables need setting back to MURFEY_SECURITY_CONFIGURATION