Implemented KD Tree Data Structure#11532

Ramy-Badr-Ahmed · 2024-08-28T11:29:03Z

Describe your change:

This pull request adds an implementation of the KD-Tree data structure along with related functionalities, such as nearest neighbor searches.

Definition: The KD-Tree is a space-partitioning data structure used for organizing points in a k-dimensional space. (URL: KD-Tree)

Implementation Details:

build_kdtree.py: Contains the function to build a KD-Tree from a set of points.
nearest_neighbor_search.py: Implements the nearest neighbor search algorithm using the built KD-Tree.
kd_node.py: Defines the KDNode class representing nodes in the KD-Tree.

Example Usage:

hypercube_points.py: Provides a function to generate random points uniformly distributed within an n-dimensional hypercube.
example_usage.py: Demonstrates how to use the KD-Tree implementation with the generated random hypercube points and querying for nearest neighbors.

Unit Tests:

test_kdtree.py: Validates the correctness of the KD Tree implementation, including tests for building the tree, querying for nearest neighbors and testing edge cases.

Reference

The Algorithm Design Manual, Latest edition

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…d_tree/example_usage.py

…d_tree/hypercube_points.py

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data_structures/kd_tree/build_kdtree.py

data_structures/kd_tree/example/hypercube_points.py

data_structures/kd_tree/kd_node.py

data_structures/kd_tree/nearest_neighbour_search.py

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data_structures/kd_tree/build_kdtree.py

data_structures/kd_tree/example/example_usage.py

data_structures/kd_tree/example/hypercube_points.py

data_structures/kd_tree/nearest_neighbour_search.py

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…into feature/kd-tree-implementation # Conflicts: # data_structures/kd_tree/nearest_neighbour_search.py

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data_structures/kd_tree/build_kdtree.py

data_structures/kd_tree/example/example_usage.py

data_structures/kd_tree/example/hypercube_points.py

data_structures/kd_tree/nearest_neighbour_search.py

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Ramy-Badr-Ahmed

Added docstrings, & typehints

Ramy-Badr-Ahmed

added pytests, changed assertion style

data_structures/kd_tree/tests/test_kdtree.py

data_structures/kd_tree/build_kdtree.py

data_structures/kd_tree/kd_node.py

data_structures/kd_tree/nearest_neighbour_search.py

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cclauss · 2024-09-03T11:59:13Z

I made some changes... Let's see if it passes.

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Ramy-Badr-Ahmed · 2024-09-03T12:34:58Z

I made some changes... Let's see if it passes.

Works now :-)

cclauss

Nice... Nodes are usually great candidates for dataclass.

Thanks for doing this.

Added some comments to my files in TheAlgorithms#11532, TheAlgorithms#11554.

* Implemented KD-Tree Data Structure * Implemented KD-Tree Data Structure. updated DIRECTORY.md. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Create __init__.py * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Replaced legacy `np.random.rand` call with `np.random.Generator` in kd_tree/example_usage.py * Replaced legacy `np.random.rand` call with `np.random.Generator` in kd_tree/hypercube_points.py * added typehints and docstrings * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * docstring for search() * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Added tests. Updated docstrings/typehints * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * updated tests and used | for type annotations * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * E501 for build_kdtree.py, hypercube_points.py, nearest_neighbour_search.py * I001 for example_usage.py and test_kdtree.py * I001 for example_usage.py and test_kdtree.py * Update data_structures/kd_tree/build_kdtree.py Co-authored-by: Christian Clauss <[email protected]> * Update data_structures/kd_tree/example/hypercube_points.py Co-authored-by: Christian Clauss <[email protected]> * Update data_structures/kd_tree/example/hypercube_points.py Co-authored-by: Christian Clauss <[email protected]> * Added new test cases requested in Review. Refactored the test_build_kdtree() to include various checks. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considered ruff errors * Considered ruff errors * Apply suggestions from code review * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update kd_node.py * imported annotations from __future__ * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Implementation of the suffix tree data structure * Adding data to DIRECTORY.md * Minor file renaming * minor correction * renaming in DIRECTORY.md * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considering ruff part-1 * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considering ruff part-2 * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considering ruff part-3 * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considering ruff part-4 * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considering ruff part-5 * Implemented Suffix Tree Data Structure. Added some comments to my files in #11532, #11554. * updating DIRECTORY.md * Implemented Suffix Tree Data Structure. Added some comments to my files in #11532, #11554. --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Christian Clauss <[email protected]> Co-authored-by: Ramy-Badr-Ahmed <[email protected]>

* Implemented KD-Tree Data Structure * Implemented KD-Tree Data Structure. updated DIRECTORY.md. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Create __init__.py * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Replaced legacy `np.random.rand` call with `np.random.Generator` in kd_tree/example_usage.py * Replaced legacy `np.random.rand` call with `np.random.Generator` in kd_tree/hypercube_points.py * added typehints and docstrings * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * docstring for search() * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Added tests. Updated docstrings/typehints * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * updated tests and used | for type annotations * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * E501 for build_kdtree.py, hypercube_points.py, nearest_neighbour_search.py * I001 for example_usage.py and test_kdtree.py * I001 for example_usage.py and test_kdtree.py * Update data_structures/kd_tree/build_kdtree.py Co-authored-by: Christian Clauss <[email protected]> * Update data_structures/kd_tree/example/hypercube_points.py Co-authored-by: Christian Clauss <[email protected]> * Update data_structures/kd_tree/example/hypercube_points.py Co-authored-by: Christian Clauss <[email protected]> * Added new test cases requested in Review. Refactored the test_build_kdtree() to include various checks. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considered ruff errors * Considered ruff errors * Apply suggestions from code review * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update kd_node.py * imported annotations from __future__ * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Christian Clauss <[email protected]>

* Implemented KD-Tree Data Structure * Implemented KD-Tree Data Structure. updated DIRECTORY.md. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Create __init__.py * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Replaced legacy `np.random.rand` call with `np.random.Generator` in kd_tree/example_usage.py * Replaced legacy `np.random.rand` call with `np.random.Generator` in kd_tree/hypercube_points.py * added typehints and docstrings * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * docstring for search() * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Added tests. Updated docstrings/typehints * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * updated tests and used | for type annotations * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * E501 for build_kdtree.py, hypercube_points.py, nearest_neighbour_search.py * I001 for example_usage.py and test_kdtree.py * I001 for example_usage.py and test_kdtree.py * Update data_structures/kd_tree/build_kdtree.py Co-authored-by: Christian Clauss <[email protected]> * Update data_structures/kd_tree/example/hypercube_points.py Co-authored-by: Christian Clauss <[email protected]> * Update data_structures/kd_tree/example/hypercube_points.py Co-authored-by: Christian Clauss <[email protected]> * Added new test cases requested in Review. Refactored the test_build_kdtree() to include various checks. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considered ruff errors * Considered ruff errors * Apply suggestions from code review * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update kd_node.py * imported annotations from __future__ * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Implementation of the suffix tree data structure * Adding data to DIRECTORY.md * Minor file renaming * minor correction * renaming in DIRECTORY.md * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considering ruff part-1 * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considering ruff part-2 * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considering ruff part-3 * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considering ruff part-4 * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considering ruff part-5 * Implemented Suffix Tree Data Structure. Added some comments to my files in TheAlgorithms#11532, TheAlgorithms#11554. * updating DIRECTORY.md * Implemented Suffix Tree Data Structure. Added some comments to my files in TheAlgorithms#11532, TheAlgorithms#11554. --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Christian Clauss <[email protected]> Co-authored-by: Ramy-Badr-Ahmed <[email protected]>

* Implemented KD-Tree Data Structure * Implemented KD-Tree Data Structure. updated DIRECTORY.md. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Create __init__.py * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Replaced legacy `np.random.rand` call with `np.random.Generator` in kd_tree/example_usage.py * Replaced legacy `np.random.rand` call with `np.random.Generator` in kd_tree/hypercube_points.py * added typehints and docstrings * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * docstring for search() * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Added tests. Updated docstrings/typehints * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * updated tests and used | for type annotations * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * E501 for build_kdtree.py, hypercube_points.py, nearest_neighbour_search.py * I001 for example_usage.py and test_kdtree.py * I001 for example_usage.py and test_kdtree.py * Update data_structures/kd_tree/build_kdtree.py Co-authored-by: Christian Clauss <[email protected]> * Update data_structures/kd_tree/example/hypercube_points.py Co-authored-by: Christian Clauss <[email protected]> * Update data_structures/kd_tree/example/hypercube_points.py Co-authored-by: Christian Clauss <[email protected]> * Added new test cases requested in Review. Refactored the test_build_kdtree() to include various checks. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considered ruff errors * Considered ruff errors * Apply suggestions from code review * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update kd_node.py * imported annotations from __future__ * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Christian Clauss <[email protected]>

* Implemented KD-Tree Data Structure * Implemented KD-Tree Data Structure. updated DIRECTORY.md. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Create __init__.py * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Replaced legacy `np.random.rand` call with `np.random.Generator` in kd_tree/example_usage.py * Replaced legacy `np.random.rand` call with `np.random.Generator` in kd_tree/hypercube_points.py * added typehints and docstrings * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * docstring for search() * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Added tests. Updated docstrings/typehints * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * updated tests and used | for type annotations * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * E501 for build_kdtree.py, hypercube_points.py, nearest_neighbour_search.py * I001 for example_usage.py and test_kdtree.py * I001 for example_usage.py and test_kdtree.py * Update data_structures/kd_tree/build_kdtree.py Co-authored-by: Christian Clauss <[email protected]> * Update data_structures/kd_tree/example/hypercube_points.py Co-authored-by: Christian Clauss <[email protected]> * Update data_structures/kd_tree/example/hypercube_points.py Co-authored-by: Christian Clauss <[email protected]> * Added new test cases requested in Review. Refactored the test_build_kdtree() to include various checks. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considered ruff errors * Considered ruff errors * Apply suggestions from code review * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update kd_node.py * imported annotations from __future__ * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Implementation of the suffix tree data structure * Adding data to DIRECTORY.md * Minor file renaming * minor correction * renaming in DIRECTORY.md * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considering ruff part-1 * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considering ruff part-2 * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considering ruff part-3 * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considering ruff part-4 * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considering ruff part-5 * Implemented Suffix Tree Data Structure. Added some comments to my files in TheAlgorithms#11532, TheAlgorithms#11554. * updating DIRECTORY.md * Implemented Suffix Tree Data Structure. Added some comments to my files in TheAlgorithms#11532, TheAlgorithms#11554. --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Christian Clauss <[email protected]> Co-authored-by: Ramy-Badr-Ahmed <[email protected]>

Ramy-Badr-Ahmedand others added 3 commits August 28, 2024 13:09

Implemented KD-Tree Data Structure
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Implemented KD-Tree Data Structure. updated DIRECTORY.md.
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Ramy-Badr-Ahmed changed the title ~~Feature/kd tree implementation~~kd tree data structure implementationAug 28, 2024

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Ramy-Badr-Ahmed added 2 commits August 28, 2024 19:39

Replaced legacy np.random.rand call with np.random.Generator in k…
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Replaced legacy np.random.rand call with np.random.Generator in k…
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…d_tree/hypercube_points.py

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Ramy-Badr-Ahmed changed the title ~~kd tree data structure implementation~~KD Tree Data Structure ImplementationSep 21, 2024

Ramy-Badr-Ahmed mentioned this pull request Sep 26, 2024
Bhavesh9908/Building a KD-Tree from Points #11547
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Ramy-Badr-Ahmed changed the title ~~KD Tree Data Structure Implementation~~Implemented KD Tree Data StructureSep 26, 2024

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Implemented Suffix Tree Data Structure.
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Implemented Suffix Tree Data Structure.
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Added some comments to my files in TheAlgorithms#11532, TheAlgorithms#11554.

isidroas mentioned this pull request Jan 25, 2025
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