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@dib-lab@ngs-docs@EarthMicrobiomeProject@beacon-center@everpub@spacegraphcats@osfclient@speeding-up-science-workshops@ucdavisdatalab

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  1. sourmash-bio/sourmashsourmash-bio/sourmashPublic

    Quickly search, compare, and analyze genomic and metagenomic data sets.

    Python 536 88

  2. spacegraphcats/spacegraphcatsspacegraphcats/spacegraphcatsPublic

    Indexing & querying large assembly graphs -- in space, no one can hear you miao!

    Standard ML 118 15

  3. dib-lab/charcoaldib-lab/charcoalPublic

    Remove contaminated contigs from genomes using k-mers and taxonomies.

    Python 59 2

  4. dib-lab/genome-gristdib-lab/genome-gristPublic

    map Illumina metagenomes to genomes!

    Jupyter Notebook 38 6