refactor: New cli for labpdfproc

[cadenmyers13]

closes#204

please see this closed PR for information on whats changed in this PR: #207. This PR was duplicated because of merge conflicts

[cadenmyers13]

@sbillinge ready for review/merge. I created a new PR to clean the commit history and I also was struggling with the merge conflict for some reason.

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 99.37%. Comparing base (f1e9b63) to head (f1d3930).
⚠️ Report is 8 commits behind head on main.

Additional details and impacted files

@@ Coverage Diff @@## main #208 +/- ## ========================================== + Coverage 99.31% 99.37% +0.06%  ========================================== Files 5 5 Lines 292 322 +30 ========================================== + Hits 290 320 +30  Misses 2 2 

Files with missing lines	Coverage Δ
tests/test_tools.py	99.01% <100.00%> (+0.17%)	⬆️

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[cadenmyers13]

@sbillinge can we get this merged?