Skip to content
View huruifeng's full-sized avatar

Block or report huruifeng

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don't include any personal information such as legal names or email addresses. Markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
huruifeng/README.md

Hi there 👋, I am Ruifeng Hu.

🤗 Welcome to my GitHub.

Hi there! I'm Ruifeng Hu, Ph.D., a computational biologist specializing in bioinformatics, machine learning, and multi-omics data analysis. Currently, I work as a Research Scientist at Yale School of Medicine, applying advanced statistical and AI-driven approaches to decipher complex biological data for biomarker discovery, precision medicine, and disease modeling.

I have rich experience in:

  • Multi-omics Data Analysis: Single-cell & bulk RNA-seq, spatial transcriptomics, CRISPR screens, genetics.
  • Machine Learning & Deep Learning: Regression, clustering, generative models (VAE, LSTM, Transformer).
  • Cloud & HPC Computing: Nextflow, Airflow, Docker, AWS, GCP, high-performance computing.
  • Bioinformatics Pipelines & Web Development: Automated workflows and interactive genomic data platforms.

I actively contribute to open-source projects and have developed various bioinformatics tools and databases. My research focuses on leveraging AI and data-driven methods to advance biomedical discoveries.

I thrive in collaborative environments, working closely with wet lab scientists and other researchers to bridge the gap between computational and experimental biology. Always exploring cutting-edge AI applications in bioinformatics!

Let's connect and explore new possibilities in AI-driven bioinformatics! 🔬🤖✨

🧰 Programming

My Skills

🧰 Developing

My Skills

Popular repositories Loading

  1. lncRNATarget_local lncRNATarget_localPublic

    lncRNATargets: A platform for lncRNA target prediction based on nucleic acid thermodynamics.

    Python 5 2

  2. CP_Assembler CP_AssemblerPublic

    A piprline for chloroplast genome assembly

    Python 1

  3. CREAT CREATPublic

    Chloroplast Reads Enrichment and Assembly Toolkits

    Python 1

  4. awesome-deepbio awesome-deepbioPublic

    Forked from gokceneraslan/awesome-deepbio

    A curated list of awesome deep learning applications in the field of computational biology

    1

  5. LSCplus LSCplusPublic

    A fast solution for improving long reads accuracy by short read alignment

    Perl 1

  6. huruifeng.github.io huruifeng.github.ioPublic

    Ruifeng Hu

    CSS