tools for analysis and comparison of cell painting data

A hierarchical variational autoencoder based method for semantic segmentation of Electron Microscopy data.

Range Invariant SSIM

A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier

This repository hosts the code for HDN (associated with the paper https://arxiv.org/pdf/2104.01374.pdf) for pixel and structured noise removal for microscopy and natural image datasets

Cell Simulator to map parametrical distributions into various modalities

Tools to quantify and compare tiling artifacts in model predictions. Our framework measures and visualizes these differences, making it easier to compare artifact severity across different models or inference strategies.