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  1. MEP-AutoHetDetMEP-AutoHetDetPublic

    Code associated with publication on MEP and temporal strategies

    Fortran

  2. hyperBOBhyperBOBPublic

    Optimization using MPI parallel Latin hypercube sampling and BOBYQA

    Fortran

  3. MEP-ATBMEP-ATBPublic

    Code developed as part of the NSF Advancing Theory in Biology project. See website.

    Fortran

  4. MEP-SidersPondMEP-SidersPondPublic

    Fortran code used for MEP model to describe microbial biogeochemistry in Siders Pond, MA

    Fortran 1 2

  5. Trait-Based-ChemostatTrait-Based-ChemostatPublic

    Mathematica model for a trait-based model of bacterial growth in a chemostat. This model supports the manuscript "Growth characteristics of natural microbial populations are skewed towards bacteria…

    Mathematica 1

  6. MEP-ChemostatMEP-ChemostatPublic

    This model is being develop as part of the NSF funded project: Investigating the connectivity of microbial food webs using thermodynamic models, stable isotope probing and genomics (Award #1655552)…

    Fortran