src: refactor bookkeeping of bootstrap status#37113
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This patch
when --no-node-snapshot is used,
Environment::InitializeMainContext() will only be called once
(previously it would be called twice, which was harmless for now
but not ideal).
the Environment from scratch and in InitializeMainContext() when
the Environment is deserialized. Previously the marking was done in
the Environment constructor and InitializeMainContext() respectively
for the cctest which was incorrect because the cctest never uses
an Environment that's not bootstrapped. Also renames the mark
to base_object_created_after_bootstrap to reflect what it's
intended for.
Refs: #36943
Refs: #35711