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@open2c

Open Chromosome Collective

README.md

Welcome to Open2C!

Open2C is a community that develops and maintains open-source tools for 3D chromosome biology and genomic data science, primarily in Python.

Here's how to get started:

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  1. coolercoolerPublic

    A cool place to store your Hi-C

    Python 230 58

  2. cooltoolscooltoolsPublic

    The tools for your .cool's

    Jupyter Notebook 157 54

  3. pairtoolspairtoolsPublic

    Extract 3D contacts (.pairs) from sequencing alignments

    Python 120 36

  4. bioframebioframePublic

    Genomic interval operations on Pandas DataFrames

    Python 184 35

  5. distiller-nfdistiller-nfPublic

    A modular Hi-C mapping pipeline

    Groovy 100 27

  6. polychrompolychromPublic

    Chromosome polymer simulations and in silico capture experiments

    Python 52 17

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