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    25 repositories

    • soda-mmQC

      Public
      multi modal Quality checks
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 9, 2026Jan 9, 2026

    • soda-curation

      Public
      SODA Curation is a Streamlit application that provides a simple interface for uploading and processing ZIP files. It's designed to run in a Docker container with NVIDIA GPU support.
      Python
      •0•1•0•2•Updated Dec 11, 2025Dec 11, 2025

    • soda_image_segmentation

      Public
      Multimodal model to separate figure captions and their legends into their constituent panels
      Python
      •0•0•0•0•Updated Dec 11, 2025Dec 11, 2025

    • soda-model

      Public
      Python
      •
      MIT License
      •0•2•0•0•Updated Dec 11, 2025Dec 11, 2025

    • soda-data

      Public
      The Source Data dataset: a biological annotated dataset for machine learning and AI in the publishing context.
      Python
      •
      MIT License
      •0•3•1•0•Updated Dec 11, 2025Dec 11, 2025

    • vecalex

      Public
      OpenAlex + vectors = :)
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 26, 2025Nov 26, 2025

    • mecadoi

      Public
      Creating DOIs for peer reviews in MECA archives.
      Jupyter Notebook
      •
      MIT License
      •0•3•0•0•Updated Nov 20, 2025Nov 20, 2025

    • sd-graph

      Public
      Scripts to build the sd-graph database from the SourceData project
      Python
      •
      GNU Affero General Public License v3.0
      •2•9•2•2•Updated Sep 4, 2025Sep 4, 2025

    • stylometric

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 19, 2025Aug 19, 2025

    • soda-roberta

      Public
      SODA-RoBERTa is a Source Data resource for training RoBERTa transformers for natural language processing tasks in cell and molecular biology.
      Jupyter Notebook
      •
      MIT License
      •1•5•1•0•Updated Jul 2, 2025Jul 2, 2025

    • oidc-mock-server

      Public
      A mock server providing OpenID Connect (OIDC) flows for local development and testing. DO NOT USE IN PRODUCTION!
      JavaScript
      •
      MIT License
      •16•0•0•0•Updated Mar 25, 2025Mar 25, 2025

    • render-rev

      Public
      Visualizing the peer review process.
      JavaScript
      •
      MIT License
      •1•4•1•0•Updated Feb 16, 2024Feb 16, 2024

    • smart-figures

      Public
      Code for the SmartFigures viewer of the SourceData project
      JavaScript
      •
      GNU Affero General Public License v3.0
      •1•2•1•4•Updated Aug 7, 2023Aug 7, 2023

    • debatebox

      Public
      A demonstration of a debate between multiple AI-agents.
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•0•0•Updated Jun 2, 2023Jun 2, 2023

    • biorxiv-retreiver

      Public
      Retrieves Biorxiv data and generates datasets out of it.
      Python
      •
      Apache License 2.0
      •0•2•0•0•Updated May 25, 2023May 25, 2023

    • sdash

      Public
      A dashboard for sharing SmartFigures
      Vue
      •
      MIT License
      •0•2•41•4•Updated May 3, 2023May 3, 2023

    • curation-doc

      Public
      Documentation on definitions and procedures for the SourceData curation system
      0•0•0•0•Updated Feb 10, 2023Feb 10, 2023

    • py-smtag

      Public
      PyTorch version of the SourceData SmartTag engine
      Python
      •
      Other
      •1•0•30•9•Updated Nov 22, 2022Nov 22, 2022

    • sodamet

      Public
      The SourceData Multi-level Embeddings Transformers for Biomedical NER
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 23, 2022Sep 23, 2022

    • datasets

      Public
      🤗 The largest hub of ready-to-use NLP datasets for ML models with fast, easy-to-use and efficient data manipulation tools
      Python
      •
      Apache License 2.0
      •3.1k•0•0•0•Updated Feb 28, 2021Feb 28, 2021

    • gender

      Public
      Gender prediction
      HTML
      •0•0•0•0•Updated Sep 24, 2020Sep 24, 2020

    • ai

      Public
      AI toolbox
      Python
      •
      MIT License
      •0•0•0•0•Updated May 12, 2020May 12, 2020

    • pmidoi

      Public
      Extaction of pmid - doi relationship for a given journal using EuropePMC
      Python
      •0•0•0•0•Updated Jun 26, 2019Jun 26, 2019

    • the-turron-experiment

      Public
      An end-to-end toy scientific experiment, just for fun and learning
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •4•0•0•0•Updated Jun 6, 2019Jun 6, 2019

    • unet-pytorch

      Public
      U-Net implementation for PyTorch based on https://arxiv.org/abs/1505.04597
      Python
      •
      MIT License
      •63•0•0•0•Updated Dec 4, 2017Dec 4, 2017