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  1. pysradbpysradbPublic

    Package for fetching metadata and downloading data from SRA/ENA/GEO

    Python 347 64

  2. covmullercovmullerPublic

    Covmuller is an R-package designed for analysis of SARS-CoV-2 sequencing metadata deposited on GISAID

    R 4

  3. pySCTransformpySCTransformPublic

    Python package to perform normalization and variance-stabilization of single-cell data

    Jupyter Notebook 25 13

  4. blogblogPublic

    Jupyter Notebook 3

  5. gencode_regionsgencode_regionsPublic

    Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files

    Jupyter Notebook 116 51

  6. smithlabcode/ribotricersmithlabcode/ribotricerPublic

    A tool for accurately detecting actively translating ORFs from Ribo-seq data

    Python 39 9