Framework for sensitive DE testing (using neighbourhoods)

R package implementation of Milo for testing for differential abundance in KNN graphs

Clone of the Bioconductor repository for the DropletUtils package.

COSICC R package

Systematic characterisation of perturbations in complex developing cell populations reveals mechanisms underpinning development and disease

A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data

Clone of the Bioconductor repository for the cydar package.

Clone of the Bioconductor repository for the scran package.