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@Teichlab@MarioniLab@scverse

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  1. MarioniLab/miloRMarioniLab/miloRPublic

    R package implementation of Milo for testing for differential abundance in KNN graphs

    R 409 24

  2. milopymilopyPublic

    Python implementation of Milo for differential abundance testing on KNN graph

    Jupyter Notebook 78 9

  3. Teichlab/Pan_fetal_immuneTeichlab/Pan_fetal_immunePublic

    Collection of scripts for analysis of pan fetal immune atlas

    Jupyter Notebook 29 7

  4. MarioniLab/oor_benchmarkMarioniLab/oor_benchmarkPublic

    A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data

    Python 13 2

  5. MarioniLab/oor_design_reproducibilityMarioniLab/oor_design_reproducibilityPublic

    Jupyter Notebook 16 1

  6. scverse/pertpyscverse/pertpyPublic

    Single-cell perturbation analysis

    Python 254 42