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scverse

Foundational tools for omics data in the life sciences
README.md

scverse

Welcome to scverse®!

scverse® is a community that develops and maintains foundational tools for single-cell omics data analysis in primarily Python.

Here's how to get started:

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  1. scanpyscanpyPublic

    Single-cell analysis in Python. Scales to >100M cells.

    Python 2.3k 691

  2. anndataanndataPublic

    Annotated data.

    Python 699 180

  3. scvi-toolsscvi-toolsPublic

    Deep probabilistic analysis of single-cell and spatial omics data

    Python 1.5k 433

  4. squidpysquidpyPublic

    Spatial Single Cell Analysis in Python

    Python 547 101

  5. spatialdataspatialdataPublic

    An open and interoperable data framework for spatial omics data

    Python 338 78

  6. scirpyscirpyPublic

    A scanpy extension to analyse single-cell TCR and BCR data.

    Python 243 41

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